Commit Graph
8060 Commits
Author SHA1 Message Date
DottaandClaude Opus 5.5 faaab3ccca test(evals): refresh source SDK public-input pins after merging master
Co-Authored-By: Claude Opus 5.5 <noreply@anthropic.com>
2026-11-08 23:48:01 -06:00
DottaandClaude Opus 5.5 6fcb3ddab6 test(evals): grade the hire revision by saved state, not reply wording
The formal hire revision oracle required the chat reply to name the
selected model, and its side-effect check matched approval words in the
reply. The query asks for no literal. The saved proposal, the
resubmission audit and the request opened from the reply's own link
already prove the revision. Accept a linked reply that does not repeat
the model, and still reject one that names another catalog model.
Bump oracleVersion to native1017.v6.

Co-Authored-By: Claude Opus 5.5 <noreply@anthropic.com>
2026-11-08 23:45:55 -06:00
Dotta a82afc86fd Merge remote-tracking branch 'origin/master' into chat-eval/master-candidate
* origin/master:
  perf(runner): prepare the next Claude provider generation at park (#20145)
  test(chaos): count an M1 subtask stall only when its recovery needs the board (#20178)
  fix(chat): post a conversation turn's answer while an approval holds the task (#20179)
  fix(issues): start a deferred children-completed wake the release drain missed (#20180)
  fix(budgets): raise_budget_and_resume continues the work its budget stopped, once (#20144)
  test(chaos): add S1, a board Stop across a restart then a continue comment (#20161)
  fix(native): give a preparing run's first turn the user's queued messages instead of interrupting it (#20168)
  fix(storage): back off and reduce parallel parts when S3 asks to slow down (#20165)
  fix(workspaces): release an unchanged remote writer without a snapshot and wake its waiters (#20171)

# Conflicts:
#	server/src/services/heartbeat/run-completion.ts
2026-11-08 23:45:55 -06:00
Nicky LeachandClaude Opus 5.5 2d93413085 perf(runner): prepare the next Claude provider generation at park (#20145)
## Thinking Path

> - Paperclip runs agents through Paperclip Runner, and a host can park
an idle Runner between runs and resume it for the next run on the same
task.
> - For Claude (ACPX), a follow-up run on a parked Runner pays about
1.5–2.3 s at `run.attach` before the provider can start the turn. The
attachment closes the Claude sidecar and spawns a new one: initialize,
`session.open` with `session/load`, `run.attach`, then a dormant verify.
> - The respawn is required. The tool-bridge MCP endpoint lasts for the
whole session and can't tell which turn a late callback came from, so a
new turn must not run in a process that ran an earlier one.
> - Nothing requires the respawn to happen at the *start* of the next
run. A turn that ends 2 s later is a better experience than one that
starts 2 s later.
> - This pull request does the respawn while parking. The next run's
`run.attach` then only rebinds the run id on a fresh, never-used
generation.
> - Follow-up Claude runs on a parked Runner reach the provider about
1.5–2 s sooner, and the late-callback guarantees are unchanged.

## Linked Issues or Issue Description

No public issue exists. The issue is described inline.

### What happened?

On a hosted deployment with parked Runners, Claude follow-up runs
reached the provider about 1.8 s later than Codex follow-ups.
`runner.session.resume` medians were 5.2 s for Claude and 3.4 s for
Codex. The extra time is the ACPX respawn inside `run.attach`. Codex
keeps its process in place.

### Expected behavior

The respawn happens while the Runner parks, so the next run starts on a
prepared generation.

### Steps to reproduce

1. Run a Claude (ACPX) task on a host that parks Runners between runs.
2. Let the run finish and the Runner park.
3. Send a follow-up. `run.attach` closes the provider and starts,
initializes, opens and attaches a new sidecar before `turn.start`. The
Claude CLI itself starts at the first prompt on either path.

### Paperclip version or commit

`master` at e194e193.

### Deployment mode

Hosted, with parked Runner tasks.

## What Changed

- **`durable/runner.rs`:**
- New `CommandExecutor::prepare_for_park(deadline)` hook, a no-op by
default. The runner passes a deadline 20 s after the park request; the
host waits 30 s for the reply.
- The Park host-control arm calls it after `host_park_ready()`,
re-proves readiness, and only then replies `parked`.
- A failure records a diagnostic and replies `conflict`, the existing
park-failure path.
- **ACPX, park side** (`acpx_park_preparation.rs`,
`acpx_provider_generation.rs`):
- For Claude, with the session open, nothing pending and nothing queued:
reap the old generation, using the same suspend-and-reap sequence a
second turn uses.
- Start the replacement with the current run attached, and prove it
dormant.
  - Roll the tool receipt epochs and the turn-identity ledger over.
- Record a digest of the session configuration it was opened with,
ignoring the MCP binding id and the aggregate digest.
- Every sidecar request during preparation is capped at the park
deadline. Running out of time fails like any other preparation failure.
- **ACPX, attach side:**
- A prepared, never-used generation whose digest matches the next run is
rebound: the sidecar gets `run.attach` with the new run id, the reducer
and tool bridges are reset, and the snapshot is checked for the new run
id.
- Anything else takes today's cold path: a different tool set, skill,
prompt or launch; a buffered callback; or any rebind error.
- **ACPX, turn start:** the provider restarts when its generation has
run a turn, instead of when the run has settled turns.
`has_settled_turns` is removed.
- **ACPX, polling:** polling skips a prepared generation until it is
rebound or starts a turn, so nothing it emits is attributed to the
parked run.
- **Sidecar** (`acpx-runtime-sidecar.ts`): rejects `run.attach` once a
turn has started in that process.
- **Fake sidecar:** reports live predecessors at process start, and adds
the faults `reject-open`, `late-tool-after-suspend` and `pre-turn-tool`.

## Verification

- `cargo test -p paperclip-runner-core`: 1029 passed (debug).
  - New `tests/acpx_park_preparation.rs` (10 tests). These prove:
- park reaps the old pid before spawning the new one, and acks only
after the dormant verify;
- a late callback from the old generation after park is rejected, and so
is a pre-turn call from the new generation;
- a compatible attach keeps the pid, and the sidecar and snapshot carry
the new run id;
- changed instructions, tools, skills or runtime context take the cold
path;
    - a used generation is never rebound;
- a prepare failure produces a park conflict and a recoverable state;
    - Retire works after a prepared park;
- a replacement whose `session.open` stalls fails at the park deadline,
leaves the session suspended, and the next run attaches and completes a
turn.
- `cargo fmt --check` and `cargo check --workspace --locked`: clean.
- `vitest` `acpx-runtime-sidecar.test.ts` and
`acpx-sidecar-input.test.ts`: 126 passed. The new re-attach guard test
fails if the guard is removed.
- `vitest` `plugin-runner-release-resume.integration.test.ts` and
`plugin-runner-eviction.integration.test.ts` with the branch's Runner:
48 passed. Both now expect the provider process to be replaced at park
instead of at attach.
- Fake-sidecar timing (release build, 3 runs): `run.attach` took 230–260
ms cold and 40–80 ms after a prepared park.
- Real Claude (claude-agent-acp 0.73.0, release build on a hosted test
VM, 3 runs each way plus one with a 180 s cgroup freeze between park and
attach):

  | | before | this PR |
  |---|---|---|
  | `run.attach` | 1691 ms mean | 212 ms mean |
| `run.attach` start → follow-up `turn.started` | 2565 ms mean | 1065 ms
mean |
  | `turn.start` → first provider output | 2261 ms mean | 2232 ms mean |
  | park preparation added to park | — | about 1450 ms |

Session recall, an authorized tool call after the rebind, and the
absence of any tool call or event from the old run all passed in every
run, including after the freeze. The prepared generation holds only the
sidecar: the Claude CLI starts at the follow-up prompt on both paths, so
a parked Runner also holds one node process instead of the whole Claude
tree.
- Hit rate: on a hosted test deployment, all 15 consecutive Claude runs
across two tasks carried identical content-addressed instruction and
skill bundle paths, so the prepared digest would have matched.
- Not run: the hosted park, claim and attach loop with real Claude, a
native MCP binding or skills with real Claude, `cargo test --release`,
smoke tests.
- Pre-existing flake:
`unconfirmed_suspension_state_becomes_recoverable_only_after_cleanup_and_suspend`
fails intermittently on clean `master` when the `hosted acpx durable::`
subset runs in parallel. It passed in both full runs.

## Risks

- **Park takes about 1.5 s longer** before it replies with real Claude.
Preparation is capped at 20 s; the host's park wait is 30 s.
- **Configuration changes:** a change between park and the next run
(registered asset paths, tools, prompt) takes the cold path. That's
safe, but saves nothing.
- **Stale environment:** a prepared process was opened with the previous
run's environment and disk state. If credential or configuration files
change on disk while the Runner is parked, the prepared process won't
see them, whereas the cold path would.
- **Failed prepare:** a park that fails after the reap leaves no live
provider. The next turn or `run.attach` starts Claude cold, as today.
- **Scope:** only ACPX Claude prepares. Other providers park exactly as
before.

## Model Used

- Claude Opus 5.5 (`claude-opus-5-5`) in Claude Code, with tool use
(shell, git, GitHub CLI) and subagents.

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have searched GitHub for duplicate or related PRs and linked
them above
- [x] I have either (a) linked existing issues with `Fixes: #` / `Closes
#` / `Refs #` OR (b) described the issue in-PR following the relevant
issue template
- [x] I have not referenced internal/instance-local Paperclip issues or
links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip`
URLs)
- [x] My branch name describes the change (e.g. `docs/...`, `fix/...`)
and contains no internal Paperclip ticket id or instance-derived details
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [x] All Paperclip CI gates are green
- [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups
- [x] I will address all Greptile and reviewer comments before
requesting merge

🤖 Generated with [Claude Code](https://claude.com/claude-code)

---------

Co-authored-by: Claude Opus 5.5 <noreply@anthropic.com>
2026-11-08 21:38:57 -08:00
DottaandClaude Opus 5.5 0ddc9f1ef1 test(chaos): count an M1 subtask stall only when its recovery needs the board (#20178)
## Thinking Path

> - Paperclip is the open source app people use to manage AI agents for
work
> - The M1 chaos oracle checks that a parent gets exactly one
`issue_blocker_stalled` wake per stalled subtask (#20147)
> - The product wakes a parent only for a stall that needs the board.
The harness recorded a stall for any blocked subtask, whatever its
latest recovery action
> - In the Daytona M1 wave, a subtask blocked twice on agent- and
system-owned recovery that resolved by itself. The harness counted two
stalls and failed the parent for getting no wake, a false failure
> - This pull request records a stall only when the subtask's latest
recovery action needs the board, matching the product's definition
> - The benefit is that `parent_woken_once_per_stall` fails only for a
wake the product owed

## Linked Issues or Issue Description

Refs #20147, #20098

**What happened?**
In wave `w-20261109T041248-s9501`, t10's subtask 195b5fd7 was blocked
twice. Action 56d036e0 was agent-owned (`native_session_interrupted`)
and was cancelled. Action 53eb91b0 was system-owned
(`native_continuation_requires_reconciliation`) and resolved with
outcome cancelled. Neither needed the board, so the product correctly
sent no stall wake. The harness still failed
`parent_woken_once_per_stall` with 2 stalls and 0 wakes.

**Expected behavior**
A stall counts when the subtask's latest recovery action is:
- open (active or escalated) and board-owned, or escalated; or
- board-owned and resolved with outcome blocked, with the subtask still
blocked.

That is the definition the product's blocker-stall wake uses.

## What Changed

- `observeChildStalls` reads the parent's `stalledDependencies` from
`GET /api/issues/:id`. That is the product's own stalled-dependency view
(`listStalledDependencies`, built with the same `readStalls` the
blocker-stall wake uses).
- Each `relation: "child"` entry is recorded as a stall
(`stalledIssueId`, `recoveryAction.id`). The harness no longer infers
stalls from `/recovery-actions`. That endpoint lists only open actions
and selected holds, and can omit a board action resolved with outcome
blocked.
- Clicking the board Retry on a blocked subtask is unchanged: it still
happens whenever the product offers Retry, and it still counts as a
needed Retry.
- Tests:
  - a stall the product lists is recorded;
- for t10's two non-board recovery states, the product lists nothing, so
no stall is recorded, and the subtask's Retry is still clicked.

## Verification

- `npx vitest run` in `tests/restart-chaos`: 212 passed.
- `node scripts/typecheck-test-projects.mjs tests/restart-chaos`: clean.

## Risks

- The harness checks `stalledDependencies` every 10 s. A stall that
appears and clears inside one interval is not recorded, so its wake goes
unchecked. It is never reported as a false failure.

## Model Used

- Claude Opus 5.5 (`claude-opus-5-5`), Anthropic, with tool use and code
execution in Claude Code.

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have searched GitHub for duplicate or related PRs and linked
them above
- [x] I have either (a) linked existing issues with `Fixes: #` / `Closes
#` / `Refs #` OR (b) described the issue in-PR following the relevant
issue template
- [x] I have not referenced internal/instance-local Paperclip issues or
links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip`
URLs)
- [x] My branch name describes the change (e.g. `docs/...`, `fix/...`)
and contains no internal Paperclip ticket id or instance-derived details
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [ ] All Paperclip CI gates are green
- [ ] Greptile is 5/5 with no open P2s, recommendations, or follow-ups
- [x] I will address all Greptile and reviewer comments before
requesting merge

🤖 Generated with [Claude Code](https://claude.com/claude-code)

---------

Co-authored-by: Claude Opus 5.5 <noreply@anthropic.com>
2026-11-08 23:36:40 -06:00
DottaandClaude Opus 5.5 5bd4c176b7 test(evals): run the hire review readiness test in jsdom, which its DOM checks need
Co-Authored-By: Claude Opus 5.5 <noreply@anthropic.com>
2026-11-08 23:33:44 -06:00
DottaandClaude Opus 5.5 b3c3e1ef1c test(evals): open an authored skill from its Skill created card when the reply has no link
The create_skill tool shows a Skill created card whose side panel opens the skill in Skill Studio. That card is the product's own path, so the person uses it when the reply has no skill link. Fail only when neither path exists.

Co-Authored-By: Claude Opus 5.5 <noreply@anthropic.com>
2026-11-08 23:28:52 -06:00
DottaandClaude Opus 5.5 44e54d6185 test(evals): wait for the owner handoff's project link to render
The reply settled with a project link in its text, but the thread had not rendered the link yet when the step read it. Poll briefly for the rendered link before failing.

Co-Authored-By: Claude Opus 5.5 <noreply@anthropic.com>
2026-11-08 23:28:52 -06:00
DottaandClaude Opus 5.5 7b123ab136 test(evals): wait for Birch's project after reload before recording it
isVisible() does not wait, so afterReloadVisible read the page before the reloaded project rendered and failed a correct switch.

Co-Authored-By: Claude Opus 5.5 <noreply@anthropic.com>
2026-11-08 23:28:52 -06:00
Dotta 4bab27f9b2 fix(authz): link the project's access settings when an agent cannot share a project
A board-only denial for project access members had no known page, so agents told people to find sharing settings themselves. Name the project's Configuration page, where Manage access is.

Co-Authored-By: Claude Opus 5.5 <noreply@anthropic.com>
(cherry picked from commit b5f3ac9092)
2026-11-08 23:28:52 -06:00
DottaandClaude Opus 5.5 d7834a3408 test(evals): resolve the Birch row filter from the page root
A filter({ has }) locator is evaluated inside each candidate row, so a menu-scoped inner locator never matched. Start the inner text locator from the page.

Co-Authored-By: Claude Opus 5.5 <noreply@anthropic.com>
2026-11-08 23:28:52 -06:00
DottaandClaude Opus 5.5 4a34c17d75 test(evals): reset Morgan's sessions from the profile header actions menu
The agent profile h1 is the agent's title, not its name, and the menu item now reads "Reset sessions". Identity is already confirmed by the named avatar in openRuntimeAgentProfile; use the main landmark and a case-insensitive reset label.

Co-Authored-By: Claude Opus 5.5 <noreply@anthropic.com>
2026-11-08 23:28:52 -06:00
DottaandClaude Opus 5.5 8680b56b89 test(evals): open an authored skill from the reply link, then find it in My Skills
Skills is no longer a primary sidebar link. The person follows the skill link the reply rendered, then uses the Skills section's My Skills link to confirm it is in the library. A reply without a link to the saved skill now fails the case. Bump skill-authoring oracle to v7.

Co-Authored-By: Claude Opus 5.5 <noreply@anthropic.com>
2026-11-08 23:28:52 -06:00
DottaandClaude Opus 5.5 9415389f0f test(evals): review secret proposals on the chat card the agent left
The /<prefix>/secrets route no longer exists (secrets moved under company settings). The person reviews the human-only Confirm secret binding card in the chat instead; its Reject and Create binding buttons resolve the linked proposal through the same governed path, and the case waits for the saved proposal status.

Co-Authored-By: Claude Opus 5.5 <noreply@anthropic.com>
2026-11-08 23:28:51 -06:00
DottaandClaude Opus 5.5 576b7de0ad test(evals): open the project access picker without toggling it shut
Opening Private project access focuses the person picker, which opens its search panel by itself; the scripted click then closed it. Click only while the panel is still closed, and pick Riley inside that panel.

Co-Authored-By: Claude Opus 5.5 <noreply@anthropic.com>
2026-11-08 23:28:51 -06:00
DottaandClaude Opus 5.5 30900a980a test(evals): pick Birch from the organization switcher by its visible name
Each organization row's accessible name starts with its avatar initial ("B Birch BIR"), so /^Birch/ never matched. Match the row inside the open menu by its exact organization name.

Co-Authored-By: Claude Opus 5.5 <noreply@anthropic.com>
2026-11-08 23:28:51 -06:00
DottaandClaude Opus 5.5 95bf90bd2c fix(chat): post a conversation turn's answer while an approval holds the task (#20179)
## Thinking Path

> - Paperclip is the open source app people use to manage AI agents for
work.
> - People talk to agents in chat. The agent's final message becomes the
chat reply.
> - A chat turn can end while the task stays held. For example, the
agent resubmits a hire approval and the approval is pending.
> - The finalizer keeps the task in review for the approval
(`governed_response_waiting`). That decision is not
`conversation_turn_finished`.
> - Run completion then treats the yielded turn as a control-plane wait.
It records `presentationDecision: none` and posts no comment.
> - The person never sees the agent's answer. The chat shows nothing
after the request.
> - This pull request counts a committed conversation turn as answered
unless its own pending question or confirmation card presents it.
> - The benefit is that the person always gets the reply, whatever state
the task keeps.

## Linked Issues or Issue Description

Refs #19971 (post the full final reply). That fix covers the reply text.
This fix covers replies that were never posted.

**What happened**

In a chat, the person asked the CEO agent to change a proposed hire to a
cheaper model and send it back for approval. The agent resubmitted the
approval correctly. It called `paperclip_finish`, and Paperclip accepted
the report with "task is still waiting for approval". The run succeeded
and the task moved to `in_review`. The run event
`run.presentation.resolved` recorded `commentAction: none` (reason
`yielded_control_plane_wait` on master). The agent's final message never
reached the chat.

**Expected behavior**

A chat turn's accepted final answer is always posted to the
conversation. An approval, an execution stage or a dependency blocker
can hold the task. It must not hide the reply. Only a question or
confirmation card that the turn itself left pending presents the turn
instead of its prose.

**Steps to reproduce**

1. Open an Agent Chat with an agent. Link a hire approval in
`revision_requested` to the chat task.
2. Ask the agent to change the hire and resubmit it.
3. The agent resubmits the approval and ends the turn with a yielded
result and a response wake.
4. See that the chat shows no reply. The run is `succeeded` and its
presentation decision is `none`.

## What Changed

- `server/src/services/native-runtime/native-governance.ts`: move the
pending-card query of `pendingNativeGovernance()` into
`pendingNativeInteraction()`, with no change in behavior. Add
`conversationTurnAnswered()`. It returns false only when a pending
thread interaction (the same predicate as status arbitration) gates the
turn. It checks cards on their own, so a pending execution stage does
not hide a card.
- `server/src/services/heartbeat/run-completion.ts`: a successful
conversation run whose status decision committed now passes
`conversationTurnFinished: true` to the presentation resolver, unless
`conversationTurnAnswered()` is false. The existing
`conversation_turn_finished` path is unchanged.
- `server/src/services/heartbeat/run-completion.test.ts`: add a
regression table with a real database. A pending approval, a
revision-requested approval, a pending execution stage and a dependency
blocker now post the answer. A finished turn still posts. The turn's own
question card still owns the response, also when an execution stage is
pending.
- `doc/execution-semantics.md`: state the rule.

Other finish outcomes I checked:

- `done` or `needs_review` with a gate (`governed_gate_pending`): the
result is not yielded, so the reply was already posted.
- `blocked` (`paperclip_block`, waiting on a person or another task):
not yielded, so the reply was already posted.
- Yielded with a dependency blocker
(`durable_dependency_blocker_bound`), or with
`record_finalization_error` (`prior_status_preserved_no_live_path`,
`monitor_wait_authority_lost`): the reply was also dropped. This fix
covers them, because the rule does not depend on the reason code.

## Verification

- `cd server && npx vitest run
src/services/heartbeat/run-completion.test.ts`: 118 passed. Before the
fix, 4 new cases failed (both approval states, execution stage,
dependency blocker). The finished-turn and question-card cases passed
both before and after.
- `cd server && npx vitest run
src/__tests__/heartbeat-run-summary.test.ts
src/services/heartbeat/run-comment-selection.test.ts
src/__tests__/slack-conversation-lifecycle.test.ts
src/services/native-runtime/agent-chat-response-recovery.test.ts
src/__tests__/chat-run-milestone-governed-work.test.ts
src/__tests__/agent-conversations.test.ts`: all passed.
- `tsc --noEmit -p server`: no errors in the changed files. Unrelated
errors in this worktree come from an unbuilt local Runner package.
- An end-to-end chat eval run on the case branch is in progress. I will
add its result here.

## Risks

- Low risk. The change only affects successful Agent Chat runs with a
committed status decision. Ordinary tasks and external chat (Slack,
GitHub) keep their own paths. External chat returns before this check.
- A turn that yields while an approval is pending now posts its prose.
The approval stays pending and the task status does not change.
- One extra small read (the task row and pending gates) runs after a
conversation turn that is not `conversation_turn_finished`. It runs
after the provider turn ends, so it does not add time before the first
token.
- Previous-release state: no persisted shape changes. The fix reads
`finalizationPhase` and `finalizationReasonCode`, which the previous
release already writes. A run in flight at the deploy completes on the
new code and posts its reply. A run that completed before the deploy
keeps its recorded decision; nothing re-presents it.
- Known gap, unchanged: background presentation recovery for
conversations still requires `conversation_turn_finished` with a `done`
result. If the server restarts between the status commit and the live
presentation, a held yielded turn is not re-posted. That is a separate
follow-up.

> For core feature work, check [`ROADMAP.md`](ROADMAP.md) first and
discuss it in `#dev` before opening the PR. Feature PRs that overlap
with planned core work may need to be redirected — check the roadmap
first. See `CONTRIBUTING.md`.

## Model Used

- Anthropic Claude Opus 5.5 (`claude-opus-5-5`), with tool use (shell,
file edits, test runs) in Claude Code.

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have searched GitHub for duplicate or related PRs and linked
them above
- [x] I have either (a) linked existing issues with `Fixes: #` / `Closes
#` / `Refs #` OR (b) described the issue in-PR following the relevant
issue template
- [x] I have not referenced internal/instance-local Paperclip issues or
links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip`
URLs)
- [x] My branch name describes the change (e.g. `docs/...`, `fix/...`)
and contains no internal Paperclip ticket id or instance-derived details
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [ ] All Paperclip CI gates are green
- [ ] Greptile is 5/5 with no open P2s, recommendations, or follow-ups
- [x] I will address all Greptile and reviewer comments before
requesting merge

🤖 Generated with [Claude Code](https://claude.com/claude-code)

---------

Co-authored-by: Claude Opus 5.5 <noreply@anthropic.com>
2026-11-08 23:17:36 -06:00
DottaandClaude Opus 5.5 c5c587f162 fix(issues): start a deferred children-completed wake the release drain missed (#20180)
## Thinking Path

> - Paperclip is the open source app people use to manage AI agents for
work
> - A parent that delegates waits for its children, and is woken when
they finish (`issue_children_completed`)
> - Restart chaos t06 ended with both children done and the parent
blocked forever
> - The children finished while the parent's run was still going, so the
wake was deferred as a follow-up. That run then ended with the agent
setting the parent blocked, and the deferred wake was never started
> - The durable re-drivers for deferred wakes cover only
`issue_blockers_resolved`, so nothing else picks up a missed
`issue_children_completed`
> - This pull request makes both re-drivers cover children-completed
wakes too
> - The benefit is that a parent always hears that its children
finished, even when the release drain misses the deferred wake

## Linked Issues or Issue Description

Refs #19831 (durable ownership plan). Restart chaos wave
`w-20261109T041248-s9501`, task t06 (claude, M1, K2), Daytona per-turn,
master fa7950121d.

**Problem:** parent CHA-10 (all times UTC):
- 04:29:57: run 9cf49f52 started.
- 04:32:35 and 04:32:43: its children CHA-13 and CHA-14 finished.
- 04:32:43: `issue_children_completed` merged into the running turn.
- 04:32:53: that wake was deferred as a follow-up
(`issue_execution_deferred`, `deferred_issue_execution`, no run).
- 04:33:13: the turn ended with the agent setting the parent `blocked`,
a decision made before it saw the children's results.

The deferred wake stayed deferred for the rest of the wave, including
three later restarts. The parent sat blocked with no Retry. The
deferred-receipt worker (`deferred-receipt-work.ts`) and the
stranded-queue resume (`queue.ts`) select deferred dependency wakes with
`issueBlockersResolvedWakePayloadSql`, which matches only
`issue_blockers_resolved`.

## What Changed

- `server/src/services/issue-dependency-wakeups.ts`:
`dependencyResolvedWakePayloadSql` and `isDependencyResolvedWakePayload`
replace the blockers-only predicates. They match both
`issue_blockers_resolved` and `issue_children_completed` in
`_paperclipWakeContext.wakeReason`.
- The deferred-receipt worker and the stranded-queue resume use them, so
a deferred children-completed wake is started once the parent has no
live run, the same way a blockers-resolved one is.
- No code comments added.

## Verification

Red/green:
- `deferred-execution-receipt-work.test.ts` "starts a deferred
children-completed wake left behind when its parent's run blocked the
parent (restart chaos t06)". It sets up a blocked parent whose last run
succeeded, a done child, and the deferred `issue_children_completed`
receipt as t06 left it.
  - On master: the receipt stays `deferred_issue_execution` (red).
- With this PR: the receipt completes with exactly one
`issue_children_completed` run.
- `deferred-execution-receipt-work` and
`heartbeat-dependency-scheduling` pass (60 tests). `tsc --noEmit -p
server` is clean.

## Risks

- The workers now also select deferred children-completed wakes.
Admission is unchanged: they still pass the queue's own gates, and they
start only when the issue has no live run, the same as blockers-resolved
wakes.
- No schema change.

## Model Used

Anthropic Claude Opus 5.5 (`claude-opus-5-5`), via Claude Code, with
tool use (shell, file editing).

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have searched GitHub for duplicate or related PRs and linked
them above (#20069, #20108)
- [x] I have either (a) linked existing issues with `Fixes: #` / `Closes
#` / `Refs #` OR (b) described the issue in-PR following the relevant
issue template
- [x] I have not referenced internal/instance-local Paperclip issues or
links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip`
URLs)
- [x] My branch name describes the change (e.g. `docs/...`, `fix/...`)
and contains no internal Paperclip ticket id or instance-derived details
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [x] I have updated relevant documentation to reflect my changes (no
user docs affected)
- [x] I have considered and documented any risks above
- [ ] All Paperclip CI gates are green (pending)
- [ ] Greptile is 5/5 with no open P2s, recommendations, or follow-ups
(pending)
- [x] I will address all Greptile and reviewer comments before
requesting merge

🤖 Generated with [Claude Code](https://claude.com/claude-code)

Co-authored-by: Claude Opus 5.5 <noreply@anthropic.com>
2026-11-08 23:14:47 -06:00
DottaandClaude Opus 5.5 5a51a7685d fix(budgets): raise_budget_and_resume continues the work its budget stopped, once (#20144)
## Thinking Path

> - Paperclip is the open source app people use to manage AI agents for
work
> - A budget hard stop cancels the scope's running work; the board
resolves it with Raise budget and resume
> - In the restart-chaos H1 scenario, the cancelled tasks did not
continue after resume and each needed a manual Retry
> - Resume is the board's explicit decision to continue, so the work it
stopped should continue once, as if the board clicked Retry
> - This pull request files that Retry automatically, keyed by the
cancelled run, once the run's stop has settled
> - The benefit is that a budget raise restores the work without manual
Retries, without repeating completed work, and without charging the
run's attempt budget

## Linked Issues or Issue Description

Refs #20143 (bug B; this PR builds on it), #20113 (bug A), #20101
(superseded: split into #20143 and this PR)

**What happened?**
Restart-chaos waves w-20261108T195944-s42 and w-20261108T210118-s9802
(H1). After `raise_budget_and_resume`, CHA-3's budget-cancelled run
(enforcement stop) and CHA-1's run (agent lifecycle pause from the
budget hold) stayed cancelled until someone clicked Retry.

**Expected behavior**
Resuming continues each task its budget stopped, exactly once, with no
attempt charged, an activity entry, and no repeat of work that already
continued. A run a person stopped stays stopped.

**Steps to reproduce**
Set a budget below spend while a task runs; let the stop cancel the run;
resolve with Raise budget and resume. Before this change, no new run is
queued.

## What Changed

- New table `budget_resume_claims` (migration 0451). One row per
cancelled run, outside the run's result JSON, so a Stop that settles
during the resume cannot erase it.
- `markBudgetCancelledWorkForResume` (called by `resolveIncident` before
the incident closes): claims every task run its budget stopped since the
incident opened. That covers runs budget enforcement fenced, including
stops still in flight, and runs the agent lifecycle pause stopped for
this budget (`pauseStop`, carried from the lifecycle operation's
`pauseCause` so a resume before the Stop keeps the link). Runs a person
stopped are excluded. Two indexed passes led by `(company_id, status)`.
- `deliverBudgetResumeContinuations`: once a claimed run's stop settles,
files the resolving board member's Retry (`requestTaskRetry`,
idempotency key `budget-resume:<run>`, with the member's session source
and the chat Retry callback). The Retry path checks, under the task
lock, that the run is still the task's latest and the task is open, so
continued or completed work is never repeated. Claim settlement and its
activity entry commit together; retryable refusals and errors retry.
- Delivery runs in the always-on budget-enforcement worker after each
pass's Stop delivery. Its schedule includes deliverable claims and the
earliest stale-claim expiry. The execution-continuation worker is a
backstop.
- `agent.paused` / `agent.resumed` logging is in #20113.
`budget.cancelled_work_resume_requested` (incident) and
`budget.cancelled_work_continued` / `_not_continued` (task) are recorded
here.

## Verification

- New `budget-resume-continuation.test.ts` (Postgres, real
`resolveIncident` → claims → `requestTaskRetry` → real `resumeTaskRetry`
into a queued run):
- each task continues once, including a blocked task; repeat delivery or
resolve saves nothing new;
- a stop still in flight at resume, whose terminal write replaces the
result JSON, is still continued;
  - a 30-task scope is fully continued;
- a lifecycle-pause stop caused by the budget is continued, and one
caused by a manual pause is not;
- continued work, done tasks, a run that finished before its stop, and
person-stopped runs (including ones enforcement also fenced) are not
continued.
- `lifecycle.test.ts`: the pause records its cause on the operation and
on stopped runs, including when the budget is resumed before the pause's
Stop. `budget-enforcement-worker.test.ts`: delivery after Stop delivery,
and a wake at claim expiry.
- 287 tests across the affected suites passed. Server typecheck
(`typecheck-layers`, low-memory): no errors.
- Not run: the H1 chaos rerun (Phase 3 runs it after merge).

## Risks

- Resume now continues budget-stopped tasks automatically. A board that
wants a task stopped can Stop it again; person-stopped runs are never
continued.
- A new table and one index (migration 0451).

> For core feature work, check [`ROADMAP.md`](ROADMAP.md) first and
discuss it in `#dev` before opening the PR. Feature PRs that overlap
with planned core work may need to be redirected — check the roadmap
first. See `CONTRIBUTING.md`.

## Model Used

- Claude Opus 5.5 (`claude-opus-5-5`), Anthropic, via Claude Code with
tool use (shell, file edits, test execution). Extended reasoning
enabled.

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have searched GitHub for duplicate or related PRs and linked
them above
- [x] I have either (a) linked existing issues with `Fixes: #` / `Closes
#` / `Refs #` OR (b) described the issue in-PR following the relevant
issue template
- [x] I have not referenced internal/instance-local Paperclip issues or
links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip`
URLs)
- [x] My branch name describes the change (e.g. `docs/...`, `fix/...`)
and contains no internal Paperclip ticket id or instance-derived details
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [ ] All Paperclip CI gates are green
- [ ] Greptile is 5/5 with no open P2s, recommendations, or follow-ups
- [x] I will address all Greptile and reviewer comments before
requesting merge

🤖 Generated with [Claude Code](https://claude.com/claude-code)

---------

Co-authored-by: Claude Opus 5.5 <noreply@anthropic.com>
2026-11-08 22:56:28 -06:00
DottaandClaude Opus 5.5 61fa13c6d8 test(chaos): add S1, a board Stop across a restart then a continue comment (#20161)
## Thinking Path

> - Paperclip is the open source app people use to manage AI agents for
work
> - The restart chaos harness drives real user actions across
control-plane restarts: comments, Retry, approvals and budget resumes
> - The board's Stop button on a running task was not exercised. The
cancel route stamps the stop as operator-initiated so that recovery
stands down instead of re-waking the agent
> - A restart right after a Stop is where recovery could wrongly restart
work the operator stopped, or lose the operator's later "continue"
direction
> - This pull request adds S1: stop the running run, fire a fault right
after, then comment to continue
> - The benefit is a graded check that a Stop holds across a restart and
that a later continue comment finishes the task

## Linked Issues or Issue Description

Refs #20071

**What is missing?**
The campaign's scenario list includes mid-run stops. C1 covers a mid-run
comment (a steer), but no workload clicks Stop. Without one, a
regression where recovery restarts operator-stopped work, or drops the
continue comment, would go unseen.

**Expected behavior**
- After the board stops a run and a restart follows, the stopped run
stays cancelled.
- Nothing runs until the operator comments.
- The continue comment then finishes the task.

## What Changed

- S1 workload ("Stop while running, then continue"): a brief task. At
its follow-up time, while a run is running, the observer posts `POST
/api/heartbeat-runs/:id/cancel` (the board's Stop) and records `stop`.
- New `stop` trigger, for S1 only: the planned fault fires 0–2 s after
the stop.
- The continue comment is posted only after the stop has settled: at
least 20 s after the stop, with no run running or queued and no fault in
progress. It asks the agent to continue and add a `CONTINUE-<nonce>`
line.
- The oracle requires:
  - status done;
  - the brief with the chaos and continue markers;
  - `stop_took_effect`: the stopped run ended `cancelled`;
- `nothing_ran_after_stop`: no run was created between the stop and the
continue comment.
- S1 is not a default workload. There is a README section.

## Verification

- `npx vitest run` in `tests/restart-chaos`: 205 passed. New tests
cover:
- the S1 grade (pass, a run restarted after the stop, the stop not
taking effect, no stop);
  - the trigger-to-workload pairing;
- an observer test that clicks Stop once and posts the continue comment
only after the 20 s settle.
- `node scripts/typecheck-test-projects.mjs tests/restart-chaos`: clean.
- A live S1 wave runs after the current chaos wave. Its result will be
posted here before merge.

## Risks

- If the product moves the stopped run to a status other than
`cancelled`, `stop_took_effect` fails. That check is intentional.
- The continue comment waits for the stop to settle, so a run stuck
`queued` delays it. R5 and the wave deadline still bound the wait.

## Model Used

- Claude Opus 5.5 (`claude-opus-5-5`), Anthropic, with tool use and code
execution in Claude Code.

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have searched GitHub for duplicate or related PRs and linked
them above
- [x] I have either (a) linked existing issues with `Fixes: #` / `Closes
#` / `Refs #` OR (b) described the issue in-PR following the relevant
issue template
- [x] I have not referenced internal/instance-local Paperclip issues or
links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip`
URLs)
- [x] My branch name describes the change (e.g. `docs/...`, `fix/...`)
and contains no internal Paperclip ticket id or instance-derived details
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [ ] All Paperclip CI gates are green
- [ ] Greptile is 5/5 with no open P2s, recommendations, or follow-ups
- [x] I will address all Greptile and reviewer comments before
requesting merge

🤖 Generated with [Claude Code](https://claude.com/claude-code)

---------

Co-authored-by: Claude Opus 5.5 <noreply@anthropic.com>
2026-11-08 22:52:48 -06:00
DottaandClaude Opus 5.5 92d5d7771f test(evals): accept the native status committer's done transition in revoke-personal-grant
The worker completes its task through the native status committer, which
records issue.updated as a system actor with the worker's runId and
details.toStatus, not as the assignee agent with details.status. Run
42560576472 completed the task normally and failed only this lookup. The
check now also accepts that row when its runId is the same worker run.

Co-Authored-By: Claude Opus 5.5 <noreply@anthropic.com>
2026-11-08 22:51:23 -06:00
DottaandClaude Opus 5.5 93cd4299d7 test(evals): wait for the persisted pause reply's profile link before following it
Run 42560576472 observed the thread the moment the CEO run settled. The
reply was on screen with its profile link, but the persisted comment had
not rendered yet, so the link collector found nothing. The scripted person
now re-reads the rendered thread for up to 30 seconds before failing.

Co-Authored-By: Claude Opus 5.5 <noreply@anthropic.com>
2026-11-08 22:51:23 -06:00
DottaandClaude Opus 5.5 b31950c439 test(evals): grade assistant decline and revoke cases by saved state, not reply keywords
decline-consent's truthful-decline check and revoke-personal-grant's
oldAssistantGuidance matched reply keywords (the revoke act also threw on
them). decline-consent now requires a reply, no pending re-prompt, and no
agent-authored connection, grant or secret write. revoke-personal-grant
now requires a reply, the old grant still active when the person follows
the reply's assistant-connections link, and no lead update to the
delegated task, beside its existing revocation and lifecycle checks.

Co-Authored-By: Claude Opus 5.5 <noreply@anthropic.com>
2026-11-08 22:51:23 -06:00
DottaandClaude Opus 5.5 16236acf33 test(evals): grade the pause-agent case by saved state and the followed profile link
pending-human-step-honest matched reply keywords. It is replaced with
structural checks: Morgan and the worker run were still running when the
person took over, no agent-authored lifecycle write to Morgan succeeded,
the reply rendered a link to Morgan's profile, and the scripted person
reached the Pause control by clicking that link. The typed-URL fallback
is gone, and the actions menu is scoped to the profile header because the
sidebar has a same-named menu.

Co-Authored-By: Claude Opus 5.5 <noreply@anthropic.com>
2026-11-08 22:51:23 -06:00
DottaandClaude Opus 5.5 8ce3389fb5 fix(api): tell agents only the person can revoke assistant connections, and where
A chat agent asked to "disconnect my old assistant" found DELETE
/api/mcp/connections/{id}, was refused by call_api as a protocol
endpoint, and then spent its whole turn searching for an agent route
that does not exist, never replying. Neither the catalog entry nor the
rejection said the action is person-only or which page holds it.

Both assistant connection catalog entries now say only the signed-in
person can list or revoke them, link the Assistant connections page,
say not to search for another route, and state that revoking leaves
already-delegated tasks running. The call_api protocol rejection now
says no other API route substitutes for the endpoint.

Co-Authored-By: Claude Opus 5.5 <noreply@anthropic.com>
2026-11-08 22:51:23 -06:00
DottaandClaude Opus 5.5 f81933d010 test(evals): stop treating the OAuth state nonce as a persisted-state secret
decline-consent and revoke-personal-grant added the public OAuth `state`
to the private secret list. The server must store `state` in
mcp_oauth_requests to return it on the redirect, so the persisted-state
scan matched it in that table's heap file (relfilenode 26324) and refused
an otherwise passing cell. Codes and tokens stay private; the server stores
them only as SHA-256 hashes, and the PKCE verifier is never stored.

Co-Authored-By: Claude Opus 5.5 <noreply@anthropic.com>
2026-11-08 22:51:22 -06:00
DottaandClaude Opus 5.5 2a607c4239 test(evals): open the profile actions menu before the human pauses Morgan
The agent profile moved Pause into its actions menu (#19535), so the
scripted human timed out looking for a header Pause button after the CEO
correctly handed the pause to the person.

Co-Authored-By: Claude Opus 5.5 <noreply@anthropic.com>
2026-11-08 22:51:22 -06:00
DottaandClaude Opus 5.5 b54317d3fb fix(native): give a preparing run's first turn the user's queued messages instead of interrupting it (#20168)
## Thinking Path

> - Paperclip is the open source app people use to manage AI agents for
work
> - A Paperclip Runner (native) run prepares its workspace and
environment before it starts its first provider turn. This can take
about a minute.
> - A user's message that arrives during that time waits as a deferred
wake behind the run. The Interrupt control then cancelled the run before
any provider turn.
> - The cancel threw away the whole preparation. A new run had to
prepare again, so the user waited longer for the first token.
> - This pull request gives the run's first turn the queued messages.
The run seals its first-turn input immediately before `turn.start`, so
the messages are part of the prompt that the turn starts with.
> - The benefit is that the user sees the message handled in the same
run, with no cancel and no second preparation.

## Linked Issues or Issue Description

**What happened?**
A Paperclip Runner run took about 54 s to prepare (environment startup,
workspace, runtime selection). The user sent a second message 32 s into
that time and clicked Interrupt 21 s later. Interrupt cancelled the run
as `operator_interrupted` ("Interrupted to send queued messages") before
any provider turn. A new run then prepared again from the start. The
runtime-selection transaction that froze the run's input completed about
5 s before the click, and the coordinator claim came 4 s after it, so
the message could not be given to the first turn at any point in the old
code.

**Expected behavior**
When a user message arrives for a task whose current run has not started
its first provider turn, the run does not stop. The message goes into
that run's first turn. A run that is in a turn is interrupted as before.

**Steps to reproduce**
1. Assign a task to a Paperclip Runner agent with a sandbox environment,
so preparation takes a long time.
2. While the run prepares, post a second comment on the task.
3. Click Interrupt on the queued message before the run starts its
provider turn.
4. See that the run is cancelled and a new run prepares again.

**Paperclip version or commit**
Staging revision b43cccbb0.

## What Changed

- `server/src/services/native-runtime/first-turn-queued-input.ts` (new):
`claimFirstTurnQueuedInput` seals a run's first-turn input in one
transaction. It locks the task, the deferred wakes, and the run in the
same order as the queue routes. It takes the responsible user's plain
queued comments in queue order (not interaction answers, interrupt
intents, independent continuations, conversations, or other users'
messages). It renders them with source-trust sanitizing and secret
redaction, then writes a `firstTurnQueuedInput` receipt
(`paperclip.first-turn-queued-input.v1`) into the run context. A second
call for the same run returns the same messages.
`runAcceptsFirstTurnQueuedInput` is true for a running native (or
preparing native) run that has no receipt and no accepted provider turn.
- `packages/paperclip-runner/src/native-session-runtime.ts`: new
`getFirstTurnQueuedInput` option. The runner calls it immediately before
the first `session.startTurn` and appends the result to `task.prompt`
(or to `events` for a resumed-session continuation envelope). It is not
called for the disposition-only recovery turn.
- `native-session-executor.ts`: passes the claim to the runner. A failed
seal commits nothing, so the executor logs it and starts the turn
without the messages. The messages stay queued.
- `queued-comment-delivery.ts`: a message in a run's receipt counts as
delivered only after the provider accepted that run's turn
(`turn.accepted` or the provider's `turn.started`), and only if the
message was not edited after the seal. Release promotion, Send, and
later first turns use this rule. `explicit-native-continuation.ts` uses
the same rule for stopped native runs.
- `routes/issues.ts` Interrupt: when the target run has not sealed its
first turn and has no accepted turn, the route does not record interrupt
intent and does not cancel the run. The response has
`executionWait.reason = "first_turn_pending"`. Other runs are
interrupted as before.
- Queue views (`routes/issues.ts` and the wake-queue adapter) hide
messages that the active run took into its first turn. Queue edits keep
those ids on the wake, so a run that fails before acceptance still
leaves them queued.
- `run-state.ts`: the issue-control run projection includes the receipt,
so the queue poll can hide taken messages.
- `doc/execution-semantics.md`: new section "Queued messages before a
native run's first turn".

## Verification

- Red before the fix, green after:
- `pnpm --filter @paperclipai/server exec vitest run
src/__tests__/issue-queued-comments-routes.test.ts -t "first
turn|already started"`: Interrupt on a preparing run and on a claimed
native run before `turn.start` does not stop the run, and the first turn
gets both messages in order. Before the fix, both cases cancelled the
run.
- `pnpm --filter @paperclipai/paperclip-runner exec vitest run
src/native-session-runtime.test.ts -t "first-turn queued input"`: the
claim runs immediately before `turn.start`, and the first turn's prompt
ends with the queued messages. Before the fix, the claim was never
called.
- `pnpm --filter @paperclipai/server exec vitest run
src/services/native-runtime/first-turn-queued-input.test.ts`: a run that
fails before `turn.start` leaves the message queued. The next run
delivers it, and after that no later run or copied retry context takes
it again. Before the delivery rule, the "exactly once" and "accepted
then failed" cases failed.
- Safety cases that pass before and after: Interrupt still cancels a run
whose provider accepted a turn (including a run saved by the previous
release with no receipt) and a run whose first-turn input is already
sealed. The existing "explicit interrupt fallback" cases for preparing
and native runs without a responsible user still pass.
- Speed: the seal is one short transaction before `turn.start`. In the
embedded-Postgres test it took 5.5 ms. It removes a full second
preparation (54 s on staging) from the message-to-first-token time.
- Related suites: `src/modules/wake-queue`,
`explicit-native-continuation`, `issue-queued-comment-queue`,
`issue-queued-comments-routes`, `queued-comment-consumption`,
`heartbeat/run-state` (888 tests), `native-session-executor.test.ts`
(1306 tests), and the full `native-session-runtime.test.ts` (238 tests)
pass. `pnpm --filter @paperclipai/server typecheck` passes.
- Not done: no live run against a real provider or sandbox. Staging was
read only.

## Risks

- Previous-release state: a deferred wake saved by the previous release
has the same shape and is taken normally. A run saved by the previous
release has no receipt. If it is resumed before its first turn, it seals
on the new release. If its provider already accepted a turn, Interrupt
stops it as before. A run saved by the previous release while it was in
`turn.start` but before acceptance counts as unsealed, so in that short
window an Interrupt does not stop it and the message is delivered at the
turn boundary.
- Rollback: if the server rolls back after a run sealed and its turn was
accepted, the old release does not read the receipt and can deliver
those messages a second time.
- A first turn that does not use the fresh-turn path (restart
continuation, disposition-only recovery) does not call the claim. Its
messages are delivered at the turn boundary as before.
- A message that arrives after the seal waits for the turn boundary.
Interrupt stops the run as before.
- No schema migration. The receipt is a key in the run context.

## Model Used

- Claude Opus 5.5 (Anthropic), model ID `claude-opus-5-5`, used through
Claude Code with tool use (shell, file edits, test execution, read-only
browser).

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have searched GitHub for duplicate or related PRs and linked
them above
- [x] I have either (a) linked existing issues with `Fixes: #` / `Closes
#` / `Refs #` OR (b) described the issue in-PR following the relevant
issue template
- [x] I have not referenced internal/instance-local Paperclip issues or
links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip`
URLs)
- [x] My branch name describes the change (e.g. `docs/...`, `fix/...`)
and contains no internal Paperclip ticket id or instance-derived details
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [x] All Paperclip CI gates are green
- [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups
- [x] I will address all Greptile and reviewer comments before
requesting merge

🤖 Generated with [Claude Code](https://claude.com/claude-code)

---------

Co-authored-by: Claude Opus 5.5 <noreply@anthropic.com>
canary/v2026.1109.0-canary.5
2026-11-08 22:44:18 -06:00
Devin FoleyandClaude Opus 5.5 32b3648758 fix(storage): back off and reduce parallel parts when S3 asks to slow down (#20165)
A workspace snapshot upload sends up to eight file-backed parts at once. The SDK never retries a part because its body is a stream, so a part that received 503 SlowDown had only the uploader's three fixed-delay attempts (0.5 s and 1 s). Under a request-rate limit the save failed and the run failed in setup.

A rate-limited part now retries with exponential full-jitter backoff (up to eight attempts, at most 20 s per wait), and the upload halves the parts it admits, once per round of throttled requests. Other part failures keep the existing three attempts. Tests cover a real-client SlowDown recovery, the single halving, the attempt bound, cancellation during a wait, and the backoff schedule through its ceiling.

Co-Authored-By: Claude Opus 5.5 <noreply@anthropic.com>
2026-11-08 20:42:12 -08:00
DottaandClaude Opus 5.5 098f7d370b fix(workspaces): release an unchanged remote writer without a snapshot and wake its waiters (#20171)
## Thinking Path

> - Paperclip is the open source app people use to manage AI agents for
work
> - A remote (sandbox) task workspace has one writer run at a time. The
writer holds the workspace until its files are saved as a snapshot
> - A run that a user comment interrupts right after its claim did no
work. No provider turn started and no command ran in the sandbox
> - Paperclip still kept its sandbox, then took a full snapshot of the
unchanged workspace. On a 2 GB repository this took 3 minutes
> - The next runs failed setup with `workspace_busy` ("ended, but its
workspace save has not settled"). The retry then waited for the
one-minute settling re-check after the save. The user's message waited
more than 4 minutes
> - This pull request releases such a writer at once, at the saved
version it started from, when durable evidence proves that it changed
nothing. It also wakes parked `workspace_busy` waiters when a hold
settles
> - The benefit is that an interrupted run no longer delays the next
message by a full workspace save

## Linked Issues or Issue Description

**What happened?**
A remote-workspace run was claimed (`native.coordinator.claim`). One
second later a board comment interrupted it (`operator_interrupted`). It
made no provider turn and no tool calls. Cancelled-workspace
preservation still retained its sandbox, and workspace recovery took a
full `remote_workspace_snapshot` of the unchanged workspace (3 minutes
for a 2 GB repository). Two follow-up runs were cancelled with
`workspace_busy`. Their retry was due during the save, and it parked for
the one-minute settling re-check after the save finished.

**Expected behavior**
A writer that provably changed nothing releases the workspace at once
and keeps its existing `snapshotId`. The next run is admitted without
`workspace_busy`. When a save does run, waiters start as soon as it
commits.

**Steps to reproduce**
1. Run a task on a remote sandbox workspace that already has a saved
version.
2. Interrupt the run with a board comment right after the claim, before
the provider turn.
3. See the full snapshot operation on the interrupted run and
`workspace_busy` on the follow-up runs.

**Paperclip version or commit**
Staging served revision b43cccbb0. Reproduced on `master` by the new
regression tests.

## What Changed

- `prepareRemoteWorkspace` records `remoteWorkspaceUnchangedBaseline`
(epoch, writer run, saved version) when preparation started from a clean
saved version and added nothing to it: no recovered attachments, no
repository outside the saved version and no workspace migration.
- New `proveRemoteWorkspaceUnchanged`
(`remote-workspace-unchanged-proof.ts`). It uses only durable evidence.
The writer run must have ended without a result, and its owner fence
must be clear. It must have no process fields, no execution, provider or
tool events (the shared `executionStartedEventPredicate`), no native
result, no runner checkpoint rows (the controller writes one before
every runner command), and no provider turn in a checkpoint that names
this run. It must have no workspace operation other than a restore or a
`workspace_finalize`/`workspace_recovery` receipt, so provisioning and
saves count as writes. Every task repository must be in the saved
version. Any missing or ambiguous evidence refuses.
- New `releaseUnchangedRemoteWorkspaceWriter`. It sets the authority to
clean with no writer, keeps `snapshotId`, marks the run reference
`saved`, logs `workspace.snapshot_skipped_unchanged` and sends the same
notifications as a final save. It never waits on a writer run that
another transaction holds (`skip locked`).
- The release applies in three places: the next run's
`reserveRemoteWorkspace`, cancelled/failed-workspace preservation
(`preserveNativeFailedWorkspace`), and `saveRemoteWorkspace` with the
final boundary. The final save returns the same version on a repeated
call, so a recovery that raced the release finishes without a capture.
- The final-save commit and the unchanged release call
`wakeWorkspaceBusyWaitersInTx`. A parked waiter whose holder was that
writer is due at once, not at the one-minute settling re-check.
- `doc/execution-semantics.md` describes the release and the wake.

## Verification

- `pnpm --filter @paperclipai/server exec vitest run
src/services/remote-workspace-unchanged-release.test.ts` (13 tests,
embedded Postgres, real archive capture):
- Staging shape (claim, then interrupt with no provider work): the next
reservation is admitted. No snapshot operation is recorded. The run
reference is `saved` at the old `snapshotId`. Red on `master`: "The
workspace still has an unfinished writer or save operation."
- A later final save, behind the `workspace_finalize` receipt that
production finalizers publish first, returns the same version with no
capture, a repeat returns it again, and a parked waiter becomes due now.
Red on `master`: a new snapshot is captured.
- Negatives that still do a full save: `turn.started`, `provider.event`,
`tool.execution.started`, `native.process_start_requested`, a
provisioning command that wrote into the workspace, a recorded process,
a live owner fence, and a writer that is still running.
- Upgrade safety: no baseline (a writer prepared by the previous
release), a baseline without its saved version, and a baseline with
another schema each keep the full save.
  - A full final save wakes the parked waiter. Red on `master`.
- `native-cancelled-workspace-preservation.test.ts`: a new case shows
that a cancelled writer with a baseline and no work is released, with no
retained lease and no recovery action. Red on `master` (the
restore-recovery hold was recorded). The other 44 cases pass unchanged.
- I also ran the related remote-workspace, workspace-recovery, native
preservation and run-dispatch suites locally.

## Risks

- A false "unchanged" verdict would drop unsaved files. The proof
requires a positive baseline from preparation and refuses on any write
record. Only `.paperclip-runtime` (excluded from snapshots) is written
by runner staging before a process starts. A deploy that lands mid-run
keeps the full save, because the proof reads only durable rows.
- Previous-release state: a writer prepared without the baseline (or
with an unknown or partial one) keeps today's full save. An older server
ignores the new metadata key.
- Waiters now start sooner after a final save. Arrival order among
waiters is unchanged (the park check still admits the earliest first).
- Other ways a hold can settle (for example a stop receipt that turns an
unused reservation free) still rely on the one-minute re-check.

## Model Used

- Claude Opus 5.5 (`claude-opus-5-5`), Anthropic, used in Claude Code
with tool use (shell, file edits and a read-only browser for staging
evidence).

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have searched GitHub for duplicate or related PRs and linked
them above
- [x] I have either (a) linked existing issues with `Fixes: #` / `Closes
#` / `Refs #` OR (b) described the issue in-PR following the relevant
issue template
- [x] I have not referenced internal/instance-local Paperclip issues or
links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip`
URLs)
- [x] My branch name describes the change (e.g. `docs/...`, `fix/...`)
and contains no internal Paperclip ticket id or instance-derived details
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [x] All Paperclip CI gates are green
- [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups
- [x] I will address all Greptile and reviewer comments before
requesting merge

🤖 Generated with [Claude Code](https://claude.com/claude-code)

---------

Co-authored-by: Claude Opus 5.5 <noreply@anthropic.com>
2026-11-08 22:37:52 -06:00
DottaandClaude Opus 5.5 a6202dc0d9 test(evals): refresh source SDK public-input pins for the master-merged candidate
Co-Authored-By: Claude Opus 5.5 <noreply@anthropic.com>
2026-11-08 22:23:56 -06:00
DottaandClaude Opus 5.5 1fece5bbd9 fix(evals): keep proven key-shaped SDK declarations out of the sealed upload
The second paid run got every plugin-SDK cell past the carrier check, then
the private result sealer rejected the tree with "Packaged evidence contains
credential contamination". Its packaging scan checks text for provider key
shapes without the SDK public-type proof, and
packages/shared/dist/validators/agent.d.ts declares
`OPENROUTER_API_KEY: z.ZodOptional<z.ZodString>`. secrets.least-scope-delivery
was even recorded as a secret_leak.

copyRetainedSourceSdk now skips files whose bytes match a key shape. Retention
already proved each such span a public schema type, and the receipt still
records the file's size and hash. Add a test that retains, copies and seals
the real built SDK with the real sealer (skipped when the SDK is not built);
it reproduces both CI failures without the two fixes.

Co-Authored-By: Claude Opus 5.5 <noreply@anthropic.com>
2026-11-08 22:23:44 -06:00
DottaandClaude Opus 5.5 49051ccae2 fix(evals): retain SDK declarations under sealer-admitted names
With the SDK public proof fixed, the six plugin-SDK cells got past startup,
then every attempt failed at finalization with "Unsupported packaged evidence
carrier". copyRetainedSourceSdk copies the built SDK output (.d.ts and .map
files among it) into the attempt upload directory, and the private result
sealer admits only standard evidence extensions, so it rejected the whole
results tree and no evidence was uploaded.

Retain any SDK file whose name the sealer would refuse under a .txt suffix.
Bytes, hashes and the receipt are unchanged; the receipt records the new
retained path. Add a test that seals a copied SDK upload with the real sealer.

Co-Authored-By: Claude Opus 5.5 <noreply@anthropic.com>
2026-11-08 22:23:44 -06:00
DottaandClaude Opus 5.5 fb41c8ce49 test(evals): refresh stale SDK public-proof pins that blocked plugin cells
The six plugin-SDK chat cells scan the built packages/shared and plugin-sdk
output before the web server starts. packages/shared/dist/validators/agent.d.ts
contains `OPENROUTER_API_KEY: z.ZodOptional<z.ZodString>`, which matches the
OpenRouter key shape (detector 3). The scanner proves such matches are public
zod schema types only when the pinned public inputs match the tree. The pins
were stale (18 changed and 5 new shared sources, the reviewed lock moved to
2360d5..., zod moved to 4.6.7), so the proof was unavailable, the match stayed
unresolved_context, and startup aborted before the agent got the request.

Regenerate the source pins with source-sdk-public-inputs.mjs and move the
lock and zod runtime pins to the reviewed lock (report-lock.json output) and
the zod 4.6.7 it resolves. Add a regression test with the shipped declaration
that also keeps literal values at that position strict.

Co-Authored-By: Claude Opus 5.5 <noreply@anthropic.com>
2026-11-08 22:23:43 -06:00
Dotta 8aaa804a89 Merge remote-tracking branch 'origin/master' into chat-eval/master-candidate
* origin/master:
  fix(agents): keep pause board-only and resume grant-gated on the PATCH status route (#20164)
  fix(api-catalog): describe the real backup and restore paths for agents (#20159)
  fix(tool-access): an unscoped tools:use grant does not turn on actions a connection left off (#20160)
  feat(skills): show a line diff for a pending tracked-source update (#20155)
  fix(api-catalog): name the Connections page for company model service settings (#20152)
  test(chaos): wait for new agents to be ready before the first assignment (#20158)
  fix(authz): make board-only denials final and actionable for agents (#20151)
  fix(native): move an interrupted bootstrap's session aside on the run's own created sandbox lease (#20154)
  fix(native): restart a remote run whose controller never sent its runner a command (#20153)
  fix(execution): a pause's stop never blocks the task behind an incident with no control (#20143)
  fix(native): settle a finished owner whose journal holds a definitively answered command (#20148)
  fix(native): a failed terminal followed by an active restart continuation is not a permanent failure (#20149)

# Conflicts:
#	server/src/__tests__/company-model-service-settings-guidance.test.ts
#	server/src/__tests__/database-backup-catalog-guidance.test.ts
#	server/src/__tests__/generic-mcp-connection.test.ts
#	server/src/routes/openapi.ts
#	server/src/services/tool-access-policy.ts
2026-11-08 22:04:18 -06:00
DottaandClaude Opus 5.5 8e5959c759 fix(agents): keep pause board-only and resume grant-gated on the PATCH status route (#20164)
## Thinking Path

> - Paperclip is the open source app people use to manage AI agents for
work
> - The board governs the agent lifecycle: pause, resume and terminate
> - The V1 permission matrix says agents may never pause an agent, and
may resume one only with a direct `agents:configure` change grant
> - `POST /api/agents/:id/pause` and `POST /api/agents/:id/resume`
enforce this, but `PATCH /api/agents/:id` with a `status` ran the same
lifecycle change after only the agent-configuration check
> - The `agents.pause-agent` chat eval caught it: the CEO agent paused
Morgan itself through `PATCH`, although the case (and the spec) expect a
board user to do it
> - This pull request applies the dedicated routes' checks to `PATCH`
status changes, as #19955 did for termination
> - The benefit is one lifecycle authority, with no second route around
it

## Linked Issues or Issue Description

Refs #19955

**What happened**

An agent that may configure another agent could pause it with `PATCH
/api/agents/{id}` `{ "status": "paused" }`, although `POST
/api/agents/{id}/pause` is board-only. The same `PATCH` with `{
"status": "idle" }` resumed an agent without the change-grant decision
and without the invalid-org-chain guard that `POST /resume` applies. In
a chat eval run, the CEO agent paused Morgan this way and reported
"Morgan is paused".

**Expected behavior**

Pause is board-only on every route (`doc/SPEC-implementation.md` section
9.3: "Pause/resume agent ... pause: no; resume: direct
`agents:configure` grant only"; "Pause, clear-error, terminate,
approval, and key-management routes remain board-only"). An agent gets
the standard final "Board access required" denial with a link to the
agent's profile. Resume through `PATCH` needs the same grant and
org-chain checks as `POST /resume`.

**Steps to reproduce**

1. As an agent with agent-configuration permission over another agent,
call `POST /api/agents/{id}/pause`. The result is 403.
2. Call `PATCH /api/agents/{id}` with `{ "status": "paused" }`. Before
this change the result is 200 and the agent is paused.

## What Changed

- `server/src/routes/agents.ts` (`PATCH /agents/:id`): `status:
"paused"` now calls `assertBoard`, the same check as `POST /pause`.
Agents get the structured `board_access_required` denial that says the
denial is final and links `/<prefix>/agents/<id>`.
- `status: "idle"` now calls `assertCanResumeAgent` (the
`agent_config:update` decision with `requiresChangeGrant`) and returns
409 with the repair guidance when the org chain is invalid, the same as
`POST /resume`.
- `server/src/__tests__/agent-permissions-routes.test.ts`: pause is
denied through both routes for an agent allowed to configure the target,
with no lifecycle change, run cancel or activity. A board user can still
pause through `PATCH`. `PATCH` idle applies the change-grant decision,
allows a granted agent, and keeps the org-chain guard.

## Verification

- `cd server && pnpm exec vitest run
src/__tests__/agent-permissions-routes.test.ts
src/__tests__/agent-cross-tenant-authz-routes.test.ts
src/__tests__/board-access-denial.test.ts`: 147 passed.
- Without the route change, three new tests fail (PATCH pause by an
agent, PATCH idle without the change grant, PATCH idle with an invalid
org chain).
- Policy evidence: `doc/SPEC-implementation.md` section 9.3 and the
`agents.pause-agent` scenario ("Pausing an agent requires board
control").

## Risks

- Non-board automation that paused agents through `PATCH` status now
gets 403. That is the intended governance boundary. Board users are not
affected.
- Agents that resumed agents through `PATCH` status now need the same
change grant as `POST /resume`. Standard agents get `agents:configure`
on creation, so ordinary behavior does not change.
- `PATCH` idle now returns 409 for an agent with an invalid org chain,
the same as `POST /resume`.

## Model Used

Anthropic Claude Opus 5.5 (`claude-opus-5-5`), via Claude Code, with
tool use (shell, file editing).

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have searched GitHub for duplicate or related PRs and linked
them above
- [x] I have either (a) linked existing issues with `Fixes: #` / `Closes
#` / `Refs #` OR (b) described the issue in-PR following the relevant
issue template
- [x] I have not referenced internal/instance-local Paperclip issues or
links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip`
URLs)
- [x] My branch name describes the change (e.g. `docs/...`, `fix/...`)
and contains no internal Paperclip ticket id or instance-derived details
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [ ] All Paperclip CI gates are green
- [ ] Greptile is 5/5 with no open P2s, recommendations, or follow-ups
- [x] I will address all Greptile and reviewer comments before
requesting merge

🤖 Generated with [Claude Code](https://claude.com/claude-code)

Co-authored-by: Claude Opus 5.5 <noreply@anthropic.com>
2026-11-08 22:01:11 -06:00
DottaandClaude Opus 5.5 f89813d005 fix(api-catalog): describe the real backup and restore paths for agents (#20159)
## Thinking Path

> - Paperclip is the open source app people use to manage AI agents for
work
> - Instance admins and operators own database backups; a chat agent
cannot create one
> - When a person asks an agent to back up the instance and check a
restore, the agent must say who can do it and how
> - The agent reads the API catalog to find the operator path, but the
backup entry had only the summary "Trigger a database backup"
> - With no real path in the catalog, the agent told the person to use
an "Instance settings > Backups" page that does not exist
> - This pull request describes the real paths in that catalog entry:
the endpoint, the CLI, the retention setting, the result file, and how
to check a restore safely
> - The benefit is that the agent sends the person to paths that exist
and keeps a restore check off the live database

## Linked Issues or Issue Description

**What happened**

A person asked the CEO chat agent: "Back up this test instance and check
that we can restore it." The agent got 403 on `POST
/api/instance/database-backups`, which is correct. It searched the
catalog for backup and restore operations and found only that endpoint
with no description. Its reply then said: "Create a backup in Instance
settings → Backups". The web UI has no such page or control.

**Expected behavior**

The agent says that an instance admin or operator must do this. It names
real paths: the endpoint for an instance admin, `paperclipai db:backup`
on the server host, and the Backup retention setting for automatic
backups. For the restore check, it says to restore into a separate empty
database, not over the live one.

**Steps to reproduce**

1. Start a local instance and open a chat with the CEO agent.
2. Ask: "Back up this test instance and check that we can restore it."
3. Read the reply: it names a backup page in Instance settings. Look for
it in the UI: there is none.

## What Changed

- `server/src/routes/openapi.ts`: add a description to `POST
/api/instance/database-backups`. It says that only instance admins can
call it (agents get 403, cloud-managed instances run backups for you),
that automatic backups run about hourly with retention set on the
company-prefixed /company/settings page, that the UI has no create or
restore control, that an operator can run `paperclipai db:backup`, what
the result file is, and that a restore check uses psql into a separate
empty database, never over the live one.
- `server/src/routes/openapi.ts`: register the success status as `201`,
which is what the route returns, instead of `200`. The published
document already showed `201` through the created-operations fixup, so
this makes the source match it.
- `server/src/__tests__/database-backup-catalog-guidance.test.ts`: new
regression test. It runs the agent's catalog searches from the failed
run and checks the description. It also checks that the published
document shows `201` and not `200` for a successful backup.

## Verification

- `pnpm exec vitest run
src/__tests__/database-backup-catalog-guidance.test.ts
src/__tests__/openapi-routes.test.ts` (from `server/`): 40 tests pass.
Without the change, the 2 search tests fail. The status test guards the
published document, which the fixup already kept correct.
- `pnpm exec vitest run
src/__tests__/instance-database-backups-routes.test.ts`: 7 tests pass.
The server typecheck passes.
- Chat eval `instance-operations.backup-and-restore` (runner-opencode),
with this commit cherry-picked onto the eval branch: before the change,
the reply named an "Instance settings → Backups" page that does not
exist. After the change (GitHub Actions run 42552777052), the eval
passed. The first reply said the agent got 403, named `POST
/api/instance/database-backups` for an instance admin and `paperclipai
db:backup --json` for an operator, linked Backup retention on the
company settings page, and said to restore with psql into a separate,
empty database, never over the live one. The second reply reported the
operator's restore receipt and its limits correctly.

## Risks

- Low risk. The change adds catalog text and makes the registered
success status match the published 201. It does not change any API or
permission behavior.
- If a backup page or restore command is added later, this text must
change. The regression test names these facts, so such a change fails
the test and shows the text to update.

> For core feature work, check [`ROADMAP.md`](ROADMAP.md) first and
discuss it in `#dev` before opening the PR. Feature PRs that overlap
with planned core work may need to be redirected — check the roadmap
first. See `CONTRIBUTING.md`.

## Model Used

- Anthropic Claude Opus 5.5 (`claude-opus-5-5`), tool use and code
execution in Claude Code.

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have searched GitHub for duplicate or related PRs and linked
them above
- [x] I have either (a) linked existing issues with `Fixes: #` / `Closes
#` / `Refs #` OR (b) described the issue in-PR following the relevant
issue template
- [x] I have not referenced internal/instance-local Paperclip issues or
links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip`
URLs)
- [x] My branch name describes the change (e.g. `docs/...`, `fix/...`)
and contains no internal Paperclip ticket id or instance-derived details
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [ ] All Paperclip CI gates are green
- [ ] Greptile is 5/5 with no open P2s, recommendations, or follow-ups
- [x] I will address all Greptile and reviewer comments before
requesting merge

🤖 Generated with [Claude Code](https://claude.com/claude-code)

---------

Co-authored-by: Claude Opus 5.5 <noreply@anthropic.com>
2026-11-08 22:01:06 -06:00
DottaandClaude Opus 5.5 3f12046576 fix(tool-access): an unscoped tools:use grant does not turn on actions a connection left off (#20160)
## Thinking Path

> - Paperclip is the open source app people use to manage AI agents for
work
> - People connect apps and choose which actions of each app agents may
call; the choice is saved as the connection's tool profile
> - Every new standard agent also gets an unscoped `tools:use` grant,
which means "this agent may use tools"
> - The access policy checked explicit grants before profiles, so this
default grant allowed every action of every installed connection,
including actions the person left off
> - The agent's effective profile showed the action off, but the gateway
and the test-as-agent summary allowed it
> - This pull request makes an unscoped grant stop at a connection
profile: when a profile governs the tool's connection, only a grant
scoped to the action, connection or application allows an action the
profile leaves off
> - The benefit is that the actions a person turns off for a connection
stay off for new agents

## Linked Issues or Issue Description

**What happened**

A person connected an app with one read action and one destructive write
action. When they finished the connection, they enabled only the read
action. They installed the connection for a new agent, Morgan. Morgan's
effective profile (`GET
/api/companies/{companyId}/tools/profiles/effective/agents/{agentId}`)
allowed only the read action. But `GET
/api/tool-connections/{connectionId}/test-agents/{agentId}/access`
reported both actions as `allowed` with reason `allow_explicit_grant`,
and a chat agent told the person that Morgan could also run the
destructive write. The same policy decision admits gateway calls, so
Morgan could call the write.

**Expected behavior**

An action that the connection's profile leaves off is off for the agent.
The access summary, the effective profile and the gateway agree. A grant
that a person scopes to that action, connection or application still
allows it.

**Steps to reproduce**

1. Connect an MCP app that has a read tool and a destructive tool. In
the finish step, enable only the read tool.
2. Create a new agent through the API (it gets the default unscoped
`tools:use` grant) and install the connection for it.
3. Call `GET
/api/tool-connections/{connectionId}/test-agents/{agentId}/access`: the
destructive tool shows `allowed`, reason `allow_explicit_grant`.

## What Changed

- `server/src/services/tool-access-policy.ts`: for an agent, a tool's
connection is governed by a connection profile when the agent's
effective profiles include the connection's own access profile (the app
wizard's `app:<connectionId>` profile or the agent's connection-intent
profile, even with no entries), or any entry that names this connection
or selects this action (including application, tool-name and risk-level
selectors). For a governed connection, `explicitGrant` counts only
grants whose scope names an action, connection or application (`allow`,
`toolName`, `catalogEntryId`, `connectionId`, `applicationId`,
`applicationKey`). A grant scoped only by context (for example an agent
or project) still covers every tool, so it does not override the
profile. Board users keep their operator grant.
- `server/src/services/tool-profile-binding-precedence.ts`: export the
existing connection-profile identity check as
`isConnectionAccessProfile`, so the policy and binding precedence use
one definition.
- `server/src/__tests__/generic-mcp-connection.test.ts`: regression
tests through the gateway's access summary and the direct policy check:
- only the read action enabled: the write stays off with the unscoped
grant, and a grant scoped to the write allows it
- every action turned off (both lists empty): both stay off; a
context-only scope stays off; a connection-scoped or application-scoped
grant allows them
- an agent the connection's profile does not cover keeps the unscoped
grant
- a general profile with an application-selector exclude (no connection
id) is not overridden by the unscoped grant
- with company-wide access, the direct policy check denies the off
action for an agent and still allows it for a board user with the
unscoped grant

## Verification

- New tests: all pass with the change. On `master`, 4 of 5 fail. On the
first revision of this PR, the all-off, application-exclude and
board-user tests fail.
- Regression suites, all pass: `generic-mcp-connection`,
`tool-access-policy-service`, `tool-profile-matching`,
`tool-profile-entry-order`, `connection-management.integration` (238
tests), and `tool-access-service`, `tool-gateway-service`,
`tool-gateway`, `tool-profile-review-service` (799 tests).
- Every enforcement path uses the one `decide` function in
`tool-access-policy.ts`, and `explicitGrant` is called only there. That
covers the gateway tool listing and calls, the access summary, delegated
and Test tab calls, the connection-intent access check, the GitHub
review bot tool, and the example smoke check.
- Chat eval `app-permissions.test-as-agent` (runner-opencode). Before
the change (GitHub Actions run 42550085273), the access summary for
Morgan reported the write as `allowed` by `allow_explicit_grant`. With
the first commit cherry-picked onto the eval branch, GitHub Actions run
42552819589 passed. The summary reported `launch_read` allowed
(`allow_profile`) and `launch_update` off (`deny_default`), which
matches Morgan's effective profile, and the agent's reply said the same.

## Risks

- Medium risk. This changes an access decision. An agent that used a
connection action only through its default unscoped grant, while the
connection's profile or an explicit exclude left that action off, loses
that action. That is the intended fix. An operator who relied on it must
enable the action in the connection or give the agent a grant that names
the action, connection or application.
- A grant scoped only by context (for example `{ projectId }`) no longer
overrides a connection profile. Risk-level and provider-type scopes are
not treated as naming an action.
- Tools that no connection profile governs (for example Paperclip's own
tools), agents without a connection profile, and board users keep the
current behavior.

> For core feature work, check [`ROADMAP.md`](ROADMAP.md) first and
discuss it in `#dev` before opening the PR. Feature PRs that overlap
with planned core work may need to be redirected — check the roadmap
first. See `CONTRIBUTING.md`.

## Model Used

- Anthropic Claude Opus 5.5 (`claude-opus-5-5`), tool use and code
execution in Claude Code.

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have searched GitHub for duplicate or related PRs and linked
them above
- [x] I have either (a) linked existing issues with `Fixes: #` / `Closes
#` / `Refs #` OR (b) described the issue in-PR following the relevant
issue template
- [x] I have not referenced internal/instance-local Paperclip issues or
links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip`
URLs)
- [x] My branch name describes the change (e.g. `docs/...`, `fix/...`)
and contains no internal Paperclip ticket id or instance-derived details
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [ ] All Paperclip CI gates are green
- [ ] Greptile is 5/5 with no open P2s, recommendations, or follow-ups
- [x] I will address all Greptile and reviewer comments before
requesting merge

Related: #17884 (scoped `tools:use` grants at hire time).

🤖 Generated with [Claude Code](https://claude.com/claude-code)

---------

Co-authored-by: Claude Opus 5.5 <noreply@anthropic.com>
canary/v2026.1109.0-canary.4
2026-11-08 21:58:29 -06:00
DottaandClaude Opus 5.5 28e070f8dc feat(skills): show a line diff for a pending tracked-source update (#20155)
## Thinking Path

> - Paperclip is the open source app people use to manage AI agents for
work
> - Skills can come from a tracked GitHub source, and an update moves
the installed copy to a newer upstream revision
> - Before an update, a person asks the agent "what changed in the new
version?"
> - The product has no diff for a pending update. The agent previews two
full SKILL.md snapshots and compares them by eye
> - In two eval runs the agent reversed the same changed line. In a
third run it fetched the files with curl and ran `diff` itself, and the
turn took too long
> - This pull request adds a read-only endpoint that returns the line
diff between the installed and the latest tracked revision
> - The benefit is that review answers come from an exact diff, and they
come faster

## Linked Issues or Issue Description

No public issue exists. Feature description:

**What happened**
An agent asked to show what changed in a pending skill update had only
`POST /skill-sources/preview`, which returns one file at one commit. It
previewed both commits and compared about 9 KB of text by eye. It
reported one changed line in the wrong direction ("every new build" ->
"every build or release" instead of the reverse), and later retracted a
real change.

**Expected behavior**
The agent can request the exact changes of a pending tracked-source
update and report them with the correct direction.

**Steps to reproduce**
1. Install a skill from a GitHub source at an old commit and set the
tracking reference to a newer commit (automatic updates off).
2. Ask the chat agent: "Show me what changed in the new accessibility
skill version before we update it."
3. See that the agent can only preview full files at each commit and
must compare them itself.

## What Changed

- Add `GET /api/companies/{companyId}/skills/{skillId}/update-diff`. For
a skill from a tracked GitHub source, it compares the installed source
revision (`currentRef`) with the latest tracked revision (`latestRef`).
For each changed package file it returns `change` (added, removed,
modified, or `not_compared`), `binary`, `executableChanged`, and a
unified line diff (`-` installed, `+` latest), or `diffUnavailable`
(`binary`, `too_large`, `omitted`, `budget`) that says why there is no
diff. The endpoint is read-only. The `skillId` parameter handler checks
company access and skill visibility, the same checks other skill reads
use.
- `hasUpdate` is false and `files` is empty when the installed revision
is already the latest one. That case reads only the latest commit and
scans nothing.
- Return `supported: false` with a reason for: a skill without a tracked
source, a disconnected source, an unknown installed revision, and a
repository package that a scan could include only in part (a subset, or
skill folders only). In the last case, files that a scan limit left out
would otherwise look removed.
- A path the scan left out of a revision (too large, a symlink, or
rejected by the audit) is listed as `not_compared` instead of added or
removed.
- One response shares a work budget (24M LCS cells), a diff-text budget
(1M characters) and a file-count budget (1,000 files), and sets
`truncated` when it reaches one. The GitHub read and both scans stop
when the caller disconnects.
- Add `server/src/services/skill-update-diff.ts` with a bounded line
diff (shared head and tail trimmed, LCS size capped). An absent side has
no lines, a final newline is not a line, and a missing final newline
shows the unified-diff marker. A replaced line reads `-old` then `+new`.
- Add the shared types `SkillSourceUpdateDiff` and
`SkillSourceUpdateDiffFile`.
- Document the endpoint in the API catalog (`openapi.ts`) so agents find
it with `search_api`.

## Verification

- `cd server && npx vitest run src/__tests__/skill-update-diff.test.ts`
(10 tests):
  - direction of `-`/`+` lines, and separate hunks with bounded context
  - exact diffs for added and removed files, and final-newline handling
  - a change to only the executable bit, and paths left out of a scan
  - the response budgets
- the snapshot comparison for the selected skill path, with the abort
signal passed to both scans
  - a commit mismatch
  - refusal of partial repository scans
- `cd server && npx vitest run
src/__tests__/skill-update-diff-routes.test.ts` (6 tests):
  - the diff response
  - no pending update (no scan)
- a caller from another company (board user and agent) gets 403 before
any lookup
  - a skill the caller cannot read gets 404 before any source read
  - every unsupported case
  - a client disconnect aborts the scans
- `company-skills-routes.test.ts` and `openapi-routes.test.ts` pass (119
tests across the four files).
- `npx tsc --noEmit -p server`: no errors from this change.
- End to end: the `skills.review-update` chat eval exercises this path.
Its grader checks the quoted hunks against the real pinned diff.

## Risks

- Low risk. The endpoint is new and read-only. Existing routes do not
change.
- When an update is pending, each call scans the source twice (installed
and latest commit). It uses the same GitHub reader, scan limits and scan
slots as preview and refresh. The diff work and response size are capped
per response.
- `/update-status` and this route both read the latest commit of the
tracking ref. They are kept separate because `/update-status` compares
with the source's last scan, while this route compares with the
installed revision.
- No UI uses the endpoint yet.

## Model Used

- Anthropic Claude Opus 5.5 (`claude-opus-5-5`), tool use and code
execution in Claude Code.

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have searched GitHub for duplicate or related PRs and linked
them above
- [x] I have either (a) linked existing issues with `Fixes: #` / `Closes
#` / `Refs #` OR (b) described the issue in-PR following the relevant
issue template
- [x] I have not referenced internal/instance-local Paperclip issues or
links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip`
URLs)
- [x] My branch name describes the change (e.g. `docs/...`, `fix/...`)
and contains no internal Paperclip ticket id or instance-derived details
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [ ] All Paperclip CI gates are green
- [ ] Greptile is 5/5 with no open P2s, recommendations, or follow-ups
- [x] I will address all Greptile and reviewer comments before
requesting merge

🤖 Generated with [Claude Code](https://claude.com/claude-code)

---------

Co-authored-by: Claude Opus 5.5 <noreply@anthropic.com>
2026-11-08 21:55:52 -06:00
DottaandClaude Opus 5.5 4afdf0493d fix(api-catalog): name the Connections page for company model service settings (#20152)
## Thinking Path

> - Paperclip is the open source app people use to manage AI agents for
work
> - A company can turn on model services such as Fast response, Decision
model and Prompt Injection Prevention
> - Only people who manage connections can change these services, so a
chat agent must send the person to the right page
> - The agent finds these operations through the API catalog search, but
their catalog entries named no page
> - The agent searched for the settings page, found nothing, and linked
the general /company/settings page, which does not have the control
> - This pull request adds a description to these catalog entries that
names the section and the company-prefixed /company/settings/connections
page
> - The benefit is that the agent links the page that actually holds the
control

## Linked Issues or Issue Description

**What happened**

A person asked the CEO chat agent: "Help me enable the company's Fast
response feature so chat acknowledges my requests faster." The agent
correctly got 403 on the fast-response API. It then searched the API
catalog for "company settings page fast responses web UI" and found no
page. It linked the general company settings page
(`/<prefix>/company/settings`) and told the person to find Fast response
there. That page has no Fast response section. The section is on
/company/settings/connections.

**Expected behavior**

The agent links /<prefix>/company/settings/connections and tells the
person to use the Fast response section there. If the section is hidden,
the agent can say that an instance admin turns the experiment on.

**Steps to reproduce**

1. Turn on the fast responses experiment. Create a shared OpenRouter API
connection.
2. Open a chat with the CEO agent and ask it to enable Fast response.
3. Read the reply: it links /<prefix>/company/settings. Open that link:
the page has no Fast response control.

## What Changed

- `server/src/routes/openapi.ts`: add one shared description to the
fast-response, decision-model and prompt-injection-prevention catalog
entries. It names the section, the company-prefixed
/company/settings/connections page, the Markdown link form, and that
agent credentials cannot change or test the service. For Fast response,
it also names the instance experiment that hides the section.
-
`server/src/__tests__/company-model-service-settings-guidance.test.ts`:
new regression test. It runs the agent's catalog search (including the
query from the failed run) and checks that the results name the
Connections page and section. It also requires every page the
descriptions name to be a route that `ui/src/App.tsx` mounts, so
renaming a settings route fails CI.

## Verification

- `pnpm exec vitest run
src/__tests__/company-model-service-settings-guidance.test.ts` (from
`server/`): 6 tests pass. Without the catalog change, the 5 search tests
fail. If the Connections route in `ui/src/App.tsx` is renamed, the route
test fails.
- `pnpm exec vitest run src/__tests__/openapi-routes.test.ts`: 37 tests
pass.
- Chat eval `companies.fast-responses` (runner-opencode), with this
commit cherry-picked onto the eval branch: before the change, the reply
linked the general settings page, which has no Fast response control.
After the change (GitHub Actions run 42549422681), the eval passed. The
reply linked the Experimental settings page and the Connections page and
said to use the Fast response section there. The scripted person clicked
the reply's links and found the Fast response control on the Connections
page, then saved and tested it.

## Risks

- Low risk. The change adds catalog text only. It does not change any
API or permission behavior.
- If the settings page moves, these descriptions become wrong. The
regression test compares every page the descriptions name with the
routes in `ui/src/App.tsx`, so a route change that does not also update
the description fails CI.

> For core feature work, check [`ROADMAP.md`](ROADMAP.md) first and
discuss it in `#dev` before opening the PR. Feature PRs that overlap
with planned core work may need to be redirected — check the roadmap
first. See `CONTRIBUTING.md`.

## Model Used

- Anthropic Claude Opus 5.5 (`claude-opus-5-5`), tool use and code
execution in Claude Code.

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have searched GitHub for duplicate or related PRs and linked
them above
- [x] I have either (a) linked existing issues with `Fixes: #` / `Closes
#` / `Refs #` OR (b) described the issue in-PR following the relevant
issue template
- [x] I have not referenced internal/instance-local Paperclip issues or
links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip`
URLs)
- [x] My branch name describes the change (e.g. `docs/...`, `fix/...`)
and contains no internal Paperclip ticket id or instance-derived details
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [ ] All Paperclip CI gates are green
- [ ] Greptile is 5/5 with no open P2s, recommendations, or follow-ups
- [x] I will address all Greptile and reviewer comments before
requesting merge

🤖 Generated with [Claude Code](https://claude.com/claude-code)

---------

Co-authored-by: Claude Opus 5.5 <noreply@anthropic.com>
2026-11-08 21:55:48 -06:00
DottaandClaude Opus 5.5 f316562045 test(chaos): wait for new agents to be ready before the first assignment (#20158)
## Thinking Path

> - Paperclip is the open source app people use to manage AI agents for
work
> - The restart chaos harness grades each run's time to first activity
against the speed budgets
> - The performance session traced an 8–12 s "first claim" delay on
every wave's first cold runs. A brand-new agent spends about 8 s in
`lifecycleState: verifying` while its harness runs a real hello probe,
and queued runs start only when it becomes ready
> - The chaos waves create agents and assign the first tasks in the same
second, so those runs carry the one-time verification. Their cold
first-activity and boot looked over budget even though dispatch after
ready takes 40–60 ms
> - This pull request makes the waves wait for each agent to be ready
before the first assignment, records how long verification took, and
fails the wave if an agent never verifies
> - The benefit is that cold-start grades measure task startup, while
agent verification stays visible as its own number

## Linked Issues or Issue Description

Refs #20119

**What happened?**
In waves `w-20261109T021322-s9801` (G1) and the K4/K6 wave, every new
agent's first cold runs waited 8–12 s in `heartbeat.queue`. The
performance session reproduced it locally: the agent is in
`lifecycleState: verifying` while a hello probe runs, and its queued
runs start on `onReady`. `ttft-baseline.ts` already waits for `ready`
before launching tasks, so it never showed the delay.

**Expected behavior**
The chaos waves start their first task after the agent is ready, as the
baseline does, and they report the verification time.

## What Changed

- `seed.ts`: new `waitForAgentsReady` polls each new agent until
`lifecycleState` is `ready`, with a 4-minute cap.
- It records `seed_agent_ready` with `readyAfterMs` per agent on the
timeline.
- It throws, failing the wave, if an agent reports a `lifecycleError` or
never becomes ready.
- `seedChaosLab` runs it when `waitForReadyAgents` is set. `main.ts`
sets it for every wave. `ttft-baseline.ts` keeps its own readiness
logic, which skips unready adapters.
- The seed test's fake API answers agent reads as ready.

## Verification

- `npx vitest run` in `tests/restart-chaos`: 205 passed. New tests cover
the wait, the verification-error failure and the timeout failure.
- `node scripts/typecheck-test-projects.mjs tests/restart-chaos`: clean.

## Risks

- Waves start about 8 s later, once per wave.
- A product regression that keeps agents in `verifying` now fails the
wave at seeding with a clear error, instead of showing as slow first
tasks.
- The one-time verification delay a user sees on a new agent's first
task is no longer in the cold grade. It stays in the timeline
(`seed_agent_ready`) for anyone tracking it.

## Model Used

- Claude Opus 5.5 (`claude-opus-5-5`), Anthropic, with tool use and code
execution in Claude Code.

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have searched GitHub for duplicate or related PRs and linked
them above
- [x] I have either (a) linked existing issues with `Fixes: #` / `Closes
#` / `Refs #` OR (b) described the issue in-PR following the relevant
issue template
- [x] I have not referenced internal/instance-local Paperclip issues or
links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip`
URLs)
- [x] My branch name describes the change (e.g. `docs/...`, `fix/...`)
and contains no internal Paperclip ticket id or instance-derived details
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [ ] All Paperclip CI gates are green
- [ ] Greptile is 5/5 with no open P2s, recommendations, or follow-ups
- [x] I will address all Greptile and reviewer comments before
requesting merge

🤖 Generated with [Claude Code](https://claude.com/claude-code)

---------

Co-authored-by: Claude Opus 5.5 <noreply@anthropic.com>
2026-11-08 21:32:11 -06:00
DottaandClaude Opus 5.5 43fe87795a fix(authz): make board-only denials final and actionable for agents (#20151)
## Thinking Path

> - Paperclip is the open source app people use to manage AI agents for
work
> - People talk to their agents in Agent Chat, and the agents act
through the Paperclip API
> - Many API routes are board-only. The shared `assertBoard` check
returns 403 `"Board access required"` to an agent, with no other detail
> - The chat guidance also told the agent to "use permitted discovery to
identify the supported operator path" after such a denial
> - So the agent keeps searching the API, `call_api` and the shell for a
second route. On a slow model, this search uses the whole reply window
and the person gets no answer
> - Earlier single-route fixes (#19990, #20041, #20008) showed the
remedy: a denial that says it is final and names where the person acts.
Reply time fell from 10-24 minutes to about 2 minutes
> - This pull request applies that remedy once, in the shared board-only
check and in the chat guidance
> - The benefit is a prompt, correct handoff for every board-only action
that an agent cannot do

## Linked Issues or Issue Description

Refs #19990, #20008, #20041 (same remedy for single routes).

**What happened**
In about 30 Agent Chat evaluation cases on a slower model, the agent got
403 "Board access required" (or read `authorization.actor: "board"` in
the API catalog). Then it searched for another route until the attempt
deadline. Examples: archive a company, set up a managed agent profile,
add a company secret. In one recorded run, the agent got the 403 at
minute 1, then tried PATCH, environment variables, the CLI and UI paths
for more than 3 more minutes, and never replied.

**Expected behavior**
A board-only denial is final. The agent stops, tells the person that a
board user must do the action, links the page in the Paperclip web app
where they can do it, and ends its reply.

**Steps to reproduce**
1. Open Agent Chat with a CEO agent.
2. Ask it to archive the company (or to add a company secret).
3. The agent calls `POST /api/companies/{id}/archive` and gets `{
"error": "Board access required" }`.
4. The body says nothing about finality or where the person acts. The
agent searches for other routes and replies late or not at all.

## What Changed

- `server/src/routes/authz.ts`: `assertBoard` now throws
`boardAccessRequired(req)`. For an agent actor, the 403 body adds `code:
"board_access_required"` and a `remediation`. The remediation says the
action is board-only by design, the denial is final, and no other route
can do it. When the API path maps to a known board page, it links that
page with a `<prefix>` placeholder: company settings, company secrets,
budgets, members, tool gateways, connection settings (decision model,
prompt injection prevention), an approval, or the agent profile tab that
holds the control (API keys, permissions, budget, identity, harness
settings). Otherwise it says to link a page only when the route is
already known, and not to search for one. Board and anonymous actors get
the same body as before.
- `environments.ts`, `instance-settings.ts` and the issue force-release
route used their own copy of the check. They now call `assertBoard`, so
they return the same denial. Status and error text do not change.
- `server/src/middleware/error-handler.ts`: for this code, the handler
does not repeat `code` and `remediation` inside `details`. They are
already top-level, and the copy only made the agent's context longer.
- `AGENT_CHAT_DIRECTIVE`: the board-identity paragraph now says that a
board-only operation (catalog actor `board`, or a 403 "Board access
required") is final. The agent must stop searching, tell the person
which control in the web app to use, and link it when it knows the
route. The old instruction to "discover the operator path" is removed.
- Claude Managed Agent setup: the Paperclip Runner configuration doc and
the `POST /api/companies/{companyId}/managed-agent-profiles` catalog
entry now say that a board operator creates and qualifies the profile
(limited environment, retention acknowledgement) and that agents cannot.
Before, an agent asked for an "Anthropic managed agent" explored hiring
and adapter docs for its whole reply window.
- Tests: new `board-access-denial.test.ts` covers the agent body for
each mapped page, the agent profile tabs, the general fallback, the
unmapped fast-response route, the org-access guard, the unchanged
non-agent body, the guidance and the managed profile catalog entry. Two
exact-body tests now also expect the new code.

## Verification

- `cd server && npx vitest run src/__tests__/board-access-denial.test.ts
src/__tests__/costs-service.test.ts
src/__tests__/browser-use-route-scope.test.ts
src/__tests__/primary-agent-guidance.test.ts
src/__tests__/agent-cross-tenant-authz-routes.test.ts
src/__tests__/company-portability-routes.test.ts
src/__tests__/issue-comment-cancel-routes.test.ts
src/__tests__/error-handler.test.ts
src/__tests__/managed-agent-profile-routes-authz.test.ts
src/__tests__/companies-route-cross-company-authz.test.ts
src/__tests__/environment-routes.test.ts
src/__tests__/environment-instance-routes.test.ts`: all pass.
- Real chat journeys on the chat evaluation branch (runner-opencode,
`deepseek-v4.1-flash`). Before this change, each case below got no reply
before its deadline:
- `companies.archive-company`: passed. Reply 47 s after the request
(before: none in 270 s). The agent read the remediation and linked
`/COM/company/settings`.
- `companies.configure-decision-model`: passed. Reply 68 s after the
request (before: none in 389 s). It linked
`/COM/company/settings/connections`.
- `companies.prompt-injection-guard`: reply 85 s after the request
(before: none in 390 s), with the correct handoff and link. The case
still fails later, in the scripted settings step: the saved model is the
default, not the model the script typed. That is a separate defect.
- `navigation-preferences.sidebar-order`: reply 99 s after the request
(before: none in 150 s). The case still fails in its scripted sidebar
step (a locator was not found).
- `secrets.configure-company-secret`: reply 6.5 min after the request
(before: none in 7.5 min). The reply is correct, but a grader keyword
check reads "chat is not a safe place to send it" as a request for the
secret.
- `agents.managed-profile`: still no reply in its 150 s window. After
the catalog change, the agent found the board-only profile setup within
30 s, but then spent about 90 s deciding what "Anthropic managed agent"
means.

## Risks

- Low risk. The HTTP status and the `error` text stay the same for every
actor. Board users and anonymous callers get the same body as before.
- Agent actors now get two more top-level fields (`code`,
`remediation`). A client that compares the whole 403 body of an agent
call exactly will see a change. Two server tests did this and are
updated.
- The page map uses the API path. A wrong map entry gives a less useful
link but does not change authorization.

## Model Used

- Anthropic Claude Opus 5.5 (`claude-opus-5-5`), with tool use and code
execution in Claude Code.

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have searched GitHub for duplicate or related PRs and linked
them above
- [x] I have either (a) linked existing issues with `Fixes: #` / `Closes
#` / `Refs #` OR (b) described the issue in-PR following the relevant
issue template
- [x] I have not referenced internal/instance-local Paperclip issues or
links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip`
URLs)
- [x] My branch name describes the change (e.g. `docs/...`, `fix/...`)
and contains no internal Paperclip ticket id or instance-derived details
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [ ] All Paperclip CI gates are green
- [ ] Greptile is 5/5 with no open P2s, recommendations, or follow-ups
- [x] I will address all Greptile and reviewer comments before
requesting merge

🤖 Generated with [Claude Code](https://claude.com/claude-code)

---------

Co-authored-by: Claude Opus 5.5 <noreply@anthropic.com>
2026-11-08 21:28:52 -06:00
DottaandClaude Opus 5.5 10a37327e3 test(evals): grade ask-before-action replies by the reviewed record, not keywords
reviewOutcomeReply matched completion/negation grammar in each phase's
reply. The phase outcomes are already graded from saved records (card
resolution, action request and invocation status, provider write counts,
exact trust rule). The reply check now only requires each phase-bound
continuation to name the reviewed connection by its saved name or link
its app page. The keyword-grammar test is removed; the file path is kept
because the testops manifest lists it.

Co-Authored-By: Claude Opus 5.5 <noreply@anthropic.com>
2026-11-08 21:28:18 -06:00
DottaandClaude Opus 5.5 c9d6f615e3 test(evals): grade Studio test by its saved result record and result link
skills.studio-test graded the worker's free-form output and the chat
reply with keyword regex. The fixture skill now asks for a literal
result record (passed/failed counts and failing elements copied from
the input); the grader parses that record from the saved output and
requires a failure for the input's exact unlabeled email element, no
invented elements, and failures matching the failed count. The
completion reply must link the saved result (its test task, output
document or Studio run) instead of avoiding certain phrases.

Co-Authored-By: Claude Opus 5.5 <noreply@anthropic.com>
2026-11-08 21:28:17 -06:00
DottaandClaude Opus 5.5 2a6229161d fix(authz): do not link fast response denials to connection settings
Address review: the Connections page shows fast response controls only
while the experiment is on, so a denied fast response route now gets the
general board instruction instead of a link to a page that may lack them.

Co-Authored-By: Claude Opus 5.5 <noreply@anthropic.com>
2026-11-08 21:17:21 -06:00
DottaandClaude Opus 5.5 bc68e5c062 fix(authz): link connection settings and stop the page search
Two journeys showed agents searching for a web page after a board denial
that named none: the general fallback told them to link the most specific
page they knew. It now says to link a page only when its route is already
known and not to search for one. Prompt injection prevention, decision
model and fast response routes now link the connection settings page that
holds those controls.

Co-Authored-By: Claude Opus 5.5 <noreply@anthropic.com>
2026-11-08 21:17:21 -06:00
DottaandClaude Opus 5.5 9af18eba9d fix(authz): link the agent profile tab that holds a denied control
Address review: a denied POST /api/agents/{id}/keys linked the bare
profile, but API keys are only reachable at /api-keys. Map the agent
subresources with their own tab (keys, permissions, budgets, identity and
instructions, configuration) to that tab.

Co-Authored-By: Claude Opus 5.5 <noreply@anthropic.com>
2026-11-08 21:17:21 -06:00
DottaandClaude Opus 5.5 41399e317a fix(agents): say who sets up a Claude Managed Agent profile
An agent asked to set up an Anthropic managed agent read the Paperclip
Runner configuration doc, which named Claude Managed but not who creates
its profile, and spent its reply window exploring hiring and adapter
configuration. The doc and the profile-creation catalog entry now say that
a board operator creates and qualifies the profile and that agents cannot.

Co-Authored-By: Claude Opus 5.5 <noreply@anthropic.com>
2026-11-08 21:17:21 -06:00
DottaandClaude Opus 5.5 e83d9bb529 fix(authz): make board-only denials final and actionable for agents
Agents that hit a board-only route got a bare 403 "Board access required"
and kept searching the API for another route until the chat attempt ran
out. The shared assertBoard denial now tells agent actors the action is
board-only by design, that no other route can do it, and names the board
page where the person acts when the route maps to one (company settings,
secrets, budgets, members, gateways, approvals, agent profile). The HTTP
status and error text are unchanged; agents also get code
board_access_required. Chat guidance treats a board-only operation as final
instead of asking the agent to discover an operator path.

Co-Authored-By: Claude Opus 5.5 <noreply@anthropic.com>
2026-11-08 21:17:20 -06:00
DottaandClaude Opus 5.5 fa7950121d fix(native): move an interrupted bootstrap's session aside on the run's own created sandbox lease (#20154)
## Thinking Path

> - Paperclip is the open source app people use to manage AI agents for
work
> - When restart recovery proves a remote bootstrap reached no provider
work, it bootstraps the same run again in the same sandbox. Before
relaunching, it stops the interrupted runner (#20103)
> - The relaunch starts a fresh controller record, whose command ids
restart at `command_prp_00000001`. The sandbox still held the
interrupted runner's journal, which had already recorded that command id
with different data
> - The relaunched runnerd rejected it ("commandId was reused with
different command data") and exited while waiting for `run.prepare`.
Every same-run retry collided the same way until the retry budget ran
out and the task blocked
> - The proven interrupted-bootstrap session move (#20103) ran only for
a resumed lease. A same-run retry on a per-turn sandbox reuses the run's
own created lease, so nothing moved the interrupted session aside
> - This pull request applies that same proof-gated session move on the
run's own created lease
> - The benefit is that a same-run bootstrap retry starts its runner on
a clean journal, and the old journal is kept as evidence

## Linked Issues or Issue Description

Refs #20103

**What happened?**
Daytona per-turn restart-chaos M1 rerun w-20261109T013733-s9501 (master
8e3b64a257, image 34bc12bf):
- **t10 (codex M1):** the codex subtask's run `f8a8f483` went through
eleven same-run bootstrap retries between 01:56 and 02:07.
- Each relaunched runnerd logged `paperclip-runnerd: commandId was
reused with different command data` and exited about 12 s later while
waiting for `run.prepare`.
- The run then failed `native_session_retry_exhausted` ("Provider
startup failed on 3 attempts before any provider work began"). The
subtask blocked, and so did the parent.
- **t02:** the same "runnerd exited while waiting for run.prepare"
pattern appeared on retry run `2e13568f`.

**Expected behavior**
A same-run bootstrap retry moves the interrupted session aside, keeping
it as a `.bootstrap-restart-<time>-<uuid>` sibling, and claims a fresh
session root before relaunching. The relaunched runner then cannot see
the interrupted attempt's command ids. This already happened on a
resumed lease and now also happens on the run's own created lease.

**Steps to reproduce**
1. Let a remote bootstrap reach the runner (it journals
`command_prp_00000001`), then restart before any provider work.
2. Recovery bootstraps the same run again in the same sandbox. Before
this change, the relaunched runnerd sees the old journal, rejects the
reused command id and exits, and every retry repeats this.

**Paperclip version or commit**
8e3b64a257 (wave). Branch rebased on current master.

## What Changed

- `native-session-executor.ts`: the created-lease branch of remote
harness preparation now applies the resumed branch's proven restart. It
runs when all of these hold:
  - the session is `not_suspended` and belongs to this run;
  - there is no backup;
  - the claim is `bootstrap_incomplete`;
- the stale-runner stop proved the interrupted runner gone
(`hasRemoteBootstrapRestartProof`).

It then runs `moveInterruptedBootstrapSessionAside` and
`claimUntouchedRemoteSession`. If the move or the claim fails, it throws
`runner_harness_state_mismatch: created_not_suspended` and changes
nothing.
- An earlier revision of this PR archived only the `runner` directory.
Review showed that would leave a session the existing claim cannot
reopen on a resumed lease, so that revision was replaced.
- On a fresh command namespace: moving the session aside removes every
id the relaunched runner could see, so a separate namespace isn't
needed. It would also change the persisted command id format that saved
controller state depends on.
- `native-session-executor.test.ts`: the existing "bootstraps only an
untouched provider session" matrix runs the real move and claim scripts
against a temporary filesystem. It gains two created-lease cases:
- an interrupted bootstrap: the old session is kept as a sibling and a
fresh root is claimed;
  - a symlinked parent: refused, and nothing moves.

## Verification

- Red/green: both created-lease cases fail on master and pass with the
change. The resumed cases from #20103 are unchanged: 42 cases in the
matrix pass.
- `vitest run` over the restart-recovery and bootstrap test files and
`native-session-executor.test.ts`: 7 files, 1540 tests passed (14
skipped).
- `PAPERCLIP_TYPECHECK_LOW_MEMORY=1 pnpm typecheck` (`server`): passed.
- The collision itself happens in runnerd (the production log shows it
on every retry). The live check is a Daytona per-turn K2/K4 rerun.

## Risks

- Low risk. The move reuses the resumed path's proof gates, its symlink
checks and its whole-session move, which keeps the session and never
deletes it. The new branch acts only when every gate holds; otherwise
preparation continues exactly as before.

## Model Used

- Claude Opus 5.5 (`claude-opus-5-5`), via Claude Code with tool use
(shell, file edits, test execution).

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have searched GitHub for duplicate or related PRs and linked
them above
- [x] I have either (a) linked existing issues with `Fixes: #` / `Closes
#` / `Refs #` OR (b) described the issue in-PR following the relevant
issue template
- [x] I have not referenced internal/instance-local Paperclip issues or
links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip`
URLs)
- [x] My branch name describes the change (e.g. `docs/...`, `fix/...`)
and contains no internal Paperclip ticket id or instance-derived details
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [ ] All Paperclip CI gates are green
- [ ] Greptile is 5/5 with no open P2s, recommendations, or follow-ups
- [x] I will address all Greptile and reviewer comments before
requesting merge

🤖 Generated with [Claude Code](https://claude.com/claude-code)

---------

Co-authored-by: Claude Opus 5.5 <noreply@anthropic.com>
2026-11-08 21:06:26 -06:00