Commit Graph
6420 Commits
Author SHA1 Message Date
DottaandPaperclip 16a646ba7a fix(workspaces): preserve detached work and journaled Git sources
Reject retained worktree paths and orphan indexes before branch-only import. Revalidate the source path from interrupted migration journals. Use the cleanup producer command formatter for clean user-owned removal receipts.

Co-Authored-By: Paperclip <noreply@paperclip.ing>
2026-11-04 22:05:39 -06:00
DottaandPaperclip b28f72ef44 fix(workspaces): retain private objects and clean user-owned branch receipts
Co-Authored-By: Paperclip <noreply@paperclip.ing>
2026-11-04 22:05:38 -06:00
DottaandPaperclip 65a0116b96 fix(workspaces): preserve retained branches when private checkouts are gone
Co-Authored-By: Paperclip <noreply@paperclip.ing>
2026-11-04 22:04:33 -06:00
DottaandClaude Opus 5.5 06826915d7 fix(dispatch): park a workspace-busy wait instead of recreating runs (#19143)
## Thinking Path

> - Paperclip is the open source app people use to manage AI agents for
work.
> - Child tasks can reuse their parent's execution workspace. Only one
run at a time may write in a shared sandbox workspace.
> - A run that finds the workspace held by another live run waits with a
`workspace_busy` scheduled retry.
> - That wait cancelled the run and created a new retry run every 60–120
seconds, until the holder ended. Each check made one cancelled run
record.
> - Three sibling tasks that waited for a parent made 15 cancelled runs
in 13 minutes. They also got the workspace in random order, not in
arrival order.
> - This pull request keeps the waiting run as one parked retry while
its holder is live, and wakes it when the holder ends.
> - The benefit is a clean run history, a prompt handoff, and fair
arrival-order access to a shared workspace.

## Linked Issues or Issue Description

Refs #18691 (the workspace wait for a live holder). Refs #19075 (sends a
stopped writer with a pending save into the same wait). Refs #12587 (an
earlier proposal about fairness for this retry).

**What happened?**
A parent task delegated three subtasks that inherit its execution
workspace. Each subtask run was created, then cancelled with
`workspace_busy` ("Shared execution workspace is busy: run … is still
running"), then created again about every 1.5–2 minutes. One subtask got
8 cancelled runs, one got 5, and one got 2. Every cancellation named a
holder that was really running: first the parent run, then the sibling
that got the workspace. So serialization was correct. The cost was the
churn of run records, and the subtask that waited first ran last.

**Expected behavior**
A run that needs a busy shared workspace waits as one durable record. It
continues when the holder finishes. Siblings that wait for one workspace
get it one at a time, in arrival order. Two writers never share the
workspace, and the user can still stop a waiting run.

**Steps to reproduce**
1. Bind two or more issues to one shared execution workspace in a
sandbox environment.
2. Keep a run live on one issue (the holder).
3. Wake the other issues. Before this change, each due check promotes
the retry, cancels it with `workspace_busy`, and creates a new retry
run. After this change, the retry stays parked until the holder ends.

**Paperclip version or commit**
Observed on staging at `53735db7`. The code is unchanged on `master`.

## What Changed

- `finalizeWorkspaceBusyDeferral` records
`contextSnapshot.workspaceBusyWait` = `{ key, holderRunId, waitingSince
}`. The key is `execution:<id>` or `project:<id>`. `waitingSince`
carries over when the run defers again for the same workspace.
- New `server/src/modules/run-dispatch/adapters/workspace-busy-wait.ts`:
- `parkWorkspaceBusyRetryInTx` runs in the scheduled-retry promotion
transaction, after the existing gate allows the retry. If the recorded
holder is still running and is not stale, or an earlier waiter for the
same workspace is still scheduled, queued, or running, the retry stays
`scheduled_retry`. Only its deadline moves. It does not create a run, an
event, or a wake. The fallback deadline is 5 minutes, and never later
than the holder's one-hour stale point.
- `wakeWorkspaceBusyWaitersInTx` runs in the transaction that ends a
running run (`writeRunStatus`). It makes due the retries that wait for
that run, and the retries that wait for the same workspace as that run.
It registers the scheduled-retry dispatch notification before the write.
- `WORKSPACE_BUSY_HOLDER_STALE_AFTER_MS` moves to the run-dispatch
domain, so the deferral gate and the parked check use one value.
`heartbeat/retries.ts` exports it again.
- A retry without a recorded wait (for example, a retry from before this
change) keeps the old behavior.
- `doc/execution-semantics.md` describes the parked wait.

## Verification

- Red before the fix, green after
(`server/src/__tests__/heartbeat-workspace-busy.test.ts`, "reused shared
execution workspace in a sandbox"):
- "waits on a live holder in one parked run, then runs once when the
holder ends": before, the retry was promoted while the holder was live.
After, it stays parked through due checks at +1 s, +10 min, and +30 min.
Ending the holder makes it due at once. It runs exactly once, and there
is only one `workspace_busy` cancellation.
- "hands the workspace to three waiting siblings in arrival order, one
writer at a time": before, nothing woke the waiters when the holder
ended. After, exactly one waiter is admitted per handoff, in arrival
order. Each runs once, and there are 3 cancellations in total (one first
deferral for each sibling).
- "still lets the user stop a parked waiter": before, the waiter was
promoted while the holder was live. After, Stop cancels the parked
retry, and nothing brings it back.
- Safety case (green before and after): "lets a stale holder reach the
existing quiet-holder failure instead of parking forever".
- `npx vitest run src/__tests__/heartbeat-workspace-busy.test.ts`: 35
passed.
- `heartbeat-remote-workspace-busy`, `heartbeat-retry-scheduling`,
`src/modules/run-dispatch`, `heartbeat/retries.test.ts`,
`execution-projection.test.ts`: 266 of 267 passed. The one failure,
"records pre-provider quota rejection…", is a timing flake on a loaded
machine and passes when it runs alone. It does not use this path.
- `tsc --noEmit` reports no errors in the changed files.
- Staging evidence was read only. This change is not deployed.

## Risks

- One extra indexed `SELECT … FOR UPDATE` on `scheduled_retry` rows when
a running run ends. The update and the notification happen only when
waiters exist.
- If an earlier waiter stays queued for a long time (for example, its
agent is paused), later waiters for the same workspace wait behind it.
Each check is a deadline update, not a run. The fallback check runs
every 5 minutes.
- A remote writer that has ended but has not finished its save (#19075)
is not parked, because its run is no longer `running`. Such a wait can
still make a small number of deferrals until the save settles.
- Low migration risk: no schema change. Old retries without the new
context key keep the old behavior.

## Model Used

- Claude Opus 5.5 (`claude-opus-5-5`), Anthropic, with tool use (shell,
file edits, browser read of staging run records) in Claude Code.

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have searched GitHub for duplicate or related PRs and linked
them above
- [x] I have either (a) linked existing issues with `Fixes: #` / `Closes
#` / `Refs #` OR (b) described the issue in-PR following the relevant
issue template
- [x] I have not referenced internal/instance-local Paperclip issues or
links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip`
URLs)
- [x] My branch name describes the change (e.g. `docs/...`, `fix/...`)
and contains no internal Paperclip ticket id or instance-derived details
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [ ] All Paperclip CI gates are green
- [ ] Greptile is 5/5 with no open P2s, recommendations, or follow-ups
- [x] I will address all Greptile and reviewer comments before
requesting merge

🤖 Generated with [Claude Code](https://claude.com/claude-code)

---------

Co-authored-by: Claude Opus 5.5 <noreply@anthropic.com>
2026-11-04 22:01:37 -06:00
DottaandPaperclip c8013d06ad fix(workspaces): preserve task-only warnings during offline migration (#19144)
## Thinking Path

> - Paperclip is the open source app people use to manage AI agents for
work.
> - Ephemeral web servers must save existing workspaces before volume
removal.
> - Offline migration checks file ownership and recovery authority.
> - The same gate also rejects task assignment and configuration
warnings.
> - Those warnings do not require the old filesystem.
> - This pull request preserves known task-only warnings while it saves
files.
> - File recovery and execution obligations keep their existing
blockers.

## Linked Issues or Issue Description

Refs #18943, #19038, #19138.

**What happened?**

Offline workspace migration refuses tasks with assignment,
configuration, disposition or deliberate-wait warnings. It returns
`workspace_recovery_unresolved` even when the warning has no file or
execution recovery authority.

**Expected behavior**

Save local workspace bytes while retaining the task warning unchanged.
Continue to block unknown recovery kinds, file sources, export failures
and execution recovery work.

**Steps to reproduce**

1. Retain a local workspace on a task with an active assignment or
configuration warning.
2. Stop all app writers through the offline maintenance entry.
3. Attempt workspace migration.

## What Changed

- Admit four known task-only warning kinds during offline file
migration.
- Keep file recovery markers, system recovery, native failure markers,
export-failure causes and unknown kinds blocked unless their exact
legacy source is already preserved.
- Keep the existing live-migration recovery exclusion.
- Recheck warning evidence before publication. Do not resolve warnings
or change their owners.
- Add restoration, rejection and publication-race tests. Update the
migration plan.

## Verification

- 112 focused migration and concurrency tests pass with real PostgreSQL
and filesystem archives.
- The four task-only restoration cases fail against the previous
importer with `workspace_recovery_unresolved`.
- Tests delete the old home, restore its saved bytes and compare each
warning row unchanged.
- File and execution markers, unknown kinds and export failures remain
blocked.
- A task warning that gains file recovery during upload prevents
publication.
- Local server typecheck has no changed-file diagnostics. Stale linked
dependency declarations prevent a clean local whole-server result. Clean
full CI remains required before merge.
- The PR was rebased onto the merged Git preservation fix after
resolving a plan-document conflict. The rebased head passed full PR CI
(41943153422). Current head ba18efc7b5 adds the reviewed deliberate-wait
case and reuses the canonical export-cause set; fresh full CI is
required. The earlier unmergeable head did not have a PR workflow run.
- Serving enrollment and full copied-data acceptance remain separate
gates.

## Risks

- The allowlist must remain narrow. New warning kinds are blocked by
default.
- A known task-only warning with file or execution recovery evidence
still blocks migration.
- This change depends on the existing offline provider fence. It does
not establish that old app writers stopped.

## Model Used

OpenAI GPT-6.1 Codex, exact model ID `gpt-6.1-sol`. Used for reasoning,
code editing, shell tools and test execution. The runtime does not
expose its context-window size.

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have searched GitHub for duplicate or related PRs and linked
them above
- [x] I have either (a) linked existing issues with `Fixes: #` / `Closes
#` / `Refs #` OR (b) described the issue in-PR following the relevant
issue template
- [x] I have not referenced internal/instance-local Paperclip issues or
links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip`
URLs)
- [x] My branch name describes the change (e.g. `docs/...`, `fix/...`)
and contains no internal Paperclip ticket id or instance-derived details
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [ ] All Paperclip CI gates are green
- [ ] Greptile is 5/5 with no open P2s, recommendations, or follow-ups
- [x] I will address all Greptile and reviewer comments before
requesting merge

---------

Co-authored-by: Paperclip <noreply@paperclip.ing>
2026-11-04 22:00:41 -06:00
19c710fe93 fix(issues): record an interrupt comment as the user's Stop (#19149)
## Thinking Path

> - Paperclip is the open source app people use to manage AI agents for
work
> - A board user can interrupt a running agent with a comment
(`interrupt: true`) to redirect the work
> - An interrupt is a Stop plus a message, but it did not record the
user's stop identity the way the Stop control does
> - The release path therefore treated an interrupted native run as a
failed run: it blocked the task and took the finalization lease from the
runner that was still settling
> - Workspace preservation then stopped the sandbox under that live
runner, so the runner reconnected for about 6 minutes and the stop could
not be verified afterward
> - The redirect message stayed saved, but it waited on workspace repair
that could not finish
> - This pull request records the board user's stop identity on
interrupts, the same as the Stop control and terminalization stops
> - The benefit is that an interrupt now settles like a Stop and the
redirect can continue

## Linked Issues or Issue Description

Refs #19122 (the Stop-then-redirect fix for the dispatch gate; this PR
covers the interrupt-comment path).

**What happened?**
A board user posted a comment with `interrupt: true` on a task with a
running native run (Daytona sandbox). The run was cancelled with
`operator_interrupted` and the native cancel was acknowledged. Within a
second, the task went to `blocked` and a
`native_continuation_requires_reconciliation` hold was created. The
runner transport then logged `state=reconnecting` for about 6 minutes,
and the run ended with `runner_process_termination_unconfirmed: ...
Daytona sandbox lease ... is no longer active`. Workspace recovery
started about 10–17 minutes later and failed with
`agent_stop_unconfirmed` / `provider_unavailable`. The redirect comment
stayed saved as a deferred wake waiting on `workspace_repair_required`.
No follow-up run started.

**Expected behavior**
An interrupt behaves like Stop followed by a message. The stopped runner
settles normally. The task is not blocked as a failure. The saved
message continues once the previous execution has stopped.

**Steps to reproduce**
1. Start a native run on a remote sandbox.
2. Post a board comment with `interrupt: true`.
3. Observe the task become `blocked` with a
`native-continuation:<runId>` hold, and the run's finalization row
rewritten to `terminal_failure` with no lease owner while the executor
is still settling.
4. Observe workspace preservation stop the sandbox, the runner transport
reconnect until its grace ends, and recovery fail to confirm the stop.

**Root cause**
`recordNativeTerminalRecoveryIfNeeded`
(`server/src/modules/wake-queue/adapters/postgres.ts`) skips intentional
stops through `isAcknowledgedNativeStop`. That check requires
`resultJson.cancelledByActorType === "user"` and `cancelledByUserId`.
The Stop control and terminalization stops record these fields.
`operatorInterruptCancelOptions` (`server/src/routes/issues.ts`)
recorded only `interruptedByActorType` / `interruptedByActorId`. So an
acknowledged interrupt took the failure branch. That branch blocks the
task and sets `nativeRunFinalizations` to `terminal_failure` with
`leaseOwner: null`. Cancelled-workspace preservation then saw a terminal
row with no owner and stopped the sandbox while the runner was still
settling.

**Paperclip version or commit**
Seen on staging at 69dea878c0. The touched
code is unchanged on current `master`.

**Agent adapter(s) involved**
Not adapter-specific (core bug). Seen with the Paperclip runner adapter
on a Daytona sandbox.

## What Changed

- `operatorInterruptCancelOptions` now records `cancelledByActorType:
"user"` and `cancelledByUserId` for a board user, in addition to the
existing interrupt fields. All three interrupt call sites (comment POST,
issue PATCH, queued-comment interrupt) use it.
- Route regression in `issue-update-comment-wakeup-routes.test.ts`: an
`interrupt: true` comment on a running native run sends these fields,
and the route's actual fields satisfy `isAcknowledgedNativeStop` with an
acknowledged native stop receipt.
- Release-path regression in `wake-queue/adapters/postgres.test.ts`: an
acknowledged interrupt Stop, while the executor still owns finalization,
releases the task without blocking it, creates no recovery hold, keeps
the finalization lease owner, and keeps the saved redirect deferred.

## Verification

- Red before the fix:
- The route test failed because `cancelRun` received no
`cancelledByActorType` / `cancelledByUserId`.
- The release-path test failed with the old interrupt fields: the task
was blocked, a hold was created, and the finalization owner was cleared.
- Green after the fix:
- `cd server && npx vitest run
src/__tests__/issue-update-comment-wakeup-routes.test.ts
src/modules/wake-queue`
- Related suites: `acknowledged-native-stop`,
`issue-queued-comments-routes`, `issue-comment-reopen-routes`,
`issue-execution-policy-routes`, `explicit-native-continuation`,
`heartbeat-process-recovery`.
- The staging incident was read through the read-only run, event, log,
recovery-action and wake diagnostics APIs.
- Not done: a live staging reproduction at the fixed revision.
Deployment is out of scope.

## Risks

- An interrupt now counts as the user's Stop everywhere the Stop control
does. This includes case-handoff supersession in `cancelRun`: an
interrupt supersedes a pending case handoff, like Stop.
- Only board users get the stop identity. Agent actors cannot use
`interrupt: true` (the route returns 403).
- Runs interrupted before this change keep their old fields. They are
not migrated.
- Not changed here, and suitable for follow-ups:
- `recordNativeTerminalRecoveryIfNeeded` can still clear a live
finalization `leaseOwner` for other failed native runs.
- The runner PRP ingress reconnect loop
(`server/src/realtime/runner-prp-outbound.ts`) does not stop early when
the sandbox lease is closed.

## Model Used

- Claude Opus 5.5 (`claude-opus-5-5`), Anthropic, in Claude Code with
tool use (shell, file edits, subagent code tracing, browser for
read-only staging diagnostics).

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have searched GitHub for duplicate or related PRs and linked
them above
- [x] I have either (a) linked existing issues with `Fixes: #` / `Closes
#` / `Refs #` OR (b) described the issue in-PR following the relevant
issue template
- [x] I have not referenced internal/instance-local Paperclip issues or
links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip`
URLs)
- [x] My branch name describes the change (e.g. `docs/...`, `fix/...`)
and contains no internal Paperclip ticket id or instance-derived details
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [ ] All Paperclip CI gates are green
- [ ] Greptile is 5/5 with no open P2s, recommendations, or follow-ups
- [ ] I will address all Greptile and reviewer comments before
requesting merge

🤖 Generated with [Claude Code](https://claude.com/claude-code)

---------

Co-authored-by: Paperclip <noreply@paperclip.ing>
Co-authored-by: Claude Opus 5.5 <noreply@anthropic.com>
2026-11-04 21:58:51 -06:00
DottaandClaude Opus 5.5 eab672e10a fix(workspaces): name the failing remote copy-back step without private output (#19152)
## Thinking Path

> - Paperclip is the open source app people use to manage AI agents for
work.
> - A native run in a Daytona sandbox saves its workspace after the
provider turn. The save is called copy-back.
> - Copy-back fails on staging after successful provider turns. Issues
become blocked with `retry_exhausted`.
> - The recorded cause is only `remote_workspace_operation_failed` or
`workspace_sync_out_failed`. Operators cannot see which step failed or
why.
> - The remote command wrapper drops every unrecognized sandbox failure
to the bare code. The finalizer retry keeps only the disk-full cause.
> - This pull request records a bounded, redacted cause: the operation,
its exit code or signal, and the failing capture stage with structured
error fields.
> - The benefit is that the next copy-back failure shows its first
cause, and sandbox output still cannot leak paths or credentials.

## Linked Issues or Issue Description

**What happened?**
Native runs on a Daytona sandbox finish their provider turn and accept
their result. Then workspace copy-back fails. The first
`workspace_finalize` operation records only
`remote_workspace_operation_failed`. Each retry records only
`workspace_sync_out_failed`. The run has no error text. After the
retries stop, the issue is blocked.

**Steps to reproduce**
1. Run a native task in a Daytona sandbox.
2. Make the sandbox capture step fail with an error that is not
disk-full or a known archive validation error. For example, make Git
exit with 128.
3. Read the run's workspace operations.

**Expected behavior**
The failed operation names the step that failed and a redacted cause.

**Actual behavior**
The failed operation shows only `remote_workspace_operation_failed` and
then `workspace_sync_out_failed`.

Refs #19050, #19059, #19061, #19063. These are related Daytona and
finalizer repairs. This PR does not duplicate them.

## What Changed

- `remote-workspace-snapshot-archive.ts`: add
`remoteWorkspaceFailureDetail`. It is self-contained and runs in the
sandbox. It reports only fixed keys (`code`, `exit`, `signal`,
`syscall`, `killed`, `program=git`, `name`, `reason`). Each value is at
most 64 `[A-Za-z0-9_]` characters and comes from structured error
properties. It never reports message text, command lines, or paths. The
archive child now writes `remote_workspace_archive_failed: <detail>` for
an unclassified capture error.
- `remote-workspace-transport.ts`: the helper-install and capture
scripts write `remote_workspace_capture_failed:
stage=helper|archive|publish <detail>`. The server accepts this text
only when it matches a strict grammar. Unrecognized failures now throw
`RemoteWorkspaceOperationError` with the message
`remote_workspace_operation_failed: operation=<op> exit=<n>[
signal=<SIG>][; <validated cause>]`. Existing exact diagnostics (Git
operation in progress, full disk, archive validation) do not change.
- `native-workspace-finalizer.ts`: a retried remote save records the
redacted cause in the operation stderr and in
`metadata.workspaceSync.cause`. Other error text still stays off the
record.
- Tests: new red/green cases. The old privacy tests now assert the
anchored redacted form, which still excludes any synthetic private text.

## Verification

- Red, before the fix (only the error class existed). 8 tests failed on
behavior:
- The real Git failure produced `Received:
"remote_workspace_operation_failed"`.
  - The signal-terminated command produced the same bare message.
  - The forged-cause cases produced the same bare message.
  - The finalizer retry case lost the cause.
- Green, after the fix:
`npx vitest run src/services/remote-workspace-transport.test.ts
src/services/native-runtime/native-workspace-finalizer-failure.test.ts
src/services/remote-workspace-snapshot-archive.test.ts` reported 126
passed.
- The new capture test runs the real helper scripts with a controlled
`git` that exits 128 and prints a synthetic private path. The error is
exactly `remote_workspace_operation_failed: operation=capture exit=1;
remote_workspace_capture_failed: stage=archive exit=128 program=git
helper_exit=1`. The private path is absent. The workspace files are
unchanged. The test passes with split output and with one-shot output.
- Forged causes are dropped. These cases are tested: a path in a value,
an extra line, an unknown key, and a prefixed text.
- Wider sweep: I ran all 63 server test files that touch remote
workspaces, copy-back, or finalization. 6381 tests passed. 2 tests
failed in `chat-channels.integration.test.ts` and
`git-workspace-expiration.test.ts`. These 2 tests also fail with this
PR's three source files reverted to `master`. This PR does not cause
them.
- Typecheck: `tsc` reports no errors in the changed files. Other errors
are local, from unbuilt workspace packages.
- Not done: I did not run a live Daytona copy-back. This change adds
diagnostics. It does not repair the underlying failure. The staging
failures can be diagnosed after this PR is deployed.

## Risks

- The error message for an unrecognized remote failure changes from the
exact bare code to the same code plus validated fields. No production
code compares the exact text. Only tests did, and I updated them.
- Privacy: the sandbox detail contains only structured error properties.
The server re-validates them with an anchored grammar with a length
limit and a field limit. A path, a message text, or an unknown key fails
the grammar, and the server drops the whole cause.
- Retry and classification policy do not change.
`classifyNativeWorkspaceFailure` does not read the new text.
- This PR does not address two items: the final snapshot operation stays
`running` after retries are exhausted, and no disk-retention cause was
proven for the ACPX disk-full report.

## Model Used

- Claude Opus 5.5 (`claude-opus-5-5`), Anthropic, used through Claude
Code with tool use (shell, browser read-only GETs on staging, code
execution).

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have searched GitHub for duplicate or related PRs and linked
them above
- [x] I have either (a) linked existing issues with `Fixes: #` / `Closes
#` / `Refs #` OR (b) described the issue in-PR following the relevant
issue template
- [x] I have not referenced internal/instance-local Paperclip issues or
links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip`
URLs)
- [x] My branch name describes the change (e.g. `docs/...`, `fix/...`)
and contains no internal Paperclip ticket id or instance-derived details
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [ ] All Paperclip CI gates are green
- [ ] Greptile is 5/5 with no open P2s, recommendations, or follow-ups
- [x] I will address all Greptile and reviewer comments before
requesting merge

🤖 Generated with [Claude Code](https://claude.com/claude-code)

Co-authored-by: Claude Opus 5.5 <noreply@anthropic.com>
2026-11-04 21:47:29 -06:00
DottaandPaperclip 7c66b6b1f6 test(onboarding): cover plan, hiring, and execution approval history (#19069)
## Thinking Path

> - Paperclip manages agent work and human decisions.
> - Onboarding can approve a plan, a hire, and an execution step in
separate turns.
> - Tests covered single approvals more closely than that full history.
> - The repaired gate must retain valid plan approval through later
decisions.
> - Every consumer must recognize the saved confirmation kind and
selected scope.
> - This change tests that contract and registers a complete
interview-to-execution journey.

## Linked Issues or Issue Description

Refs #19043, #17914, #18283.

The earlier tests admitted one accepted proposal at a time.
Decomposition fixtures used standard confirmations. The direct-task E2E
path forbids hiring. Those cases did not cover an accepted checkbox plan
followed by hiring and a separate untargeted execution approval.

## What Changed

- Add eight PostgreSQL contract cases for standard and checkbox plan
approvals. Native tools create the cards. An authenticated human accepts
them through HTTP. A later native run reads the approved revision and
actual selected scope.
- Exercise native task creation, generic REST creation, child REST
creation, and accepted-plan decomposition. Check the assigned child and
one creation audit event. Check durable replay on the three entry points
that support it. A pending execution confirmation still prevents
creation.
- Register the explicit-only `onboarding-approval-history` suite for
local native Codex and ACPX Claude. The browser chooses the interview,
selects only drafting in the saved plan, approves one writer hire, and
approves a separate Start drafting confirmation. The model must hire the
writer and use that writer's own child execution to save the welcome
document.
- Grade each human decision, the unchanged plan revision and selection,
approval timing, one assigned child and worker execution, the exact
writer-authored saved revision, no pending requests, and persistence
after reload. Calibrate the oracle against missing, forged, premature,
duplicate, and changed outcomes.
- Preserve synthetic option choices, document/run bindings, and saved
revision authorship in the existing public first-task evidence
projection. Keep private provider/account data excluded. Document the
workflow, evidence, billing, and cleanup bounds.
- Align the approval-history fixture with its completion oracle: the
onboarding parent must be Done. Test both native profiles against graded
completion evidence and reject a completed child whose parent remains In
review. Count parent heartbeats separately from the writer: accept one
to seven parent records while retaining the twelve-company-run cap and
the independent three-approval/one-writer oracle.
- Retain the existing 52-cell first-task suite. The new suite has one
attempt, seven expected work turns, a twelve-run maximum, a
fifteen-minute deadline, and the existing $5 company task budget. It is
excluded from `--all`.
- Update two stale cleanup assertions to include the existing
thirty-second deletion timeout.

## Verification

- Red control: temporarily restore the pre-fix admission module and run
the new checkbox/native history case. It fails with the expected
`First-task proposal requires human acceptance` error after plan,
hiring, and execution acceptance. Restore the repaired module after the
probe.
- The final post-rebase history matrix and existing onboarding safety
suite passed together: 74 tests, no skips.
- Final focused Runner E2E support passed: 413 Vitest tests and all 370
Node support checks. This covers catalog discovery, journey controls,
wrong-outcome calibration, public evidence, and existing first-task
behavior.
- Review controls: four authorship cases fail before the revision check.
A delayed browser-response control fails before the approval-time fix.
Both pass after repair. The final oracle requires the exact current
document revision, writer ID, native child run ID, matching body, and
readback after reload.
- Credential-free discovery lists both new native cells. No provider
call was made. `OPENAI_API_KEY` and `ANTHROPIC_API_KEY` are absent, so
the real provider journey remains unqualified.
- The earlier broad credential-free E2E support run reported 6,728
passing cases, three skipped cases, and nine failures in three unrelated
files. All nine reproduce with the changed E2E source restored to the
unchanged baseline: three expired overhead-fixture cases, one stale Pi
profile-version assertion, and five workflow security assertions. This
change does not alter those files, paid workflow policy, or provider
pins.
- Previous full workspace typecheck/build and [Linux
CI](https://github.com/paperclipai/paperclip/actions/runs/41921754638)
passed on `4f431f5aae99d072cc75027e90d7b847b4c342ca`, including the new
eight-case PostgreSQL file. Ponytail subsequently found a fixture/oracle
terminal-status mismatch. Both native-cell controls fail on that fixture
(`done` observed versus `in_review` expected), while the
parent-in-review negative control passes. A second comparison uses the
actual `matchesRunCount` predicate: graded evidence with six parent runs
and one writer run fails the old exact-seven-parent requirement. Both
fixes pass these controls, all 413 focused support tests, all 370 Node
checks, and the owning E2E project typecheck. [Fresh
CI](https://github.com/paperclipai/paperclip/actions/runs/41936699686)
passed on `91c980b110252da451b92eda597c168517de1276`: 48 successful jobs
and one expected skip. Greptile reviewed this head at 5/5 with no
unresolved findings. Ponytail's terminal-status finding is fixed and its
thread is resolved; its current-head re-review remains queued. Live
provider cells remain unqualified.

## Risks

The production API and approval gate are unchanged. The new paid journey
can expose model or product failures at an intermediate approval
boundary. It retains those failures and uses the existing diagnostics
and cleanup. Registration and deterministic tests do not establish a
live provider pass. The unrelated baseline support failures remain
explicit.

## Model Used

OpenAI GPT-6 through Codex, with reasoning, repository tools, and code
execution. The exact serving model ID and context-window size are not
exposed in this session.

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have searched GitHub for duplicate or related PRs and linked
them above
- [x] I have either (a) linked existing issues with `Fixes: #` / `Closes
#` / `Refs #` OR (b) described the issue in-PR following the relevant
issue template
- [x] I have not referenced internal/instance-local Paperclip issues or
links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip`
URLs)
- [x] My branch name describes the change (e.g. `docs/...`, `fix/...`)
and contains no internal Paperclip ticket id or instance-derived details
- [x] I have run tests locally and they pass (focused tests; unrelated
baseline failures are recorded above)
- [x] I have added or updated tests where applicable
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [x] All Paperclip CI gates are green
- [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups
- [x] I will address all Greptile and reviewer comments before
requesting merge

---------

Co-authored-by: Paperclip <noreply@paperclip.ing>
2026-11-04 21:46:55 -06:00
DottaandPaperclip 5b99bdae47 fix(native): verify requested publication at finalization (#19130)
## Thinking Path

> - Paperclip manages work done by AI agents.
> - Native execution reports work completion through a saved result.
> - Some native providers can build that result from their final
message.
> - This path can bypass the finish tool's publication check.
> - A task can then be marked done without the document the user
requested.
> - This change checks publication again at finalization and status
commit.
> - Missing output uses the existing bounded repair path with specific
feedback.

## Linked Issues or Issue Description

**What happened?**

A native provider returned a final message about a local Markdown
briefing. It had not published a task document or a verified attachment.
Its synthetic result claimed success. The server accepted the claim and
marked the task done. A real PostgreSQL regression reproduced this on
public master.

**Expected behavior**

A requested task document must have valid saved publication evidence
before the task becomes done. The check must apply even when the
provider does not call the finish tool. A plain answer still needs no
document. An explicit document-free fallback requires the actual human
rejection for the current unchanged request.

**Steps to reproduce**

1. Request a Markdown briefing document on a task.
2. Complete a native turn with a synthetic
`provider:opencode:agent-message` result and no published output.
3. Admit the result through the normal control-plane port and finalize
it.
4. The old code marks the task done. The repaired code keeps it open and
queues one repair with publication instructions.

**Paperclip version or commit**

Reproduced from public master
`7d1e9b3477f12780e987c32fb8191d476c210fda`.

Related: #18661 added the finish-tool publication guard. This change
applies that guard to finalization. #18180 covers a different fallback
problem: no final text. This change preserves native provider fallback
generation and its saved claims.

## What Changed

- Run the existing deliverable guard before accepting a native done
decision. Keep the original provider result unchanged.
- Route missing publication through the existing single
incomplete-result continuation. Include the publication feedback in the
wake. A repeated incomplete result uses the existing named recovery
action.
- Inspect publication through a typed safe projection of the accepted
ledger. Keep whole-protocol validation at result admission. An
authoritative done decision must pass publication checks even when its
accepted ledger is partial.
- Recheck publication under the status-commit transaction. Hold only
matching proof rows with non-waiting share locks. Changed or locked
proof uses the existing bounded status replanning path.
- Permit an explicit document-free decline fallback only for the saved
human rejection selected by the current continuation. Require the same
original request, current saved description, source revision and source
contract. Model prose or an unrelated old decision is insufficient.
- Add real database controls for publication, plain answers,
authenticated decline, stale or wrong decisions, bounded recovery, and
deletion between assessment and commit.

## Verification

- The first regression failed before the repair: the synthetic result
marked an unpublished task done. The retained real PostgreSQL run took
21.846 seconds, including setup and cleanup.
- Two description-edit regressions also failed before their repair: a
description change after admission or at the commit boundary still let
the old decline waive the newly required document. Both now keep the
task open. The red run took 25.738 seconds.
- The commit-race regression also failed before its repair: removing
publication after assessment still allowed done. That run took 17.448
seconds.
- All thirteen focused real database controls pass after the repair.
They exercise the normal control-plane port, finalizer, semantic
publication tools, saved human rejection and status transaction. Owned
database processes, data and output storage are removed after each run.
- All 469 tests across the seven relevant and affected suites pass on
head `f8870469f9879a53551f0faaff0fe5b1234ea303`, based on master
`c7390bef20`. The six-suite run passed 426 tests in 97.319 seconds
including owned setup and cleanup. The unchanged reassessment-worker
suite passed 43 tests in 48.901 seconds. All required current-head
checks pass in [CI run
41937653209](https://github.com/paperclipai/paperclip/actions/runs/41937653209),
including aggregate verify, typechecking, build, general and serialized
tests, native Runner tests and all eight browser shards. Fresh Greptile
review is 5/5 on this exact head, with no open findings.
- Local scoped server typechecking reported no errors in the four
changed files and 11 errors in reused dependency declarations and
exports. That setup failure remains retained. Fresh current-head CI
passes the full Typecheck + Release Registry gate and Build. Local
typecheck is not claimed as passing.
- CI on the previous head found one shared status-projection regression
across Studio, routine, status-authority and worker controls. Those
phases use opaque accepted ledgers. The correction inspects only
publication references, preserves the accepted marker and bindings, and
forces the publication check for an authoritative done decision. A new
real commit control verifies that an empty accepted ledger cannot close
a requested-document task. All original affected assertions remain
unchanged. The retained failed run is
[41934314437](https://github.com/paperclipai/paperclip/actions/runs/41934314437).
- No provider call, paid campaign, staging deployment or eval regrade is
part of this PR. No model, timeout, assertion, workflow, dependency or
lockfile change.

Focused suites:

```sh
./node_modules/.bin/vitest run --config "$PWD/server/vitest.config.ts" --root server \
  src/services/native-runtime/paperclip-control-plane-port.test.ts \
  src/services/native-runtime/native-completion-feedback.test.ts \
  src/services/native-runtime/native-deliverable-feedback.test.ts \
  src/services/native-runtime/native-skill-test-status.test.ts \
  src/services/native-runtime/native-routine-status.test.ts \
  src/__tests__/native-status-arbiter-corpus.test.ts \
  src/__tests__/native-status-reassessment-work.test.ts
```

## Risks

A native result that previously closed a task without its requested
output now leaves it open. The existing repair path can run once and
then records a named recovery action. Database contention does not grant
completion. The existing first-task decision gate still runs first. The
conditional decline check is deliberately conservative; unmatched
wording or missing authoritative source data does not waive publication.
This change closes a false completion path. It does not establish why a
provider omitted publication, prove a live provider repair, or qualify a
full evaluation plan.

## Model Used

OpenAI Codex, based on GPT-6, assisted with diagnosis, code and
controls. The exact serving model identifier and context-window size are
not exposed in this session. Capabilities used: repository inspection,
code editing, local code execution and GitHub tools.

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have searched GitHub for duplicate or related PRs and linked
them above
- [x] I have described the issue in-PR following the relevant issue
template
- [x] I have not referenced internal/instance-local Paperclip issues or
links
- [x] My branch name describes the change and contains no internal issue
identity
- [x] I have run relevant tests locally and they pass
- [x] I have added or updated tests where applicable
- [x] I have documented the behavior and limits in this PR; no operator
command or public API changed
- [x] I have considered and documented any risks above
- [x] All Paperclip CI gates are green
- [x] Greptile is 5/5 with no open findings
- [x] I will address all Greptile and reviewer comments before
requesting merge

---------

Co-authored-by: Paperclip <noreply@paperclip.ing>
2026-11-04 21:46:29 -06:00
Devin FoleyandClaude Opus 5.5 b9fbbf8d30 fix(native): continue runs woken by withdrawn or cancelled interactions (#19163)
Withdrawing a card or cancelling a question wakes the assignee with that
interaction id. The native interaction bridge required every wake
interaction to be accepted, rejected or answered, so preparation failed
with native_interaction_unresolved before the provider started.

Project a cancelled interaction as a closed response with its stored
result. Consumers grant authority only for accepted, answered or pending
items, so the closed response carries context and no approval. Pending
requests and governed tool reviews keep their existing checks.

Co-Authored-By: Claude Opus 5.5 <noreply@anthropic.com>
canary/v2026.1105.0-canary.4
2026-11-04 19:10:59 -08:00
Devin FoleyandPaperclip 5fdfd3f17a fix(recovery): bound repeated saved-record response bodies (#19168)
## Thinking Path

> - Paperclip manages agent tasks and their saved execution history.
> - A continuation carries completed API receipts to prevent duplicate
work.
> - Repeated saves can copy large record bodies into each new provider
prompt.
> - The resulting command can exceed the durable PRP frame limit before
useful work starts.
> - This change projects large successful saved-record responses as
compact references.
> - The original receipts and authenticated user direction remain
available.

## Linked Issues or Issue Description

**What happened?**

A task with many saved document and comment responses can fail with
`command_payload_too_large`. Same-run recovery can then show a runner
identity failure that hides this first cause. Completed response bodies
repeat content already stored in task records.

**Expected behavior**

Continue from saved records with completed-action evidence that fits the
runner command. Keep user messages, answers and approvals intact. Keep
the full original receipts.

**Steps to reproduce**

1. Save 39 successful document, comment and task-write responses in a
run's API receipt ledger.
2. Give each response a large record body.
3. Build and render a continuation, then queue it through the real
durable PRP journal.
4. Before this fix, the regression throws `command_payload_too_large`
with a 4.2 MB prompt.

Related work: #16980 pages oversized assigned tool results. This change
addresses earlier response bodies repeated in a later continuation. It
does not change tool-result paging or protocol limits.

## What Changed

- Project response data over 4 KiB for three known successful
record-write operations. Keep record, revision and status metadata, HTTP
outcome, receipt identity and a data digest.
- Keep small, failed, unknown, mismatched and foreign-company results in
their existing form.
- Explain the reference format in shared prompt guidance and the
execution contract.
- Add database and real-journal regression coverage. Verify the original
receipt ledger remains unchanged.

The continuation service owns the projection. The shared adapter helper
only explains the reference to native and legacy prompt consumers. There
are no new dependencies, provider calls, timers or background scans.

## Verification

- The unfixed database regression fails at the real PRP command limit
with `command_payload_too_large`.
- Continuation builder, native execution input and native continuation
suites: 118 tests pass.
- Shared prompt consumers: 142 tests pass.
- Module boundaries and diff whitespace checks pass.
- Greptile: 5/5 on `8109e7361c5b5e38f9aad35af9bf4ad7bdc5f338`, with no
unresolved review threads. All CI checks pass.
- Full workspace `pnpm -r typecheck` and `pnpm build`: passed.
- Hosted verification: pending deployment. The source fix does not
itself resume the affected hosted task.

Local setup failures remain accounted for: the fresh checkout lacked an
ignored root SDK link and embedded PostgreSQL library symlinks after an
offline install that skipped lifecycle scripts. The maintained
workspace-link helper, SDK build and platform hydration script repaired
those prerequisites. A later test expectation assumed JSON insertion
order across PostgreSQL JSONB; it now checks the digest against the
unchanged stored receipt. These failures did not change runtime limits
or recovery guards.

## Risks

Large responses from these three successful operations now use explicit
saved-record references in continuation context. Agents must read the
record or source receipt when full content is needed. This is not a
universal prompt-size limit: user history, unknown operations and other
inputs retain their existing representation. No migration, permission,
credential, provider-stop or replay policy changes.

## Model Used

OpenAI GPT-6.1 Sol (`gpt-6.1-sol`), xhigh reasoning, through Codex in T3
Code. Used for investigation, implementation and local verification. No
subagents.

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have searched GitHub for duplicate or related PRs and linked
them above
- [x] I have either linked existing issues or described the issue in-PR
following the issue template
- [x] I have not referenced internal/instance-local Paperclip issues or
links
- [x] My branch name describes the change and contains no internal task
id
- [x] I have run the targeted tests locally and they pass
- [x] I have added tests and updated relevant documentation
- [x] I have considered and documented risks
- [x] All Paperclip CI gates are green
- [x] Greptile is 5/5 with no open findings
- [x] I will address review comments before requesting merge

Co-authored-by: Paperclip <noreply@paperclip.ing>
2026-11-04 19:01:08 -08:00
Devin FoleyandClaude Opus 5.5 7f9ef38273 fix(runner): report the upstream cause of OpenCode provider failures (#19166)
OpenCode reports some OpenRouter failures as an UnknownError whose message is the provider's JSON error body. The provider failure now reads its HTTP status, error type and message from that body, so the run shows the upstream message instead of raw JSON.

The OpenCode nativeTurnFailure diagnostic now carries the provider failure's category, retryability and HTTP status (closed values only; no provider text or code), and recognizes the driver's opencode_empty_response code. Run status, error codes and retries do not change.

Co-Authored-By: Claude Opus 5.5 <noreply@anthropic.com>
2026-11-04 18:57:26 -08:00
Nicky Leach 737db73275 fix(native): measure resumed run usage from the prior run's total (#19161) 2026-11-04 18:55:14 -08:00
Devin FoleyandClaude Opus 5.5 6452e964a3 fix(runner): ignore replayed history for restored terminal turns (#19035)
## Thinking Path

> - Paperclip is the open source app people use to manage AI agents for
work
> - Paperclip Runner executes native provider sessions (Codex app-server
and ACPX) and can resume a run from an exact persisted checkpoint on a
replacement sandbox.
> - When a turn completes without a semantic result, the server
schedules one same-run disposition recovery from that checkpoint.
> - On the replacement sandbox, the restored runner can deliver the
committed history of the checkpointed turn again as live notifications,
before the disposition turn starts.
> - Between turns there is no active turn. The identity classifier only
marks settled-turn notifications as `stale_turn` while a different turn
is active, so the replayed `turn/started` reaches the live-turn guard
and fails the session with `turn_binding_mismatch` ("Provider started an
unexpected turn."). Recovery then stops with
`native_event_replay_conflict`.
> - This pull request makes the driver drop replayed history for turns
that were already terminal in the restored checkpoint.
> - The benefit is that exact-checkpoint disposition recovery can
continue instead of failing closed on its own history.

## Linked Issues or Issue Description

**What happened?**
A hosted ACPX run (Claude model) completed its first turn without a
semantic result. The server persisted an exact-checkpoint disposition
recovery. The second attempt restored the harness state from the
verified failover backup on a new sandbox. About 3.7 seconds after the
runner transport was ready, and before any `turn.submitted` event, the
driver failed with `turn_binding_mismatch: Provider started an
unexpected turn.` The run then stopped with
`native_event_replay_conflict` and required workspace repair.

**Expected behavior**
Notifications that only replay a turn that the checkpoint already
recorded as terminal must not fail the resumed session. The disposition
turn must start normally.

**Steps to reproduce**
1. Open a session, start turn `turn-1`, and complete it without a
semantic result.
2. Take the snapshot and recover the session on a new transport.
3. Deliver `turn/started`, `item/*` and `turn/completed` notifications
for `turn-1` again, before or during the disposition `turn/start`.
4. Before this change, the session fails with `turn_binding_mismatch`.
If the replay arrives while `turn/start` is pending, the driver binds
`turn-1` as the new turn and fails with "Codex turn identity changed
during start".

**Paperclip version or commit**
Observed on a staging release built from `c2163b3ecf08`. Reproduced on
`master` at `89703c3`.

## What Changed

- `CodexSessionState` records the turn IDs that were terminal in the
restored checkpoint (`restoredTerminalTurns`). It also adds
`isRestoredTerminalReplay(turnId)`. This is true only when the turn was
restored as terminal, is not the active turn, and the session has not
failed.
- `codex-session-notifications.ts` drops `turn/started`, `item/started`,
`item/completed` and item or turn delta notifications for such turns. It
emits no turn or item events for them. It emits a bounded
`provider_notification_identity` diagnostic with `classification:
"restored_terminal_replay"`, and shares the existing limit of 32
diagnostics.
- A replayed `turn/completed` is unchanged. It still goes through
`mapTerminalTurn`, which compares the terminal fingerprint and fails on
a conflict.
- New regression file `codex-app-server-driver.terminal-replay.test.ts`.
It replays history before and during the disposition submission. It also
checks that a live session still fails closed on `turn/started` for a
turn that ended in that same session.

## Verification

- Red before the fix, on `master` with only the test file added:
- `npx vitest run
src/drivers/codex/codex-app-server-driver.terminal-replay.test.ts` gives
2 failed and 1 passed. The "before" case fails with
`NativeProviderTerminalFailure: Provider started an unexpected turn.`
(`providerCode: turn_binding_mismatch`). This is the production error.
The "during" case fails with `Codex turn identity changed during start`.
- Green after the fix: the same command gives 3 passed.
- Related suites: `npx vitest run src/drivers/codex
src/drivers/acpx/codex-acpx-driver.test.ts
src/conformance/harness-driver.test.ts
src/backends/harness-driver-backend.test.ts
src/live/live-session.test.ts` gives 567 passed and 1 failed. The
failure is `codex-boundaries.test.ts > defers provider-owned workspace
existence without weakening its assignment`. It also fails on unchanged
`master` in my sandbox, because the sandbox workspace path triggers the
sensitive-path check. It is not related to this change.
- `tsc -p tsconfig.json --noEmit` shows no errors in the changed files.
The only errors come from the unbuilt
`@paperclipai/paperclip-eval-kernel` package in
`src/eval/workflow-harness.ts`, because I did not run the eval build
prep step locally.

## Risks

- The change relaxes the guard only for turn IDs restored as terminal
from the checkpoint. Notifications for those IDs are now ignored and do
not fail the session. A provider cannot use a settled turn ID for new
work, so these notifications cannot be new provider activity.
- Live post-terminal notifications, pre-turn notifications, foreign turn
IDs, `paperclip/runResult`, and tool calls keep their current
fail-closed behavior. The new test covers the live post-terminal case.
- Limitation: this change makes the driver tolerant of the replay. It
does not change why the runnerd transport cursor replays the committed
window on exact-authority recovery. The transport-level reason was not
reproduced here. The new diagnostic makes the event visible in run logs,
so later evidence can confirm or reject that path.

## Model Used

- Claude Opus 5.5 (`claude-opus-5-5`), Anthropic, used as an agent with
tool use, shell and test execution, and repository search.

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have searched GitHub for duplicate or related PRs and linked
them above
- [x] I have either (a) linked existing issues with `Fixes: #` / `Closes
#` / `Refs #` OR (b) described the issue in-PR following the relevant
issue template
- [x] I have not referenced internal/instance-local Paperclip issues or
links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip`
URLs)
- [x] My branch name describes the change (e.g. `docs/...`, `fix/...`)
and contains no internal Paperclip ticket id or instance-derived details
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [ ] All Paperclip CI gates are green
- [ ] Greptile is 5/5 with no open P2s, recommendations, or follow-ups
- [x] I will address all Greptile and reviewer comments before
requesting merge

🤖 Generated with [Claude Code](https://claude.com/claude-code)

---------

Co-authored-by: Claude Opus 5.5 <noreply@anthropic.com>
2026-11-04 18:43:37 -08:00
TonioandClaude Fable 5.1 c3c2a680ee fix(ui): lift a picture front on hover like the sheets in Artifacts V1 (#17263)
## Thinking Path

> - Paperclip is the open source app people use to manage AI agents for
work
> - The Artifacts page, the panel's Artifacts tab and the task thread
show the artifacts that agents produce. Behind the experimental setting
Artifacts V1 (#17228) they use the presentation that the artifact
directions lab settled.
> - On the Artifacts page, a hovered tile turns the two backing pages of
a stack and lifts the front artwork by 6px. The lift targets the
`data-artifact-front` hook. Sheets carry the hook. A picture or
poster-less video front is a bare print and does not carry it.
> - So on a picture stack, or a single picture tile, the backings turn
but the artwork stands still. Tonio saw this on staging today.
> - This pull request puts the print inside the same lifted wrapper as
the sheets.
> - The benefit is that every front moves the same way on hover, as the
lab and the mocks do.

## Linked Issues or Issue Description

Refs #17228 (the Artifacts V1 pull request that introduced the hover
rules and the print front).

**What happened?**

With Artifacts V1 on, hover a task stack on the Artifacts page whose
newest artifact is a picture. The two backing pages turn by 5°, but the
picture does not rise. A single picture tile does not rise either. Sheet
fronts (documents, text, files) rise 6px as designed.

**Expected behavior**

Every front rises 6px while its tile is hovered, as the lab's MVP V1 kit
and the PCLP-Core mocks show, and as `index.css` already specifies for
`data-artifact-front`.

**Steps to reproduce**

1. Settings → Experimental → turn on Artifacts V1.
2. Open the Artifacts page with a task whose newest artifact is a
picture.
3. Hover the task's stack. The backings fan out; the picture stays where
it is.

**Paperclip version or commit**

master at 12bb7e197 (staging, tonio-robotics workspace) and at 989ee668e
locally. Verified on staging through the hovered tile: the stack had no
`[data-artifact-front]` element and the print's computed transform was
`none`.

**Deployment mode**

Cloud-managed staging tenant, and the local worktree instance. The
behaviour is browser-side and does not depend on the deployment.

## What Changed

- `ArtifactFront` renders the `media` treatment inside the same
`data-artifact-front` wrapper as the three sheet treatments. The
caller's placement style moves to the wrapper, and `ArtifactPrint` keeps
its own size. No change to `ArtifactPrint`, `ArtifactStack` or the hover
rules.
- `ArtifactTile.test.tsx`: the picture stack test now asserts the print
sits inside the lifted wrapper and that the wrapper, not the print,
carries the stack's absolute placement. A new test covers a single
picture tile.

## Verification

- `cd ui && npx vitest run src/components/artifacts/v1
src/pages/Artifacts` → 7 files, 42 tests pass.
- `pnpm check:token-gates` → all gates clean.
- `cd ui && pnpm typecheck` → the Storybook catalog check passes; `tsc
-b` reports only the five pre-existing `PluginOrganizationSwitcher.tsx`
TS7006 errors that master has without this change.
- Storybook, story `components-artifact-v1-primitives--stacks`, hovered
the ACM-5 picture stack: the front's computed transform is `matrix(1, 0,
0, 1, 0, -6)` and the two backings read ±5° from their resting angles,
with the 300ms transition. Before the change the same tile had no
`[data-artifact-front]` and the print's transform was `none`.
- Reduced motion is unchanged: the rules stay under
`prefers-reduced-motion: no-preference`.

## Risks

Low risk. The change adds one wrapper `div` around the print on the
Artifacts page tiles only, behind the Artifacts V1 setting, which is off
by default. The wrapper is `shrink-0` with no size of its own, so it
takes the print's size, and the placement style that the stack passed to
the print now lands on the wrapper. The thread and panel rows do not use
`ArtifactFront` and are untouched.

> For core feature work, check [`ROADMAP.md`](ROADMAP.md) first and
discuss it in `#dev` before opening the PR. Feature PRs that overlap
with planned core work may need to be redirected — check the roadmap
first. See `CONTRIBUTING.md`.

## Model Used

- Claude Fable 5.1 (Anthropic), model ID `claude-fable-5-1`, extended
thinking, running in Claude Code with tool use (file edits, shell,
in-app browser for the staging and Storybook checks).

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have searched GitHub for duplicate or related PRs and linked
them above
- [x] I have either (a) linked existing issues with `Fixes: #` / `Closes
#` / `Refs #` OR (b) described the issue in-PR following the relevant
issue template
- [x] I have not referenced internal/instance-local Paperclip issues or
links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip`
URLs)
- [x] My branch name describes the change (e.g. `docs/...`, `fix/...`)
and contains no internal Paperclip ticket id or instance-derived details
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [ ] All Paperclip CI gates are green
- [ ] Greptile is 5/5 with no open P2s, recommendations, or follow-ups
- [x] I will address all Greptile and reviewer comments before
requesting merge

🤖 Generated with [Claude Code](https://claude.com/claude-code)

---------

Co-authored-by: Claude Fable 5.1 <noreply@anthropic.com>
canary/v2026.1105.0-canary.3
2026-11-04 18:17:47 -08:00
Devin FoleyandClaude Opus 5.5 3c7af35103 fix(errors): return tool gateway rejections with their own status (#19158)
## Thinking Path

> - Paperclip is the open source app people use to manage AI agents for
work.
> - Agents call connected tools through the tool gateway. Some tool
calls need a human review before they run.
> - A user approves a tool review from a task card. The approve route
calls the gateway.
> - The gateway can reject the approval with `ToolGatewayHttpError(409,
"approved_tool_target_changed")`. This is an expected rejection: the
tool or connection changed after the review.
> - `ToolGatewayHttpError` does not extend `HttpError`. The shared error
handler only keeps the status of an `HttpError`. Thus the route answers
500 "Internal server error" and sends the rejection to Sentry as a
crash.
> - The user does not see the reason. The user clicks Approve again, and
each click makes one more crash report. One user made 69 reports on
staging this way.
> - This pull request makes the shared error handler keep the status and
reason code of client (4xx) gateway errors.
> - The benefit is a clear 409 with a reason for the user, and no false
crash reports.

## Linked Issues or Issue Description

Refs #12775 (related community PR. It changes `ToolGatewayHttpError` to
extend `HttpError`, which affects every `instanceof HttpError` check.
This PR is smaller and keeps gateway server failures on the crash path.)

**What happened?**
A user approves a tool review on a task card. The tool definition or
connection changed after the review. The API answers 500 "Internal
server error". Sentry records the expected rejection "Tool definition or
connection changed; request a new review" as a server crash. Each retry
records one more event.

**Expected behavior**
The API answers 409 with `code: "approved_tool_target_changed"` and the
message "Tool definition or connection changed; request a new review".
Sentry does not record a crash.

**Steps to reproduce**
1. Make a connected tool that needs approval, and start a tool call so
that a review card appears.
2. Change the tool connection (for example, its config) before you
approve.
3. Click Approve on the task card (`POST
/api/issues/:id/interactions/:interactionId/accept`).
4. See 500 "Internal server error" and a new Sentry event from
`approveActionRequest`.

**Paperclip version or commit**
`master` at `482ec0aea9ab6f2684baaa1487f2c7a2eedf009e`.

## What Changed

- `server/src/middleware/error-handler.ts`: the handler converts a
`ToolGatewayHttpError` with a 4xx status to an `HttpError`. The new
error keeps the status, the message, the gateway details, and the reason
code as `code`. The original stack stays.
- Gateway errors with a 5xx status do not change. They still go on the
crash path, answer 500 "Internal server error", and go to Sentry. Thus
provider text in those messages stays hidden.
- `server/src/__tests__/error-handler-tool-gateway.test.ts`: new tests
for the 409 mapping, for the unchanged 5xx path, and for an Express
route that lets the gateway error escape.

## Verification

- `cd server && npx vitest run
src/__tests__/error-handler-tool-gateway.test.ts
src/__tests__/error-handler.test.ts` passes: 21 tests.
- Without the fix, the new tests fail with `expected 500 to be 409`.
With the fix, they pass.
- `src/__tests__/issue-thread-interaction-routes.test.ts` and
`src/__tests__/json-parse-error-handler.test.ts` also pass: 175 tests in
4 suites with the two error handler suites.
- I checked the runtime import graph of `services/tool-gateway.ts` (685
modules). It does not import `middleware/error-handler.ts`, so the new
import makes no cycle.
- I did not run the full server typecheck locally, because it ran out of
memory in an 8 GB sandbox. CI must do this check.

## Risks

- Low risk. Only gateway errors with a 4xx status change. Before, they
became 500. Now they keep their own status.
- Some routes outside the gateway router can now return gateway 4xx
details in the `details` field. The gateway routes already return the
same details through `sendGatewayError`.
- `middleware/error-handler.ts` now imports `services/tool-gateway.ts`.
Unit tests that import the error handler load more modules. The app
already loads this module.
- This PR does not fix the cause of some of these rejections. A routine
OAuth token refresh changes values in the signed approval snapshot
(token secret versions, the order of grant secret refs, and token expiry
times). This can make a pending review fail. That fix changes
`services/tool-gateway.ts` and comes in a separate PR.

## Model Used

- Claude Opus 5.5 (`claude-opus-5-5`), Anthropic, used as a coding agent
with tool use (shell, file edits, test runs, and GitHub API).

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have searched GitHub for duplicate or related PRs and linked
them above
- [x] I have either (a) linked existing issues with `Fixes: #` / `Closes
#` / `Refs #` OR (b) described the issue in-PR following the relevant
issue template
- [x] I have not referenced internal/instance-local Paperclip issues or
links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip`
URLs)
- [x] My branch name describes the change (e.g. `docs/...`, `fix/...`)
and contains no internal Paperclip ticket id or instance-derived details
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [x] I have updated relevant documentation to reflect my changes (no
documentation change is necessary)
- [x] I have considered and documented any risks above
- [ ] All Paperclip CI gates are green
- [ ] Greptile is 5/5 with no open P2s, recommendations, or follow-ups
- [x] I will address all Greptile and reviewer comments before
requesting merge

🤖 Generated with [Claude Code](https://claude.com/claude-code)

Co-authored-by: Claude Opus 5.5 <noreply@anthropic.com>
2026-11-04 18:14:52 -08:00
Devin FoleyandPaperclip 94fccc3180 fix(workspaces): preserve snapshots beside runtime sockets (#19159)
## Thinking Path

> - A workspace can contain saved source files alongside transient
runtime IPC endpoints.
> - The portable archive supports files, directories and confined
symlinks; treating a Unix socket as a fatal entry prevents every file
beside it from being saved.
> - Keep the existing archive owner and validation. Record socket paths
as exclusions, leaving the source endpoint and adjacent work intact.

## Linked Issues or Issue Description

**What happened?**

Retained workspace recovery repeatedly fails with
`remote_workspace_archive_unsupported_entry` when the source tree
contains a Unix socket, preventing adjacent source files from being
saved. A real socket reproduces the error in local capture and the
serialized sandbox helper.

**Expected behavior**

Save regular workspace files, record runtime socket paths as exclusions,
and leave the source endpoints and new file edits intact.

**Steps to reproduce**

1. Create a temporary workspace with an uncommitted text file.
2. Open a Unix domain socket in that directory with a Node server.
3. Capture the workspace through the local archive function or generated
sandbox helper. Before this fix both captures fail; afterward the saved
file restores and the socket exclusion is recorded.

**Paperclip version or commit**

Reproduced on `6fa54d55779295d90c455389cebdd3da96607d20` before this
change. The socket fixture establishes this failure class; it does not
establish the entry type behind every historical unsupported-entry
occurrence.

## What Changed

- Exclude Unix domain socket endpoints from portable workspace captures
and include their paths in the existing exclusion manifest.
- Keep source sockets in place. Preserve normal files and the existing
rejection of named pipes, device entries and unsafe links.
- Exercise local and serialized capture, an unchanged source endpoint,
restoration of adjacent uncommitted work, FIFO rejection, and a socket
becoming a real file during capture. A changed source still fails safely
and retains that new file.
- Document the portable snapshot behavior.

## Verification

- Red regression: both local and serialized captures failed with
`remote_workspace_archive_unsupported_entry` before the change.
- `pnpm exec vitest run
server/src/services/remote-workspace-snapshot-archive.test.ts`: **43
passed** using real filesystem sockets, pipes, Git repositories and
archives.
- `pnpm -r typecheck` and `pnpm build`: passed.
- Module boundaries and `git diff --check`: passed. Added source and PR
text were scanned for credentials, private incident identifiers and
personal data before push.
- Snapshot storage and save-concurrency consumer suites pass **23
tests**. Their first local runs exposed missing workspace SDK build
links and unhydrated macOS embedded-Postgres library symlinks in the new
checkout. Repairing those prerequisites made the unchanged consumer
suites pass; the earlier failures remain recorded and no assertion was
weakened.
- Greptile reviewed `e313565a5088abce448f11b29982462aa338a692` at
**5/5** with no unresolved threads. All current-head CI checks are green
and the branch is conflict-free. Hosted recovery needs a qualified
deployment and original-task verification.

## Risks

Socket endpoints represent runtime IPC and are not recreated by archive
restore. Their paths are visible in the existing exclusion manifest.
This adds no archive entry type, subprocess, recurring work, provider
call or dependency. It does not alter source authorization, stop
receipts, ordinary file validation, restore safety or recovery budgets.
Unix socket/FIFO fixtures are skipped on Windows; existing portable
archive coverage still runs there.

## Model Used

OpenAI GPT-6.1 Sol (`gpt-6.1-sol`) through Codex, xhigh reasoning. Used
repository tools, code execution and real local filesystem/process
fixtures.

## Checklist

- [x] I have searched GitHub for duplicate or related PRs and linked
them above
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] Added focused behavioral and preservation regression coverage
- [x] Updated the execution contract and documented limits
- [x] Typecheck and build pass locally
- [x] Scanned the diff and description before push
- [x] Current-head CI is fully green
- [x] Greptile is 5/5 with no unresolved comments

Co-authored-by: Paperclip <noreply@paperclip.ing>
2026-11-04 18:06:59 -08:00
Devin FoleyandClaude Opus 5.5 7edbc1fc07 fix(server): keep a successor's issue lock when a finalizing native run releases its checkout (#19156)
`release_checkout` now clears `checkoutRunId` and the execution lock only when they belong to the committing run, so a successor that claimed the issue while its predecessor was finalizing keeps its claim and passes reviewed-chat attestation.

`attestReviewedExternalChatRun` reports the first failed check as a closed label. Setup failures store it in `resultJson.reviewedChatBinding.denialReason`, and Sentry run-failure diagnostics export it as `execution.reviewedChatBindingDenialReason` (no IDs or text). The error message is unchanged.

Co-Authored-By: Claude Opus 5.5 <noreply@anthropic.com>
canary/v2026.1105.0-canary.2
2026-11-04 17:49:03 -08:00
Devin FoleyandClaude Opus 5.5 6fa54d5577 fix(codex-local): route typed ACP credential rejections to sign-in recovery (#19146)
Classify a typed Codex ACP `access` failure as `acpx_auth_required` when the provider text reports `401 Unauthorized`, `invalid_api_key`, or an incorrect/invalid API key. Other `access` failures keep `acpx_turn_failed`.

Co-Authored-By: Claude Opus 5.5 <noreply@anthropic.com>
2026-11-04 17:27:48 -08:00
DottaandClaude Opus 5.5 482ec0aea9 fix(native): run saved copy-back retries on schedule behind a slow export (#19145)
## Thinking Path

> - Paperclip is the open source app people use to manage AI agents for
work
> - Native runs copy their sandbox workspace back after the provider
finishes. A failed copy-back saves a retry 30 seconds later, with a
bound of 3 attempts.
> - One shared delivery queue runs these retries. A pass of that queue
ends only when its slowest check ends.
> - A legitimate sandbox export can take 10+ minutes. While it runs, all
other due retries wait.
> - On staging, a run active across a deploy showed "Reconnecting" with
an overdue retry for about 24 minutes. Its retries ran at +24 min and
+3.5 min instead of +30 s. It settled only after about 32 minutes.
> - This pull request lets idle check slots admit entries that come due
during a pass. It does not overlap a running check's resource and does
not start work after abort or drain.
> - The benefit is that the existing 3-attempt bound settles a failing
copy-back in about 1 minute, not after the slowest unrelated export.

## Linked Issues or Issue Description

**What happened?**
A native run whose result is durable but whose workspace copy-back
failed stays in `running` with the label "Reconnecting" for a long time.
Its saved retry time is in the past. The retry does not run until an
unrelated slow copy-back in the same queue pass finishes.

**Steps to reproduce**
1. Start two native runs on different tasks with accepted results.
2. Let the copy-back of run A take many minutes.
3. Let the copy-back of run B fail. It saves a retry 30 seconds later.
4. Watch run B. Its retry does not run until run A's copy-back ends.

**Expected behavior**
Run B retries on its saved schedule. After 3 failed attempts it settles
with `native_workspace_sync_out_retry_exhausted` and a recovery action,
while run A continues.

**Paperclip version or commit**
master at a0c0851766. Observed on a staging deployment of 69dea878.

**Agent adapter(s) involved**
Not adapter-specific (core bug). Observed with the Paperclip runner.

**Relevant logs or output**
In-run copy-back failed at 23:44:57 (retry saved for 23:45:28). The
deploy restarted the server at 23:49:45. One queue check exported
another task's workspace from 23:53:54 to 00:06:15. The overdue retry
ran at 00:09:06, then 00:12:39, and the run settled at 00:12:40 with
`native_workspace_sync_out_retry_exhausted`. About 20 other runs
followed the same timeline. Their failures at 00:12–00:13 are this same
retry exhaustion. They do not come from a reattach sweep.

## What Changed

- `registerScopedDeadlineWork` has a new opt-in
`concurrentChecks.admitDueWhileActive` option. While a pass still has a
running check, idle slots admit entries that are due (saved deadline,
failure backoff, and minimum spacing). They wait for the next deadline
or the next check completion.
- Admission skips entries owned by the pass and entries whose resource
keys a running check holds. It stops on abort or when `canRun()` is
false. The pass still ends only when all running checks end.
- The native workspace finalization queue opts in. Its `check` already
rereads the durable coordinator row before it acts.
- Regression tests: a real-database test in
`native-workspace-finalization-work.test.ts`, plus two helper tests
(resource-key safety and shutdown).

## Verification

- `cd server && npx vitest run
src/__tests__/native-workspace-finalization-work.test.ts
src/__tests__/scoped-deadline-work.test.ts
src/__tests__/delivery-work-coordinator.test.ts` passes (68 tests).
- Red before the fix: "keeps another task's saved retries on schedule
and settles it while a slow copy-back is running" failed because
`onWorkspaceSettled` was never called for the failing run. "admits saved
deadlines that come due behind a slow check without overlapping its
resource" failed too.
- Green after the fix: the failing run makes exactly 3 attempts, settles
as `terminal_failure` / `native_workspace_sync_out_retry_exhausted`, and
the slow copy-back is admitted once and then succeeds.
- `tsc --noEmit` shows no errors in the changed files.
- Not done: a live staging check. This change is not deployed.

## Risks

- Low to medium. Only the workspace finalization queue opts in. Other
queues keep the current behavior.
- An admitted entry is not reconstructed first. The finalization `check`
rereads durable state, so a stale in-memory entry cannot start a second
export. The advisory lock and owner receipt still prevent two copy-backs
for one run.
- This change does not fix the cause of the copy-back failures on
staging (`native_session_lease_lost` in-run, then
`workspace_sync_out_failed` with no detail). That needs a separate
change.

## Model Used

- Claude Opus 5.5 (`claude-opus-5-5`), Anthropic, with tool use and code
execution in Claude Code.

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have searched GitHub for duplicate or related PRs and linked
them above
- [x] I have either (a) linked existing issues with `Fixes: #` / `Closes
#` / `Refs #` OR (b) described the issue in-PR following the relevant
issue template
- [x] I have not referenced internal/instance-local Paperclip issues or
links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip`
URLs)
- [x] My branch name describes the change (e.g. `docs/...`, `fix/...`)
and contains no internal Paperclip ticket id or instance-derived details
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [x] All Paperclip CI gates are green
- [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups
- [x] I will address all Greptile and reviewer comments before
requesting merge

🤖 Generated with [Claude Code](https://claude.com/claude-code)

---------

Co-authored-by: Claude Opus 5.5 <noreply@anthropic.com>
2026-11-04 19:26:02 -06:00
c2cc69d1e4 fix(recovery): resume and settle preserved native results (#19034)
## Thinking Path

> - Paperclip is the open source app people use to manage AI agents for
work.
> - Native execution can save an accepted result before workspace export
fails.
> - Recover must preserve the files and settle that same result without
another agent turn.
> - The export failure can own the task's Blocked transition and its
recovery notice.
> - Recovery must prove preservation, stop, source identity and current
authority before settlement.
> - Recover can also transfer repair ownership to the system, which must
keep explicit board export repair available.
> - This change restores those paths while preserving later task state,
live owners and unknown action outcomes.

## Linked Issues or Issue Description

Related #17916 protects unfinished exports. Related #19004 preserves
deliberate Retry authority. This change repairs accepted-result
finalization and its recovery notice.

**What happened?**

A native run accepted its result, then exhausted workspace export.
Normal Recover could save the files but leave the result and old
recovery notice unsettled. A saved Retry could also use a different
generation from preservation. Separately, Recover changed the action
owner from board to system. Explicit export Retry then rejected that
same source as stale, even when its accepted result and stopped
allocation still matched.

**Expected behavior**

Preserve files, finish the original accepted result and close only its
obsolete notice after exact proof. Keep explicit board export repair
available after system adoption. Preserve current authority, Stop, later
task changes, newer execution and every physical ownership fence.

**Steps to reproduce**

1. Accept a native result and exhaust its workspace export.
2. Request ordinary Recover, optionally with an existing saved Retry.
3. Let file preservation complete. Inspect the task and source recovery
notice.
4. To reproduce the explicit-repair defect, call export Retry after
Recover adopts the action. Before this repair it rejects the valid
system-owned source before any provider call.

## What Changed

- Record the exact accepted result, contract, task status version and
prior decision when export exhaustion creates Blocked.
- Bind passive finalization to complete, source-bound preservation and
the current chat/review authority. Recheck the proof under status commit
locks.
- Keep the saved Retry identity separate from its preservation
generation. Retain coalescing and reject malformed or mismatched
history.
- Preserve an existing published GitHub assessment for the
no-publication status-unproven wait. Keep all semantic, result,
authority and publication checks.
- Close an old export notice only after its own accepted result, export
or preservation receipts, effects, projection and old Runner ownership
settle. Keep newer work and files unchanged.
- Permit explicit board export Retry after Recover transfers the exact
source to the system. Require valid system and workspace recovery
records for that same run, plus every existing result, stop, allocation,
task and shared physical-lock check. Reject missing proof, another
source and agent ownership before provider access.
- Merge current master while retaining the stronger Stop, source and
verified preservation checks.
- Update the execution contract. No schema, endpoint, Runner protocol,
model, trust or provider artifact change.

## Verification

- Current head: `9be5a73489801095c9f39c9bfcb285a22b055912`.
- The explicit-repair regression fails before the new guard change:
ordinary Recover adopts the real database action, then export Retry
rejects it as stale. It passes after the repair.
- On the merged source, three owning PostgreSQL/file suites pass **220
tests**: `preserved-native-response-wait.integration.test.ts`,
`native-workspace-export-retry.test.ts` and
`idle-completed-history.test.ts`. The export suite includes four
unrelated-owner/source rejection controls and both board-owned and
system-adopted active-exporter controls. Results and run counts prove
that repair creates no provider turn.
- Server layered typecheck, module boundaries, `git diff --check`, and
the added-line secret/private-incident scan pass.
- Full workspace typecheck (`pnpm -r typecheck`) and build (`pnpm
build`) pass. The complete local `pnpm test:run` is still running; its
completed serialized chat partitions pass. Current-head CI is green (53
successful checks, 3 expected skips). Greptile reviewed
`9be5a73489801095c9f39c9bfcb285a22b055912` at 2026-11-05 00:58 UTC with
confidence **5/5**; all review threads are resolved.
- Original qualification remains supporting evidence: the
accepted-result fixture exercises HTTP Recover, real files, the
finalizer, saved Retry coalescing, eight commit races, current
principal/resource/head changes, Stop, later task changes, notice
closure and repeated delivery. No accepted response, provider turn or
publication is replayed.
- Earlier failures remain recorded. Original red controls exposed
wrong-action preservation, unrelated finalization barriers, generation
mismatch and a lost GitHub assessment; the original repair added
controls for them. The prior CI run
[41908572248](https://github.com/paperclipai/paperclip/actions/runs/41908572248)
failed an unchanged completed-history runtime fixture because its
loopback service refused connections through the original ten-second
readiness window. That owning suite passes unchanged in the 220-case run
above. The earlier readiness failure's cause remains unproven; no wait
or assertion was weakened.
- Local and CI tests do not establish hosted task recovery. The serving
revision and original-task outcomes require separate verification after
rollout.

## Risks

- Historical failures without the exact export-owned Blocked receipt
keep their current task status. A saved result does not grant execution
or publication authority.
- Explicit export repair still resumes only the same retained allocation
under the shared physical lock. It cannot take over an active exporter,
create another agent turn, choose a replacement sandbox or discard saved
files.
- Retiring a source notice does not release physical resources or modify
a newer task owner, later Done state or saved snapshot history.
- The proof adds bounded reads only for concrete recovery obligations.
It adds no recurring worker or polling timer.

## Model Used

OpenAI GPT-6 through Codex for the original repair. OpenAI GPT-6.1 Sol
(`gpt-6.1-sol`), xhigh reasoning, for the merge, integration
verification and system-adopted export repair. Both used repository
tools, code execution and PostgreSQL tests. The runtime does not expose
a context-window size.

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used
- [x] I have checked ROADMAP.md and searched for duplicate or related
work
- [x] I have described the issue and linked related public PRs
- [x] I have included no internal task identifiers or private incident
links
- [x] I have added behavioral and safety regression tests
- [x] I have documented verification limits and risks
- [x] I have updated the execution contract
- [x] All Paperclip CI gates are green on the current head
- [x] Greptile is 5/5 on the current head with no unresolved comments
- [x] I will address review comments before requesting merge

---------

Co-authored-by: Paperclip <noreply@paperclip.ing>
Co-authored-by: Devin Foley <devin@paperclip.ing>
2026-11-04 17:16:17 -08:00
DottaandPaperclip 9e5039f6c8 fix(daytona): retain duplex close ownership after lease cleanup (#19150)
## Thinking Path

> - Paperclip is the open source app people use to manage AI agents for
work.
> - Remote agents use provider plugins to manage sandbox leases and
duplex channels.
> - The host verifies the exact route and session when a bound channel
closes.
> - Daytona lease teardown removed that binding before a later host
close.
> - The incomplete reply made the host retire the shared worker. A later
command then failed during setup.
> - This pull request retains bounded close receipts and joins the
original cleanup.
> - Later work can use the same worker while invalid or unconfirmed
closes still fail closed.

## Linked Issues or Issue Description

**What happened?**

A normal lease teardown can close a duplex channel before the host
closes its bound route. Daytona then replies with only the route ID. The
host requires the original session ID too. It logs `duplex channel close
not acknowledged; retiring worker`, stops the worker, and rejects a
later `environmentExecute` call as stopped.

**Expected behavior**

A later close must identify the original route and session and join its
existing cleanup. It must not revive the channel or restart the worker.
Unknown ownership and an unconfirmed close must retain the existing
failure behavior.

**Steps to reproduce**

1. Acquire two leases through one Daytona provider worker.
2. Open a duplex channel on the first lease.
3. Release that lease, then close the bound channel through the host.
4. Execute a command on the second lease.

**Paperclip version or commit**

The real host/worker regression fails on
`69dea878c0b920b335594debb0286443ba9f6c35`. This branch includes master
`3a72efebe5b050e7594bb309e71a0d5f3072db00`.

**Deployment mode**

Managed Daytona sandbox execution in Cloud. The regression uses a local
real host and SDK worker. Only the external Daytona SDK and PTY are
simulated.

Related work: Refs #19004, Refs #10429, Refs #18065, Refs #19050. These
cover task Retry, managed worker startup, drain release, and stale
provider sessions.

## What Changed

- Retain at most 4096 retired route/session bindings with their original
close promises.
- Remove live channel authority before cleanup starts. Concurrent and
later closes join the same promise and return the stored binding.
- Reject reuse of a retained route ID. Keep unknown and evicted routes
unable to provide a session acknowledgement.
- Add a real child-process host/SDK-worker/Daytona regression with only
the external Daytona SDK and PTY simulated.
- Cover release, cancellation, stop, destroy, resume, a stalled close,
concurrent closes, failed cleanup, forged IDs and bounded eviction.
- Document close receipt scope and its separate provider-termination
checks.

## Verification

- RED before the repair: the actual host and SDK worker reproduced the
retirement log, SIGKILL, stopped state, and later `environmentExecute`
rejection. The direct provider cases also failed because the session ID
was missing.
- Combined-branch provider suite: 364 passed.
- Combined-branch host manager, duplex, managed readiness and composed
suites: 142 passed. The final test-only manifest-loading change passed
all 6 composed cases again.
- Full repository typecheck (`node scripts/typecheck-low-memory.mjs`),
focused server types and the standalone Daytona build passed. The
provider build uses pinned SDK `0.203.0` and TypeScript `5.9.3`.
- The composed cases check the same worker/PID, one later command,
preserved saved content, revoked channel writes/stops, and continued
rejection of commands on closed leases. A stalled close still retires
the worker and dispatches no later command.
- Reproduce with `pnpm --dir server exec vitest run --config
vitest.config.ts
src/__tests__/plugin-worker-manager-daytona-close.test.ts` from a
checkout with the SDK build dependencies prepared. Run the provider
suite with its own Vitest config.
- An initial local typecheck lacked the excluded providers' SDK links
after an install with scripts disabled. The standard root postinstall
linker restored those local links, and full typechecking then passed.
The fixture loads its actual built manifest. Failed setup output is
retained; no type configuration was relaxed.
- The first two composed attempts stopped during fixture setup. They are
not the behavioral RED above. Their failed outputs are retained.
- The first broad local typecheck stopped at an IPC permission error
during preflight. It passed after rerunning with allowed local IPC and
the standard SDK links.
- [Full repository
CI](https://github.com/paperclipai/paperclip/actions/runs/41945022881)
passed all 48 jobs on this head. Selection fell back to the complete
task plan, so the run was unfiltered. The complete check inventory has
54 successes and two expected Storybook skips; the separate Snyk status
passed. Fresh Greptile review on
`daebbeb5005b9d9bd59d32ea30094279048b9213` is [5/5 with no actionable
comments](https://github.com/paperclipai/paperclip/pull/19150#issuecomment-6646621914).
Independent production and fixture review found no actionable findings.
Hosted acceptance of this repair has not run.

## Risks

- A receipt removed at the 4096-entry bound cannot confirm an old bound
close. The existing host guard remains effective in that case.
- Close acknowledgements identify channels. They do not certify remote
process termination or clear unknown external work. Provider termination
receipts and existing recovery gates remain in force.
- Hosted evidence confirms the unacknowledged-close retirement class.
The historical log does not distinguish a missing session ID from a
timeout or another close error. The regression proves and repairs the
missing-binding path; it also preserves timeout retirement.
- The provider is outside the main pnpm workspace. A new Cloud image
must compile its changed source. The unchanged plugin version alone does
not prove activation.

## Model Used

OpenAI Codex, GPT-6 family, with reasoning, source editing and tool
execution. The exact model ID and context window are not exposed in this
session.

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have searched GitHub for duplicate or related PRs and linked
them above
- [x] I have either (a) linked existing issues with `Fixes: #` / `Closes
#` / `Refs #` OR (b) described the issue in-PR following the relevant
issue template
- [x] I have not referenced internal/instance-local Paperclip issues or
links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip`
URLs)
- [x] My branch name describes the change (e.g. `docs/...`, `fix/...`)
and contains no internal Paperclip ticket id or instance-derived details
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [x] All Paperclip CI gates are green
- [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups
- [x] I will address all Greptile and reviewer comments before
requesting merge

---------

Co-authored-by: Paperclip <noreply@paperclip.ing>
2026-11-04 19:15:50 -06:00
DottaandClaude Opus 5.5 11f2a5293d fix(native): name the proof that holds a recovered per-turn owner (#19061)
## Thinking Path

> - Paperclip is the open source app people use to manage AI agents for
work.
> - Native Runner per-turn sessions in a remote sandbox keep one
conversation across task turns.
> - A follow-up must prove that the previous Runner owner is finished
before it starts a new Runner. #18846 added a retirement path for an
owner that finished without a saved Runner checkpoint.
> - On a test deployment, follow-ups still fail with
`runner_state_identity_mismatch:
prior_owner_terminal_state_indeterminate`. The retirement path has about
twenty separate fences, and each refusal gives the same error.
> - The read-only run data cannot tell which fence held these runs. A
code fix without that evidence would be a guess.
> - This pull request names the first failed retirement proof in the
error. Admission behavior does not change.
> - The benefit is that the next failure on a deployment identifies the
exact fence, so the follow-up fix can target it.

## Linked Issues or Issue Description

Refs #18846 (retirement of recovered per-turn owners). Refs #18992
(settlement from live state).

**What happened?**

On a test deployment, 16 runs in one day failed before provider work
with `runner_state_identity_mismatch:
prior_owner_terminal_state_indeterminate`. All were per-turn
`acpx_runtime` runs in a Daytona sandbox, and each got a new sandbox. In
the runs that I inspected, the previous run committed its result. In one
of them, `harness_state.backup.persist` and `session.checkpoint.persist`
ran for about 346 seconds and failed, so the Runner left no suspension
receipt or failover backup. That is the case that #18846 addresses, but
the follow-ups still failed. The run log does not show the retirement
message, and the error is the same for each fence. Thus the cause cannot
be found from the run data.

**Expected behavior**

When admission holds a follow-up, the error names the proof that failed.

**Steps to reproduce**

1. Seed a per-turn sandbox owner that committed its result without a
Runner suspension receipt.
2. Make one retirement proof fail. For example, leave the owner phase
`observed`, or leave a `runner.suspend` command pending.
3. Admit a follow-up in a new sandbox.
4. Before this change, every case fails with the same error text.

**Paperclip version or commit**

Observed on a deployment before `e107a75755`. The same error text is on
`master`.

## What Changed

- `retireFinishedPerTurnRunnerdOwner` returns the refusal reason instead
of `false`. `readSettledRunnerdProjection` returns the journal refusal
reason instead of `null`.
- When admission tries the retirement and it fails, the error is
`prior_owner_terminal_state_indeterminate; retirement_refused=<reason>`.
A warm session gets no suffix, because retirement does not apply to it.
- Reasons use only fixed lists of known names: owner phase, recovery
state, controller fence reason, unsettled command type and status,
sandbox outcome, and quarantine copy result. Any other stored value
appears as `other`. Reasons do not include payloads, file names, or
paths.
- The same proofs apply in the same order. Admission accepts and refuses
the same states as before.
- `doc/execution-semantics.md` describes the suffix.

## Verification

- **Failure before the change:** I ran the updated
`native-recovered-owner-followup.test.ts` against the unchanged
executor. 18 tests failed. Example: expected `...indeterminate;
retirement_refused=owner_observed`, received `...indeterminate`.
- **After the change:** `cd server && pnpm exec vitest run
src/services/native-runtime/native-recovered-owner-followup.test.ts`: 22
passed. Each held case now asserts its reason:
`owner_retryable_failure`, `controller_remote_controller_lease_live`,
`owner_recovery_resuming_session`,
`journal_commands_unsettled(runner.suspend.pending)`,
`journal_tool_input_unanswered`, `quarantine_journal_identity_mismatch`,
`runner_lifecycle_not_suspended`, and
`quarantine_runner_lifecycle_not_suspended`.
- The success cases still retire the owner and admit the follow-up.
- `pnpm exec vitest run
src/services/native-runtime/native-session-executor.test.ts
src/services/native-runtime/native-runner-restart-recovery.integration.test.ts
src/services/native-runtime/remote-warm-session-recovery.test.ts`: 1227
passed, 20 skipped.
- `pnpm exec vitest run
src/services/native-runtime/native-controller-recovery.integration.test.ts
src/__tests__/task-workspace-binding.test.ts`: passed.
- `tsc --noEmit` reports no errors in the changed lines. This worktree
did not build every workspace package, so the full-package typecheck
shows unrelated missing-module errors. CI runs the full typecheck.
- **Not verified live:** no deployment has run this change.

## Risks

- Low risk. Admission logic is unchanged. Only the error text gets a
suffix.
- Consumers that match the error by prefix still match.
`failed-run-retry.ts` uses `startsWith("runner_state_identity_mismatch:
")`. No code compares the full string outside tests.
- This change does not fix the held runs. It finds the fence. A second
change is needed after a deployment reports the reason.

## Model Used

- Claude Opus 5.5 (`claude-opus-5-5`) in Claude Code, with tool use,
shell execution, and read-only browser access to a test deployment. The
harness does not expose the context window size.

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have searched GitHub for duplicate or related PRs and linked
them above
- [x] I have either (a) linked existing issues with `Fixes: #` / `Closes
#` / `Refs #` OR (b) described the issue in-PR following the relevant
issue template
- [x] I have not referenced internal/instance-local Paperclip issues or
links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip`
URLs)
- [x] My branch name describes the change (e.g. `docs/...`, `fix/...`)
and contains no internal Paperclip ticket id or instance-derived details
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [ ] All Paperclip CI gates are green
- [ ] Greptile is 5/5 with no open P2s, recommendations, or follow-ups
- [x] I will address all Greptile and reviewer comments before
requesting merge

🤖 Generated with [Claude Code](https://claude.com/claude-code)

---------

Co-authored-by: Claude Opus 5.5 <noreply@anthropic.com>
canary/v2026.1105.0-canary.1
2026-11-04 18:50:01 -06:00
DottaandClaude Opus 5.5 3a72efebe5 fix(native): confirm no runner process when remote staging fails before launch (#19059)
## Thinking Path

> - Paperclip is the open source app people use to manage AI agents for
work
> - Native sandbox runs supervise a remote `paperclip-runnerd` process.
When that process exits during a turn, the transport restarts it inside
a reconnect grace window.
> - The server launcher stages the runtime assets first. Then it sends
one launch RPC that starts runnerd.
> - When staging failed, the launcher reported the exit as unconfirmed.
This happened although no launch RPC was sent and no process could
exist.
> - Reconnect recovery treats an unconfirmed exit as a possible second
owner. So it stopped at once with
`runner_process_termination_unconfirmed` and did not retry.
> - This pull request confirms the exit for failures before the launch
RPC. Failures after dispatch stay unconfirmed.
> - The benefit is that a transient staging failure, such as a full
sandbox disk, uses the normal bounded retry. A real failure ends with
`transport_reconnect_grace_exceeded` and keeps the staging error as the
detail.

## Linked Issues or Issue Description

**What happened?**
On a hosted staging deployment, 7 native ACPX runs failed in 24 hours
with `Provider notification transport failed closed.`
(`native_provider_terminal_failed`). In every run, the runner process
exited during the turn. The replacement launch then failed while it
uploaded the runtime context into the sandbox:
`runner_process_termination_unconfirmed: replacement runner health could
not be verified: ... .paperclip-upload-<uuid>.tar.gz: create: ... no
space left on device`.
The sandbox disk was full. No replacement process was started. But the
launcher said that it could not confirm the exit. So recovery did not
retry inside its grace window.

**Expected behavior**
A staging failure before the launch RPC proves that no replacement
process exists. Recovery must retry within the configured reconnect
grace. If the failure continues, the run must end with the
reconnect-grace failure and the staging error.

**Steps to reproduce**
1. Create a remote runner launcher whose `ensureArtifact` step throws,
for example with an ENOSPC upload error.
2. Wait for the handle completion to reject.
3. Before this change, `isExitConfirmed()` returns `false`, and no
launch RPC was sent. The transport then fails closed with
`runner_process_termination_unconfirmed`.

**Paperclip version or commit**
Observed on staging revision `89703c3`. Reproduced on `master` at
`be20d4ad97`.

Related: #19035 and #19014 change other runner paths (replayed terminal
turns and redacted external tool results). They do not change remote
launcher exit evidence. #18999 adds a free-space reserve for host-volume
seed copies. It does not change sandbox disk use or this classification.

## What Changed

- `createRemoteRunnerProcessLauncher` records when it dispatches the
launch RPC. If the completion fails before that point, the handle
reports `isExitConfirmed() === true`. The original error is kept
unchanged.
- A failed or timed-out launch RPC still reports an unconfirmed exit,
because the RPC may have started runnerd.
- Added a launcher regression for a staging failure before dispatch.
- Added safety cases for a failed and a timed-out launch RPC.
- Added a transport regression with the real `paperclip-runnerd`. A
replacement whose staging fails is retried, and the next launch restores
the durable session without a notification failure.

## Verification

- Red before the fix: `cd server && npx vitest run
src/services/native-runtime/native-session-executor.test.ts -t "remote
runner process supervision"` failed `confirms no replacement process
exists when staging fails before the launch RPC` with `expected false to
be true`. The two launch-RPC safety cases passed.
- Green after the fix: `npx vitest run
src/services/native-runtime/native-session-executor.test.ts` passes 1131
of 1131 tests.
- `npx vitest run src/services/native-runtime/setup-readiness.test.ts`
passes 98 of 98 tests.
- `cd packages/paperclip-runner && npx vitest run
src/live/runnerd-codex-transport.test.ts` passes 246 of 246 tests with
the real debug `paperclip-runnerd`. This includes the existing case
where a replacement with a dispatched but unverifiable process still
fails closed.
- `npx tsc --noEmit -p server` and `pnpm --filter
@paperclipai/paperclip-runner typecheck` pass.
- Not run: a live hosted sandbox with a full disk. The staging data
showed the exact error, but this change was not deployed there.

## Risks

- Low risk. The change affects only failures that occur before the
launch RPC. In that window, the launcher has not run any sandbox command
that can start runnerd.
- Retries now run for the reconnect grace window, which is bounded and
uses the existing backoff. Each failed staging attempt cleans its own
upload scratch.
- This change does not free sandbox disk space. If the disk stays full,
the run still fails, now with `transport_reconnect_grace_exceeded` and
the ENOSPC detail.

## Model Used

- Claude Opus 5.5 (`claude-opus-5-5`), Anthropic, used through Claude
Code with tool use, shell execution, and code editing.

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have searched GitHub for duplicate or related PRs and linked
them above
- [x] I have either (a) linked existing issues with `Fixes: #` / `Closes
#` / `Refs #` OR (b) described the issue in-PR following the relevant
issue template
- [x] I have not referenced internal/instance-local Paperclip issues or
links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip`
URLs)
- [x] My branch name describes the change (e.g. `docs/...`, `fix/...`)
and contains no internal Paperclip ticket id or instance-derived details
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [x] All Paperclip CI gates are green
- [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups
- [x] I will address all Greptile and reviewer comments before
requesting merge

🤖 Generated with [Claude Code](https://claude.com/claude-code)

---------

Co-authored-by: Claude Opus 5.5 <noreply@anthropic.com>
2026-11-04 18:26:02 -06:00
DottaandClaude Opus 5.5 d8dbe55368 fix(workspaces): let a missing task repository ref be corrected (#19072)
## Thinking Path

> - Paperclip is the open source app people use to manage AI agents for
work
> - Agents can ask Paperclip to prepare a task repository at a specific
ref
> - Paperclip records that request and clones the repository at the next
admission
> - Paperclip did not check that the requested ref exists
> - When the ref was absent, every admission retried the same checkout
and failed setup
> - A corrected request was refused as a conflicting receipt, so the
task stayed blocked with no repair path
> - This pull request identifies a missing ref and lets a corrected
request replace it while nothing was published
> - The benefit is that a bad ref becomes a repairable error instead of
a permanent setup failure

## Linked Issues or Issue Description

**What happened?**
An agent asked for a catalog repository at ref `main`. The repository
default branch is `master` and has no `main` branch. Each later
admission failed with `setup_failed`: `git checkout main` reported
`pathspec 'main' did not match`. The task failed admission for more than
a week and became blocked. A new request with ref `master` returned 409
because the receipt with ref `main` already existed.

**Expected behavior**
Paperclip should report that the requested ref does not exist. A new
request with a valid ref should replace the bad ref when no checkout
exists.

**Steps to reproduce**
1. Use a repository whose only branch is `master`.
2. Request it as a task repository with `ref: "main"`.
3. Admit the task. Preparation fails, and the receipt goes to
`needs_repair`.
4. Request the same repository with `ref: "master"`. Before this change,
the request returns 409.

## What Changed

- `managed-repository-checkout.ts`: When `git checkout <ref>` fails with
Git's unknown-ref message, and each quiet `rev-parse --verify` probe
(`<ref>^{commit}`, `refs/remotes/origin/<ref>^{commit}`) exits 1, throw
`RepositoryRefNotFoundError`. The message tells the caller to request
the repository again with an existing branch, tag, or commit. Other
checkout failures keep their original cause.
- `execution-workspace-repositories.ts`: Record `failureCode:
"repository_ref_not_found"` for that error. Other failures keep
`repository_preparation_failed`.
- `execution-workspace-repositories.ts`: A request for the same
repository with a different ref replaces the ref only when all of these
are true: the receipt is `needs_repair` with `repository_ref_not_found`,
it has no pinned commit, the workspace is local (no remote authority),
and the checkout path is absent. The update is conditional on that state
and writes a `workspace.repository.ref_corrected` activity entry. All
other ref changes keep the existing 409 conflict.
- `execution-workspace-repositories.ts`: Local admission re-reads each
receipt inside the checkout lock and claims it with a conditional update
on its current ref. A correction that commits after the receipts were
listed is used, not discarded.
- Tests: one regression for the full missing-ref path, and one safety
test that keeps the receipt immutable when files exist at the checkout
path or when the failure was not a missing ref.

## Verification

- Red before the fix: `pnpm --filter @paperclipai/server exec vitest run
src/__tests__/task-workspace-repositories-persistence.test.ts` failed
with `expected ... /ref "main" does not exist/ but got 'Failed to
prepare managed checkout fo…'`.
- Green after the fix: the same file passes (11 tests). The new test
admits with ref `main` (fails, `repository_ref_not_found`, no checkout),
corrects to `master`, admits again (ready, pinned to the source commit),
and then confirms that a later ref change after publication still
returns a conflict.
- The regression also holds the checkout lock while admission waits,
corrects the ref, and then releases the lock. Without the in-lock
re-read it fails with 409; with it, admission publishes the corrected
ref.
- `heartbeat-managed-clone-credentials.test.ts` passes: an
authentication failure during checkout keeps its cause and is not
reported as a missing ref.
- Other checkout suites pass (9 files, 317 tests): reopen, base storage,
expiration, project env, rehome, nested clone migration, object cache,
trust, source copy privacy.
- Neighbor suites pass: `managed-repository-checkout.test.ts`,
`task-workspace-repositories.test.ts`,
`task-workspace-repositories-trust.test.ts`,
`heartbeat-project-repositories.test.ts` (47 tests). In one parallel run
under heavy machine load, `heartbeat-project-repositories.test.ts` had
timing failures in different tests on each run. The same file passed
alone with this change (47/47) and on master.
- `tsc --noEmit` for `server` passes.

## Risks

- Low risk. The new correction path is narrow and fails closed. Remote
(sandbox) workspaces keep the existing conflict because the control
plane cannot inspect the remote checkout.
- Existing receipts that failed before this change have
`repository_preparation_failed`. They need one more failed admission to
get `repository_ref_not_found` before a correction is accepted.
- No schema change. `failure_code` is free text.

## Model Used

- Claude Opus 5.5 (`claude-opus-5-5`), Anthropic, agentic coding with
tool use (shell, file edit, browser read-only diagnostics).

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have searched GitHub for duplicate or related PRs and linked
them above
- [x] I have either (a) linked existing issues with `Fixes: #` / `Closes
#` / `Refs #` OR (b) described the issue in-PR following the relevant
issue template
- [x] I have not referenced internal/instance-local Paperclip issues or
links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip`
URLs)
- [x] My branch name describes the change (e.g. `docs/...`, `fix/...`)
and contains no internal Paperclip ticket id or instance-derived details
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [ ] All Paperclip CI gates are green
- [ ] Greptile is 5/5 with no open P2s, recommendations, or follow-ups
- [x] I will address all Greptile and reviewer comments before
requesting merge

🤖 Generated with [Claude Code](https://claude.com/claude-code)

---------

Co-authored-by: Claude Opus 5.5 <noreply@anthropic.com>
2026-11-04 18:25:41 -06:00
DottaandClaude Opus 5.5 5723fd82ca fix(native): release a fresh claim when task preparation fails (#19065)
## Thinking Path

> - Paperclip is the open source app people use to manage AI agents for
work.
> - A native run claims its finalization coordinator before task
preparation. Then it starts the provider turn.
> - Task preparation can fail after the claim and before any provider
turn.
> - In that case the executor kept its claim. Failure settlement read
the claim as a live owner and stopped. Nothing failed the run.
> - The 60-second execution-control watchdog then failed the run as
`execution_finalization_deadline_exceeded`. The original error was lost.
> - This pull request releases only that exact fresh, unstarted claim
after renewal stops.
> - The benefit is that ordinary settlement fails the run at once with
its real error and keeps the workspace files. The watchdog stays a
backstop.

## Linked Issues or Issue Description

Refs #19028. That PR keeps the earlier failure code when the watchdog
fails a run. In this case no earlier code is saved, so it cannot help.
This PR removes the wait for the watchdog. I searched open PRs for
duplicates. #18820, #19034 and #19038 touch near code, but none release
a preparation claim.

**What happened?**

A native task with a prepared sandbox workspace failed during
preparation, after the controller claim committed. The coordinator
stayed `observed` and kept this controller's lease owner. The heartbeat
failure path calls workspace preservation. Preservation refuses any
lease owner without a matching restart claim, so it raised
`NativeWorkspaceFinalizationBusyError`. The heartbeat then treated
ownership as held and returned without a terminal write. About 60
seconds later the watchdog failed the run with a generic "verify the
provider stopped" action. The real error (for example
`native_harness_storage_owner_missing`) stayed only in the workspace
operation record.

**Expected behavior**

When no provider turn started under a fresh claim, settle the failure
like a failure before the claim: retain the source, fail the run with
its own error, and do not wait for the watchdog.

**Steps to reproduce**

1. Start a native run with a prepared remote workspace.
2. Make task preparation fail after `native.coordinator.claim` commits
(for example, a preparation callback throws).
3. See that the run stays `running` until the control deadline fails it
as `execution_finalization_deadline_exceeded`.

## What Changed

- `native-execution-lease.ts`: add
`releaseUnstartedNativeExecutionClaim`. It clears the lease owner and
expiry only for the exact run, company, issue, owner and attempt, while
the phase is `observed` and no result exists.
- `native-session-executor.ts`: when task preparation fails after a
fresh claim, mark that claim. The startup owner releases it after
renewal stops. A restart-recovery claim, a startup-cleanup context,
Stop, restart detach, or a different owner keeps the old behavior.
- Tests: an executor regression for the fresh and restart cases, and a
real-database test for release and workspace retention against the exact
owner, a foreign owner, a different attempt and an accepted result.
- `doc/execution-semantics.md`: state that the deadline is a backstop
and describe the release.

## Verification

- Red before the fix: `cd server && npx vitest run
src/services/native-runtime/native-session-executor.test.ts -t "releases
only a fresh claim"` fails with "releaseUnstartedNativeExecutionClaim
... Number of calls: 0".
- Green after the fix, with the same command.
- `npx vitest run
src/services/native-runtime/native-session-executor.test.ts
src/services/native-runtime/native-failed-workspace-recovery.test.ts
src/services/native-runtime/native-execution-lease.test.ts
src/services/execution-control-reconciliation.test.ts` passes (embedded
Postgres for the retention test).
- `pnpm --filter @paperclipai/server typecheck` passes.
- Not done: a live run against a real sandbox at this revision. The
staging evidence is read-only.

## Risks

- The release is fenced by the exact owner, attempt, `observed` phase
and no result. Renewal stops before the release, so a renewal cannot see
a missing owner and detach or cancel the run.
- The fix covers failures inside task preparation only. Failures later
in startup, or after a restart-recovery claim expires, still reach the
watchdog. Those keep fail-closed behavior and need separate evidence.
- If the release write fails, the run keeps the old watchdog path.

> For core feature work, check [`ROADMAP.md`](ROADMAP.md) first and
discuss it in `#dev` before opening the PR. Feature PRs that overlap
with planned core work may need to be redirected — check the roadmap
first. See `CONTRIBUTING.md`.

## Model Used

- Claude Opus 5.5 (`claude-opus-5-5`), Anthropic, with tool use and code
execution in Claude Code.

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have searched GitHub for duplicate or related PRs and linked
them above
- [x] I have either (a) linked existing issues with `Fixes: #` / `Closes
#` / `Refs #` OR (b) described the issue in-PR following the relevant
issue template
- [x] I have not referenced internal/instance-local Paperclip issues or
links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip`
URLs)
- [x] My branch name describes the change (e.g. `docs/...`, `fix/...`)
and contains no internal Paperclip ticket id or instance-derived details
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [x] All Paperclip CI gates are green
- [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups
- [x] I will address all Greptile and reviewer comments before
requesting merge

🤖 Generated with [Claude Code](https://claude.com/claude-code)

Co-authored-by: Claude Opus 5.5 <noreply@anthropic.com>
2026-11-04 18:25:36 -06:00
DottaandPaperclip 9cdbcbeddc fix(workspaces): restore archived commits from verified project objects (#19138)
## Thinking Path

> - Paperclip is the open source app people use to manage AI agents for
work.
> - An ephemeral web server must preserve historical task files outside
its local disk.
> - Archived isolated Git workspaces can have a successful
branch-deletion receipt.
> - Their private checkout can be gone while the project cache still
owns the exact commit.
> - The importer rejects that cache because it applies private-checkout
validation.
> - This pull request validates the managed object source for
receipt-based restoration.
> - The importer restores the recorded commit without using the current
shared working tree.

## Linked Issues or Issue Description

Refs #18826, #18943, #19038.

**What happened?**

An archived isolated workspace has a valid successful cleanup receipt
and a retained commit. Offline migration rejects it with
`archived_git_source_unavailable,local_source_unsafe_or_missing`. The
private checkout was removed. The company and project cache still
contains the exact commit.

**Expected behavior**

Restore the immutable commit from the verified project object cache.
Keep strict validation for saved private edit recipes. Reject missing
receipts, a foreign cache, a different origin and revoked cleanup
authority.

**Steps to reproduce**

1. Create an isolated Git workspace from a managed project cache.
2. Archive it and retain its successful branch-deletion receipt.
3. Remove its private checkout while the verified project cache retains
that commit.
4. Attempt offline workspace migration.

## What Changed

- Extract the existing managed Git object-source validator.
- Use that validator only for exact successful deletion receipts that
refer to a canonical company and project cache.
- Keep private restore-point source validation unchanged.
- Fetch immutable objects at the recorded commit into private scratch.
Recheck receipt authority before publication.
- Add real Git and database tests for restoration and rejected authority
changes. Document the preservation path.

## Verification

- 129 focused migration, concurrency and isolated-source tests pass
across three files.
- The new restoration case fails against the previous importer with the
reported source-unavailable error.
- Tests remove the old home and restore the retained commit. A newer
shared working tree and unrelated files are excluded.
- Tests reject a foreign company cache, wrong origin, missing receipt
and receipt revocation during upload.
- Local server typecheck has no diagnostics in changed files. Stale
linked dependency declarations prevent a clean local whole-server
result. Current-head full CI passes (54 passing checks, three skipped).
Greptile is 5/5 with no unresolved review threads.
- A replay of the 32 affected records is running in an isolated staging
copy. Two committed owner overlays are under test. This is not
released-image or serving-instance acceptance.

## Risks

- A deletion receipt must identify an exact commit that still exists.
Missing objects continue to block migration.
- Shared working-tree contents must never substitute for archived
private files. Only the recorded commit is fetched through this path.
- The change does not recreate private edit authority, retire recovery
records or alter serving configuration.

## Model Used

OpenAI GPT-6.1 Codex, exact model ID `gpt-6.1-sol`. Used for reasoning,
code editing, shell tools and test execution. The runtime does not
expose its context-window size.

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have searched GitHub for duplicate or related PRs and linked
them above
- [x] I have either (a) linked existing issues with `Fixes: #` / `Closes
#` / `Refs #` OR (b) described the issue in-PR following the relevant
issue template
- [x] I have not referenced internal/instance-local Paperclip issues or
links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip`
URLs)
- [x] My branch name describes the change (e.g. `docs/...`, `fix/...`)
and contains no internal Paperclip ticket id or instance-derived details
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [x] All Paperclip CI gates are green
- [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups
- [x] I will address all Greptile and reviewer comments before
requesting merge

Co-authored-by: Paperclip <noreply@paperclip.ing>
2026-11-04 18:25:08 -06:00
DottaandClaude Opus 5.5 cda9460ae9 fix(native): restart remote bootstrap after a shutdown during preparation (#19056)
## Thinking Path

> - Paperclip is the open source app people use to manage AI agents for
work.
> - Native runs in a remote sandbox go through workspace preparation
before the Runner process starts.
> - When the server restarts, restart recovery decides if a remote run
can safely restart its bootstrap.
> - A remote run that never started a Runner process, never had a lease
owner, and has no provider evidence can restart its bootstrap. Recovery
calls this an "unclaimed bootstrap".
> - A graceful shutdown (SIGTERM) suspends every running native
coordinator. It sets `leaseExpiresAt = now`, also when the coordinator
has no lease owner.
> - The unclaimed-bootstrap check requires `leaseExpiresAt` to be null.
So a deploy during workspace preparation turns a safe bootstrap restart
into `native_restart_recovery_blocked` /
`ambiguous_remote_recovery_evidence`. The task is blocked and a board
recovery action is created.
> - This pull request lets the check accept an elapsed expiry when the
coordinator has no lease owner.
> - The benefit is that a deploy during remote workspace preparation no
longer blocks the task. Every other contradictory-evidence guard stays
in force.

## Linked Issues or Issue Description

**What happened?**

On a staging instance, three remote-sandbox runs failed with
`native_restart_recovery_blocked` and
`ambiguous_remote_recovery_evidence` after one deploy. Each run was in
native workspace preparation (`snapshot.git`, `pack`, `seed.verify`,
`stage.workspace`). No run had a process start, a process identity, a
provider event, or a checkpoint. The graceful shutdown event was the
only coordinator change. The next server then blocked each run in
restart recovery.

**Expected behavior**

A remote run that was suspended during preparation, before any Runner
launch or lease claim, restarts its bootstrap on the same run. Recovery
does not block the task.

**Steps to reproduce**

1. Prepare a remote native run (prepared native workspace sync, fenced
preparation, no process, no checkpoint).
2. Call `drainRunningRunsForShutdown("SIGTERM")` for the run.
3. Call `claimNativeRestartRecoveries` as a successor controller with
`restartKind: "hard"`.
4. Observe `{ kind: "blocked", reason:
"ambiguous_remote_recovery_evidence" }`. Without step 2, the same run
gets `bootstrap_incomplete`.

**Paperclip version or commit**

Reproduced on `master` at `be20d4ad97`.

**Deployment mode**

Remote sandbox environments with PostgreSQL.

Related: #18877 (remote checkpoint retry reclaim) and #18854
(pre-provider startup retry). Neither changes this predicate.

## What Changed

- `claimNativeRestartRecoveries`: the unclaimed remote bootstrap check
accepts `leaseExpiresAt` when the coordinator has no lease owner and the
expiry has elapsed. A null owner with an elapsed expiry grants no
authority.
- New regression: a remote run suspended by the real graceful-shutdown
drain during preparation is claimed as `bootstrap_incomplete`, with no
recovery action.
- New safety case: an ownerless coordinator with an unexpired lease
expiry still blocks with `ambiguous_remote_recovery_evidence`.

## Verification

- Red before the fix: `npx vitest run
src/services/native-runtime/native-runner-restart-recovery.integration.test.ts
-t "graceful shutdown suspended during preparation"` returned `blocked`
/ `ambiguous_remote_recovery_evidence`.
- Green after the fix: the same test returns `bootstrap_incomplete` with
`providerAttempt: 0` and `controllerGeneration: 1`.
- The existing contradictory-evidence cases (`claimed`, `generation`,
`process`, `launch`, `provider-event`, `checkpoint`,
`invalid-workspace`, `unfenced`) and the new `unexpired-lease` case
still block.
- Full `native-runner-restart-recovery.integration.test.ts` suite and
server `tsc --noEmit` pass locally.
- Not run: a live deploy on a remote sandbox. The fix is not deployed.
The original blocked tasks are not recovered by this change.

## Risks

- Low risk. The change relaxes one field of one predicate. All other
unclaimed-bootstrap conditions stay: prepared workspace, fenced
preparation, attempt 0, generation 0, no controller identity, no lease
owner, no process identity, no session, no checkpoint, no provider
evidence, and no launch or tool event.
- The executor still requires the durable PRP root to prove an
incomplete bootstrap before it starts a fresh bootstrap.

> For core feature work, check [`ROADMAP.md`](ROADMAP.md) first and
discuss it in `#dev` before opening the PR. Feature PRs that overlap
with planned core work may need to be redirected — check the roadmap
first. See `CONTRIBUTING.md`.

## Model Used

- Anthropic Claude Opus 5.5 (`claude-opus-5-5`) in Claude Code, with
tool use (shell, file edits, browser reads of staging). Standard context
window.

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have searched GitHub for duplicate or related PRs and linked
them above
- [x] I have either (a) linked existing issues with `Fixes: #` / `Closes
#` / `Refs #` OR (b) described the issue in-PR following the relevant
issue template
- [x] I have not referenced internal/instance-local Paperclip issues or
links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip`
URLs)
- [x] My branch name describes the change (e.g. `docs/...`, `fix/...`)
and contains no internal Paperclip ticket id or instance-derived details
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [ ] All Paperclip CI gates are green
- [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups
- [x] I will address all Greptile and reviewer comments before
requesting merge

🤖 Generated with [Claude Code](https://claude.com/claude-code)

Co-authored-by: Claude Opus 5.5 <noreply@anthropic.com>
2026-11-04 18:24:47 -06:00
DottaandClaude Opus 5.5 367aa16800 fix(daytona): drop the stale session id on every sandbox restart (#19050)
## Thinking Path

> - Paperclip is the open source app people use to manage AI agents for
work
> - Native agent runs can execute inside a Daytona sandbox through the
Daytona sandbox provider plugin
> - The plugin runs every command for a lease in one persistent Daytona
process session and keeps that session id in memory
> - Daytona auto-stops an idle sandbox, and a stopped sandbox loses all
of its process sessions
> - Only the execute and resume hooks dropped the stored session id
before a restart. Workspace realize, sync-in, sync-out, runner ingress,
and interactive setup also restart a stopped sandbox, but they kept the
dead id
> - When host-side workspace preparation stays idle for longer than the
auto-stop interval, sync-in restarts the sandbox, and the next command
sends the dead id. The native run then fails with
`native_session_interrupted: session not found`
> - This pull request moves the session-id clear into the one shared
start helper, so every restart path drops the stale id
> - The benefit is that a run that waits through a long preparation
opens a fresh session instead of failing

## Linked Issues or Issue Description

**What happened?**
Native runs on Daytona failed with `native_session_interrupted` and the
error `session not found`. The failure came about 4 seconds after the
provider session started. In every observed run, the workspace pack
phase took longer than 15 minutes (917 s to 1442 s). This is longer than
the default Daytona `autoStopInterval` of 15 minutes.

**Expected behavior**
After Daytona restarts an auto-stopped sandbox, the next command opens a
new process session and the run continues.

**Steps to reproduce**
1. Run one command on a Daytona lease, so the plugin opens and stores a
session.
2. Let the sandbox stop (Daytona auto-stop after an idle gap).
3. Call workspace realize or sync-in on the lease. The hook restarts the
sandbox.
4. Run the next command. It uses the stored session id, and Daytona
answers `session not found`.

No related open PR exists. The undeployed native fixes on master
(#18992, #19025, #19026, #19004) do not touch the Daytona session store.

## What Changed

- `ensureSandboxStarted` in the Daytona plugin now takes the lease
scope. When the sandbox is not running, it clears the stored session id
before it starts or recovers the sandbox.
- All seven callers (execute, resume, realize workspace, interactive
setup, runner ingress, sync-in, sync-out) pass their lease scope. The
compiler enforces the scope on any new caller.
- The execute hook no longer has its own copy of the clear. The resume
hook keeps its clear because it also closes duplex channels before the
restart.
- Added three regression tests: a fresh session after realize restarts
an auto-stopped sandbox, a fresh session after sync-in restarts it, and
no new session when realize finds the sandbox already running.

## Verification

- Red before the fix: `pnpm exec vitest run src/plugin.test.ts -t
"auto-stopped sandbox|already running"` in
`packages/plugins/sandbox-providers/daytona`. The two restart tests
failed with `expected "vi.fn()" to be called 2 times, but got 1 times`.
The running-sandbox safety test passed.
- Green after the fix: the full Daytona plugin suite (`pnpm exec vitest
run`) passes, 542 passed and 8 skipped.
- `pnpm typecheck` in the Daytona plugin package passes.
- Not done: a live Daytona run that idles past the auto-stop interval.
The fix needs deployment before the staging failure can be checked
again.

## Risks

- Low risk. The clear runs only when the sandbox is not in the `started`
state. A stopped sandbox has no live session, so no live shell can leak.
A running sandbox keeps its stored session, and a test covers this case.
- The recover path for a recoverable `error` state now also drops the
id. A recovered sandbox restarts, so its old session is also gone.
- Duplex channels on a restarted sandbox are still closed only by the
resume hook. This PR does not change that behavior.

## Model Used

- Claude Opus 5.5 (`claude-opus-5-5`), Anthropic, used through Claude
Code with tool use (shell, file edits, browser reads of staging run
records).

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have searched GitHub for duplicate or related PRs and linked
them above
- [x] I have either (a) linked existing issues with `Fixes: #` / `Closes
#` / `Refs #` OR (b) described the issue in-PR following the relevant
issue template
- [x] I have not referenced internal/instance-local Paperclip issues or
links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip`
URLs)
- [x] My branch name describes the change (e.g. `docs/...`, `fix/...`)
and contains no internal Paperclip ticket id or instance-derived details
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [x] All Paperclip CI gates are green
- [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups
- [x] I will address all Greptile and reviewer comments before
requesting merge

🤖 Generated with [Claude Code](https://claude.com/claude-code)

Co-authored-by: Claude Opus 5.5 <noreply@anthropic.com>
2026-11-04 18:24:41 -06:00
Dotta 9c6993f0aa test(evals): pin corrected chat catalog and restore retained attachments (#19135)
## Thinking Path

> - Paperclip uses real Product E2E journeys to verify agent work.
> - The trusted TestOps controller must bind the reviewed source and
retain inspectable evidence.
> - The last uniform attempt exposed bounded observation and
evidence-retention defects. Its original outcomes remain unchanged.
> - The reviewed successor corrects those boundaries with the original
model, requests, counts, and clocks.
> - Its private framework report stores canonical attachments once. The
controller must validate and restore those references before normal
reporting.
> - This PR ports that reader support and pins the qualified source in
one infrastructure change. It does not merge the full catalog or its
core repair PRs.

## Linked Issues or Issue Description

Refs #19127, #19083, #19086, #19084, #19093, #19095, #19100, #19112.

**What happened?**

The last uniform attempt retained real failed outcomes. It also lost the
multipart-question original when evidence packaging exceeded its
unchanged physical byte allowance. Review found independent boundaries
in skill navigation, announcement observation, timeline attribution,
hire history, credential questions, and team visibility.

**Expected behavior**

The next run must execute the same ten requests against one reviewed
source. The controller must retain complete original evidence, validate
private attachment references, and report the actual outcome. Historical
failures and missing-original UNKNOWN grades must remain unchanged.

**Steps to reproduce**

Use the focused source controls linked above. The private framework
control uses a real failed Playwright test and a 140 MiB attachment.
Legacy duplicate carriers hit the old cap. Canonical original evidence
passes both seals and strict archive restoration. The controller
restores derived files and the existing TestOps exporter preserves the
failed result.

**Paperclip version/commit**

Qualified candidate: `155dd1bc1c4b85ae107f6a0cd429720caa281367`. The
controller port is based on current master. The full candidate catalog
stays on its own immutable branch.

**Deployment mode**

Existing AWS/TestOps job 100, plan 102, branch master. This PR does not
dispatch a run.

## What Changed

- Pin the published qualified source and its exact launcher and
descriptor fixtures.
- Preserve current manifest history. Update twelve declaration fields
across eleven cases: oracle versions and skill source-file provenance
only. Preserve all 244 identities, 242 canonical declarations, queries,
setup, human/native counts, clocks, profile, model, retry policy, and
global cap of 8.
- Port the exact source-owned compact framework helper and
private-transfer reader. Keep the three existing required
source/controller protocol helpers byte-identical.
- Validate both sealed inventories before restoring registered
attachments into the derived selected report tree. Verify exact bytes
and hashes. Preserve seals and unregistered evidence.
- Keep deep JSON, decoded-body, sensitive-key, path, and original/final
status checks. Plain-text bodies and registered plain files fail closed
if existing diagnostic redaction would change them; JSON remains under
structured inspection. Keep all existing physical byte, entry, ZIP,
time, privacy, and archive bounds.
- Preserve registered clean metadata and attachment bytes. Reject
content that needs privacy redaction instead of silently rewriting
immutable evidence.

## Verification

- 131 existing Node pin, selection, admission, adapter, reconciliation,
and security controls pass. The explicit new target assertion and drift
negatives remain active.
- 86 current-controller controls pass. They cover legacy reports,
privacy and static assets, canonical reference guards, both seals,
strict archive restoration, derived files, the actual report normalizer,
and the actual TestOps/Allure exporter. The original failed result stays
failed; screenshot and trace hashes resolve.
- Actual P1 controls reject both an unknown password in a decoded
plain-text body and an unknown command token in a registered text file.
Parent code fails both controls; corrected code passes. The composed
source passes 87 affected controls, fresh server declarations, and full
E2E typechecking. The old cfe head completed all 49 CI jobs without
adverse conclusions, but its review found this real privacy defect. That
CI result is not credited to this successor.
- The existing report-lock preflight returns already-reviewed at
`60f4c06bca47af3ab9d74281f2ef2e1ff559d566b862ba51c2fbe6c8e5bac35b`.
- The existing source SDK guard confirms 506 registered inputs,
unchanged registry
`efa70621e9fb42aa185f7ee616a1a726aa3eccb367e67e28817cedf26ef2ade8`, and
unchanged runtime pins. No registry renewal or SDK build was needed.
- Source launcher SHA-256:
`2b9a6953ee51f0ea0dbbd475b0491d9a6c39a1d6835eeaa912e0dbb7cf987724`.
Descriptor SHA-256:
`e026d5c000102f8d50397dc59055d187388304f91dbca9a6ccfbe747004cd16d`.
- No model call, evaluation dispatch, evidence download, reporting
retry, core merge, or permission change was performed. Full current-head
CI and review are pending. Separate source PR failures remain disclosed;
local controls do not establish universal source CI readiness.
- Seven cases have verified passing historical attempts. A uniform
passing ten-case run remains unverified. The old lost multipart-question
original remains UNKNOWN.

## Risks

This changes a trusted evidence reader and the source selected for
future measurements. The new helper is included in the controller import
closure. Compact references require matching originals; missing,
foreign, changed, unsafe, or redaction-required evidence fails closed.
Legacy reporter formats remain valid. A single canonical evidence set
can still exceed a bound. Current-head CI and material review must pass
before normal protected merge. Actual AWS/TestOps evidence remains
required afterward.

## Model Used

OpenAI `gpt-6.1-sol`, with reasoning, code editing, and tool use. The
host does not expose the context-window size.

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have searched GitHub for duplicate or related PRs and linked
them above
- [x] I have either (a) linked existing issues with `Fixes: #` / `Closes
#` / `Refs #` OR (b) described the issue in-PR following the relevant
issue template
- [x] I have not referenced internal/instance-local Paperclip issues or
links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip`
URLs)
- [x] My branch name describes the change (e.g. `docs/...`, `fix/...`)
and contains no internal Paperclip ticket id or instance-derived details
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [ ] All Paperclip CI gates are green
- [ ] Greptile is 5/5 with no open P2s, recommendations, or follow-ups
- [x] I will address all Greptile and reviewer comments before
requesting merge
2026-11-04 18:20:22 -06:00
DottaandPaperclip 7d46532c6d fix(runtime): bound parallel offline harness backup transfers (#19108)
## Thinking Path

> - Paperclip is the open source app people use to manage AI agents for
work.
> - An ephemeral web server must retain provider history outside its
local disk.
> - Offline enrollment moves verified local harness backups to object
storage.
> - A cold rehearsal reached 699 current backup rows while processing
1,953 sources before its 25-minute deadline.
> - The serial transfer loop prevents this existing dataset from
enrolling.
> - This pull request overlaps at most four transfers within the
existing total scratch limit.
> - The benefit is faster preservation with the same ownership and
publication checks.

## Linked Issues or Issue Description

Refs #19038, #18943, #18932.

**What happened?**

Offline enrollment processed 1,953 local provider backups one at a time.
The normal Cloud image reached 699 current backup rows (including nine
pre-existing rows) before maintenance expired. The serving instance
remained unchanged during the isolated test.

**Expected behavior**

Enrollment must preserve every source within bounded time and disk use.
It must stop all in-flight transfers before it reports failure.

**Steps to reproduce**

1. Prepare a settled instance with multiple verified native harness
backups.
2. Run offline enrollment against shared object storage.
3. Observe that the serial owner waits for each archive, upload,
readback and publication before starting the next source.

## What Changed

- Process groups of up to four verified offline harness backups.
- Reserve space for the archive and encrypted copy before each group
starts. Keep the total scratch limit equal to one maximum-size serial
transfer.
- Derive a smaller archive limit from a closed manifest directory set.
Preserve unlisted files with an exclusive maximum-size reservation.
- Enforce the reservation while streaming. Keep the existing maximum for
ordinary runtime backups.
- Cancel and await peer transfers after failure. Keep completed
publications valid for retry.
- Preserve the original archive-stream failure when the tar writer also
fails after destruction.
- Document the migration bound and add integration regressions for
overlap, restoration, cancellation, retry, extra files and archive
limits.

## Verification

- Serial baseline: the new overlap regression fails with one active
transfer when four are required.
- Candidate: 59 targeted tests pass with real PostgreSQL, S3, filesystem
archives and restored provider bytes. The bundled-entry test is skipped
locally because this source worktree has no runtime bundle. The full
normal image rehearsal remains required.
- Follow-up: 48 archive/storage checks pass after correcting the
PAX-header allowance. The real encoder produces a 972,801,024-byte
full-entry projection, above the old 805,306,368-byte allowance and
below the new 1,024,001,024-byte bound. The existing global object limit
remains in force. The old formula fails the new regression. Exact-size
restoration and one-byte-over-limit rejection pass.
- The previous revision passed full CI after one setup-route timeout
retry. That failure remains recorded; the corrected current revision
f7c2be1289 passed fresh full CI (41937700826) and Greptile 5/5. Its
review thread is resolved.
- Local server typecheck found four test-only Promise library errors;
those are fixed. The remaining 26 diagnostics come from stale linked
dependency declarations outside the changed files. Clean full CI is
required before merge.
- The resumed isolated staging-copy experiment also exceeded its
25-minute deadline. It reached 1,389 current backups. This improves
transfer throughput but does not by itself qualify enrollment; online
preparation is tracked in #19137.
- Full fresh normal-image migration, empty-home restoration and hosted
release handoffs remain deployment acceptance gates.

## Risks

- Parallel work increases concurrent object-storage and database
requests to at most four transfers. The scratch reservation still bounds
archive and ciphertext files together.
- A malformed or changed source can fail its streaming limit. The
migration retains its source and stops before export.
- Partial completed publications survive failure. Retry verifies them
under the existing hash and ownership rules.
- No serving configuration, deployment pin, database contract or
provider lifecycle policy changes in this pull request.

## Model Used

OpenAI GPT-6.1 Codex, exact model ID `gpt-6.1-sol`. Used for reasoning,
code editing, shell tools and test execution. The runtime does not
expose its context-window size.

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have searched GitHub for duplicate or related PRs and linked
them above
- [x] I have either (a) linked existing issues with `Fixes: #` / `Closes
#` / `Refs #` OR (b) described the issue in-PR following the relevant
issue template
- [x] I have not referenced internal/instance-local Paperclip issues or
links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip`
URLs)
- [x] My branch name describes the change (e.g. `docs/...`, `fix/...`)
and contains no internal Paperclip ticket id or instance-derived details
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [x] All Paperclip CI gates are green
- [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups
- [x] I will address all Greptile and reviewer comments before
requesting merge

---------

Co-authored-by: Paperclip <noreply@paperclip.ing>
2026-11-04 18:16:36 -06:00
fb96537e28 test(ui): verify disconnect recovery through browser outages (#18832)
## Thinking Path

> - Paperclip lets people manage agent work through the board.
> - Deploys can interrupt reads and writes while people use the board.
> - Component tests cannot prove the browser keeps task content and
saved drafts through a reload.
> - The read and cache changes need a regression suite against the built
app.
> - This pull request drives those journeys through temporary API
failures.
> - CI discovers the new suite through the existing e2e shard plan.

## Linked Issues or Issue Description

**What happened?**
Outage recovery lacked one browser suite covering retained content,
write recovery, cached reloads, access errors and sign-out clearing
together.

**Expected behavior**
Keep loaded task content visible through a 20-second API outage. Show
one connection banner and its recovery state. Save comments once and
retain document edits. Restore approved reads after a reload. Keep real
error responses readable and clear query records on sign-out.

**Steps to reproduce**
Open a task or settings. Return 503 with `tenant_app_unavailable` from
browser API requests for 20 seconds. Type a comment, edit a document, or
reload. Restore the API and compare the visible result with the saved
server state. Repeat with real 403/404 statuses and sign-out.

Stacked on Refs #18825, which depends on Refs #18822. Related
durable-write foundation: Refs #17960.

## What Changed

- Add `disconnect-resilience.spec.ts` with ten browser cases for
comments, a queued comment across reload, document autosave, cached
settings/sidebar/task reads, legacy Inbox reloads, 403 and 404
responses, sign-out clearing, restored-draft conflict detection, and
first-socket outage control.
- Assert one connection banner, readable recovery, no transient error
boxes or raw codes, retained task text, one saved comment, and the saved
document after reload.
- Use the real local server and isolated embedded PostgreSQL. Intercept
browser API traffic for outages. Control the logout/session response for
the sign-out test. Create no agents or model runs.
- Register realtime interception before navigation. Track both ends of
current sockets, close them at outage start, and keep reconnects
unavailable through the HTTP outage deadline. Preserve normal close
forwarding and close tracked pairs during teardown. The regression
captures the first browser socket without waiting for history or open,
then checks that the outage closes it.
- Prepare complete server-derived experimental settings and workspace
preferences before the legacy Inbox navigation. Its route callbacks
serve per-test snapshots across reloads, avoiding reads from disposed
route.fetch responses.
- Document the direct test command. The existing CI e2e shards already
discover this file exactly once; no workflow or package script is added.

## Verification

- Current head `228c1b68d30` is merge-ready: all 54 check runs completed
(52 successful, one skipped, one neutral), the legacy Snyk status is
successful, and both required gates pass. The single failed-jobs debug
rerun in run `41752978283` passed on attempt 2, including Runner package
job `126328280650` and `verify` job `126332119116`. Greptile Apex
reviewed this exact head at 5/5 with zero unresolved threads; the branch
has no merge conflicts. The three-PR stack is awaiting operator merge
approval.
- Original attempt 1 of current-head CI run `41752978283` had 46
successful jobs, one skipped and two failed: Runner package tests and
the downstream `verify` gate. GitHub reports lost communication with the
Runner host; the test step was cancelled, its log returns HTTP 404, and
no Runner diagnostic artifact is available. The underlying test outcome
and disconnection cause are unknown. One failed-jobs retry with debug
logging was accepted after verifying the unchanged current head and
passed on attempt 2. No source change was made; earlier passing CI and
local tests do not certify this incomplete Runner result. Current-head
CI now passes; the earlier disconnection cause remains unknown.
- Preceding head `6531caccf62` reached merge-ready: all 54 check runs
completed (52 successful, one skipped, one neutral), the legacy Snyk
status was successful, and both required gates passed in run
`41749512329`. Greptile reviewed that exact head at 5/5 with zero
unresolved threads. Current head `228c1b68d30` carries later
account-preference and bulk-selection fixes and now has its own passing
current-head CI.
- All 23 built-UI outage/write/loading cases pass in 4.5 minutes on
exact current head `228c1b68d30`: ten outage, six durable-write and
seven loading cases. The run used bundled Chromium, a fresh
local-trusted server and isolated embedded PostgreSQL on macOS
arm64/Node 25.6.1. Owned temporary server and database stopped.
- Current integrated head `228c1b68d30` contains cache revision
`fe4f682c879` and read head `09d1db29dea`. The exact application source
passes all 1,198 focused tests across twenty-eight files, UI typecheck
and both guards. Seventeen new cases cover restored-account settings,
owned crown cleanup and pending bulk selections; sixteen fail the
previous source and one preserves denial compatibility. All three
browser specs pass standalone strict checking. All 23 current-head
browser cases pass in 4.5 minutes.
- Application revision `9c1a10f25d9` passed all 1,137 focused tests
across twenty-one files, UI typecheck and both guards. Exact preceding
application/spec head `4fec693ec94` passed all 23 built-UI
outage/write/loading cases in 4.6 minutes and standalone strict checking
of all three specs. It used bundled Chromium, fresh isolated PostgreSQL
and local-trusted auth on macOS arm64/Node 25.6.1. Owned test processes
stopped.
- Preceding integrated head `870aa709657`, containing cache
`cbb891dd37d`, passes all 23 built-UI outage/write/loading cases in 4.6
minutes: ten outage cases, six durable-write cases and seven loading
cases. It used bundled Chromium, the built UI, a fresh local-trusted
server and isolated embedded PostgreSQL on macOS arm64/Node 25.6.1.
Owned test processes stopped.
- The earlier head `763fe431b74` passes the affected legacy Inbox
outage/reload case (34.3 seconds; 50.8 seconds including startup) and
strict three-spec checking after the response-snapshot fix. The
preceding head `973a12d77f4` passed all 23 built-UI outage/write/loading
cases in 4.6 minutes: ten outage cases, six durable-write cases and
seven loading cases. Its first-socket regression fails the previous
helper because that socket stays open. The run used bundled Chromium,
the built UI, fresh isolated PostgreSQL and local-trusted auth on macOS
arm64/Node 25.6.1. That earlier isolated callback revision was verified
with its affected case; the later application/spec head `4fec693ec94`
also passes the full suite. Owned test servers and databases stopped.
- The current base gives known skills/app errors priority over sibling
loading. All 60 affected tests and both application UI typechecks
passed. Its twelve new regressions failed the preceding source. All 47
recovery-worker tests and seven related Runner fixture variants also
passed during the historical CI audit; those focused checks do not claim
a full current server/Runner suite.
- All 22 outage/write/loading cases passed in 4.7 minutes on preceding
integrated head `b7deaaee5da`, including direct cache revision
`97c0bc3966f`. The run used the built UI, bundled Chromium and a fresh
local-trusted server with isolated embedded PostgreSQL on macOS
arm64/Node 25.6.1. It covered all nine outage, six durable-write and
seven loading cases. The owned temporary server and database stopped.
- All 1,038 focused tests passed on that direct cache revision, with UI
typecheck and guards. Six regressions failed the previous source: online
retries could trigger a hidden-tab worker reload, and sign-out failed
without crypto.randomUUID. Both modes and stamp states now pass.
Standalone strict checking passes for all three browser specs.
- The restored cached-A/draft-B/server-C test asserts zero replay
PATCHes and retains the conflict. The queued-comment case holds fresh
session verification after general API recovery and asserts zero POSTs
until release. Denial, logout and cached-navigation cases require saved
records. Sign-out seeds several company records to exercise native
Storage key reordering. Healthy navigation waits for
conversation-history readiness.
- Earlier runs exposed real cached-header, storage cleanup and replay
defects in the base. Those failures and corrected fixture assumptions
remain in the discussion. A prior run passed 21/22 while real sockets
remained available during simulated HTTP failures. A diagnostic trace
established the contradiction. The first repair gated new sockets, but
review identified the first pre-existing socket still escaping. This
revision intercepts before navigation and closes existing pairs too. The
new regression fails the preceding helper, and all 23 current cases pass
without weaker assertions. Shared-memory exhaustion prevented two
earlier diagnostic startups; only unused segments from completed owned
test databases were removed.
- All six separate cross-organization link/upload variants passed on an
earlier integrated base. Standalone strict checking of that unrelated
spec reports five existing errors in its shared fixture; this PR does
not claim that check passes.
- CI on older head `53d979e384c` failed the legacy Inbox case with
`apiResponse.json: Response has been disposed` inside a route.fetch
callback. Its other 25 cases passed and one skipped. The seven other
browser shards succeeded; the aggregate only reports that child failure.
The new snapshot callbacks remove those fetched-response lifetimes.
Original CI evidence remains recorded in the discussion.
- Greptile Apex reviewed exact current head `228c1b68d30` at 5/5 with no
actionable findings and zero unresolved threads (summary updated
2026-11-04 at 01:26:14 UTC). The branch has no merge conflicts.
Current-head CI now passes; the earlier disconnection cause remains
unknown. Controlled local outages do not prove hosted authentication or
a real Cloud restart/deploy.

Commands run:

```sh
pnpm exec playwright test --config tests/e2e/playwright.config.ts tests/e2e/disconnect-resilience.spec.ts --grep 'a legacy Inbox reload retains' --reporter=list
pnpm exec playwright test --config tests/e2e/playwright.config.ts tests/e2e/disconnect-resilience.spec.ts tests/e2e/disconnect-write-recovery.spec.ts tests/e2e/task-loading-frame.spec.ts --reporter=list
pnpm exec tsc --ignoreConfig --noEmit --strict --target ES2022 --module NodeNext --moduleResolution NodeNext --skipLibCheck tests/e2e/disconnect-resilience.spec.ts tests/e2e/disconnect-write-recovery.spec.ts tests/e2e/task-loading-frame.spec.ts
```

## Risks

The suite adds about three minutes to one e2e shard and depends on
current accessible UI controls. It uses controlled outages and logout
responses. A passing local run must not be treated as real deployment
acceptance. There are no production behavior, schema, dependency, or API
changes in this PR.

## Model Used

OpenAI `gpt-6.1-sol` through Codex, with xhigh reasoning effort, tool
use, and code execution. The context window size is not exposed.

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have searched GitHub for related PRs and linked them above
- [x] I have described the issue following the bug report template
- [x] I have not referenced internal/instance-local Paperclip issues or
links
- [x] My branch name describes the change and contains no internal
ticket id
- [x] All 23 built-UI cases pass on current head `228c1b68d30`
- [x] All three browser specs pass standalone strict typechecking on the
current head
- [x] The current application source passes all 1,198 focused tests, UI
typecheck and both guards
- [x] I have added tests and updated relevant documentation
- [x] I have considered and documented risks above
- [x] All Paperclip CI gates are green
- [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups
- [x] I will address all Greptile and reviewer comments before
requesting merge

---------

Co-authored-by: devinfoley <139239+devinfoley@users.noreply.github.com>
Co-authored-by: Paperclip <noreply@paperclip.ing>
Co-authored-by: Bender (Fable) <bender@agents.paperclip.ing>
Co-authored-by: Claude Fable 5.1 <noreply@anthropic.com>
2026-11-04 16:11:02 -08:00
ea6bd15e2a fix(native): record why finalization failed a run (#19063)
## Thinking Path

> - Paperclip is the open source app people use to manage AI agents for
work.
> - A native run finishes in two steps: the provider turn, then
finalization. Finalization saves the workspace and commits the result.
> - When finalization exhausts its retries, `recordRetryableFailure`
sets the run to `failed` and blocks the task.
> - That code writes the cause only to `resultJson.failureCode`. It does
not write the run's `errorCode` or `error`.
> - So the run list, inbox, and agent status show a failed run with no
reason. Operators cannot tell why the run failed.
> - This pull request writes the finalizer's terminal failure code and a
readable message to the run row when the finalizer fails the run.
> - The benefit is that every failed run now names its cause.

## Linked Issues or Issue Description

**What happened?**

A hosted instance had 11 assigned native runs with status `failed`,
`errorCode` null, and `error` null in one day. In each run, the provider
turn succeeded. The remote workspace copy-back then failed three times.
The finalizer set the run to `failed` and blocked the task. The run kept
no error code. `resultJson.failureCode` was
`native_workspace_sync_out_retry_exhausted`, but no screen shows that
field as the failure reason.

**Expected behavior**

A failed run has an `errorCode` and an `error`. The failure surfaces
show why the run failed.

**Steps to reproduce**

1. Create a native run with a finalization coordinator.
2. Call `recordNativeFinalizationFailure` three times with
`native_workspace_sync_out_failed` and `failureScope: "workspace"`.
3. Read the run. Its status is `failed`, and its `errorCode` and `error`
are null.

**Paperclip version or commit**

`master` at be20d4ad97.

## What Changed

- `recordRetryableFailure` in
`server/src/services/native-runtime/native-run-finalizer.ts` now sets
`errorCode` to the terminal failure code and `error` to a readable
message when it projects a run to `failed`. This covers
`native_workspace_sync_out_retry_exhausted`,
`native_workspace_sync_out_unrecoverable`, and
`native_finalization_retry_exhausted`.
- The update keeps an earlier root `errorCode` and `error` (`coalesce`).
- The update does not change a run that Stop already cancelled. It uses
the same row-level `case` as the status write.
- The update does not add an error when the finalizer projects the run
as `succeeded` or `cancelled`.
- New tests in `native-run-finalizer-telemetry.test.ts` cover the failed
projection, root-cause retention, concurrent cancellation, a retry that
remains, the provider-scope failure, and the provider-succeeded
projection.

## Verification

- `cd server && npx vitest run
src/services/native-runtime/native-run-finalizer-telemetry.test.ts`
- Before the fix, three tests failed because `errorCode` was null:
"bounds workspace-only retries…", "records the finalization error code
when provider-scope retries fail…", and "blocks immediately when the
sandbox… is gone".
- After the fix, all tests in the file pass.
- Related suites pass: `native-workspace-export-retry`,
`native-run-projection-work`, `explicit-native-continuation`,
`execution-control-work`, `native-status-arbiter-corpus`, and
`workspace-recovery` (971 tests). One `workspace-recovery` test timed
out at 30 s under the parallel load. It passes when run alone.
- Downstream checks: the export retry path
(`native-workspace-export-retry.ts`) and the success projection
(`native-run-projection.ts`) already clear `error` and `errorCode` when
they reopen or succeed a run. A later recovery therefore does not keep a
stale error.

## Risks

- Low risk. The change only writes two columns that were null for these
runs.
- `error` is now also the agent status reason and the lease failure
reason for these runs. Before, the agent reason fell back to
`native_workspace_sync_out_failed`.
- This change does not fix the first cause of the copy-back failures.
The remote capture reports only the generic
`remote_workspace_operation_failed`, because the capture output is
redacted. That cause needs separate work.

> For core feature work, check [`ROADMAP.md`](ROADMAP.md) first and
discuss it in `#dev` before opening the PR. Feature PRs that overlap
with planned core work may need to be redirected — check the roadmap
first. See `CONTRIBUTING.md`.

## Model Used

- Anthropic Claude Opus 5.5 (`claude-opus-5-5`), used in Claude Code
with tool use (shell, file edit, read-only browser).

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have searched GitHub for duplicate or related PRs and linked
them above
- [x] I have either (a) linked existing issues with `Fixes: #` / `Closes
#` / `Refs #` OR (b) described the issue in-PR following the relevant
issue template
- [x] I have not referenced internal/instance-local Paperclip issues or
links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip`
URLs)
- [x] My branch name describes the change (e.g. `docs/...`, `fix/...`)
and contains no internal Paperclip ticket id or instance-derived details
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [ ] All Paperclip CI gates are green
- [ ] Greptile is 5/5 with no open P2s, recommendations, or follow-ups
- [x] I will address all Greptile and reviewer comments before
requesting merge

🤖 Generated with [Claude Code](https://claude.com/claude-code)

---------

Co-authored-by: Claude Opus 5.5 <noreply@anthropic.com>
Co-authored-by: Paperclip <noreply@paperclip.ing>
2026-11-04 18:07:35 -06:00
Nicky LeachandPaperclip a0c0851766 Runner: add private host control channel (#19129)
## Thinking Path

> - Paperclip coordinates AI agents and their execution.
> - A hosted Runner can remain alive between turns.
> - Its host needs to park, claim, or retire that process without a
persistent Core connection.
> - Those requests need a private channel with bounded input and safe
retries.
> - This PR adds the channel codec and socket handling as an isolated
foundation.
> - Later lifecycle changes will validate and execute the requests.

## Linked Issues or Issue Description

**Current behavior**
The Runner has no task-private host control channel. The earlier
combined lifecycle change was split for review.

**Proposed behavior**
Add a private Unix stream protocol for host lifecycle requests. This PR
does not wire it into Runner startup or advertise support. It can be
reviewed independently of stopped-process recovery.

**Reason and benefit**
Review frame parsing, credential handling, and retry behavior before
adding park and claim transitions. This replaces the transport portion
of #19060. The source-recovery work supersedes #19057 and #19058.

## What Changed

- Add `host_control.rs` and enable the existing rustix dependency's
socket APIs.
- Accept only a connected Unix stream. Set close-on-exec so provider
children do not inherit it.
- Bound request frames to 16 KiB. Reject unknown fields, malformed
requests, and EOF with a credential-free error.
- Add socket-pair tests for framing, deadlines, retries, conflicts, and
receipt-window reset in a separate test file.

### Transport contract

Each request is one newline-delimited JSON object. Each response is `{
"id": "request-id", "status": "..." }` followed by a newline.

| Request | Required binding | Intended effect in the later lifecycle
consumer |
| --- | --- | --- |
| `park` | Six Runner identity fields, last controller command sequence,
acknowledged source sequence | Retain the process and mounts after the
controller has settled that exact cut |
| `claim` | Park request ID and a fresh bootstrap ticket | Reconnect the
retained process through authenticated bootstrap |
| `retire` | Park request ID; optional claim ID and identity/sequence
cut | Retire only the matching parked or claimed process |

The six identity fields are Runner instance, environment lease, run,
normalized session, turn, and item IDs. This module only parses requests
and sends responses. The lifecycle consumer must validate these bindings
before performing an effect.

Before applying a request, the consumer checks the in-memory response
cache. An identical retry receives its prior status. Reusing a completed
request ID with different content returns `conflict`. Conflict responses
do not reserve an ID. A successful `parked` response starts a new cache
window; the consumer's identity, sequence, and park-ID checks must
reject requests from older windows. Credentials are neither persisted
nor included in errors.

Active reads are nonblocking. Parked reads block on socket input and may
have a caller-supplied receive deadline. Partial frames do not extend
that deadline. No idle polling is added.

## Verification

- `cargo test --offline --locked --manifest-path
packages/paperclip-runner/runner/Cargo.toml -p paperclip-runner-core
--lib host_control::` — 6 passed.
- Confirmed the repeated-chunk test fails when reads incorrectly reset
the original deadline. Restored production code and reran the targeted
suite.
- The initial policy gate did not recognize inline Rust tests. Moved the
same tests to the existing `src/tests/` convention.
- GitHub CI passed on `aaac996aba76`. Greptile is 5/5 on that commit,
with no unresolved review threads.
- A local merge-tree check against current master `1a7eb70a37bf` is
conflict-free.
- Reviewed changed lines for secrets, personal data, and private
deployment references before push.

## Risks

The module is dormant in this PR. It does not make a VM sleep, detach
Core, or evict a Runner. Integration must enforce the documented
identity and sequence fences before replying with success. The response
cache is process-local and does not provide recovery across process
death. Linux and Windows compilation are covered by CI; local socket
tests run on macOS.

## Model Used

OpenAI Codex with tool use and code execution. GPT 6.1 Sol with High
effort handles the parallel recovery work; this isolated channel change
is implemented by the coordinating Codex agent.

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have searched GitHub for duplicate or related PRs and linked
them above
- [x] I have either (a) linked existing issues with `Fixes: #` / `Closes
#` / `Refs #` OR (b) described the issue in-PR following the relevant
issue template
- [x] I have not referenced internal/instance-local Paperclip issues or
links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip`
URLs)
- [x] My branch name describes the change (e.g. `docs/...`, `fix/...`)
and contains no internal Paperclip ticket id or instance-derived details
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [x] All Paperclip CI gates are green
- [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups
- [x] I will address all Greptile and reviewer comments before
requesting merge

---------

Co-authored-by: Paperclip <noreply@paperclip.ing>
canary/v2026.1105.0-canary.0
2026-11-04 15:56:01 -08:00
DottaandPaperclip 818d2bb661 fix(native): preserve closed post-result failure diagnostics (#19126)
## Thinking Path

> - Paperclip manages AI agents and their work.
> - Native execution persists a result before it completes cleanup and
workspace export.
> - A later execution error enters the failure-write path.
> - That write must reject an already selected result. The existing code
reports lease loss for every rejected write.
> - This can hide the category of the first error even when the same
controller still owns an unexpired lease.
> - This change adds closed diagnostic labels after exact ownership and
accepted-result checks. It keeps the existing control error and recovery
policy.

## Linked Issues or Issue Description

**What happened?**

A local real-PostgreSQL regression accepts a result through the
production control plane, then injects a harmless filesystem failure.
The production executor reports `native_session_lease_lost`. It loses
the original failure category because the failure transition requires a
null result ID.

**Expected behavior**

Keep the result guard and the existing lifecycle classification. Record
a closed diagnostic category when the selected result is accepted and
the controller still has exact, unexpired authority. Keep ordinary
lease-loss fencing when that proof is absent or its diagnostic lock is
busy.

**Steps to reproduce**

Run the new post-result cases in
`server/src/services/heartbeat/runtime-execution.test.ts`. They use the
real executor, control-plane result commit, heartbeat recovery path and
PostgreSQL. The provider boundary is controlled. No live provider is
used.

**Paperclip version or commit**

The regression fails on base `7d1e9b3477`. Related open PR #16917
changes legacy lease recovery. Open #19063 adds terminal finalizer
reasons, and #15310 preserves database finalization errors. They do not
change this executor diagnostic branch. This change only adds native
diagnostic evidence and does not reclaim a lease.

## What Changed

- Add a typed diagnostic with a closed stage, category and
accepted-result flag. Do not retain the source message, path, arbitrary
code or lease token.
- After a rejected failure write, check the selected accepted result and
the exact company, task, run, owner, attempt, generation, process
identity and expiry. Use a coordinator-only `NOWAIT` lock. Fall back to
the original control error if the diagnostic read fails.
- Report the closed event after rollback. Keep
`native_session_lease_lost` as the error message and leave every
failure-write predicate unchanged.
- Add real-PostgreSQL safety cases for stale and expired authority,
owner replacement, Stop state, result selection, pending accounting, one
provider invocation, closed labels and diagnostic sink failure.
- Document the closed event, unchanged authority, and possible late
diagnostic sink completion.
- Add a competing-row-lock barrier. It verifies actual PostgreSQL lock
refusal and control settlement before the competing lock is released.

## Verification

- Permanent regression on unchanged base: RED because the closed
diagnostic is absent.
- NOWAIT mutation: RED when only NOWAIT is removed. PostgreSQL reports
lock timeout instead of immediate lock refusal. The test uses barriers
and the actual database error, with no elapsed-time assertion.
- Final related suites: 56 tests passed across runtime execution and
provider failure integration tests.
- Full server source and test typecheck: passed.
- Full `pnpm -r typecheck`: passed in an independent locked-dependency
checkout.
- Full `pnpm build`: passed.
- Full `pnpm test:run`: running in the independent immutable checkout.
All six chat shards passed; the remaining suites are still pending.
- The first current-head CI attempt failed in two cases: workspace
runtime initial fixture HTTP readiness and instructions-bundle
error-message rendering. Both exact cases passed in isolation on
unchanged PR head and base. The original causes remain unknown after
bounded test-only observation. One controlled same-head rerun of each
failed job passed. Current required CI and all other completed checks
passed. Original failures remain recorded; no infrastructure or
flaky-test claim is made.
- Module boundary check and `git diff --check`: passed.
- Exact-head Greptile: 5/5 with no actionable findings or open review
threads. Automatic native review remains queued. That advisory check is
not required by current master rules; no current-head native assessment
is claimed.
- Earlier fixture setup failures remain recorded. These included missing
fixture fields and observing the Drizzle wrapper instead of its
PostgreSQL cause. They are not the regression RED. An earlier broad
typecheck was interrupted for the required NOWAIT revision; the final
full typecheck passed.
- No hosted export recovery or original hosted failure cause is claimed.

## Risks

The extra read is diagnostic only. It uses NOWAIT and cannot wait for a
competing coordinator lock. Its failure preserves the existing control
classification. The event sink uses the existing 60-second
execution-control bound. A slow sink can finish later and emit a late
event. Result selection, Stop, accounting, retry eligibility and
provider work do not depend on event success. No schema or lifecycle
contract changes are required.

## Model Used

OpenAI GPT-6.1, model ID `gpt-6.1-sol`, with reasoning, tool use and
code execution. The host did not expose the context-window size.

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have searched GitHub for duplicate or related PRs and linked
them above
- [x] I have either (a) linked existing issues with `Fixes: #` / `Closes
#` / `Refs #` OR (b) described the issue in-PR following the relevant
issue template
- [x] I have not referenced internal/instance-local Paperclip issues or
links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip`
URLs)
- [x] My branch name describes the change (e.g. `docs/...`, `fix/...`)
and contains no internal Paperclip ticket id or instance-derived details
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [x] All Paperclip CI gates are green
- [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups
- [ ] I will address all Greptile and reviewer comments before
requesting merge

Co-authored-by: Paperclip <noreply@paperclip.ing>
2026-11-04 17:45:53 -06:00
DottaandClaude Opus 5.5 0e27369fa4 fix(native): restart sandbox prep interrupted before its sync descriptor (#19054)
## Thinking Path

> - Paperclip is the open source app people use to manage AI agents for
work
> - Native runs on sandbox environments sync the host workspace into the
sandbox before the provider starts
> - Runtime selection writes the native execution input first. It writes
the workspace sync reference only after the sandbox is seeded, and
before any provider dispatch
> - A server restart between those two writes leaves a run with an input
but no sync reference
> - Restart recovery then fails the run during workspace preparation
with `native_workspace_sync_descriptor_binding_missing`, although the
sandbox never received any work from that run
> - This pull request lets recovery re-admit the host workspace in that
state, so sync preparation starts fresh on the same run
> - The benefit is that a deploy or restart during sandbox preparation
no longer turns queued work into a terminal `setup_failed` run

## Linked Issues or Issue Description

**What happened?**
After a server restart, six native sandbox runs failed with
`setup_failed` and the error
`native_workspace_sync_descriptor_binding_missing`. Each run timeline
shows the same order: run started, `snapshot.git`, `snapshot.baseline`,
then "Server shutdown suspended native controller ownership", then a
restart recovery claim ("Restarting an incomplete native runner
bootstrap" or "Resuming the durable native provider session"), then the
error. No run had a `nativeWorkspaceSync` reference. Each run had a
persisted `nativeExecutionInput`.

**Expected behavior**
When sandbox sync preparation did not finish, restart recovery prepares
the sandbox workspace again from the host workspace and continues the
run.

**Steps to reproduce**
1. Start a native run on a sandbox environment.
2. Restart the server after runtime selection persists
`nativeExecutionInput` but before `prepareNativeWorkspaceSync` persists
its reference.
3. Restart recovery re-enters workspace preparation and fails with
`native_workspace_sync_descriptor_binding_missing`.

**Paperclip version or commit**
Reproduced on `master` at be20d4ad97.

**Relevant logs or output**
`native_workspace_sync_descriptor_binding_missing` thrown from
`server/src/services/heartbeat/workspace-preparation.ts`.

Related: #17838 (preparation recovery ownership). No open PR covers this
guard.

## What Changed

- `server/src/services/heartbeat/workspace-preparation.ts`: remove the
guard that failed sandbox recovery when the run has no workspace sync
reference. The existing fallback admits `executionWorkspace.cwd`, which
is the same host directory that `prepareNativeWorkspaceSync` then uses
as `workspaceLocalDir`. A comment records the ordering invariant that
makes this safe.
- `server/src/services/heartbeat/workspace-preparation.test.ts`: the
Daytona "absent descriptor" recovery case now expects preparation to
succeed and to re-admit the host workspace. The "corrupt descriptor"
case still fails closed with
`native_workspace_sync_descriptor_digest_mismatch`.

## Verification

- Red before the fix: `npx vitest run
src/services/heartbeat/workspace-preparation.test.ts -t "validates the
admitted host binding"` (from `server/`) failed for "daytona recovery
with absent descriptor" with
`native_workspace_sync_descriptor_binding_missing`, the same error as
the failed runs.
- Green after the fix: the full
`src/services/heartbeat/workspace-preparation.test.ts` file passes,
including the local, ssh, runner-task, valid-descriptor and
corrupt-descriptor recovery cases.
- Ordering check (code read): `runtime-selection.ts` persists
`nativeExecutionInput` in the selection transaction, then calls
`prepareNativeWorkspaceSync`, which persists the reference as its last
step. `heartbeat.ts` calls `executeHeartbeatRuntime` only after runtime
selection returns. No code path removes `nativeWorkspaceSync` from
`runnerProfileJson`.
- Not run: a live restart on a sandbox environment. The original staging
runs are not recovered by this PR.

## Risks

- Low risk. The change only affects native recovery on sandbox targets
(not runner-task, ssh, remote-authority or controller-only runs) when
the sync reference is absent.
- A present but invalid descriptor still fails closed.
- If a future change dispatches a provider before the sync reference is
persisted, this path would re-seed over remote work. The comment at the
call site records that invariant.

## Model Used

- Claude Opus 5.5 (`claude-opus-5-5`), via Claude Code with tool use
(shell, file edits, browser reads of run records).

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have searched GitHub for duplicate or related PRs and linked
them above
- [x] I have either (a) linked existing issues with `Fixes: #` / `Closes
#` / `Refs #` OR (b) described the issue in-PR following the relevant
issue template
- [x] I have not referenced internal/instance-local Paperclip issues or
links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip`
URLs)
- [x] My branch name describes the change (e.g. `docs/...`, `fix/...`)
and contains no internal Paperclip ticket id or instance-derived details
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [ ] All Paperclip CI gates are green
- [ ] Greptile is 5/5 with no open P2s, recommendations, or follow-ups
- [x] I will address all Greptile and reviewer comments before
requesting merge

🤖 Generated with [Claude Code](https://claude.com/claude-code)

Co-authored-by: Claude Opus 5.5 <noreply@anthropic.com>
2026-11-04 17:45:00 -06:00
DottaandClaude Opus 5.5 ac57b183f0 fix(evals): run campaign cells when TestOps selection is skipped (#19053)
## Thinking Path

> - Paperclip is the open source app people use to manage AI agents for
work
> - The Runner Full-Stack E2E workflow runs the paid Product E2E cells,
including the Product regression TestOps plan
> - #18983 added an optional `testops_selection` job and made `catalog`
depend on it
> - That job is skipped in every ordinary manual or scheduled campaign
> - GitHub's implicit `success()` also fails when an ancestor job was
skipped, so every job below `catalog` was skipped
> - Since #18983 merged, ordinary campaigns run no cells: the merge
reports every selected cell as "No result artifact was uploaded"
> - This pull request gives each job below `catalog` an explicit status
condition
> - The benefit is that ordinary, nightly and branch-targeted campaigns
run their cells again, and TestOps campaigns are unchanged

## Linked Issues or Issue Description

Refs #18983, #19000

**What happened?**
Run https://github.com/paperclipai/paperclip/actions/runs/41914430034
selected 20 Product regression cells with the `id` input. `catalog`
passed. `daytona_image`, `build_runner_artifacts`,
`build_remote_provider_pack` and every matrix job were skipped. The
merge failed with 20 "No result artifact was uploaded" rows.

**Expected behavior**
An ordinary manual campaign runs its selected cells when
`testops_selection` is skipped, as it did before #18983.

**Steps to reproduce**
Dispatch `runner-full-stack-e2e.yml` on `master` without `testops_case`
or `ALLURE_JOB_RUN_ID`. The scheduled daily campaign has the same path.

## What Changed

- `daytona_image`, `build_runner_artifacts`,
`build_remote_provider_pack`, `test`, `test_recurring` and
`test_manual_private` now start with `!cancelled()`.
- Each of those jobs now requires `needs.<job>.result == 'success'` for
each of its real dependencies. A failed or skipped build still skips the
cells, as before. The existing schedule, cadence and evidence-route
conditions are unchanged.
- A new regression test parses the workflow. It requires every job below
`testops_selection` to use a status function and to require each real
dependency result.

## Verification

- `node --test tests/runner-e2e/product-regression-testops.test.mjs`:
15/15 pass.
- Negative control: the new test fails against the current `master`
workflow.
- `daytona-image.test.ts`, `workflow-target.test.ts` and
`workflow-timeout.test.ts` pass. `workflow-security.test.ts` has 5
failures. The same 5 fail on unchanged `master` (they concern
`pr-trusted.yml` and `chat-catalog-testops-case.yml`).
- A workflow change takes effect only from `master`, because paid
campaigns run only from the default branch. After merge, dispatch an
ordinary `id=` campaign and confirm the cells run.

## Risks

- Low risk. The conditions keep the previous failure propagation: a job
runs only when each direct dependency succeeded and the run is not
cancelled.
- `catalog` success already implies `authorize` and `target_lock`
success, so those are not repeated.

## Model Used

- Claude Opus 5.5 (`claude-opus-5-5`), via Claude Code with tool use and
code execution.

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have searched GitHub for duplicate or related PRs and linked
them above
- [x] I have either (a) linked existing issues with `Fixes: #` / `Closes
#` / `Refs #` OR (b) described the issue in-PR following the relevant
issue template
- [x] I have not referenced internal/instance-local Paperclip issues or
links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip`
URLs)
- [x] My branch name describes the change (e.g. `docs/...`, `fix/...`)
and contains no internal Paperclip ticket id or instance-derived details
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [x] All Paperclip CI gates are green
- [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups
- [x] I will address all Greptile and reviewer comments before
requesting merge

🤖 Generated with [Claude Code](https://claude.com/claude-code)

Co-authored-by: Claude Opus 5.5 <noreply@anthropic.com>
2026-11-04 17:41:18 -06:00
DottaandClaude Opus 5.5 23cd123ff8 fix(e2e): retain the closed cause code of a journey cleanup failure (#19079)
## Thinking Path

> - Paperclip is the open source app people use to manage AI agents for
work
> - The Product E2E journey harness runs the QA staging smoke plan and
reports each case to TestOps
> - Each case runs a journey, then releases its owned target resources
(cleanup)
> - Three recent cleanup failures had a passed journey and all checks
passed, but each result only says `target_cleanup_failed`
> - The adapter throws an error with a closed identifier code, and the
harness discards that code, so no one can find the failing cleanup step
> - This pull request keeps the identifier-shaped cause code as an extra
cleanup phase
> - The benefit is that the next cleanup failure is diagnosable from
TestOps without private runner files

## Linked Issues or Issue Description

**What happened?**
QA staging smoke cleanup failures show only `target_cleanup_failed`.
This occurred for `question-answer-resume` (launch 2390), and for
`company-access-isolation` and `create-skill-studio` (launch 2693). In
each case, the journey and all behavioral checks passed. The private
runner report is deleted with the runner, and the adapter error code is
not kept in the retained result. The cause is not known.

**Expected behavior**
A cleanup failure keeps a closed, identifier-shaped cause code (for
example `fixture_cleanup_not_confirmed`). The result never keeps the raw
error message.

**Steps to reproduce**
1. Run a Product E2E journey with a target session whose `release()`
throws an error that has a `code` property.
2. Read `normalized-results.json`.
3. Before this change, the cleanup phase only contains
`target_cleanup_failed`.

**Paperclip version or commit**
master at c99bcd89fe.

## What Changed

- `tests/runner-e2e/product-journeys/launch.ts`: when target release or
stop-only recovery fails, also record `cause.<code>` as a failed cleanup
phase. The code must match `^[A-Za-z][A-Za-z0-9_]{1,79}$`. Other values
are ignored. Timeouts keep their existing codes. `result.error` stays
`target_cleanup_failed`.
- `tests/runner-e2e/product-journeys/campaign.test.ts`: add a regression
test. It checks that an identifier code is kept, that the raw message is
not kept, and that a free-form code is not kept.

## Verification

- `npx vitest run --config tests/runner-e2e/vitest.config.ts
tests/runner-e2e/product-journeys`: 46 files, 1235 tests passed.
- Negative control: with the old `launch.ts`, the new test fails. With
the change, it passes.
- `tsc -p tests/runner-e2e/tsconfig.json` shows no errors in the changed
files. (This worktree has unbuilt workspace packages, so other unrelated
errors appear.)
- The Paperclip Cloud TestOps exporter already publishes phase codes
that match its closed code pattern as step messages. A `cause.*` code
matches that pattern.
- Not verified live: QA staging smoke uses a pinned harness revision
(`QA_SMOKE_HARNESS_SHA`). The new phase appears in TestOps only after
the pin moves to a revision that contains this change.

## Risks

- Low risk. The change only adds a phase entry when cleanup already
failed. Pass and fail grading does not change.
- An adapter could put private data into an error `code`. The strict
identifier pattern limits this to short identifier strings.
- Report consumers that count cleanup phases see one more failed cleanup
phase.

## Model Used

- Claude Opus 5.5 (`claude-opus-5-5`), Anthropic, via Claude Code with
tool use (shell, browser, code editing). Extended reasoning was used.

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have searched GitHub for duplicate or related PRs and linked
them above
- [x] I have either (a) linked existing issues with `Fixes: #` / `Closes
#` / `Refs #` OR (b) described the issue in-PR following the relevant
issue template
- [x] I have not referenced internal/instance-local Paperclip issues or
links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip`
URLs)
- [x] My branch name describes the change (e.g. `docs/...`, `fix/...`)
and contains no internal Paperclip ticket id or instance-derived details
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [ ] All Paperclip CI gates are green
- [ ] Greptile is 5/5 with no open P2s, recommendations, or follow-ups
- [x] I will address all Greptile and reviewer comments before
requesting merge

🤖 Generated with [Claude Code](https://claude.com/claude-code)

---------

Co-authored-by: Claude Opus 5.5 <noreply@anthropic.com>
2026-11-04 17:41:03 -06:00
DottaandClaude Opus 5.5 b1a71044af fix(evals): observe chat handoff replies and restarted task pages (#19073)
## Thinking Path

> - Paperclip is the open source app people use to manage AI agents for
work
> - The Product regression TestOps plan runs 20 Product E2E cells
through `runner-full-stack-e2e.yml`
> - The full 20-case TestOps launch on `master` 4740d251 passed 13 of 20
> - Four failures came from the eval's observation, not from the product
> - Three Agent Chat handoff cases raced the product's completed-handoff
reply turn, and the run-count contract treated that reply as an
unexpected run
> - One continuation case waited for `DOMContentLoaded` after a server
restart, which the dev server can leave pending while the page is
interactive
> - This pull request makes the eval observe those two behaviors
explicitly
> - The benefit is that these cases measure the product again, and the
handoff cases now also prove that the result returns to the chat

## Linked Issues or Issue Description

Refs #14408, #19053

**What happened?**
TestOps launch https://paperclip.testops.cloud/launch/2694 (GitHub run
https://github.com/paperclipai/paperclip/actions/runs/41915965118)
failed these cells:
- `agent-chat` `multi-repository`, `clarify-reuse`, `plan-handoff`:
"Declared total provider-run bounds". Each final run ledger has exactly
one extra run. That run is the source chat's `chat_task_completed` turn,
with `chatCompletionUpdates` naming the finished task.
- `continuation` `completed-action-resume`: `page.goto: Timeout 30000ms
exceeded` waiting for `domcontentloaded` right after the deliberate
server restart. The server log shows the page loaded and called the API
during that wait.

**Expected behavior**
A completed handoff returns to the source chat (#14408). The eval must
observe that reply, require it, and count it. After a restart, the eval
must wait for the rendered task, not for a browser load event.

**Steps to reproduce**
Run the cells listed above on `master` with the Product regression
TestOps lane.

## What Changed

- `chat-flow.ts`: after the delegated task is `done`, the handoff branch
waits for the source chat's completion-reply turn
(`chat_task_completed`, correlated by `chatCompletionUpdates[].id`). It
requires exactly one such turn, `succeeded`, and exactly one agent
comment created by that turn.
- `chat-cases.ts`: the declared run counts include that one reply turn:
`multi-repository` 2 → 3, `clarify-reuse` 3 → 4, `plan-handoff` 4 → 5.
The minimum and maximum stay equal, so a missing reply or an extra run
still fails.
- `catalog.test.ts`: the catalog run-count total changes from 385 to 397
for these three cases across their profiles.
- `continuation-flow.ts`: `open()` uses `waitUntil: "commit"` with a 60
s navigation limit, then requires the rendered task thread
(`waitForTaskChatRendered`). This matches the existing restart handling
in `chat-flow.ts`.

## Verification

- `npx vitest run --config tests/runner-e2e/vitest.config.ts
tests/runner-e2e/chat-flow.test.ts tests/runner-e2e/continuation.test.ts
tests/runner-e2e/catalog.test.ts
tests/runner-e2e/kimi-qualification.test.ts
tests/runner-e2e/non-execution-wake.test.ts
tests/runner-e2e/product-regression-testops-catalog.test.ts
tests/runner-e2e/lifecycle-live.test.ts`: all pass.
- `tsc -p tests/runner-e2e/tsconfig.json`: no errors in
`tests/runner-e2e`.
- The retained ledgers from run 41915965118 show the reply turn:
`multi-repository` 3 runs, `clarify-reuse` 4 runs, `plan-handoff` 5
runs, each with one `chat_task_completed` run on the chat issue.
- Live single-case TestOps runs against this branch: see the PR
comments.

## Risks

- Changed eval conditions: the three handoff cases now also require the
completion reply. A product regression that drops the reply now fails
these cases, as intended.
- The continuation navigation allowance changes from 30 s
(`domcontentloaded`) to 60 s (`commit`) plus a rendered-thread check.
That is an observation deadline, not a product latency requirement. The
rendered-thread check is stronger than the old load event.
- Three other plan failures are not changed here. They are product
failures: the agent creates `human_only` confirmations, and
`resolve-from-comment` then refuses to record the user's explicit text
approval (`interaction_human_only`).

## Model Used

- Claude Opus 5.5 (`claude-opus-5-5`), via Claude Code with tool use and
code execution.

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have searched GitHub for duplicate or related PRs and linked
them above
- [x] I have either (a) linked existing issues with `Fixes: #` / `Closes
#` / `Refs #` OR (b) described the issue in-PR following the relevant
issue template
- [x] I have not referenced internal/instance-local Paperclip issues or
links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip`
URLs)
- [x] My branch name describes the change (e.g. `docs/...`, `fix/...`)
and contains no internal Paperclip ticket id or instance-derived details
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [ ] All Paperclip CI gates are green
- [ ] Greptile is 5/5 with no open P2s, recommendations, or follow-ups
- [x] I will address all Greptile and reviewer comments before
requesting merge

🤖 Generated with [Claude Code](https://claude.com/claude-code)

---------

Co-authored-by: Claude Opus 5.5 <noreply@anthropic.com>
2026-11-04 17:40:58 -06:00
2ccc7d37ef feat(ui): retain approved reads across outage reloads (#18825)
## Thinking Path

> - Paperclip lets people manage agent work through the board.
> - The board already retains loaded reads during a temporary server
failure.
> - Reloading the page removes that in-memory data.
> - A deploy can then leave a returning user without the shell or recent
tasks.
> - This pull request saves an explicit, limited set of reads in the
browser.
> - Cached identity supports display while fresh session checks protect
writes.

## Linked Issues or Issue Description

**What happened?**
A reload during an API outage loses the board's loaded reads. An
automatic worker update can also reload a hidden tab while a write is
pending.

**Expected behavior**
Show the cached shell and recent tasks during a temporary outage. Limit
saved content by user, company, age and build. Clear it on sign-out.
Wait for a fresh session before sending account-bound writes. Defer
automatic reloads while work is pending.

**Steps to reproduce**
Open a task and settings while online. Return 503 from the API and
reload. Restore the API. Sign out and confirm that saved query records
are gone. Discover a worker update while offline or during an autosave
and confirm that it waits.

Stacked on Refs #18822. Related durable-write foundation: Refs #17960.
The outage browser suite follows in a separate test PR.

## What Changed

- Persist an exact read allowlist through TanStack Query dehydration and
hydration. Save shell preferences, company/sidebar data, agent/project
lists, plugin UI metadata, the first inbox page, and 20 recent tasks.
Task UUID and identifier reads share one recent-task slot.
- Namespace records by user and company. Retain eligible reads across
normal memory garbage collection, expire each read after 24 hours, and
discard them after a build change. Unstamped builds disable hydration
and persistence while retaining sign-out cleanup. Use the existing
instance-wide plugin contribution query in the user's root record.
- Exclude session credentials and bootstrap data, embedded plan
documents, comments, preview work products, provider credentials and
environment values, browser capabilities, pairing data, other queries,
and mutations. Restore only display identity from session data. Preserve
safe agent provider/model display fields and configuration object
shapes. Apply the projection on save and restore.
- Clear saved reads on sign-out, cross-tab account changes, and
definitive session denial. Keep revocation working on plain HTTP without
crypto.randomUUID. Use per-user revocation revisions to reject delayed
writes and stale records. Preserve a newer account. Remove every
UUID/identifier projection and nested inbox copy of a denied task.
- Detach shared GETs when the account changes or signs out. Load
complete, freshly authorized agents before opening bulk settings from a
display-only roster. Retire a pending bulk-editor result or error when
row, select-all or clear changes the selection, including a
clear/reselect of the same agent.
- Require a fresh server lookup before account-bound writes, pending
task creation, or mounted autosaves resume. This includes automatic task
read receipts, inbox archives, workspace preferences and primary-agent
choices, with optimistic archive changes gated too. Cancel the old write
scope when the verified user changes. Release completed archives through
account-independent cleanup without restoring old cached rows; an old
operation cannot clear a newer hide flag. Retry unconfirmed read
receipts after a fresh session succeeds for the original account, and
remember confirmed receipts across refreshes. Track pending reads per
task so opening another task sends its receipt immediately; revisiting
reuses an outstanding receipt and its original account scope.
- Defer a hidden-tab worker reload until connectivity, mutations,
durable sends, and autosaves are safe. Synchronously count each
unresolved operation across online rate-limit retries. Release a
cancelled target’s unused dirty token when an editor changes tasks; keep
stored drafts, admitted saves and queued retries. Cover autosave
debounce, newer edits, navigation and undo.

## Verification

- Current head `fe4f682c879` is merge-ready: all 54 check runs completed
(52 successful, one skipped, one neutral), the legacy Snyk status is
successful, and both `ci / verify` and `ci / e2e` pass in run
`41752927822`. Greptile Apex reviewed this exact head at 5/5 with zero
unresolved threads; the branch has no merge conflicts. All three PRs now
meet the merge-ready bar; the stack remains unmerged pending operator
approval.
- Greptile Apex reviewed exact current head `fe4f682c879` at 5/5 with no
actionable findings and zero unresolved threads (summary updated
2026-11-04 at 01:24:40 UTC). Both settings-account and pending-selection
findings are fixed, replied to and resolved. The branch has no merge
conflicts. Current-head CI now passes in run `41752927822`.
- Seventeen new cases cover settings restored from actual saved query
records, matching/changed/signed-out identities, denied verification,
late crown responses without overwriting newer reads, and bulk-selection
changes during successful/failed reads. Sixteen fail the preceding
source and one preserves denial compatibility. Both settings paths reuse
the existing account-bound mutation guard; its optional explicit
QueryClient supports the workspace hook’s existing detached-host mode.
Primary-agent optimistic updates begin only after verification and
cleanup checks ownership and the cache revision.
- Earlier CI run `41749456480` on prior head `2cf7516f18c` has one real
server test failure: the owned-runtime case in
`idle-completed-history.test.ts` could not reach its HTTP child on port
34757 within 10 seconds (99 refused probes). Its other 1,829 cases pass
and three skip; the only other unsuccessful job is the downstream
`verify` gate. The exact selected case passes locally, and the entire
75-case file passes in 72.19 seconds on the exact `2cf7516f18c` source
tree with isolated PostgreSQL and a real child process on macOS
arm64/Node 25.6.1. The Linux CI startup cause remains unknown; these
local results are not a fix or CI acceptance. One failed-jobs retry with
debug logging was accepted on that unchanged head, then superseded by
the later settings fixes. Current-head CI remains required; no source
change was made for this failure.
- Current cache head `fe4f682c879`, based on read head `09d1db29dea` and
master `683fa4725e9`, passes all 1,198 focused tests across twenty-eight
files, UI typecheck, token gates and the enforcing query-error guard.
Dependent browser head `228c1b68d30` contains this exact application
source and passes standalone strict checking of all three browser specs.
Current-head CI now passes in run `41752927822`.
- Three new navigation regressions fail the preceding application source
and pass with the fix. They open three cached tasks before any receipt
resolves, leave the page before success or failure, revisit an
outstanding read without duplicating it, and recover an older failed
receipt after a fresh session succeeds while a later task remains
pending.
- The fixture repair passes all seven deadline integration cases and the
complete server typecheck, including the server test layer. The old
assertion deterministically fails at 23:59:06.888 UTC; its
one-second-old run also fails the first-second-of-day probe. The
corrected fixture passes noon and both midnight probes. The permanent
three-case coverage uses seeded 2099 clocks.
- Nine new cases cover archive success/failure after sign-out and
another account takes over, both mounted and unmounted; cleanup
ownership when a newer archive uses the same task; session-check 429
exhaustion followed by matching, changed or signed-out identity; and a
failed read receipt followed by a new session read. They verify no
old-cache restoration, toast or navigation, retained newer hide flags,
no failed-check loop and no duplicate confirmed receipt. Seven fail the
previous implementation; two compatibility cases retain account-change
suppression. Initial test error-constructor and query-notification
timing assumptions were corrected before the passing checks.
- The inherited skills/app error-priority fix passes all 60 affected
tests and UI typecheck on both application branches. Its twelve new
regression cases fail the preceding read implementation. The
persisted-cache suite includes 48 cases.
- Six new regressions fail against the preceding application source and
pass with the fix. Actual worker-update and mutation-cache listeners
cannot reload a hidden tab between online 429 retries; the original
create key survives, and the update reloads once after a receipt. Real
self-hosted and Cloud sign-out work without crypto.randomUUID, with
stamped and unstamped builds. Saved reads are removed and account write
scopes are invalidated. An initial test-fixture type annotation error
was corrected before the passing typecheck.
- The 48 cache tests cover actual five-minute memory GC, the 20-task
bound across saved and live reads, original 24-hour expiry, denial
before session verification, unstamped cleanup, cross-tab revocation and
delayed flushes. Private GETs cannot cross account transitions. Bulk
edits require complete current agent data. Undo releases the update
blocker while preserving the Saved indicator.
- All 23 built-UI outage/write/loading cases pass in 4.5 minutes on
exact integrated head `228c1b68d30`, containing current cache revision
`fe4f682c879`: ten outage, six durable-write and seven loading cases.
The run uses bundled Chromium, the built UI, a fresh local-trusted
server and isolated embedded PostgreSQL on macOS arm64/Node 25.6.1. All
three specs pass standalone strict TypeScript checking. Owned temporary
server and database stopped.
- Earlier browser runs exposed and fixed cached-header, native Storage
cleanup and replay/session defects. A prior run passed 21/22 because
real WebSockets contradicted the simulated HTTP outage; the fixture now
closes existing socket pairs and holds new sockets through the same
outage deadline. An older CI run exposed a disposed response in the
Inbox route callback; pre-navigation snapshots remove that lifetime, and
the current full run includes that repair. Earlier failures and their
diagnosis remain in the discussion. The current full run passes. Broader
historical workspace failures remain documented in Refs #18822; this
does not claim a clean full workspace suite.
- Current-head CI passes on `fe4f682c879`. Controlled local outages do
not complete hosted authentication or a real Cloud restart/deploy
acceptance.

Commands for the current cache change and inherited read fix (the
current focused run also includes src/lib/inboxArchiveCache.test.ts and
src/pages/Inbox.test.ts):

```sh
pnpm --filter @paperclipai/ui exec vitest run src/pages/CompanySkills.test.tsx src/pages/apps/AppNotConnected.test.tsx
pnpm --filter @paperclipai/ui exec vitest run src/hooks/useDurableSubmit.test.tsx src/hooks/useDurableAutosave.test.tsx src/hooks/useSignOut.test.tsx src/lib/persisted-query-cache.test.ts src/lib/service-worker-updates.test.ts src/lib/service-worker-cache-policy.test.ts src/lib/pending-send.test.ts src/lib/issue-execution-policy.test.ts src/components/InlineEditor.test.tsx src/components/MarkdownEditor.test.tsx src/components/NewIssueDialog.test.tsx
pnpm --filter @paperclipai/ui exec vitest run src/components/agents/AgentBulkRoster.test.tsx src/components/agents/AgentBulkSettingsSheet.test.tsx src/hooks/useAccountBoundMutation.test.tsx src/pages/IssueDetail.test.tsx src/components/TaskChatThread.test.tsx src/components/TaskChatThread.task-creation-order.test.tsx src/api/client.test.ts src/api/agents.test.ts
pnpm --filter @paperclipai/ui exec vitest run src/hooks/useCoordinatorWorkspaceEnabled.test.tsx src/context/PrimaryAgentProvider.test.tsx src/components/CoordinatorWorkspaceSetting.test.tsx src/components/primary-agent/PrimaryAgentPresentation.test.tsx src/components/MobileBottomNav.coordinator.test.tsx src/components/CoordinatorSidebar.test.tsx src/pages/Issues.coordinator-routing.test.tsx
pnpm --filter @paperclipai/ui typecheck
pnpm check:token-gates
node scripts/check-query-error-rendering.mjs --enforce --summary
```

## Risks

This deliberately saves task content on the local browser for up to 24
hours. The allowlist excludes credentials and ephemeral capabilities.
Local storage can be disabled or full; persistence then fails without
blocking the app. Restored data can be stale and never grants server
access. A user or access change clears cached account reads and
invalidates pending writes. The browser outage suite and real hosted
deploy acceptance remain release requirements. There are no migrations
or new dependencies.

## Model Used

OpenAI `gpt-6.1-sol` through Codex, with xhigh reasoning effort, tool
use, and code execution. The context window size is not exposed.

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have searched GitHub for duplicate or related PRs and linked
them above
- [x] I have described the issue in-PR following the bug report template
- [x] I have not referenced internal/instance-local Paperclip issues or
links
- [x] My branch name describes the change and contains no internal
ticket id
- [x] The focused local tests for this change pass
- [x] I have added tests and updated relevant documentation
- [x] I have considered and documented risks above
- [x] All Paperclip CI gates are green
- [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups
- [x] I will address all Greptile and reviewer comments before
requesting merge

---------

Co-authored-by: devinfoley <139239+devinfoley@users.noreply.github.com>
Co-authored-by: Paperclip <noreply@paperclip.ing>
Co-authored-by: Bender (Fable) <bender@agents.paperclip.ing>
Co-authored-by: Claude Fable 5.1 <noreply@anthropic.com>
2026-11-04 15:40:30 -08:00
35d086213e fix(native): explain failed accepted results on the run (#19091)
## Thinking Path

> - Paperclip is the open source app people use to manage AI agents for
work.
> - A native run ends when the server projects the accepted result onto
the run row.
> - Operators read `errorCode` and `error` on a failed run to learn why
it failed.
> - Three native writers can set a run to `failed` without these fields.
#19063 repairs the finalizer retry-exhaustion writer.
> - The two result-projection writers still set `failed` with no cause
when the provider failure is not classified.
> - This pull request makes both projection writers record a cause when
they project `failed`.
> - The benefit is that, with #19063, no native writer can leave a
failed run unexplained.

## Linked Issues or Issue Description

Refs #19063.

**What happened?**

A staging soak found 11 failed native runs with `errorCode` null and
`error` null. In each run the provider turn succeeded. Workspace
copy-back then failed three times, and the finalizer retry-exhaustion
path set the run to `failed`. #19063 fixes that writer. An audit of
every `heartbeat_runs` status writer found two more writers with the
same defect. `finalizeNativeRun` and `projectCommittedRun` project an
accepted result with `runTerminalState: "failed"`. They write the error
fields only when a classified provider failure exists.

**Expected behavior**

A run with status `failed` always has an `errorCode` and an `error`. A
cause that is already recorded stays.

**Steps to reproduce**

1. Accept a native result with `runTerminalState: "failed"` and no
`turn.failed` event.
2. Call `finalizeNativeRun` with `projectRunStatus: true`, or project
the committed run through `projectCommittedRun`.
3. Read the run. On master its status is `failed`, and its `errorCode`
and `error` are null.

## What Changed

- Add `explainFailedRun` in
`server/src/services/native-runtime/native-run-failure-explanation.ts`.
It builds SQL SET expressions. They keep a non-empty existing
`errorCode` or `error`. Otherwise they write `native_run_failed` and a
readable message. By default the expressions leave a run that is already
`cancelled` unchanged, as the status writers do.
- `finalizeNativeRun` uses the helper when it projects `failed`. The
existing provider-failure and recovered-failure values remain the
preferred causes.
- `projectCommittedRun` uses the helper for a `failed` accepted result.
This writer sets status unconditionally, so it does not use the
cancelled branch.
- Writer audit: all legacy and heartbeat callers of `setRunStatus*` that
pass `failed` already set both fields. The other direct native writers
also set both fields.

## Verification

- Red, with the source change stashed: 3 new cases failed with
`errorCode: null`. These were the finalizer projection, recovery
projection with no cause, and recovery projection with an empty error.
The control case with a recorded cause passed.
- Green: `npx vitest run
src/__tests__/native-run-projection-work.test.ts
src/services/native-runtime/native-run-finalizer-telemetry.test.ts
src/__tests__/native-status-arbiter-corpus.test.ts` (225 passed).
- Wider run: all `server/src/__tests__/native-*.test.ts` and
`server/src/services/native-runtime/*.test.ts` (7416 passed). Two
failures come from the local environment. `plugin-runner-probe` needs
the Rust runner source. `native-ingress-bootstrap-retry` needs the
controller-host OpenCode proxy.
- This change was not exercised on staging. It changes only fields that
are written at terminal projection.

## Risks

- Low risk. The change affects only rows that are projected to `failed`.
A recorded cause is never replaced. Succeeded and cancelled projections
are unchanged.
- The staging failures need #19063 too. This PR alone does not change
their writer.
- The cause behind the staging copy-back failures is still unknown. The
sandbox command reports the redacted
`remote_workspace_operation_failed`, which also appears in a separate
signature. This PR does not change that diagnostic.

## Model Used

- Claude Opus 5.5 (`claude-opus-5-5`), Anthropic, through Claude Code
with tool use (shell, file edits, browser reads of staging run records).

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have searched GitHub for duplicate or related PRs and linked
them above
- [x] I have either (a) linked existing issues with `Fixes: #` / `Closes
#` / `Refs #` OR (b) described the issue in-PR following the relevant
issue template
- [x] I have not referenced internal/instance-local Paperclip issues or
links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip`
URLs)
- [x] My branch name describes the change (e.g. `docs/...`, `fix/...`)
and contains no internal Paperclip ticket id or instance-derived details
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [ ] All Paperclip CI gates are green
- [ ] Greptile is 5/5 with no open P2s, recommendations, or follow-ups
- [x] I will address all Greptile and reviewer comments before
requesting merge

🤖 Generated with [Claude Code](https://claude.com/claude-code)

Co-authored-by: Paperclip <noreply@paperclip.ing>
Co-authored-by: Claude Opus 5.5 <noreply@anthropic.com>
2026-11-04 17:40:05 -06:00
Saurabh Sungh 66b0aded28 fix(cli): add KillMode=mixed to generated systemd unit (#18598)
## Thinking Path

> - Paperclip is the open source app people use to manage AI agents for
work.
> - The CLI subsystem provides background service management
(`paperclipai service install`) generating systemd user units on Linux.
> - When systemctl stops or restarts the service, systemd uses default
`KillMode=control-group` and sends SIGTERM simultaneously to all cgroup
processes, including embedded PostgreSQL.
> - This races the server's clean shutdown sequence and triggers a smart
shutdown in PostgreSQL instead of a fast shutdown, leading to ungraceful
exit.
> - This pull request adds `KillMode=mixed` to the `[Service]` section
of the generated systemd unit definition.
> - The benefit is that SIGTERM is delivered only to the main server
process, allowing the server to cleanly drain and shut down embedded
PostgreSQL in order.

## Linked Issues or Issue Description

Fixes #18595

## What Changed

- Added `KillMode=mixed` to `renderSystemdUnit` under `[Service]` in
`cli/src/services/service-manager.ts`.
- Added test assertion for `KillMode=mixed` in
`cli/src/__tests__/service-manager.test.ts`.

## Verification

- Automated test: `cli/src/__tests__/service-manager.test.ts` checks
that `renderSystemdUnit` generates a unit containing `KillMode=mixed`.
- Manual verification: Checked rendered systemd unit output to ensure
valid systemd syntax and correct section placement under `[Service]`.

## Risks

- Low risk: `KillMode=mixed` only applies to systemd user services on
Linux generated via `paperclipai service install`. If the main process
fails to exit within `TimeoutStopSec` (300s), systemd sends SIGKILL to
all remaining child processes.

## Model Used

- Google Antigravity (Gemini 3.8 Flash High) with chain-of-thought
reasoning and codebase tools.

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have searched GitHub for duplicate or related PRs and linked
them above
- [x] I have either (a) linked existing issues with `Fixes: #` / `Closes
#` / `Refs #` OR (b) described the issue in-PR following the relevant
issue template
- [x] I have not referenced internal/instance-local Paperclip issues or
links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip`
URLs)
- [x] My branch name describes the change (e.g. `docs/...`, `fix/...`)
and contains no internal Paperclip ticket id or instance-derived details
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [x] All Paperclip CI gates are green
2026-11-04 17:39:54 -06:00
1a7eb70a37 fix(run-dispatch): save a redirect sent while a stopped run settles (#19122)
## Thinking Path

> - Paperclip is the open source app people use to manage AI agents for
work
> - A user can stop a running agent and then send a new message that
redirects the work
> - The stopped run keeps settling for some seconds after Stop (backup
and checkpoint persist)
> - A message sent in that window is queued as a normal run before
settlement records the workspace recovery hold
> - The dispatch gate then withholds the unstarted run, but it saved the
message only for sources with a native workspace-sync baseline
> - For other sources (remote workspace, snapshot-only) it marked the
wake `skipped`, so the message was lost and the task stayed in progress
with no run and no wake
> - This pull request saves the withheld message for any source when the
message was written after the Stop
> - The benefit is that a redirect after Stop is acted on exactly once
instead of disappearing

## Linked Issues or Issue Description

**What happened?**
After Stop, a user posted a redirect comment with resume intent. The
follow-up run was created while the stopped run was still persisting its
checkpoint. When settlement finished, the dispatch gate cancelled the
follow-up run with `execution_reconciliation_required` and an
empty-looking error ("Recovering saved work…"). The user's wake was
marked `skipped`. Nothing woke the task again. It stayed `in_progress`
with no active or queued run.

**Expected behavior**
The message sent after Stop runs exactly once after the stopped run
settles. The task never rests in progress with no run and no pending
wake.

**Steps to reproduce**
1. Start a native run whose stopped source has no native workspace-sync
baseline (for example a remote-workspace sandbox run).
2. Stop the run.
3. Post a comment with resume intent while the stopped run still
persists its checkpoint.
4. Let settlement record the workspace recovery hold.
5. Observe that the queued follow-up run is cancelled with
`execution_reconciliation_required` and its wake is `skipped`.

**Root cause**
`deferUnstartedUserComment` in
`server/src/modules/run-dispatch/adapters/postgres.ts` saved a withheld
user comment only when the stopped source had a native workspace-sync
baseline (the copyback replay case). The enqueue path saves or admits
the same message when it arrives after the hold exists. The gap was only
timing.

Refs #18332 (added the native-baseline-only deferral this PR widens).

**Paperclip version or commit**
Reproduced on `master` at e107a75755. The
touched code is unchanged on current `master`.

**Agent adapter(s) involved**
Not adapter-specific (core bug). Seen with the Paperclip runner adapter.

## What Changed

- `deferUnstartedUserComment` now saves a withheld user comment as a
`deferred_issue_execution` receipt for any stopped native source when
the latest saved comment was written after the source's Stop
(`finishedAt`).
- The native-baseline copyback path is unchanged.
- Input written before the Stop keeps the old behavior (`skipped`).
Older queued input cannot undo a Stop.
- Delivery uses the existing deferred-receipt path
(`resumeRemoteStopComments` / `resumeDeferredExecutionReceipts` →
`admitExplicitNativeContinuation` with `queuedCommentRequestId`). All
continuation gates still apply.
- New regression in `workspace-recovery.test.ts` that controls the
timing: the message is queued while the stopped run is still active,
then the hold is recorded, then the gate runs.
- The existing snapshot-only queued-reset tests asserted the dropped
message. They now assert that the message is saved and delivered once,
like the native-baseline case.

## Verification

- Red before the fix: the new test failed with the wake `status:
"skipped"`.
- Green after the fix:
- `cd server && npx vitest run src/services/workspace-recovery.test.ts`
(308 passed)
- `cd server && npx vitest run src/modules/run-dispatch
src/__tests__/heartbeat-undispatched-execution-wait.test.ts
src/__tests__/issue-queued-comments-routes.test.ts
src/services/explicit-native-continuation.test.ts
src/__tests__/heartbeat-process-recovery.test.ts
src/services/execution-continuation.test.ts`
- Safety cases in the new test:
- The redirect is saved, then delivered as exactly one successor run
with the original user's authority. The old provider run is not
executed.
- Input written before the Stop stays skipped and creates no successor.
- The UI Stop button uses the same `POST /heartbeat-runs/:id/cancel`
path. A comment with `interrupt: true` cancels through the same
`cancelRun` and then queues the comment wake. Both reach the same gate.
These were checked by code reading, not by a separate test.
- Not done: a live staging reproduction at the fixed revision.
Deployment is out of scope.

## Risks

- Behavior change: for sources without a native baseline, a post-Stop
message is now saved and delivered after recovery, instead of dropped.
Admission still blocks it until workspace repair is verified and the
previous execution has stopped. While blocked, the task shows "Your
message is saved."
- If admission never succeeds, the message stays saved and visible.
Before, it was silently lost.
- No schema or API change.

## Model Used

- Claude Opus 5.5 (`claude-opus-5-5`), Anthropic, in Claude Code with
tool use (shell, file edits, browser for read-only staging diagnostics).

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have searched GitHub for duplicate or related PRs and linked
them above
- [x] I have either (a) linked existing issues with `Fixes: #` / `Closes
#` / `Refs #` OR (b) described the issue in-PR following the relevant
issue template
- [x] I have not referenced internal/instance-local Paperclip issues or
links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip`
URLs)
- [x] My branch name describes the change (e.g. `docs/...`, `fix/...`)
and contains no internal Paperclip ticket id or instance-derived details
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [ ] All Paperclip CI gates are green
- [ ] Greptile is 5/5 with no open P2s, recommendations, or follow-ups
- [ ] I will address all Greptile and reviewer comments before
requesting merge

🤖 Generated with [Claude Code](https://claude.com/claude-code)

Co-authored-by: Paperclip <noreply@paperclip.ing>
Co-authored-by: Claude Opus 5.5 <noreply@anthropic.com>
2026-11-04 17:39:48 -06:00
DottaandPaperclip b7ef307a65 fix(workspaces): wait for an ended writer's save instead of failing setup (#19074)
## Thinking Path

> - Paperclip is the open source app people use to manage AI agents for
work
> - Agent runs can use a remote task workspace in a sandbox. One writer
run at a time holds that workspace.
> - When a writer run ends, its workspace save and sandbox release
finish a few minutes later. The writer hold stays until then.
> - A new run that started in that interval failed with `setup_failed`:
"The workspace still has an unfinished writer or save operation."
> - A live writer already makes the new run wait (`workspace_busy`,
added in #18691). An ended writer that is still settling did not.
> - This pull request reports the ended writer as the holder too, so the
new run waits instead of failing.
> - The benefit is that work continues automatically after a short
settle interval. Users do not see a failed run and a blocked task.

## Linked Issues or Issue Description

Refs #18691

**What happened?**
A task run failed during workspace setup with `setup_failed` and the
error "The workspace still has an unfinished writer or save operation."
The previous run on the same task had ended a few seconds before. Its
sandbox lease was released 4 to 17 minutes later. A staging soak
recorded 31 of these failures over 14 tasks in about 29 hours.

**What did you expect to happen?**
The new run waits for the workspace, as it does when the previous writer
is still running. It continues when the save and release settle.

**Steps to reproduce**
1. Bind a task to a remote workspace whose authority has `dirty: true`
and a `writerRunId` for a run with status `failed` that ended now.
2. Wake the task's agent.
3. The run fails with `setup_failed`. No retry is scheduled.

## What Changed

- `reserveRemoteWorkspace` now throws `RemoteWorkspaceWriterActiveError`
for an ended writer whose save or sandbox release has not settled.
Before, it threw a plain 409 conflict. The error keeps the same message,
status and `remote_workspace_writer_pending` code. It uses the writer's
`finishedAt` as its last activity and sets `ended: true`.
- Workspace preparation already converts that error to a
`workspace_busy` deferral with the one-hour holder cutoff. It now passes
`holderEnded` to the deferral.
- `WorkspaceBusyDeferral` says "ended, but its workspace save has not
settled" for an ended holder, instead of "is still running".
- A writer that is missing or has no task still gets the plain conflict,
as before.
- `doc/execution-semantics.md` describes the wait and its cutoff.

## Verification

- Red before the fix: the new test "waits for a writer that just ended
while its save or sandbox release settles" failed. The run had `status:
failed`, `errorCode: setup_failed`, `executionRecovery.kind: bootstrap`.
This is the same result as the staging failures.
- Green after the fix:
`cd server && npx vitest run
src/__tests__/heartbeat-remote-workspace-busy.test.ts
src/services/remote-workspace-reservation.test.ts`
  (16 tests pass.)
- Safety cases in the new tests:
- The waiting run does not change the workspace authority. The unsaved
writer's files and hold stay unchanged.
- A writer that ended more than one hour ago still causes the
unfinished-writer setup failure, with no scheduled retry. The wait is
bounded.
- Existing cases still pass: live writer wait with Stop and
reassignment, the concurrent reservation race
(`remote_workspace_writer_pending`), and the unused-reservation
takeover.
- Also run: `remote-workspaces.integration.test.ts`,
`heartbeat-workspace-busy.test.ts`,
`remote-workspace-save-concurrency.test.ts`,
`workspace-recovery.test.ts`. All 6 suites pass (442 tests).
- Not done: a live run on staging at this revision. The fix is not
deployed.

## Risks

- A task whose ended writer never settles now makes up to about one hour
of short `workspace_busy` waits (one scheduled retry every 1 to 2
minutes) before it fails. Before, it failed at once. The end state after
the cutoff is the same.
- Some of the staging failures have other causes that this change does
not fix:
- A previous run that stays `running` with no output for more than one
hour still causes this failure, as intended.
- A dirty workspace whose writer ended without a saved result (for
example a workspace finalization retry that never runs) still blocks the
task after the cutoff. These need separate fixes.
- No schema, API or UI changes.

## Model Used

- Anthropic Claude Opus 5.5 (`claude-opus-5-5`) in Claude Code, with
tool use (shell, browser reads of staging run records) and extended
reasoning.

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have searched GitHub for duplicate or related PRs and linked
them above
- [x] I have either (a) linked existing issues with `Fixes: #` / `Closes
#` / `Refs #` OR (b) described the issue in-PR following the relevant
issue template
- [x] I have not referenced internal/instance-local Paperclip issues or
links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip`
URLs)
- [x] My branch name describes the change (e.g. `docs/...`, `fix/...`)
and contains no internal Paperclip ticket id or instance-derived details
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [ ] All Paperclip CI gates are green
- [ ] Greptile is 5/5 with no open P2s, recommendations, or follow-ups
- [x] I will address all Greptile and reviewer comments before
requesting merge

🤖 Generated with [Claude Code](https://claude.com/claude-code)

---------

Co-authored-by: Paperclip <noreply@paperclip.ing>
2026-11-04 17:39:26 -06:00
Dotta 071b4dd5c3 fix(evals): preserve continuation restart and approval boundaries (#19076)
## Thinking Path

> - Paperclip manages work done by AI agents.
> - Product E2E journeys test that work through the UI and public APIs.
> - A continuation must retain completed work across a server restart.
> - A human-only plan request needs a recorded human decision.
> - The current fixtures retain an old Vite client and dismiss the plan
request before sending a comment.
> - This change uses the existing restart guard and approves the exact
current plan through its UI.

## Linked Issues or Issue Description

No separate issue exists. The failures are retained in [the original
complete Product
run](https://github.com/paperclipai/paperclip/actions/runs/41915965118).

**What happened?**

`completed-action-resume` reached its intended completed-child and
pending-question state. Its navigation then hit the original 30-second
limit after a server restart. The retained trace shows the old Vite
client polling during listener replacement. The existing chat restart
wrapper unloads that client, but the continuation callback did not use
it.

`revision-preserves-approval` saved the revised plan and final output.
Its exact current human-only confirmation remained pending. The fixture
had clicked Dismiss to enter a plain approval comment. A comment does
not resolve that card, so the final pending-work checks correctly
failed.

**Expected behavior**

Unload the old client before the existing restart. Use the real Confirm
action on the exact current plan revision. Require its saved human
acceptance before the normal continuation settles. Preserve all original
final checks and limits.

**Steps to reproduce**

Run those two existing continuation cases from source `4740d251`. The
original run preserves both failures. The focused controls below require
no provider credentials.

**Paperclip version or commit**

Original failure source: `4740d251b7032e714d33039ba66a56948238c38f`.

**Deployment mode**

Isolated local Product E2E servers in GitHub Actions.

## What Changed

- Route only the continuation restart callback through the existing
`restartChatServer` wrapper.
- Select the one pending confirmation for the exact saved plan revision.
Recheck it before the UI action.
- Click its scoped Confirm button. Require the same target, accepted
outcome, human resolver and timestamp in the saved receipt.
- Preserve the generic chat Dismiss behavior, ordinary reply cases,
original prompts, models, run bounds, grading and deadlines.
- Add focused unit and browser controls for the approval boundary.

## Verification

- The original full run retains these two failed grades. Cleanup passed
in both; that does not make either case pass.
- Focused continuation unit controls: 44 passed across four files. The
final new helper controls also passed 3/3.
- Three distinct controlled browser checks passed: the existing
old-client restart guard, the exact current human-only Confirm action,
and rejection of a changed revision without any approval POST.
- The browser controls use local HTTP fixtures. They do not prove a
fresh provider journey passed.
- All six files match the tested handoff hashes. `git diff --check`
passes.
- Local harness typecheck reached six diagnostics from stale cached
dependency declarations. The missing exports are in unchanged
adapter-utils and Runner code. No owned-file diagnostic remains. No
source or lockfile workaround was used. Fresh CI typecheck, build and
tests remain required.
- Fresh real Product acceptance has not run for this repair. The
original 20-case result remains 13 passed and 7 failed.


Current-head CI passes at `335683b741df5a3d0b76d035e105f0b44eda832d`:
required `ci / verify` and `ci / e2e` are green. [CI
run](https://github.com/paperclipai/paperclip/actions/runs/41922544434).
Greptile is 5/5 on this head. Ponytail is 4/5 with a ship
recommendation; its checkpoint warning was resolved with the dominating
awaited snapshot/push proof. No source changed after these checks. Real
changed-source journey acceptance remains pending.

## Risks

- The browser controls model the restart and approval boundaries; the
original real cases must still run after delivery.
- A changed or stale confirmation now fails before an approval. A
dismissed card or an agent-authored claim cannot satisfy human
acceptance.
- This fixture correction grants no new product permission and changes
no provider or scenario limit.

## Model Used

OpenAI `gpt-6.1-sol` in Codex, with `max` reasoning effort. The runtime
reports a 475,000-token context window. Used reasoning, code editing,
shell tools and provider-free browser controls.

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have searched GitHub for duplicate or related PRs and linked
them above
- [x] I have either (a) linked existing issues with `Fixes: #` / `Closes
#` OR (b) described the issue in-PR following the relevant issue
template
- [x] I have not referenced internal/instance-local Paperclip issues or
links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip`
URLs)
- [x] My branch name describes the change (e.g. `docs/...`, `fix/...`)
and contains no internal Paperclip ticket id or instance-derived details
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [x] All Paperclip CI gates are green
- [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups
- [x] I will address all Greptile and reviewer comments before
requesting merge
2026-11-04 17:39:10 -06:00
3634c4a845 fix(chat): log the underlying error when a publication becomes delivery_unknown (#18875)
## Thinking Path

> - Paperclip is the open source app people use to manage AI agents for
work
> - Chat connectors (Slack and others) publish agent messages to
external conversations through the publication worker
> - When the provider accepts a message but the local commit after the
send fails, the publication becomes `delivery_unknown`
> - A `delivery_unknown` row blocks the later publications in the same
conversation until an operator resolves it
> - The log line for this case contains only the generic reason. It
drops the error that the post-send commit threw
> - Operators cannot see why the commit failed, so they cannot tell a
race from a lease loss or another cause
> - This pull request adds the underlying error, redacted and
length-limited, to the existing warning for this case only
> - The benefit is that operators and maintainers can find the real
cause of stalled chat threads

## Linked Issues or Issue Description

Refs #18874

I searched open and closed issues and pull requests for
`delivery_unknown`, Slack publication failures and "could not confirm
its durable result". I found no duplicate. #18874 describes the bug and
the proposed behavior fix. This pull request does not change behavior.
It only makes the cause visible.

## What Changed

- `server/src/services/chat-channels/publications/failures.ts`: when
`providerAccepted` is true, the `chat publication failed` warning gets a
`cause` field. The field contains the underlying error message, redacted
with `redactSensitiveText` and limited to `MAX_ERROR_TEXT`, like the
existing `error` field.
- The stored `redactedError`, the disposition and the operator
resolution flow do not change.
- `server/src/__tests__/chat-run-milestone-work.test.ts`: the existing
`rechecks resolved prompt ownership after delivery ...` test now spies
on `logger.warn`. It asserts that `delivery_unknown` logs the `cause`,
and that `retry` and `failed` do not log it.

## Verification

- Ran in a `node:24-bookworm-slim` container on this branch:
- `npx vitest run src/__tests__/chat-run-milestone-work.test.ts` (in
`server/`): 72 passed.
  - `pnpm run typecheck` (in `server/`): passed.
- Negative check: I removed only the new `cause` field and ran the test
again. The two `delivery_unknown` cases failed. The `retry` and `failed`
cases passed.

## Risks

- Low risk. The change adds one field to one warning log line, only for
publications that the provider already accepted.
- The new field uses the same redaction and length limit as the existing
`error` field, so it does not add a new path for secrets into the log.

> For core feature work, check [`ROADMAP.md`](ROADMAP.md) first and
discuss it in `#dev` before opening the PR. Feature PRs that overlap
with planned core work may need to be redirected — check the roadmap
first. See `CONTRIBUTING.md`.

## Model Used

- Anthropic Claude Opus 5.5 (`claude-opus-5-5`), 1M context window, in
Claude Code with tool use (shell, file edits, code search). A human
reviewed and requested the change.

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have searched GitHub for duplicate or related PRs and linked
them above
- [x] I have either (a) linked existing issues with `Fixes: #` / `Closes
#` / `Refs #` OR (b) described the issue in-PR following the relevant
issue template
- [x] I have not referenced internal/instance-local Paperclip issues or
links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip`
URLs)
- [x] My branch name describes the change (e.g. `docs/...`, `fix/...`)
and contains no internal Paperclip ticket id or instance-derived details
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [ ] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [ ] All Paperclip CI gates are green
- [ ] Greptile is 5/5 with no open P2s, recommendations, or follow-ups
- [x] I will address all Greptile and reviewer comments before
requesting merge

Co-authored-by: lyuboslavmedarov <285605601+lyuboslavmedarov@users.noreply.github.com>
Co-authored-by: Claude Opus 5.5 <noreply@anthropic.com>
2026-11-04 17:38:39 -06:00
Svetlana ZolotenkovaandClaude Opus 5.5 bce9551a36 fix(recovery): skip successful-run handoff for routine executions (#9129)
## Thinking Path

> - Paperclip orchestrates AI agents for zero-human companies, and the
issue board is the surface those agents work from
> - Recovery is the subsystem that notices when an agent run finished
but left no next step, and hands the issue back so the work is not
silently dropped
> - `decideSuccessfulRunHandoff` implements that check: after a
successful run it looks for a valid disposition on the issue and
enqueues a corrective handoff wake when it finds none
> - Routine execution issues (`originKind = "routine_execution"`)
deliberately stay `in_progress` between cron fires — one open issue is
coalesced across dispatches through the
`issues_open_routine_execution_uq` unique index
> - Recovery read that intended steady state as a *missing* disposition,
so every successful routine run enqueued a handoff wake, exhausted its
single allowed attempt, and left the issue `blocked` with a
`source_scoped_recovery_action` that re-woke the assigned agent
> - This pull request exempts routine executions from the successful-run
handoff, mirroring the existing issue-monitor maintenance skip
(`isIssueMonitorMaintenanceRun`)
> - The benefit is that routines stop generating self-inflicted recovery
churn while genuine stranded issues keep being caught

## Issue

_No public issue exists for this yet; describing it inline per
CONTRIBUTING.md ("Link Issues or Describe Them In-PR"), following the
bug report template._

**What happened?**
After every successful run of a routine execution issue, recovery
enqueued a corrective handoff wake because the issue had no terminal
disposition. The single allowed handoff attempt was then exhausted and
the issue landed in `blocked` with an active
`source_scoped_recovery_action`, which re-woke the assigned agent.
Observed in production as roughly 27 runs per hour on a single
orphan-check routine, which additionally tripped a false productivity
review on the assigned agent.

**Expected behavior**
A successful routine run that leaves the routine execution issue
`in_progress` is the intended waiting state. Recovery should skip the
successful-run handoff for `routine_execution` issues and let the
routine lifecycle own their disposition.

**Steps to reproduce**
1. Create a routine that dispatches an execution issue on a short cron
interval.
2. Let one dispatched run complete successfully without writing a
terminal status on the routine execution issue.
3. Observe the corrective handoff wake, the exhausted attempt, and the
issue moving to `blocked` with an active source-scoped recovery action.
4. Repeat on the next cron fire — the cycle restarts and the run rate
climbs.

**Paperclip version or commit**
`master` at the time this branch was cut; the guard is absent on current
`master`.

**Deployment mode / adapters / database**
Adapter-independent — the path is server-side in
`server/src/services/recovery/successful-run-handoff.ts`. Covered in
tests against embedded Postgres.

## What Changed

- `decideSuccessfulRunHandoff` returns `{ kind: "skip", reason: "routine
execution owns its own disposition" }` when `issue.originKind ===
"routine_execution"`, alongside the existing issue-monitor maintenance
skip.
- `originKind` was added to the handoff `IssueRow` projection and to the
issue select in `handleSuccessfulRunHandoff` in the heartbeat service,
so the guard has the field it needs.
- Added a regression test in `successful-run-handoff.test.ts` asserting
that a `routine_execution` issue is skipped rather than enqueued.

**Related PRs** (dedup search):
[#8622](https://github.com/paperclipai/paperclip/pull/8622) touches the
same routine-execution uniqueness index from the migration side;
[#6527](https://github.com/paperclipai/paperclip/pull/6527)
auto-resolves stale source recovery actions, which is the symptom this
PR stops producing. No PR was found that implements this guard.

## Verification

- `cd server && pnpm exec vitest run src/services/recovery --config
vitest.config.ts` — recovery suites pass.
- `cd server && pnpm exec vitest run
src/__tests__/heartbeat-process-recovery.test.ts --config
vitest.config.ts` — passes; 59 tests across both suites.
- Regression check: with the `routine_execution` guard removed, the new
test falls through to `enqueue` and fails; with the guard it passes.
- `pnpm --filter @paperclipai/server typecheck` — clean.

## Risks

- Low risk, behavioural only. No schema change and no migration in this
change.
- The guard is narrow: it keys on `originKind === "routine_execution"`,
so ordinary assigned issues keep their existing successful-run handoff
behaviour unchanged.
- If a routine execution issue ever did need corrective handoff, it
would now be skipped. That trade-off is deliberate — the routine
lifecycle already owns these issues, and the coalescing unique index
guarantees at most one open issue per routine.

## Model Used

- Claude (Anthropic), Claude Opus 4.6 via the Claude Code agent harness,
extended thinking enabled, with tool use (file edits, shell, ripgrep)
against a local checkout.

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have searched GitHub for duplicate or related PRs and linked
them above
- [x] I have either (a) linked existing issues with `Fixes: #` / `Closes
#` / `Refs #` OR (b) described the issue in-PR following the relevant
issue template
- [x] I have not referenced internal/instance-local Paperclip issues or
links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip`
URLs)
- [ ] My branch name describes the change (e.g. `docs/...`, `fix/...`)
and contains no internal Paperclip ticket id or instance-derived details
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [ ] All Paperclip CI gates are green
- [ ] Greptile is 5/5 with no open P2s, recommendations, or follow-ups
- [x] I will address all Greptile and reviewer comments before
requesting merge

---

**Review request (2026-08-19).** Rechecked against `master` a5f3ac6b4:
`decideSuccessfulRunHandoff` skips on `hasActiveRoutineContinuation`
(another live run on the same issue) but never on `originKind ===
"routine_execution"`, so a routine issue coalesced across fires still
draws a missing-disposition handoff. Green and merges cleanly.

We cannot use the reviewer field as outside contributors, so flagging
the recent maintainers of the touched files instead: @cryppadotta,
@devinfoley. Happy to close if this is not wanted — no need to reply
otherwise.

Co-authored-by: Claude Opus 5.5 <noreply@anthropic.com>
2026-11-04 17:35:34 -06:00
Nicky LeachandClaude Opus 5.5 aa8372fd5d fix(accounting): post late usage to its owning run (#18991)
## Thinking Path

> - Paperclip is the open source app people use to manage AI agents for
work.
> - Native Runner sessions keep one provider conversation across task
turns, so Paperclip accounts usage per run.
> - Codex can report more usage for a turn after its run's charge was
posted.
> - The Runner then marked the session `reconciliation_required`. If
another run was attached, it also failed that run. Core refused the
delivery with `native_usage_after_finalization_requires_reconciliation`.
> - That usage has already happened. Blocking the session cannot undo
it, and the debt waited for an operator while the run totals stayed
wrong.
> - Codex totals are cumulative, and the Runner already knows the owning
run in most cases. So the correct amount can be posted automatically.
> - This pull request reports the exact increment with its owner, and
posts it to the owning run as a separate cost event.
> - The benefit is that run accounting becomes correct without stopping
work, and an old run's usage can no longer fail a newer run.

## Linked Issues or Issue Description

No issue exists. I searched open and closed pull requests and issues for
"late usage", `native_usage_after_finalization_requires_reconciliation`
and `codex_usage_accounting_integrity`. I found no duplicate.

**What happened?**

Code review found this while diagnosing session recovery failures. When
Codex reported usage above the known total for a turn that was not
active, the Runner blocked the session. If that turn belonged to a
previous run, the Runner also failed the attached run with
`codex_usage_accounting_integrity`. Core kept the receipt as debt, and
could correct it automatically only if the token counts were unchanged.

**Expected behavior**

Late usage does not stop any run or session. The charge goes to the run
that used the tokens, and it is auditable.

**Steps to reproduce**

1. Finish a Codex turn on a native Runner session and attach the next
run.
2. Have Codex send `thread/tokenUsage/updated` with a higher total for
the finished turn.
3. On the unfixed code, the attached run fails and later attaches are
refused.
`late_codex_usage_requires_durable_reconciliation_before_or_after_handoff`
encoded this behavior.

**Paperclip version or commit**

`master` at `04a24f4e06`.

**Deployment mode**

Any deployment that uses a native Runner with Codex.

## What Changed

- **Runner:** late usage no longer sets `reconciliation_required` or
fails a run. For a turn that belongs to a previous run, the Runner emits
`usage.reported` with the increment in `runDelta` and the owner in
`reconciliation.priorOrigin`. `runDeltaAvailable` stays `false`, so an
older Core does not bill it to the attached run.
- **`CodexRunUsage::absorb_late_usage`:** treats only usage above the
known thread total as late, and keeps the attached run's delta
unchanged. A report at or below that total adds nothing, so the sum
across runs always equals the thread total and a replay cannot charge
twice.
- **Delivery:** `captureLateUsageForOwner` stores the increment as a
late receipt on the owning run. The owner must be a finished run in the
same company and native session. If the Runner cannot name the owner,
Core uses the session's last finished run and records the attribution as
`inferred`.
- **Local Runner:** late usage stays with the run that is active when it
arrives, or the next run. Usage reported between two runs stays in the
next run's delta, so the total stays exact.
- **Accounting:** `reconcileLateRunUsageReceiptInTransaction` posts a
token increase as a new cost event with the key
`heartbeat:<run>:late:<receipt>`. It updates the run totals so the
accounting integrity check still agrees, records
`cost.late_usage_posted` in the activity log, and queues budget
evaluation.
- **No more refusal:** `persistUsageReceipt` no longer throws after it
saves late evidence, so late usage cannot wedge a Runner outbox.
- **Covered receipts:** an older same-source receipt at or below the
accepted totals, with matching billing, is cleared because a newer
cumulative receipt already covers it. Conflicting billing stays as debt.
- **Older Runners:** a zero-filled invalidation stays on the delivering
run.
- **Unchanged:** a newer lower total, a changed model or billing type,
and per-model receipts stay as visible accounting debt for an operator.
- **Unchanged:** an unexpected provider message during the warm
attachment drain still fails closed. A separate change addresses that
gate.
- **Docs:** added "Late provider usage" to `doc/execution-semantics.md`.

## Verification

- `cd packages/paperclip-runner/runner && cargo test --locked -p
paperclip-runner-core --test codex_provider`: 99 passed, 2 ignored.
- `cargo test --locked -p paperclip-runner-core --lib codex_usage`: 7
passed. This includes new tests for the out-of-order and repeated report
cases.
- `cd server && pnpm exec vitest run
src/services/run-cost-accounting.test.ts
src/services/native-runtime/native-usage-delivery.integration.test.ts
src/services/native-runtime/native-recovery-usage-delivery.test.ts
src/__tests__/cost-data-quality.test.ts`: passed against embedded
PostgreSQL before the last review fixes, and the accounting and delivery
files were re-run after them.
- `npx tsc --noEmit -p .` in `server` reports no errors.
- New tests cover exact and inferred owners, repeated delivery, late
usage that arrives before the owner's charge posts, another session's
run, an older Runner's report with no increment, a same-run increase,
and a lower total. They also run the accounting integrity check after
posting.
- **Review:** Greptile Apex scored 1/5, 4/5, 3/5, 2/5 and 4/5 while
findings were fixed, then 5/5 at the current head.
- **Local Runner:** driver tests cover usage reported between two runs,
including across a restore. No end-to-end local run has exercised it.
- **Not run locally:** the full test suite. CI provides that coverage.
- **Not verified live:** a read-only check of a test deployment found no
late receipts in its history, so this path has only run against
fixtures.

## Risks

- **Run totals can rise after a run finishes.** This is deliberate. The
correction is a separate cost event and an activity log entry.
- **Budgets are corrected after the fact.** A late charge can put an
agent over budget after later work has started. Budget evaluation runs
after each correction, but it cannot prevent that work.
- **Local sessions accept imperfect attribution by design.** Their late
usage can land on the active or next run, because local sessions have no
durable path for routing it. This also applies after a Stop or a pause.
The total stays exact.
- **Out-of-order reports can leave tokens on the wrong run in the
session.** If a prior turn's report arrives after the attached run has
already counted past that total, those tokens stay on the attached run.
Moving them would need a lower correction to the attached run. The total
stays exact.
- **Inferred attribution can name the wrong run in the session.** The
usage still belongs to that session and the total stays correct. The
attribution is recorded as `inferred`.
- **A session with no finished run charges the delivering run,** as an
inferred late charge after its own charge posts.
- **Rollout order:** deploy Core before the Runner. An older Core would
keep this event on the attached run as incomplete usage, and would still
refuse a same-run late receipt.
- **Migrations:** this change has no migration.

> For core feature work, check [`ROADMAP.md`](ROADMAP.md) first and
discuss it in `#dev` before opening the PR. Feature PRs that overlap
with planned core work may need to be reworked.

## Model Used

- Anthropic Claude Opus 5.5 (`claude-opus-5-5`), through Claude Code,
with tool use and code execution. A human directed the design and
approved the scope.

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have searched GitHub for duplicate or related PRs and linked
them above
- [x] I have either (a) linked existing issues with `Fixes: #` / `Closes
#` / `Refs #` OR (b) described the issue in-PR following the relevant
issue template
- [x] I have not referenced internal/instance-local Paperclip issues or
links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip`
URLs)
- [x] My branch name describes the change (e.g. `docs/...`, `fix/...`)
and contains no internal Paperclip ticket id or instance-derived details
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [x] All Paperclip CI gates are green
- [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups
- [x] I will address all Greptile and reviewer comments before
requesting merge

🤖 Generated with [Claude Code](https://claude.com/claude-code)

---------

Co-authored-by: Claude Opus 5.5 <noreply@anthropic.com>
2026-11-04 15:30:55 -08:00
Devin FoleyandClaude Opus 5.5 15114bb9a0 fix(workspaces): keep durable seed copies above the free-space reserve (#18999)
persistDurableSeedArchive now checks the source file and applies the shared workspace free-space reserve before copying, so a large seed cannot fill the instance volume.

Co-Authored-By: Claude Opus 5.5 <noreply@anthropic.com>
2026-11-04 15:29:55 -08:00
Nicky LeachandClaude Opus 5.5 2c39a2866b feat(plugins): let managed config grant worker variables to a plugin (#19049)
## Thinking Path

> - Paperclip is the open source app people use to manage AI agents for
work
> - A managed instance gets its plugins from the control plane, and
people do not install them
> - Some of these plugins need deployment values, such as a service
origin and a capability
> - The plugin worker environment is scrubbed, and only a fixed list of
first-party providers gets deployment variables
> - Core also sends lifecycle events and project instance secrets only
to plugins with a saved config row
> - So a provisioned plugin cannot work until a person saves
configuration for it
> - This pull request lets the managed config grant named variables to a
selected plugin
> - The benefit is that a distribution plugin can run with no tenant
configuration, and Core does not need to name it

## Linked Issues or Issue Description

No issue exists. This describes the problem. I searched open pull
requests for related work and found no duplicate.

**What existing behavior does this improve?**

How a plugin provisioned through `plugins.autoInstall` receives its
deployment settings.

**Current behavior**

`buildPluginWorkerEnv` forwards variables only from a fixed list that
names first-party packages. A distribution plugin cannot be on that list
without Core naming it. A plugin with no `pluginConfig` row gets no
resource lifecycle events, and project instance secrets refuse it.

**Proposed behavior**

The managed config can include `plugins.workerEnv`. It maps a catalog
key to variable names. The worker of that plugin receives those
variables from the server process environment. The managed config can
also include `plugins.enabledCompanies`. It maps a catalog key to
company IDs. In those companies, the plugin gets lifecycle events and
can use project instance secrets with no config row.

**Reason and benefit**

The control plane stays the only place that decides which plugin gets
which values. Tenants do not handle these values, and they are not in
the database or in the managed config document.

**Alternatives considered**

- Create a config or enablement row for each company. The control plane
would need a new tenant write API, and a row can stay after the document
removes access or return after a database restore. The document is never
saved, like the other managed settings.
- Give a grant access to every company. This has no per-company opt-in.
- Put the values in the managed config document. The document does not
hold secrets, and this rule stays true because it holds only names.

## What Changed

- `parseManagedConfigEnv` accepts an optional `plugins.workerEnv`
object. Each key must be in `plugins.autoInstall`. Names must be
uppercase variable names, with no duplicates.
- Startup fails if a name looks like a host credential, such as a name
with `KEY`, `TOKEN`, `SECRET`, `PASSWORD`, `DATABASE` or `JWT` as a
word, or if it controls how the worker loads code, such as
`NODE_OPTIONS`.
- `parseManagedConfigEnv` accepts an optional `plugins.enabledCompanies`
object. Each key must be in `plugins.autoInstall`. Values must be
lowercase company UUIDs, with no duplicates.
- `managedPluginWorkerEnvGrant` and `managedPluginEnabledCompanies`
return values by plugin key. A managed instance only starts a selected
plugin from the current image, so the saved package path is not part of
this check. It can be old or null.
- `buildPluginWorkerEnv` forwards granted variables. This does not
depend on the `environment.drivers.register` capability.
- Plugin lifecycle delivery includes a plugin with no config row only
for the companies the document names. It still skips a company that
disabled the plugin. The runtime event listener follows the same rule.
- Project instance secrets accept a plugin with no config row only for a
company the document names.
- A variable grant alone gives no company access.
- `doc/plugins/DISTRIBUTION-PLUGINS.md` describes both sections.

## Verification

- `npx vitest run` in `server/` on `managed-config`,
`managed-plugin-worker-env`, `plugin-lifecycle-delivery`,
`project-instance-secrets`, `plugin-database` and `bundled-plugins`: 201
tests pass.
- The new tests cover a digest-verified distribution plugin, a stale
saved package path, a catalog key named after an inherited property, a
company the document does not name, a company that disabled the plugin,
a named company that does not exist, a grant with no enabled company,
and host credential names.
- `tsc --noEmit` in `server/` shows no errors in the changed files. My
worktree does not have the built `@paperclipai/paperclip-runner`
package, so unrelated files show errors locally. CI runs the full
typecheck.
- I did not run the full test suite locally. CI runs it.
- I did not test this change on a running instance.

## Risks

- **Older builds:** a build without this change refuses a document with
`plugins.workerEnv` or `plugins.enabledCompanies`, because it fails
closed on unknown keys. A control plane must send these sections only to
a build that supports them.
- **Trust:** the granted plugin gets the variable values in its process.
The image owner and the control plane already trust this plugin. The
name check stops a mistake with host credentials, but a name check
cannot prove that a value is not sensitive. Core cannot use an
allowlist, because it must not name the variables of a private plugin.
- **Company scope:** the control plane sets which companies a plugin
serves. A new company needs a new document, and the server reads the
document when it starts. Self-hosted instances do not change.
- **Rotation:** a new value reaches the worker only when the server
restarts. Rotation without a restart is not part of this change.
- **Background calls:** a grant does not add proactive company access. A
plugin that makes background calls with no invocation still needs a
saved config for that company.
- This changes core plugin behavior, and I did not discuss it in `#dev`
first. Maintainers can tell me if they want a discussion before review.

## Model Used

- Claude Opus 5.5 (`claude-opus-5-5`), through Claude Code, with tool
use and code execution.

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have searched GitHub for duplicate or related PRs and linked
them above
- [x] I have either (a) linked existing issues with `Fixes: #` / `Closes
#` / `Refs #` OR (b) described the issue in-PR following the relevant
issue template
- [x] I have not referenced internal/instance-local Paperclip issues or
links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip`
URLs)
- [x] My branch name describes the change (e.g. `docs/...`, `fix/...`)
and contains no internal Paperclip ticket id or instance-derived details
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [x] All Paperclip CI gates are green
- [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups

🤖 Generated with [Claude Code](https://claude.com/claude-code)

---------

Co-authored-by: Claude Opus 5.5 <noreply@anthropic.com>
2026-11-04 15:24:43 -08:00