Commit Graph
5090 Commits
Author SHA1 Message Date
DottaandPaperclip 52ea8711ef Merge origin/master instruction working-copy extraction
Co-Authored-By: Paperclip <noreply@paperclip.ing>
2026-10-12 10:55:01 -05:00
DottaandPaperclip ce08872dfb refactor(heartbeat): extract instruction working-copy lifecycle (#15984)
## Thinking Path

> - Paperclip runs agent tasks and preserves their managed agent files.
> - Heartbeat must prepare a private copy, collect stopped-provider
edits, and retain ownership during warm-session handoff.
> - That lifecycle is spread across preparation, adapter callbacks, and
cleanup.
> - A per-run controller can own the copy and receipt while the executor
retains teardown ordering.
> - This PR moves that coordination into a dedicated module.
> - Live getters preserve updated state and partially acquired
resources.

## Linked Issues or Issue Description

**What existing behavior does this improve?**
Maintenance of heartbeat instruction preparation. This is the second and
final PR in this batch, originally stacked on #15980. That dependency is
now merged; this PR is rebased onto its squash merge with an identical
patch and identical touched-file contents. Related-PR search found no
duplicate extraction.

**Current behavior**
After #15980, `heartbeat.ts` has 4,215 lines and 173,657 bytes. It
coordinates instruction-copy preparation, save receipts, warm handoffs,
and deferred cleanup inline.

**Proposed behavior**
`heartbeat/instruction-working-copy.ts` owns the per-run lifecycle in
233 lines. `heartbeat.ts` becomes 4,055 lines and 162,520 bytes. The
executor retains the outer release order, unavailable-copy reporting,
and environment/service cleanup policy.

**Reason and benefit**
The copy, save receipt, and warm ownership are readable together. The
remaining executor names preparation and dispatch phases without
obscuring teardown decisions.

**Breaking changes**
None intended. All 140 named public heartbeat exports remain unchanged.

## What Changed

- Extract copy preparation, save/checkpoint callbacks, warm
reservation/adoption, prompt guidance, and the deferred-release closure.
- Read the executor's current run row through a callback; expose current
copies, receipts, and acquired cleanup handles through live getters.
- Keep cleanup handles available after preparation failure, and preserve
release-before-retry on invalidated warm reuse.
- Add four public-path characterization tests with real disposable
PostgreSQL and files, plus four direct boundary tests.
- Add isolated browser acceptance with a real process that edits
instructions, completes its task, and reads the saved bytes on its next
task.
- Document the boundary and opt-in acceptance command.

## Verification

- **Before extraction:** four new public-path tests pass on the original
implementation, as do 108 existing
instruction-copy/directory/native-cleanup tests. The two-task browser
journey also passes on the baseline server.
- **After extraction:** all 112 baseline tests pass; all four new
boundary tests pass; 12 selected native-session ownership/retirement
cases pass (the other 670 cases were outside this focused selection).
- **Browser acceptance:** the fresh extracted-code server passes the
full two-task journey (25.9 seconds): real child-process edits,
saved/unchanged receipts, canonical bytes through the agent-file API,
next-task restore, completed task UI, and copy cleanup.
- `pnpm -r typecheck`, final server typecheck, and `pnpm build` pass.
Module-boundary and public-export checks pass.
- Normalized syntax comparison confirms all moved bodies and the
reconstructed executor match the base, accounting explicitly for live
run getters and delegation.
- Final rebased head: `a08872c97e587a21ffc0fc6b78f34b81e484e7b0`.
Combined entry-point and boundary regressions pass again (12/12); fresh
Greptile review is 5/5 with no findings. All 55 current-head checks pass
(two configured skips), including the hosted full-suite tests, build,
typecheck, and all eight browser shards. There are no open review
threads.

## Risks

- Acquisition can succeed before preparation throws. Boundary tests
verify that both the reservation and a transferred copy remain visible
to the cleanup owner.
- Callbacks can replace copy/save state during execution. Public tests
verify saved receipts; direct tests verify the current run row, warm
checkpoint receipt, and permission-root preservation.
- Missing edit authorization and cleanup failure must remain nonfatal.
Characterization tests revoke actual membership after dispatch admission
and inject a cleanup error while preserving the saved result.
- The browser uses a test-launcher-only instruction-capable wrapper
around the real process adapter. Production adapter capabilities are
unchanged. No live provider calls are made; native warm ownership is
covered by focused module and native-session tests rather than a live
provider browser run.

## Model Used

OpenAI Codex, based on GPT-6, assisted with reasoning, code edits, tool
execution, and verification. The exact deployment model ID and
context-window size are not exposed in this session.

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have searched GitHub for duplicate or related PRs and linked
them above
- [x] I have either (a) linked existing issues with `Fixes: #` / `Closes
#` / `Refs #` OR (b) described the issue in-PR following the relevant
issue template
- [x] I have not referenced internal/instance-local Paperclip issues or
links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip`
URLs)
- [x] My branch name describes the change (e.g. `docs/...`, `fix/...`)
and contains no internal Paperclip ticket id or instance-derived details
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [x] All Paperclip CI gates are green
- [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups
- [x] I will address all Greptile and reviewer comments before
requesting merge

Co-authored-by: Paperclip <noreply@paperclip.ing>
2026-10-12 10:52:32 -05:00
DottaandPaperclip e2825f0f14 Merge origin/master test coverage consolidation
Co-Authored-By: Paperclip <noreply@paperclip.ing>
2026-10-12 10:47:30 -05:00
DottaandPaperclip 1e0cfcb4fc test: retire redundant suites and consolidate owner coverage (#15978)
Retire duplicate ACPX and Codex proof after migrating unique assertions to their behavioral owners. Consolidate repeated fixtures and exact case matrices while preserving lifecycle, protocol, company, credential, approval, and ordering contracts. Remove the unused runtime-controls compatibility path and document test ownership and preservation evidence.

Co-Authored-By: Paperclip <noreply@paperclip.ing>
2026-10-12 10:44:02 -05:00
DottaandPaperclip e7d07f00a3 Merge origin/master runtime service extraction
Co-Authored-By: Paperclip <noreply@paperclip.ing>
2026-10-12 10:43:34 -05:00
DottaandPaperclip 94e4218310 refactor(heartbeat): extract runtime service coordination (#15980)
## Thinking Path

> - Paperclip is the open source app people use to manage AI agents for
work.
> - Heartbeat runs start workspace services and receive service reports
from adapters.
> - Service context updates and readiness notices are spread through the
executor.
> - These steps share a clear responsibility, while process and lease
ownership already live elsewhere.
> - This pull request puts service coordination in one module.
> - The executor retains the same dispatch and cleanup order.

## Linked Issues or Issue Description

**What existing behavior does this improve?**
Maintenance of heartbeat execution. This is the first of two final
focused extractions after #15973. Related #15653 changes runtime
callback origins; this PR preserves that policy.

**Current behavior**
`heartbeat.ts` has 4,372 lines and 178,459 bytes. It validates service
intents, starts services, persists adapter reports and primary URLs, and
posts readiness notices inline.

**Proposed behavior**
`heartbeat/runtime-services.ts` owns those steps in 212 lines.
`heartbeat.ts` becomes 4,215 lines and 173,657 bytes. Process registries
and leases stay in `workspace-runtime.ts`. The executor still releases
services in its original cleanup path.

**Reason and benefit**
Service coordination has named preparation and result phases. The
execution path is easier to read without changing service lifetime or
moving cleanup policy.

**Breaking changes**
None intended. All 140 named public heartbeat exports remain available,
including `postWorkspaceReadyComment`.

## What Changed

- Move service-intent validation, startup, adapter-result persistence,
and readiness notices into one module.
- Preserve mutable run context, primary URL selection, notice error
handling, and release ordering.
- Add four public-path tests using disposable PostgreSQL, real HTTP
service processes, and a fixture adapter.
- Extend browser recovery acceptance to fetch the actual service URL,
check the readiness notice, and verify listener cleanup.
- Update the module map and acceptance instructions.

## Verification

- Before extraction: all five tests pass, including the four new
characterization cases and existing notice formatting test.
- After extraction: all 17 tests pass across service coordination,
notice formatting, output recording, and runtime authorization.
- Structural comparison confirms that all moved bodies and the
reconstructed executor match the baseline. Module boundary checks pass.
- `pnpm -r typecheck` and `pnpm build` pass.
- Extended isolated browser acceptance: **2/2 pass** (3.7 minutes),
covering actual service readiness, recovery, bounded failure, and
cleanup. At `8e33e2032de681082f128470eb8ab0711b382afe`, all 55
current-head checks pass (two configured skips), including hosted
full-suite tests. Greptile is 5/5 with no findings or review threads.

## Risks

- Service context must be persisted before adapter dispatch and before
run completion. The tests inspect both phases and preserve the first
service URL when adapter reports arrive.
- Notice failures must remain nonfatal. The public-path test checks both
startup and result notices.
- Shared services must survive run cleanup; ephemeral services must stop
after success or failure. Tests use actual processes and HTTP requests.
- The fixture supplies UUID service report IDs, as required by the
database. The existing generated-ID fallback for reports without IDs is
outside this extraction.
- Test adapters and services are local fixtures; these tests make no
live provider calls.

## Model Used

OpenAI Codex, based on GPT-6, assisted with reasoning, code edits, tool
execution, and verification. The exact deployment model ID and
context-window size are not exposed in this session.

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have searched GitHub for duplicate or related PRs and linked
them above
- [x] I have either (a) linked existing issues with `Fixes: #` / `Closes
#` / `Refs #` OR (b) described the issue in-PR following the relevant
issue template
- [x] I have not referenced internal/instance-local Paperclip issues or
links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip`
URLs)
- [x] My branch name describes the change (e.g. `docs/...`, `fix/...`)
and contains no internal Paperclip ticket id or instance-derived details
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [x] All Paperclip CI gates are green
- [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups
- [x] I will address all Greptile and reviewer comments before
requesting merge

Co-authored-by: Paperclip <noreply@paperclip.ing>
2026-10-12 10:40:42 -05:00
DottaandPaperclip ea1a20ec45 Preserve workspace ownership during archive relocation
Co-Authored-By: Paperclip <noreply@paperclip.ing>
2026-10-12 10:26:34 -05:00
DottaandPaperclip 725614f9c4 Merge origin/master and preserve task workspace behavior across service extractions
Co-Authored-By: Paperclip <noreply@paperclip.ing>
2026-10-12 10:21:02 -05:00
DottaandPaperclip 914b70572c refactor(heartbeat): extract execution configuration (#15973)
## Thinking Path

> - Paperclip is the open source app people use to manage AI agents for
work.
> - Heartbeat turns task, agent, environment, and account settings into
an executable run.
> - The executor still assembles scoped credentials and skill
configuration inline between environment selection and session
preparation.
> - That phase has a clear input/output boundary, but credential
acquisition must remain visible to cleanup even when later setup fails.
> - This pull request extracts configuration assembly and immediately
notifies the executor of acquired resources and redaction state.
> - The executor retains admission, dispatch, and cleanup, with the same
statement ordering and explicit busy-account deferral.

## Linked Issues or Issue Description

**What existing behavior does this improve?**
Maintenance of heartbeat execution. This PR follows #15969 and #15966,
both now merged. The branch is rebased onto `master`; `git range-diff`
confirms that the extraction patch is unchanged.

**Current behavior**
`heartbeat.ts` has 4,561 lines and 188,950 bytes. Configuration assembly
mixes workspace overrides, secrets, managed AI preparation, and skill
delivery into the executor.

**Proposed behavior**
`execution-configuration.ts` owns this preparation phase in 269 lines
and 16,204 bytes. The executor calls it between environment and session
preparation and retains immediate cleanup ownership. `heartbeat.ts`
becomes 4,372 lines and 178,459 bytes.

**Reason and benefit**
The execution path exposes another named phase, with tests that exercise
its effective configuration, resource lifetime, failure diagnostics, and
busy-account result through public heartbeat dispatch. Related work:
#11827 changes pre-dispatch secret refresh and #15355 changes GitHub
delegation; this extraction preserves current policies.

**Breaking changes**
None intended. Public exports remain available, and the original helpers
keep their modules.

## What Changed

- Move configuration merging, scoped secret resolution, managed AI
acquisition, runtime skills, connector instructions, and managed
identity preparation into one typed module.
- Notify the executor immediately when failure-redaction values, managed
credentials, and identity redaction become available. Returning
resources only after all preparation succeeds would lose cleanup on
partial failure.
- Preserve the live failure-secret getter for later runtime environment
changes. Return an explicit deferred result for busy accounts.
- Add four real-database characterization tests through
`heartbeat.wakeup`, using actual credential files and cleanup with a
fixture adapter.
- Update the developer module map.

## Verification

- Before extraction: all 45 tests pass across the new public-path tests
and existing project-environment tests.
- After extraction: 47 tests pass across execution configuration,
project environment, and runtime skills. No skips.
- Two additional real-process managed identity tests pass; nine
unrelated cases are deliberately filtered out.
- `pnpm -r typecheck` and `pnpm build` pass.
- Normalized syntax comparison confirms the moved body and reconstructed
executor match after accounting for immediate ownership callbacks and
the explicit prepared/deferred result.
- Isolated browser acceptance: 2/2 pass (3.9 minutes). A real process
worker completes after Git recovery, with persisted stdout and matching
final output byte counts. Persistent failures stop after three attempts.
Both outcomes survive reload. The disposable server was shut down after
verification.
- All eleven new public-path characterization cases across the three-PR
stack pass together on the final commit.
- All 140 named public exports from the batch baseline remain available.
- CI initially failed the legacy-continuation message browser case:
periodic recovery escalated the issue, then queue admission cancelled
the run with `execution_reconciliation_required` before configuration
preparation. The unchanged predecessor shard passes, and the exact case
passes locally (5 seconds in the browser). The original failing case
passed on its single rerun (8.2 seconds), but GitHub then shut down the
runner during a different test (`The runner has received a shutdown
signal`). The separate infrastructure restart completed: 24 browser
cases passed, with two existing optional cases skipped. Assertions and
timeouts are unchanged.
- Greptile: 5/5 on `27ab7e3df64c157ba1f00c5757db812ff7a4e5aa`, with no
actionable findings. Hosted full-suite CI passes on this exact commit:
all 54 check runs and the additional commit status are successful.

- Merge preparation: all eleven characterization tests pass after
rebasing onto `master`. Fresh full CI passes for
`1758673f87eaa76a8b2c520eac4b631ada5d9ba1`: 55 successful checks and two
optional Storybook skips, including all eight browser shards, typecheck,
tests, and build. Greptile is 5/5 on this exact commit with zero review
threads. All heartbeat source, tests, documentation, and browser
assertions are identical to the previously reviewed final stack.

## Risks

- A failure after AI acquisition must still remove the disposable
credential home. The new public-path failure test proves actual
filesystem cleanup and diagnostic redaction before the external
reporting sink.
- The baseline exposed an existing gap: arbitrary exception text in the
local `run.error` field can contain a credential even though the failure
reporter redacts it. This behavior is unchanged and merits a separate
fix; the test does not claim the local error field is sanitized.
- Account-busy deferral must return without dispatch while retaining its
scheduled retry. The new test checks the durable run states.
- Browser acceptance uses a real process fixture and disposable data,
without live provider calls.

## Model Used

OpenAI Codex, based on GPT-6, assisted with reasoning, code edits, tool
execution, and verification. The exact deployment model ID and
context-window size are not exposed in this session.

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have searched GitHub for duplicate or related PRs and linked
them above
- [x] I have either (a) linked existing issues with `Fixes: #` / `Closes
#` / `Refs #` OR (b) described the issue in-PR following the relevant
issue template
- [x] I have not referenced internal/instance-local Paperclip issues or
links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip`
URLs)
- [x] My branch name describes the change (e.g. `docs/...`, `fix/...`)
and contains no internal Paperclip ticket id or instance-derived details
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [x] All Paperclip CI gates are green
- [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups
- [x] I will address all Greptile and reviewer comments before
requesting merge

Co-authored-by: Paperclip <noreply@paperclip.ing>
2026-10-12 10:01:00 -05:00
DottaandPaperclip a42b2852fb Preserve legacy folder privacy and isolate unusable alternatives
Retain old physical owners before workspace source mutation, keep privacy history under the shared root fence, and isolate automatic file-availability failures. Skip unrelated invalid paths while retaining strict selected-root checks.

Co-Authored-By: Paperclip <noreply@paperclip.ing>
2026-10-12 09:57:04 -05:00
DottaandPaperclip 37913e4907 refactor(heartbeat): extract run output recording (#15969)
## Thinking Path

> - Paperclip is the open source app people use to manage AI agents for
work.
> - Heartbeat runs stream adapter output and persist execution results.
> - Output recording currently sits inside the executor beside admission
and cleanup.
> - Log handles, sequence numbers, progress writes, and excerpt buffers
share one attempt lifetime.
> - This pull request moves that state and its callbacks into a
per-attempt recorder.
> - The executor keeps dispatch and finalization visible, while
finalization reads live output values.

## Linked Issues or Issue Description

**What existing behavior does this improve?**
Maintenance of heartbeat execution. This PR follows #15966, which is now
merged. The branch is rebased onto `master`; `git range-diff` confirms
that its extraction patch is unchanged.

**Current behavior**
`heartbeat.ts` has 4,740 lines and 195,258 bytes. It directly owns log
handles, excerpt buffers, output sequence numbers, progress flushes, and
adapter event callbacks.

**Proposed behavior**
`run-output.ts` owns the per-attempt recorder. The main file has 4,561
lines and 188,950 bytes; the recorder has 209 lines and 7,757 bytes.

**Reason and benefit**
Output state has one explicit lifetime and interface. The shared log
store and finalization policy retain their original owners. Related open
output work includes #12539 and #15524; this PR does not change
redaction policy.

**Breaking changes**
None intended. Public flush constants and log formatting exports remain
available from `heartbeat.ts`.

## What Changed

- Move log initialization, redaction, excerpts, progress persistence,
live delivery, and adapter callbacks into `createHeartbeatRunOutput`.
- Preserve the acquired log handle if later setup fails. Bind callbacks
to the execution-start run row.
- Pass live excerpt getters to success and failure completion so output
arriving during finalization remains visible.
- Add three real-database public-path tests. Extend browser acceptance
to inspect persisted worker stdout and output byte counts.
- Update the module map.

## Verification

- Before extraction: 23 tests pass, including all three new output
characterization cases.
- After extraction: 45 tests pass across output, log formatting, event
sequencing, and run completion. No skips.
- `pnpm -r typecheck` and `pnpm build` pass.
- Normalized syntax comparison confirms the moved bodies and
reconstructed executor match. Reviewed the factory ownership, callback
binding, getter wiring, and constant re-exports separately.
- Isolated browser acceptance: 2/2 pass, including persisted worker
stdout and matching final byte counts. The process worker completes
after recovery; persistent timeouts stop after three attempts. Both
terminal states survive reload.
- Hosted full-suite CI passes on
`d32c8fc40e72b9766bdd9e191d777e8dc554e3f2`; all 55 reported checks are
successful. Greptile is 5/5 with zero review threads.
- The initial chat shard timed out waiting for GitHub mention admission.
Its fixture mocks heartbeat wakeup and never calls the output recorder.
Both parameterized cases passed locally; the unchanged shard passed on
one rerun. No test or timeout changes.

- Merge preparation: all seven session-preparation and run-output
regression tests pass after rebasing onto `master`. Fresh full CI passes
for `60e2a49ce2879645a9f618a801e0ba0903ede161`: 55 successful checks and
two optional Storybook skips, including all eight browser shards,
typecheck, tests, and build. Greptile is 5/5 on this exact commit with
zero review threads.

## Risks

- A stale excerpt snapshot could lose output that arrives while
finalization awaits I/O. Passing-before/passing-after tests exercise
this for both successful and failed runs.
- Per-attempt state must not become service-wide. Each executor
constructs its own recorder and keeps the existing shared store.
- Browser acceptance uses a real process fixture and disposable data; it
makes no live provider calls.

## Model Used

OpenAI Codex, based on GPT-6, assisted with reasoning, code edits, tool
execution, and verification. The exact deployment model ID and
context-window size are not exposed in this session.

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have searched GitHub for duplicate or related PRs and linked
them above
- [x] I have either (a) linked existing issues with `Fixes: #` / `Closes
#` / `Refs #` OR (b) described the issue in-PR following the relevant
issue template
- [x] I have not referenced internal/instance-local Paperclip issues or
links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip`
URLs)
- [x] My branch name describes the change (e.g. `docs/...`, `fix/...`)
and contains no internal Paperclip ticket id or instance-derived details
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [x] All Paperclip CI gates are green
- [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups
- [x] I will address all Greptile and reviewer comments before
requesting merge

Co-authored-by: Paperclip <noreply@paperclip.ing>
2026-10-12 09:51:17 -05:00
DottaandPaperclip d497d1ccec refactor(chat): extract failed-run retry coordination (#15845)
## Thinking Path

> - Paperclip manages agent work and sends results back to chat.
> - A failed chat run can be retried only while its original source
remains authorized.
> - That decision includes persisted source evidence and native runtime
state.
> - Retry claims also share in-flight promises and depend on service
shutdown.
> - This PR groups retry authorization, execution and notices in one
module.
> - The service retains the live admission, runtime and shutdown
boundaries.

## Linked Issues or Issue Description

Refs #15844, #15836, #15834 and #15823. Stack slice 5 of 5, based on
`codex/chat-publication-replacement`.
Merge each predecessor first, then retarget this PR. Do not merge the
stack out of order.

Stack order: #15823 (provider messages) → #15834 (resource
reconciliation) → #15836 (identity links) → #15844 (publication
replacement) → #15845 (failed-run retries). GitHub native stack merging
preserves this order and automatically restacks the remaining branches.

## What Changed

- Extract failed-run retry admission and coordination while keeping the
in-flight map, cursor, error class and authority registrations scoped to
one chat service.
- Move the exact Teams uncertain-file continuation proof into
`microsoft-teams/file-transfer-source.ts`.
- Pass the existing transaction, explicit source identifiers and denial
factory. Return only the proven publication ID.
- Keep committed-result, complete source-batch, ancestor and
other-uncertain-effect checks in shared `failed-run-retry.ts`.
- Keep native execution recovery together; its provider references
describe runner backends, not chat channels.
- The retry coordinator is 1,825 lines and the Teams proof is 149 lines.
Restack on revised #15844 and record the reassessment.

## Verification

- Baseline: 59 retry cases and six negative Teams authority cases
passed. The combined 65 cases passed after the move.
- Cases cover retry ownership, service restart/lifetime, ambiguous Teams
receipts, sibling unknown effects, changed source authority and active
attempts.
- Teams guard, joins, locks, attempt checks and selected ID match after
explicit input substitutions. The shared coordinator retains its state
and cleanup ownership.
- Server typecheck, module-boundary and whitespace checks passed.
- Integration uses disposable databases and fixture provider transports;
no live third-party execution is claimed.

- Fresh Greptile review is 5/5 on
`4f7151409717458717633aa270441a8faf33664e`, with a successful check and
no open review threads.
- Final-stack `pnpm -r typecheck` and `pnpm build` passed at
`57ec5ba94aecd860471f9b14db46f99120c7c790`.
- All CI checks passed on `57ec5ba94aecd860471f9b14db46f99120c7c790`.
- Full local `pnpm test:run` stopped in the general-server group: 18,763
passed, 105 skipped, and one test timed out after 20 seconds in
unchanged `workspace-runtime.test.ts` ("does not accept an occupied
allocated port when listener ownership is unavailable"). The same case
passed in an isolated rerun without code, assertion or timeout changes
(1 passed, 175 excluded). The original timeout is retained as a failed
full run; later workspace and serialized groups were not reached. The
full local gate remains unverified.

- Merge verification on the restacked tree: 118 focused identity,
publication, Photon and retry integration tests passed; server typecheck
and module-boundary checks passed. GitHub’s rebased trees exactly match
the previously reviewed file contents.

- All current-head required checks passed on
`4f7151409717458717633aa270441a8faf33664e`: full CI; Greptile 5/5 with
no unresolved threads.

## Risks

- Authorization must remain fail-closed across committed output and
retry admission. The helper proves only the Teams transfer; the caller
still checks the complete source and result in the same transaction.
- In-flight promises, error-class identity, registration cleanup, cursor
state and the live shutdown getter must remain per-service. Their code
is unchanged by this channel-folder move.
- This PR depends on #15844. Merge and retarget in stack order.

## Model Used

OpenAI Codex, GPT-6 family, with reasoning and repository tools. The
exact runtime model ID and context-window size are not exposed in this
session. No separate agent was used.

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have searched GitHub for duplicate or related PRs and linked
them above
- [x] I have either (a) linked existing issues with `Fixes: #` / `Closes
#` / `Refs #` OR (b) described the issue in-PR following the relevant
issue template
- [x] I have not referenced internal/instance-local Paperclip issues or
links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip`
URLs)
- [x] My branch name describes the change (e.g. `docs/...`, `fix/...`)
and contains no internal Paperclip ticket id or instance-derived details
- [ ] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [x] All Paperclip CI gates are green
- [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups
- [x] I will address all Greptile and reviewer comments before
requesting merge

---------

Co-authored-by: Paperclip <noreply@paperclip.ing>
2026-10-12 09:49:34 -05:00
DottaandPaperclip 5a72061ccc refactor(chat): extract publication replacement decisions (#15844)
## Thinking Path

> - Paperclip publishes agent progress and results back to chat.
> - Some updates replace an earlier message while others need a new
message.
> - The current outbound link and task generation determine that
authority.
> - These decisions are spread through the large chat service.
> - This PR groups publication replacement and supersession decisions in
one module.
> - Reviewers can follow those decisions without reading provider
transport code.

## Linked Issues or Issue Description

Refs #15836, #15834 and #15823. Stack slice 4 of 5, based on
`codex/chat-identity-links`.
Merge the predecessor first, then retarget this PR. Do not merge the
stack out of order.

Stack order: #15823 (provider messages) → #15834 (resource
reconciliation) → #15836 (identity links) → #15844 (publication
replacement) → #15845 (failed-run retries). GitHub native stack merging
preserves this order and automatically restacks the remaining branches.

## What Changed

- Extract shared publication replacement and supersession queries from
the large service.
- Keep exact outbound ownership, run/wake scope, consumed progress,
interaction replacement and retained-source authorization together.
- Put the iMessage typing-versus-progress policy in
`imessage-photon/publications.ts`.
- Preserve endpoint lookup timing and all ownership query bodies. The
multi-provider close allowlist remains shared dispatch metadata.
- Restack onto the revised #15836 and record why this boundary remains
mostly shared.

## Verification

- The same 49 existing publication and Photon integration cases passed
before and after the provider-policy move. Other cases were excluded by
the filter.
- Cases cover close-owned progress, ambiguous delivery, interleaved
Slack control, Telegram confirmation, FIFO replacement and Photon
channel behavior.
- Server typecheck, module-boundary and whitespace checks passed. Only
the iMessage predicate/reason moved; ownership queries are unchanged.
- Historical server shard 2 hit a cleanup deadlock; its unchanged
[isolated rerun
passed](https://github.com/paperclipai/paperclip/actions/runs/38134431077/job/114457999409).
[Original
failure](https://github.com/paperclipai/paperclip/actions/runs/38134431077/job/114455332022).
- Tests use disposable databases and fixture provider transports, not
live third-party execution.

- Fresh Greptile review is 5/5 on
`8e2da97b6dc11eb446128b61c789edb529c50d5a`, with a successful check and
no open review threads.
- Final-stack `pnpm -r typecheck` and `pnpm build` passed at
`57ec5ba94aecd860471f9b14db46f99120c7c790`.
- Historical pre-restack CI failed on `ci / General tests (server
(11/12))` and its aggregate `ci / verify`. All 1,255 tests passed, but
worker-exit cleanup in unchanged
`server/src/__tests__/setup-supertest.ts:32` failed with EACCES removing
a temporary `paperclip-vitest-home-*` directory. The [original
job](https://github.com/paperclipai/paperclip/actions/runs/38256549828/job/114836065382)
and the [single unchanged
rerun](https://github.com/paperclipai/paperclip/actions/runs/38256549828/job/114839735273)
failed the same way. No further reruns were requested. After GitHub
automatically restacked the branches, the full cumulative run on #15845
passed this server shard. This middle PR uses the repository’s
policy-only stack CI scope; the top PR runs all suites.
- The final full-local-suite outcome for this cumulative stack is
recorded in #15845; do not infer that gate from the focused tests above.

- Merge verification on the restacked tree: 118 focused identity,
publication, Photon and retry integration tests passed; server typecheck
and module-boundary checks passed. GitHub’s rebased trees exactly match
the previously reviewed file contents.

- All current-head required checks passed on
`8e2da97b6dc11eb446128b61c789edb529c50d5a`: policy CI (middle-stack
scope; full cumulative suites passed on #15845); Greptile 5/5 with no
unresolved threads.

## Risks

- Splitting shared ownership queries per channel would duplicate
authorization rules. They remain in the shared module.
- Preserve the issue-to-run lock order and retained-source callback. The
factory creates no worker or mutable state.
- This PR depends on #15836. Merge and retarget in stack order.

## Model Used

OpenAI Codex, GPT-6 family, with reasoning and repository tools. The
exact runtime model ID and context-window size are not exposed in this
session. No separate agent was used.

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have searched GitHub for duplicate or related PRs and linked
them above
- [x] I have either (a) linked existing issues with `Fixes: #` / `Closes
#` / `Refs #` OR (b) described the issue in-PR following the relevant
issue template
- [x] I have not referenced internal/instance-local Paperclip issues or
links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip`
URLs)
- [x] My branch name describes the change (e.g. `docs/...`, `fix/...`)
and contains no internal Paperclip ticket id or instance-derived details
- [ ] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [x] All Paperclip CI gates are green
- [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups
- [x] I will address all Greptile and reviewer comments before
requesting merge

---------

Co-authored-by: Paperclip <noreply@paperclip.ing>
2026-10-12 09:49:34 -05:00
DottaandPaperclip de79750939 refactor(chat): extract identity linking (#15836)
## Thinking Path

> - Paperclip connects provider identities to company members.
> - A confirmed identity determines whose permissions apply to chat
messages.
> - Token consumption and membership checks must remain atomic.
> - These operations currently share the large chat channel service.
> - This PR moves identity linking into one module with explicit runtime
callbacks.
> - Reviewers can inspect the complete identity-link flow together.

## Linked Issues or Issue Description

Refs #15834 and #15823. Stack slice 3 of 5, based on
`codex/chat-resource-reconciliation`.
Merge the predecessor first, then retarget this PR. Do not merge the
stack out of order.

Stack order: #15823 (provider messages) → #15834 (resource
reconciliation) → #15836 (identity links) → #15844 (publication
replacement) → #15845 (failed-run retries). GitHub native stack merging
preserves this order and automatically restacks the remaining branches.

## What Changed

- Extract company-scoped identity linking into shared
`identity-links.ts`.
- Move Slack connect receipt queries, access requests and
confirmation-notice staging into `slack/identity-links.ts`.
- Move GitHub identity fields into `github/identity-links.ts`.
- Preserve shared token consumption, link locks, membership checks and
revocation.
- Stage the Slack notice inside the original confirmation transaction.
Schedule delivery after commit. Keep runtime and public URL callbacks
live.
- Restack on the revised resource PR #15834 and record the architectural
reassessment in the plan.

## Verification

- Four existing service integration cases passed before and after. The
Slack connect case covers discovery, preview, access requests, duplicate
requests, member confirmation, provider notice, consumed tokens and
endpoint isolation.
- Receipt queries, the access-request transaction and notice payload
match the previous implementation with explicit parameter substitutions.
- Server typecheck, module-boundary and whitespace checks passed.
- These are local database and fixture transport tests, not live Slack
execution.

- Fresh Greptile review is 5/5 on
`7b44962f09fe8043c77ed40e05f761f31c64b33c`, with a successful check and
no open review threads.
- Final-stack `pnpm -r typecheck` and `pnpm build` passed at
`57ec5ba94aecd860471f9b14db46f99120c7c790`.
- All CI checks passed on `62ee045a4728da2d756be3d2e40d13e592a0b5a9`.
- The [original workspace
shard](https://github.com/paperclipai/paperclip/actions/runs/38256203686/job/114834873234)
timed out waiting for the CLI import/export test server health endpoint.
Its [single unchanged rerun
passed](https://github.com/paperclipai/paperclip/actions/runs/38256203686/job/114838954081).
The original timeout remains part of the evidence.
- The final full-local-suite outcome for this cumulative stack is
recorded in #15845; do not infer that gate from the focused tests above.

- Merge verification on the restacked tree: 118 focused identity,
publication, Photon and retry integration tests passed; server typecheck
and module-boundary checks passed. GitHub’s rebased trees exactly match
the previously reviewed file contents.

- All current-head required checks passed on
`7b44962f09fe8043c77ed40e05f761f31c64b33c`: full CI; Greptile 5/5 with
no unresolved threads.

## Risks

- Confirmation must retain transaction and token ownership. The Slack
helper receives the existing transaction and stages the same effect;
scheduling remains after commit in the shared coordinator.
- This PR depends on #15834. Merge predecessors and retarget before
merging this PR.

## Model Used

OpenAI Codex, GPT-6 family, with reasoning and repository tools. The
exact runtime model ID and context-window size are not exposed in this
session. No separate agent was used.

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have searched GitHub for duplicate or related PRs and linked
them above
- [x] I have either (a) linked existing issues with `Fixes: #` / `Closes
#` / `Refs #` OR (b) described the issue in-PR following the relevant
issue template
- [x] I have not referenced internal/instance-local Paperclip issues or
links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip`
URLs)
- [x] My branch name describes the change (e.g. `docs/...`, `fix/...`)
and contains no internal Paperclip ticket id or instance-derived details
- [ ] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [x] All Paperclip CI gates are green
- [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups
- [x] I will address all Greptile and reviewer comments before
requesting merge

---------

Co-authored-by: Paperclip <noreply@paperclip.ing>
2026-10-12 09:49:33 -05:00
DottaandPaperclip 848e659bc6 refactor(heartbeat): extract session preparation (#15966)
## Thinking Path

> - Paperclip is the open source app people use to manage AI agents for
work.
> - Heartbeat execution prepares a provider session before dispatch.
> - The same executor also owns workspace setup, admission, cleanup, and
recovery.
> - Session freshness and compaction form a separate responsibility with
explicit inputs and results.
> - This pull request moves those two session phases into one module and
keeps their order around workspace preparation.
> - The benefit is a shorter executor with unchanged session behavior.

## Linked Issues or Issue Description

**What existing behavior does this improve?**
Maintenance of heartbeat execution. This continues the extraction series
after #15872.

**Current behavior**
`heartbeat.ts` has 4,989 lines and 206,650 bytes. Session config
fingerprints, resume selection, credential compatibility, and compaction
are embedded in the executor.

**Proposed behavior**
The executor calls `prepareHeartbeatSession` before workspace
preparation and `resolveHeartbeatAdapterSession` after it.
`heartbeat.ts` has 4,740 lines and 195,258 bytes. The new cohesive
module has 385 lines and 19,518 bytes.

**Reason and benefit**
A reviewer can find session policy in one module. Runtime acquisition,
admission gates, and cleanup remain in the executor. Related open work
includes #15787 and #15142; this PR does not change either policy.

**Breaking changes**
None intended. Existing public helper exports remain available.

## What Changed

- Move 267 lines into
`server/src/services/heartbeat/session-preparation.ts` with typed task,
config, workspace, and session inputs.
- Keep config fingerprints and context mutations on the same objects.
Return compaction and adapter-session results to existing consumers.
- Add four real-PostgreSQL characterization tests through heartbeat
wakeup and adapter dispatch.
- Document the two session preparation phases.

## Verification

- Before extraction: four new characterization tests pass; 180 existing
workspace/session tests pass.
- After extraction: 205 tests pass across session preparation,
workspace/session policy, managed-account session compatibility, and
accepted-plan refresh. No skips.
- `pnpm -r typecheck` and `pnpm build` pass.
- Normalized syntax comparison: both moved blocks and the reconstructed
executor, including public exports, match the base.
- Isolated browser acceptance: 2/2 pass. A real process worker completes
after automatic recovery; persistent timeouts stop after three attempts.
Both terminal states survive reload.
- All hosted CI gates pass on `d33f8506a7`, including the complete test
shards, typecheck, build, and browser suites. The duplicate local `pnpm
test:run` was interrupted after hosted CI passed; it is not claimed as a
full local pass.
- Greptile: 5/5 on this head, with no review threads.

## Risks

- Session freshness can alter provider context if a dependency is
omitted. Typed inputs and passing-before/passing-after dispatch tests
cover unchanged resumes, model changes, tool refresh, and compaction.
- The module acquires no runtime resource. Workspace preparation still
occurs between the two phases.
- Live external providers are not exercised; browser acceptance uses a
real process fixture in a disposable app.

## Model Used

OpenAI Codex, based on GPT-6, assisted with reasoning, code edits, tool
execution, and verification. The exact deployment model ID and
context-window size are not exposed in this session.

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have searched GitHub for duplicate or related PRs and linked
them above
- [x] I have either (a) linked existing issues with `Fixes: #` / `Closes
#` / `Refs #` OR (b) described the issue in-PR following the relevant
issue template
- [x] I have not referenced internal/instance-local Paperclip issues or
links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip`
URLs)
- [x] My branch name describes the change (e.g. `docs/...`, `fix/...`)
and contains no internal Paperclip ticket id or instance-derived details
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [x] All Paperclip CI gates are green
- [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups
- [x] I will address all Greptile and reviewer comments before
requesting merge

Co-authored-by: Paperclip <noreply@paperclip.ing>
2026-10-12 09:40:09 -05:00
DottaandPaperclip 3a213ab987 refactor(chat): extract resource reconciliation and availability (#15834)
## Thinking Path

> - Paperclip manages AI agents and their work.
> - Chat resources control which provider destinations can admit that
work.
> - Inventory updates and lifecycle callbacks must preserve company
scope and operator choices.
> - These rules share a large service with runtime and credential
ownership.
> - This PR extracts resource reconciliation and its availability
transaction.
> - Reviewers can inspect resource changes together while the service
retains runtime control.

## Linked Issues or Issue Description

Refs #15823 (merged). Slice 2 of 5 now targets `master`. Remaining
order: #15834 → #15836 → #15844 → #15845.

## What Changed

- Extract shared resource inventory, audited selection and availability
settlement from the large service.
- Put GitHub repository parsing, rename/transfer repair, webhook
recovery and listing in `github/resources.ts`.
- Put Telegram group migration in `telegram/resources.ts`, using the
coordinator's existing transaction and timestamp.
- Put Slack labels, Teams IDs and Photon participant parsing in their
channel folders.
- Keep lease assertions, delivery settlement and the resource upsert
between Telegram migration steps in the shared coordinator.
- The shared module is 598 lines; provider resource modules total 409
lines. Update the dated plan with this reassessment.

## Verification

- On updated master, 15 existing resource integration cases and one
Telegram migration case passed before this folder move. The same 16
cases passed after. Other cases were excluded by the filter.
- Eight moved declarations and three transaction blocks match the prior
implementation. The GitHub provider guard remains in the caller.
- Server TypeScript, module-boundary and whitespace checks passed.
Rebuilt plugin SDK types after rebasing onto current master.
- Historical browser shard 8 timed out on inbox retry; its unchanged
[rerun
passed](https://github.com/paperclipai/paperclip/actions/runs/38134430238/job/114457529315).
[Original
failure](https://github.com/paperclipai/paperclip/actions/runs/38134430238/job/114455332214).
- Tests use local disposable databases and fixture provider transports.
No live third-party execution is claimed.

- Fresh Greptile review is 5/5 on
`e914f532ca66c429125492c1723df38afc6e13d7`, with a successful check and
no open review threads.
- Final-stack `pnpm -r typecheck` and `pnpm build` passed at
`57ec5ba94aecd860471f9b14db46f99120c7c790`.
- All CI checks passed on `e914f532ca66c429125492c1723df38afc6e13d7`.
- The final full-local-suite outcome for this cumulative stack is
recorded in #15845; do not infer that gate from the focused tests above.

## Risks

- Resource identity and migrations depend on lock and write order.
Provider modules use the original transaction; statement order and
credential fencing remain unchanged.
- Shared selection and availability still contain provider dispatch
predicates. They coordinate common state transitions and should remain
shared.
- Full local tests and current-revision CI remain required for a green
handoff.

## Model Used

OpenAI Codex, GPT-6 family, with reasoning and repository tools. The
exact runtime model ID and context-window size are not exposed in this
session. No separate agent was used.

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have searched GitHub for duplicate or related PRs and linked
them above
- [x] I have either (a) linked existing issues with `Fixes: #` / `Closes
#` / `Refs #` OR (b) described the issue in-PR following the relevant
issue template
- [x] I have not referenced internal/instance-local Paperclip issues or
links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip`
URLs)
- [x] My branch name describes the change (e.g. `docs/...`, `fix/...`)
and contains no internal Paperclip ticket id or instance-derived details
- [ ] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [x] All Paperclip CI gates are green
- [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups
- [x] I will address all Greptile and reviewer comments before
requesting merge

---------

Co-authored-by: Paperclip <noreply@paperclip.ing>
2026-10-12 09:39:51 -05:00
DottaandPaperclip 2503d8dda4 Retain source projects and repository receipt origins
Fence configured folder owners before capture and publication. Preserve valid task continuation after configuration removal while keeping revoked or deleted project scopes private. Record origin only at new receipt creation to distinguish unavailable independent checkouts from legacy aliases.

Co-Authored-By: Paperclip <noreply@paperclip.ing>
2026-10-12 09:12:52 -05:00
DottaandPaperclip 93b1a95969 Authorize file roots and preserve explicit child sources
Resolve repository publishers by physical provenance instead of repository name. Check file APIs against retained and current folder sources, and preserve explicit child source overrides before parent binding inheritance.

Co-Authored-By: Paperclip <noreply@paperclip.ing>
2026-10-12 08:53:31 -05:00
DottaandPaperclip 4fad5c0db1 Merge latest master task context and chat normalization
Preserve task workspace source selection around extracted heartbeat context preparation.

Co-Authored-By: Paperclip <noreply@paperclip.ing>
2026-10-12 08:24:05 -05:00
DottaandPaperclip cf5987ccb1 Preserve shared-root denial in task workspace API fixture
Separate unrelated task files before testing the positive source-only repository path.

Co-Authored-By: Paperclip <noreply@paperclip.ing>
2026-10-12 08:22:18 -05:00
DottaandPaperclip fb21a3f30a refactor(chat): extract provider message normalization (#15823)
## Thinking Path

> - Paperclip manages AI agents and keeps their work attached to company
tasks.
> - Chat providers deliver messages and corrections into those tasks.
> - The chat channel service has grown to 39,155 lines.
> - Provider message normalization has no database or worker ownership
of its own.
> - This pull request moves that responsibility into one module while
preserving the service body.
> - Reviewers can now find provider identities, timestamps, and edit
revisions together.

## Linked Issues or Issue Description

**What existing behavior does this improve?**

Maintenance of inbound chat message normalization in the server.

**Subsystem affected**

Server chat channels.

**Current behavior**

Provider message parsers and identity rules share a 39,155-line file
with credentials, runtime ownership, database admission, and publication
workers.

**Proposed behavior**

Move provider message normalization into
`chat-channels/provider-messages.ts`. Keep service exports and runtime
behavior unchanged.

**Reason and benefit**

This creates a clear first boundary for an incremental refactor. A dated
plan ranks the next four larger extractions. No duplicate chat refactor
was found in the GitHub title search.

**Breaking changes**

None intended. No schema, endpoint, transport, or public service API
changes.

Stack order: #15823 (provider messages) → #15834 (resource
reconciliation) → #15836 (identity links) → #15844 (publication
replacement) → #15845 (failed-run retries). Merge in this order;
retarget each child after its predecessor lands.

## What Changed

- Move provider message parsing into
`chat-channels/telegram/messages.ts`, `slack/messages.ts`,
`discord/messages.ts`, `microsoft-teams/messages.ts` and
`github/messages.ts`.
- Keep shared actor normalization, actor data and the inbound text limit
in `chat-channels/message-lifecycle.ts`. These six modules total 566
lines / 19,534 bytes.
- Import provider modules directly. Follow this provider-folder
convention for future extractions.
- Preserve exact actor IDs, edit hashes, timestamp provenance, and
Telegram message identity rules.
- Narrow two input types to the Teams parser method and the retained
delivery fields actually read.
- Reduce `chat-channels.ts` from 39,155 lines / 1,509,090 bytes to
38,643 lines / 1,491,703 bytes.
- Record five ranked extraction candidates and verification evidence in
the dated plan.

## Verification

- The original extraction passed complete CI and 5/5 review at
`cbba30a526`. Those results are historical; the updated head is
`90ac517e6c310c8cf194dbbd668006f740e58f3a`.
- Structural comparison: all 21 moved declarations match the base after
normalizing exports and two type-only changes. All remaining non-import
declarations, including the complete service body, match the base.
- Provider-folder update: the same 48 public service integration cases
passed locally before and after the move on PR #15823. They cover
Slack/Discord revision identity, Teams edits, GitHub edits, Telegram
rich messages and provider chronology.
- All 22 message declarations retain identical bodies; the service
changes imports only. The four dependent extractions rebased without
conflicts.
- Final-stack workspace `pnpm -r typecheck` passed. Module-boundary and
whitespace checks passed.
- Final-stack `pnpm build` passed. The fresh `pnpm test:run` was
interrupted after PostgreSQL startup failures recurred. An isolated
`native-status-arbiter-corpus.test.ts` run failed during database
initialization after five attempts; all 45 tests skipped. All 32 host
shared-memory slots were occupied. The full local gate remains
unverified; only the task-owned run was stopped.
- Greptile rated updated head `90ac517e6c310c8cf194dbbd668006f740e58f3a`
5/5 with no inline review threads.
- Updated-head CI passed: 53 successful checks and two skipped checks,
including all chat integration shards, typecheck, build and browser
suites.
- Tests use disposable databases and fixture provider transports. No
live third-party execution is claimed.

## Risks

- A wrong module import or changed revision identity could affect
message admission. Existing service-path tests and the declaration
comparison cover those risks.
- Authentication, company-scoped transactions, leases, background
workers, and shutdown remain in the original service.
- The service closure remains large. Resource reconciliation is the
recommended next extraction.

## Model Used

OpenAI Codex, GPT-6 family, with reasoning, local code execution, and
repository tools. The exact runtime model ID and context-window size are
not exposed in this session. No separate planning or review agent was
used.

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have searched GitHub for duplicate or related PRs and linked
them above
- [x] I have either (a) linked existing issues with `Fixes: #` / `Closes
#` / `Refs #` OR (b) described the issue in-PR following the relevant
issue template
- [x] I have not referenced internal/instance-local Paperclip issues or
links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip`
URLs)
- [x] My branch name describes the change (e.g. `docs/...`, `fix/...`)
and contains no internal Paperclip ticket id or instance-derived details
- [ ] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [x] All Paperclip CI gates are green
- [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups
- [x] I will address all Greptile and reviewer comments before
requesting merge

---------

Co-authored-by: Paperclip <noreply@paperclip.ing>
canary/v2026.1012.0-canary.6
2026-10-12 08:21:46 -05:00
DottaandPaperclip ce15fe7c73 refactor(heartbeat): extract task context preparation (#15872)
## Thinking Path

> - Paperclip is the open source app people use to manage AI agents for
work.
> - Heartbeat execution prepares task context before it selects an
environment and starts an adapter.
> - This preparation still occupied 319 lines inside the executor after
the earlier extractions.
> - It combines continuation summaries, comments, prompt variants,
communication guidance, and redaction.
> - This pull request moves that responsibility into one typed module
under `services/heartbeat/`.
> - The executor keeps admission, resource ownership, dispatch, and
cleanup ordering together.
> - The result makes the preparation phase easier to find and test
without changing execution behavior.

## Linked Issues or Issue Description

Refs #15825, #15807. This continues the incremental heartbeat extraction
series. A search found no duplicate task-context extraction.

**What existing behavior does this improve?**
Maintenance and review of heartbeat task context preparation.

**Current behavior**
The executor assembles prompts and trust-filtered context inline. This
hides its execution phases among preparation details.

**Proposed behavior**
Call `prepareHeartbeatTaskContext` at the same point in execution.
Preserve statement order, prompt contents, public exports, and the
shared run context object.

## What Changed

- Move task context assembly to
`server/src/services/heartbeat/task-context.ts`. Inputs group task
state, policy, and two existing service methods. Results preserve the
continuation and wake values used by later runtime selection and
dispatch.
- Keep company-scoped loading, quarantined-content filtering, secret
redaction, and revision hashing in their original order. Add no
execution resource acquisition.
- Add four public-path integration tests before the move. Cover prompt
variants and redacted revisions, quarantined summaries/comments, a
mixed-company wake batch, and stale caller fields.
- Extend the real process worker in the opt-in browser suite to check
persisted prompt variants and the description revision before it
completes its task.
- Update the module map and acceptance-test documentation.
- Reduce `heartbeat.ts` from 5,314 lines / 220,784 bytes to 4,989 lines
/ 206,650 bytes. The new module has 376 lines / 15,912 bytes.

## Verification

- Before the move: 11 existing prompt tests and all four new
characterization tests passed against the inline implementation.
- Normalized syntax comparison passed for all 319 moved lines and the
remaining orchestrator, including public exports. Imports and the typed
boundary were reviewed separately.
- `pnpm -r typecheck` passed.
- `pnpm build` passed.
- The clean post-move focused run passed all 26 tests in five files,
with no skips: task-context characterization, task-markdown, Slack
invitation, accepted-plan workspace refresh, and run-preparation.
- The local `pnpm test:run` attempt was interrupted after database
failures while the Mac exhausted its shared-memory slots. All 15
affected native warm-ownership database cases passed in an isolated
rerun after the browser instance stopped; the other 666 cases in that
file were excluded by the test-name filter. The interrupted command is
not a full-suite pass. Full CI passed on
`6bf86cfdc07e7fe34015f7b719218639f4232510`: 55 successful checks and two
optional Storybook checks skipped. Greptile reviewed the latest commit
at 5/5; its one earlier worker-test finding is fixed and resolved.
- Browser E2E passed both scenarios on the final code: persistent
timeouts stop after three runs and survive reload; one timeout recovers
without manual Retry, verifies task-context prompt variants/revision and
preserved workspace files in a real process, then completes through the
run-scoped API. The first recovery attempt exposed an incorrect new test
assertion because the fixture title equals its description. The worker
now checks the description section specifically; the corrected recovery
scenario passed in 55.9 seconds. The original failure trace was
preserved. These tests use a deterministic process adapter and make no
live model calls.

## Risks

This is a behavior-preserving extraction. The main risks are changed
closure bindings, missing return values, or changed preparation order.
Typed inputs, public-path tests, and syntax comparison cover those
risks. The run context is still the same mutable object. The helper
acquires no leases or processes. It introduces no schema, API, or prompt
policy changes.

The first post-move database run skipped cases due to host resource
exhaustion. All 26 focused cases passed on the subsequent clean run.
Browser E2E passed after the worker assertion fix. The full local suite
remains incomplete. All 15 native warm-ownership database cases passed
on their isolated rerun; The full CI test suite passed on the final
commit.

## Model Used

OpenAI Codex, based on GPT-6, with reasoning, repository inspection,
code execution, and test tools. The host does not expose the exact
deployment model ID or context-window size.

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have searched GitHub for duplicate or related PRs and linked
them above
- [x] I have either (a) linked existing issues with `Fixes: #` / `Closes
#` / `Refs #` OR (b) described the issue in-PR following the relevant
issue template
- [x] I have not referenced internal/instance-local Paperclip issues or
links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip`
URLs)
- [x] My branch name describes the change (e.g. `docs/...`, `fix/...`)
and contains no internal Paperclip ticket id or instance-derived details
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [x] All Paperclip CI gates are green
- [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups
- [x] I will address all Greptile and reviewer comments before
requesting merge

---------

Co-authored-by: Paperclip <noreply@paperclip.ing>
2026-10-12 08:15:21 -05:00
DottaandPaperclip f29be9b58e Merge origin/master into task workspace ownership
Co-Authored-By: Paperclip <noreply@paperclip.ing>
2026-10-12 08:12:12 -05:00
DottaandPaperclip e1863d4fe7 Fence shared workspace readers and preserve projectless chat admission
Retain root source and reader provenance, recheck publication access, keep plain agent transfers independent of repository discovery, and resolve organizational projects without filesystem sources.

Co-Authored-By: Paperclip <noreply@paperclip.ing>
2026-10-12 08:12:05 -05:00
DottaandPaperclip 762d680daf feat(ui): upload files directly in task artifacts (#15964)
## Thinking Path

> - Paperclip helps people manage agent work and retain its context.
> - Task documents and attachments keep that context with the task.
> - The Artifacts panel showed output but could not accept a new file.
> - Uploading through a message can require resuming a paused task.
> - Existing document and attachment APIs can save files directly.
> - This PR adds direct uploads and a drop target to the task panel.
> - People can add context while keeping work paused and unassigned.

## Linked Issues or Issue Description

**What existing behavior does this improve?**
The task Artifacts panel and its existing document and attachment APIs.

**Subsystem affected**
ui/ — React board UI. No server, schema, or API changes.

**Current behavior**
The Artifacts panel cannot upload a file. It also excludes files
uploaded by people. The message composer can require a task to resume
before it submits attachments.

**Proposed behavior**
Use the upload icon or drop files anywhere in the open Artifacts panel.
The target includes the header, padding, and existing cards. Files save
directly to the task without a message or a pause change.

**Reason and benefit**
People can prepare a handoff on a paused, unassigned task without
starting agent work. Markdown becomes a task document. Other supported
files use attachment storage.

**Breaking changes**
Files from people now appear in Artifacts alongside agent output.
Promoted attachments still appear once. A repeated Markdown filename
creates a separate document instead of replacing an existing revision.
Existing APIs and limits stay the same.

**Additional context**
Related upload API work: Refs #7472 and Refs #7248. This PR adds the
missing task-panel entry point. ROADMAP.md lists Artifacts and Work
Products as available; this is a scoped UI improvement.

## What Changed

- Add an upload icon with no visible label or background.
- Accept file drops across the full task panel, including the desktop
portal header and mobile tabs.
- Show per-file progress and inline Retry and Dismiss actions.
- Import Markdown under a new document key and retain existing
revisions.
- Include files from people in Artifacts and dedupe promoted
attachments.
- Add component and task-journey stories for empty, populated, loading,
error, mobile, and drag-over states.
- Add real browser tests for persistence, pause preservation, duplicate
document names, full-panel drops, and partial failure recovery.

## Verification

- Five Playwright tests passed against an isolated instance started by
the source `test-drive` command. The document API, attachment storage,
pause holds, downloads, and task UI were real. Only the explicit upload
failure was injected.
- The browser tests verified desktop and mobile uploads, document
reading, persistence after reload, no task comments or runs, header
drops, preservation of original and hidden internal documents, reserved
filename handling, and upload retry.
- 163 focused UI tests passed.
- `pnpm -r typecheck` passed.
- `pnpm build` passed.
- `pnpm check:token-gates` passed.
- The full Vitest suite is running after repair of an exhausted local
PostgreSQL shared-memory pool. The initial run failed to initialize
PostgreSQL. Six unattached segments had no living creator or last-user
process; removing them restored free slots.
- CI and the current-head Greptile review are pending.

## Risks

- Artifacts now includes user files, so existing tasks can show more
cards.
- Uploads retain the server's authorization, file-type, size, and
revision checks. No migration is needed.
- Binary attachment uploads use the existing API. A transport failure
with an unknown save outcome can retain the existing API's retry
ambiguity.

## Model Used

OpenAI GPT-6 through Codex. The exact runtime snapshot ID and
context-window size were not exposed to this session. The model used
repository inspection, code editing, shell tools, and browser
automation.

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have searched GitHub for duplicate or related PRs and linked
them above
- [x] I have either (a) linked existing issues with `Fixes: #` / `Closes
#` / `Refs #` OR (b) described the issue in-PR following the relevant
issue template
- [x] I have not referenced internal/instance-local Paperclip issues or
links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip`
URLs)
- [x] My branch name describes the change (e.g. `docs/...`, `fix/...`)
and contains no internal Paperclip ticket id or instance-derived details
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [ ] All Paperclip CI gates are green
- [ ] Greptile is 5/5 with no open P2s, recommendations, or follow-ups
- [x] I will address all Greptile and reviewer comments before
requesting merge

---------

Co-authored-by: Paperclip <noreply@paperclip.ing>
2026-10-12 08:11:31 -05:00
DottaandPaperclip 88b7bbb5e2 Stabilize task lifecycle browser fixtures (#15878)
## Thinking Path

> - Paperclip manages agents and their tasks.
> - Browser and runner tests check task recovery and user actions.
> - Some fixtures act before a prior request or run has settled.
> - Those races can report a product failure before the intended
assertion runs.
> - This PR binds each check to the exact request, run, or geometry
snapshot it needs.
> - The tests retain their existing budgets and negative assertions.

## Linked Issues or Issue Description

Refs: #15813, #15804.

The draft stack is master → [fixture prerequisite
#15878](https://github.com/paperclipai/paperclip/pull/15878) → [runtime
prerequisite
#15880](https://github.com/paperclipai/paperclip/pull/15880) → [Boat
core #15813](https://github.com/paperclipai/paperclip/pull/15813) → [UI
#15804](https://github.com/paperclipai/paperclip/pull/15804). GitHub
confirms 5, 63, 97, and 75 changed files respectively, each below the
100-file limit. Existing commits and PR URLs remain intact. [Historical
evidence](https://github.com/paperclipai/paperclip/tree/5909bfac9fa41405beb3fe8a65253dc28ba52835/doc/plans/assets/2026-10-10-boat)
remains pinned to its original commit; current proof files stay with the
UI PR.

This is the test-only prerequisite extracted from the experimental Boat
work. It contains five existing test-file changes. It does not add the
Boat adapter or change task admission.

## What Changed

- Wait for the exact signoff fixture run and each replacement run to
succeed before applying the next stage decision.
- Wait for the inbox Retry response for the exact failed run before
navigating away.
- Compare task planning time with the first run that actually started,
instead of assuming the first list item started.
- Read the touch target, container, and scroll position in one browser
evaluation. Keep strict containment and native gesture checks.
- Bind the native recovery fixture to its disposable fake Codex
executable so installed provider binaries cannot override it.

## Verification

Draft branch: `codex/boat-fixture-prerequisite`, commit
`e318850909c0777565b43644a4d8114c6006da60`. Base: master
`e733bddc45e00efb1819fffa8677f7b0d07802c5`. Five changed files.

The isolated fixture-plus-runtime stack passed 24 browser cases. Six
legacy recovery cases could not reach their assertions because the
fixture requires embedded PostgreSQL metadata. A normal embedded
PostgreSQL attempt then failed during cluster setup on this host. These
are not six passing cases. No test seam, timeout increase, or
product-database fixture was used.

The fixture-only commit has not yet had a separate complete local
browser run. All six legacy cases subsequently passed on this exact
fixture commit in PR CI browser shard 8 (20/20 total, job114470999277).
The original local setup failures remain recorded. The full-stack
typecheck/build results belong to the assembled fixture-plus-runtime
tree and are not claimed as independent qualification of this smaller
commit.

Review the exact run/request filters and the unchanged rejection
assertions. Run the four changed Playwright specs and the
native-session-resume suite through the repository's normal fixture
setup. At 13:03:24 UTC, this exact head had 53 successful checks and two
skips, with no pending checks or failures. All eight browser shards
passed. Greptile is 5/5 on the exact head with no unresolved threads.

[Exact-head legacy browser
proof](https://github.com/paperclipai/paperclip/blob/9eacca2c5321bb63f061eef4bb775b6951d5846d/doc/plans/assets/2026-10-10-boat/evidence/prerequisite-legacy-browser-ci-proof.json).

Feature acceptance stays in the downstream report. Deployment29 verified
`05f3725af838b5a074707df1d6ed1e193bdfe49e` at 12:23:23.944 UTC. Native
Claude cold execution passed at 12:39:57.782 after 14m56s of first-use
preparation. Warm continuation passed at 12:42:09.943 with the same
owner, boot and session identities. Normal retirement and archive
followed. The ordinary saved post-idle turn then failed: its primary
attempt reported the closed `LINK_COUNT` module fence at
`turn_ownership_verified` (3,711ms), and same-run recovery settled
failed at 12:52:09 with identity/authority errors. Natural archive
completed at 12:52:21. Numeric link counts and their direction are not
yet proven. A narrower failure-only diagnostic and a bounded read-only
probe are under review; neither establishes a fix for this live failure.
Prior staging27/28 failures remain preserved. Local complete lifecycle
passes and staging Codex/computer/HMR passes remain separate
source-bound evidence. No session, quarantine, provider stop or
migration history was reset. These live observations do not qualify this
prerequisite by themselves.

## Risks

- Waiting for the wrong run could hide a task race. The fixtures match
task, agent, and replacement-run identity before proceeding.
- A geometry helper could weaken touch coverage. This change preserves
containment and gesture assertions and only makes their inputs one
snapshot.
- The six legacy browser cases passed in exact-head CI; their local
PostgreSQL setup limitation remains recorded. No live Boat acceptance
result follows from this test-only change.

Documentation impact: no product command or behavior changes. This
description records fixture scope and validation limits.

## Model Used

OpenAI Codex (GPT-6 family) assisted with code, test execution, and
review. The host does not expose the exact primary model ID or context
window. The work used tools for source inspection and local execution.
Prior architecture work used `gpt-6-astra`; an independent design review
used `gpt-6.1-sol`.

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have searched GitHub for duplicate or related PRs and linked
them above
- [x] I have either (a) linked existing issues with `Fixes: #` / `Closes
#` / `Refs #` OR (b) described the issue in-PR following the relevant
issue template
- [x] I have not referenced internal/instance-local Paperclip issues or
links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip`
URLs)
- [x] My branch name describes the change (e.g. `docs/...`, `fix/...`)
and contains no internal issue id or instance-derived details
- [ ] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [x] All Paperclip CI gates are green
- [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups
- [x] I will address all Greptile and reviewer comments before
requesting merge

Co-authored-by: Paperclip <noreply@paperclip.ing>
2026-10-12 07:29:15 -05:00
DottaandPaperclip c205ab39f0 Merge origin/master and rebase feature migration sequence
Preserve upstream usage attribution and sandbox restore retry semantics alongside task workspace persistence. Regenerate task and physical-root migrations after upstream 0333 with replay-safe guards.

Co-Authored-By: Paperclip <noreply@paperclip.ing>
2026-10-12 07:17:58 -05:00
github-actions[bot]andlockfile-bot b189f586d2 chore(lockfile): refresh pnpm-lock.yaml (#15960)
Auto-generated lockfile refresh after dependencies changed on master.
This PR only updates pnpm-lock.yaml.

Co-authored-by: lockfile-bot <lockfile-bot@users.noreply.github.com>
2026-10-12 06:52:34 -05:00
DottaandPaperclip db2f00947b fix(runner): include Claude ACP in the server package (#15912)
## Thinking Path

> - Paperclip is the open source app people use to manage AI agents for
work.
> - The server ships a copy of Paperclip Runner for native agent
execution.
> - The Claude ACP bridge is a runner dependency, but it was absent from
the server package.
> - The runner resolves this bridge dynamically, so the import-based
packaging check missed it.
> - A Claude session then failed before startup and showed a generic
connection error.
> - This pull request ships the qualified bridge and reports a missing
runtime with repair steps.

## Linked Issues or Issue Description

**What happened?**

A server install with the vendored runner could not load
`@agentclientprotocol/claude-agent-acp/package.json`. The runtime test
suggested checking the model or provider connection. The task reported
an interrupted runner session.

**Expected behavior**

The server package includes its qualified Claude ACP runtime. A missing
bundled runtime reports an installation error and explains how to repair
it.

**Steps to reproduce**

1. Use a server install with the vendored runner and no Claude ACP
bridge.
2. Select the Paperclip Runner ACP harness and the Claude provider.
3. Run the runtime test or open a session.
4. Observe a missing-module failure before Claude starts.

**Paperclip version or commit**

Reproduced on `e733bddc45`. This branch is based on current master.

**Deployment mode**

Self-hosted server built from source.

Related: #15224 upgrades the Claude bridge. This PR fixes its omission
from the server package and keeps the current qualified version. A
future bridge upgrade must update the server pin too.

## What Changed

- Add Claude ACP `0.73.0` to the server dependencies and bundled
dependencies.
- Pin the qualified Claude SDK and bridge dependencies in the npm bundle
producer graph. Publish its native packages as consumer optional
dependencies instead of shipping the producer executable.
- Bind source-built vendored runners to the shared pnpm dependency store
while retaining the server manifest as the provider authority. Keep
published npm and self-rooted deployment roots unchanged.
- Include dynamically resolved Claude and Codex bridges in the vendor
dependency check.
- Preserve the missing-package category through the sidecar, Rust
transport, and native session executor. Stop automatic retries for this
installation failure.
- Show **Runtime missing** in the runtime test and task thread. Explain
the reinstall or rebuild, server restart, and runtime test steps.
- Add regression tests and document the repair procedure.

## Verification

- Red/green comparison with the production sidecar: the same
missing-package setup returns a raw require-stack error on the original
code and an actionable, non-retryable missing-runtime error on this
branch.
- The rebuilt server's vendored Claude installation probe passes using
the source-server authority selected by the launcher, without starting a
provider or making a model request.
- Focused server verification: 830 tests passed. Runner installation and
sidecar error tests: 83 passed, with 6 platform-specific skips.
Packaging tests: 28 passed. Rust transport tests: 7 passed.
- Source/deployment authority tests: 3 passed. Red/green packaging tests
include a Linux-produced Claude SDK bundle, actual npm pack, and closed
executable admission on Linux x64 and macOS ARM64/x64.
- Full UI suite: 8,113 tests passed.
- `pnpm -r typecheck` and `pnpm build` passed on the rebased branch.
- Full current-head CI passed, including all general and serialized test
lanes, Runner Rust/Vitest verification, typecheck, build, and all eight
e2e shards. Greptile reviewed `d6a2741834ff922956560f2f689382827bbaf9e0`
at 5/5 with no unresolved threads.
- Local full-suite limitation: an earlier parallel attempt hit Postgres
startup failures and timeouts; the affected server tests and a database
fixture passed in isolation. The subsequent serial `pnpm test:run` was
stopped while still running after complete CI passed. Focused local
tests, full UI tests, typecheck, and build completed as listed above.
- Token gates and `git diff --check` passed.

## Risks

- Bundling the Claude bridge increases the server package size. The
producer graph retains the qualified SDK version and existing isolation
patch. Native platform declarations move to the published server
manifest, while the runtime keeps its exact version, declared-slot,
no-follow, and executable digest checks.
- The new failure category is permanent. Operators must repair the
server installation before they retry the task.
- Existing failed runs retain their recorded error. The clearer message
applies to new runtime tests and runs.
- No database schema or migration changes.

## Model Used

OpenAI GPT-6 through Codex. The system reports the model family; the
exact deployment ID and context-window size are not exposed in this
session. Used reasoning, browser inspection, tool use, and code
execution.

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have searched GitHub for duplicate or related PRs and linked
them above
- [x] I have either (a) linked existing issues with `Fixes: #` / `Closes
#` / `Refs #` OR (b) described the issue in-PR following the relevant
issue template
- [x] I have not referenced internal/instance-local Paperclip issues or
links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip`
URLs)
- [x] My branch name describes the change (e.g. `docs/...`, `fix/...`)
and contains no internal Paperclip ticket id or instance-derived details
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [x] All Paperclip CI gates are green
- [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups
- [x] I will address all Greptile and reviewer comments before
requesting merge

---------

Co-authored-by: Paperclip <noreply@paperclip.ing>
canary/v2026.1012.0-canary.5
2026-10-12 06:51:22 -05:00
1b4c803816 fix(costs): preserve usage attribution and explain unavailable run costs (#15948)
## Thinking Path

> - Paperclip is the open source app people use to manage AI agents for
work.
> - The cost ledger records usage and controls agent budgets.
> - Some runs lose the selected model or API billing category before
their usage reaches the ledger.
> - The dashboard reports missing costs but does not identify the
affected runs or the available actions.
> - This pull request preserves usage attribution and adds a compact
view of cost gaps grouped by agent.
> - Operators can inspect runs, open agent settings, and record saved
costs without starting new agent work.

## Linked Issues or Issue Description

Refs #15634, #11938, #15879.

This follows the merged subscription reporting in #15634. The older
proposal in #11938 addresses part of ACP model attribution. This change
also rejects conflicting models across a turn, fixes credential-backed
billing capture, and explains cost gaps in the existing dashboard. The
Pi receipt recovery work in #15879 covers a separate adapter recovery
path. This PR preserves unresolved receipts and does not recover
provider usage or reprice past entries.

**What happened?**

ACP results use the requested model even when the runtime selects a
model. Native and OpenCode API runs can report unknown billing despite a
matching API credential. The dashboard shows notices without links to
the affected runs. These gaps make API and subscription totals harder to
interpret.

**Expected behavior**

Record the model selected by the runtime. Identify API billing only from
a matching credential. Keep costs unresolved when reliable usage or
pricing is absent. Show the affected agents and runs. Offer an
accounting retry only when saved evidence is ready.

**Steps to reproduce**

1. Run an ACP agent with its model left unset, or use a matching API
credential with a native or OpenCode agent.
2. Inspect the recorded model and billing category for the run.
3. Open Costs Overview for a period with unpriced usage or terminal runs
awaiting receipts.
4. Inspect the notice and try to find the affected run or the relevant
agent settings.

**Paperclip version or commit**

Current master at `657e71584a0`. The patch is rebased on that commit.

**Deployment mode**

Self-hosted server and local development. The cost detail tests use a
disposable PostgreSQL database.

## What Changed

- Preserve the runtime-selected ACP model in checkpoints and final
results. Conflicting models across one turn remain unpriced.
- Share credential-backed API billing checks across native and OpenCode
results. Keep unknown billing when the provider and credential do not
match.
- Add company-scoped cost detail and accounting retry endpoints. Board
viewers can read details but cannot retry. Agents and foreign companies
are denied.
- Limit each detail category to 25 entries. Use one consistent database
snapshot and sparse indexes matching the filters and sort order. Add the
unknown-billing count to the existing summary query.
- Replace the notice with an expandable count line. Group entries
alphabetically by agent. Show the saved blob icon, link each name to
configuration, and put run and retry links beside the date.
- Preserve estimate and unavailable-price labels on Providers and
Billers; keep retry confirmation after the resolved notice disappears.
- Fetch details only while expanded. Retain the last loaded details
after a refresh error. Retry saved accounting only; do not rerun the
agent.
- Add capture, database, authorization, UI, and Storybook coverage.
Update the implementation contract and cost reporting guide.

## Verification

- `pnpm -r typecheck` passed after rebase.
- `pnpm build` and `pnpm build-storybook` passed after rebase.
- `pnpm check:token-gates` and `git diff --check` passed.
- 1,086 focused tests passed across 17 files. These cover ACP, native
and OpenCode capture, PostgreSQL reports, route authorization, OpenAPI,
Costs UI, and existing accounting regressions.
- Desktop and mobile browser checks passed during UI review. They cover
lazy expansion, alphabetical groups, loaded blob icons, configuration
and run links, keyboard retry, and layout overflow.
- `pnpm test:run` was attempted with command-scoped
`init.defaultBranch=master` for Git fixtures. It was stopped after a
native session recovery failure reproduced on unchanged base
`657e71584a0` (`archives a damaged prior epoch before completing guarded
same-task replacement with real runnerd`). An MCP upload case failed in
the broad run but passed in isolation on both the base and PR branch.
These local limitations do not affect the 1,086 passing focused tests.
- Current-head CI is green, including all unit test lanes, serialized
server suites, runner checks, typecheck, build, policy, and eight
browser shards. Apex re-review is 5/5 on `56de60effdb`; all four
original findings are addressed and every review thread is resolved.
- PostgreSQL applies migration `0333` in the integration fixtures.
EXPLAIN ANALYZE on the production detail statements uses the new sparse
indexes behind 5,000 healthy records in each table.
- Ten provider/biller card cases cover missing and estimated prices; the
retry test covers row removal and notice unmount. A live Storybook
browser check verifies the confirmation and updated count.
- Run `pnpm storybook`. Open **Costs / Subscriptions / Cost Data Quality
Details** to inspect the production page with representative fixtures.

## Risks

- Model and billing metadata change for future runs. Estimates still
require complete usage and a supported price. No past cost amount is
rewritten.
- A missing final receipt remains unresolved for budget checks. The
display changes after fifteen minutes; that time limit never authorizes
settlement.
- Accounting retry is a write action. It retains the existing company
checks, receipt fences, idempotency, and audit logging.
- Detail reads are bounded and run only after expansion. They poll every
30 seconds while open. No provider probe or new summary query is added.
- Migration `0333` adds two partial indexes; it changes no stored cost
amounts or table columns. Index creation scans the existing tables and
may briefly block writes during deployment. No lockfile or workflow
change is included.

## Model Used

OpenAI Codex, based on GPT-6, with repository inspection, code editing,
browser checks, and test execution. The exact serving model ID,
reasoning setting, and context window were not exposed to this session.

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have searched GitHub for duplicate or related PRs and linked
them above
- [x] I have either (a) linked existing issues with `Fixes: #` / `Closes
#` / `Refs #` OR (b) described the issue in-PR following the relevant
issue template
- [x] I have not referenced internal/instance-local Paperclip issues or
links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip`
URLs)
- [x] My branch name describes the change (e.g. `docs/...`, `fix/...`)
and contains no internal Paperclip ticket id or instance-derived details
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [x] All Paperclip CI gates are green
- [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups
- [x] I will address all Greptile and reviewer comments before
requesting merge

---------

Co-authored-by: Codex <noreply@openai.com>
Co-authored-by: Paperclip <noreply@paperclip.ing>
canary/v2026.1012.0-canary.4 nightly/v2026.1012.0-nightly.0
2026-10-11 22:48:29 -07:00
4611d6e95a fix(restore): retry sandbox copy-back before holding the task for repair (#15920)
## Thinking Path

> - Paperclip is the open source app people use to manage AI agents for
work.
> - Legacy sandbox runs copy the agent's workspace files back to the
host when the run settles.
> - When this copy-back fails one time, the server keeps the sandbox and
puts a board-owned repair hold on the task.
> - The hold blocks new messages. Only an operator API runbook can clear
it. The board shows that runbook text, so users do not know what to do.
> - Many copy-back failures are transient: a dropped transfer, a
provider error, or a merge lock that another restore holds.
> - This pull request retries those failures automatically while the run
still has its merge baseline and before any host file changes.
> - The benefit is that most failures repair themselves, and the
remaining holds explain the situation in plain language.

## Linked Issues or Issue Description

Refs #14590 (related: no-replay recovery holds)

**What happened?**
A legacy sandbox run finished its work, but one workspace copy-back
attempt failed. The task then showed "Recovery needed" with
operator-only steps ("verify its exact stop receipt … record
workspaceRepairEvidence"). Messages from the user stayed saved and were
not delivered.

**What did you expect?**
Paperclip retries a transient copy-back failure automatically. If a
repair is still necessary, the task says clearly what happened and who
must act.

**Steps to reproduce**
1. Run an agent in a legacy sandbox environment.
2. Make the workspace copy-back fail one time, for example with a
dropped transfer or a held merge lock.
3. Open the task. It is blocked behind a repair hold, and new messages
wait.

**Additional context**
Separately, distinct live events can render toasts with the same title
and body (for example, two runs of the same agent that both succeed).
The toast list showed both, and the desktop app forwards each one as a
notification.

## What Changed

- `packages/adapter-utils/src/sandbox-managed-runtime.ts`: retry the
workspace copy-back up to three times in total, with a 2 s and then a 5
s backoff. A retry occurs only when the failure is `restore_failed` or
`restore_lock_timeout` and no host workspace file was written. The merge
now marks the first host write in `beforeApply`, which runs under the
merge lock before any write.
- Unsafe archives, permission failures, and failures after the merge
started writing are never retried. Each retry uses a new temp directory
and a new imported Git ref.
- New optional `workspaceRestoreRetryDelaysMs` input, so tests can
shorten the backoff. Nested repository restores receive the same value.
- `ui/src/components/ExecutionBlockerNotice.tsx`: for a workspace repair
hold, the notice now says what happened in plain language. The stored
operator runbook text moves under "Technical details".
- `ui/src/context/ToastContext.tsx`: also dedupe toasts on their visible
tone, title, and body inside the existing 3.5 s window.
- `doc/workspace-restore-locks.md`: document the automatic retry.

## Verification

- `pnpm --filter @paperclipai/adapter-utils exec vitest run
src/sandbox-managed-runtime.test.ts src/workspace-restore` (218 tests
pass). New tests cover:
  - a retry after a dropped transfer,
  - a retry after a merge-lock timeout,
  - a stop after three attempts,
- no retry for an unsafe archive, a permission failure, or a failure
after the merge started writing.
- The existing step-diagnostic test now uses failures that persist
across retries. It still expects one diagnostic per failed step.
- `pnpm --filter @paperclipai/ui exec vitest run
src/context/ToastContext.test.tsx
src/components/ExecutionBlockerNotice.test.tsx
src/context/LiveUpdatesProvider` (120 tests pass).
- `tsc --noEmit` for adapter-utils passes. `node
scripts/check-token-gates.mjs` is clean.
- Not fully run: the full adapter-utils suite has two failures in
`github-launcher*.test.ts`. They read the managed GitHub credentials of
the local sandbox environment and do not touch restore code. UI `tsc -b`
reports five errors in `PluginOrganizationSwitcher.tsx`, which is not
changed here, because the plugin SDK is not built in a fresh install.

## Risks

- A copy-back that fails before the merge can take about 7 s longer
before it reports a failure. Lock timeouts can take up to about 97 s in
total (three 30 s lock waits plus backoff). Settlement already waits for
the copy-back.
- The retry logic depends on `beforeApply` running before the first host
write in `mergeDirectoryWithBaseline`. That is true today, and a comment
marks it.
- A Git bundle import before the merge can leave unreferenced Git
objects after a retry. They are harmless, and the existing ref cleanup
still runs on each attempt.
- Content-based toast dedupe can hide a second toast with identical text
inside 3.5 s. That is the intended behavior.

## Model Used

- Claude Opus 5.5 (`claude-opus-5-5`, Anthropic) in the Claude Agent
SDK, with tool use (shell, file edit, code search) and a subagent for
code exploration.

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have searched GitHub for duplicate or related PRs and linked
them above
- [x] I have either (a) linked existing issues with `Fixes: #` / `Closes
#` / `Refs #` OR (b) described the issue in-PR following the relevant
issue template
- [x] I have not referenced internal/instance-local Paperclip issues or
links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip`
URLs)
- [x] My branch name describes the change (e.g. `docs/...`, `fix/...`)
and contains no internal Paperclip ticket id or instance-derived details
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [ ] All Paperclip CI gates are green
- [ ] Greptile is 5/5 with no open P2s, recommendations, or follow-ups
- [x] I will address all Greptile and reviewer comments before
requesting merge

🤖 Generated with [Claude Code](https://claude.com/claude-code)

---------

Co-authored-by: Paperclip Agent <agent@paperclip.ing>
Co-authored-by: Claude Opus 5.5 <noreply@anthropic.com>
canary/v2026.1012.0-canary.3
2026-10-11 21:44:11 -07:00
657e71584a fix(daytona): record provider state when lease creation hits its deadline (#15946)
## Thinking Path

> - Paperclip is the open source app people use to manage AI agents for
work.
> - Agents can run in Daytona sandboxes. The Daytona plugin acquires a
lease before each run.
> - Some acquisitions time out. The report then says
`environmentAcquisitionPhase=create` and that the whole 300 s budget was
used.
> - The Daytona SDK create timeout is equal to the acquisition budget.
The outer timer always fires first. Thus the report never shows the
state that Daytona left the sandbox in.
> - Without that state, we cannot choose a fix. A stuck snapshot pull, a
slow start, and a missing allocation need different fixes.
> - This pull request adds one bounded, read-only provider lookup at the
create deadline. It records a fixed-enum provider state in the existing
acquisition diagnostic.
> - The benefit is that the next timeout identifies where the provider
stopped. Retry, budget, and cleanup behavior do not change.

## Linked Issues or Issue Description

Refs #15736 (bounded Daytona acquisition failure observations). This
pull request extends those observations.

**What happened?**

A Daytona lease acquisition timed out with `Daytona lease acquisition
timed out; allocation cleanup is pending`. The run-failure report gave
`environmentAcquisitionPhase=create`,
`environmentAcquisitionElapsedMs=300004`, and
`environmentAcquisitionBudgetMs=300000`. The report did not show the
Daytona sandbox state. The SDK create timeout is equal to the outer
budget, so the outer timer always fires first. The SDK never reports the
stuck state.

**Expected behavior**

When creation is still pending at the deadline, the report should show
where the provider left the allocation. Examples are `pulling_snapshot`,
`starting`, `error`, or `absent`.

**Steps to reproduce**

1. Configure a Daytona environment.
2. Start a run when Daytona does not finish create and start within the
acquisition budget.
3. Inspect the setup-failure report. Only the phase, the elapsed time,
and the budget are present.

**Paperclip version or commit**

`master` at ba04968.

## What Changed

- `packages/plugins/sdk`: Add an optional `providerState` field to
`PluginEnvironmentAcquisitionDiagnostic`. The values are a fixed enum:
`absent`, `creating`, `pending_build`, `building_snapshot`,
`pulling_snapshot`, `starting`, `started`, `error`, `build_failed`,
`other`, `unavailable`. The reader omits an unknown value and keeps the
other fields. Old envelopes stay valid.
- `packages/plugins/sandbox-providers/daytona`: When the acquisition
deadline fires while `client.create` is still pending, make one
`client.get` of the provisional `paperclip-create-<attempt>` name. The
lookup has a 5 s bound, inside the host's 30 s RPC margin. Report the
state only when the name and all ownership labels match. Otherwise
report `unavailable`. A not-found error reports `absent`.
- The lookup does not delete. It does not set `observedProviderLeaseId`.
It does not change retries, budgets, or the cleanup envelope.
- After the deadline, only the timer settles the call. A late create
result cannot replace the timeout error before the lookup completes. A
test proves this guard.
- `server`: Project the value to
`run_execution.environmentAcquisitionProviderState`. It uses the same
private, run-scoped receipt as the other acquisition fields.
- `doc/observability.md`: Document the new field and its limits.

## Verification

- `cd packages/plugins/sandbox-providers/daytona && npx vitest run
--config vitest.config.ts`: 392 passed, 6 skipped.
- `npx vitest run
packages/plugins/sdk/tests/environment-creation-cleanup.test.ts
server/src/services/__tests__/run-failure-diagnostics.test.ts
server/src/__tests__/environment-acquisition-diagnostics.test.ts
server/src/__tests__/run-failure-sentry-real-sdk.test.ts
server/src/__tests__/environment-runtime.test.ts`: 302 passed, 11
skipped.
- `tsc --noEmit` passes for `packages/plugins/sdk` and
`packages/plugins/sandbox-providers/daytona`.
- New tests cover state mapping, `other` for unlisted states, `absent`,
`unavailable` for lookup failure and label mismatch, a hung lookup
bounded to 5 s, no deletion, an unchanged cleanup envelope, and a late
create that settles during the lookup.
- A mutation check removed the late-settlement guard. The late-create
test then failed.
- The local server `tsc` was killed by the sandbox memory limit. CI must
confirm the server typecheck. The server change is one line.

## Risks

- Low risk. The timeout rejection can come up to 5 s later, and only for
a create-phase deadline. The host RPC margin is 30 s.
- The lookup is one extra read-only Daytona API call for each
create-phase timeout.
- This is a diagnostic. It does not fix the upstream cause. The next
timeout report must show the state before a fix is chosen.
- This is a Sentry run-failure report change. It is not a Telemetry
change. The new value is a fixed enum. It does not contain provider IDs,
causes, URLs, or paths.

> For core feature work, check [`ROADMAP.md`](ROADMAP.md) first and
discuss it in `#dev` before opening the PR. Feature PRs that overlap
with planned core work may need to be redirected — check the roadmap
first. See `CONTRIBUTING.md`.

## Model Used

- Anthropic Claude Opus 5.5 (`claude-opus-5-5`), used through Claude
Code with tool use (shell, file edit, test runs). Context window and
reasoning configuration are set by the runtime.

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have searched GitHub for duplicate or related PRs and linked
them above
- [x] I have either (a) linked existing issues with `Fixes: #` / `Closes
#` / `Refs #` OR (b) described the issue in-PR following the relevant
issue template
- [x] I have not referenced internal/instance-local Paperclip issues or
links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip`
URLs)
- [x] My branch name describes the change (e.g. `docs/...`, `fix/...`)
and contains no internal Paperclip ticket id or instance-derived details
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [ ] All Paperclip CI gates are green
- [ ] Greptile is 5/5 with no open P2s, recommendations, or follow-ups
- [x] I will address all Greptile and reviewer comments before
requesting merge

🤖 Generated with [Claude Code](https://claude.com/claude-code)

Co-authored-by: Devin Foley <139239+devinfoley@users.noreply.github.com>
Co-authored-by: Claude Opus 5.5 <noreply@anthropic.com>
canary/v2026.1012.0-canary.2
2026-10-11 21:22:39 -07:00
ba04968b10 fix(server): report failing workspace jobs as 422 instead of 500 (#15941)
A non-zero workspace job exit is the operator job's own result. Map it to 422 workspace_job_failed with the exit code instead of a 500 that the error handler reports to Sentry as a server crash. A job without a command is also 422. Other workspace command failures are unchanged.

Co-Authored-By: Amy (Opus) <claude@users.noreply.github.com>
Co-Authored-By: Claude Opus 5.5 <noreply@anthropic.com>
canary/v2026.1012.0-canary.1
2026-10-11 19:51:23 -07:00
f331d386dc fix(ui): attribute stackless unhandled rejections with event and lifecycle facts (#15940)
Diagnostics only for Sentry PAPERCLIP-FRONTEND-G: record trusted/synthetic unhandledrejection origin, promise kind, and coarse page lifecycle facts without reading rejected values.

Co-Authored-By: Amy (Opus) <claude@users.noreply.github.com>
Co-Authored-By: Claude Opus 5.5 <noreply@anthropic.com>
2026-10-11 19:26:44 -07:00
bfe7c6357d fix(ui): stack confirmation prompt and hide raw custom target keys (#15895)
## Thinking Path

> - Paperclip is the open source app people use to manage AI agents for
work
> - Agents ask the board for decisions with `request_confirmation`
interaction cards
> - The compact task-chat card puts the prompt and the target pill in
one `justify-between` flex row
> - An agent can send a `custom` target with only a machine `key` (for
example `github:org/repo:pull:16`) and no `label`
> - The card shows that raw key as a mono pill that does not shrink, so
the card splits about 50/50 and the prompt is squeezed into the left
half
> - This pull request stacks the prompt above the pill and hides custom
targets that have no human label
> - The benefit is a readable, full-width confirmation prompt without
meaningless identifier pills

## Linked Issues or Issue Description

**What happened?**
A pending confirmation card split its body into two columns. The prompt
used the left half. A pill with the raw text
`github:paperclipai/paperclip-desktop:pull:16` used the right half. The
line breaks in the prompt were also lost.

**Steps to reproduce**
1. Create a `request_confirmation` interaction with a multi-line
`prompt` and `target: { "type": "custom", "key":
"github:org/repo:pull:16" }` (no `label`).
2. Open the task chat for the issue.
3. See that the prompt and the key pill share one row, split about
50/50.

**Expected behavior**
The prompt uses the full card width and keeps its line breaks. A custom
target key is an identifier for idempotency and stale detection, so it
does not show as display text. A target pill shows only when the target
has a human label.

## What Changed

- `TaskChatCompactInteractionCard`: stack the prompt full width with the
target pill below it. This applies to the confirmation and the
checkbox-confirmation cards.
- `TaskChatCompactInteractionCard`: keep line breaks in the prompt
(`whitespace-pre-line`, `break-words`).
- `TaskChatCompactInteractionCard` and `IssueThreadInteractionCard`:
show no target chip for a `custom` target without a `label`. Labeled
custom targets (for example connection authorization) and
`issue_document` targets do not change. The stale-target chevron shows
only when both chips show.
- Add regression tests for the stacked layout, the hidden unlabeled key,
and the labeled link pill. The tests cover the compact confirmation and
checkbox-confirmation cards, and the thread card pending chip and
stale-target expiry (with labeled, unlabeled, and mixed custom targets,
and the chevron rule).
- `CONTRIBUTING.md`: add a "Keep Screenshots Out of the Repo" section.
Contributors attach review screenshots to the PR on GitHub. They do not
commit them to the repository.

## Verification

- `cd ui && npx vitest run
src/components/task-chat/TaskChatInteractionCard.test.tsx
src/components/IssueThreadInteractionCard.test.tsx`: 2 files, 100 tests
pass. If you revert the `isDisplayableRequestConfirmationTarget` guard,
3 of the new thread-card tests fail.
- `node scripts/check-token-gates.mjs`: all gates clean.
- `pnpm --filter @paperclipai/ui typecheck`: no errors in changed files.
The only errors come from `@paperclipai/plugin-sdk/ui`, which had no
built `dist` in the local workspace. These errors are not related to
this change.
- Manual: create a confirmation as in the steps above. The prompt is
full width and no key pill shows. Add `label: "PR #16"` and an `href`. A
`PR #16` link pill shows below the prompt.

### Screenshots

These are Storybook renders of the compact task-chat card at 720 px. The
three cards are: a confirmation with an unlabeled custom target (the
reported case), a confirmation with a labeled custom target, and a
checkbox confirmation with an unlabeled custom target.

The images load from an earlier commit of this PR. A later commit
deletes them, so they are not part of the merged change.

| Before (light) | After (light) | After (dark) |
| --- | --- | --- |
|
![before](https://raw.githubusercontent.com/paperclipai/paperclip/ea22e6b484f21de1dbed258286bfc271cdbcc9a1/docs/pr-screenshots/pr-15895/before-light.png)
| ![after
light](https://raw.githubusercontent.com/paperclipai/paperclip/ea22e6b484f21de1dbed258286bfc271cdbcc9a1/docs/pr-screenshots/pr-15895/after-light.png)
| ![after
dark](https://raw.githubusercontent.com/paperclipai/paperclip/ea22e6b484f21de1dbed258286bfc271cdbcc9a1/docs/pr-screenshots/pr-15895/after-dark.png)
|

## Risks

- Low risk. This is a UI-only change. No schema or API change.
- Agents that send a custom target without a label lose the visible
pill. The key was never readable display text. To show a pill, agents
set `label`.

## Merge Note

The first commit was authored as Paperclip. When you squash-merge, keep
this trailer in the squash body:

Co-Authored-By: Paperclip <Paperclip-Paperclip@users.noreply.github.com>

## Model Used

- Claude Opus 5.5 (`claude-opus-5-5`), Anthropic, via Claude Code agent
harness with tool use (shell, file edit). Standard context window.

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have searched GitHub for duplicate or related PRs and linked
them above
- [x] I have either (a) linked existing issues with `Fixes: #` / `Closes
#` / `Refs #` OR (b) described the issue in-PR following the relevant
issue template
- [x] I have not referenced internal/instance-local Paperclip issues or
links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip`
URLs)
- [x] My branch name describes the change (e.g. `docs/...`, `fix/...`)
and contains no internal Paperclip ticket id or instance-derived details
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [ ] All Paperclip CI gates are green
- [ ] Greptile is 5/5 with no open P2s, recommendations, or follow-ups
- [x] I will address all Greptile and reviewer comments before
requesting merge

🤖 Generated with [Claude Code](https://claude.com/claude-code)

---------

Co-authored-by: Paperclip <noreply@paperclip.ing>
Co-authored-by: Claude Opus 5.5 <noreply@anthropic.com>
Co-authored-by: devinfoley <139239+devinfoley@users.noreply.github.com>
canary/v2026.1011.0-canary.12
2026-10-11 12:29:05 -07:00
Devin FoleyandPaperclip d49cbf4c4f Permit idle sleep with consumed retries and passive worktrees (#15907)
## Thinking Path

> - Paperclip is the open source app people use to manage AI agents for
work.
> - Idle sleep must wait for accepted work and durable cleanup.
> - The retry dispatcher keeps its due date after it promotes a retry.
> - Finished retries and passive local directories can therefore look
like pending work.
> - This pull request requires completion proof and permits known
passive directory records.
> - It retains the records and keeps real work and unknown state awake.

## Linked Issues or Issue Description

Related: #15897 and #15851. The open runtime-service work in #13413
retains its separate service and ingress guarantees. This patch does not
change those checks.

**What happened?**

Idle sleep treats a consumed retry date as pending work. It also blocks
on every retained execution workspace, including a local directory
without runtime activity.

**Steps to reproduce**

1. Promote a scheduled retry, then finish its run without accounting
debt. Retain its scheduled retry date.
2. Retain a local primary directory or Git worktree without runtime
configuration, commands, or cleanup due.
3. Request an owned idle safety report. The report returns `present` for
this history.

**Paperclip version or commit**

Reproduced on master at 4b59e2a2ec.

**Deployment mode**

Server with PostgreSQL. The regression tests use embedded PostgreSQL.

## What Changed

- Permit terminal runs with a finish time at or after their retry date
and no accounting debt. Apply that proof to linked wake,
answer-delivery, and verified failed-lease history.
- Permit known passive local primary directories and Git worktrees. Keep
due cleanup, commands, runtime configuration, shared project runtime
inheritance, pending reopen, runtime owners, and unfamiliar state awake.
- Retain retry dates, workspace records, files, and metadata. Document
the proof and retention limits.

## Verification

- Passed all 200 tests in `pnpm exec vitest run
server/src/__tests__/idle-sleep-safety.test.ts` against embedded
PostgreSQL.
- Passed the 52 retry dispatcher tests.
- Passed `pnpm -r typecheck` and `pnpm build`. After the provider
correction, server typecheck and build passed again.
- Full CI is green for commit
`0510669439e855b90a4e03a2fc7827503cea507f`, including all test shards,
typecheck, build, and browser end-to-end tests. One browser test
initially raced its comment write; the failed jobs passed on retry
without a source change.
- Local `pnpm test:run` recorded 18,721 passed, 105 skipped, and four
failures in existing AI-login, Git-fixture, and native runner-recovery
tests; it exited before the remaining workspace and serialized groups.
The AI-login test passed alone. Both Git fixtures passed with
command-scoped `init.defaultBranch=master`. The native recovery failure
also occurs on the parent revision on this Mac. These suites pass in CI.
- Greptile Apex scored the final commit 5/5. Its provider-coverage
comment was addressed and the review thread resolved.
- Reviewed the diff for secrets, private data, generated files, and
unrelated changes.

## Risks

- Missing finish times, later retry dates, active children, and
accounting debt continue to block sleep. Failed lease history still
requires an exact provider termination receipt.
- Future cleanup eligibility can wait for the next wake. Due cleanup
blocks sleep. Storage must remain attached across sleep and keep its
backup policy.
- Shared directories with a project workspace and unfamiliar providers,
strategies, modes, or configuration remain conservative blockers.
- No migration, provider teardown, retry scheduling change, or tenant
data deletion.

## Model Used

OpenAI Codex, GPT-6, with repository tools and code execution. The
runtime does not expose a more specific model snapshot or context-window
size.

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have searched GitHub for duplicate or related PRs and linked
them above
- [x] I have either (a) linked existing issues with `Fixes: #` / `Closes
#` / `Refs #` OR (b) described the issue in-PR following the relevant
issue template
- [x] I have not referenced internal/instance-local Paperclip issues or
links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip`
URLs)
- [x] My branch name describes the change (e.g. `docs/...`, `fix/...`)
and contains no internal Paperclip ticket id or instance-derived details
- [ ] I have run tests locally and they pass (focused tests pass; the
full local run has the environmental failures documented above)
- [x] I have added or updated tests where applicable
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [x] All Paperclip CI gates are green
- [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups
- [x] I will address all Greptile and reviewer comments before
requesting merge

---------

Co-authored-by: Paperclip <noreply@paperclip.ing>
2026-10-11 12:27:51 -07:00
2223b7de9e perf(ci): stop building the standalone packages inside the public-install verifier (#15908)
## Thinking Path

> - Paperclip is the open source app people use to manage AI agents for
work
> - Every pull request runs the `Build` check. Its last step is the
public npm install verifier, `scripts/verify-grok-npm-install.mjs`,
which stages the eighteen public packages reachable from the server and
the CLI, packs them, and installs them in a clean consumer.
> - Before it stages anything, the verifier runs
`scripts/build-standalone-public-packages.mjs`. That script installs and
compiles the seven sandbox-provider plugins that live outside the pnpm
workspace: one network `pnpm install --ignore-workspace` and one `tsc`
per plugin. The line was copied from the build block of `release.sh`
when the verifier was written in #14024.
> - release.sh needs that build because it publishes those plugins. The
verifier does not for anything it stages. Its package closure follows
`workspace:` specs from the server and the CLI, and a `workspace:` spec
can only name a workspace package, so none of the eighteen packages it
packs is a standalone package and no tarball reads that build's output.
> - One optional path at the end of the verifier does read it:
qualification-package retention, which `docker-runner-check.yml` enables
with `PAPERCLIP_RUNNER_QUALIFICATION_PACKAGES_DIR` after running only
`pnpm build`, packs the Daytona plugin from its `dist`. The PR `Build`
job never sets that variable.
> - The timing line from #15868 and #15888 puts the verifier's staging
phase at 75.8s on the latest run, of which the staged sources, the
bundled installs and the packs account for 46.5s. The rest, about 29s,
is the work before staging, and the standalone build is almost all of
it. `Build` at 433-530s is the slowest check in most PR runs once the
server shards drop, so that time sits on the run's critical path.
> - This pull request runs the standalone build only when retention is
requested, keeps the `ui-dist` copy the server package needs, and times
both on the timing line so what is left before staging is visible.
> - The benefit is a `Build` job about 21-28s shorter, with no change to
what the verifier installs or checks, no loss of coverage for the
standalone build because Canary Dry Run still runs it through
`release.sh`, and no change to the retention path that reads it.

## Linked Issues or Issue Description

Replaces #15892, which GitHub closed automatically when the branch of
#15888 (its base at the time) was deleted on merge. Same two commits,
rebased onto `master` on top of #15888 (1ac48aff), #15868 (026bdcd0) and
#15861 (85f4205d), which are all merged. #15892 reached Greptile 5/5
with every check green on the same content; the review history is there.

**What existing behavior does this improve?**

The `Build` PR check. Its public npm install verifier builds the seven
standalone sandbox-provider plugins before it stages the eighteen
packages it installs, and none of those packages uses that build.

**Subsystem affected**

CI and release scripts (`scripts/verify-grok-npm-install.mjs`,
`scripts/build-standalone-public-packages.mjs`).

**Current behavior**

The verifier runs `node scripts/build-standalone-public-packages.mjs`
and then `bash scripts/prepare-server-ui-dist.sh` before it stages any
package, on every run. The first script removes each sandbox-provider
plugin's `node_modules`, runs `pnpm install --ignore-workspace` against
the registry, links the in-repo plugin SDK, and runs the plugin's `tsc`
build, four plugins at a time. On the last `Build` run before this
change
([38146108750](https://github.com/paperclipai/paperclip/actions/runs/38146108750))
`stage_packages_ms` was 75.8s and the staged sources, bundled installs
and packs inside it took 0.9s, 15.7s and 29.9s, which leaves about 29s
before staging. The verifier's package closure, computed in the same way
as the script computes it, contains eighteen workspace packages and no
sandbox-provider plugin.

**Proposed behavior**

Run the standalone build only when
`PAPERCLIP_RUNNER_QUALIFICATION_PACKAGES_DIR` is set, because that is
the one path that reads it, and report it as `stage_standalone_build_ms`
when it runs. Always run the `ui-dist` copy before staging. With
`PAPERCLIP_RELEASE_REUSE_UI_DIST=1`, which the verifier already sets,
that copies the `ui/dist` that `pnpm build` produced into
`server/ui-dist`, which the server package publishes. Report that copy
as `stage_ui_dist_ms` on the timing line. Leave `release.sh` unchanged,
so the release flow and Canary Dry Run still build the standalone
packages where they are published.

**Reason and benefit**

The verifier proves that the eighteen public packages install cleanly
from the public registry. The standalone build adds seven network
installs and compiles whose output is never packed. Removing it from the
PR path shortens the staging phase by about 21-28s. Measured on this
PR's first commit
([38150787810](https://github.com/paperclipai/paperclip/actions/runs/38150787810)):
`stage_packages_ms` 54.2s against 75.8s, with `stage_ui_dist_ms` 21ms,
and the time before staging, `stage_packages_ms` minus the four staging
keys, down from about 29s to under 0.1s.

**Breaking changes**

None. The same eighteen packages are staged, packed, checked and
installed from the same sources. The retention path builds exactly what
it built before. `scripts/build-standalone-public-packages.mjs` exports
two existing helpers for the new guard test and otherwise does not
change.

## What Changed

- `scripts/verify-grok-npm-install.mjs`: the
`build-standalone-public-packages.mjs` call before staging runs only
when `PAPERCLIP_RUNNER_QUALIFICATION_PACKAGES_DIR` is set, in the same
position as before, and reports `stage_standalone_build_ms`. The flag is
read once into `retainQualificationPackages`, and the retention call at
the end is gated by the same variable, so the build and the retention
that reads it cannot diverge. The `prepare-server-ui-dist.sh` call
stays, is timed, and reports `stage_ui_dist_ms`. The comment explains
why release.sh and the retention path need the standalone build and the
staged packages do not. The timing-line comment lists both new keys.
- `scripts/build-standalone-public-packages.mjs`:
`parseWorkspaceEntries` and `isWorkspacePackage` are exported. No
behavior change.
- `scripts/__tests__/grok-public-install-sandbox.test.mjs`: one new
guard test. It asserts the verifier references the standalone build
exactly once, inside the retention gate, timed under its own key, and
that no second reading of the retention variable exists; that
`retain-runner-qualification-packages.mjs` still packs the Daytona
plugin from its `dist`, and that the Daytona plugin is a standalone
package, so the gate cannot pass vacuously; recomputes the verifier's
package closure from `release-package-map.mjs list` and the manifests
through `workspace:` specs; checks that the public package map still
carries packages outside the pnpm workspace; checks that every package
in the closure is inside the workspace globs of `pnpm-workspace.yaml`;
checks that the server package still publishes `ui-dist`; and checks the
order: closure, gated standalone build, `ui-dist` copy, then staging,
with the reuse flag set and the timing keys written.

### Review fix, second commit

Greptile's P1 on the first commit was valid: `docker-runner-check.yml`
runs `pnpm build` and then the verifier with
`PAPERCLIP_RUNNER_QUALIFICATION_PACKAGES_DIR` set, and
`retainRunnerQualificationPackages` copies
`packages/plugins/sandbox-providers/daytona/dist`. The Daytona plugin is
excluded from the pnpm workspace, so `pnpm build` never produces that
directory and the first commit would have failed that job with `ENOENT`
after every install check had passed. The second commit restores the
build on exactly that path: the verifier builds the standalone packages
when, and only when, retention is requested, and the guard test pins the
gate to the reason for it.

## Verification

- `node --test scripts/__tests__/grok-public-install-sandbox.test.mjs
scripts/__tests__/pack-staged-packages.test.mjs
scripts/__tests__/stage-bundled-packages.test.mjs
scripts/__tests__/prefetch-child.test.mjs
scripts/__tests__/retain-runner-qualification-packages.test.mjs`: 37
tests pass.
- The updated guard test fails against the first commit's verifier (no
retention gate around the build) and passes with the second commit. The
first commit's test failed against #15888's verifier the same way.
- `node --check` passes on the verifier.
- The verifier itself needs Docker and a network, which this workspace
does not have. The first commit's `Build` job
([38150787810](https://github.com/paperclipai/paperclip/actions/runs/38150787810))
ran the branch's verifier and measured the saving: `stage_packages_ms`
54.2s (was 75.8s), `stage_ui_dist_ms` 21ms, `stage_sources_ms` 0.8s,
`stage_bundled_ms` 21.0s, `stage_pack_ms` 32.4s, so under 0.1s remains
before staging where about 29s was. The second commit does not change
the PR path: the gate is false on every PR run, so that job's timing
line should show the same shape with no `stage_standalone_build_ms` key.
- The retention path was not run here: it needs Docker and the
`docker-runner-check` workflow's inputs. The code on that path is the
same `run(process.execPath, [...build-standalone-public-packages.mjs])`
call the verifier made before this PR, in the same position.
- `scripts/__tests__/release-dry-run-notes.test.mjs` exercises the
standalone build inside `release.sh` and is unchanged; 11 of its 12
tests spawn `pnpm`, which is not installed in this workspace, and fail
the same way on #15888's head. They pass in CI, where `pnpm` is
installed.
- The first commit's run failed only on `General tests (server
(11/12))`: all 74 files and 1257 tests passed, then Vitest caught a
teardown `EACCES` removing the per-worker `PAPERCLIP_HOME` under
`native-session-resumption.test.ts`, the same error as the first attempt
of #15888's run 38146108750. Neither PR touches server code; the failure
is noted on the tracking issue.

## Risks

- If a future change makes a package the verifier installs depend on a
standalone package, the verifier would stage an unbuilt `dist`. That
cannot happen through a `workspace:` spec, which is the only kind the
closure follows, and the guard test fails if the closure ever contains a
package outside the workspace globs.
- If a future path in the verifier reads a standalone build without
setting the retention variable, it would see no `dist`. The guard test
pins the single reference to the gate; a new reader has to extend the
gate and the test together.
- The sandbox-provider plugins' builds are no longer exercised on every
PR by the `Build` job. They are still built by `release.sh` in Canary
Dry Run on every PR, by the verifier whenever retention is requested,
and the `build-standalone-concurrency` and `release-dry-run-notes` tests
still cover the script.
- Low risk otherwise. The bundled installs, the packs, the consumer
install, and every probe are unchanged.

> For core feature work, check [`ROADMAP.md`](ROADMAP.md) first and
discuss it in `#dev` before opening the PR. Feature PRs that overlap
with planned core work may need to be redirected — check the roadmap
first. See `CONTRIBUTING.md`.

## Model Used

- Claude Fable 5.1 (Anthropic), model ID `claude-fable-5-1`, run as a
Paperclip agent through the Claude Code local adapter with tool use
(shell, file edits, GitHub CLI). Reasoning mode: extended thinking.

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have searched GitHub for duplicate or related PRs and linked
them above
- [x] I have either (a) linked existing issues with `Fixes: #` / `Closes
#` / `Refs #` OR (b) described the issue in-PR following the relevant
issue template
- [x] I have not referenced internal/instance-local Paperclip issues or
links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip`
URLs)
- [x] My branch name describes the change (e.g. `docs/...`, `fix/...`)
and contains no internal Paperclip ticket id or instance-derived details
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [ ] All Paperclip CI gates are green (CI is running on the second
commit)
- [ ] Greptile is 5/5 with no open P2s, recommendations, or follow-ups
(the P1 on the first commit is fixed in the second; re-review pending)
- [x] I will address all Greptile and reviewer comments before
requesting merge

🤖 Generated with [Claude Code](https://claude.com/claude-code)

---------

Co-authored-by: Bender (Fable) <bender-fable@users.noreply.github.com>
Co-authored-by: Claude Fable 5.1 <noreply@anthropic.com>
Co-authored-by: devinfoley <139239+devinfoley@users.noreply.github.com>
2026-10-11 12:14:32 -07:00
Devin FoleyandPaperclip 0ba88d2195 fix(opencode-local): preserve deadlines in Daytona process sessions (#15905)
## Thinking Path

> - Paperclip manages work done by AI agents.
> - The OpenCode adapter can run its CLI in a provider sandbox.
> - A long CLI run must remain observable until it exits or the host
stops it.
> - The legacy main command does not request a provider process session.
A launch without an active run step uses one synchronous command
request.
> - That request can lose its response before the resolved execution
budget ends.
> - This PR requests the existing asynchronous session path for the main
Daytona OpenCode command. It also carries the resolved command deadline
through the host and provider contracts. The host still applies the
effective capability gate.
> - The change removes that synchronous request from eligible sandbox
runs.

## Linked Issues or Issue Description

Related reporting fix: #15789. A search of open and closed GitHub issues
and PRs found no duplicate transport fix.

**What happened?**

A hosted Linux legacy OpenCode run retained a gateway-timeout response
about one hour after CLI startup. It had a four-hour resolved budget and
recent agent output. The earlier reporting fix correctly kept the
configured policy separate from the timeout message. The original
response owner and specific timer were not retained, so this PR does not
claim to prove that provider cause.

**Expected behavior**

A Daytona target that supports persistent process sessions should
dispatch the long agent command asynchronously. Paperclip should observe
its output and exit through the existing session path. A single command
HTTP request should not need to stay open for the full agent run.

**Steps to reproduce**

1. Use legacy OpenCode with a Daytona sandbox target and a four-hour
execution budget.
2. Launch outside an active measured step. The current main CLI call
does not request a persistent process session.
3. In the SDK fixture, make the synchronous command request return a
provider timeout before the budget ends. Keep the asynchronous session
healthy for more than one hour.
4. The regression tests require session dispatch, incremental output,
one command dispatch, a real exit result, and session cleanup.
5. Set a shorter command deadline and stall dispatch, a status read or a
log snapshot. The command must return a timeout at its own deadline.
Healthy output must not extend that deadline.

**Paperclip version or commit**

Observed source: `e733bddc45e00efb1819fffa8677f7b0d07802c5`. PR base:
`4b59e2a2ecc67e98b336b8eb4c09959681672d54`.

**Deployment mode**

Hosted Linux server, legacy OpenCode adapter, Daytona sandbox. The host
gate retains the old path when a provider cannot keep process sessions.

## What Changed

- Add an optional sandbox session choice to the shared process helper.
Leave the choice absent for existing callers.
- Request that session only at the main Daytona OpenCode CLI invocation.
Keep probes, preparation and other providers on their existing paths.
- Carry a separate optional command deadline through the shared runner,
host service and plugin SDK. Existing session callers can omit it. Zero
leaves the command deadline disabled.
- Bound dispatch, live output and recovery observations with one command
timer. Clear it on settlement. Fence late stream callbacks. Remove
deadline listeners after each read and clear interrupted polling waits.
Preserve a known exit code if only the final logs time out. A timeout
result does not claim that the process stopped.
- Add adapter and process-helper regression coverage. Test the existing
Daytona session for a virtual run beyond one hour, without command
replay, with release cleanup.
- Document transport selection and the limits of the timeout evidence.

## Verification

- `pnpm -r typecheck` passed on Node 25.6.1 and pnpm 9.15.4 with the
command deadline changes.
- `pnpm build` passed with the updated contracts. The separately
installed Daytona package also passes its own typecheck and build
against the pinned SDK 0.203.0 and TypeScript 5.9.3.
- Five focused process, adapter, host and provider suites passed all 349
tests. They cover a run beyond one hour, five stalled observation
phases, healthy-stream deadlines, zero/absent budgets, late callbacks,
session release, SSH and capability fallback.
- The real environment-runtime forwarding tests passed: 19 selected
tests, including the separate command budget and forced session flag in
the worker RPC.
- An earlier full local `pnpm test:run` began before a clean build and
overlapped the correction. That mixed-version run was stopped and is not
passing evidence. After the build, the two previously uncollected suites
pass (1,659 tests). Two unchanged workspace fixtures fail with this
machine's Git default branch `main`; both pass with a test-process-only
`master` override. One unchanged native recovery fixture fails on both
this branch and an independently installed and built checkout of base
`4b59e2a2ecc67e98b336b8eb4c09959681672d54`, with the same
terminal-result mismatch. It is not introduced by this change. The full
local suite is not claimed green. These limitations do not replace fresh
hosted CI.
- Final head `8e96638cdef8ca6e91f7a42a52c83a075180c137` passes all
hosted checks: 54 passed and 2 expected Storybook skips. Greptile
reviewed this exact head at 18:12 UTC and scored it 5/5. Both actionable
findings are fixed and resolved. GitHub reports no conflicts and a clean
merge state. Earlier-head results are not used as final-head proof.
- The standalone provider test command passes 373 tests, with 14
expected live-probe skips.
- SDK tests use a controlled virtual clock. No live provider experiment,
task replay, manual deployment, or public PR merge was performed.

## Risks

The main legacy OpenCode command uses Daytona's existing session route
when the effective capability gate permits it. A quiet log stream can
use the existing status and snapshot fallback. Those observations add
provider reads. The new optional command budget is separate from each
read's timeout and returns a timeout without the host RPC's extra
30-second allowance. Existing session callers that omit it keep their
previous lifetime.

Callback bridge control commands retain their explicit session bypass.
The capability gate retains the previous path for unsupported targets.
Other providers, local and SSH execution keep their existing path. Retry
policy, Stop acknowledgement and lease ownership rules stay the same.
The SDK exposes no cancellation handle for an abandoned stream; existing
Stop and lease teardown still own command termination. This fix does not
establish the original gateway owner or prove recovery in a live
environment.

## Model Used

OpenAI Codex, based on GPT-6, with reasoning, repository tools and code
execution. The exact backend identifier and context window size are not
exposed by this session.

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have searched GitHub for duplicate or related PRs and linked
them above
- [x] I have either (a) linked existing issues with `Fixes: #` / `Closes
#` / `Refs #` OR (b) described the issue in-PR following the relevant
issue template
- [x] I have not referenced internal/instance-local Paperclip issues or
links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip`
URLs)
- [x] My branch name describes the change (e.g. `docs/...`, `fix/...`)
and contains no internal Paperclip ticket id or instance-derived details
- [x] I have run tests locally and they pass (changed paths; the
independently reproduced local baseline failure is documented above)
- [x] I have added or updated tests where applicable
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [x] All Paperclip CI gates are green
- [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups
- [x] I will address all Greptile and reviewer comments before
requesting merge

---------

Co-authored-by: Paperclip <noreply@paperclip.ing>
2026-10-11 12:08:45 -07:00
1ac48aff8d perf(ci): pack the verifier's staged packages concurrently (#15888)
## Thinking Path

> - Paperclip is the open source app people use to manage AI agents for
work
> - Every pull request runs the `Build` check. Its last step is the
public npm install verifier, `scripts/verify-grok-npm-install.mjs`,
which stages the eighteen public packages, packs them, and installs them
in a clean consumer.
> - The verifier packs the eighteen packages one after another with `npm
pack`. Each pack is a Node start-up plus gzip of that package's files.
The timing line added in #15868 shows this loop at 35.6-37.9s on four
`Build` runs, the largest part of the staging phase now that the bundled
installs overlap.
> - `Build` at 433-530s is the slowest check in most PR runs once the
server shards drop, so its staging phase sets the wall-clock time of the
run.
> - Each pack reads only its own `package-<index>` directory and writes
one tarball. The runner has four cores and the packs are CPU-bound.
There is no reason to run them one after the other.
> - This pull request runs the packs as concurrent children through the
prefetch helper, one per core, bundled packages first, each into its own
directory, and puts the results back into dependency order before every
tarball is checked.
> - The benefit is a shorter `Build` job, and a timing line that reports
the packs' serial cost next to their wall time, so the saving is
measured on this PR's own run instead of estimated.

## Linked Issues or Issue Description

Refs #15868, #15861. This branch is stacked on the branch of #15868,
which is stacked on #15861, because the same execution branch holds both
open PRs. The diff here is this PR's one commit. After #15868 merges,
this PR is retargeted to `master` and rebased.

**What existing behavior does this improve?**

The `Build` PR check. Its public npm install verifier packs the eighteen
public packages in one serial loop.

**Subsystem affected**

CI and release scripts (`scripts/verify-grok-npm-install.mjs`,
`scripts/prefetch-child.mjs`).

**Current behavior**

After the bundled installs are joined, the verifier runs `npm pack
--pack-destination <root>` for each of the eighteen packages in turn,
finds the new tarball by listing the shared root, and checks it with
`tar -tzf`. `stage_pack_ms` was 35.8s, 37.1s, 35.6s and 37.9s on the
four runs of #15868. The parent is idle apart from the one pack it waits
on, and three of the four cores are idle.

**Proposed behavior**

Start the packs as children through `startPrefetch`, at most one per
core (`os.availableParallelism()`), bundled packages first because they
make the largest tarballs. Each child packs into its own `pack-<index>`
directory, so the tarball a package produced is read from there instead
of guessed from a shared directory. Register each child for cleanup as
it starts. Put the results back into dependency order, then check every
tarball with `tar -tzf` as before, then copy them into the assets
directory as before. Report `stage_pack_check_ms`, `pack_concurrency`,
`pack_serial_ms` and `pack_longest_ms` on the timing line, and keep
`stage_pack_ms` as the whole step.

**Reason and benefit**

With four slots the step takes about the longest single pack or a
quarter of the serial sum, whichever is larger. The expected saving is
20-25s of the 36-38s, measured on this PR's own `Build` job by
`pack_serial_ms` against `stage_pack_ms`.

**Measured on this PR's first run
([38146108750](https://github.com/paperclipai/paperclip/actions/runs/38146108750),
`Build` 433s, verifier 214s):** `stage_pack_ms` 29.9s against 35.6-37.9s
before, so the step shed 6-8s, not the 20-25s estimated.
`pack_serial_ms` is 44.4s with `pack_concurrency` 4, and
`pack_longest_ms` is 28.3s: one pack (the server with its 513 MB bundled
closure, gzip level 9 inside npm) runs for almost the whole step, so the
step is bounded by that pack and not by the slot count. The seventeen
other packs fit inside it. The serial sum is 7-9s higher than the old
serial step, which is the four processes contending for the runner's
cores. `stage_packages_ms` 75.8s against 80.4-89.6s on #15868's runs;
`image_wait_ms` and `grok_wait_ms` stay 0.

**Breaking changes**

None. The same packages are packed with the same `npm pack` arguments,
the tarballs are checked the same way, and the consumer receives them in
the same order.

## What Changed

- `scripts/pack-staged-packages.mjs` (new): `packStagedPackages`
launches the packs in the order given with at most `concurrency`
children at once, through the prefetch helper, and resolves with each
entry's tarball path and wall time in the same order. Every child is
passed to `register` as it starts. The first failure rejects with the
tail of that child's log and nothing further is launched. A child that
leaves anything other than one tarball in its directory is a failure.
`packConcurrency` is one per core. `packTimings` gives the timing-line
keys.
- `scripts/verify-grok-npm-install.mjs`: each entry gets its `index` and
its own `pack-<index>` destination. The pack loop is replaced by one
`packStagedPackages` call, launched bundled-first and registered into
the `prefetches` list as each child starts, so an earlier failure stops
any pack still running before the scratch root is removed. The results
are sorted back into dependency order, every tarball is checked in that
order, and the copy into the assets directory is unchanged. Only the
lifecycle sentinel is still packed in-process.
- Timing line: `stage_pack_check_ms`, `pack_concurrency`,
`pack_serial_ms` and `pack_longest_ms` are added. `stage_pack_ms` still
covers the whole step, so the before and after numbers compare directly.
- `scripts/__tests__/pack-staged-packages.test.mjs` (new): five tests
with a local stand-in for npm and no network. The default concurrency
and the pack arguments; four packs with two slots run the two slow packs
together, start a third only once a slot is free, receive the exact `npm
pack` argument list, register every child, and come back in entry order
with their tarballs and timing keys although the fast packs finish
first; a failed pack rejects with its log tail, launches nothing more,
and leaves the running pack to be stopped; a pack that produces two
tarballs or none is a failure; and no entries resolve at once.
- `scripts/__tests__/grok-public-install-sandbox.test.mjs`: the guard
test on the verifier source now checks the import, the bundled-first
launch with cleanup registration, the reorder before the checks, the
checks before the copy, that only the sentinel is packed in-process,
that each pack has its own directory, and the new timing keys.
- `package.json`: the new test file is in `test:release-registry`.

## Verification

- `node --test scripts/__tests__/pack-staged-packages.test.mjs
scripts/__tests__/grok-public-install-sandbox.test.mjs
scripts/__tests__/stage-bundled-packages.test.mjs
scripts/__tests__/prefetch-child.test.mjs`: 35 tests pass (30 on
#15868's head plus the five new ones). The new file passes three
consecutive runs.
- `node --check` passes on both scripts.
- With the real npm 11.12.1 on Node 25.9: two small packages packed
through `packStagedPackages` with two slots produce one tarball each in
their own `pack-<index>` directory, with the expected `package/` listing
from `tar -tzf`.
- The verifier itself needs Docker and a network, which this workspace
does not have. This PR's own `Build` job runs the branch's verifier; its
timing line carries `stage_pack_ms`, `pack_serial_ms`, `pack_longest_ms`
and `pack_concurrency`, which is the measurement. Before, on #15868's
four runs: `stage_pack_ms` 35.8s / 37.1s / 35.6s / 37.9s.
- `docker-runner-check.yml` runs the same script after `pnpm build` and
needs no change.

## Risks

- Four `npm pack` processes run at once and share the host npm
configuration and cache. `npm pack --ignore-scripts` reads the package
directory and writes one tarball; it does not write to the cache beyond
its per-process log file. If a shared-state race appears, the failing
pack's log tail is in the error and the fix is to lower the concurrency.
- Memory and CPU: four Node processes instead of one on the four-core
`Build` runner, for about thirty seconds. The largest pack (the server
with its bundled dependencies) is the same process as before.
- The pack output moves from the CI log into per-pack log files in the
scratch root. A failure reports the last 2000 characters of the failing
pack's log; a successful pack's output is discarded with the scratch
root.
- The tarball checks (`tar -tzf`) now run after all packs instead of
after each pack. A bundled Codex payload is still rejected before any
tarball reaches the consumer; the only change is that the error arrives
a few seconds later.
- Low risk otherwise. The bundled installs, the consumer install, and
every probe are unchanged.

> For core feature work, check [`ROADMAP.md`](ROADMAP.md) first and
discuss it in `#dev` before opening the PR. Feature PRs that overlap
with planned core work may need to be redirected — check the roadmap
first. See `CONTRIBUTING.md`.

## Model Used

- Claude Fable 5.1 (Anthropic), model ID `claude-fable-5-1`, run as a
Paperclip agent through the Claude Code local adapter with tool use
(shell, file edits, GitHub CLI). Reasoning mode: extended thinking.

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have searched GitHub for duplicate or related PRs and linked
them above
- [x] I have either (a) linked existing issues with `Fixes: #` / `Closes
#` / `Refs #` OR (b) described the issue in-PR following the relevant
issue template
- [x] I have not referenced internal/instance-local Paperclip issues or
links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip`
URLs)
- [x] My branch name describes the change (e.g. `docs/...`, `fix/...`)
and contains no internal Paperclip ticket id or instance-derived details
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [x] All Paperclip CI gates are green (run 38146108750: `server
(11/12)` failed on its first attempt on a teardown `EACCES` while
removing the per-worker `PAPERCLIP_HOME` after all 74 files and 1257
tests had passed, in a file this PR does not touch; the re-run of that
job passed and every check is green)
- [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups
- [x] I will address all Greptile and reviewer comments before
requesting merge

🤖 Generated with [Claude Code](https://claude.com/claude-code)

Co-authored-by: devinfoley <139239+devinfoley@users.noreply.github.com>
Co-authored-by: Claude Fable 5.1 <noreply@anthropic.com>
canary/v2026.1011.0-canary.11
2026-10-11 12:02:19 -07:00
3d3b8d4371 fix(external-objects): distinguish hidden GitHub repos from genuinely-missing objects (#15906)
## Thinking Path

> - Paperclip is the open source app people use to manage AI agents for
work.
> - Issues reference external objects such as GitHub pull requests. The
instance resolves their status and shows it in the UI.
> - GitHub returns 404 both when a pull request or issue does not exist
and when the repository exists but the configured credentials cannot see
it. GitHub hides private repos behind a 404 on purpose.
> - The resolver treated every 404 as a terminal not-found verdict. It
froze references to inaccessible repos forever, and marked them "Not
found (Stale)".
> - This pull request probes the repository metadata to tell the two
cases apart and keep frozen objects re-checkable.
> - The benefit is accurate statuses instead of permanent "Not found"
labels for repos the instance cannot see.

## Linked Issues or Issue Description

No public GitHub issue exists for this report.

**What happened?**
- The issue properties panel and markdown decoration showed many GitHub
pull request and issue references as "Not found (Stale)" even though the
objects exist.
- GitHub returns 404 for objects the configured credentials cannot
access, not only for objects that are truly gone.
- The resolver treated every 404 as a terminal not-found verdict, so
those references were frozen and showed a misleading "stale" liveness.
- Detected-but-unresolved GitHub objects were labeled "Not yet resolved"
in inline markdown, which did not match the pill label "Not yet
refreshed".

**Expected behavior**
- A reference to a repo the credentials cannot see should surface as
authorization-required, not as a permanent "Not found".
- A truly missing object should still be "Not found".
- A terminal object (merged, closed, or confirmed not-found) should not
be labeled "Stale", because it is never refreshed again.
- Inline markdown statuses should match the pill statuses.

**Steps to reproduce**
1. Configure GitHub credentials with no access to a private repo.
2. Add a comment or issue description that links to a pull request in
that repo.
3. Wait for the external object resolver to run.
4. Observe the reference labeled "Not found (Stale)".

**Paperclip version or commit**
- `master` at `e733bdd` (before this change).

**Deployment mode**
- Self-hosted server.

## What Changed

- Added a repository visibility probe to the GitHub external object
provider.
- A 404 for an object now probes the repository metadata with the same
credentials:
- Repository visible: the object genuinely is gone. Keep the not-found
snapshot.
- Repository hidden: return an authorization-required result instead of
a terminal not-found verdict.
- Probe failed (network, rate limit, 5xx): return an unreachable result
and retry later.
- A rate-limited repository probe (403 with `x-ratelimit-remaining: 0`)
is treated as uncertain, not as missing access, so it retries instead of
showing a misleading "Requires auth".
- Re-check previously frozen GitHub not-found objects on their normal
schedule so they self-heal once credentials or repo visibility improve.
A frozen object is only re-checked until a probe confirms the repo is
visible; once confirmed deleted, it is terminal and no longer polled.
- Cleared any terminal verdict when a refresh fails, so a failed refresh
does not freeze an object.
- Kept terminal objects from displaying the "stale" liveness label.
- Matched the inline markdown status label to the pill status label, so
detected-but-unresolved GitHub objects say "Not yet refreshed" instead
of "Not yet resolved".
- Skipped the liveness suffix in markdown links and status icons when it
duplicates the status label (e.g. no more "Requires auth (Requires
auth)").
- Cached repository visibility probes per company+repo + credential
fingerprint, so many objects in the same repo share one probe per
refresh cycle instead of each issuing its own — and a verdict obtained
under one token is never reused by a later refresh running under a
different credential.

## Verification

- Added provider tests for visible, hidden, failed, and rate-limited
repository probes, per-company/per-repo probe caching, and
probe-verified not-found snapshots.
- Added service tests for terminal-object liveness, for re-checking
frozen GitHub not-found objects, and for ensuring probe-verified
not-found objects are never re-queued.
- Added UI tests asserting unresolved GitHub objects render as "Not yet
refreshed" (not "Not yet resolved") and that failed-first-refresh labels
do not repeat the liveness text.
- Ran `npx vitest run src/__tests__/external-objects-service.test.ts` in
`server/`: 34 passed (incl. provider + service suites).
- Ran the external-object markdown/pill/icon suites in `ui/`: 97 passed.
- `ci / Typecheck + Release Registry` and all other CI gates pass on
this head. Local `tsc` could not run to completion in the execution
sandbox (the sandbox memory cap killed it), so CI typecheck is the
authoritative gate.

## Risks

- Low risk. The change is confined to the GitHub external object
provider and the external object service.
- A repo that genuinely does not exist and a private repo both return
404 for the probe. Both now surface authorization-required or a retry
instead of an immediate not-found freeze, which stays re-checkable and
self-heals.
- Re-checking frozen not-found objects adds at most one repository probe
per affected object until the probe produces a definitive verdict, after
which the object is terminal and no longer polled. Probe results are
cached per company+repo+credential, so a credential rotation always
re-probes instead of inheriting a stale verdict.

> For core feature work, check [`ROADMAP.md`](ROADMAP.md) first and
discuss it in `#dev` before opening the PR. Feature PRs that overlap
with planned core work may need to be redirected — check the roadmap
first. See `CONTRIBUTING.md`.

## Model Used

- Provider: DeepSeek via OpenRouter, model ID
`openrouter/~deepseek/deepseek-v4-flash-latest`, running inside the
Paperclip opencode adapter (`opencode_local`).
- The model produced and assisted with the reasoning and code changes;
the execution workspace, test suite, and git/PR steps above were run by
the same agent run.

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have searched GitHub for duplicate or related PRs and linked
them above
- [x] I have either (a) linked existing issues with `Fixes: #` / `Closes
#` / `Refs #` OR (b) described the issue in-PR following the relevant
issue template
- [x] I have not referenced internal/instance-local Paperclip issues or
links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip`
URLs)
- [ ] My branch name describes the change (e.g. `docs/...`, `fix/...`)
and contains no internal Paperclip ticket id or instance-derived details
— the branch name is assigned by the managed execution workspace and the
harness requires keeping it
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [x] All Paperclip CI gates are green on the current head (all `ci /
*`, Greptile, Socket, and review checks pass)
- [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups
- [x] I will address all Greptile and reviewer comments before
requesting merge

---------

Co-authored-by: devinfoley <139239+devinfoley@users.noreply.github.com>
Co-authored-by: Paperclip <noreply@paperclip.ing>
2026-10-11 11:53:21 -07:00
026bdcd046 perf(ci): run the verifier's bundled-dependency installs concurrently (#15868)
## Thinking Path

> - Paperclip is the open source app people use to manage AI agents for
work
> - Every pull request runs the `Build` check. Its last step is the
public npm install verifier, `scripts/verify-grok-npm-install.mjs`,
which stages the eighteen public packages and installs them in a clean
consumer.
> - The verifier stages the packages in one serial loop. Three packages
bundle dependencies (`@paperclipai/server`,
`@paperclipai/adapter-utils`, `@paperclipai/db`). Each one runs a
host-side `npm install` of its bundled closure in-process, one after the
other, and nothing in the loop overlaps anything else. The staging phase
took 102-116s on recent `Build` jobs.
> - `Build` at 433-530s is the slowest check in most PR runs once the
server shards drop, so its staging phase sets the wall-clock time of the
run.
> - The three installs write only their own directories and read nothing
from each other. There is no reason to run them one after the other.
> - This pull request starts the three installs together as child
processes and copies the other fifteen packages while they run. Packing
stays serial and in order.
> - The benefit is a shorter `Build` job, and a timing line that reports
each install, so the saving is measured on this PR's own run instead of
estimated.

## Linked Issues or Issue Description

Refs #15861. This branch is stacked on the branch of #15861 because the
same execution branch holds that open PR. The diff here is this PR's
three commits. After #15861 merges, this PR is retargeted to `master`
and rebased.

**What existing behavior does this improve?**

The `Build` PR check. Its public npm install verifier stages the
eighteen public packages in one serial loop.

**Subsystem affected**

CI and release scripts (`scripts/verify-grok-npm-install.mjs`,
`scripts/prepare-bundled-package.mjs`, `scripts/prefetch-child.mjs`,
`scripts/prefetch-supervisor.mjs`).

**Current behavior**

The staging loop calls `prepareBundledPackage` in-process for the three
packages that bundle dependencies. Each call runs a host-side `npm
install` of that package's bundled closure, applies the repo patches,
and rewrites the manifest, before the loop moves to the next package.
The timing line reports the whole staging phase as one number, 102-116s
on recent runs. The three installs are the only network work in that
phase.

**Proposed behavior**

Stage the three bundled packages' sources first, start their installs at
the same time as children of the script's own CLI entry (the same path
`release.sh` uses), copy the other fifteen packages while the installs
run, join the installs, and then pack every package in dependency order
as before. Report `stage_sources_ms`, `stage_bundled_ms`,
`stage_pack_ms`, `bundled_wait_ms` and one `stage_bundled_<package>_ms`
per install on the timing line.

**Reason and benefit**

The staging phase shortens by the two shorter installs. Measured on this
PR's first run (below): the three installs sum to 25.9s and take 16.4s
of wall time together, so the overlap removes about 9.5s from the phase,
and the timing line now shows that packing (35.8s) and the
standalone-package build before the loop (about 27s) are the larger
remaining costs. The original estimate of 30-50s was too high because it
assumed the installs were about half of the phase; they are a quarter.

**Breaking changes**

None. The packed tarballs are produced by the same script, in the same
order, and are checked the same way.

## What Changed

- `scripts/stage-bundled-packages.mjs` (new): `startBundledInstalls`
starts one child per bundled package through the prefetch helper from
#15849, with the child's output in a log file. `bundledInstallTimings`
reads each child's wall time for the timing line. `bundledPackageSlug`
maps a package name to its log and timing key.
- `scripts/verify-grok-npm-install.mjs`: the staging loop is split. The
bundled packages' sources are staged first and their installs start
together. The other packages are copied while the installs run. The
install handles are pushed into the `prefetches` list at once, so an
earlier failure stops any install still running before the scratch root
is removed. The join comes before the first `npm pack`. The pack loop
walks every package in `needed` order and checks each tarball as before.
`prepareBundledPackage` is no longer imported.
- Timing line: `stage_sources_ms`, `stage_bundled_ms`, `stage_pack_ms`,
`bundled_wait_ms` and `stage_bundled_server_ms`,
`stage_bundled_adapter_utils_ms`, `stage_bundled_db_ms` are added.
`stage_packages_ms` and the download keys are unchanged, so the before
and after numbers compare directly.
- `scripts/__tests__/stage-bundled-packages.test.mjs` (new): five tests
with local Node children and no network. The slug mapping; the children
run the CLI entry `release.sh` runs and never an in-process call; two
installs run at the same time, each with its own source and target, and
their logs and timing keys are correct (each child exits only after the
other has started, so serial children would fail); a failed install
rejects with its own log tail while the other is still running and is
then stopped; and stopping the installs after one fails also stops the
stand-in npm process the other wrapper is blocked on.
- `scripts/__tests__/grok-public-install-sandbox.test.mjs`: one guard
test on the verifier source. The bundled sources are staged before the
installs start, the installs are registered for cleanup before the other
packages are copied, the join comes before the pack loop, the pack loop
is in order, there is still exactly one package pack loop, and the
timing keys are reported.
- `package.json`: the new test file is in `test:release-registry`.

### Review fix (second commit): stop a prefetch's whole process tree

Greptile pointed out that `stopPrefetches` signalled only the Node
wrapper of each install, while the wrapper is blocked in
`execFileSync('npm', ['install', ...])`. After one install failed, the
other wrapper died and its npm process kept writing into the scratch
root the verifier was about to remove.

- `scripts/prefetch-child.mjs`: on POSIX every prefetch child is started
`detached`, so it leads its own process group. `stopPrefetches` signals
the group (`process.kill(-pid, ...)`) and waits until no member of the
group exists, with `SIGKILL` after the grace period and a second grace
period before it gives up so cleanup cannot hang. On Windows the child
is signalled directly as before.
- `scripts/__tests__/prefetch-child.test.mjs`: two tests. A stopped
prefetch's grandchild is gone after `stopPrefetches` returns, and a
`SIGINT` to a separate parent process reaches the grandchild while the
parent still exits with `SIGINT`. Both are skipped on Windows.
- `scripts/__tests__/stage-bundled-packages.test.mjs`: one test, the
cancellation case Greptile asked for. The stand-in
`prepare-bundled-package` blocks in `execFileSync` on a stand-in npm
that announces its pid; after the other install fails, `stopPrefetches`
must leave that pid gone.

All three new tests fail against the previous helper (`grandchild <pid>
outlived stopPrefetches`, `outlived the parent's SIGINT`, `stand-in npm
<pid> outlived stopPrefetches`) and pass with the fix.

### Review fix (third commit): the parent runs no signal handler

Greptile pointed out that the second commit forwarded the terminal's
signals to the detached groups through a JavaScript handler in the
parent. The verifier spends most of its time blocked in `execFileSync`
(the standalone builds, every `npm pack`), where no handler can run, and
installing the handler also replaced the parent's immediate default
termination. So a Ctrl-C during a synchronous phase did nothing until
that command returned, and the detached installs and downloads kept
running meanwhile. Confirmed with the new test against the second
commit's helper: the parent survived the `SIGINT`, exited with code 1
once the synchronous command had died, and its handler never ran.

- `scripts/prefetch-supervisor.mjs` (new): every prefetch command now
runs under this small Node script as the leader of its own process
group. The supervisor holds a pipe from the parent on stdin (which the
parent writes to only to request a stop where it cannot signal the
group; see the fourth commit). The kernel closes it when the parent
exits for any reason, including a signal delivered while the parent is
blocked, or `SIGKILL`, and the supervisor then stops its group
(`SIGTERM`, `SIGKILL` after the grace period) and says so in the log. It
passes group-wide signals on to the command and stays alive until the
command exits, so its own exit reports the command's exit code or
signal. Run by hand with a terminal or `/dev/null` on stdin it watches
nothing.
- `scripts/prefetch-child.mjs`: `startPrefetch` spawns the supervisor
with the command, with stdin as the pipe. The forwarding handlers are
gone; the parent installs no signal handler, so its default termination
stays immediate. `stopPrefetches` is unchanged.
- `scripts/__tests__/prefetch-child.test.mjs`: the first test asserts
the parent has no `SIGINT`/`SIGTERM`/`SIGHUP` listener after a prefetch
starts. The "signal to the parent" test now runs for `SIGINT` and
`SIGKILL` and checks the supervisor's log line. One new test gives a
separate parent its own process group, blocks it in `execFileSync` on a
20s command, and sends `SIGINT` to that group the way a terminal sends
Ctrl-C: the parent must die of `SIGINT` within two seconds and the
prefetch's grandchild must be gone. Against the previous helper the
parent exits with code 1 instead, the grandchild outlives `SIGKILL`, and
the handler-count assertion fails.

### Review fix (fourth commit): a deliberate stop on Windows goes
through the pipe

Greptile pointed out that on Windows, where `startPrefetch` now returns
the supervisor, `stopPrefetches` called `child.kill('SIGTERM')` on it.
Windows has no process groups and `kill` there ends a process outright,
so the supervisor died without running its handler and its command kept
running after cleanup returned.

- `scripts/prefetch-child.mjs`: without process groups, the graceful
stop no longer signals the supervisor. `stopPrefetches` writes a stop
request to the pipe the supervisor already watches for the parent's exit
(`stdin.end('stop\n')`). Only the `SIGKILL` escalation targets the
supervisor itself, after it has had its grace period. POSIX keeps the
group signal, so `stopPrefetches` and the existing stop and failure
tests are unchanged there.
- `scripts/prefetch-supervisor.mjs`: data on stdin is a stop request and
EOF is the parent's exit; both end the group the same way (`SIGTERM`,
`SIGKILL` after the grace period) and the log line names which one it
was.
- `scripts/__tests__/prefetch-child.test.mjs`: one new test writes the
stop request to a running prefetch's pipe instead of calling
`stopPrefetches`. The supervisor must exit with `SIGTERM`, the command's
grandchild must be gone, and the log must say `stop requested` and not
`parent exited`. The previous supervisor fails it on the log line, since
it treated the request as the parent's exit. The Windows kill itself
cannot be reproduced on the Linux runners, so the Windows branch of
`signalTree` is verified by that supervisor test plus reading its two
lines. The stand-in that ignores `SIGTERM` is now skipped on Windows,
where `kill` cannot be ignored.

## Verification

- `node --test scripts/__tests__/stage-bundled-packages.test.mjs
scripts/__tests__/grok-public-install-sandbox.test.mjs
scripts/__tests__/prefetch-child.test.mjs`: 30 tests pass (was 19 before
this PR, 24 after the first commit, 27 after the second, 29 after the
third). The three files pass three consecutive runs.
- `node --check` passes on all four scripts.
- The verifier itself needs Docker and a network, which this workspace
does not have. This PR's own `Build` job runs the branch's verifier.
Measured on all four commits' runs
([38132868803](https://github.com/paperclipai/paperclip/actions/runs/38132868803):
`Build` 428s, `pnpm build` 112s, verifier step 214s;
[38136912842](https://github.com/paperclipai/paperclip/actions/runs/38136912842):
`Build` 447s;
[38139871529](https://github.com/paperclipai/paperclip/actions/runs/38139871529):
`Build` 432s;
[38142762538](https://github.com/paperclipai/paperclip/actions/runs/38142762538):
`Build` 457s, `pnpm build` 123s, verifier step 231s):

| Key | Run 1 | Run 2 | Run 3 | Run 4 | Before |
| --- | --- | --- | --- | --- | --- |
| `stage_packages_ms` | 80.4s | 84.9s | 81.5s | 89.6s | 102-116s on
master runs 38112764439, 38111191543, 38110932348, 38110914319,
38110897745, 38127611057; 84.5s on #15849's run on a runner as fast as
these |
| `stage_sources_ms` | 1.4s | 0.7s | 0.9s | 0.9s | (inside the number
above) |
| `stage_bundled_server_ms` / `adapter_utils` / `db` | 16.3s / 5.0s /
4.6s | 14.9s / 3.6s / 3.3s | 16.4s / 5.2s / 4.7s | 17.1s / 4.4s / 3.8s |
ran one after another, 21.8-25.9s together |
| `stage_bundled_ms` (wall, all three) | 16.4s | 15.0s | 16.5s | 17.2s |
21.8-25.9s |
| `bundled_wait_ms` | 15.3s | 14.7s | 16.1s | 16.7s | — |
| `stage_pack_ms` | 35.8s | 37.1s | 35.6s | 37.9s | (inside the number
above) |
| `consumer_install_ms` | 94.4s | 97.8s | 95.7s | 99.8s | 97-134s |
| `image_prefetch_ms` / `image_wait_ms` | 33.7s / 0ms | 31.8s / 0ms |
34.7s / 0ms | 33.7s / 0ms | unchanged |
| `grok_prefetch_ms` / `grok_wait_ms` | 2.1s / 0ms | 2.1s / 0ms | 2.0s /
0ms | 2.1s / 0ms | unchanged |

The overlap removed about 7-10s from the staging phase on each of the
four runs (21.8-25.9s of installs in 15.0-17.2s of wall time). The third
and fourth commits changed no timing: both waits stay at 0ms and the
staging phase sits inside the band of the first two runs. The rest of
the phase is the standalone-package build and the server UI dist prep
before the loop (about 27-32s) and the eighteen serial `npm pack` plus
`tar -tzf` checks (36-37s).

- `docker-runner-check.yml` runs the same script after `pnpm build` and
needs no change.

## Risks

- Three `npm install` processes share the host npm cache at the same
time. npm's cache (`cacache`) is designed for concurrent writers, and
the three installs have disjoint target directories. If a shared-cache
race appears, the failing install's log tail is in the error and the fix
is to serialize again. The first CI run showed none.
- The install output moves from the CI log into per-install log files in
the scratch root. A failure reports the last 2000 characters of the
failing install's log; a successful install's output is discarded with
the scratch root.
- Memory: three concurrent installs on the `Build` runner instead of
one. The closures are small (the server's eight bundled packages are the
largest), so this stays well under the runner's memory.
- Process groups: a detached child no longer receives the terminal's
signals on its own. The supervisor stops its group when the parent is
gone, which it learns from the kernel closing the stdin pipe, so this
holds for a Ctrl-C while the parent is blocked in synchronous work and
for `SIGKILL` alike. The parent keeps Node's default signal handling. If
the supervisor itself is killed with `SIGKILL` before its command, the
command is orphaned and finishes on its own (each install ends within
seconds; the image pull within a minute), the same as any orphaned
grandchild before this PR.
- One extra Node process per prefetch (five per verifier run). Each
costs about 40ms to start, inside the time the parent spends staging
anyway.
- Low risk otherwise. Packing, the tarball checks, the consumer install,
and every probe are unchanged.

> For core feature work, check [`ROADMAP.md`](ROADMAP.md) first and
discuss it in `#dev` before opening the PR. Feature PRs that overlap
with planned core work may need to be redirected — check the roadmap
first. See `CONTRIBUTING.md`.

## Model Used

- Claude Fable 5.1 (Anthropic), model ID `claude-fable-5-1`, run as a
Paperclip agent through the Claude Code local adapter with tool use
(shell, file edits, GitHub CLI). Reasoning mode: extended thinking.

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have searched GitHub for duplicate or related PRs and linked
them above
- [x] I have either (a) linked existing issues with `Fixes: #` / `Closes
#` / `Refs #` OR (b) described the issue in-PR following the relevant
issue template
- [x] I have not referenced internal/instance-local Paperclip issues or
links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip`
URLs)
- [x] My branch name describes the change (e.g. `docs/...`, `fix/...`)
and contains no internal Paperclip ticket id or instance-derived details
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [x] All Paperclip CI gates are green on all four commits
- [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups
(on the fourth commit Greptile reviewed 8 files and added no comments;
all three earlier threads are resolved)
- [x] I will address all Greptile and reviewer comments before
requesting merge

🤖 Generated with [Claude Code](https://claude.com/claude-code)

---------

Co-authored-by: Bender (Fable) <bender-fable@users.noreply.github.com>
Co-authored-by: Claude Fable 5.1 <noreply@anthropic.com>
Co-authored-by: devinfoley <139239+devinfoley@users.noreply.github.com>
canary/v2026.1011.0-canary.10
2026-10-11 11:19:44 -07:00
85f4205de3 perf(test): reuse a migrated embedded Postgres template across suites (#15861)
## Thinking Path

> - Paperclip is the open source app people use to manage AI agents for
work
> - Pull requests to this repository run a large CI matrix. The slowest
check sets the time a contributor waits for a green run.
> - After #15853, the twelve `server (n/12)` shards are the slowest
check in every fully green PR run created since its merge (518s to 548s;
`Build` is 482s to 504s). Each shard is about 60s of setup and 454s to
490s of Vitest, with one worker, so its wall time is the sum of its
suites.
> - From two shard logs, 22 to 24 of the 71 to 74 suites in a shard
start an embedded Postgres cluster. Each one runs `initdb`, starts the
cluster, and applies all 331 migrations before its first test. The
smallest such suite takes 6s with one or two trivial tests. On top of
that, the `getEmbeddedPostgresTestSupport` probe starts and stops a
second throwaway cluster at import time in 19 of those suites, which is
why their per-file import overhead is 3.5s to 4.1s against 0.9s to 1.0s
for suites without Postgres.
> - A cluster data directory that was shut down cleanly can be copied
and started again as an independent cluster, and the migrated schema is
the same for every suite.
> - This pull request builds one migrated cluster per host, publishes
its data directory as a template under the OS temp directory, and starts
every later suite from a copy of it. The probe reuses the template
instead of starting a cluster.
> - The benefit is about 7s to 8s per Postgres suite on the CI runners
(measured 3.2s to 0.35s per start and 0.75s to 0.03s per probe locally),
about 120s to 170s per server shard, and a faster local test loop for
every suite that uses the fixture.

## Linked Issues or Issue Description

**What existing behavior does this improve?**

The `server (n/12)` PR checks are the slowest check in every fully green
PR run since 2026-10-11 05:27Z. Their Vitest step runs suites one at a
time, and about a third of each shard's time is embedded Postgres setup
that produces the same migrated cluster every time.

**Subsystem affected**

Test infrastructure: the embedded Postgres test fixture in
`@paperclipai/db` (`packages/db/src/test-embedded-postgres.ts`), used by
349 server suites, the db package suites, and the CLI suites.

**Current behavior**

`startEmbeddedPostgresTestDatabase` runs `initdb`, starts the cluster,
creates the database, and applies all 331 migrations for every suite.
`getEmbeddedPostgresTestSupport` starts and stops a second throwaway
cluster once per test file, because the module-level cache does not
survive Vitest's per-file isolation. Measured locally: 3.2s per suite
start plus 0.4s cleanup, and 0.75s per probe. On the CI runners the
smallest Postgres suite takes 6s and the probe adds 2.5s to 3s of import
time per file.

**Proposed behavior**

The first caller on a host builds one migrated cluster, stops it, and
renames its data directory to
`$TMPDIR/paperclip-embedded-postgres-templates-<uid>/<key>`. Every later
caller copies the template (about 90 MB) and starts Postgres on the
copy, then still runs `ensurePostgresDatabase` and
`applyPendingMigrations`, which are no-ops on a current template. The
probe treats a published template as proof that the host can run the
cluster. The key hashes the embedded-postgres version, the initdb flags,
the user, and the name and content of every migration file plus the
journal, so a changed migration builds a new template.
`PAPERCLIP_TEST_POSTGRES_TEMPLATE=0` bypasses the cache. Any template
failure falls back to the fresh path.

A template is a Postgres data directory, and starting it executes its
configuration, so the cache is private to the current OS user: the root
name carries the uid, the root is created with mode 0700, and both the
root and each template are used only when `lstat` shows a real directory
(not a symlink) owned by the current user with no group or world write
bit. A root that fails those checks (for example one pre-created by
another user in a shared `/tmp`) is left alone and the process uses
fresh clusters.

**Reason and benefit**

The slowest check decides the wall-clock time of every PR run. Measured
locally, a template start takes 0.3s to 0.4s instead of 3.2s, cleanup
0.15s instead of 0.43s, and the probe 0.03s instead of 0.75s. Four
server suites that passed in both modes dropped by 3.4s to 6.0s each;
the db `backup-lib` suite dropped from 42.7s to 20.9s. The CI runners
are about twice as slow, so the expected saving per server shard is 120s
to 170s.

**Breaking changes**

None. The returned database is fully migrated in both paths, each suite
still gets its own cluster and data directory, and a failure on the
template path falls back to the existing fresh path.

## What Changed

- `packages/db/src/test-embedded-postgres.ts`: adds the template cache.
`computeEmbeddedPostgresTemplateKey` hashes the inputs that determine a
migrated cluster. `buildEmbeddedPostgresTemplate` starts a fresh cluster
through the existing bounded retry, creates the database, applies
migrations, waits for the real `stop()` (30s bound), and publishes the
data directory with an atomic rename; a concurrent builder that loses
the rename discards its copy.
`startEmbeddedPostgresFromTemplateWithRetry` copies the template into a
fresh temp directory, sets mode 0700, and starts the cluster with the
same per-attempt port and directory rotation as the fresh path.
`startEmbeddedPostgresTestDatabase` tries the template first and falls
back to the fresh path with one warning per process.
`probeEmbeddedPostgresSupport` returns supported when a template exists
or can be built, and keeps its throwaway-cluster path for the case where
the template could not be published. Templates for other keys are pruned
after seven days. The connection strings and initdb flags move into
shared constants; no other behavior changes.
- `packages/db/src/test-embedded-postgres.test.ts`: two unit tests for
the key (stable for identical inputs; changes with migration content, a
new file, flags, version, or user; hashes this package's real migrations
directory) and two real-cluster tests (the published template is
complete and private, a suite starts from it in `template` mode with
migrations up to date, a table written to one copy is not visible in the
next copy, and `PAPERCLIP_TEST_POSTGRES_TEMPLATE=0` runs the `fresh`
path). The real-cluster tests skip on hosts without embedded Postgres,
like every other fixture suite.
- `doc/DEVELOPING.md`: a short section under Test Commands describing
the template, its key, and the bypass variable.

**Review fixes (second commit), one per finding:**

- Private cache root (Greptile P1, Superagent P2). The root is
`$TMPDIR/paperclip-embedded-postgres-templates-<uid>` (user name on
Windows), created with mode 0700. `prepareTemplateRootDir` and
`isUsableTemplate` both reject, via `lstat`, anything that is a symlink,
not a directory, owned by another uid, or writable by group or others; a
rejected root logs one warning and the process uses fresh clusters. A
root created by the first commit with a wider mode is narrowed to 0700
if this user owns it.
- Template failures never skip suites (Greptile P1).
`getEmbeddedPostgresTemplateDir` no longer rejects. A build or root
failure resolves `null` with one warning, and
`probeEmbeddedPostgresSupport` then runs the throwaway-cluster probe, so
only a cluster that cannot start reports `supported: false`. A migration
that cannot apply fails the suite on the fresh path instead of being
hidden by `describe.skip`.
- Idle-based pruning (Greptile P2). Each reuse refreshes the template's
timestamp with `utimes`, so the seven-day prune measures idle time. A
template that disappears after a process resolved its path is not
retried five times: `startEmbeddedPostgresFromTemplateWithRetry` checks
the template before each copy and throws at once, the suite falls back
to a fresh cluster, and the fallback forgets the path so the next caller
in that process rebuilds the template.
- The template-path test enables the cache for itself and restores the
original `PAPERCLIP_TEST_POSTGRES_TEMPLATE` value afterwards (Greptile
P1), so the suite passes under `PAPERCLIP_TEST_POSTGRES_TEMPLATE=0` as
well.
- Eight new tests: `isUsableTemplate` accepts a private cluster
directory and rejects a missing `PG_VERSION`, a leftover
`postmaster.pid`, a symlink, and (POSIX) group- or world-writable modes;
a world-writable pre-created root and a symlinked root both fall back to
fresh clusters, publish nothing, log one warning, and still report
`supported: true` from the probe; a ten-day-old template is refreshed on
reuse; a pruned template is rebuilt on the next start; and a template
build that fails after the cluster started falls through to the fresh
probe. The tests that need an empty cache point `os.tmpdir()` at a
scratch directory (`TMPDIR`, `TEMP` and `TMP` together, so the redirect
holds on Windows as well) and restore it.

**Review fixes (third commit, e8f8e9c8), one per finding:**

- Fallback test on Windows (Greptile P1). `useScratchTmpdir` set only
`TMPDIR`, which Windows `os.tmpdir()` ignores, so the one scratch-root
test that runs on every platform would assert on paths outside the
scratch root there. The helper now sets and restores `TMPDIR`, `TEMP`
and `TMP` together, and that test asserts `os.tmpdir() === scratch`
before it checks any path under it.
- Timestamp test runs on its own (Greptile P2). The test assumed an
earlier test had published a template; under
`PAPERCLIP_TEST_POSTGRES_TEMPLATE=0` the probe does not, so a
name-filtered run threw `ENOENT` from `utimes`. It now starts and cleans
up one suite first, which builds the template when nothing has, and
asserts `isUsableTemplate` before ageing it.

## Verification

- `pnpm --filter @paperclipai/db exec tsc --noEmit`: clean (both
commits).
- `pnpm --filter @paperclipai/db exec vitest run
src/test-embedded-postgres.test.ts`: 15 pass (12 new across both
commits) with the template root absent (first run builds it), with it
present, and with `PAPERCLIP_TEST_POSTGRES_TEMPLATE=0`.
- After the review fixes: `client.test.ts` and `backup-lib.test.ts` (29
tests) pass on the template path, and
`agent-action-audit-routes.test.ts` and `status-cards.test.ts` (36
tests) pass through the server route harness. The second commit's CI run
([38121021162](https://github.com/paperclipai/paperclip/actions/runs/38121021162))
passed every check: `server (n/12)` jobs 277s to 425s, Vitest `Duration`
219s to 365s, no fallback warning in any shard.
- Third commit: reproduced the Greptile P2 on the old file first
(`PAPERCLIP_TEST_POSTGRES_TEMPLATE=0 vitest run
src/test-embedded-postgres.test.ts -t "refreshes the template"` on an
empty cache root fails with `ENOENT … utime`), then with the fix the
same command passes, and the full file passes 15/15 on a cold cache, a
warm cache, and with the bypass set. `tsc --noEmit` clean.

**Measured on this PR's first CI run
([38117892083](https://github.com/paperclipai/paperclip/actions/runs/38117892083)),
which ran the branch's fixture in every server shard:**

| | Before (runs 38114982393, 38115279131, 38115459196) | This PR's run
|
| --- | --- | --- |
| Vitest `Duration` per `server (n/12)` shard | 454s to 490s | 224s to
337s |
| `server (n/12)` job | 518s to 548s | 286s to 401s |
| Slowest check in the run | a server shard | `Build`, 453s |

No shard logged a fixture fallback warning, so every Postgres suite in
the run started from the template.
- `pnpm --filter @paperclipai/db exec vitest run
src/status-card-migrations.test.ts
src/nested-skill-folders-migration.test.ts
src/chat-github-migration.test.ts
src/question-response-delivery-migration.test.ts src/client.test.ts`: 5
files, 24 tests pass on the template path. These suites drop indexes,
re-run migration files, and create extra databases on the cluster, so
they cover the semantics the template must preserve.
- Four server suites run with `PAPERCLIP_TEST_POSTGRES_TEMPLATE=0` and
then with the template, all passing in both modes:

| Suite | Fresh path | Template path |
| --- | --- | --- |
| `server/src/__tests__/agent-action-audit-routes.test.ts` (11 tests) |
17.9s | 14.6s |
| `server/src/__tests__/status-cards.test.ts` (25 tests) | 22.2s | 18.6s
|
| `server/src/__tests__/plugin-managed-routines.test.ts` (3 tests) |
18.2s | 14.3s |
| `server/src/__tests__/issue-thread-interactions-service.test.ts` (106
tests) | 19.0s | 12.9s |
| `packages/db/src/backup-lib.test.ts` (9 tests) | 42.7s | 20.9s |

- Per-operation timings on the same host: fresh `initdb` + start +
create database + 331 migrations 3.2s, cleanup 0.43s; template copy
0.20s to 0.23s, start from copy 0.03s to 0.04s, `ensurePostgresDatabase`
0.013s, `applyPendingMigrations` fast path 0.03s to 0.04s, stop 0.03s.
Probe with the template on disk 0.03s (was 0.75s). Template size 87 MB,
3215 files.
- This PR's own server shards run the branch's fixture, so their Vitest
`Duration` lines show the saving directly. Expected on this PR's run:
`server (n/12)` about 330s to 430s (was 440s to 548s on runs
38114982393, 38115279131 and 38115459196), and the slowest check moves
to `Build` (482s to 504s).

**Measured on the three fully green `master` PR runs created after
#15853 merged** (slowest server shard logs):

| Run | Server shards | Vitest `Duration` (slowest shard) | Postgres
suites in it | Their reported duration | Their import overhead |
| --- | --- | --- | --- | --- | --- |
| 38115459196 | 476s to 548s | 483.8s (tests 72%, import 24%) | 22 of 71
| 197s | 83s |
| 38114982393 | 409s to 518s | 452.8s (tests 65%, import 30%) | 24 of 74
| 264s | 98s |

## Risks

- Low risk to correctness. The template is a cleanly stopped cluster
produced by the same `initdb` flags and the same migration runner as the
fresh path, and each suite still runs `ensurePostgresDatabase` and
`applyPendingMigrations` on its copy. Each suite gets its own copy, its
own port, and its own data directory, so isolation between suites is
unchanged.
- A stale template is prevented by the key. If a migration file, the
journal, the embedded-postgres version, the initdb flags, or the user
changes, the key changes and a new template is built. Even if a stale
template were used, `applyPendingMigrations` on the copy would bring it
up to date.
- Concurrent first use (for example the file-parallel db project) can
build the same template twice. The rename is atomic, so one copy wins
and the other is discarded; a template that exists is always complete.
The loser pays one extra fresh start, which is what every suite paid
before.
- The template root lives under the OS temp directory and holds about 90
MB per key. Keys that have not been used for seven days are pruned when
a new template is built; each reuse refreshes the timestamp.
- A template is executable configuration, so the cache is only used when
the root and the template are private directories of the current user
(ownership, no symlink, no group or world write bit). On a host where
another user pre-created the path, the process logs one warning and uses
fresh clusters. Windows has no uid, so there the check is
directory-only; its temp directory is already per user.
- Any failure on the template path (root checks, build, copy, start,
publish) falls back to the fresh path and logs one warning per process,
so a broken cache can make a suite slower but never fail it or skip it.
The guard tests assert the mode, so a silent fallback on CI would fail
`test-embedded-postgres.test.ts` rather than hide.
- Hosts that cannot run embedded Postgres still get `supported: false`
with the real Postgres output, now from the throwaway probe: a failed
template build is one warning, then the probe decides. On such a host
the probe costs one extra failed start attempt cycle per file compared
with the first commit; every suite on that host skips anyway.

## Model Used

- Claude (Anthropic), model ID `claude-fable-5-1`, running as a
Paperclip agent through the Claude local adapter with tool use (shell,
file edits, GitHub CLI). The agent collected the CI data, made the
change, ran the tests, and wrote this description.

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have searched GitHub for duplicate or related PRs and linked
them above
- [x] I have either (a) linked existing issues with `Fixes: #` / `Closes
#` / `Refs #` OR (b) described the issue in-PR following the relevant
issue template
- [x] I have not referenced internal/instance-local Paperclip issues or
links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip`
URLs)
- [x] My branch name describes the change (e.g. `docs/...`, `fix/...`)
and contains no internal Paperclip ticket id or instance-derived details
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [x] All Paperclip CI gates are green (53 checks green on both run
38117892083 and run 38121021162; the third commit re-runs them)
- [ ] Greptile is 5/5 with no open P2s, recommendations, or follow-ups
(1/5 on the first commit, 4/5 on the second; every finding so far is
fixed and answered, and Superagent confirmed its fix; re-review of the
third commit pending)
- [x] I will address all Greptile and reviewer comments before
requesting merge

🤖 Generated with [Claude Code](https://claude.com/claude-code)

---------

Co-authored-by: Bender (Fable) <bender-fable@users.noreply.github.com>
Co-authored-by: Claude Fable 5.1 <noreply@anthropic.com>
Co-authored-by: devinfoley <139239+devinfoley@users.noreply.github.com>
2026-10-11 11:19:13 -07:00
Devin FoleyandPaperclip 4b59e2a2ec fix(server): allow idle sleep with saved AI auth and verified lease history (#15897)
## Thinking Path

> - Paperclip is the open source app people use to manage AI agents for
work.
> - Automatic idle sleep must preserve accepted work, cleanup and
recovery.
> - Saved AI login connections are configuration without independent
workers.
> - Failed ephemeral leases can remain after their resources have
stopped.
> - Detached subscription observations and quota refreshes can outlive a
response.
> - This pull request distinguishes inert configuration and verified
history from unfinished work.
> - The benefit is safe idle eligibility while keeping credentials and
audit history.

## Linked Issues or Issue Description

**What happened?**

An active saved AI login blocks idle sleep after its login and agent
runs finish. A failed ephemeral lease also blocks after successful
cleanup and provider termination. The connection guard currently hides
detached quota and subscription work that can outlive the request that
started it.

**Expected behavior**

An idle instance can sleep with saved AI credentials and verified
failed-lease history. Accepted refresh work, recovery journals,
unfinished login sessions, pending cleanup and run accounting must still
block.

**Steps to reproduce**

1. Save an AI connection with purpose `ai`, transport `runtime_auth` and
status `active`.
2. Finish login and all agent work, then acquire an owned idle drain.
3. Read the idle safety report. The saved connection alone reports
background work.
4. Repeat with a failed ephemeral lease whose exact provider termination
and finished run are recorded. Its history also reports background work.

**Paperclip version or commit**

Based on `0bbd586a2f6`, after updates from master.

**Deployment mode**

Single-process managed or self-hosted server using the owned idle-drain
protocol.

Related work: #15522, #15761 and #15851. Searched open and closed pull
requests for related idle-sleep changes. The open accounting recovery
work in #15879 is separate; this change does not settle or discard
accounting debt.

## What Changed

- Exempt active saved AI runtime-auth configuration from the connection
sleep check. Other connection types and unknown states keep their
existing checks.
- Track detached subscription discovery and provider observations until
their actual promises settle.
- Track underlying quota work through an HTTP timeout, including an
OAuth exchange and the save of its replacement credential.
- Inspect the credential-recovery directory without reading credential
bytes. Journals, probes, temporary files, unexpected entries and read
failures keep sleep blocked. Empty company directories left by
successful recovery permit sleep.
- Exempt a failed ephemeral lease only after successful cleanup, a
release timestamp, an exact company/run/lease/resource termination
receipt, and a finished run without retry or accounting debt. Export and
cleanup intents still block.
- Use the same failed-lease proof when checking finished login-session
cleanup.
- Add PostgreSQL and filesystem regression tests and document the
behavior.

## Verification

- Four focused suites passed: 186 tests covering durable guard
decisions, local recovery, detached subscription work and quota
timeouts.
- `pnpm build` passed.
- `pnpm -r typecheck` passed.
- `pnpm --filter @paperclipai/server build` and a final server
TypeScript check passed after the directory-scanner cleanup.
- The final directory-scan recheck passed all 18 tests.
- The original-base `pnpm test:run` attempt found three local failures.
It was stopped before completion to update the branch after two master
changes. All three also reproduce on unchanged master `e733bddc45e`: two
Git default-branch fixtures in `workspace-runtime.test.ts` and one
native runner recovery fixture in `native-session-resume.test.ts`.
- Both Git fixtures pass with a command-scoped
`init.defaultBranch=master` setting. The native fixture fails with the
same result on both branches. No global Git setting was changed.
- All CI gates passed on the final head
`ff63497d9bef40f5f00567bc729fb17536cfe136`: [complete CI
run](https://github.com/paperclipai/paperclip/actions/runs/38156312722).
The only skipped checks are the two path-gated Storybook jobs.
- Greptile Apex scored the final head 5/5 with no actionable findings
and no unresolved review threads. The branch has no merge conflicts with
master.
- After the master update, `pnpm build` and `pnpm -r typecheck` passed
again. All four focused suites passed again: 186 tests.
- Staging deployment and live sleep/wake verification are pending the
Core merge and the verified private Cloud build. No production rollout
has been started.

## Risks

- The failed-lease exception is deliberately narrow. Older records
without exact termination evidence or a complete run receipt continue to
block.
- Pending OAuth recovery blocks sleep until it is recovered. No
credential, history, cleanup obligation or accounting receipt is
deleted.
- The existing owned drain, ingress fence, local-work generation checks,
plugin drain and backup checkpoint remain required.
- No schema migration or provider mutation is introduced. Roll back to
the previous application release to restore the conservative guard
behavior.

## Model Used

OpenAI GPT-6 (Codex), with repository inspection, code editing, test
execution and read-only provider analysis. No additional model version
or context-window size was supplied by the runtime.

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have searched GitHub for duplicate or related PRs and linked
them above
- [x] I have either linked existing issues or described the issue in-PR
following the relevant issue template
- [x] I have not referenced internal/instance-local Paperclip issues or
links
- [x] My branch name describes the change and contains no internal
ticket id or instance-derived details
- [x] I have run focused tests locally and they pass
- [x] I have added or updated tests where applicable
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented risks
- [x] All Paperclip CI gates are green
- [x] Greptile is 5/5 with no unresolved comments
- [x] I will address all reviewer comments before requesting merge

Co-authored-by: Paperclip <noreply@paperclip.ing>
canary/v2026.1011.0-canary.9
2026-10-11 10:01:57 -07:00
Devin FoleyandPaperclip 0bbd586a2f fix(server): wait for workspace restore before shutdown lease release (#15857)
## Thinking Path

> - Paperclip is the open source app people use to manage AI agents for
work.
> - Server shutdown must stop agent execution and preserve its files.
> - Legacy adapters export workspace and instruction changes during
settlement.
> - Shutdown released their sandbox leases before this export finished.
> - The provider closed command access, so the later Git export failed.
> - This change stops an owned adapter through its cancellation control
and waits for settlement before release.
> - A bounded timeout retains the exact sandbox source behind the
existing repair gate.

## Linked Issues or Issue Description

**What happened?**

A server restart interrupted a remote legacy run. Shutdown began
releasing its sandbox lease while the adapter was still stopping its
provider and restoring files. The sandbox provider closed command
admission. The adapter's later Git export failed with
`workspaceRestoreFailure: restore_failed`, leaving the task held for
workspace repair.

**Expected behavior**

Shutdown keeps the exact lease available through provider stop,
instruction collection, and workspace restore. Cleanup follows adapter
settlement. A restore that exceeds the bounded deadline keeps its exact
source for repair before later execution.

**Steps to reproduce**

1. Start an owned legacy adapter with a sandbox workspace.
2. Send SIGTERM to the server while the adapter is active.
3. Delay adapter settlement until after the shutdown terminal write.
4. On the base branch, shutdown releases the lease without cancelling or
joining the adapter. Its later export can encounter closed provider
admission.

Related: #14311 defines the provider-stop boundary for file collection.
#15042 closes run admission during shutdown. This fix orders sandbox
release after the adapter's existing file settlement.

## What Changed

- Cancel each owned legacy adapter and join all affected runs within one
shared 30-second window.
- Commit a durable fence on the exact sandbox before exposing
interruption. Other cleanup workers defer while export is pending.
- Permit the exact aborted owner's stop-only request so shutdown does
not block provider termination.
- Reload current execution evidence after settlement. Release leases
even when the adapter's ordinary terminal write wins the shutdown race.
- Claim the current fence before recording timeout retention. An old
snapshot cannot create a repair hold after successful settlement.
- Recover fenced sources after controller loss, including released stop
receipts. Block reuse or destruction of the physical allocation while
file recovery is required, including direct resume and destroy calls
with historical lease snapshots. Convert failed ordinary cleanup into
stop-only recovery after its existing attempt settles.
- Allow 90 seconds for shutdown in shipped Compose services. Preserve
native runner restart ownership and unregistered process behavior.
- Add database regressions for restore order, timeout, concurrent
cancellation, another cleanup worker, controller loss, stale snapshots,
stop-only settlement, and completion races. Document the shutdown order.

## Verification

- The original ordering regression failed on the base implementation.
- Latest recovery and environment runtime suites: 190 tests passed. The
other four focused suites passed 136 tests, covering run control,
shutdown, file repair, server startup, and environment runtime.
- Server typecheck passed. Full `pnpm -r typecheck` and `pnpm build`
passed on the latest head.
- `pnpm test:run` was run locally. Its general-server group passed
18,559 tests and failed seven, with one unhandled error. The long run
started before the review fixes, then loaded newer regression cases
against older transformed modules. The current focused suites pass in a
fresh process. The damaged-prior-epoch native-session-resume failure
also reproduces on unchanged base commit de9ab8e7e0. An isolated rerun
of the Google Workspace connection case passed. Later full-run groups
did not run because general-server stopped on failure.
- The prior CI startup import failure is fixed: expiry loads the
terminal recorder only when it needs to pin recovery. Its focused
startup suite passes.
- Apex reviewed commit c564320b16 at 5/5. All review threads are
resolved. All latest-head CI gates passed. The branch has no merge
conflicts.

## Risks

Owned legacy adapters share a 30-second shutdown window. The wait is
bounded. Timeout cleanup uses the existing stop-and-retain and workspace
repair paths. A timeout can require manual file verification even if a
late restore succeeds. No database migration or API change is needed.

## Model Used

OpenAI GPT-6 through Codex, with repository inspection, code editing,
shell execution, and test tools. The session identifies the model family
as GPT-6. It does not expose a more specific runtime model ID or context
window size.

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have searched GitHub for duplicate or related PRs and linked
them above
- [x] I have either (a) linked existing issues with `Fixes: #` / `Closes
#` / `Refs #` OR (b) described the issue in-PR following the relevant
issue template
- [x] I have not referenced internal/instance-local Paperclip issues or
links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip`
URLs)
- [x] My branch name describes the change (e.g. `docs/...`, `fix/...`)
and contains no internal Paperclip ticket id or instance-derived details
- [x] I have run tests locally and they pass (focused suites; full local
limitations are listed above)
- [x] I have added or updated tests where applicable
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [x] All Paperclip CI gates are green
- [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups
- [x] I will address all Greptile and reviewer comments before
requesting merge

---------

Co-authored-by: Paperclip <noreply@paperclip.ing>
2026-10-11 09:30:59 -07:00
Devin FoleyandPaperclip 5847f047c7 fix(connections): retire requests for already available tools (#15856)
## Thinking Path

> - Paperclip is the open source app people use to manage AI agents for
work.
> - Connection cards let users provide the access an agent needs.
> - Users can complete setup in Apps while an earlier card stays
pending.
> - A stale card can then cancel recovery despite valid existing access.
> - This change verifies existing access and expires the obsolete
request.
> - It records a system outcome and sends one durable continuation.
> - Approval, identity, permission, and workspace recovery gates remain
in place.

## Linked Issues or Issue Description

**What happened?**

An ordinary tool connection request stayed pending after the addressed
user connected the service in Apps. A later conversation retry was
cancelled with `issue_waiting_for_response`.

**Expected behavior**

A request expires when the same user and requesting agent already have
usable access. The agent gets a durable tool refresh. The system records
no new human approval.

**Steps to reproduce**

1. Have an agent request a tool connection on an active task.
2. Connect the service through Apps with the addressed user's existing
grant, agent install, and allowed tools.
3. Let a conversation run stop and retry. The pending card still blocks
the retry on the base branch.

Related: #12345 introduced the connection request flow. This fix uses
its existing access checks and delivery queue.

## What Changed

- Verify company, task ownership, user identity, membership, health,
grants, installs, and task tool policy before expiring an ordinary
request.
- Preserve AI account, channel, additional permission, and upstream
provider requests on their existing paths.
- Save the system outcome, audit event, and continuation in one
transaction. Notify an idle delivery worker when a request commits.
- Recheck access and other questions or approvals before delivery,
retry, final dispatch, and native projection. Refresh system
observations for an authorized replacement account.
- Rearm delivery when access changes before provider work starts. Verify
the host's admission receipt against execution evidence before allowing
retry without a repair incident.
- Require the current delivery claim when marking an attempt complete.
An old completion cannot overwrite a rearmed continuation.
- Add embedded-Postgres regressions for permissions, policy,
concurrency, restart, replacement accounts, both dispatch gates, and the
delivery race. Keep genuine workspace repair holds blocking.

## Verification

- Latest-head connection, wake-context, dispatch, and legacy recovery
suites: 124 tests passed. The connection suite includes 44 real-Postgres
cases.
- Server typecheck passed. Full `pnpm -r typecheck` and `pnpm build`
passed on the latest head.
- `pnpm test:run` was run locally. Its general-server group passed
18,583 tests and failed 20. That long run started before the review
fixes, then loaded new test cases against modules transformed before
those fixes. The affected latest-head suites pass in a fresh process.
- One full-run failure also reproduces on unchanged base commit
de9ab8e7e0: native-session-resume's damaged-prior-epoch replacement
case. It is outside this change. Full-run groups after general-server
did not run because that command stopped on failure.
- Apex reviewed commit 96b96297f4 at 5/5. All review threads are
resolved. All latest-head CI gates passed. The branch has no merge
conflicts.

## Risks

A false readiness result could retire a request too early. The fix
reuses the runtime access selection rules, makes no new grants, and
rechecks access at delivery. Ordinary expired requests do not authorize
continuation. A failed workspace restore still requires repair through
the existing gate. No schema migration is needed.

## Model Used

OpenAI GPT-6 through Codex, with repository inspection, code editing,
shell execution, and test tools. The session identifies the model family
as GPT-6. It does not expose a more specific runtime model ID or context
window size.

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have searched GitHub for duplicate or related PRs and linked
them above
- [x] I have either (a) linked existing issues with `Fixes: #` / `Closes
#` / `Refs #` OR (b) described the issue in-PR following the relevant
issue template
- [x] I have not referenced internal/instance-local Paperclip issues or
links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip`
URLs)
- [x] My branch name describes the change (e.g. `docs/...`, `fix/...`)
and contains no internal Paperclip ticket id or instance-derived details
- [x] I have run tests locally and they pass (focused suites; full local
limitations are listed above)
- [x] I have added or updated tests where applicable
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [x] All Paperclip CI gates are green
- [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups
- [x] I will address all Greptile and reviewer comments before
requesting merge

---------

Co-authored-by: Paperclip <noreply@paperclip.ing>
canary/v2026.1011.0-canary.8
2026-10-11 09:30:45 -07:00
DottaandPaperclip abcd017898 Reject concealed managed publications in anonymous roots
Check the readable repository namespace independently of historical aliases, including existing reservations. Preserve unavailable unrelated folders and allow asynchronous chat edit verification its established polling budget.

Co-Authored-By: Paperclip <noreply@paperclip.ing>
2026-10-11 07:40:06 -05:00
DottaandPaperclip fa31e4ade7 Preserve native recovery transport and legacy workspace bindings
Fence host roots only for local and sandbox execution targets. Accept verified run-ID bindings for older native tasks and avoid unrelated historical path failures without weakening pending-acquisition guards.

Co-Authored-By: Paperclip <noreply@paperclip.ing>
2026-10-11 07:25:02 -05:00
DottaandPaperclip d66a2de539 Fence repository acquisition by durable physical root
Preserve empty-inventory admission and immutable recovery. Reserve managed or anonymous roots before acquisition and fence legacy recovery using its verified host binding.

Co-Authored-By: Paperclip <noreply@paperclip.ing>
2026-10-11 07:06:19 -05:00
DottaandPaperclip 0e0557f123 Fix repository trust and settled workspace recovery guards
Co-Authored-By: Paperclip <noreply@paperclip.ing>
2026-10-11 06:38:47 -05:00
DottaandPaperclip fed4802b72 Merge origin/master and integrate environment selection
Co-Authored-By: Paperclip <noreply@paperclip.ing>
2026-10-11 06:18:05 -05:00