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PaperClipAI/doc/runner-api-tools.md
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DottaandClaude Opus 5.5 4e519bd428 fix(chat): send writes with an empty responseText and point card declines to resolve-from-comment (#21050)
## Thinking Path

> - Paperclip is the open source app people use to manage AI agents for
work
> - Chat agents call the Paperclip API through `call_api` and find
routes with `search_api`
> - #21035 added a pre-send refusal for writes that carry
`responseText`, and new summaries for the question cancel and withdraw
routes
> - Full chat cohort 5 (OpenCode with DeepSeek v4.1 flash) showed that
both changes went too far
> - The refusal blocked a valid write that had an empty `responseText`,
and the summaries hid the route that records a person's decline
> - This pull request narrows the refusal and corrects the guidance text
> - The benefit is that valid writes go through on the first try, and
agents settle a declined card instead of leaving it pending

## Linked Issues or Issue Description

Refs #21035, #21002

**What happened?**
- inbox-search.restore-archive: DeepSeek sent `responseText: {}` with a
valid body on `POST /api/issues/{id}/inbox-archive`. The refusal from
#21035 rejected 24 POSTs in 3 minutes. The model did not drop the key,
and the run was cancelled at the 240s window. In cohort 4 the same POSTs
went through on the first try.
- questions-and-approvals.reject-and-revise: the person said "Do not
publish it; just make a draft I can review." The CEO quoted the cancel
summary ("an agent withdraws its own pending card with POST
.../withdraw"), saw that the person created the publish card, and left
the card pending. The plan decision did not settle. In cohorts 3 and 4
the CEO declined the card with `resolve-from-comment` (resolver policy
`anyone`).

**Expected behavior**
- A write with an empty or default `responseText` is sent once. A write
whose `responseText` sets a window is still refused before it is sent.
- The guidance says that withdraw is only for the agent's own obsolete
card, and that a person's explicit decline or answer goes through
`resolve-from-comment` when the card's resolver policy allows.

**Steps to reproduce**
Run the two chat cases above with OpenCode and DeepSeek v4.1 flash on
master.

## What Changed

- `call_api` (`assertRunnerApiDispatchable`): the check reads the raw
`responseText` value. `{}` or `{ offsetBytes: 0 }` on a write is dropped
and the write is sent. A `responseText` with `limitBytes` or a later
offset is still refused. `saveResponse: false` on a write was already
accepted; a test now covers it.
- OpenAPI: the cancel and withdraw summaries say that withdraw is only
for the agent's own obsolete card, and that a decline or answer on the
person's explicit instruction uses `POST .../resolve-from-comment` when
the resolver policy allows. The `resolve-from-comment` summary says it
also records a decline of a card the person created.
- `AGENT_CHAT_DIRECTIVE`: a person's explicit decline in chat answers a
pending confirmation with reject, whoever created the card. Withdraw
never records the person's decision.
- `doc/runner-api-tools.md`: describes the narrowed refusal.

## Verification

- `server/src/services/native-runtime/runner-api.test.ts`: new test
sends `POST /api/issues/{id}/inbox-archive` with a valid body and
`responseText: {}`, `{ offsetBytes: 0 }`, `saveResponse: false`, or
both. The request is sent exactly once. Red before the fix (3 of 4 cases
refused), green after. The refusal test for a `responseText` with
`limitBytes` stays.
- `server/src/__tests__/openapi-routes.test.ts`: new test for the
cancel, withdraw and resolve-from-comment summaries. Red before, green
after.
- `server/src/__tests__/agent-conversations.test.ts`: new directive test
for the decline rule. Red before, green after.
- Also passed: `runner-api.integration.test.ts`,
`native-case-tools.integration.test.ts`, server `tsc --noEmit`. SDK
public input pins: `--check` reports no change.
- Paid run (OpenCode + DeepSeek v4.1 flash) on this branch for
inbox-search.restore-archive, questions-and-approvals.reject-and-revise,
gateways-profiles.rotate-token and budgets-costs.repair-cost-recording:
4 of 4 cells passed on 3f20fb2bcc (run 43177772183); details in a PR
comment.

## Risks

- A write with a populated `responseText` is still refused, as in
#21035. Only the empty and default shapes change. A dropped empty
`responseText` changes nothing, because the server already removed it
from writes before sending.
- The directive grows by two sentences, which adds a small number of
prompt tokens per chat turn.

## Model Used

- Anthropic Claude Opus 5.5 (`claude-opus-5-5`) in Claude Code, with
tool use, shell execution and code editing.

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have searched GitHub for duplicate or related PRs and linked
them above
- [x] I have either (a) linked existing issues with `Fixes: #` / `Closes
#` / `Refs #` OR (b) described the issue in-PR following the relevant
issue template
- [x] I have not referenced internal/instance-local Paperclip issues or
links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip`
URLs)
- [x] My branch name describes the change (e.g. `docs/...`, `fix/...`)
and contains no internal Paperclip ticket id or instance-derived details
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [x] All Paperclip CI gates are green
- [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups
- [x] I will address all Greptile and reviewer comments before
requesting merge

🤖 Generated with [Claude Code](https://claude.com/claude-code)

---------

Co-authored-by: Claude Opus 5.5 <noreply@anthropic.com>
2026-11-12 02:09:14 -06:00

24 KiB
Raw Blame History

Runner API escape hatch

search_api and call_api extend the native runner when an available dedicated operation cannot express the requested work. Use set_task_monitor to schedule or clear a one-shot task check; after confirming the receipt, finish with yielded and continuation.kind: "monitor" to await that task’s timer. The monitor workflow remains preferred; REST calls use the same route authorization as legacy agents. Existing tools remain preferred; agents do not have to search before using them. Only two tool definitions are advertised. The API catalog is returned on demand, never injected into the initial prompt.

Default availability and operator controls

The escape hatch is enabled by default. No environment variable is required. The native hire_agent tool shares this availability policy. Set PAPERCLIP_RUNNER_API_TOOLS_ENABLED=false on the server to disable these tools. An explicit true also enables them; other explicit values fail closed.

Operators can restrict availability with PAPERCLIP_RUNNER_API_TOOLS_COMPANY_IDS, a comma-separated list of company UUIDs. An unset list allows every company; an explicitly empty list allows none. IDs must match exactly. This restriction also applies when the enabled flag is unset.

A server-owned binding can disable these tools for a baseline eval but cannot override an operator restriction. The server checks the policy when advertising tools, when accepting a call, and immediately before HTTP dispatch after preparing any files. Existing dedicated tools remain available. Operators must update the environment of each server process and restart it for deployment-level changes; this environment switch is not a live settings API.

All company, run, work-mode, credential, and route authorization checks below still apply.

Discovery and requests

{"query":"create project","limit":5}

Search is deterministic lexical ranking over OpenAPI paths, summaries and the old skill reference. It supports task/issue and other terminology, exact METHOD /api/path/{parameter} lookup, and opaque query/catalog-bound pagination. Results include resolved request schemas, response descriptions, authorization metadata, work modes, examples where available, and relevant dedicated tools with their supported parameters. limit defaults to five and is capped at ten.

{"operationId":"PATCH /api/projects/{id}","pathParams":{"id":"PROJECT_UUID"},"body":{"description":"Updated project description"}}

The catalog determines method and path. companyId is filled from the active binding. Scalars and arrays are accepted in query. body defaults to JSON; contentType supports text and raw uploads. files accepts entries containing exactly one authorized artifactId or task-workspace path, and an optional multipart field. No arbitrary URL, headers, authentication, or remote file URL can be supplied. Routes still validate payloads and enforce permissions.

Writes put every request field in body. A POST or PUT whose request schema names required fields, or a PATCH with a required body, is refused before it is sent when body (and files) are missing; the error names the received arguments and the shape to resend. query and the read-only options never carry request fields.

For lossless input to a local helper, call the separate save_api_response tool with an authorized non-sensitive GET operationId, pathParams and query. It has no request body and cannot run a write, so call_api's write path carries no read-only save option. This saves the complete response bytes as an immutable artifact even below the inline threshold. A zero-byte successful response instead returns empty: true, byteSize: 0 and data: null, without an asset or storage reservation. JSON empty results such as [] are nonempty bytes and export normally. Artifact receipts contain artifactId, byteSize and sha256. For artifacts up to 10 MiB, pass those exact values to download_artifact with a workspace-relative destination. Larger text snapshots (up to the 1 GiB capture limit) remain readable through GET /api/assets/{assetId}/content with responseText; follow nextOffsetBytes until null. They cannot be installed with download_artifact; narrow or paginate the source query for local helper input. Pass downloaded files to the helper instead of recreating JSON in model output. Pagination metadata remains in the receipt; each artifact contains one complete HTTP response, not all pages of a list. Continue list pagination explicitly. The file remains untrusted data.

Sensitive endpoints are rejected before dispatch. Older saved call_api calls that carry saveResponse: true remain valid for recovery and follow the same rules; saveResponse cannot be combined with responseText, and is rejected before dispatch for mutations. Denied or partial HTTP responses are not exported. Failed response receipts include the full byteSize and a truncated flag when their inline diagnostic body is incomplete. It uses the same capture limits, storage admission, actor access and integrity validation as automatic large-response artifacts. The original request runs once. Default inline behavior is unchanged when the option is absent.

Requests have a 16 KiB URL limit and 10 MiB request/upload limit. New response captures are limited to 1 GiB of decoded bytes. This is separate from the 24 KiB inline/page limit. The receiver rejects an oversized Content-Length before reading and counts actual bytes before writing, including chunked or compressed responses. Oversized responses return api_response_too_large; narrow the query or use the endpoint's own pagination. A mutation may already have committed, so inspect its state rather than retrying it to obtain a smaller response.

Connection setup and stalled response reads time out after 30 seconds. An active capture has a 10-minute total download deadline. Responses above 24 KiB stream into a private temporary file, then into a company-owned asset scoped to the issuing agent and responsible user (plus authorized board administrators). Ordinary task or run visibility does not grant access to another actor’s API snapshot. Explicit deliverables use the existing attachment/work-product flow. Memory stays bounded by the inline prefix and stream buffers. Binary responses also become assets; text previews are limited to 2,000 bytes.

Large captures reserve 1 GiB against a durable 4 GiB per-run capture budget before creating a file. A completed capture settles to its actual byte count; failed/interrupted captures retain the full reservation to bound retry loops. A process restart does not reset that budget. Small inline responses without explicit export and reads of existing assets need no reservation. Concurrent large captures are limited to two per company and four per server process, including the storage upload and temporary-file cleanup. Budget exhaustion returns api_response_capture_limit; concurrency exhaustion returns api_response_capture_busy without queuing more large transfers. A 20 GiB company-wide quota counts all stored runner-api snapshots plus unattached reservations. Admission uses a company database lock, so runs and server processes share the same quota. Existing snapshots from before this change count too. Attaching an asset converts its reservation to actual stored bytes; deleting the asset frees that capacity. Small binary snapshots also need storage admission. Ordinary inline text/JSON and existing-asset pages do not.

Operators can set PAPERCLIP_RUNNER_API_COMPANY_CAPTURE_MAX_BYTES to a positive safe integer of at least 1 GiB. Invalid values fall back to 20 GiB. No zero or unlimited setting is accepted. This quota covers API snapshots, not all company attachments. Storage capacity and backend limits still apply.

Handled pre-storage failures release the company reservation after temporary file cleanup, but retain the run's charge against retry loops. After a metadata transaction fails, a locking read must prove the asset was not committed before the uploaded object is removed. Confirmed cleanup refunds the company quota. A crash, failed cleanup, or ambiguous storage write keeps an unattached reservation. Operators must reconcile possible orphan files/objects before deleting that reservation from runner_api_response_reservations; no automatic expiry silently refunds possibly occupied space. Linked rows are removed with their asset. Deleting a run does not release its unattached company reservations.

Temporary files are removed on success or failure. Long captures revalidate the active run at least every MiB or at the next chunk after one second, and again before returning the snapshot. Stopping the run stops its download.

To inspect saved text without creating another artifact, call its authorized content operation with responseText:

{"operationId":"GET /api/assets/{assetId}/content","pathParams":{"assetId":"RETURNED_ARTIFACT_ID"},"responseText":{"offsetBytes":0,"limitBytes":8192}}

The result contains data as text (including JSON), plus responseText with offsetBytes, nextOffsetBytes, and totalBytes. Continue at nextOffsetBytes until it is null. Windows end at UTF-8 boundaries. The limit defaults to 24 KiB and accepts 4–24,576 bytes. The server rejects binary content, invalid UTF-8, and offsets inside a code point or beyond the response. This option only works with GET; never repeat a mutation to retrieve another part of its response. On a write, an empty or default responseText ({} or offsetBytes: 0) and saveResponse: false change nothing, so they are dropped and the write is sent once. A new write whose responseText sets a window (limitBytes or a later offset) is refused before it is sent: it never carries request fields, so resend the write once without it and with its fields in body. Older saved calls stay valid for recovery. Read the saved artifact for a stable snapshot instead of paging a changing live response. A text-window call against a live response above 24 KiB also returns that snapshot's artifact reference; continue on its content operation. A saved asset page never creates another asset. An unpaged asset read also fetches only a bounded preview and returns the existing reference instead of copying the file. Offsets and total sizes use safe integer byte counts, including values above 2 GiB. Existing assets larger than the 1 GiB capture limit remain readable because each request transfers only a bounded range. Request/upload limits and all route authorization remain. Saved asset pages use authenticated HTTP byte ranges. The storage provider reads only the requested window, with at most two extra bytes for UTF-8/EOF handling. The client validates Content-Range, the total size, and the received byte count; it rejects unsupported or inconsistent ranges instead of downloading the whole asset for every page. Other GET routes are fetched once in full to create the snapshot, so use the returned asset for subsequent pages. S3 uses streamed multipart uploads for large snapshots. Asset sizes are stored as PostgreSQL bigint, preserving the existing numeric API shape.

Verified artifact installation

Native standard-mode runs can use download_artifact to install an authorized saved API artifact into the admitted execution workspace. Pass artifactId, a workspace-relative destination, and the exact saved byteSize and sha256. The parent directory must already exist. The transfer is bounded to 10 MiB; larger snapshots remain readable through the existing paged content API.

The controller reuses asset content authorization (including company, capture owner and responsible-user restrictions), checks the complete stored bytes, then uses the lease-owned command runner for remote execution. The execution host checks size and SHA-256 on a private staging file before atomic create-only publication. Linux directory descriptors reject parent/destination symlinks and traversal. Existing different files are never overwritten; an identical retry verifies the existing file. A lost promotion acknowledgement is an unknown outcome: the native recovery path rechecks current authority and verifies the destination against the same size and hash without installing again. Missing or conflicting destinations return tool errors. An explicit identical retry remains safe. Interrupted staging can leave a reserved scratch file if cleanup cannot reach the provider, but never a completed destination. File synchronization after the turn remains owned by the normal workspace lifecycle.

Current support is Linux local execution and remote native command-runner transports (including Daytona and SSH). Plugin-owned tasks without an installer, Dot, Muse, Grok and nonstandard work modes do not advertise this capability. The API-tool rollout policy can disable it. Every attempt rechecks live task/run and content authority before storage reads and promotion, and writes content-free runner.artifact_install audit records. No API credentials enter the execution command. Stored content remains untrusted: installation does not promote source trust, execute artifact instructions, or provide an alternative for content that screening denied. Existing API paging, upload and deliverable tools keep their current contracts.

The synthetic regression in server/src/services/native-runtime/artifact-transfer.integration.test.ts verifies 388131 Unicode/escape-containing bytes and independent downstream hashing with real PostgreSQL and filesystem operations. Filesystem fault tests exercise the actual command with simulated provider transport; they do not establish a live Daytona RPC or deployed recovery.

Image generation for OpenAI API-key Codex agents

Codex shows its built-in image_gen tool only when it signs in with ChatGPT. A Codex agent that uses an OpenAI API key does not get that tool. The runner also keeps the provider key out of the agent's shell, so the imagegen skill's scripts/image_gen.py fallback cannot run.

For these agents, the controller advertises generate_image. The tool is advertised only when all of these conditions are true:

  • The run is a native Codex standard-mode run.
  • The run was admitted on an OpenAI api_key connection with no custom routing.
  • The run has a workspace.

Dot, Muse, Grok, native reviews and plugin-owned tasks do not get the tool.

The server reads the key from that same connection on each call. It sends the key only to https://api.openai.com/v1/images/generations (model gpt-image-2). The key never enters the provider process, the execution command or the tool result.

Every call does these checks again before any spend:

  • The live run, task and budget authority.
  • issue:mutate permission.
  • The connection grant, audience and agent installation.

A budget hard-stop that pauses the agent refuses the call before OpenAI is contacted.

The PNG is saved as a new, create-only file in the workspace root:

  • Local hosts use symlink-confined opens.
  • Remote targets use the same installer as download_artifact.

The result returns the relative path, the size and the SHA-256.

Each generated image records one cost_events row (metered_api, costStatus: "estimated") from a reviewed gpt-image-2 rate card. The row is recorded even when saving the image fails. Each call also writes content-free runner.image_generate audit records.

A per-call receipt in the run result makes a retried or recovered call replay the first result instead of paying again.

Media files and upload limits

The 1 GiB limit covers new snapshots returned by call_api, such as large JSON exports or binary API downloads. It does not raise attachment upload limits or limit files an agent creates and edits inside its workspace. Saved asset downloads stream from storage and support byte ranges, including video seeking.

PAPERCLIP_ATTACHMENT_MAX_BYTES separately defaults to 10 MiB for uploads and native file handoffs. call_api uploads also have their own 10 MiB limit. Several upload and handoff paths buffer complete files in memory; raising those defaults to GiB sizes requires streaming ingestion and corresponding admission/budget controls first. For a future video attachment workflow, 2 GiB per streamed file is a reasonable default, with an operator override and storage quotas. Do not claim that this response-paging change enables GiB attachment uploads.

Tool responses identify the HTTP route with apiOperationId. The native protocol reserves operationId and callId for semantic tool-call identity; API metadata must not masquerade as that envelope. Saved mutation receipts are normalized at the tool boundary as well, without repeating their HTTP request. All redirects are refused. Interrupted mutation responses have an unknown outcome, requiring inspection before another mutation. Mutation responses with HTTP 5xx, HTTP 408, redirects, or malformed JSON also retain an unknown outcome. A server may have committed the write before it failed to return a valid response.

Authority and replay

The server revalidates the active native run, assigned task and actor, then creates a server-held agent JWT bound to that company and run. Requests go through the actual HTTP router with its authorization, validation and domain audit behavior. Skill-test runs retain the same task-scoped skill_test JWT as legacy REST runs, including after later edits to the task mode. An additional runner.api_called receipt attributes mutations to the run even where older route audit events omit that field. The run and work mode are checked again after asynchronous file preparation, so a stopped run cannot dispatch an upload prepared under its earlier binding.

call_api is an authenticated REST transport, with the same endpoint and payload permissions as a legacy agent using REST. It does not maintain a second denylist for routines, runtime services, skill tests, recovery, invitations, secrets, exports, lifecycle fields or approval routes. Existing HTTP routes enforce their company/resource scope, ownership, grants, redaction, run requirements and board or approval gates. A board-only route still denies an agent call. Dedicated tools remain preferred for common workflows, including native completion and monitors.

Ask and pre-acceptance Plan retain their existing read restrictions and specific mutation exceptions (task titles and conversational confirmation recording). Protocol endpoints still require their existing clients. Active-run validation, server-owned credentials, file containment, transfer bounds and replay handling also remain in place. REST parity does not grant board identity or new permissions.

Mutation call IDs reserve a durable receipt in the run's existing resultJson before dispatch. Replays return the recorded result. Reusing an ID with different arguments is rejected. A crash after reservation leaves an unknown outcome and never automatically resends the mutation. The limit is 512 mutation receipts per run. No database migration is needed.

Workspace uploads use the existing workspace resource containment checks, no-symlink file opens covering every path component, and bounded descriptor reads. Local uploads require Linux or macOS; authorized artifacts work on other hosts. Artifacts must belong to the bound company and pass the same actor access checks as downloads, before and after reading their bytes. Private API response snapshots cannot be used as public company logos or bundled into company exports. An owner can explicitly publish a copy through the existing attachment upload path. Request bodies and uploads go through the route's validation and authorization; the fallback does not reject fields that an agent can supply through REST. Route-authorized responses normally use the bounded inline/artifact capture and replay mechanism. Credential-bearing responses (secret values, issued keys, invites, webhook secrets (including restored triggers) and gateway credentials) stay inline, with a 10 MiB response bound. They never spill into plaintext files or saved response assets. Their durable mutation receipts encrypt the response with the existing local secret provider. Replays decrypt it only inside the authorized run; no HTTP request repeats. A working secret store is checked before credential dispatch. Other API responses retain the existing 24 KiB inline and 1 GiB capture limits.

API request and response bodies are omitted from persisted native tool events, checkpoints and completion results. Saved events retain operation identity, HTTP status and a payload digest for replay conflict detection. The model still receives the original authorized HTTP response; this redaction affects durable history. Completion retries compare expected and persisted events through the same idempotent redaction projection. Repeated projection preserves the original payload digest. Provider recovery uses the same projection to compare saved completion results with provider history. Changed private bodies still conflict. Restart preparation preserves the run's admitted REST credential scope, even when the task mode changes. See the run-log guide for stored fields.

The server-issued REST credential for the bound run is never returned to the model. Streaming, WebSocket, MCP and authentication handshakes are documented as protocol operations requiring their existing clients.

Catalog maintenance

runner-api-catalog.ts builds from the server OpenAPI registry. Experimental pipeline, Cases and smoke-lab routes now share their validators with discovery. Seven Cases/pipeline route shapes are multiplexed by resource identity: the Cases router intentionally forwards unknown resources to the pipeline router. Their separate catalog entries explain which resource identifier is required. Registry authorization descriptions are documentation; actual route checks are authoritative.

Regenerate old-skill enrichment after editing its API reference:

node scripts/generate-runner-api-reference.mjs
node scripts/generate-runner-api-reference.mjs --check
node scripts/generate-runner-experimental-api-metadata.mjs
node scripts/generate-runner-experimental-api-metadata.mjs --check

Mounted-route coverage tests include experimental routes. Three WebSocket mounts are explicitly classified in the catalog. Shared protocol-action catalogs, provider projections and generated compatibility checks include both tools.

Verification and paid evals

The companion paperclip-evals worktree contains evals/runner-api-tools. Its README documents explicit case/model selectors, the cumulative budget ledger, fixture reset, progressive batches, and Evalbook generation. No command defaults to running the entire paid suite. Capability, forced operation contracts and paired common-operation regressions are reported separately.

Provider-free integration tests exercise real runnerd → PRP → authority → HTTP, route validation and audit, stale bindings, Ask/Plan restrictions, identity spoofing, file containment, uncertain mutation receipts and fixture isolation.

The Evalbook viewer uses the existing shared viewer and stylesheet on master. The report retains actual persisted-state summaries for private local inspection; public replay continues to withhold company-state details.

The ACPX sidecar includes the upstream terminal-usage accounting correction from origin/codex/evalbook-default-chat-sept6. Its qualified Claude executable requires Linux x64. The first macOS stage records a zero-cost ACPX admission failure. A later user-authorized OpenCode/OpenRouter Sonnet profile reached a real HTTP read, but the attempt failed on a missing harness completion contract and incomplete terminal accounting. The harness contract is corrected. The missing fourth request was subsequently recovered from the matching OpenRouter session and generation billing record; the original failed attempt remains immutable. New attempts retain an append-only, flushed event journal and bounded provider trace outside disposable runtime files. Provider-free startup succeeds for OpenRouter Sonnet and DeepSeek. See doc/plans/2026-09-07-runner-api-production-readiness.md for remaining release gates.