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Seeds operator hand-edits across every formerly-destructive surface (config.json unknown keys, .env comments/order/encoding, managed sandbox drift classifier, managed instructions drift gate) and asserts each edit survives a setup/sync rerun. Exercises the shared writer/reconciler mechanisms directly; DB-backed variants covered by the embedded-Postgres suites named in the file header. Co-Authored-By: Claude Opus 4.8 <noreply@anthropic.com>