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| Author | SHA1 | Message | Date | |
|---|---|---|---|---|
 DottaandClaude Opus 5.5
|
d5c1f48180 |
perf(native): index the backup lease lookup by scope digest (#20571)
## Thinking Path > - Paperclip is the open source app people use to manage AI agents for work > - Native harness backup expiration removes old session backups. Before it removes a backup, it finds the environment leases that reference the backup root > - This lookup reads leases by run ID, by the `metadata.nativeHarnessBackup.sessionScopeSha256` digest, or by the identity's own lease ID, in one `OR` query > - The metadata arm has no index. So PostgreSQL reads every lease of the company, and the metadata of each lease, for each lookup > - On a hosted test database, this statement ran 21,736 times at a mean of 158 ms in one window. After other fixes, it still ran 2,364 times at a mean of 121 ms > - This pull request adds a small partial expression index on the digest > - The benefit is that each lookup reads a few index entries instead of all company leases. The query text and the result do not change ## Linked Issues or Issue Description **What existing behavior does this improve?** The lease lookup in `backupDependencies` in `server/src/services/native-runtime/native-harness-backup-expiration.ts`. `reconcileBackup` calls it for each backup root when the expiration worker loads or checks a root. **Subsystem affected** Native harness backup expiration and the `environment_leases` table schema. **Current behavior** The query is `company_id = $1 and (heartbeat_run_id in (...) or metadata->'nativeHarnessBackup'->>'sessionScopeSha256' = $n or id = $m)`. The run arm and the ID arm have indexes. The digest arm has no index. A `BitmapOr` plan needs an index for every arm, so the planner reads all company leases and evaluates the JSON expression on each row. Lease metadata holds sandbox details, so these reads are large. **Proposed behavior** The partial index `environment_leases_native_backup_scope_idx` keys leases by the digest. It holds only leases that have a backup stamp. Every arm of the `OR` now has an index, and the planner combines three index probes. The SQL and the returned lease IDs do not change. **Reason and benefit** This statement was in the top ten by total database time on a loaded hosted database. A local reproduction shows a query that is more than 6,000x faster and reads 9 buffers instead of about 436,000. **Breaking changes** None. The API, the lease-matching rules and the results do not change. ## What Changed - Add the partial expression index `environment_leases_native_backup_scope_idx` on `(metadata->'nativeHarnessBackup'->>'sessionScopeSha256')`, where that value is not null. - Add migration `0459`. It uses `CREATE INDEX CONCURRENTLY IF NOT EXISTS`. The migration runner runs it as a top-level statement, the same as migrations 0454–0458. - Add a regression test. It checks the lease-matching rules: run leases, a lease with only the backup stamp, and the identity's own lease match. Another digest, a non-string stamp, a top-level key with the same name, and the same digest in another company do not match. The test also checks that the custom plan and a forced generic plan of the generated SQL use `BitmapOr` with the new index and no sequential scan. - Add `scripts/benchmark-environment-lease-backup-lookup.ts`. It captures the SQL that the real service generates and measures it with and without the index. - Document the index in `doc/DATABASE.md`. ## Verification Cause and thesis. The cost comes from the one `OR` arm without an index, which forces a scan of all company leases and their metadata. Thesis: an index on the digest lets the planner use a `BitmapOr` of three index probes, so the cost no longer depends on the company's lease count. The results stay identical. The benchmark confirms the thesis. I did not change the SQL. With the index, the existing `OR` query already gets the index plan. A `UNION` rewrite would not help without the index, because the digest arm would still scan the company. Local SQL benchmark: ```sh pnpm --filter @paperclipai/server exec tsx ../scripts/benchmark-environment-lease-backup-lookup.ts ``` Fixture (synthetic): one company with 100,000 leases with 4 KiB of incompressible metadata each. 30% of the leases have a backup stamp for another session. A second company has 20,000 leases. The table is 678 MB. The backup root has 3 run leases, 1 lease with only the stamp, and 1 identity lease. The same digest is also in the other company. Embedded PostgreSQL 18 on an Apple laptop, which other work loaded heavily. The hosted database is Neon with different compute, so absolute times are local SQL measurements only. The script measures in the order: no index, index, no index, index. Each measurement has 2 warmups and 11 samples of `EXPLAIN ANALYZE` execution time and of the full `reconcileBackup` call. | Measurement | Without index | With index | | --- | --- | --- | | Lease query execution, run 1 | median 196 ms (138–562 ms) | median 0.010 ms (0.007–0.017 ms) | | Lease query execution, run 2 | median 185 ms (144–295 ms) | median 0.030 ms (0.020–0.045 ms) | | `reconcileBackup` wall time (includes file reads), runs 1 and 2 | median 188 ms and 216 ms | median 1.4 ms and 4.2 ms | | Plan | `Gather > Seq Scan` | `Bitmap Heap Scan > BitmapOr` of `heartbeat_run_idx`, the new index and `pkey` | | Buffers | 365,880 hit + 70,050 read | 9 hit | These numbers are from head `65bd9d7ac6`. The final head only renumbers the migration to 0459 after rebases; the SQL, the index and the service code are the same. Two earlier runs on the same fixture, SQL and index gave 236–425 ms without the index and 0.023–0.033 ms with the index. The machine had heavy load from other work, so the spread without the index is wide. Output check: in all four measurements, the service returned the same 5 lease IDs, and the complete query rows were equal. Index build (`CREATE INDEX CONCURRENTLY` from the migration file): 0.8–2.4 s for the 678 MB table over all runs. Index size: 3.4 MB with 30% of leases stamped. Tests: - `cd server && npx vitest run src/__tests__/native-harness-backup-expiration.test.ts`: 109 passed. The new test failed when I dropped the index before the plan check (confirmed red), and it passes with the index. - `pnpm --filter @paperclipai/db check:migrations`: passed. - `pnpm --filter @paperclipai/db typecheck` and `pnpm --filter @paperclipai/server typecheck`: passed. - `pnpm verify`: it asks for broader coverage (exit 2) because of the new script. See the CI results for this head. ## Risks - Migration time. A concurrent index build reads the full `environment_leases` table and does not block writes. Locally, the build took 0.8–2.4 s for 678 MB. The time grows linearly with the table size. I did not time it on a production-size clone. I expect a few seconds to tens of seconds on a large instance, which is in the 1–2 minute budget. This estimate is not proven. - If the build stops, PostgreSQL can leave an invalid index. The migration runner repairs invalid concurrent indexes when it runs again, and `IF NOT EXISTS` makes a rerun safe. - The index expression must stay textually equal to the query expression. If someone changes the JSON path, the planner cannot use the index. The new test catches this for custom and generic plans. - The index is partial, so ANALYZE does not collect statistics for the expression. The planner uses the default equality estimate. On the large fixture and in the small test, the planner still selects the index plan. A company with very few leases can still get a sequential scan, which is cheap. - Each lease write with a backup stamp writes one more small index entry. The write cost is small. - This change does not reduce how often the worker calls the lookup. It makes each call cheap. The other digest lookups in backup retention (`native-harness-backup-retention.ts`) and session retention checks can also use the index. - Previous-release story: no persisted state changes. The index is derived from existing lease metadata. - The hosted improvement is not verified until deployment. After deployment, compare a new query-statistics window for this statement. ## Model Used - Claude Opus 5.5 (`claude-opus-5-5`), Anthropic, used through Claude Code with tool use (shell, file edits, local PostgreSQL benchmarks). ## Checklist - [x] I have included a thinking path that traces from project context to this change - [x] I have specified the model used (with version and capability details) - [x] I have checked ROADMAP.md and confirmed this PR does not duplicate planned core work - [x] I have searched GitHub for duplicate or related PRs and linked them above - [x] I have either (a) linked existing issues with `Fixes: #` / `Closes #` / `Refs #` OR (b) described the issue in-PR following the relevant issue template - [x] I have not referenced internal/instance-local Paperclip issues or links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip` URLs) - [x] My branch name describes the change (e.g. `docs/...`, `fix/...`) and contains no internal Paperclip ticket id or instance-derived details - [x] I have run tests locally and they pass - [x] I have added or updated tests where applicable - [x] I have updated relevant documentation to reflect my changes - [x] I have considered and documented any risks above - [ ] All Paperclip CI gates are green - [ ] Greptile is 5/5 with no open P2s, recommendations, or follow-ups - [x] I will address all Greptile and reviewer comments before requesting merge 🤖 Generated with [Claude Code](https://claude.com/claude-code) Co-authored-by: Claude Opus 5.5 <noreply@anthropic.com> |
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|
DottaandClaude
|
7368a0b15c |
fix(recovery): re-queue native runs that fail on a transient database fault before provider work (#20561)
## Thinking Path
> - Paperclip is the open source app people use to manage AI agents for
work.
> - Native (Paperclip Runner) runs prepare a task, pass a final dispatch
gate, and only then start a provider.
> - A native run can fail before any provider work starts. Examples are
a Postgres serialization or deadlock error (`40001`, `40P01`) at budget
admission, or a transient database error during setup.
> - Today such a run ends `adapter_failed` or `setup_failed`. `failRun`
writes the "no provider work" record only for legacy runs, and the
bounded retry paths do not retry these codes for native runs. The
release then opens the native hold
(`native_continuation_requires_reconciliation`), and a person must click
Retry.
> - The goal is that 0% of tasks need a Retry click after a restart or a
storage/DB fault. Duplicate provider work is worse than a Retry click,
so the fix must only act when the server can prove no provider work
started.
> - This pull request records that proof for native runs and sends a
transient database failure to the existing uncharged, bounded
`interrupted_preparation` retry lane.
> - The benefit is that these runs re-queue by themselves, and runs with
any sign of provider work keep today's hold.
## Linked Issues or Issue Description
**What happened?**
In restart-chaos waves with database pressure, a native run failed at
budget admission with exhausted serialization retries (`40001`/`40P01`).
The run event history had no `native.process_start_requested` event.
About 15 s later the server recorded "Automatic recovery stopped" with
cause `native_continuation_requires_reconciliation`. The task stayed
blocked until a person clicked Retry.
**Expected behavior**
A native run that failed before any provider work, on a fault that
clears by itself, re-queues automatically. The attempt is bounded and
does not spend the failure budget. A persistent failure still ends
failed, with a working Retry.
**Steps to reproduce**
1. Start a native (Paperclip Runner) task.
2. Make budget admission or a setup database write fail with SQLSTATE
`40001` or `40P01` until its bounded retries are exhausted.
3. See the run end `adapter_failed`/`setup_failed`, the task go to
`blocked`, and a `native_continuation_requires_reconciliation` recovery
action that waits for Retry.
**Paperclip version or commit**
`master` at
|
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|
DottaandClaude Opus 5.5
|
6ed6b0754b |
perf(recovery): probe recovery source runs and stale-continuation runs by key (#20584)
## Thinking Path > - Paperclip is the open source app people use to manage AI agents for work > - The workspace recovery worker saves the files of failed runs. After each pass, it reads the time of its next deadline (`nextWorkspaceRecoveryAt`) > - That read finds the source run, its finalizer and its leases with `id::text = evidence->>'runId'`. A text comparison cannot use a key. Each exhausted hold read every run, finalizer and lease of its company > - On a hosted staging database this statement used about 4 s per call (21 calls in the sample window). The cost grows with exhausted holds multiplied by the company's run count > - The ownership reconciler's stale-continuation check (`checkStaleDroppedComments`) has the run lookup shape that #20412 fixed in the lost-wake check: one OR across the legacy context and the native column > - This pull request compares the run id as a canonical uuid, and it gives the stale-continuation check the per-binding run probes from #20412 > - The benefit is the same recovery decisions with index-driven work: 11 s to 93 ms for the deadline read on a representative local fixture ## Linked Issues or Issue Description Refs #20412 **What happened?** The workspace recovery deadline read was one of the most expensive statements that remained on a hosted staging database after the fixes in #20393, #20405, #20386, #20412, #20391 and #20400. Query statistics showed about 4 s per call. The statement text starts with `select case when (issue_recovery_actions.…`. The statement evaluates the retained-source fallback and stop-proof conditions for each recovery action. These conditions read the source run (`heartbeat_runs`), its finalizer (`native_run_finalizations`) and its leases (`environment_leases`) with `x.id::text = evidence->>'runId'`. The cast prevents the use of the primary key. PostgreSQL reads all rows of the company for each exhausted hold. The worker's discovery (`retainedWorkspaceCandidates`) uses the same conditions. The stale-continuation check matched a task's runs with `(context_snapshot->>'issueId' = issue OR native_issue_id = issue)`. With the OR, PostgreSQL can join runs only by company. It also hashed every wake request of the company for the stale-wake test. **Expected behavior** Each condition uses a key lookup. The worker and the reconciler make the same decisions for the same saved state. **Steps to reproduce** 1. Seed a company with a deep run history and a few thousand workspace recovery actions. Let a few hundred be exhausted holds that stay active. 2. Call `nextWorkspaceRecoveryAt`. 3. The call takes seconds, and its time grows with holds multiplied by runs. The benchmark below shows this. **Paperclip version or commit** Baseline: `8d2bf78323`. **Deployment mode** Server with PostgreSQL. The local proof uses disposable PostgreSQL 18.1. Staging uses hosted PostgreSQL. ## What Changed - `workspace-recovery-fallback-discovery.ts`: the source run, finalizer and lease probes compare `id = canonicalExecutionUuid(evidence->>'runId')`. The helper returns null unless the text is the canonical lowercase uuid form. Thus the probe matches exactly the rows that `id::text = evidence->>'runId'` matched. The helper already exists in `execution-identity.ts`. - `nextWorkspaceRecoveryAt` and worker discovery use these conditions. Their SQL changes only in these probes. - `checkStaleDroppedComments` reads in two stages. The first stage keeps comments that a stale-continuation cancellation dropped and that no open wake carries. The second stage applies the run probes. The run probes use the `taskRuns` helper from #20412, which is now shared by both checks. The stale-wake lookup ends with `offset 0`, so it stays a per-comment index probe. - The final `order by c.created_at limit N`, the projection and the delivery check after the query do not change. - Add `scripts/benchmark-recovery-status-checks.ts`. It loads the changed files from an explicit baseline commit and from the working tree. Before it records time, it compares every changed condition for every recovery action, the complete service results and the positional SQL rows. - Add tests: each run binding in the stale-continuation check (native, legacy, live run on either binding, wrong agent, wrong company, failed run, run outside the comment time, closed by a person, open wake). Also a test that a hold with a non-canonical saved run id is not discovered, as before. - Document both checks and the benchmark in `doc/DATABASE.md`. - No schema change, index, migration, or new startup work. ## Verification - `pnpm exec vitest run src/__tests__/ownership-reconciliation-report.test.ts src/services/workspace-recovery-fallback.test.ts src/services/workspace-recovery-stop-proof.test.ts src/__tests__/heartbeat-held-comment-wake.test.ts --maxWorkers=1` (from `server/`). - `pnpm --filter @paperclipai/server typecheck`. - `pnpm --filter @paperclipai/server exec tsx ../scripts/benchmark-recovery-status-checks.ts --baseline-ref=8d2bf78323 --samples=7` Benchmark setup: PostgreSQL 18.1 (embedded, local), `shared_buffers` 128 MB, `work_mem` 4 MB. All data is synthetic, with md5-hex filler. Each fixture has two companies (full size and a quarter). Two warmup rounds, then 7 timed samples for each arm, in alternating order. Each sample runs the real service function and asserts the same result. These are local SQL measurements on a shared machine, so the spread is wide. Workspace recovery deadline (`nextWorkspaceRecoveryAt`). About 8% of actions are exhausted holds that stay active. Some actions save a non-canonical (uppercase) run id. Before timing, the benchmark compares six conditions (fallback pending, due time, due; re-arm pending, due time, due) for every action of the fixture. | Fixture | Runs / actions / pending holds | Baseline median (min–max) | Treatment median (min–max) | Shared buffers | | --- | --- | --- | --- | --- | | small | 6,500 / 255 / 36 | 50.9 ms (47–76) | 6.8 ms (6–8) | 19,133 → 1,075 | | representative | 78,750 / 3,813 / 588 | 11,098 ms (8,277–12,790) | 93 ms (35–145) | 3,493,417 → 24,902 | | deep history | 191,250 / 3,813 / 588 | 40,146 ms (31,190–52,521) | 40 ms (36–230) | 13,491,792 → 26,911 | Stale-continuation check (`checkStaleDroppedComments`). The fixture is pessimistic: more than half of recent comments on done tasks have a stale cancelled wake. The table shows statement time from `EXPLAIN ANALYZE` with default settings, and one statement run with `enable_nestloop = off` (the company-only hash plan). The result is checked as equal in both modes. | Fixture | Runs / recent comments / reported | Statement, baseline → treatment | Hash plan, baseline → treatment | | --- | --- | --- | --- | | small | 3,792 / 76 / 24 | 3.2 → 1.5 ms | 5.5 → 3.8 ms | | representative | 75,406 / 1,125 / 200 (limit) | 34 → 26 ms | 66 → 25 ms | | busy hour | 152,031 / 5,625 / 200 (limit) | 328 → 153 ms | 2,302 → 165 ms | - Neutral path: the complete stale-continuation service call stays about the same (busy hour 750 → 655 ms median). The per-comment delivery check after the query (`deliveredQueuedCommentIds`) is most of that time. This change does not touch it. ## Risks - Low risk. Every predicate keeps the same logic. Only the probe shape and the evaluation order change. The benchmark compares each changed condition for every recovery action, including non-canonical saved run ids, and the complete results of both checks. - Previous-release story: no saved state, schema or identity changes. Holds saved by older releases are read with the same rules, so they carry forward unchanged. - Rows with the same comment `created_at` have no defined order, as before. ## Model Used - Claude Opus 5.5 (`claude-opus-5-5`), Anthropic, used through Claude Code with tool use (shell, file edits, local PostgreSQL). ## Checklist - [x] I have included a thinking path that traces from project context to this change - [x] I have specified the model used (with version and capability details) - [x] I have checked ROADMAP.md and confirmed this PR does not duplicate planned core work - [x] I have searched GitHub for duplicate or related PRs and linked them above - [x] I have either (a) linked existing issues with `Fixes: #` / `Closes #` / `Refs #` OR (b) described the issue in-PR following the relevant issue template - [x] I have not referenced internal/instance-local Paperclip issues or links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip` URLs) - [x] My branch name describes the change (e.g. `docs/...`, `fix/...`) and contains no internal Paperclip ticket id or instance-derived details - [x] I have run tests locally and they pass - [x] I have added or updated tests where applicable - [x] I have updated relevant documentation to reflect my changes - [x] I have considered and documented any risks above - [ ] All Paperclip CI gates are green - [ ] Greptile is 5/5 with no open P2s, recommendations, or follow-ups - [x] I will address all Greptile and reviewer comments before requesting merge 🤖 Generated with [Claude Code](https://claude.com/claude-code) Co-authored-by: Claude Opus 5.5 <noreply@anthropic.com> |
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DottaandClaude Opus 5.5
|
be0d100a8b |
fix(native): settle cleanup-gate refusals after a completed turn without a dead-end Retry (#20572)
## Thinking Path
> - Paperclip is the open source app people use to manage AI agents for
work
> - Native runs execute a provider turn, then close the provider session
and prove it stopped
> - When close cannot prove that the old runner, provider and tools
stopped, the runner holds a cleanup gate
(`native_session_cleanup_quarantined`) that refuses the next session on
that task
> - A run finished its provider turn and saved its work. A server
restart had left one tool callback without a saved result, so close
could not prove the drain, and the gate refused the run's own same-run
recovery 30 seconds later
> - The task then showed "Couldn't finish this attempt" with a Retry
button, but the retry route refuses this error code with 409. The saved
error text told an operator to act
> - This pull request makes the task projection, the execution blocker,
the executor and the retry route agree, and replaces the operator text
with plain wording
> - The benefit is that finished work no longer looks like a failed
attempt, and the UI never offers a Retry that the server refuses
## Linked Issues or Issue Description
**What happened?**
A remote native run completed its provider turn and saved its comments
and documents. A server restart during the turn left one semantic tool
callback without a saved result. Session close then reported
`native_session_settlement_incomplete` (runner suspended, provider drain
unproven), and the runner kept an operator-required cleanup gate. The
same-run disposition recovery was refused at admission, and the run
ended `failed` with `native_session_cleanup_quarantined`.
**Expected behavior**
The task should show its real state (here, waiting on a child task). It
should not show a failure banner or a Retry that the server refuses. No
text should ask an administrator to act.
**Steps to reproduce**
1. Start a remote native run and restart the server while a tool
callback runs.
2. Let the resumed turn complete without a semantic result, so a
same-run recovery is scheduled.
3. Observe the refusal at admission, the "Couldn't finish this attempt"
banner, and a Retry that returns 409.
**Paperclip version or commit**
master at
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DottaandClaude
|
84007892e9 |
refactor: move AGENTS.md section detail to docs and rules, add a bug-fixing section (#20585)
## Thinking Path > - Paperclip is the open source app people use to manage AI agents for work > - `AGENTS.md` is the instruction file that each human and AI contributor reads before a change > - Pull request #20557 shortened the file, but several sections still held detail that applies to only some changes > - The scoped-rules section told agents to read each matching rule in full, and most changes match five rules > - The core engineering rules mixed three product invariants with process conventions > - This pull request moves that detail to the docs and to scoped rules, and adds a section on how to fix a bug > - The benefit is a 211-line file that states what applies to every change and points to the rest ## Linked Issues or Issue Description Refs #20557 **Issue type** Outdated or unclear contributor documentation. **Where is the issue?** `AGENTS.md` at the repository root, and `rules/`. **What's wrong?** - The scoped-rules section made agents read the full body of each matching rule before a change. The rule bodies total about 47 KB. - Sections 4, 6, 8, 9 and 10 repeated detail that belongs in `doc/DEVELOPING.md`, `doc/DATABASE.md`, a route rule, `DESIGN.md` and `CONTRIBUTING.md`. - Section 4 had a database reset command for `data/pglite`. That directory does not exist. - Section 5 had seven rules. Four of them were process conventions or path-specific detail. - The file did not say how to fix a bug. **Suggested fix** Make the rule headers the index. Move section detail to the document or rule that owns it. Keep only the three invariants in section 5. Add a bug-fixing section. ## What Changed - The scoped-rules section now tells agents to list the rule headers with one `grep` command. Agents read a rule body only for a design decision in its area, when the description is not sufficient, or when a reviewer cites it. - `rules/README.md` says that each `description` must state the required behavior in one sentence. - `rules/pull-request-review.mdc` has a description that states its requirements. - Section 4 (dev setup) and section 11 (pull requests) now point to `doc/DEVELOPING.md` and `CONTRIBUTING.md`. - The schema change workflow moved from section 6 to `doc/DATABASE.md`. - The API and auth expectations moved from section 8 to the new `rules/api-route-expectations.mdc`. - Section 9 links to `DESIGN.md` for design rules. `AGENTS.md` no longer tells contributors to run `pnpm check:token-gates`. - Added section 10, "Fixing a Bug": reproduce the error, write a failing test, write the fix, see the test pass, and verify the fix. - Section 5 now has three rules: company scope, contract synchronization, and the control-plane invariants. - The company-scope exceptions moved to the new `rules/company-scope-exceptions.mdc`. - Removed the strategic-docs rule. The plan-doc convention moved to the repo map. The artifact rule moved to section 7. - Removed rule 7. Five code comments that cited `AGENTS.md §5.7` now cite `rules/data-paths.mdc`. - Regenerated the SDK public source pin, because one of those comments is in `packages/shared/src/crash-points.ts`. - Added both new rules to `.greptile/files.json`. - The API route rule applies only to routes that read or write company data. Its status code list is a list of common codes. - The company-scope rule lists the sidebar company order as an instance-wide exception. - The `honeycomb-tracing` skill now points to `rules/data-paths.mdc` for the Telemetry workflow. ## Verification - Open `AGENTS.md` and confirm that each link resolves. A local script checked this. - Run `grep -E '^(description|globs|alwaysApply):' rules/*.mdc` and confirm that each rule prints a description. - Run `node tests/runner-e2e/source-sdk-public-inputs.mjs <HEAD> --check`. It passes locally. - `packages/shared/src/crash-points.test.ts` passed locally before the rebase onto `master`. - Five source files changed in comments only. No other test suite ran locally. ## Risks - An agent that reads only rule descriptions can miss a detail in a rule body. Reviewers still apply the full rules. - Pull requests and the definition of done are now sections 11 and 12. Sections 1 to 9 keep their numbers. - Dated plan documents under `doc/plans/` still cite `AGENTS.md §5.7`. They are historical records. - Pull request #20565 also changes `AGENTS.md`. The second one to merge needs a conflict fix in section 1 and section 2. ## Model Used - Claude (Anthropic), in Claude Code with tool use. - `claude-fable-5-2`. ## Checklist - [x] I have included a thinking path that traces from project context to this change - [x] I have specified the model used (with version and capability details) - [x] I have checked ROADMAP.md and confirmed this PR does not duplicate planned core work - [x] I have searched GitHub for duplicate or related PRs and linked them above - [x] I have either (a) linked existing issues with `Fixes: #` / `Closes #` / `Refs #` OR (b) described the issue in-PR following the relevant issue template - [x] I have not referenced internal/instance-local Paperclip issues or links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip` URLs) - [x] My branch name describes the change (e.g. `docs/...`, `fix/...`) and contains no internal Paperclip ticket id or instance-derived details - [ ] I have run tests locally and they pass - [x] I have added or updated tests where applicable - [x] I have updated relevant documentation to reflect my changes - [x] I have considered and documented any risks above - [ ] All Paperclip CI gates are green - [ ] Greptile is 5/5 with no open P2s, recommendations, or follow-ups - [x] I will address all Greptile and reviewer comments before requesting merge 🤖 Generated with [Claude Code](https://claude.com/claude-code) --------- Co-authored-by: Claude <noreply@anthropic.com> |
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DottaandClaude Opus 5.5
|
d0c30e69a9 |
fix(storage): abort a snapshot upload a restart cut off once its save attempt is superseded (#20542)
## Thinking Path
> - Paperclip is the open source app people use to manage AI agents for
work
> - Remote workspaces save their files as encrypted snapshots in object
storage. Snapshots over 16 MiB use S3 multipart uploads.
> - A server restart can cut off a snapshot upload in the middle of an
`UploadPart` request.
> - The server aborts a multipart upload only in-process, on an error or
an abort signal. A SIGKILL can never do that. On SIGTERM, the drain step
timed out while the store held the part, and the process exited without
`AbortMultipartUpload`.
> - The incomplete upload then stays in the bucket. Nothing records its
upload id and nothing finds it again, so incomplete uploads pile up and
the operator pays for their parts.
> - This pull request aborts the incomplete uploads of each save attempt
when that attempt can no longer win, with no polling and no schema
change.
> - The benefit is that no incomplete upload outlives its save attempt.
## Linked Issues or Issue Description
**What happened?**
A restart-chaos wave (Daytona, R1 workload, storage fault ST4,
`--storage-trigger snapshot-part`, faults K1 and K2, master
`fea4530a30`) passed all 3 tasks. All 3 committed snapshots read back
intact. But the storage audit found 3 incomplete multipart uploads. Each
one was the exact upload that a restart cut off in the middle of
`UploadPart`. The retried save then published a different attempt of the
same snapshot.
**Expected behavior**
When a save attempt can no longer become the snapshot's object, its
incomplete multipart uploads are aborted. The storage audit shows 0
incomplete uploads after the wave.
**Steps to reproduce**
1. Run a snapshot save larger than 16 MiB against S3.
2. Kill the server (SIGKILL), or send SIGTERM while the store holds an
`UploadPart` request.
3. Let the save retry and publish.
4. List the bucket's multipart uploads. The cut-off attempt's upload is
still there.
**Paperclip version or commit**
master `fea4530a30` and later.
**Relevant logs or output**
`shutdown step timed out; continuing shutdown without it
{"step":"delivery_work_stop","durationMs":20001}`, then `Paperclip did
not stop within 30000ms; sending SIGKILL`.
## What Changed
- The S3 storage provider and the storage service get
`abortIncompleteUploads(objectKey)`. It lists the multipart uploads
under that exact key (`ListMultipartUploads` with the key as the
prefix), skips other keys that only share the prefix, and aborts each
one. `NoSuchUpload` counts as already done. The local-disk provider has
no multipart uploads and does nothing.
- Save publication: the save journals every attempt's object key in
`metadata.uploads` before any remote I/O. When one attempt moves the
snapshot from `pending` to `uploaded`, no other attempt can win any
more. The winning process now aborts the incomplete uploads of every
other journaled attempt key. Each abort is best effort and bounded to 5
s. A snapshot with one attempt sends no extra request.
- A losing uploader that is still live: if its upload fails after
another attempt has published the snapshot, it now returns the published
snapshot (after it verifies it) instead of the error. So an abort from
the winner never fails a save that is still running in another process.
- Snapshot retention: before it deletes a retired snapshot's objects
(this includes saves that #20502 retires as abandoned), retention aborts
the incomplete uploads of each attempt key. A store that refuses the
listing (for example a missing `s3:ListBucketMultipartUploads`
permission) logs a warning and does not block the deletion.
- Abandoned saves: when the ownership reconciler retires an abandoned
save (`remote_snapshot_save` and `remote_snapshot_ledger` settlement,
from #20502), it now aborts the incomplete uploads of every journaled
attempt key after its transaction commits. The owner run is terminal and
the save work is settled, so no live uploader can own those uploads.
This is the durable path for SIGKILL: the reconciler pass after boot
settles the dead save and cleans its uploads.
- SIGTERM drain: the multipart upload code keeps an in-process set of
running uploads. Shutdown aborts them right away when
`delivery_work_stop` times out. It also aborts them after the heartbeat
run drain, before the finalizer and workspace-recovery waits, after a 5
s grace for them to finish. It waits at most 10 s for the
`AbortMultipartUpload` calls. Shutdown does nothing extra when no upload
runs.
- No polling and no periodic sweep. All triggers are events that already
exist: publication, abandonment settlement, retention of a retired
snapshot, and shutdown.
Previous-release story (`rules/upgrade-safe-run-state.mdc`): this adds
no persisted state and changes no saved shape. A snapshot that the
previous release saved with cut-off attempts in `metadata.uploads`
carries forward. Its incomplete uploads are aborted when the new release
publishes a retry of that snapshot, or when retention retires the
snapshot.
## Verification
- Red before, green after (all fail on master, pass with this change):
- `server/src/services/remote-workspace-snapshot-storage.test.ts`:
"aborts the incomplete upload of an attempt a restart cut off once a
retried save publishes" and "adopts the published save when another
uploader aborts this attempt's upload".
- `server/src/services/remote-workspace-snapshot-retention.test.ts`:
"aborts each attempt's incomplete multipart upload before deleting a
retired snapshot's objects". A second test proves that a refused listing
does not block retention.
- `server/src/__tests__/storage-s3-multipart-shutdown.test.ts`: file and
streamed uploads whose part the store holds are aborted at shutdown, and
the provider aborts only the exact key across listing pages.
- `server/src/__tests__/remote-snapshot-ledger-settlement.test.ts`:
"aborts the incomplete multipart uploads of every attempt when the
reconciler retires an abandoned save" (both settlement kinds; a key
outside the snapshot's prefix is skipped).
- `tests/restart-chaos/storage-orphan-uploads.test.ts` (MinIO): the real
provider aborts both cut-off uploads of one attempt key, and keeps a
sibling attempt and a longer key that shares the prefix.
- `cd server && npx vitest run src/__tests__/storage-s3 src/storage
src/__tests__/remote-snapshot-ledger-settlement.test.ts
src/services/remote-workspace-snapshot
src/services/remote-workspace-transport.test.ts
src/__tests__/remote-workspace-file-resources.test.ts`: 19 files, 517
tests pass; with `src/services/recovery`, `src/__tests__/ownership*` and
`heartbeat-workspace-busy.test.ts`, 32 files and 580 tests pass.
- `cd server && npx tsc --noEmit` and `node
scripts/typecheck-test-projects.mjs tests/restart-chaos` pass.
- Live proof, Daytona R1, ST4, `--storage-trigger snapshot-part`, K1/K2,
seed 1033, the evidence wave's flags, image
`paperclip-daytona-runner@sha256:05a4a092…` (controllerMatch: match):
- Before (master `fea4530a30`): `w-20261110T130541-s1033`: 3/3 pass, **3
incomplete multipart uploads**.
- `w-20261110T134623-s1033` on an earlier revision of this PR (publish +
retention hooks only): 2 incomplete uploads remained. Those saves were
abandoned, not retried, so neither hook ran. This led to the settlement
hook.
- After (head `8bc8fc66d0`): `w-20261110T141144-s1033`: 3/3 tasks pass,
exit 0, every fired restart proved it cut the held `UploadPart`, the
reconciler settled 3 abandoned saves, shutdown logged one in-flight
abort, and the storage audit shows **0 incomplete multipart uploads**
and 3 committed snapshots that read back intact.
## Risks
- A live uploader in another process can lose its incomplete upload when
a different attempt publishes first. That uploader now adopts the
published snapshot, so its save still succeeds.
- Narrow gap: an uploader that recorded its attempt but had not yet sent
`CreateMultipartUpload` when the winner published, and that then crashes
during its upload, leaves an incomplete upload until retention retires
the snapshot. An S3 lifecycle rule for incomplete uploads stays a good
backstop.
- Stores without `ListMultipartUploads` permission log a warning and
keep the previous behavior.
- Shutdown can take up to 10 s longer, and only when an upload is still
running after the drain.
## Model Used
Claude Opus 5.5 (`claude-opus-5-5`), Anthropic, with tool use and code
execution in Claude Code.
## Checklist
- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have searched GitHub for duplicate or related PRs and linked
them above
- [x] I have either (a) linked existing issues with `Fixes: #` / `Closes
#` / `Refs #` OR (b) described the issue in-PR following the relevant
issue template
- [x] I have not referenced internal/instance-local Paperclip issues or
links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip`
URLs)
- [x] My branch name describes the change (e.g. `docs/...`, `fix/...`)
and contains no internal Paperclip ticket id or instance-derived details
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [x] All Paperclip CI gates are green
- [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups
- [x] I will address all Greptile and reviewer comments before
requesting merge
🤖 Generated with [Claude Code](https://claude.com/claude-code)
---------
Co-authored-by: Claude Opus 5.5 <noreply@anthropic.com>
|
||
|
Nicky LeachandPaperclip
|
2e3cbe57a4 |
fix(native): preserve parked Runners across controller restarts (#20586)
## Thinking Path > - Paperclip is the open source app people use to manage AI agents for work. > - Native execution parks a released sandbox Runner for a later turn. > - The warm idle timer detaches Core and leaves Runner retention to the host. > - Controller shutdown instead stops recently parked Runners through checkpoint cleanup. > - This makes reuse depend on whether the idle timer fired before shutdown. > - This pull request uses the same detach operation for idle expiry and shutdown. > - The benefit is consistent Runner retention without a new retention or recovery mechanism. ## Linked Issues or Issue Description Fixes: #20012. Related: #20005 unified cached and adopted process reuse. Closed #19975 included this shutdown change within a broader retention proposal. ## What Changed - Detach confirmed released entries during controller shutdown. Keep busy, unreleased, and close-marked entries on the existing cleanup path. - Share the detach operation with idle expiry and cached-owner handoff. - Record that a local handle has started detaching. Later cleanup cannot fall back to stopping its Runner after a partial detach failure. - Preserve explicit environment deletion, release proof, admission, and process-reuse checks. - Add Codex and Claude restart, detach-failure, and environment-deletion regressions. Add real Runner adoption cases after the restart sweep, including managed GitHub rebinding. - Document the lifetime rule and make the shutdown warning cover both detach and checkpoint failures. ## Verification - Final source revision: `e4bb6ecbd7`. Local environment: macOS arm64, Node 26.12.0. - New controller-restart and detach-failure tests fail against unchanged master: 4 expected failures. Old shutdown calls close or reports success instead of reporting detach failure. - Focused executor tests: 22 passed. - Full native session executor suite: 1,328 passed. - `cd server && node scripts/typecheck-layers.mjs`: passed all source and test layers. - `node scripts/check-module-boundaries.mjs` and `git diff --check`: passed. - Manual diff review and added-line credential/PII scan: passed. - `cd server && node ../node_modules/vitest/vitest.mjs run src/services/native-runtime/plugin-runner-release-resume.integration.test.ts --bail=1 --reporter=verbose`: 14 passed on this revision. This includes new Codex and Claude restart cases and managed GitHub rebinding. - Failure history: an earlier concurrent run had 4 passes and 10 failures. Its first failure was the existing Claude cached case exceeding 60 seconds. Later cases encountered a leftover prototype spy, recursive calls, and startup timeouts. No source changed before the passing full rerun. A clean worktree of unchanged master (`e01fe7f84a`) passed all 11 original cases. The first timeout's exact cause remains unknown; the later pass does not establish that cause. - Standard Greptile review: 5/5 on `e4bb6ecbd7bd965b5f56507d2c42c580e8a1d547`, with no actionable findings. - `node scripts/local-verify.mjs --explain` returned exit 2 because the execution-semantics document requires broad CI. Required CI will supply broad typecheck, test, and build coverage. - A hosted deployment and an actual controller process replacement have not been run. The added integration cases exercise the shutdown sweep and a new adopting transport against a real Runner. ## Risks - SIGINT and SIGTERM preserve confirmed parked Runners, including ordinary service stops. The host still owns eviction and retention. - Detach failure retains a fenced local owner and reports failure. Core does not infer permission to stop the Runner from that failure. - Reuse remains conditional on current admission, process configuration, and host availability. - No persisted schema, checkpoint format, launch identity, or migration changes. State from the previous release uses the existing adoption or verified restore paths. ## Model Used - OpenAI Codex, GPT-6, with reasoning, repository inspection, tool use, and local test execution. The exact deployment identifier and context-window size are not exposed in this session. ## Checklist - [x] I have included a thinking path that traces from project context to this change - [x] I have specified the model used (with version and capability details) - [x] I have checked ROADMAP.md and confirmed this PR does not duplicate planned core work - [x] I have searched GitHub for duplicate or related PRs and linked them above - [x] I have either (a) linked existing issues with `Fixes: #` / `Closes #` / `Refs #` OR (b) described the issue in-PR following the relevant issue template - [x] I have not referenced internal/instance-local Paperclip issues or links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip` URLs) - [x] My branch name describes the change and contains no internal Paperclip ticket id or instance-derived details - [x] I have run tests locally and they pass - [x] I have added or updated tests where applicable - [x] I have updated relevant documentation to reflect my changes - [x] I have considered and documented any risks above - [x] All Paperclip CI gates are green - [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups - [x] I will address all Greptile and reviewer comments before requesting merge Co-authored-by: Paperclip <noreply@paperclip.ing> |
||
|
DottaandClaude Opus 5.5
|
765ccd8691 |
perf(chat): index chat-admission checks by company and payload issue id (#20562)
## Thinking Path
> - Paperclip is the open source app people use to manage AI agents for
work.
> - Chat connections save each external message as a `chat_actions` row
before the server admits it as an agent wakeup.
> - The server checks if an issue holds chat input that it did not
admit. Recovery skips such an issue. Manual task start refuses it.
> - On a hosted instance, the recovery read with this check used the
most total database time: 488 calls at about 1 s each. The manual-start
check ran 155 times at about 0.9 s.
> - The check matches `chat_actions.payload->>'issueId'` against the
issue. No index covers this value, so each call reads the full
`chat_actions` table and its payloads.
> - This pull request adds one concurrent partial index for the check.
The check SQL does not change.
> - The benefit is less background database load, so request reads wait
less. The results stay the same.
## Linked Issues or Issue Description
**What existing behavior does this improve?**
The chat-admission check `unadmittedChatWakeupCondition`. Recovery uses
it in the per-issue candidate read. Manual task start uses it in the
held-input check.
**Subsystem affected**
Server chat admission, issue recovery, manual task start, and the
database schema.
**Current behavior**
The check finds `inbound_wakeup` actions by `company_id` and
`payload->>'issueId'`. Two nested checks find `failed_run_retry` actions
and later `inbound_wakeup` actions on the same company and payload issue
ID. `chat_actions` has no index on `company_id` or on the payload issue
ID. Each call reads the full table and reads each payload. On a hosted
instance, the two statements used about 630 s of database time in one
statistics window.
**Proposed behavior**
The check and its nested checks read a small set of rows from one index.
The admission result does not change.
**Reason and benefit**
The hosted database had many concurrent active queries. Request reads
waited behind background work such as this check.
**Breaking changes**
None. The migration adds an index only.
## What Changed
- Migration `0458_chat_admission_issue_index` builds
`chat_actions_company_issue_kind_idx` with `CREATE INDEX CONCURRENTLY IF
NOT EXISTS`. It runs through the existing top-level statement path,
which repairs an invalid index on retry.
- Keys: `(company_id, payload->>'issueId', kind, status)`.
- Partial: `kind IN ('inbound_wakeup', 'failed_run_retry')`.
- One index serves the outer input lookup, the failed-run retry lookup,
and the later-input lookup. All three match on the same company and
payload issue ID.
- The Drizzle schema declares the index. The snapshot chain moves to
`0458` and keeps five snapshots.
- New regression test
`server/src/__tests__/chat-admission-condition.test.ts` pins the
admission semantics on real PostgreSQL:
- Pending and failed input without a receipt holds the issue. Received,
processed and cancelled input does not. Other action kinds do not.
- A skipped receipt, a receipt for another agent, or a receipt in
another company does not admit input. A failed or cancelled run still
counts as admission.
- The issue ID is compared as company-scoped text. Uppercase, array,
null, other-issue and other-company values do not match.
- Only an admitted retry in the same conversation and issue that lists
the action releases skipped input.
- Only later admitted input in the same conversation, issue and session
generation releases a failed input. Pending input stays held.
- The check reads `chat_actions` only through the new index.
- `scripts/benchmark-chat-admission-index.ts` measures both caller
statements with and without the index and fails if the rows differ.
- `scripts/benchmark-chat-admission-index-migration.ts` times the
migration through the normal migration runner.
- `doc/DATABASE.md` documents the index and the benchmark commands.
## Verification
Local SQL measurements on synthetic data. PostgreSQL 18.1 (embedded),
default settings. The fixture has 100,995 `chat_actions` rows (662 MB):
60,000 GitHub actions with 6 KiB incompressible payloads, 2,000 issues
with 20 admitted inbound messages each (3 KiB payloads), and 1,000
failed-run retries. Each case has 2 warmups and 9 samples of `EXPLAIN
ANALYZE` execution time. Runs alternate: no index, index, no index,
index.
| Caller statement | Case | No index, median (range) | Index, median
(range) |
| --- | --- | --- | --- |
| Manual-start held check | quiet issue | 3,093 ms (2,150–3,519) / 3,586
ms (2,375–11,235) | 0.036 ms (0.034–0.052) / 0.040 ms (0.033–0.047) |
| Manual-start held check | admitted input | 3,555 ms (3,310–8,080) /
5,205 ms (3,353–9,525) | 0.049 ms / 0.052 ms |
| Manual-start held check | unadmitted input | 3,002 ms (2,864–3,221) /
4,179 ms (3,200–6,585) | 0.051 ms / 0.044 ms |
| Manual-start held check | failed, later admitted | 3,586 ms / 3,722 ms
| 0.066 ms / 0.054 ms |
| Manual-start held check | admitted retry | 2,733 ms / 4,953 ms | 0.049
ms / 0.053 ms |
| Recovery candidate read | quiet issue | 43 ms (41–48) / 96 ms (44–219)
| 0.047 ms / 0.055 ms |
| Recovery candidate read | admitted input | 203 ms (48–575) / 174 ms
(44–314) | 0.055 ms / 0.058 ms |
| Recovery candidate read | unadmitted input | 66 ms / 144 ms | 0.053 ms
/ 0.054 ms |
- Buffers per call fall from about 40,000 shared hits to 5–23.
- Locally, the recovery read without the index uses a hashed full scan
of `chat_actions`. The held check uses a full scan per call. On the
hosted instance both took about 1 s per call. The local fixture is
smaller than the hosted table.
- Correctness: complete positional rows match across all four runs for
all six cases (quiet, admitted, unadmitted, failed then admitted,
retried, other-company decoy). The script asserts the expected held
result for each case.
- Migration timing: 600,001 `chat_actions` rows (1,759 MB), 300,000 of
them in the index scope. First run through `applyPendingMigrations`: 4.2
s. Rerun after the history row is removed: 0.5 s. Concurrent build
alone: 3.4 s. Index size: 30 MB.
Commands:
```sh
pnpm --filter @paperclipai/server exec tsx ../scripts/benchmark-chat-admission-index.ts
OTHER_PAYLOAD_KIB=2 pnpm --filter @paperclipai/server exec tsx ../scripts/benchmark-chat-admission-index-migration.ts
cd server && npx vitest run src/__tests__/chat-admission-condition.test.ts # 6 passed
pnpm --filter @paperclipai/db check:migrations # passed
pnpm --filter @paperclipai/server typecheck # passed
```
## Risks
- The migration builds one index concurrently. It does not block writes.
On the 1.76 GB local fixture it took about 4 s. A larger hosted table
takes longer, but the build does not lock out reads or writes.
- Writes to `inbound_wakeup` and `failed_run_retry` actions maintain one
more index. Status updates on these rows were already not HOT updates,
because other partial indexes use `status`.
- The planner has no expression statistics for a partial index. The new
test pins that the check uses the index on an analyzed table with
unrelated rows.
- The check SQL does not change, so admission behavior does not change.
> For core feature work, check [`ROADMAP.md`](ROADMAP.md) first and
discuss it in `#dev` before opening the PR. Feature PRs that overlap
with planned core work may need to be redirected — check the roadmap
first. See `CONTRIBUTING.md`.
## Model Used
- Claude Opus 5.5 (Anthropic), model ID `claude-opus-5-5`, used through
Claude Code with tool use and code execution.
## Checklist
- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have searched GitHub for duplicate or related PRs and linked
them above
- [x] I have either (a) linked existing issues with `Fixes: #` / `Closes
#` / `Refs #` OR (b) described the issue in-PR following the relevant
issue template
- [x] I have not referenced internal/instance-local Paperclip issues or
links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip`
URLs)
- [x] My branch name describes the change (e.g. `docs/...`, `fix/...`)
and contains no internal Paperclip ticket id or instance-derived details
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [x] All Paperclip CI gates are green
- [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups
- [x] I will address all Greptile and reviewer comments before
requesting merge
🤖 Generated with [Claude Code](https://claude.com/claude-code)
Co-authored-by: Claude Opus 5.5 <noreply@anthropic.com>
|
||
|
DottaandClaude Opus 5.5
|
96ab5e3d38 |
fix(recovery): read a retained Runner from its own allocation and continue unverifiable no-replay holds from the last save (#20567)
<!-- Write all pull request text in Simplified Technical English (ASD-STE100): short sentences, one instruction per sentence, simple approved vocabulary, and the active voice. --> ## Thinking Path > - Paperclip is the open source app people use to manage AI agents for work > - Native warm runs on a remote sandbox continue a saved session in the next run. The next run first reads the retained Runner lifecycle from the sandbox. > - #20346 abandons the workspace epoch of a run that died during preparation. The next run then restores the last save into a new directory of the same sandbox. > - The retained-sandbox binding check required the old and the new directory to be the same. The warm follow-up failed with `native_controller_recovery_missing_evidence:retained_sandbox_binding` before provider work. > - The failed run's no-replay hold then refused its files with `allocation_ownership_ambiguous`. The task stayed blocked. The text said that Retry "succeeds only after Paperclip is updated", so no click could help. > - This pull request binds the Runner read to the directory that the retained lease recorded, and lets the existing retained-source fallback settle these holds from the last save. > - The benefit is that a moved workspace continues its session, and a hold that cannot be verified continues automatically instead of dead-ending. ## Linked Issues or Issue Description Refs #20346 **What happened?** On staging, a warm native continuation ran about 10 minutes after a deploy. The run before it died during preparation (database deadlock), so its workspace epoch was abandoned. The continuation restored the last save into a new allocation directory of the same Daytona sandbox. It then failed with `native_controller_recovery_missing_evidence:retained_sandbox_binding`, because the retained lease of the committed source run recorded the old directory. The failure recorded a no-replay hold (`native_continuation_requires_reconciliation`, resolved with outcome `blocked`). Workspace recovery refused the source with `allocation_ownership_ambiguous`, because the sandbox's reusable-lease chain had predecessors in another directory and a non-native preparation-only run. The task stayed blocked with "Retry runs the check again and succeeds only after Paperclip is updated." **Expected behavior** The continuation reads the retained Runner state from the directory where that Runner wrote it, and continues. When retained files cannot be verified, the task continues from the last committed save without a person. **Steps to reproduce** 1. Run a warm native session on a reusable remote sandbox and let it commit. 2. Fail the next run during preparation, so that its epoch is abandoned (#20346). 3. Start the next warm continuation. It restores the last save into a new allocation directory and fails with `retained_sandbox_binding`. 4. See the hold refuse its source with `allocation_ownership_ambiguous` and stay blocked. **Paperclip version or commit** Staging `c874cfa4dacc` (includes #20346). ## What Changed - `assertNativeRetainedSandboxBinding` now returns the directory that the retained lease recorded. It accepts a different target directory only when both are canonical sibling allocations of the same execution workspace under the sandbox's `.paperclip-workspaces` (`<workspaceId>` or `<workspaceId>-<epoch>-<leaseId>`). Same sandbox (`providerLeaseId`), environment, run, issue and committed owner are still required. Other directories stay refused. - `restoreRemoteSuspendedRunnerCheckpoint` reads the Runner state from that recorded directory. A moved source must be suspended and settled. A Runner left in the old allocation is never adopted live. - The retained-source fallback (`continueFromLastSavedWorkspace`) and its discovery now also cover the native no-replay hold (`native_continuation_requires_reconciliation`, active or resolved with outcome `blocked`, replay blocked for the same run). Rows saved by earlier releases are discovered without migration. - The fallback owns the Blocked status of such a hold only while the recorded `nativeFailureBlock` status version still matches the task. Otherwise it keeps the newer block and starts no continuation. - The refusal text no longer says "succeeds only after Paperclip is updated", and it promises no fallback. - `doc/execution-semantics.md` describes both rules. ## Verification - Red (unfixed code): `native-controller-recovery.integration.test.ts` "binds a retained Runner read to the source's directory after the workspace moved within the same sandbox" failed with `native_controller_recovery_missing_evidence:retained_sandbox_binding` at `native-controller-recovery.ts:145`, the staging error. - Red (unfixed code): `workspace-recovery-fallback.test.ts` "continues a resolved-but-blocked native no-replay hold from the last save, discovered by the worker" failed: the worker found no due work for the exact staging row. The newer-block safety case and the message case in `system-recovery-state.test.ts` also failed. - Provider boundary: a new test drives `restoreRemoteSuspendedRunnerCheckpoint` through a sandbox runner that refuses paths outside the sandbox workspace base. The suspended case reads `runner-state.json` from the source directory, never the moved root. The ready case is refused with `runner_not_settled` and caches nothing. - Green: `native-controller-recovery.integration.test.ts`, `workspace-recovery-fallback.test.ts` and `system-recovery-state.test.ts` pass (45 tests). The neighbouring suites `workspace-recovery-retry-copyback`, `workspace-recovery-preparation-gates` and `workspace-recovery-stop-proof` pass (135 tests). - Safety cases: another workspace, another parent, a non-canonical path or name (`-0-`, trailing text), `/unrelated` and another sandbox stay refused. A hold whose task moved to a newer Blocked decision keeps the block and starts no continuation. Exactly one continuation is delivered. Native replacement is denied for the abandoned source, so no second executor starts. - `npx tsc --noEmit -p server/tsconfig.json` passes. `pnpm verify` returns exit 2 (a global doc input changed), so required CI supplies the broad coverage. ## Risks - Previous-release state: rows saved by earlier releases carry forward without migration. The binding reads existing lease metadata. The fallback discovers existing resolved-but-blocked holds by their existing evidence fields. - The binding now accepts a sibling allocation directory. The read still binds to the exact sandbox, run, environment and committed owner, and it reads only the source's recorded directory. A non-suspended Runner in a moved allocation is refused, not adopted. - The fallback abandons the unverified epoch and continues from the last committed save with a fresh session. In the staging shape the run did no provider work after it restored that save, so no work is lost. Unverified files are attached to the task when they can be read, as before. - Not verified live: a real warm Codex resume after a moved allocation on Daytona. > For core feature work, check [`ROADMAP.md`](ROADMAP.md) first and discuss it in `#dev` before opening the PR. Feature PRs that overlap with planned core work may need to be redirected — check the roadmap first. See `CONTRIBUTING.md`. ## Model Used - Claude Opus 5.5 (`claude-opus-5-5`), Anthropic, via Claude Code with tool use (shell, file edits, read-only browser access to staging). Extended reasoning enabled. ## Checklist - [x] I have included a thinking path that traces from project context to this change - [x] I have specified the model used (with version and capability details) - [x] I have checked ROADMAP.md and confirmed this PR does not duplicate planned core work - [x] I have searched GitHub for duplicate or related PRs and linked them above - [x] I have either (a) linked existing issues with `Fixes: #` / `Closes #` / `Refs #` OR (b) described the issue in-PR following the relevant issue template - [x] I have not referenced internal/instance-local Paperclip issues or links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip` URLs) - [x] My branch name describes the change (e.g. `docs/...`, `fix/...`) and contains no internal Paperclip ticket id or instance-derived details - [x] I have run tests locally and they pass - [x] I have added or updated tests where applicable - [x] I have updated relevant documentation to reflect my changes - [x] I have considered and documented any risks above - [x] All Paperclip CI gates are green - [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups - [x] I will address all Greptile and reviewer comments before requesting merge 🤖 Generated with [Claude Code](https://claude.com/claude-code) --------- Co-authored-by: Claude Opus 5.5 <noreply@anthropic.com> |
||
|
DottaandPaperclip
|
e01fe7f84a |
perf(workspaces): reuse duplicate cohort source archives (#20574)
Capture identical live sources once within a migration cohort and reuse the completed archive for per-workspace encryption and upload. Bound shared scratch to one capture key per root and retain existing source, journal, and publication guards. Co-Authored-By: Paperclip <noreply@paperclip.ing> |
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|
DottaandClaude Opus 5.5
|
99edcd28a7 |
perf(attention): read each retention candidate kind in its own bounded branch (#20566)
## Thinking Path > - Paperclip is the open source app people use to manage AI agents for work > - The attention retention worker archives old "Needs you" items, such as open decisions, pending questions, failed runs and items in review > - To find its work, the worker reads a page of retention candidates. It reads one page per changed scope, and one single-source read for each check of a due item > - On a hosted stack this candidate read ran 2,835 times at about 1 s per call, 4,201 s of database time in one afternoon window > - The read built every candidate of every kind before it applied the keyset limit. Its company and source filters used the `param is null or column = param` form. Under a generic prepared plan these filters cannot use an index. The failed-run branch also matched retry receipts with a bound LIKE parameter, so it could not use the partial index `heartbeat_run_events_retry_exhausted_idx` > - This pull request reads each kind in its own branch, puts every filter into that branch, and limits each branch to one page > - The benefit is a bounded read for each page, and a primary-key read for each single-source check, with the same rows, order and cursors ## Linked Issues or Issue Description **What existing behavior does this improve?** The attention retention candidate scan in `server/src/services/attention-retention.ts`. **Subsystem affected** Server: attention retention background work (database reads only). **Current behavior** Each page reads all candidates of all selected kinds, then sorts them and keeps 100. Optional filters use `($n is null or column = $n)`. A generic prepared plan cannot use an index for these filters. The single-source check compares `id::text`, so it cannot use the primary key. The retry receipt LIKE pattern is a parameter, so the plan cannot use the partial receipt index. **Proposed behavior** Each kind is one branch with its company, source, issue and keyset filters inside it and `limit 100`. Kinds before the cursor are not read. A source id filter uses the uuid primary key. The receipt pattern is a SQL literal that matches the partial index predicate. The page result does not change. Refs #20386 (adds the partial receipt index that this branch now uses). ## What Changed - `server/src/services/attention-retention.ts`: replace the single union scan with `candidateQuery`. Each source kind is a branch that has its own filters, retention join and one-page limit. The outer query still orders by `(source_kind, source_id)` and keeps 100 rows. - Only add a filter when the scope sets it. There is no `param is null or ...` form now. - A single-source read compares `id = $uuid`. It returns no rows for text that is not the canonical lowercase uuid form. The former `id::text = $text` comparison also never matched such text. - Skip the kinds that come before the keyset cursor kind. `ATTENTION_RETENTION_KIND_ORDER` holds the kind order, and a test checks it against the database collation. - The failed-run branch matches `'Bounded retry exhausted%'` as a literal, so it reads `heartbeat_run_events_retry_exhausted_idx`. - Export `listAttentionRetentionCandidates` for the test and the benchmark. The service uses it without a change in behavior. - New test `server/src/__tests__/attention-retention-candidates.test.ts`. It runs on real PostgreSQL and compares every page, row and cursor with the former scan (kept in the test as an oracle). It covers: one company, all companies, one kind, the blocker kind (which ignores retention), an unknown kind, issue scopes (including uppercase and malformed ids), exact source ids (uppercase, braces, no dashes, empty and malformed text return nothing), a `null` source id from a decoded scope, other-company isolation, inactive companies, kept and archived retention, and failed runs without a lifecycle receipt. - New benchmark `scripts/benchmark-attention-retention-candidates.ts`. It loads the baseline service from git, captures the SQL that each version sends for the same scopes, and times both under custom and generic plans. Each round alternates the order. It fails if the rows differ. - No migration. The existing indexes cover each branch: company and status indexes on each source table, the issues company/status index, and the partial receipt index from #20386. ## Verification - `cd server && npx vitest run src/__tests__/attention-retention-candidates.test.ts`: 10 passed. - `cd server && npx vitest run src/__tests__/attention-retention-work.test.ts`: see the note under Risks. - `cd server && npx tsc --noEmit`: pass. - Benchmark (local SQL measurement only): `pnpm --filter @paperclipai/server exec tsx ../scripts/benchmark-attention-retention-candidates.ts --baseline-ref=8d2bf78323` Embedded PostgreSQL 18.1. Fixture: 12 companies (1 large and 11 at 1/5 size), 38,400 issues, 64,000 runs, 1.29 M run events, 6,400 decisions, 9,600 interactions, 4,800 recovery actions, 7,534 retention rows. Seven samples for each scope, after two warmups, with `plan_cache_mode` forced to custom and then to generic. Rows were equal in every sample. | Plan | Scope | Rows | Before median (min–max) | After median (min–max) | Speedup | EXPLAIN shared blocks before → after | | --- | --- | --- | --- | --- | --- | --- | | generic | single source (check path) | 1 | 4.82 ms (3.81–5.88) | 0.19 ms (0.12–0.66) | 25× | 3,491 → 10 | | generic | company failed runs | 81 | 45.0 ms (40.5–51.7) | 2.9 ms (2.3–4.6) | 15× | 3,752 → 3,752 | | generic | company page 1 | 100 | 39.4 ms (30.1–63.7) | 7.6 ms (5.8–14.3) | 5.2× | 4,396 → 4,719 | | generic | company page 2 | 100 | 33.3 ms (31.2–38.1) | 6.9 ms (5.2–10.3) | 4.8× | 4,237 → 4,712 | | generic | company issue scope | 4 | 11.8 ms (9.8–24.0) | 4.1 ms (3.4–6.4) | 2.9× | 4,243 → 4,225 | | generic | all companies page 1 | 100 | 107.2 ms (100.2–116.0) | 29.3 ms (18.8–64.4) | 3.7× | 13,657 → 14,672 | | custom | single source (check path) | 1 | 2.68 ms (2.01–5.33) | 0.81 ms (0.65–1.50) | 3.3× | 3,491 → 10 | | custom | company failed runs | 81 | 5.7 ms (3.9–15.8) | 4.6 ms (3.2–7.1) | 1.2× | 3,752 → 3,752 | | custom | company page 1 | 100 | 11.7 ms (9.2–13.3) | 10.7 ms (9.4–19.5) | 1.1× (neutral) | 4,396 → 4,719 | | custom | company page 2 | 100 | 11.2 ms (7.6–14.2) | 10.1 ms (8.5–12.0) | 1.1× (neutral) | 4,237 → 4,712 | | custom | company issue scope | 4 | 10.9 ms (9.1–13.3) | 8.4 ms (6.4–10.4) | 1.3× | 4,243 → 4,225 | | custom | all companies page 1 | 100 | 21.3 ms (17.4–25.9) | 24.4 ms (20.3–72.0) | 0.9× (neutral) | 13,688 → 14,672 | - The timing connection uses named prepared statements, as the server does by default. The benchmark checks `pg_prepared_statements` before it collects samples, so the samples reuse the parsed statement. - The driver uses named prepared statements by default, so after five runs PostgreSQL can switch a statement to a generic plan. The generic rows are the relevant case for a busy server. Custom plans were already good for most scopes, and the change is neutral there. - Plan after the change (company page, generic): the failed-run branch reads the partial receipt index (13 blocks), then probes `heartbeat_runs` by primary key. The single-source check reads each primary key and the retention unique index (10 blocks in all). ## Risks - Low behavior risk. The test compares the new pages with the former query on the same data, including cursors in the middle of a kind and at kind boundaries. - Kind skipping depends on the order of kind names. Every kind name is different from the others before its first underscore, so C and linguistic collations give the same order. A test checks the order against the database. - The benchmark fixture is smaller than the hosted database. The hosted cost (about 1 s per call) is larger than the local baseline. I did not measure the hosted improvement. It needs a fresh query-statistics window after deploy. - On this loaded local machine, one full run of `attention-retention-work.test.ts` had 3 tests time out at 30 s (no-run issue finalization, no-run workspace finalization, and interaction create/withdraw). The same 3 tests pass when run alone. CI is the authority for this suite. ## Model Used - Claude Opus 5.5 (`claude-opus-5-5`), Anthropic. Agentic coding with tool use (shell, file edits, local PostgreSQL). ## Checklist - [x] I have included a thinking path that traces from project context to this change - [x] I have specified the model used (with version and capability details) - [x] I have checked ROADMAP.md and confirmed this PR does not duplicate planned core work - [x] I have searched GitHub for duplicate or related PRs and linked them above - [x] I have either (a) linked existing issues with `Fixes: #` / `Closes #` / `Refs #` OR (b) described the issue in-PR following the relevant issue template - [x] I have not referenced internal/instance-local Paperclip issues or links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip` URLs) - [x] My branch name describes the change (e.g. `docs/...`, `fix/...`) and contains no internal Paperclip ticket id or instance-derived details - [x] I have run tests locally and they pass - [x] I have added or updated tests where applicable - [x] I have updated relevant documentation to reflect my changes - [x] I have considered and documented any risks above - [ ] All Paperclip CI gates are green - [ ] Greptile is 5/5 with no open P2s, recommendations, or follow-ups - [x] I will address all Greptile and reviewer comments before requesting merge 🤖 Generated with [Claude Code](https://claude.com/claude-code) --------- Co-authored-by: Claude Opus 5.5 <noreply@anthropic.com> |
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|
DottaandClaude Opus 5.5
|
faaae003a9 |
perf(chat): find the conversation head from open delivery work (#20564)
## Thinking Path
> - Paperclip is the open source app people use to manage AI agents for
work.
> - External chat messages go into a durable delivery queue. Each
conversation drains in provider order.
> - Each drain step reads the head of one conversation. The head query
filters one endpoint's deliveries by state and thread.
> - On a hosted instance, this query ran about 10,000 times at about 300
ms each. The database was busy, and request reads waited behind
background work.
> - PostgreSQL read every processed delivery of the endpoint and its
`normalized_event` value to find a few open rows.
> - This pull request finds the endpoint's open delivery IDs first and
fetches only those rows.
> - The benefit is less background database load. The selected head and
the delivery order do not change.
## Linked Issues or Issue Description
**What existing behavior does this improve?**
The inbound conversation head query
(`earliestOpenConversationDelivery`).
**Subsystem affected**
Server chat inbound delivery queue.
**Current behavior**
The query has `endpoint_id = $1 and (state in ('received', 'retry',
'processing') or (state = 'processed' and <pending inbound wake>))`, a
thread filter on `normalized_event`, and a sort on `normalized_event`
keys. No index matches the `or`. PostgreSQL scans all deliveries of the
endpoint. For each row it reads `normalized_event` to test the thread.
It also reads all of `chat_actions` to build the pending-wake set. A
busy endpoint keeps all of its processed history, so the cost grows with
that history.
**Proposed behavior**
The query selects `id in (<open delivery IDs of the endpoint>)`. That
set is a `union all` of two small reads:
- received, retry and processing deliveries of the endpoint, through the
existing `chat_deliveries_work_idx`;
- processed deliveries that an issued or processing `inbound_wakeup`
action of the same endpoint (and company) still owns.
PostgreSQL fetches only those rows by primary key, then applies the same
reaction, thread and order rules.
**Reason and benefit**
The cost no longer grows with processed history. On a local fixture with
60,000 processed deliveries, the head query reads 1,309 shared buffers
instead of 262,630.
**Breaking changes**
None. There is no schema change, migration, API change, timer or poll
change.
Related work: #17971 changed the pending-wake predicate of the same
queue. #20400 added the index for the other chat delivery statement in
the same report (`select state ...
normalized_event->'githubAutomatic'->'context'->>'deliveryId'`). That
statement already uses the #20400 index on master, so this pull request
does not change it.
## What Changed
- `delivery-ledger.ts`: add `openConversationDeliveryIds(endpointId)`.
It returns the endpoint's open delivery IDs. It selects the same set as
the old state predicate for that endpoint.
- `conversation-queue.ts`: the conversation head query uses `id in
(openConversationDeliveryIds(endpointId))` in place of the state `or`.
The thread filter, reaction exclusion, order, limit and lifecycle
dependency read do not change.
- `inbound-queue-discovery.test.ts`: add a real PostgreSQL test. It
compares the new set with the old predicate on three endpoints. It
covers each state, issued and processing wakes, duplicate wakes, wakes
of non-processed deliveries, processed, other-kind and null-delivery
actions, an action on a different endpoint of the same company, and
reactions. It also checks that the real captured head query returns the
oracle's first row.
- `benchmark-inbound-queue-discovery.ts`: add
`--endpoint-history=<rows>` (a busy endpoint with 4 KiB payloads) and
`--only=<fixture>`. Add a work budget: the treatment head query must
visit at most 100 delivery rows on the history fixtures.
- `doc/DATABASE.md`: describe the head query and the benchmark command.
## Verification
Local SQL measurements. PostgreSQL 17.10 (Postgres.app, macOS arm64),
disposable database, synthetic data, default settings with 256 MB shared
buffers. The host was under heavy load from other work, so timings are
noisy. Shared buffers and visited rows are stable. Each arm has two
warmups and five alternating samples (median [min..max]). Baseline:
`origin/master` at `8d2bf78323`.
| Fixture | Query | Baseline | Treatment | Shared buffers | Delivery
rows visited | Output |
| --- | --- | ---: | ---: | ---: | ---: | --- |
| 60,000 processed, 4 KiB | head | 290.09 ms [220.21..554.19] | 7.34 ms
[5.85..7.68] | 262,630 → 1,309 | 60,002 → 4 | Equal |
| 20,000 processed, 4 KiB | head | 276.02 ms [211.77..322.12] | 34.61 ms
[4.45..194.15] | 67,618 → 486 | 20,002 → 4 | Equal |
| 1,500 processed, 32 KiB | head | 15.88 ms [13.66..21.79] | 2.29 ms
[1.64..7.75] | 10,602 → 80 | 1,502 → 4 | Equal |
| 20 processed | head | 1.49 ms [0.92..3.66] | 1.85 ms [1.01..1.97] | 2
→ 45 | 22 → 968 | Equal |
- The deadline and ready selectors do not change. Their buffers are
identical in both arms; their timings move only with host noise.
- The small control is neutral. On a near-empty table, PostgreSQL picks
a sequential scan for the open-state branch. This costs about 45
buffers.
- The 60,000-row run passes `--require-work-budget`. The baseline
exceeds the budget (`baselineExceedsWorkBudget: true`). This is the
red/green proof. There is no timing threshold in CI.
- On the treatment, the remaining head cost is the scan of
`chat_actions` for pending wakes of the endpoint. The baseline also
reads all of `chat_actions` for its hashed subplan.
- `pnpm exec vitest run src/__tests__/inbound-queue-discovery.test.ts`
(server): 6 tests pass, including the new equivalence test.
- `chat-channels.integration.test.ts` filtered with `-t
"reorder|orders|FIFO|conversation drain|lease renewal|receipt
order|edit|lifecycle"`: 148 assembled chat tests pass. They cover Slack,
Teams, Telegram, Discord and GitHub provider-order drains, head-of-line
barriers, lease loss, lifecycle edits and wake retries.
- `pnpm exec tsc --noEmit -p tsconfig.json` (server) passes.
Reproduce:
```sh
pnpm --filter @paperclipai/server exec tsx ../scripts/benchmark-inbound-queue-discovery.ts --baseline-ref=8d2bf78323 --endpoint-history=60000 --only=endpoint-history --require-work-budget
```
Set `PAPERCLIP_TEST_POSTGRES_ADMIN_URL` to use an existing disposable
PostgreSQL server. The benchmark uses synthetic data only.
## Risks
- Query plans depend on data and settings. These local numbers do not
prove hosted request latency. A follow-up statistics window after deploy
must confirm the gain.
- The pending-wake branch still scans the endpoint's `chat_actions`. A
partial index on pending `inbound_wakeup` actions would remove that
scan. I did not add it, to avoid a migration.
- Low behavior risk. The new set equals the old predicate for each
endpoint, and the order expression is unchanged. Tests compare both on
the same rows.
## Model Used
- Claude Opus 5.5 (`claude-opus-5-5`), Anthropic, with tool use (shell,
file edit) in Claude Code. Extended reasoning was used.
## Checklist
- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have searched GitHub for duplicate or related PRs and linked
them above
- [x] I have either (a) linked existing issues with `Fixes: #` / `Closes
#` / `Refs #` OR (b) described the issue in-PR following the relevant
issue template
- [x] I have not referenced internal/instance-local Paperclip issues or
links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip`
URLs)
- [x] My branch name describes the change (e.g. `docs/...`, `fix/...`)
and contains no internal Paperclip ticket id or instance-derived details
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [x] All Paperclip CI gates are green
- [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups
- [x] I will address all Greptile and reviewer comments before
requesting merge
🤖 Generated with [Claude Code](https://claude.com/claude-code)
---------
Co-authored-by: Claude Opus 5.5 <noreply@anthropic.com>
|
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|
DottaandClaude Opus 5.5
|
56aa160a4e |
perf(native): index heartbeat runs by company and native session (#20560)
## Thinking Path > - Paperclip is the open source app people use to manage AI agents for work. > - Native runs share a native session. Retention, recovery, resume and archive code reads all runs of one session from `heartbeat_runs`. > - On a hosted instance, the native retention lookup ran about 67,000 times in one day at about 22 ms, and about 10,000 times at about 11 ms in a later window. > - No index has `native_session_id`. Each read walks the agent's or the company's run history and filters the rows. > - This pull request adds one concurrent partial index on `(company_id, native_session_id)`. The SQL does not change. > - The benefit is less background database load. Request reads wait less, and the results stay the same. ## Linked Issues or Issue Description **What existing behavior does this improve?** The native session-run lookups. The largest caller is `sessionRetentionBlocker` in native harness backup and checkpoint retention. It selects `id, status, finished_at`, an incomplete-recovery flag and the issue ID for one company, agent and native session. **Subsystem affected** Server native runtime (retention, recovery, resume and archive reads) and the database schema. **Current behavior** `heartbeat_runs` has no index on `native_session_id`. PostgreSQL reads the whole run history of the company (or of the agent through `heartbeat_runs_company_agent_started_idx`) and filters by session. The cost grows with the run history, not with the size of the session. **Proposed behavior** The index finds the few runs of one session directly. Every caller already filters by `company_id` and `native_session_id`, so one index serves the agent-scoped and the issue-scoped reads. **Reason and benefit** This statement family used about 1,500 s of database time in one day on a busy hosted database. The local proof below shows 12.3 ms to 0.04 ms per call. ## What Changed - `packages/db`: add `heartbeat_runs_company_native_session_idx` on `(company_id, native_session_id) WHERE native_session_id IS NOT NULL`. Migration `0457_native_session_run_index` builds it with `CREATE INDEX CONCURRENTLY IF NOT EXISTS`. The migration is registered as a top-level-statement migration, the same way as 0454–0456. - Add a regression test in `native-harness-backup-expiration.test.ts`. It captures the real retention lookup and proves that its plan can use the index. It also pins the company and session scope: a live run of another company with the same session ID does not protect a checkpoint. A live run of the same agent in another session does not protect it. A live run of the same session does protect it. - Add `scripts/benchmark-native-session-run-index.ts`. It runs the real checkpoint retention pass (dry run), captures the exact SQL, and replays it with and without the index. It also times the migration through the normal migration runner. - `doc/DATABASE.md`: describe the index and the benchmark command. ## Verification Local SQL measurements, synthetic data. PostgreSQL 18.1 (embedded test server). Fixture: 100,000 runs (50,000 of the measured agent, 50,000 of a second agent), 4 runs per session, 4 KiB incompressible `runner_profile_json` per run, 638 MB table. Order: no index, index, no index, index. 15 `EXPLAIN (ANALYZE, BUFFERS)` samples after 3 warmups. | Pass | Plan | Median execution | Min / max | Shared buffers | | --- | --- | --- | --- | --- | | No index (1) | Seq Scan | 12.30 ms | 10.33 / 35.27 ms | 3,607 | | Index (2) | Index Scan using `heartbeat_runs_company_native_session_idx` | 0.036 ms | 0.021 / 0.115 ms | 38 | | No index (3) | Seq Scan | 12.38 ms | 10.24 / 26.14 ms | 3,607 | | Index (4) | Index Scan using `heartbeat_runs_company_native_session_idx` | 0.043 ms | 0.022 / 0.098 ms | 38 | - Correctness: the service SQL is the same in every pass. The returned rows (all columns) and the retention result are equal in every pass. The script fails on any difference. - Migration: the first run through the migration runner took 525 ms on the 638 MB fixture. The rerun took 273 ms and skipped the existing index. A direct concurrent build took 145–221 ms. Index size: 1.9 MB. - `pnpm --filter @paperclipai/server exec tsx ../scripts/benchmark-native-session-run-index.ts` - `npx vitest run src/__tests__/native-harness-backup-expiration.test.ts` (server): 108 passed. - `pnpm --filter @paperclipai/db check:migrations`: passed. Five snapshots remain. - `pnpm verify` exits 2 (a new script under `scripts/` is a global CI input). Required CI supplies the broad coverage. ## Risks - Low risk. The migration adds one index concurrently and does not lock writes. The SQL of every caller is unchanged. - The index adds a small write cost to `heartbeat_runs` inserts and to updates of `native_session_id`. Rows with a null session are not indexed. - Persisted run state: no saved run, session or checkpoint shape changes. State saved by the previous release carries forward unchanged. - Hosted latency is not measured yet. The numbers above are local SQL measurements. ## Model Used - Claude Opus 5.5 (Anthropic), model ID `claude-opus-5-5`, used through Claude Code with tool use (shell, file edits, local PostgreSQL). ## Checklist - [x] I have included a thinking path that traces from project context to this change - [x] I have specified the model used (with version and capability details) - [x] I have checked ROADMAP.md and confirmed this PR does not duplicate planned core work - [x] I have searched GitHub for duplicate or related PRs and linked them above - [x] I have either (a) linked existing issues with `Fixes: #` / `Closes #` / `Refs #` OR (b) described the issue in-PR following the relevant issue template - [x] I have not referenced internal/instance-local Paperclip issues or links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip` URLs) - [x] My branch name describes the change (e.g. `docs/...`, `fix/...`) and contains no internal Paperclip ticket id or instance-derived details - [x] I have run tests locally and they pass - [x] I have added or updated tests where applicable - [x] I have updated relevant documentation to reflect my changes - [x] I have considered and documented any risks above - [ ] All Paperclip CI gates are green - [ ] Greptile is 5/5 with no open P2s, recommendations, or follow-ups - [x] I will address all Greptile and reviewer comments before requesting merge 🤖 Generated with [Claude Code](https://claude.com/claude-code) --------- Co-authored-by: Claude Opus 5.5 <noreply@anthropic.com> |
||
|
DottaandPaperclip
|
ce1ee9e89f |
fix: stop prompts from encouraging subtasks (#20362)
## Thinking Path > - Paperclip is the open source app people use to manage AI agents for work. > - Agents read runtime prompts, tool help, skills, and role instructions. > - Several of these texts tell agents to create child tasks as a normal next step. > - One accepted-plan prompt even forbids work on the current task. > - Task parentage is useful, but it does not need a prompt that encourages task creation. > - This pull request removes those prompts and keeps the task APIs available. ## Linked Issues or Issue Description Refs #10642. This change adjusts prompt wording; it does not add delegation-cycle guards. **Current behavior** Prompts tell agents to create children after plan approval, use children for long work, and create a task just to pass context. Onboarding requires a child even for a single request. **Proposed behavior** Continue work on the current task. Keep explicit assignments, optional task creation, parentage, dependencies, and approval gates. Use the separate-task recipes when the user requests that structure or when continuing existing work. **Reason and benefit** Reduce needless task trees without removing subtask support. Keep the patch limited to wording, existing test expectations, and generated catalog data. ## What Changed - Align accepted-plan prompts and remove direct child-creation advice from runtime and error text. - Make task tool descriptions neutral. Keep their fields, defaults, and handlers. - Update the main skill, onboarding, CEO instructions, company templates, specialist workflows, and matching guides. - Keep historical release snapshots intact. Refresh the explicitly seeded schema fixture's catalog digest; the server still verifies historical release snapshot hashes. - Refresh the affected generated catalogs, capability inventory, semantic contracts, and fixture manifest. ## Verification - Final tested head: `c6e304d0c105cdbfbe0b2ab0a233307fcd91a04b`. - All 66 check runs are complete: 60 pass, one is neutral, and five are skipped by CI conditions. Snyk also passes. No checks fail or remain pending. - [PR CI](https://github.com/paperclipai/paperclip/actions/runs/42846226554) passes typecheck, build, server/general tests, all eight E2E shards, Runner support, Runner Rust, and the aggregate verify gate. [Windows](https://github.com/paperclipai/paperclip/actions/runs/42846226546) and [Docker Runner](https://github.com/paperclipai/paperclip/actions/runs/42846226108) also pass. - [Greptile](https://github.com/paperclipai/paperclip/pull/20362#issuecomment-6751419835) and [Paperclip review](https://github.com/paperclipai/paperclip/pull/20362#issuecomment-6751454010) give this exact head 5/5. All six inline threads are resolved. Neither current summary has findings. - Merged master `bf0220d34a156c81853755c3d1365ddc527037de`. Resolved three generated-file conflicts with the canonical generators. - Local verification passes: 473 focused prompt, continuation, UI, catalog, runtime and native-execution tests; Runner TypeScript build; generated metadata; UI token gates; and diff checks. - The prior head `c22018cb0f` failed three SDK evidence tests because two source hashes were stale. Reproduced all three failures locally. The existing generator refreshed only the hashes for the denial-copy file and its test. All 53 affected evidence/source-pin tests then passed, including private-value rejection. No scanner logic, assertions, or runtime dependency pins changed. Current CI confirms the support suite passes. - A prior commit failed the Rust process reaping test. Its cause remains unproven. No Rust code or assertions changed. Later Rust runs pass; this does not establish the cause of the earlier failure. - Local preflight built shared/plugin SDK packages, then stopped because `cargo` is absent. Current-head CI supplies Rust and full build coverage. `pnpm verify --explain` selects broad required CI; full local suites were not repeated. ## Risks - Wording changes guide the model; they do not enforce a ban on subtasks. - Existing installed skill versions and saved custom instructions need their normal refresh process. This PR does not migrate company configuration. - Existing approved task assignments and approval gates remain in effect. ## Model Used - OpenAI GPT-6, through Codex, with reasoning, tool use, and code execution. The exact routed model ID and context-window size were not exposed in this session. ## Checklist - [x] I have included a thinking path that traces from project context to this change - [x] I have specified the model used (with version and capability details) - [x] I have checked ROADMAP.md and confirmed this PR does not duplicate planned core work - [x] I have searched GitHub for duplicate or related PRs and linked them above - [x] I have either (a) linked existing issues with `Fixes: #` / `Closes #` / `Refs #` OR (b) described the issue in-PR following the relevant issue template - [x] I have not referenced internal/instance-local Paperclip issues or links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip` URLs) - [x] My branch name describes the change (e.g. `docs/...`, `fix/...`) and contains no internal Paperclip ticket id or instance-derived details - [x] I have run tests locally and they pass - [x] I have added or updated tests where applicable - [x] I have updated relevant documentation to reflect my changes - [x] I have considered and documented any risks above - [x] All Paperclip CI gates are green - [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups - [x] I will address all Greptile and reviewer comments before requesting merge --------- Co-authored-by: Paperclip <noreply@paperclip.ing> |
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|
DottaandClaude Opus 5.5
|
e5abcbf7a9 |
fix(native): release a restart claim that lapsed during a failed preparation (#20529)
## Thinking Path
> - Paperclip is the open source app people use to manage AI agents for
work
> - After a restart, native restart recovery claims an unfinished run
and prepares it again on the same heartbeat run.
> - The restart claim holds a lease on the run's native coordinator row.
For a remote claim with durable authority, the lease is 60 s.
> - When that preparation fails, the failure path first preserves the
remote workspace. Then it settles the run.
> - When preparation outlived the claim lease, preservation took the
run's own lapsed claim for another owner. It threw
`NativeWorkspaceFinalizationBusyError`, and the execution returned
without settling. The run stayed `running` with no event until a later
scan reclaimed it (4.5 min in one wave, never in another).
> - This pull request releases exactly that lapsed claim and asks
restart recovery to decide on the run right away. It also logs the cause
when the failure path defers.
> - The benefit is that a failed restart-claim preparation is reclaimed
or blocked visibly within seconds, instead of hanging.
## Linked Issues or Issue Description
Refs #20514 (the same restart-chaos investigation).
**What happened?**
In restart-chaos wave `w-20261110T101517-s11936` (Daytona R1, K2, ST1),
run `9d39550a` got a `bootstrap_incomplete` restart claim (generation
3). Its `heartbeat.prepare.run_output` step waited 141 s through an ST1
storage outage. The 60 s claim lease lapsed meanwhile, and the begin
failed with `run_log_writer_authority_lost` when storage came back. The
inner failure path then called `preserveNativeFailedWorkspace`. Its
`ownsClaim` check required an unexpired lease, so the run's own claim
counted as another owner and the call threw
`NativeWorkspaceFinalizationBusyError`.
`preserveNativeWorkspaceOnFailure` set `nativeOwnershipHeld` and the
execution returned before `runCompletion.failRun`. No failure was
recorded, and nothing was logged. The run stayed `running` until a later
scan reclaimed it 4.5 minutes later. In a second wave no such scan came,
and the run stayed `running` for 30 minutes.
**Expected behavior**
A failed preparation must settle or retry, or be claimed promptly by its
next owner. It must not stay `running` with no record.
**Steps to reproduce**
1. Claim a remote native run for restart recovery.
2. Keep its preparation busy past the 60 s claim lease, for example with
a storage outage during `runOutput.begin`.
3. Let preparation fail. The run stays `running` with no failure event.
**Paperclip version or commit**
`master` at
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DottaandClaude
|
c58356003f |
fix(native): give run finalization its own retry budget (#20555)
## Thinking Path
> - Paperclip is the open source app people use to manage AI agents for
work
> - Native runs save an accepted result. Then a finalizer applies that
result to the issue.
> - After a control-plane restart, recovery can resume the same run.
Each resume uses one provider attempt (`coordinator.attempt`).
> - The finalizer used the same `coordinator.attempt` value as its own
retry budget. After three resumes, `attempt` was 3. So the first
transient finalization failure made the coordinator `terminal_failure`.
> - The result was then lost: the issue stayed `in_review` and no Retry
was available. This breaks the rule that a restart must not leave a task
stuck.
> - This pull request gives finalization its own retry count. Provider
attempts no longer use up finalization retries.
> - The benefit: a resumed run that finishes its turn also finishes its
task, and finalization stays bounded.
## Linked Issues or Issue Description
**What happened?**
In restart-chaos wave `w-20261110T044338-s20385`, task t03 (local,
Codex, three K1 SIGKILL restarts, `--db-pressure 4`), recovery resumed
run `d5d0e839` three times (`providerAttempt: 3`). The resumed turn
completed and the server logged `run.result.accepted`, and the run ended
`succeeded`. The first finalization hit `NativeStatusRaceError` three
times under row contention. `recordRetryableFailure` then compared
`coordinator.attempt` (3) with its limit of 3 and wrote
`terminal_failure` / `native_finalization_retry_exhausted`. The run's
`execution.nextAction` is "Reassess against the latest authoritative
issue status version.", which only the `status_cas_exhausted` branch
writes. The second finalize call 2 s later got
`native_finalization_terminal_failure` from `claimCoordinator`. The
issue stayed `in_review` with `canRetry=false`.
**Expected behavior**
A transient finalization failure must stay retryable. The finalizer must
apply the saved result without another provider turn. Finalization must
still have a limit.
**Steps to reproduce**
1. Resume a native run until its coordinator `attempt` is 3, for example
with three restarts.
2. Let the resumed run save an accepted result.
3. Make the first finalization fail with a retryable error.
4. Before this fix, the coordinator goes directly to `terminal_failure`.
The new test
`server/src/__tests__/native-finalization-retry-budget.test.ts`
reproduces this order.
**Paperclip version or commit**
The wave ran at e2b0290213. The bug is still on master at
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DottaandClaude Opus 5.5
|
bd30ef8510 |
perf(chat): authorize the waits of an issue page with one read (#20551)
## Thinking Path > - Paperclip is the open source app people use to manage AI agents for work. > - Agents can work on tasks that start from an external chat, such as Slack. When the agent waits for the next chat message, the task shows "in review" with an external response wait. > - Issue lists and inbox attention show these waits. To show a wait, the server checks that the chat conversation is still authorized: the messages, the destination, the endpoint, and each person who wrote. > - The server did this check one time for each waiting task, and it started all the checks at the same time. A page with 19 waits sent 19 copies of the message-link statement at the same moment, each on its own pool connection, and then 19 copies of each policy read. > - On a hosted database, 19 identical copies of this statement were active at the same moment, about 670 ms each. They were 19 of the 20 active queries. > - This pull request reads the messages of all waits of a page with one statement and shares the policy reads between the waits. Each wait gets the same authorization result as before. > - The benefit is fewer statements and fewer connections for each issue page, so one page cannot fill the pool with copies of one read. ## Linked Issues or Issue Description Refs #20400 (shares wait reads between the callers of one request; this change removes the per-wait fan-out inside that shared read). Refs #18966 (reuses the prepared message-link statement; this change keeps that statement for single runs). **What happened** `listExternalReviewWaits` ran `authorizeChatConversationForBoundRun` one time for each waiting task, inside `Promise.all`. Each call sends the message-link statement, then a resource read, and three reads for each person. A page with N waits sent N copies of each statement at the same time, on up to N pool connections. **Expected behavior** One issue page sends one message-link statement for all of its waits. A resource or a person that is common to many waits is read one time. The authorization result of each wait does not change. **Steps to reproduce** 1. Put many tasks of one company in review with an external chat response wait. 2. Open the issue list or the inbox. 3. Look at the active statements of the database. One copy of the message-link statement runs for each wait. ## What Changed - `server/src/services/native-runtime/chat-attachment-reuse.ts`: - Split `authorizeChatConversationForBoundRun` into steps: read the bound provider and wake comments, read the message rows, and apply the policy to the rows (`authorizeBoundRunLinks`). The single-run path uses the same prepared statement, the same lock modes and the same policy code as before. - Move the message-link join and its policy filters to one query builder, `boundRunLinksQuery`. The single-run statement and the batch statement both use it. - Add `authorizeChatConversationsForBoundRuns(db, companyId, runs)`. It is read-only and takes no locks. It reads the messages of all runs with one statement, then gives each run only the rows that the single-run statement returns for that run (same issue, agent, provider and comments). The runs share each distinct resource and principal read. Each run gets its conversation, or `null` for a policy denial. Other errors are thrown, as before. - Add `isBoundChatAuthorizationDenial` for the three policy denial errors. - `server/src/services/native-runtime/external-review-wait.ts`: `listExternalReviewWaits` uses the batch authorization. The inherited GitHub review-wait reads do not change. - `server/src/__tests__/batched-chat-authorization.integration.test.ts`: new tests on real PostgreSQL. For each case, the batch result must equal the result of separate single-run reads. The cases include each denial: a missing or foreign comment, no comments, no execution marker, a wrong provider, agent or issue, a person without a link or without a membership, a viewer member, a revoked link, a disabled or unavailable destination, a paused endpoint, a closed conversation, an unprocessed delivery, a delivery without a person, and a verifying endpoint. A test also makes sure that one person's decision never applies to another person in the same batch, and that a batch sends one message-link statement. - `scripts/benchmark-chat-bound-authorization.ts`: a local benchmark that loads the pre-fix modules from a baseline commit, checks that both versions return the same waits, and measures them. ## Verification - `pnpm --filter @paperclipai/server exec vitest run src/__tests__/batched-chat-authorization.integration.test.ts src/__tests__/prepared-chat-authorization.integration.test.ts` passes (10 tests). - Mutation check: when I removed the issue filter from the per-run row selection, or shared one principal decision for all people of an endpoint, the new tests failed (1 and 3 failures). - Related suites pass: `heartbeat-reviewed-chat-binding`, `external-chat-wait`, `preserved-native-response-wait`, `chat-attachment-reuse` and `external-review-wait` (392 tests). - `pnpm verify` asks for broader verification because the change adds a file under `scripts/`. Required CI supplies that coverage. - Benchmark: `pnpm --filter @paperclipai/server exec tsx ../scripts/benchmark-chat-bound-authorization.ts --baseline-ref=f4337bb5fb` (the measured pre-fix commit) Benchmark fixture (synthetic, local PostgreSQL 18.1, pool of 10): one company, one Slack endpoint, 20 tasks waiting for a chat response from 5 people, 4 of those waits denied (the person is a suspended member), and 2,000 earlier conversations with 50,000 processed deliveries (6 KiB events, 419 MB). Both versions return the same 16 waits. 15 alternating pairs after warm-up: | One issue page (20 waits) | Before | After | | --- | --- | --- | | Statements sent | 101 | 18 | | Message-link statements | 20 | 1 | | Server time of the message-link statements | 0.50 ms (sum of 20) | 0.13 ms | | Page time, median (min to max) | 8.86 ms (6.94 to 12.05) | 4.05 ms (3.62 to 5.54) | | 8 pages at the same time, median (min to max) | 54.18 ms (48.36 to 89.24) | 14.99 ms (12.60 to 19.59) | ## Risks - The batch must give each wait the same result as a separate read. The batch statement uses the same join and policy filters. It then selects each run's rows with the equality filters of the single-run statement. The policy code is the same function for both paths. The tests compare both paths for each denial case. - Shared reads: the batch reads each resource and each person one time. All reads are plain reads with no locks, as before. A policy change that occurs during one page read can now apply to all waits of the page at the same time, instead of to some of them. - An invalid wake comment id in one wait makes the whole page read fail. This was already true: the failure of one wait rejected the whole `Promise.all`. - The single-run path (attachment reuse, status decisions, run preparation and others) keeps its prepared statement and lock modes. The order of the conditions in its WHERE clause changed; the conditions are the same. - Not proven: why each copy took about 670 ms on the hosted database. Locally one copy takes about 0.03 ms with the expected index plan. The likely causes are the burst of copies on a small compute and cold pages. Verify after deployment that the statement runs at most one time for each issue page request. - No migration and no schema change. ## Model Used - Claude Opus 5.5 (`claude-opus-5-5`), Anthropic, with tool use and code execution in Claude Code. ## Checklist - [x] I have included a thinking path that traces from project context to this change - [x] I have specified the model used (with version and capability details) - [x] I have checked ROADMAP.md and confirmed this PR does not duplicate planned core work - [x] I have searched GitHub for duplicate or related PRs and linked them above - [x] I have either (a) linked existing issues with `Fixes: #` / `Closes #` / `Refs #` OR (b) described the issue in-PR following the relevant issue template - [x] I have not referenced internal/instance-local Paperclip issues or links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip` URLs) - [x] My branch name describes the change (e.g. `docs/...`, `fix/...`) and contains no internal Paperclip ticket id or instance-derived details - [x] I have run tests locally and they pass - [x] I have added or updated tests where applicable - [x] I have updated relevant documentation to reflect my changes - [x] I have considered and documented any risks above - [ ] All Paperclip CI gates are green - [ ] Greptile is 5/5 with no open P2s, recommendations, or follow-ups - [x] I will address all Greptile and reviewer comments before requesting merge 🤖 Generated with [Claude Code](https://claude.com/claude-code) --------- Co-authored-by: Claude Opus 5.5 <noreply@anthropic.com> |
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DottaandPaperclip
|
bf0220d34a |
perf(workspaces): migrate with one archive and no readback (#20554)
## Thinking Path > - Paperclip coordinates agents and keeps their workspace files. > - A legacy workspace must move from a local volume to object storage. > - The importer creates an archive, downloads and restores it, and captures the source again. > - Parent imports also download and recapture children that already have committed snapshots. > - This repeated work makes the one-time migration slow. > - This change copies each source file once and trusts the upload acknowledgement. > - Existing source locks and atomic publication still own the migration. ## Linked Issues or Issue Description **What existing behavior does this improve?** The one-time migration of legacy local and Git workspaces to durable snapshots. **Current behavior** Each workspace is captured twice and restored as a test during migration. Parent imports also read back already imported child snapshots. Capture hashes source files before writing them and scans them again afterward. **Proposed behavior** Build one archive from one source-file read, encrypt it, upload it, and publish its reference. Trust the upload acknowledgement. Reuse journaled uploads after an interrupted process. Retain committed child snapshots by database reference. **Reason and benefit** Remove repeated source reads, temporary copies, complete downloads, and recursive child verification. The tests assert one capture, one upload, and zero migration downloads. **Breaking changes** The archive format stays compatible. File hashes required by current readers are computed inline during the copy. There is no preliminary file-hashing pass. Existing readers can cold-restore the result. Related work: #19817 and #20447. ## What Changed - Add single-pass capture that fills fixed-length checksum fields in the existing archive header after copying. - Remove migration readback, test extraction, fresh-source recapture, and Git integrity scans. - Compute the encrypted archive checksum while writing it. - Reuse acknowledged and journaled uploads without rebuilding or downloading them. - Retain already imported children through their database bindings. Remove the recursive payload verification cache. - Keep company checks, source and writer locks, recovery bindings, journal identities, cancellation, and atomic publication. - Bind archived repository intent paths to the operation without reconstructing an archive to check them. - Update the migration contract and the affected tests. ## Verification - Node 24.22.2 and pnpm 9.15.4 on macOS arm64. - At |
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DottaandClaude Opus 5.5
|
db0d523bc8 |
fix(recovery): start a Retry after a restart cut off a relaunch whose earlier Runners were proven stopped (#20537)
## Thinking Path > - Paperclip is the open source app people use to manage AI agents for work > - When a run fails, a person presses Retry and expects a new run to start > - Before a native Retry starts, Paperclip must prove that the previous run's Runner and provider stopped, so two providers never work on the same task > - When the server is killed after it asked for a Runner launch but before it recorded the Runner's process, there is no PID to check. Paperclip then proves the stop from two facts: no Runner process for the run exists on this host, and the run never saved Runner state > - A run that already crossed restarts did save Runner state, from its earlier Runners. Those Runners were proven stopped, with stop receipts. The proof still refused, because it only asked whether any state belonged to the run > - The Retry returned 202, but the task then waited for a board operator to confirm the stop (`confirm_run_stopped`, `process_identity_missing`), until the task timed out > - This pull request lets the proof accept Runner state that only the earlier, proven-stopped Runners could have written > - The benefit is that a Retry after a restart-interrupted relaunch starts right away, with no operator step ## Linked Issues or Issue Description **Subsystem affected** Server native-run stop proof for a Retry or a new message (`server/src/services/native-local-process-stop.ts`, `unidentifiedLocalRunnerProvenAbsent` in `server/src/services/native-runtime/native-session-executor.ts`). **Problem or motivation** Restart-chaos wave `w-20261110T111245-s701`, task t03 (local, codex, C1, K1/K2, `--storage s3 --storage-faults ST7`): run `f1ffeed3` crossed three restarts. Its event history is: 1. Launch request, process identity, stop receipt (first Runner, killed by K1) 2. Launch request, process identity, stop receipt (second Runner, killed by K1) 3. Launch request at 11:13:54.999, then a K1 kill before the Runner's identity was recorded 4. A fourth controller resumed the run, a K2 drain interrupted its preparation, and the run failed (`adapter_failed`, fixed separately by #20514) The person's Retry at 11:14:37 returned 202. Admission reached `recordUnidentifiedLocalRunnerStop`. No Runner process for the run existed, but the Runner state root held `control-plane-state.json` with this run's id, written by Runners 1 and 2. The proof refused, the issue was saved as `waiting_for_user` / `confirm_run_stopped` / `process_identity_missing`, and the wake stayed deferred until the task timed out about 15 minutes later. The harness graded `R3:retry_no_new_run`. **Proposed solution** A Runner persists its command journal (`runner/runner-state.json`) before any command takes effect, and a provider starts only from a command. Its `runner/process-lineage/` writer marker is written before any supervised process starts. So a launch whose Runner never wrote either file after the launch request cannot own a provider. - The launch request event now records `requestedAt`, taken on the launching host just before any backend may spawn. - `recordUnidentifiedLocalRunnerStop` passes that time on only when the latest process event before the request is a stop receipt (every earlier Runner of the run was proven stopped) or there is none. - `unidentifiedLocalRunnerProvenAbsent` then accepts saved state of this run only when `runner/runner-state.json` (if present) and every `runner/process-lineage/` entry were last modified before `requestedAt`. A file time that falls on a whole second (a coarse-timestamp filesystem) must predate the request by 2 s. The existing checks stay: no `--run-id` Runner process on this host, the launching host matches, and no remote lease. **Previous-release story** A launch request saved by the previous release has no `requestedAt`. It keeps today's proof: it is accepted only without saved Runner state of the run, otherwise the board shows the operator confirmation. Nothing is migrated or rewritten. **Alternatives considered** - Treating a proven-gone controller as proof that its Runner stopped. Local Runners outlive a controller restart (graceful drains reattach them), so a gone controller says nothing about its Runner or provider. - Running `paperclip-runnerd reap-lineage` for each writer marker. It needs a Runner PID and binary on the hot Retry path, and a Runner whose journal write failed has no marker to find. ## What Changed - `native-session-executor.ts`: the `native.process_start_requested` payload adds `requestedAt`. `unidentifiedLocalRunnerProvenAbsent` takes `earlierRunnersStoppedBefore` and accepts this run's saved state only when the Runner journal and lineage entries predate it (`runnerStateUnchangedSince`). - `native-local-process-stop.ts`: `recordUnidentifiedLocalRunnerStop` reads the last two process events and passes the request time only after a stop receipt (or no earlier launch). - `explicit-native-continuation.test.ts`: new embedded-Postgres case. A native run with a proven-stopped Runner, saved Runner state, and a later unidentified relaunch: the Retry is admitted and the stop is recorded. It stays blocked (`process_identity_missing`) when the Runner journal or a lineage entry changed after the request, when the request has no `requestedAt` (previous release), when the earlier Runner has no stop receipt, when a whole-second file time is within 2 s of the request, or when a `--run-id` Runner process is alive. A whole-second time 3.5 s before the request is admitted. ## Verification - Red/green: `cd server && npx vitest run src/services/explicit-native-continuation.test.ts -t "proven stopped"`. On master the `proven` case fails (admission returns null); with the fix all 8 cases pass. - Related suites: `explicit-native-continuation.test.ts`, `issue-confirm-run-stopped-routes.test.ts`, and the unidentified-Runner and stop cases of `native-session-executor.test.ts`. - Live, the s701 seed with the original wave's flags (`--env local --adapters codex,claude --workloads A1,C1 --faults K1,K2 --triggers time,result --concurrency 4 --tasks 4 --seed 701 --storage s3 --storage-faults ST7 --keep`): - `w-20261110T131243-s701` (final head) and `w-20261110T125259-s701`, master plus this fix plus #20514 merged locally: 4/4 pass each, every task crossed a restart, no R3 signature, 0 speed breaches. - `w-20261110T125616-s701`, master plus this fix without #20514: t01 and t02 pass. t03 and t04 hit the drain-during-preparation failure that #20514 fixes (`R3:retry_needed`). The Retry started a new run each time and both tasks finished (`retry_no_new_run` is gone). New launch requests carry `requestedAt`. - The restart timings of these replays did not land in the exact gap between a launch request and its process identity. The red/green test covers that window. ## Risks - Low. The change only widens one fail-closed proof, and only for launch requests saved by this release, after a stop receipt, with Runner files older than the request. The proof compares file times with a time taken on the same host. A backwards wall-clock step between the request and a Runner's first write could hide that write. The `--run-id` process check still has to pass, so that Runner must also be gone. - The Retry path adds one `lstat` per file in a small directory. It adds no wait and no work before `turn.start`. ## Model Used - Claude Opus 5.5 (`claude-opus-5-5`), Anthropic, with tool use and code execution in Claude Code. ## Checklist - [x] I have included a thinking path that traces from project context to this change - [x] I have specified the model used (with version and capability details) - [x] I have checked ROADMAP.md and confirmed this PR does not duplicate planned core work - [x] I have searched GitHub for duplicate or related PRs and linked them above - [x] I have either (a) linked existing issues with `Fixes: #` / `Closes #` / `Refs #` OR (b) described the issue in-PR following the relevant issue template - [x] I have not referenced internal/instance-local Paperclip issues or links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip` URLs) - [x] My branch name describes the change (e.g. `docs/...`, `fix/...`) and contains no internal Paperclip ticket id or instance-derived details - [x] I have run tests locally and they pass - [x] I have added or updated tests where applicable - [x] I have updated relevant documentation to reflect my changes - [x] I have considered and documented any risks above - [ ] All Paperclip CI gates are green - [ ] Greptile is 5/5 with no open P2s, recommendations, or follow-ups - [x] I will address all Greptile and reviewer comments before requesting merge 🤖 Generated with [Claude Code](https://claude.com/claude-code) --------- Co-authored-by: Claude Opus 5.5 <noreply@anthropic.com> |
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|
faae6b919f |
fix(runner): explain task scope on missing tool inputs (#19774)
## Thinking Path
> - Paperclip is the open source app people use to manage AI agents for
work.
> - Agents read saved task documents through native tools.
> - Active-task tools use the task bound to the run. Other task tools
require a task UUID.
> - Agents sometimes call the second set with only a document key.
> - The validator rejects the call, but gives no instruction about the
active-task tool.
> - This pull request adds scope instructions to the tool schemas and
returns them for missing required fields.
> - Agents can correct a rejected call. Task selection and permission
checks stay in place.
## Linked Issues or Issue Description
**What happened?**
Two observed document reads sent only `{"key":"sentry-case"}` to
`read_task_document`. Each returned `Invalid tool input: / must have
required property 'taskId'`. Each later retry with a task UUID returned
without an error.
Pattern: [Task reads fail when agents omit
taskId](https://www.braintrust.dev/app/Paperclip/p/Paperclip%20Staging/patterns/703d8c29-6a40-4aa2-b2c6-e2c5c36b5657).
Related PR: #18824 changed document key validation. It does not address
task scope.
**Expected behavior**
The tool contract must state which task it reads. A missing-field error
must include the schema owner's recovery instructions. A retry must
still pass validation and task permission checks.
**Steps to reproduce**
1. Call `read_task_document` through the MCP bridge with only a document
key.
2. Inspect the error sent to the caller.
3. Retry with an authorized task UUID. Confirm the returned document
belongs to that task.
### Hypothesis and thesis for a fix
Hypothesis: generic tool descriptions contribute to confusion between
active-task and explicit-task tools. An agent can also ignore a correct
schema. These tests do not measure the rate of model mistakes.
Thesis: Paperclip owns task scope instructions. Its five explicit-task
tools now describe the required UUID and the active-task alternative.
The two MCP transports return direct missing-property descriptions from
the admitted schema. The transports do not infer task IDs or apply
Paperclip task policy.
Proof: the same HTTP MCP regression fails on baseline
`f673bd3cb5b5b65ec51781e37355e168c3fe8ae4` and passes with the fix. It
still rejects before handler dispatch. An explicit retry reaches the
requested task. An isolated real API and PostgreSQL test checks the
saved revision, active-task selection, malformed UUIDs, and
cross-company denial through both transports.
## What Changed
- Add UUID and active-task guidance to `get_task`, `comment_on_task`,
and the three explicit-task document tools.
- Return bounded, distinct descriptions for up to three direct missing
required fields. Keep ordinary validation errors unchanged.
- Share this formatter between the Runner and OpenCode MCP bridges.
- Add transport regressions, real route and database checks, and tool
documentation.
## Verification
- Baseline red: both transport regressions return only the
required-property error and fail the recovery instruction assertion.
- Candidate green: 58 Runner and OpenCode transport and error formatter
tests pass on Linux with Node 24.22.2.
- Final-head server verification passed all 115 tests: 113 document-key
checks and two real API integration cases.
- The two local integration cases use real MCP HTTP, agent authority,
API routes, and disposable PostgreSQL. They read a selected other task
and its saved revision, read the active task separately, reject missing
IDs for all five tools, reject malformed UUIDs, and return 404 for a
foreign company task.
- Runner TypeScript typecheck and build pass.
- The full server typecheck passed on head
`03a37e9e50896416cfd45be33bf6dbe3e13169df` with
`PAPERCLIP_TYPECHECK_LOW_MEMORY=1 node scripts/typecheck-layers.mjs`.
The first run ended without a compiler diagnostic. Final-head CI passes
and Greptile is 5/5.
- Full preflight stops because cargo is absent. Rust checks were not run
locally.
- One existing delayed-body fetch test failed with a Node 25 fetch
runtime error. All transport tests pass on Node 24. The first
integration attempt used the wrong fixture return shape; the test was
corrected before the passing run.
- CI follow-up: the Runner test program reported four TS18046 errors
because `Response.json()` returns `unknown` under CI typings. Both tests
now declare the response type. `pnpm exec tsc -p tsconfig.test.json
--noEmit` passes, and both transport suites pass again (56 tests). Final
head `ffccebca19fe9e21a097829adc020679ffa7d86c` passes CI and Greptile
5/5.
- Review follow-up: the foreign task now has a saved document with a
distinct body. Both integration cases passed again after this test-only
change. The read must return 404 and must not return that body.
Current-head CI passes and Greptile is 5/5.
- Final CI:
https://github.com/paperclipai/paperclip/actions/runs/42352822739 . All
required jobs passed for `ffccebca19fe9e21a097829adc020679ffa7d86c`.
Greptile is 5/5 with no unresolved review thread.
- Real local API behavior is verified. External model behavior and
deployed recovery are not verified. No merge or deployment is included.
## Risks
- Missing-field errors now contain schema descriptions. The text is
limited to direct properties in the admitted schema, at most three
distinct descriptions and 1,000 characters each.
- Nested schemas and references do not get recovery text. Their
validation errors remain intact.
- Clearer instructions can help callers recover. They do not guarantee
that a model will choose the correct tool.
## Model Used
- OpenAI GPT-6 via Codex, with tool use and code execution. The exact
deployment model ID and context window are not exposed to this session.
## Checklist
- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have searched GitHub for duplicate or related PRs and linked
them above
- [x] I have either (a) linked existing issues with `Fixes: #` / `Closes
#` / `Refs #` OR (b) described the issue in-PR following the relevant
issue template
- [x] I have not referenced internal/instance-local Paperclip issues or
links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip`
URLs)
- [x] My branch name describes the change (e.g. `docs/...`, `fix/...`)
and contains no internal Paperclip ticket id or instance-derived details
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [x] All Paperclip CI gates are green
- [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups
- [x] I will address all Greptile and reviewer comments before
requesting merge
---------
Co-authored-by: Paperclip <noreply@paperclip.ing>
Co-authored-by: Claude <noreply@anthropic.com>
|
||
|
DottaandClaude Opus 5.5
|
902f376796 |
fix(recovery): keep a remote restart claim's lease through slow preparation (#20540)
## Thinking Path > - Paperclip is the open source app people use to manage AI agents for work > - After a restart, a remote run resumes on the same heartbeat run under a restart claim: a lease on its native coordinator row, 60 s for a remote claim (`REMOTE_CONTROLLER_LEASE_MS`) > - Preparation then runs before the native executor takes its own lease renewal. It includes the run-log begin and the workspace restore, which can each wait out a storage outage for minutes (#20299) > - Preparation renewed the claim only for `reattach_remote_runner`. A `bootstrap_incomplete` or resume claim kept its 60 s lease with nothing renewing it > - So a preparation wait longer than a minute let the lease lapse. The run failed at its next writer-authority check (`run_log_writer_authority_lost`) the moment storage came back > - This PR renews every remote restart claim during preparation. When the same owner's executor claims at the next attempt, it takes over that renewal > - The benefit is that a resumed remote run survives a long storage outage during preparation instead of failing as soon as storage returns ## Linked Issues or Issue Description **What happened?** In restart-chaos waves on Daytona R1 with `--storage s3 --storage-faults ST1` and K2 at +110 s, a resumed `bootstrap_incomplete` run's `heartbeat.prepare.run_output` ended `failed` right after the outage ended: - `w-20261110T101517-s11936` t01, run `9d39550a`. The claim was at 10:19:55 and the outage ended at 10:22:18.15. `run_output` failed at 10:22:18.17, after 141 s. - `w-20261110T081647-s11936` t02, run `9da10424`. The claim was at 08:21:29 and the outage ended at 08:23:30. During the outage the journal claim fails on its head `GET` before it checks authority. The first attempt after the outage reaches `claimFrom`'s `assertAuthority` (`run-log-authority.ts`), which requires a live coordinator lease. That lease expired 60 s after the claim. **Why not just widen the condition?** For a `bootstrap_incomplete` claim, the executor's own claim moves the coordinator attempt to N+1 (`nextNativeProviderAttempt`). `startNativeSessionExecutionLeaseRenewal` shares one renewal per lease owner and threw `native_session_renewal_binding_changed` when the attempt differed. That is presumably why preparation renewal was limited to reattach claims. **Related:** #20460 (live status while a run waits out a storage outage). #20514 settles a failure that this lapse used to leave silent. ## What Changed - `heartbeat/recovery.ts`: start the preparation lease renewal for every remote restart claim (`scope.remote`), not only `reattach_remote_runner`. - `native-runtime/native-execution-lease.ts`: - When the same owner's executor starts its renewal at a higher attempt, it takes over the shared renewal, rebinding the attempt and `onLost`. A lower attempt or any other binding change still throws. - A renewal that failed under the old binding is not counted as a loss. - A failed renewal is not a loss when the coordinator shows the same owner already at a higher attempt (the executor's claim committed while the renewal was in flight). The renewal deadline still ends ownership if no executor takes over. - Tests: one recovery case and three lease-renewal cases (below). ## Verification - `cd server && npx vitest run src/services/native-runtime/native-execution-lease.test.ts src/services/heartbeat/recovery.test.ts src/services/native-runtime/native-execution-lease-reacquire.test.ts src/services/native-runtime/native-runner-restart-lease-renewal.integration.test.ts src/services/native-runtime/native-runner-restart-preparation.integration.test.ts`: 143 pass. `npx tsc --noEmit`: pass. - Red/green, recovery test "keeps a remote bootstrap restart claim through preparation longer than its first lease, then hands it to the next attempt": the claim's first lease ends 4 s in. Preparation runs past it and the run-log writer authority still passes. Then the executor claims attempt 2 and its renewal keeps extending the lease with no detach. - Red with master's `recovery.ts`: the lease is never extended. - Red with only the `recovery.ts` change: `native_session_renewal_binding_changed`. - Green with both. - Red/green, lease unit tests: handover to the next attempt (and refusal of a lower one); a failure under the old binding is not a loss; a failure while the coordinator shows the same owner at a higher attempt is not a loss. All three fail on master. - Live wave: results in a comment below. ## Risks - Medium-low. - The preparation renewal now runs for remote `bootstrap_incomplete` and `resume_dead_runner` claims too. It renews the same coordinator row under the same CAS conditions reattach claims already use. - If preparation truly loses the lease (another owner takes it), its `onLost` still runs (`detachNativeSessionsForRestart`) and authority checks still fence writes. - The new non-loss case applies only when the coordinator names this exact owner at a higher attempt. The renewal deadline still bounds it. - Previous-release state: this persists nothing new. A claim saved by the previous release resumes unchanged; its preparation is simply renewed now. ## Model Used Claude Opus 5.5 (`claude-opus-5-5`), Anthropic, with tool use and code execution in Claude Code. ## Checklist - [x] I have included a thinking path that traces from project context to this change - [x] I have specified the model used (with version and capability details) - [x] I have checked ROADMAP.md and confirmed this PR does not duplicate planned core work - [x] I have searched GitHub for duplicate or related PRs and linked them above - [x] I have either (a) linked existing issues with `Fixes: #` / `Closes #` / `Refs #` OR (b) described the issue in-PR following the relevant issue template - [x] I have not referenced internal/instance-local Paperclip issues or links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip` URLs) - [x] My branch name describes the change (e.g. `docs/...`, `fix/...`) and contains no internal Paperclip ticket id or instance-derived details - [x] I have run tests locally and they pass 🤖 Generated with [Claude Code](https://claude.com/claude-code) --------- Co-authored-by: Claude Opus 5.5 <noreply@anthropic.com> |
||
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|
f4337bb5fb |
test(evals): land the chat catalog eval harness on master (#19614)
## Thinking Path > - Paperclip is the open source app people use to manage AI agents for work > - The chat-feature evals measure whether agents complete real chat requests through the product > - The chat catalog eval harness and its repairs live on the `chat-eval/master-candidate` branch, not on master > - Today's work made 139 of 242 chat evals pass in verified single-case live runs. Each product fix landed on master as its own pull request > - The eval-side changes (setups, graders, fault seams, evidence capture) still exist only on the candidate > - This pull request lands the harness on master. Master stays the source of truth for product behavior > - The benefit is one tree: evals run against master commits, and product fixes reach the evals as soon as they merge ## Linked Issues or Issue Description Refs #19441, Refs #19599, Refs #20270, Refs #20334, Refs #20342, Refs #20344, Refs #20354, Refs #20360, Refs #20373, Refs #20382, Refs #20409 **What existing behavior does this improve?** The chat catalog eval harness and the product it evaluates live on a long-running branch outside master. Eval fixes do not reach master, so master-based eval runs use old setups and graders. **Subsystem affected** `tests/runner-e2e` chat catalog harness, plus a small set of product changes that exist only on the candidate. **Proposed change** Land the harness on master. Every product fix from this eval work already merged to master as its own pull request. Conflicts keep master's product behavior. ## What Changed - Most of the diff (808 of 851 files) is under `tests/runner-e2e/`: chat-catalog domains, scenarios, descriptors, the TestOps manifest, private evidence tooling, and their tests. - Graders now check saved state, setup literals and rendered or clicked links. Many keyword and regex checks on free-form replies are removed. Each changed grader has a bumped `oracleVersion` and calibration tests (a valid reply, a reworded valid reply, and broken variants that must fail). - The shared link helper `hasLink` no longer treats a list link (for example `/COM/issues?view=mine`) as a link to every task without a URL key. - Setup fixes build real state through supported product routes: routine history, agent grants through the board grant route, budget holds with a real cap, and a storage-layer archive fault for `inbox-search.archive-partial-failure`. - Browser boundary journeys (sign-in, chat-disabled, onboarding) now write the standard pass evidence files. - Retargeted cases, approved by the maintainer: `agent-chat.chat-disabled` (Conference Room gate), `agents.restore-instructions` (no saved instruction history), `access.manage-membership` (member permission edits stay board-only). - The private evidence trusted files (`manual-private-handoff.ts`, `manual-private-retention.ts`, `manual-private-report-assets.ts`) are byte-identical to master. - Product files outside `tests/` (43 files, +1,328 −49) carry candidate-only changes that master does not yet have. Most are tests. The main code changes are in `request-human-input.ts`, `heartbeat-run-summary.ts`, `native-completion-feedback.ts`, `native-run-finalizer.ts`, `openapi.ts`, `secrets.ts` and `IssueChatLongThreadPerf.tsx`. ## Verification - `pnpm vitest run chat-catalog-domains chat-catalog-contract.test.ts chat-catalog-consistency.test.ts unit-launcher.test.mjs --testTimeout=180000` in `tests/runner-e2e`: 269 files pass, 3,550 tests pass. - `node --test chat-full-catalog-testops-manifest.test.mjs`: 10 pass. - `node tests/runner-e2e/source-sdk-public-inputs.mjs <HEAD> --check`: no change. - `tsc` for `server` and `tests/runner-e2e`: clean. - Live single-case verification: 139 of 242 cases passed on paid runs, and a person read the saved evidence for each. These are single-case runs, not one full-cohort run. ## Risks - Large diff. Most of it is test-only, but the 43 non-test files change product code paths. Review those files first. - Some graders are now less strict on reply wording. A person must read replies for meaning on those cases. - 42 cases need disposable outside accounts (Notion, Slack, GitHub, Daytona and others) and stay blocked. `access.invite-teammate` stays failing until local agent isolation lands, because the runner's durable state keeps a live invite token. - The paid workflow compares the trusted private-evidence files with master. They are unchanged, so this risk is low. ## Model Used Anthropic Claude Opus 5.5 (`claude-opus-5-5`), with tool use and code execution, in Claude Code. Subagents used the same model. ## Checklist - [x] I have included a thinking path that traces from project context to this change - [x] I have specified the model used (with version and capability details) - [x] I have checked ROADMAP.md and confirmed this PR does not duplicate planned core work - [x] I have searched GitHub for duplicate or related PRs and linked them above - [x] I have either (a) linked existing issues with `Fixes: #` / `Closes #` / `Refs #` OR (b) described the issue in-PR following the relevant issue template - [x] I have not referenced internal/instance-local Paperclip issues or links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip` URLs) - [x] My branch name describes the change (e.g. `docs/...`, `fix/...`) and contains no internal Paperclip ticket id or instance-derived details - [x] I have run tests locally and they pass - [x] I have added or updated tests where applicable - [x] I have updated relevant documentation to reflect my changes - [x] I have considered and documented any risks above - [ ] All Paperclip CI gates are green - [ ] Greptile is 5/5 with no open P2s, recommendations, or follow-ups - [x] I will address all Greptile and reviewer comments before requesting merge 🤖 Generated with [Claude Code](https://claude.com/claude-code) --------- Co-authored-by: Claude Opus 5.5 <noreply@anthropic.com> Co-authored-by: Paperclip <noreply@paperclip.ing> |
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|
DottaandClaude Opus 5.5
|
60b9147e7c |
fix(native): accept harness diagnostics in a remote session-opened bootstrap proof (#20543)
## Thinking Path
> - Paperclip is the open source app people use to manage AI agents for
work
> - Native runs on a remote sandbox (Daytona) keep their controller
state in a Postgres checkpoint. The controller writes every command to
that checkpoint before it sends the command.
> - After a restart, recovery uses that record to prove that a drained
remote bootstrap reached no provider turn. If so, it bootstraps the run
again on the same heartbeat run.
> - A graceful restart seconds after native start often catches a runner
that opened its session and emitted ACPX `harness.diagnostic` events,
but was never sent a turn.
> - The remote no-turn proof did not accept `harness.diagnostic`, so
recovery blocked these runs as `ambiguous_remote_recovery_evidence` and
the task needed a manual Retry.
> - This pull request accepts `harness.diagnostic` in that proof. The
proof's command check still requires that no turn command was ever
issued.
> - The benefit is that a restart just after native start re-bootstraps
the run automatically.
## Linked Issues or Issue Description
Refs #20538 (the harness trigger that reproduced it)
**What happened?**
Restart-chaos wave `w-20261110T091639-s11936` t02, run `c4fc7f03`
(Daytona R1, K2): a K2 landed 13 s after native start. Recovery returned
`ambiguous_remote_recovery_evidence`, and the run blocked with
`native_restart_recovery_blocked` (R3 retry_needed). I reproduced it
with a kept database in `w-20261110T132656-s11936` t02, run `ecd98d55`,
using `--native-trigger native-start+5` from #20538. Decoded controller
checkpoint:
- commands: `run.prepare`, `session.open`, `session.goal.get` (no turn
command);
- committed events: `session.started`, `session.capabilities.updated`,
`session.goal.snapshot`, `harness.diagnostic`, `harness.diagnostic`,
`session.goal.snapshot`;
- `ackedSourceSeq` 6, no `sessionCheckpoint`, no projected provider
events.
`nativeRunnerCheckpointRemoteBootstrapProof` returned `null` only
because `harness.diagnostic` was not in `SESSION_OPEN_EVENT_TYPES`.
**Expected behavior**
Recovery classifies the run `bootstrap_incomplete`
(`remote_session_opened_without_turn`) and bootstraps it again.
**Steps to reproduce**
1. Run a Daytona R1 codex wave with `--faults K2 --native-trigger
native-start+5`.
2. The suspended run is blocked with
`ambiguous_remote_recovery_evidence`.
**Paperclip version or commit**
`master` at
|
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|
DottaandClaude Opus 5.5
|
c9226de30b |
fix(heartbeat): leave a preparing run to the next controller after a graceful drain (#20514)
## Thinking Path
> - Paperclip is the open source app people use to manage AI agents for
work
> - The heartbeat service runs each agent task. A graceful shutdown
(SIGTERM) drains running native runs and hands them to the next server.
> - The drain detaches the native runner session and releases the run's
lease with the recovery state `awaiting_runner_reattach`.
> - An in-process execution can still be in run preparation at that
moment, for example while the run-log journal claim waits on a slow or
unavailable object store.
> - When that execution then lost writer authority
(`run_log_writer_authority_lost`), the generic failure path settled the
run as `adapter_failed`. The next server then saw
`native_continuation_requires_reconciliation`, and replay stayed
blocked.
> - This pull request makes a preparing execution that a restart
detached stop quietly, the same way a detaching native session already
does.
> - The benefit is that a slow preparation step plus a graceful restart
no longer turns into a failed run that needs a manual retry.
## Linked Issues or Issue Description
**What happened?**
In restart-chaos wave `w-20261110T092411-s701` (local, A1/C1, K1/K2, ST7
read-after-write lag), three of four tasks failed with R3
`retry_needed`. For run `218a0425`, the K2 SIGTERM drain wrote
`native.recovery.transition` with `awaiting_runner_reattach` and
released the lease. About 3 s later, the old server's in-process
execution, which was still in `runOutput.begin`, got
`run_log_writer_authority_lost`. `runCompletion.failRun` then settled
the run `adapter_failed` with a durable settlement. The next server
found `native_continuation_requires_reconciliation` and did not replay
the run.
**Expected behavior**
The drain hands the run to the next server. The old execution must not
settle it. A real authority loss outside a drain must still fail the
run.
**Steps to reproduce**
1. Start a native run recovery, and hold it in preparation (slow store,
ST1 outage wait, or ST7 lag).
2. Send SIGTERM so `drainRunningRunsForShutdown` suspends the run.
3. Let preparation continue and check writer authority. The run settles
`adapter_failed`.
**Paperclip version or commit**
`master` at
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DottaandClaude Opus 5.5
|
15a734d068 |
fix(heartbeat): show a storage outage wait as live status, then record it once (#20460)
## Thinking Path > - Paperclip is the open source app people use to manage AI agents for work > - In cloud mode a run reads and writes file storage on its critical path: it starts its run log (`s3_segments`), restores its saved workspace, and saves it again > - Since #20299 a run waits out a storage outage there for up to 5 minutes instead of failing > - That wait was silent. The board showed "running" with no sign of life, so a storage wait looked like a dead run (restart-chaos R5 `silent_dead_run`) > - The first version of this PR wrote a run event on every wait. That writes the run row (`next_event_seq`, `updated_at`) while the run-log claim is still in progress, and it covered only the run-log begin > - This PR shows the wait as live run status instead, writes nothing during the wait, and records one lifecycle event when the wait ends. It covers every critical-path wait in the run's storage scope > - The benefit is that a storage outage shows on the board as waiting, the run's history keeps one honest line about it, and the claim path is left alone ## Linked Issues or Issue Description Refs #20299 (wait out a store outage on a run's critical path). **What happened?** - `w-20261110T043533-s11936` (Daytona R1, ST1 194 s, K2): run `d49f58d8` waited 186 s in `heartbeat.prepare.run_output` with no event. The grader failed it as `R5:silent_dead_run`. - `w-20261110T105903-s11936`: the restore download (`storage.snapshot.download`) waited 182 s with no sign of life. **Expected:** the board shows the run waiting for file storage, and nothing about the notice can disturb run-log ownership. **On the failed `run_output` seen on builds of the first version** (`w-20261110T101517-s11936` t01 run `9d39550a`, `w-20261110T081647-s11936` t02 run `9da10424`): the evidence points to an expired restart lease, not to the notice's row writes. Neither the writer-authority check (`run-log-authority.ts`) nor the journal claim compares `next_event_seq` or `updated_at`. A remote `bootstrap_incomplete` restart claim gets a 60 s lease (`REMOTE_CONTROLLER_LEASE_MS`), and preparation renews it only for `reattach_remote_runner` claims. In t01 the claim was at 10:19:55, the outage ended at 10:22:18.15, and `run_output` failed at 10:22:18.17, on the first authority check after the store came back. That fix ships separately as its own PR. ## What Changed - `storage/storage-unavailable.ts`: - The run's storage scope can carry a wait observer (`reportStorageOutageWaitsTo`). - `retryThroughStorageOutage` tells it about each backoff (`waiting`). The operation that owns the wait reports one `ended` (`recovered` true or false), so nested waits do not double-report. - `storageOutageWaitFor(purpose, work)` names the step. - An observer that throws never changes the wait. `endStorageOutageWaitOn` keeps the observer. - `heartbeat/storage-wait-notice.ts` (new): - Each wait sets live runtime status (phase `waiting_for_storage`, "Waiting for file storage before starting the run log (45s so far)") and publishes `heartbeat.run.progress`. Nothing goes to the database. - When the wait ends, it writes one `lifecycle` warn event: "Waited Ns for file storage before …", with payload `reason: "storage_outage_wait"`, `purpose`, `waitedMs` and `recovered`. - `heartbeat.ts`: installs the notice next to `endStorageOutageWaitOn` (one line). - Purposes: - run-log begin: "starting the run log"; - `loadWorkspaceSnapshotArchive`: "restoring the workspace"; - `uploadWorkspaceSnapshot`: "saving the workspace". - `packages/shared`: adds `waiting_for_storage` to `HeartbeatRunStatusPhase`. - `tests/restart-chaos/live-status-evidence.ts` (new): R5 also counts the board's live run status (`/api/issues/:id/live-runs` `currentStatusUpdatedAt` / `lastEventAt`) as evidence that a running run is alive. Wiring it into `observer.ts` takes one import and one changed line. - `doc/run-log-events.md`: documents the live status and the one event. - Removed: the first version's per-wait run event. ## Verification - `cd server && npx vitest run src/services/heartbeat/run-output.test.ts src/__tests__/storage-outage-wait.test.ts src/services/remote-workspace-snapshot-storage.test.ts src/services/object-byte-journal.test.ts src/__tests__/storage-s3-credential-rotation.test.ts`: 103 pass. - Red/green: with the observer disabled (master behaviour), these new tests fail. With this change they pass: - run-output "shows the wait as live status and writes nothing to the run while its log claim waits": no run-row write and no event during the claim's waits; the live status is `waiting_for_storage`; the claim's writer-authority check still passes; one lifecycle event afterwards; - the helper's observer tests (one end per wait; gave-up reporting; a throwing observer; the Stop signal keeps the observer); - snapshot storage "tells the run it is waiting for storage while a save or a restore waits out an outage". - `PAPERCLIP_IN_WORKTREE=false npx vitest run --config tests/restart-chaos/vitest.config.ts tests/restart-chaos/live-status-evidence.test.ts tests/restart-chaos/observer.test.ts tests/restart-chaos/triggers.test.ts`: 65 pass. `node scripts/typecheck-test-projects.mjs tests/restart-chaos`: pass. `cd server && npx tsc --noEmit`: pass. - Live restart-chaos waves: results in a comment below. ## Risks - Low. - The retry policy, its budget and Stop handling are unchanged. - During a wait, the only new effect is an in-memory status and a live event. - Afterwards, one event per wait, written without blocking the run. - Runtime status is per server process. A board on another instance sees the waiting line only after the closing event. - Shared journal work (`runSharedStorageWork`) keeps its own scope without the observer. Its waits surface through the enclosing run-scoped wait, as before. - Previous-release state: this persists no new run or session state. A run saved by the previous release resumes unchanged. ## Model Used Claude Opus 5.5 (`claude-opus-5-5`), Anthropic, with tool use and code execution in Claude Code. ## Checklist - [x] I have included a thinking path that traces from project context to this change - [x] I have specified the model used (with version and capability details) - [x] I have checked ROADMAP.md and confirmed this PR does not duplicate planned core work - [x] I have searched GitHub for duplicate or related PRs and linked them above - [x] I have either (a) linked existing issues with `Fixes: #` / `Closes #` / `Refs #` OR (b) described the issue in-PR following the relevant issue template - [x] I have not referenced internal/instance-local Paperclip issues or links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip` URLs) - [x] My branch name describes the change (e.g. `docs/...`, `fix/...`) and contains no internal Paperclip ticket id or instance-derived details - [x] I have run tests locally and they pass 🤖 Generated with [Claude Code](https://claude.com/claude-code) --------- Co-authored-by: Claude Opus 5.5 <noreply@anthropic.com> |
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DottaandClaude Opus 5.5
|
bf514759f9 |
fix(run-log): answer 404 for an object run log that was never written (#20539)
## Thinking Path
> - Paperclip is the open source app people use to manage AI agents for
work
> - Each heartbeat run keeps a run log, and the board reads it through
`GET /api/heartbeat-runs/:id/log`
> - A run can store its log in object storage (`s3_segments`)
> - When a run fails before its log is written (for example in
`runOutput.begin`), the object store throws a plain `Error("Object run
log not found")`
> - The route turns that plain error into a 500, so the board shows a
server failure for a log that simply does not exist
> - The local file store already answers 404 `Run log not found` for the
same case, and the UI treats a 404 as an unavailable log
> - This pull request makes the object store throw the same 404
> - The benefit is that a missing object run log looks like a missing
log, and a real storage failure still answers 500
## Linked Issues or Issue Description
**What happened?**
`GET /api/heartbeat-runs/:id/log` answered 500 `Internal server error`
for an `s3_segments` run whose log was never written. The server error
was `Object run log not found` from the object run-log store.
**Expected behavior**
The route answers 404 `Run log not found`, the same as the local file
store. The transcript view already treats a 404 for a finished run as a
missing log, and the log viewer already treats it as an unavailable log.
A real storage failure still answers 500.
**Steps to reproduce**
1. Use S3 storage for run logs.
2. Make a run fail before its run log is written (for example in
`runOutput.begin`).
3. Read `GET /api/heartbeat-runs/<run id>/log`. It answers 500.
**Paperclip version or commit**
`master` at
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DottaandClaude Opus 5.5
|
fea4530a30 |
fix(recovery): retry a preparation killed by a restart in the uncharged lane (#20534)
## Thinking Path > - Paperclip is the open source app people use to manage AI agents for work > - When the control plane restarts, an interrupted run must continue on its own. A user must not have to press Retry because a deploy or a crash happened > - A preparation that a restart stops before the provider starts spent no provider work. It is retried in the uncharged `interrupted_preparation` lane (12 retries), not the charged `transient_failure` lane (2 retries) > - #20496 made that work for a graceful drain (SIGTERM). A hard kill (SIGKILL) during workspace preparation still landed in the charged lane > - Two killed preparations in one chain then spent the failure budget, and the next interruption could not continue: the task needed a manual Retry > - This pull request lets restart recovery hand a killed preparation to the uncharged lane once the killed controller is proven gone > - The benefit is that a task survives any number of restarts during workspace preparation (up to the crash-loop cap) without a Retry click ## Linked Issues or Issue Description **Subsystem affected** Heartbeat restart recovery: the process-loss reaper in `server/src/services/heartbeat/recovery.ts`. **Problem or motivation** The restart-chaos harness on Daytona with `--storage s3 --storage-trigger snapshot-download` (seed 603, task t02, a codex C1 follow-up) kills the server while a workspace snapshot downloads. On builds that contain #20496, two replays still ended in `R3:retry_needed`. The run chain in replay `w-20261110T061107-s603-replay-t02-1794309789008`: 1. K1 SIGKILL during preparation: `process_lost`, then "Scheduled bounded retry 1/2 … transient_failure". 2. K2 drain during preparation: `interrupted_preparation` 1 (the #20496 path, correct). 3. K4 SIGKILL during preparation: `process_lost`, then "Scheduled bounded retry 2/2 … transient_failure". 4. K2 drain during preparation: the failure budget was spent (`failureRetries` 2), so the hold could not continue. The harness had to click Retry. **Root cause** The reaper does record the no-provider-work certificate (`executionRecovery: { kind: "bootstrap", providerWorkStarted: false }`) for a preparing run from another boot. But before it fails the run, `revokeExpiredLegacyControllerWithState` swaps in a random boot id with a 60 s lease, a tombstone that no controller holds. `scheduleBoundedRetryForRun` then asks `isInterruptedNativePreparation`, whose `preparerMayStillUnwind` check sees that live lease and says the old preparer may still be unwinding. The lane falls back to `transient_failure` and charges the failure budget. Every killed preparation is charged, whether or not its controller is provably gone. **Proposed solution** When the reaper has already proven the old controller's recorded process gone (`legacyControllerGone`, the shared owner prover that #20496 also uses) and the revoked state shows the run was still preparing with no process recorded (`restartInterruptedBeforeDispatch`), expire that tombstone lease in the same `process_lost` write. The lane decision then sees an expired lease and applies its existing checks (no coordinator, result or execution events; leases released with stop receipts; workspace repair when needed). Any evidence of provider work, or a controller that cannot be proven gone, keeps today's charged behaviour. **Alternatives considered** - Revoking with an already expired lease: the 60 s revocation lease fences other servers while this pass fails the run, so the expiry belongs in the terminal write. - Teaching `preparerMayStillUnwind` to ignore unstamped leases: that would also skip the wait for a lease of a live controller saved by an older release. ## What Changed - `server/src/services/heartbeat/recovery.ts`: the `process_lost` write sets `controllerLeaseExpiresAt` to now when `restartInterruptedBeforeDispatch && legacyControllerGone`. - `server/src/__tests__/heartbeat-process-recovery.test.ts`: - New: a chain whose preparation is killed twice (controllers proven gone) and then drained. Each kill schedules `interrupted_preparation` (attempts 1 and 2, `failureRetries` 0), and after the drain the restart settlement schedules `interrupted_preparation` 3 without a Retry. - New old-saved/new-resumed case: a preparing run saved by an older release without a controller process stamp keeps the charged `transient_failure` lane. - `doc/execution-semantics.md`: one additive sentence saying the lane also covers a hard kill once the killed controller is proven gone. ## Verification - Red/green: `npx vitest run src/__tests__/heartbeat-process-recovery.test.ts -t "killed twice"` fails on master (the first kill schedules `transient_failure`) and passes with the fix. - Related suites pass: `heartbeat-process-recovery`, `interrupted-preparation-hold-settle`, `execution-recovery-dead-controller`, `legacy-controller-lease` and `ownership-reconciliation-report` (5 files, 521 tests). - Live (Daytona, `--storage s3 --storage-trigger snapshot-download`, replay of `w-20261110T061107-s603/t02` with K1/K2/K4/K2, image `paperclip-daytona-runner@sha256:05a4a092…` whose runner content matches this branch): running; the result will be posted as a comment. ## Risks - Low. The change applies only when the shared owner prover returns `gone` for the exact recorded controller and the run was still preparing with no process recorded. The lease's boot id stays the random revocation id, so the old controller can still never renew it. Old rows without a controller stamp keep today's behaviour. - Previous-release story (upgrade-safe-run-state): no persisted shape changes. A run saved mid-preparation by an older release has no `controllerProcess` stamp, cannot be proven gone, and keeps the charged lane (covered by the new old-saved test). Retries an older release already scheduled in the charged lane keep their counters. ## Model Used - Claude Opus 5.5 (`claude-opus-5-5`), Anthropic, with tool use and code execution in Claude Code. ## Checklist - [x] I have included a thinking path that traces from project context to this change - [x] I have specified the model used (with version and capability details) - [x] I have checked ROADMAP.md and confirmed this PR does not duplicate planned core work - [x] I have searched GitHub for duplicate or related PRs and linked them above - [x] I have either (a) linked existing issues with `Fixes: #` / `Closes #` / `Refs #` OR (b) described the issue in-PR following the relevant issue template - [x] I have not referenced internal/instance-local Paperclip issues or links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip` URLs) - [x] My branch name describes the change (e.g. `docs/...`, `fix/...`) and contains no internal Paperclip ticket id or instance-derived details - [x] I have run tests locally and they pass - [x] I have added or updated tests where applicable - [x] I have updated relevant documentation to reflect my changes - [x] I have considered and documented any risks above - [ ] All Paperclip CI gates are green - [ ] Greptile is 5/5 with no open P2s, recommendations, or follow-ups - [x] I will address all Greptile and reviewer comments before requesting merge 🤖 Generated with [Claude Code](https://claude.com/claude-code) --------- Co-authored-by: Claude Opus 5.5 <noreply@anthropic.com> |
||
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DottaandClaude Opus 5.5
|
adb0e77a4c |
fix(run-log): read a resumed run's own log while the store still hides its new head (#20523)
## Thinking Path > - Paperclip is the open source app people use to manage AI agents for work > - In cloud mode, run logs use the `s3_segments` store: an object byte journal whose `head.json` names the current writer and the committed bytes > - When a run resumes after a restart, `runOutput.begin` claims the journal (this publishes a new `head.json`) and then reads the existing log prefix to find where native log export continues (`nativeRunLogPrefixCursor`) > - On an S3-compatible store with read-after-write lag, the `head.json` that the claim just published can read as `NoSuchKey` for some seconds > - The read then throws "Object run log not found", and the resumed run settles as `adapter_failed` and needs a Retry > - This pull request makes a read through a live writer's own handle use that writer's head when the store does not show the head yet, and makes the one-time source-prefix proof step treat a hidden head as "proof unavailable" instead of "another writer" > - The benefit is that a run that resumes right after a restart survives a store that shows new objects late, with no added wait ## Linked Issues or Issue Description Refs #20509 (the same lag on the journal claim). **What happened?** In restart-chaos wave w-20261110T095205-s701 (local, `--storage s3 --storage-faults ST7`, K1/K2, on master with #20504, #20509 and #20514), two resumed runs (t03 run 4f4fc7bc, t04 run c92c53d8) failed in `runOutput.begin`. The error was "Object run log not found" from `object-run-log-store.ts` `read`, called by `nativeRunLogPrefixCursor` (`native-run-log-export.ts:314`). Both runs settled `adapter_failed`, and the grade was R3 `retry_needed`. ST7 makes a GET or HEAD of a just-written key answer 404 `NoSuchKey` for 5–30 s. **Expected behavior** A resumed run reads the log prefix that it just claimed and continues. A store that shows a new object late must not look like a missing log. **Steps to reproduce** Write a run log, begin a successor writer on a new store instance, then make `head.json` read as `NoSuchKey`. `read(successor)` throws "Object run log not found". ## What Changed - `server/src/services/object-run-log-store.ts`: `read()` reads the head from the store as before. When the store says the head does not exist and this process has a live writer for that handle, it uses the writer's head. The writer published that head, so it proves the log exists. A handle without a live writer still fails at once with "Object run log not found". - `server/src/services/object-byte-journal.ts`: `recordVerifiedSourcePrefix` reads the head again to confirm ownership before it publishes the optional source-prefix proof. When that head reads as missing, it now throws `ObjectJournalSourcePrefixProofUnavailableError` (the existing "proof is optional" result). The store then continues without the proof, and the next resume scans the prefix again. A visible head with a different etag, a closed head or a deleted head still fails as `ObjectJournalConflictError`. Later appends still publish the head with a conditional write against the writer's etag, so another writer is still detected. - `server/src/services/object-run-log-store.test.ts`: a test hides the successor's just-published `head.json` for the full resume sequence that `nativeRunLogPrefixCursor` runs against the store (`read`, then `recordVerifiedSourcePrefix`). Before this change, `read` fails with "Object run log not found"; with only the read fix, the proof step fails with "The output journal is owned by another writer". After both, the read returns records 1–3, the proof is marked unavailable, and a later append and read return records 1–4. A second test checks that a read of a log that was never written still fails at once. ## Verification - `cd server && npx vitest run src/services/object-byte-journal.test.ts src/services/object-run-log-store.test.ts src/services/object-run-log-store-tail-read.test.ts src/services/run-log-store.test.ts src/services/run-log-store-cancellation.test.ts`: 87 pass. The new resume test fails with "Object run log not found" without the read fix, and with "The output journal is owned by another writer" without the proof fix. - `cd server && npx vitest run src/services/native-runtime/native-run-log-recovery.test.ts src/services/native-runtime/native-run-log-watermark.test.ts`: 27 pass. - `cd server && npx tsc --noEmit -p tsconfig.json` passes. - Live: a local ST7 rerun (seed 701) on a build with this fix follows in a comment. ## Risks - Low risk. The read change only affects a read whose store head is missing and whose handle has a live writer in this process. All other reads behave as before, including fetch counts and the cache. - When the head is hidden during the proof step, the proof is skipped for this attempt. The next resume of the same run scans the log prefix once more. This is the existing degraded path for a proof outage. - The fix does not wait for lagged segment objects. A segment that the previous server wrote less than the lag window before a restart can still read as `NoSuchKey` during the prefix scan. The wave evidence shows only the head lag. A broad segment wait broke existing failure tests, so it is not part of this change. ## Model Used - Claude Opus 5.5 (`claude-opus-5-5`), Anthropic, with tool use and code execution in Claude Code. ## Checklist - [x] I have included a thinking path that traces from project context to this change - [x] I have specified the model used (with version and capability details) - [x] I have checked ROADMAP.md and confirmed this PR does not duplicate planned core work - [x] I have searched GitHub for duplicate or related PRs and linked them above - [x] I have either (a) linked existing issues with `Fixes: #` / `Closes #` / `Refs #` OR (b) described the issue in-PR following the relevant issue template - [x] I have not referenced internal/instance-local Paperclip issues or links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip` URLs) - [x] My branch name describes the change (e.g. `docs/...`, `fix/...`) and contains no internal Paperclip ticket id or instance-derived details - [x] I have run tests locally and they pass - [x] I have added or updated tests where applicable - [x] I have updated relevant documentation to reflect my changes - [x] I have considered and documented any risks above - [ ] All Paperclip CI gates are green - [ ] Greptile is 5/5 with no open P2s, recommendations, or follow-ups - [x] I will address all Greptile and reviewer comments before requesting merge 🤖 Generated with [Claude Code](https://claude.com/claude-code) --------- Co-authored-by: Claude Opus 5.5 <noreply@anthropic.com> |
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DottaandClaude
|
bf45700ca3 |
fix(native): make Retry work after a turn start cut off once Codex recorded the turn (#20516)
## Thinking Path > - Paperclip is the open source app people use to manage AI agents for work > - A native Codex run sends `turn/start` through its runner. A control-plane restart can kill the runner and Codex while that request is in flight > - #20507 lets the runner resume by itself when Codex's thread history proves the turn was never created. When Codex did record the turn, the turn may have done work, so the runner still fails closed and nothing replays it > - That branch must still end in a Retry that works. The next run on the same conversation is refused at the runner-state fence before it asks for a runner. #20507 let Retry continue after that run by matching the refusal's error text > - Driving that branch end to end with the real runner exposed a second dead end. When the owner's runner dies, its provider-session close cannot prove suspension, so this server process can keep an operator-required cleanup quarantine for the task. Retry was then refused outright ("Send a new message") > - This pull request replaces the text match with a server-authored run-log event, lets Retry take the same verified-stop path as a new message, and adds a real-runner test of the whole branch: the cut-off owner fails closed, the follow-up is refused with structured proof, Retry is admitted, and the fresh Retry run completes > - The benefit is that this restart window cannot strand a task, and the Retry gate no longer depends on error wording ## Linked Issues or Issue Description **What happened?** Follow-up to #20507 (restart-chaos wave `w-20261110T033426-s108`, t03). #20507 left one item open: prove that a person's Retry produces a working run when the restart cut off `turn.start` after Codex recorded the turn. It also matched the fence refusal by its error text. **Expected behavior** After that cut-off, the owner stays failed closed and the turn is never started again by itself. A person's Retry starts a new run that completes. It never fails with `quarantine_owner_unverified` and never returns 202 with no run. **Steps to reproduce** 1. Run `pnpm --filter @paperclipai/server exec vitest run src/services/native-runtime/native-cut-turn-start-retry.integration.test.ts`. 2. Without the new event, the test fails: the refused follow-up has no proof that it never launched, so Retry after it would wait on `process_identity_missing`. ## What Changed - `native-session-executor.ts`: when the runner-state fence refuses a run before launch (`prior_owner_*` or `legacy_prior_owner_*`), the executor records the server-authored event `native.prior_owner_fence_refused` with the closed refusal `reason`, then fails the run as before. A failed write leaves the run held (the safe side). - `native-local-process-stop.ts`: `nativeRunNeverLaunched` accepts a failed run that has this event (and still no launch, identity, `adapter.invoke` or runner-sourced event). It no longer reads the error text. - `explicit-native-continuation.ts`: when the task's in-process cleanup quarantine is operator-required, a Retry no longer returns `cleanup_quarantined` at once. Like a new message, it must first pass `verifyStoppedNativeSessionForContinuation`, which releases the quarantine and records `native.stopped_conversation_verified`. A native Retry always starts a fresh conversation (`forceFreshSession`), so it never resumes the interrupted turn. If the proof fails, Retry still returns `cleanup_quarantined`. - `verifyStoppedNativeSessionForContinuation` (`native-session-executor.ts`), three narrow additions: - a run with `native.prior_owner_fence_refused` may stand in for the saved state's owner, like a run refused by the cleanup quarantine (both were refused before launch); - when the session root is gone, it reads the fence's single `identity_indeterminate` quarantined copy of the owner's state (several copies stay ambiguous); - a provider startup attempt in phase `initialization_failed` whose direct child exited and whose process and process group are gone no longer blocks the proof. A same-run restore that fails closed leaves exactly this record. Those PIDs are also re-checked before the quarantine is released. - New real-runnerd integration test `native-cut-turn-start-retry.integration.test.ts` (real runnerd and fake Codex with `--hang-turn-start after`): 1. The owner run's `turn/start` hangs after Codex recorded the turn; the runner and Codex are killed. The owner's provider state keeps the ambiguous start, and the thread history keeps the turn. 2. The same-run resume restores the runner and fails closed with "cannot safely recover an ambiguous Codex turn start". Codex saw exactly one `turn/start`. 3. A follow-up on the same conversation is refused with `prior_owner_*`, never `quarantine_owner_unverified`. It records `native.prior_owner_fence_refused`, launches nothing, and `nativeRunNeverLaunched` is true for it. 4. The owner's operator-required in-process cleanup quarantine is pinned (whether the real close lands there is timing-dependent; about half of the local runs did). 5. Retry of the refused follow-up passes `admitExplicitNativeContinuation` (not a dry run) with no block reason, releases the quarantine and records `native.stopped_conversation_verified`. 6. The Retry run, prepared with a fresh conversation as task Retry does (`forceFreshSession`), uses a different runner-state root and completes with exit code 0. Codex saw one new `thread/start` and one new `turn/start`; the cut-off turn was never started again. - `explicit-native-continuation.test.ts`: the fence rows now insert the event. A new row shows that the refusal text alone keeps the run held. The "worker loss (retry)" case now expects a verified Retry to be admitted like a new message. - `native-recovered-owner-followup.test.ts`: a fixture event moves to a free sequence number, because the refused follow-up now writes its own event. - Docs: `doc/run-log-events.md` (new event) and `packages/paperclip-runner/docs/durable-recovery.md`. ## Verification - Red/green: - Without the event write, the integration test fails (no fence event, so the follow-up is not proven unlaunched). - Without the gate and proof changes, it fails with `expected [ 'cleanup_quarantined' ] to deeply equal []`: Retry is refused while the owner's quarantine is held. - With all changes, it passes. - `vitest run` of `native-recovered-owner-followup`, `explicit-native-continuation` (427 tests), `quarantined-task-retry`, `issue-confirm-run-stopped-routes`, `native-finalization-recovery`, `task-interruption-query`, `execution-projection`, `chat-run-publications`, `closed-native-receipt-accounting`, `agent-live-run-routes` and the new integration test pass. - Server `tsc --noEmit` passes. - Runner code and the pack `contractDigest` do not change. ## Risks - Low-medium risk. The new event is written only on the fence refusal path, which already fails the run. It is local run-log data (no Telemetry or OpenTelemetry). - Retry after an operator-required cleanup quarantine is a behaviour change: it was always refused, and now it is admitted only after the same exact stop proof a new message needs. That proof checks the owner's runner stop record, every recorded provider and startup PID and process group, and the unchanged state fingerprint before it releases the quarantine. - A run refused by a build between #20507 and this change has only the error text. It stays held on `process_identity_missing` until a person sends a new message or the board confirms the stop. #20507 has not shipped in a release yet. - The test models the restart in-process: it kills the runner and Codex and calls the executor again. It does not drive the HTTP Retry route; the route's own behaviour (fresh conversation, admission gate) is covered by existing tests and by `nativeRunNeverLaunched` here. - Open decision, unchanged: a turn Codex recorded before the restart is never replayed or adopted. Continuing is a person's decision. > For core feature work, check [`ROADMAP.md`](ROADMAP.md) first and discuss it in `#dev` before opening the PR. Feature PRs that overlap with planned core work may need to be redirected — check the roadmap first. See `CONTRIBUTING.md`. ## Model Used - Claude Opus 5.5 (`claude-opus-5-5`), via Claude Code with tool use (shell, file edits, test execution). ## Checklist - [x] I have included a thinking path that traces from project context to this change - [x] I have specified the model used (with version and capability details) - [x] I have checked ROADMAP.md and confirmed this PR does not duplicate planned core work - [x] I have searched GitHub for duplicate or related PRs and linked them above - [x] I have either (a) linked existing issues with `Fixes: #` / `Closes #` / `Refs #` OR (b) described the issue in-PR following the relevant issue template - [x] I have not referenced internal/instance-local Paperclip issues or links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip` URLs) - [x] My branch name describes the change (e.g. `docs/...`, `fix/...`) and contains no internal Paperclip ticket id or instance-derived details - [x] I have run tests locally and they pass - [x] I have added or updated tests where applicable - [x] I have updated relevant documentation to reflect my changes - [x] I have considered and documented any risks above - [ ] All Paperclip CI gates are green - [ ] Greptile is 5/5 with no open P2s, recommendations, or follow-ups - [x] I will address all Greptile and reviewer comments before requesting merge Refs #20507 🤖 Generated with [Claude Code](https://claude.com/claude-code) --------- Co-authored-by: Claude <noreply@anthropic.com> |
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DottaandClaude Opus 5.5
|
93faca77ef |
fix(recovery): settle a drained run's hold once its controller is proven gone (#20496)
## Thinking Path > - Paperclip is the open source app people use to manage AI agents for work > - When the control plane restarts, an interrupted run must continue on its own. A user must not have to press Retry because a deploy happened > - A graceful drain (SIGTERM) marks a preparing legacy run `interrupted` and exits, but the run keeps its legacy controller lease for up to 60 s more > - After the restart, `settleUnrecoverableExecutions` skips the run's recovery hold while that lease is live, in case a living controller is still unwinding a Stop > - The controller is the drained process, which is gone. For up to a minute, the task shows "Couldn't finish this attempt" with a Retry button, before the automatic continuation starts > - This pull request lets the disposition proceed when the shared owner prover proves the lease's recorded controller process gone, and expires that exact lease, so the held-preparation continuation also starts at once > - The benefit is that a run drained during workspace preparation continues automatically right after the restart, without a Retry click ## Linked Issues or Issue Description **Subsystem affected** Server execution recovery: the disposition of `legacy_execution_requires_reconciliation` holds (`server/src/services/execution-recovery-resolution.ts`). **Problem or motivation** The restart-chaos harness can now restart the server while it is in an S3 transfer (#20451). The wave ran on Daytona with `--storage s3 --storage-trigger snapshot-download`. A K2 drain interrupted a C1 follow-up run while its workspace snapshot was downloading, then a second K2 drain interrupted the automatic retry during its restore. The task then showed the board-owned "Couldn't finish this attempt. Your message is saved. Retry" state, and the harness had to click Retry (`R3:retry_needed:C1:K2`). A `--keep` replay reproduced it. The kept database shows a run drained at 07:08:05 with `controller_lease_expires_at` 07:09:04.98. The server was ready again at 07:08:45. Its disposition did not settle the hold until 07:09:14.8. The automatic continuation was then delegated, because the user's Retry had already started a run. **Proposed solution** Before the disposition transaction, ask the shared owner prover (`legacyControllerProvenGone`) whether the live lease's recorded controller process is gone. For that exact controller boot id only, skip the wait and expire the lease in the same transaction (compare-and-swap on run, company and boot id). The later checks (`isInterruptedNativePreparation`, `isFailedNativePreparation`, the held-preparation settlement) then see an expired lease and schedule the `interrupted_preparation` successor. A lease held by a live process, including this one, still blocks as before. **Alternatives considered** Expiring the lease in the drain itself. The drain runs before the process exits, so the owner proof after the restart is the safer evidence. ## What Changed - `legacy-controller-lease.ts`: new `provenGoneLegacyControllerBootId(db, companyId, runId)`. It returns the boot id of a legacy run's unexpired controller lease when the shared prover proves that controller's recorded process gone, else null. - `execution-recovery-resolution.ts`: `settleUnrecoverableExecutions` computes that boot id before its transaction. When the live lease's boot id matches, it expires that lease and settles the hold instead of waiting. - New `execution-recovery-dead-controller.test.ts` (embedded Postgres): a drained run whose controller process has exited is settled at once, its lease is expired, and `isInterruptedNativePreparation` turns true (continuation eligible) while the original lease would still run for about 55 s. A lease held by the current process still waits and keeps its expiry. ## Verification - Red/green: `npx vitest run src/services/execution-recovery-dead-controller.test.ts` fails on master (the hold stays `active`) and passes with the fix. - Related suites pass: `task-retry`, `execution-control-work`, `heartbeat-process-recovery` and `native-startup-retry.integration` with the new file (5 files, 573 tests). - Live: the Daytona `--storage s3 --storage-trigger snapshot-download` rerun on a build with this fix will be posted as a comment. ## Risks - Low. The change only removes a wait when the shared owner prover returns `gone` for the exact recorded controller. An unprovable or alive controller keeps the old behaviour. The prover runs outside the row-locked transaction, and only for candidates whose lease is still live. ## Model Used - Claude Opus 5.5 (`claude-opus-5-5`), Anthropic, with tool use and code execution in Claude Code. ## Checklist - [x] I have included a thinking path that traces from project context to this change - [x] I have specified the model used (with version and capability details) - [x] I have checked ROADMAP.md and confirmed this PR does not duplicate planned core work - [x] I have searched GitHub for duplicate or related PRs and linked them above - [x] I have either (a) linked existing issues with `Fixes: #` / `Closes #` / `Refs #` OR (b) described the issue in-PR following the relevant issue template - [x] I have not referenced internal/instance-local Paperclip issues or links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip` URLs) - [x] My branch name describes the change (e.g. `docs/...`, `fix/...`) and contains no internal Paperclip ticket id or instance-derived details - [x] I have run tests locally and they pass - [x] I have added or updated tests where applicable - [x] I have updated relevant documentation to reflect my changes - [x] I have considered and documented any risks above - [ ] All Paperclip CI gates are green - [ ] Greptile is 5/5 with no open P2s, recommendations, or follow-ups - [x] I will address all Greptile and reviewer comments before requesting merge 🤖 Generated with [Claude Code](https://claude.com/claude-code) --------- Co-authored-by: Claude Opus 5.5 <noreply@anthropic.com> |
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DottaandClaude Opus 5.5
|
c0593b69f1 |
fix(accounting): close a remote-Runner turn completed across a session restore as a lower bound (#20524)
## Thinking Path > - Paperclip is the open source app people use to manage AI agents for work. > - Native runs settle their charge once the final usage receipt is complete. > - #20517 fixed one case for the local Runner. If a restart stops the provider before a turn's final usage report, and the restored Runner then reports that turn completed, the turn now closes as a lower bound instead of waiting 10 minutes. > - Remote Runners deliver usage through a separate producer-owned receiver. That receiver dropped `session.resumed`, so the same turn there still waited for the 10-minute closure timeout. > - This pull request applies the #20517 rule to that receiver. > - The benefit is that remote ACPX and OpenCode runs settle promptly with an honest lower-bound label after a mid-turn restore. ## Linked Issues or Issue Description Refs #20517. **What happened?** After #20517, `session.resumed` reached turn accounting only through the local Runner's fallback recorder. The remote producer receiver (`native-usage-delivery.ts`) and the session-authority filter (`isNativeUsageAccountingEvent`) both dropped it. A remote ACPX or OpenCode turn that was open across a session restore, and then reported terminal without a complete report, left the receipt incomplete until the closure timeout. **Expected behavior** Same rule as the local Runner. Such a turn closes as a lower bound right away. A complete report that arrives after the restore is still used, and a turn that starts after the restore stays pending until its own report is complete. **Steps to reproduce** `native-usage-delivery.integration.test.ts > a turn restored mid-turn on a remote Runner > closes the turn as a lower bound, also after the controller restarts between restore and terminal` fails on master: the receipt stays `accountingReceiptReady: false`. ## What Changed - **Receiver (`createNativeUsageReceiver`).** It now accepts `session.resumed` for turn-reporting providers (ACPX, OpenCode) while a turn is open. It journals the restore as a receipt like any other producer event, so turn accounting marks the open turn restored. A replacement controller rebuilds the same state from that journal. - **Restores never fail delivery.** A restore from another run or source, or one with no open turn, is ignored, not rejected. An unacknowledged lifecycle event would otherwise replay without end. - **Session-authority filter.** `acceptAccountingEvent` now uses a new `isNativeUsageDeliveryEvent`: the usage events plus `session.resumed`. A restore for another run is ignored there too. - **Recovery routing is unchanged.** `acceptRecoveryAccountingEvent` and `onRecoveryAccountingEvent` keep the usage-only `isNativeUsageAccountingEvent`, so a source run's restore never requires a proven recovery source. - **Turn accounting** gets a `hasOpenTurn()` helper. - **Docs:** `doc/SPEC-implementation.md` now covers both Runners. ## Verification - `native-usage-delivery.integration.test.ts`, describe `a turn restored mid-turn on a remote Runner` (real PostgreSQL): | Test | On master | Here | |---|---|---| | `closes the turn as a lower bound, also after the controller restarts between restore and terminal`: the restore is journaled by one receiver and the terminal arrives at a rebuilt one; replaying everything again is idempotent | fails | passes | | `keeps the turn's own final report when it arrives after the restore` (guard) | passes | passes | | `keeps a turn started after the restore pending, and journals nothing for a restore with no open turn` (guard) | passes | passes | - `native-session-executor.test.ts > binds retained warm transport usage to the successor run authority` covers routing through the session-authority filter: - a current-run restore reaches the successor's capture; - a draining-run restore reaches the drained capture; - an unrelated-run restore resolves with no capture; - recovery routing ignores a source restore. It fails when the filter is reverted to `isNativeUsageAccountingEvent`. - Related suites pass: `native-usage-delivery.integration` and `native-usage-accounting` (46 tests), and the usage, accounting, receipt and authority cases in `native-session-executor.test.ts` (224 tests). Server typecheck passes. - **The live remote path is unproven.** No Daytona wave ran because the Daytona Runner image has not been rebuilt yet. The local Runner counterpart (#20517) passed restart-chaos L1, seed 20386, 4/4 (`w-20261110T104332-s20386`). ## Risks - **Upgrade safety.** Usage state saved by current master has no journaled restore and rebuilds as before. A receiver that predates this change replays a journaled restore as an ignored event, which is the behaviour on master. A restore that an older controller already acknowledged is not replayed, so that run waits for the closure timeout as it does today. - **One extra receipt per mid-turn restore**, only for ACPX and OpenCode and only while a turn is open. Nothing is added before `turn.start`: a restore with no open turn returns immediately. - **Codex and other providers are unaffected.** They do not use turn accounting. - No schema or persisted-format change. ## Model Used - Claude Opus 5.5 (Anthropic), model ID `claude-opus-5-5`, used through Claude Code with shell, file-edit and code-execution tools. ## Checklist - [x] I have included a thinking path that traces from project context to this change - [x] I have specified the model used (with version and capability details) - [x] I have checked ROADMAP.md and confirmed this PR does not duplicate planned core work - [x] I have searched GitHub for duplicate or related PRs and linked them above - [x] I have either (a) linked existing issues with `Fixes: #` / `Closes #` / `Refs #` OR (b) described the issue in-PR following the relevant issue template - [x] I have not referenced internal/instance-local Paperclip issues or links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip` URLs) - [x] My branch name describes the change (e.g. `docs/...`, `fix/...`) and contains no internal Paperclip ticket id or instance-derived details - [x] I have run tests locally and they pass - [x] I have added or updated tests where applicable - [x] I have updated relevant documentation to reflect my changes - [x] I have considered and documented any risks above - [x] All Paperclip CI gates are green - [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups - [x] I will address all Greptile and reviewer comments before requesting merge 🤖 Generated with [Claude Code](https://claude.com/claude-code) --------- Co-authored-by: Claude Opus 5.5 <noreply@anthropic.com> |
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DottaandClaude Opus 5.5
|
23fa37f5bb |
fix(recovery): treat a retired prepared remote epoch as nothing to recover (#20491)
## Thinking Path > - Paperclip is the open source app people use to manage AI agents for work > - A restart must never leave a task stuck: an interrupted run must resume on its own or have a working Retry > - When a graceful restart interrupts a remote-workspace run that is still preparing, the run keeps a `prepared` reference to its workspace epoch, and a preserve-without-replay hold blocks the task > - The unsaved-files reconciler then retires that epoch with `abandonUnverifiedRemoteWorkspaceEpoch` and writes a `paperclip.remote-workspace-abandoned-epoch.v1` receipt. The workspace content is the last committed save again > - Recovery never read that receipt. The held-preparation reconciler waited for a repair receipt that could never exist, and restore recovery refused the source as `source_binding_invalid`. The task stayed blocked, and a UI Retry returned 202 and started nothing > - This pull request adds one strict shared rule: an abandoned-epoch receipt for the run's exact prepared epoch and allocation means there is nothing to recover. Every recovery path now uses it > - The benefit is that the task resumes automatically from the last committed save after the restart, whichever recovery path owns the hold ## Linked Issues or Issue Description Refs #20072 (replay a preparation a restart interrupted), #20299 (storage outage waits). **What existing behavior does this improve?** Recovery of a remote-workspace run that a graceful restart interrupted during preparation, after its unsaved epoch was retired. **Subsystem affected** Server: recovery (held-preparation reconciler, workspace restore recovery, the workspace repair check). **Current behavior** These are Daytona R1 restart-chaos waves (Paperclip-sized workspace, `--storage s3`, K2 graceful restart at +110 s, during the ~730 MiB first save): - `w-20261110T052533-s8805` and `w-20261110T062703-s8805` (ST2 slow store), held-preparation path: both runs ended `interrupted` in `executionStage: preparing`. The reference was `{ state: "prepared", epoch: 1 }`, and the workspace had moved to `{ epoch: 2, location: null, dirty: false, writerRunId: null }` with an abandoned-epoch receipt for epoch 1. The `legacy_interrupted_preparation_hold` reconciler never settled the hold (`I2_settled` violations), because `isInterruptedNativePreparation` requires `hasVerifiedWorkspaceRepair`, and that check accepts only a `saved` reference. Grader: `R3:retry_no_new_run`. - `w-20261110T091639-s11936` (ST1 outage), restore-recovery path: the run also had `workspaceRestoreFailure: "restore_failed"` and `workspaceRestoreRecovery`. Restore recovery owns that hold. `inspectWorkspaceRecoverySource` threw `source_binding_invalid` / `workspace_reference_mismatch` with retry class `service_required`, and the hold says Retry "succeeds only after Paperclip is updated". Grader: `R3:retry_no_new_run`. **Proposed behavior** `isAbandonedPreparedRemoteWorkspace(db, run)` is true only when all of these hold: - The run has a `prepared` remote reference and no native workspace sync reference. - The workspace authority is at a later epoch, and the run is not its writer. - The workspace has an abandoned-epoch receipt for the same run, the same epoch, and the same lease, provider lease and remote cwd. That rule is used in three places: - `hasVerifiedWorkspaceRepair` (`workspace-recovery-receipt.ts`): the retired epoch counts as repaired. This covers held-preparation replay, the restore-failure check in `settleInterruptedNativeBootstrap`, the execution blocker, and explicit Retry admission. `verifiedWorkspaceRepairReceipt`, which returns a receipt id, is unchanged. - `inspectWorkspaceRecoverySource` (`workspace-recovery-source.ts`): the retired source is reported as `source_unavailable` / `use_alternative_strategy`, not as a binding failure that needs a service update. - `heldInterruptedPreparationWhere`: a restore-recovery hold is listed for the held-preparation reconciler only when the matching receipt exists (SQL pre-filter). The settle then re-checks the full rule in JS before it acts. **Reason and benefit** The retired epoch held only preparation files: the hold proof requires that no provider work started. Its unsaved files were already given up by the reconciler that wrote the receipt. Waiting for a repair, or for a service update, cannot finish. ## What Changed - New `server/src/services/remote-workspace-abandoned-preparation.ts`: `isAbandonedPreparedRemoteWorkspace` (the strict rule) and `abandonedPreparedRemoteWorkspaceExists` (its SQL pre-filter). - `workspace-recovery-receipt.ts`: `hasVerifiedWorkspaceRepair` also accepts the rule. - `workspace-recovery-source.ts`: a retired prepared source is `source_unavailable` / `use_alternative_strategy`. - `interrupted-preparation-hold-settlement.ts`: restore-recovery holds are listed only with a matching receipt. - `interrupted-preparation-hold-settle.test.ts`: held-preparation replay (before and after the first save committed); a restore-recovery hold in the exact shape saved by the previous build (`restore_failed`, `workspaceRestoreRecovery`, exhausted `source_binding_invalid`) that now settles and replays; inspection reporting `source_unavailable`; and the rule refusing a workspace still at the run's epoch, a run still the writer, a native sync reference, another run's receipt, or another allocation's receipt. Not changed: `run-completion.ts` and the graceful-drain path in `recovery.ts`. ## Verification - `cd server && npx vitest run src/__tests__/interrupted-preparation-hold-settle.test.ts src/services/task-retry.test.ts`: 101 pass. - Red before: with the three recovery files at master, 4 tests fail (held-preparation replay ×2, the restore-recovery replay, and the inspection result). Green after. - Neighbouring recovery suites: see the comment below. - `cd server && npx tsc --noEmit -p tsconfig.json`: pass. - Chaos rerun on a build with this change: see the comment below. ## Risks - Previous-release story (upgrade-safe run state): no persisted shape changes. Holds, run references and receipts written by the previous build are read as they are. The restore-recovery test uses the exact shape the previous build saved. A task already stuck in that state settles on the next reconciler pass after deploy. - The rule needs an exact receipt (run, epoch, lease, provider lease, cwd) and a later workspace epoch, so a real recovery is never skipped. Any mismatch keeps today's behavior. ## Model Used Claude Opus 5.5 (`claude-opus-5-5`), Anthropic, with tool use and code execution in Claude Code. ## Checklist - [x] I have included a thinking path that traces from project context to this change - [x] I have specified the model used (with version and capability details) - [x] I have checked ROADMAP.md and confirmed this PR does not duplicate planned core work - [x] I have searched GitHub for duplicate or related PRs and linked them above - [x] I have either (a) linked existing issues with `Fixes: #` / `Closes #` / `Refs #` OR (b) described the issue in-PR following the relevant issue template - [x] I have not referenced internal/instance-local Paperclip issues or links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip` URLs) - [x] My branch name describes the change (e.g. `docs/...`, `fix/...`) and contains no internal Paperclip ticket id or instance-derived details - [x] I have run tests locally and they pass - [x] I have added or updated tests where applicable - [x] I have updated relevant documentation to reflect my changes - [x] I have considered and documented any risks above - [ ] All Paperclip CI gates are green - [ ] Greptile is 5/5 with no open P2s, recommendations, or follow-ups - [x] I will address all Greptile and reviewer comments before requesting merge 🤖 Generated with [Claude Code](https://claude.com/claude-code) --------- Co-authored-by: Claude Opus 5.5 <noreply@anthropic.com> |
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DottaandClaude Opus 5.5
|
37808f2a4e |
fix(accounting): close a local-Runner turn completed across a session restore as a lower bound (#20517)
## Thinking Path > - Paperclip is the open source app people use to manage AI agents for work. > - Native runs record usage receipts, and accounting settles a run's charge once its final receipt is complete. > - ACPX Claude reports provisional zero usage until a turn ends, then one final report. > - A restart can stop the provider after the agent's finish call and before that final report. The restored Runner then resumes the session and reports the same turn completed with no complete report. > - The receipt stayed incomplete, so the accepted run waited for the 10-minute closure timeout and then settled as unpriced. Its spend was missing from company totals in the meantime. > - This pull request closes such a turn as a lower bound, the same way a turn the Runner fails as lost on restore is already closed. > - The benefit is that an accepted run settles right away with its observed usage and an honest lower-bound label. ## Linked Issues or Issue Description Refs #20484 (restart-chaos L1 contention follow-up). **What happened?** After #20484 fixed the database contention, restart-chaos L1 (`--seed 20386 --db-pressure 4`, codex and claude, K1) reached 4/4 tasks done. Each task still failed the T-oracle `company_spend_settled` with `pending_runs=1`. A replay on master with `--keep` (`w-20261110T100747-s20386`) reproduced it, and I read the kept database: - The pending run (`71f71d10`, ACPX Claude) succeeded and had its result accepted. Its usage had `accountingReceiptReady: false`, zero tokens, `costStatus: unpriced`, and no cost event. - Its only turn started before K1, and every usage report in it was provisional (`runDeltaComplete: false`). K1 struck right after the agent's `paperclip_finish` call (source seq 118), before the turn's final report. - On restart, recovery verified the local process stopped and resumed the session (`session.resumed`, seq 119). The restored Runner then reported the same turn `turn.completed` (seq 124) with no usage report. - The other Claude run in that wave lost its turn as `provider_turn_lost_on_restore`, ran a new turn live with full usage, and settled at once. **Expected behavior** An accepted run whose open turn's final report was lost with the provider process settles promptly. It records its observed usage as a lower bound, like a turn lost on restore. A complete report that does arrive after the restore is still used. **Steps to reproduce** `server/src/services/native-runtime/native-usage-accounting.test.ts > closes a turn that completed across a session restore without its final report, as a lower bound` uses the event sequence from the kept database. It fails on master because the snapshot stays incomplete. ## What Changed - `createNativeTurnAccounting` observes `session.resumed` and marks every open turn as restored. A terminal event for a restored turn without a complete report marks it lost. The snapshot then closes it as a lower bound (`accountingUsageLost`), through the existing lost-on-restore path. A new `turn.started` clears the mark. - A lost terminal turn keeps its identity in the snapshot, so the executor's terminal-turn match certifies the final checkpoint as complete. This came from review. - The native session executor includes `session.resumed` when it rebuilds turn state from the run's event log after a controller restart. - `doc/SPEC-implementation.md` documents the case next to the existing lost-on-restore rule. ## Verification - Red on master, green here: `native-usage-accounting.test.ts > closes a turn that completed across a session restore without its final report, as a lower bound`. It also checks that replaying the history twice gives the same snapshot. - Red on the first revision, green after the review fix: `native-session-executor.test.ts > certifies a turn completed across a session restore as a lower bound (history replay: false|true)`. It drives the restored sequence through executor completion, both live and from the event history. - New guards that pass before and after: - `keeps a restored turn's own final report when it arrives after the restore`: a complete report after resume is used, not marked lost. - `keeps an incomplete turn pending when the session resumed before it started`. - The existing `keeps an incomplete provider report pending instead of trusting placeholder zeroes` still passes. - Related suites pass: `native-usage-accounting`, `native-usage-delivery.integration`, `closed-native-receipt-accounting` (107 tests), and the usage, accounting and receipt cases in `native-session-executor.test.ts` (151 tests). Server typecheck passes. - Live, restart-chaos L1, seed 20386, `--db-pressure 4`, codex and claude, K1, head `a6e521f06c`, clean worktree: `w-20261110T104332-s20386` passed 4/4. R1–R6 and the T-oracle passed for every task. `company_spend_settled` reported `pending_runs=0` (summary 85.30823 = cost events 85.30823), with zero serialization failures under about 397k pressure updates. On master the same seed failed every task on `company_spend_settled pending_runs=1` (`w-20261110T100747-s20386`, among others). ## Risks - A restored turn without a complete report now settles at its observed usage, flagged as a lower bound, instead of after 10 minutes as "closure timed out". In both cases the final report never arrived. The money recorded is the same observed usage; only the timing and the provenance label differ. - Scope: local Runner only. The executor fallback-recorder path sees `session.resumed`. The producer-owned delivery path for remote runners (`native-usage-delivery.ts`, `isNativeUsageAccountingEvent`) still drops it, so a remote ACPX/OpenCode turn restored mid-turn still waits for the closure timeout. That is a follow-up. - No schema or persisted-format change. ## Model Used - Claude Opus 5.5 (Anthropic), model ID `claude-opus-5-5`, used through Claude Code with shell, file-edit and code-execution tools. ## Checklist - [x] I have included a thinking path that traces from project context to this change - [x] I have specified the model used (with version and capability details) - [x] I have checked ROADMAP.md and confirmed this PR does not duplicate planned core work - [x] I have searched GitHub for duplicate or related PRs and linked them above - [x] I have either (a) linked existing issues with `Fixes: #` / `Closes #` / `Refs #` OR (b) described the issue in-PR following the relevant issue template - [x] I have not referenced internal/instance-local Paperclip issues or links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip` URLs) - [x] My branch name describes the change (e.g. `docs/...`, `fix/...`) and contains no internal Paperclip ticket id or instance-derived details - [x] I have run tests locally and they pass - [x] I have added or updated tests where applicable - [x] I have updated relevant documentation to reflect my changes - [x] I have considered and documented any risks above - [x] All Paperclip CI gates are green - [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups - [x] I will address all Greptile and reviewer comments before requesting merge 🤖 Generated with [Claude Code](https://claude.com/claude-code) --------- Co-authored-by: Claude Opus 5.5 <noreply@anthropic.com> |
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DottaandClaude
|
8b3348c6ba |
fix(runner): classify Claude's rejected selected model as an unavailable model (#20513)
## Thinking Path
> - Paperclip is the open source app people use to manage AI agents for
work
> - Native runner agents on the Claude (ACPX) provider run with the
model the user saves on the agent
> - When the provider cannot run that model, Paperclip should classify
the run as `native_provider_model_rejected`, ask the user to choose a
model, and let Retry finish the task
> - Claude Code accepts an unknown model at session start and reports it
only on the first turn, as an AIR `request` failure with a fixed title.
The runner reported it as an unknown provider failure
> - So the run failed as `native_provider_terminal_failed`, and the task
stopped with `provider_effect_inventory_unavailable` ("Automatic
recovery stopped. Recorded work is preserved…") without naming the model
> - This pull request classifies that Claude title as an unavailable
model, the category the native runtime already turns into
`native_provider_model_rejected`
> - The benefit is that an unknown Claude model asks for a model choice
and names it, as Codex does after #20488
## Linked Issues or Issue Description
**What happened?**
Config wave `w-20261110T094430-s207-cf` on `master` (
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DottaandClaude Opus 5.5
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57def75d01 |
fix(run-log): wait for a just-written journal head instead of failing the claim (#20509)
## Thinking Path > - Paperclip is the open source app people use to manage AI agents for work > - In cloud mode, run logs use the `s3_segments` store: an object byte journal whose `head.json` names the current writer > - Each run start (and each resume after a restart) claims the journal: it reads the head and publishes the next generation with a conditional write > - On an S3-compatible store with read-after-write lag, the head that the previous generation just published can read as `NoSuchKey` > - The claim then tries to create a new head, the store rejects the create because the head exists, and the run fails with `object_journal_writer_conflict` > - This pull request makes the claim wait for the head to become readable when its read said "missing" but the store says it exists > - The benefit is that a run that resumes right after a restart survives a store that shows new objects a few seconds late ## Linked Issues or Issue Description **What happened?** In restart-chaos wave w-20261110T085328-s701 (local, A1/C1, K1/K2, `--storage s3 --storage-faults ST7`), 3 of 4 tasks failed R3 with `retry_needed (adapter_failed)`. Every failed run has `failureCause: object_journal_writer_conflict` and the error "The output journal is owned by another writer" at `object-byte-journal.ts` `publish` from `object-run-log-store.ts` `begin`. All six failures happened in the ST7 window (GET/HEAD of a just-written key answers 404 `NoSuchKey` for 24 s), right after back-to-back K1 restarts. The proxy lagged 34 `GetObject` reads. **Expected behavior** A resuming run claims the run log and continues. A store that is slow to show a new object must not look like another writer. **Steps to reproduce** Claim a journal, then claim it again while the store answers `NoSuchKey` for `head.json` for a short time. The second claim fails with `ObjectJournalConflictError`. ## What Changed - `server/src/services/object-byte-journal.ts`: `claim()` reads the head and claims from it. When the head read as missing and the create fails as a conflict, it waits with backoff (250 ms doubling to 4 s, up to 60 s) and claims again from the head it then reads. A conflict on a head it could read, or a deletion tombstone, still fails at once. - `server/src/services/object-byte-journal.test.ts`: a new test hides a just-written head for three reads. Before this change the second claim fails with "The output journal is owned by another writer". After it, the claim gets the next generation and keeps the committed bytes. ## Verification - `cd server && npx vitest run src/services/object-byte-journal.test.ts src/services/object-run-log-store-tail-read.test.ts src/services/object-run-log-store.test.ts src/services/run-log-store-cancellation.test.ts src/services/run-log-store.test.ts`: 83 pass. The new test fails before the fix and passes after. - `cd server && npx tsc --noEmit -p tsconfig.json` passes. - Live: an ST7 rerun on a build with this fix follows in a comment. ## Risks - A claim on a journal that a truly concurrent first writer just created waits up to 60 s for that head and then claims after it. The caller already asserted execution authority, so it is the owner; it would claim after that head anyway once the head is readable. - A store that never shows the head makes the claim fail after 60 s instead of at once. ## Model Used - Claude Opus 5.5 (`claude-opus-5-5`), Anthropic, with tool use and code execution in Claude Code. ## Checklist - [x] I have included a thinking path that traces from project context to this change - [x] I have specified the model used (with version and capability details) - [x] I have checked ROADMAP.md and confirmed this PR does not duplicate planned core work - [x] I have searched GitHub for duplicate or related PRs and linked them above - [x] I have either (a) linked existing issues with `Fixes: #` / `Closes #` / `Refs #` OR (b) described the issue in-PR following the relevant issue template - [x] I have not referenced internal/instance-local Paperclip issues or links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip` URLs) - [x] My branch name describes the change (e.g. `docs/...`, `fix/...`) and contains no internal Paperclip ticket id or instance-derived details - [x] I have run tests locally and they pass - [x] I have added or updated tests where applicable - [x] I have updated relevant documentation to reflect my changes - [x] I have considered and documented any risks above - [ ] All Paperclip CI gates are green - [ ] Greptile is 5/5 with no open P2s, recommendations, or follow-ups - [x] I will address all Greptile and reviewer comments before requesting merge 🤖 Generated with [Claude Code](https://claude.com/claude-code) --------- Co-authored-by: Claude Opus 5.5 <noreply@anthropic.com> |
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DottaandClaude
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dc9971bdb8 |
fix(native): keep another server's orphan sweep off a lease its owner took back (#20508)
## Thinking Path > - Paperclip is the open source app people use to manage AI agents for work > - A native run holds an executor lease on its `native_run_finalizations` row. #20474 lets the same owner take back its own lease when the lease lapsed only because the host slept. > - That take-back is safe only if every other actor that acts on a lapsed lease records its action under the coordinator row lock first. The plan `doc/plans/2026-11-09-explicit-native-lease-claim-tokens.md` lists the actors that do not. Gap 2 is another server's orphan sweep. > - The sweep reads the lease as lapsed. Later it writes the ownership-unverified marker on the run, without the coordinator lock and without a new check of the lease. If the owner wakes and takes its lease back between the read and the write, a healthy run gets the marker. > - The board then shows "automatic recovery is blocked" on a run that works. After the next host sleep, the owner cannot take its lease back, so the turn is interrupted and the user must click Retry. The owner's rule is that a task interrupted by sleep must resume by itself. > - This pull request makes the sweep write its marker under the coordinator row lock, and only while no executor lease on the run is live. > - The benefit is that exactly one side wins: the sweep marks a run whose owner did not come back, and it leaves alone a run whose owner took its lease back. ## Linked Issues or Issue Description Refs #20474 **What happened?** Two servers share one database. Server A's host sleeps, so the executor lease of its native run lapses. Server B's orphan sweep reads the lapsed lease. Server A wakes and takes its lease back (#20474). Server B then writes `native_execution_ownership_unverified` on the run that A still owns. **What did you expect?** Server B writes the marker only if the lease is still lapsed when it writes. One side wins. **Steps to reproduce** `server/src/__tests__/heartbeat-native-orphan-sweep-lease-race.test.ts` holds the owner's take-back open, runs the real `heartbeatService(db).reapOrphanedRuns()` until its write waits on a lock, then commits the take-back. Before this change the run ends with `errorCode: native_execution_ownership_unverified` and the owner's next take-back fails with `native_session_lease_lost`. ## What Changed - `setRunStatusFromLive` (`server/src/services/heartbeat/run-lifecycle.ts`) has a new option `onlyWhileNativeLeaseLapsed`. It locks the coordinator row first. This is the same order that `lockNativeExecutionLeaseForReacquire` uses. The UPDATE then requires that no executor lease on the run is live. - `markNativeOwnershipUnverified` (`server/src/services/heartbeat/recovery.ts`) takes `leaseLapsed`. The orphan sweep in `recoverActiveExecutions` sets it when it read the lease as lapsed or unset. Other callers do not change. They keep the same call shape. - A new regression test, red before the fix: `server/src/__tests__/heartbeat-native-orphan-sweep-lease-race.test.ts`. It also checks that the sweep still marks a lapsed run whose owner did not come back, and that the late owner stays fenced out. - `doc/plans/2026-11-09-explicit-native-lease-claim-tokens.md`: gap 2 is marked closed without the epoch design. ## Verification - `cd server && pnpm exec vitest run src/__tests__/heartbeat-native-orphan-sweep-lease-race.test.ts` — red on `origin/master` (the run keeps the marker), green with this change. - `cd server && pnpm exec vitest run src/__tests__/heartbeat-native-orphan-sweep-lease-race.test.ts src/services/heartbeat/recovery.test.ts src/services/native-runtime/native-execution-lease-reacquire.test.ts src/__tests__/heartbeat-status-preserving-telemetry.test.ts` — 129 passed. - `cd server && pnpm exec tsc --noEmit -p tsconfig.json` — clean. - Restart-chaos time-fault wave on this branch: see the wave comment below. ## Risks - Low risk. Only the orphan sweep's marker write changes, and only for a run whose lease it read as lapsed. The sweep now takes the coordinator row lock before the run row. The owner's take-back uses the same order, so the two cannot deadlock. - If the owner took the lease back, the sweep now writes nothing and appends no event. The next sweep sees a live lease and defers, as before. - The other gaps in the plan (workspace finalization, shared-workspace holder detection, board copyback confirmation) do not change. ## Model Used - Claude Opus 5.5 (`claude-opus-5-5`), Anthropic, via Claude Code with tool use (shell, file edits, test runs). ## Checklist - [x] I have included a thinking path that traces from project context to this change - [x] I have specified the model used (with version and capability details) - [x] I have checked ROADMAP.md and confirmed this PR does not duplicate planned core work - [x] I have searched GitHub for duplicate or related PRs and linked them above - [x] I have either (a) linked existing issues with `Fixes: #` / `Closes #` / `Refs #` OR (b) described the issue in-PR following the relevant issue template - [x] I have not referenced internal/instance-local Paperclip issues or links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip` URLs) - [x] My branch name describes the change (e.g. `docs/...`, `fix/...`) and contains no internal Paperclip ticket id or instance-derived details - [x] I have run tests locally and they pass - [x] I have added or updated tests where applicable - [x] I have updated relevant documentation to reflect my changes - [x] I have considered and documented any risks above - [ ] All Paperclip CI gates are green - [ ] Greptile is 5/5 with no open P2s, recommendations, or follow-ups - [x] I will address all Greptile and reviewer comments before requesting merge 🤖 Generated with [Claude Code](https://claude.com/claude-code) Co-authored-by: Claude <noreply@anthropic.com> |
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DottaandClaude
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a09093a5c5 |
fix(native): resume a run whose turn.start a restart cut off before Codex created the turn (#20507)
## Thinking Path > - Paperclip is the open source app people use to manage AI agents for work > - A native Codex run sends `turn.start` to its runner, and the runner sends `turn/start` to Codex. The runner marks the start "ambiguous" before it sends the request > - A control-plane restart can kill the runner and Codex while that request is in flight. After the restart, neither journal says whether Codex created the turn, and the resumed thread has no active turn > - The restored runner then failed closed on every same-run resume with "cannot safely recover an ambiguous Codex turn start without an active replacement turn". The answer never reached the agent > - The next run on the task was refused at the runner-state fence (`prior_owner_terminal_state_indeterminate; retirement_refused=journal_commands_unsettled(turn.start.failed)`) before it asked for a runner. Retry after that run then waited forever on `process_identity_missing` for a process that never existed > - This pull request lets the runner prove from Codex's own thread history that the start never created a turn, and then resume and start the turn once. It also lets Retry continue after a run that the runner-state fence refused before launch > - The benefit is that a turn start cut off by a restart continues by itself when Codex never saw it, and a person's Retry is no longer a dead end ## Linked Issues or Issue Description **What happened?** Local restart-chaos wave `w-20261110T033426-s108`. Command: `--env local --adapters codex --workloads Q1,Q2 --faults K1 --triggers answered --tasks 4 --concurrency 2 --seed 108`. Task t03 (Q2): the answer run `92a57f50` resumed after the first restart. A second K1 restart landed 0.25 s after `session.resumed`, while its `turn.start` was in flight. Each same-run resume then failed with `PRP command session.snapshot failed: cannot safely recover an ambiguous Codex turn start without an active replacement turn`. When the prerequisite finished, the next run `0e6aa9d1` failed before launch with `runner_state_identity_mismatch: prior_owner_terminal_state_indeterminate; retirement_refused=journal_commands_unsettled(turn.start.failed)`. The accepted Retry (202) never created a run: the task stayed on `retryWait.reason=process_identity_missing` until the wave timed out (`R3:retry_no_new_run`). **Expected behavior** If Codex never created the turn, the run resumes and starts it once by itself. If that cannot be proven, a person's Retry starts a new run instead of waiting forever. **Steps to reproduce** 1. Run the wave command above on master. 2. Or run `pnpm --filter @paperclipai/paperclip-runner exec vitest run src/live/runnerd-codex-transport-cut-turn-start.test.ts` on master (case "before" fails with the wave error). ## What Changed - Runner (`codex_provider.rs`, `provider_backend.rs`): when the restored provider state has an ambiguous turn start, no active turn before the loss, and the resumed thread has no active turn, the runner reads the newest turn of the thread (`thread/turns/list`, limit 1, metadata only, the same request `read_thread` already sends). If there is no turn, or the newest turn is one Paperclip already settled, Codex never created the turn. The runner clears the ambiguity, emits a `harness.diagnostic` with code `ambiguous_turn_start_not_created`, and restores an idle session. The old `turn.start` stays `execution_indeterminate` and is never executed again. The same-run resume then starts the run's turn once, through the existing "recovered session without an active turn" path. - Any other history (a turn Paperclip never settled, an in-progress turn, an incomplete page, a non-Codex provider) keeps today's fail-closed error. The probe runs only on this recovery path. The normal turn path does no new work before `turn.start`. - Server (`native-local-process-stop.ts`): `nativeRunNeverLaunched` also accepts a failed native run whose error is the runner-state fence refusal `runner_state_identity_mismatch: prior_owner_*` (or `legacy_prior_owner_*`). The executor throws it only while it migrates another run's saved state, before it requests a launch. The existing evidence check still applies: any launch request, identity record, `adapter.invoke` or runner event keeps the run held. Other runner-state errors (for example `authority_indeterminate`) stay held. - Fake Codex (`fake-codex-app-server.rs`): keeps the thread's turn history in a `<state-file>.turns` sidecar, so `thread/turns/list` returns history like real Codex (newest first, honours `limit`). New `--hang-turn-start <file>` holds `turn/start` "before" or "after" the thread records the turn, to model a kill in flight. - Tests: - New real-runnerd test `runnerd-codex-transport-cut-turn-start.test.ts`. A real runner and fake Codex start a turn; both processes are killed while `turn/start` is in flight. "before": the resumed run completes, the journal holds the old `turn.start` (`execution_indeterminate`) and one new completed `turn.start` with the same task text, and Codex saw exactly one more `turn/start`. "after": recovery still fails closed and no new `turn/start` is sent. - Rust: `ambiguous_turn_start_that_never_created_a_turn_recovers_and_starts_once` and `ambiguous_turn_start_that_created_an_unsettled_turn_still_fails_closed`. Both rewrite saved provider state the way a master runner wrote it, so they also cover state saved before this change. - `explicit-native-continuation.test.ts`: five new rows for the runner-state fence. Admitted: refused before launch (with and without a coordinator). Held on `process_identity_missing`: refused after a launch request, refused after a runner event, and a run that failed its own `authority_indeterminate` check. - `docs/durable-recovery.md`: describes both behaviours. ## Verification - Red/green, real runnerd: on master (the staged master runnerd), `runnerd-codex-transport-cut-turn-start.test.ts` "before" fails with `PRP command runner.drain failed: ... cannot safely recover an ambiguous Codex turn start without an active replacement turn`, the wave error. With this change, both cases pass. - Red/green, Rust: without the `provider_backend.rs` change, `cargo test -p paperclip-runner-core --test codex_provider ambiguous_turn_start_that` fails the "never created" test. With it, both pass. The full `cargo test -p paperclip-runner-core` passes. - Red/green, server: without the `native-local-process-stop.ts` change, the two "refused at the prior-owner runner-state fence" rows fail with `process_identity_missing`. With it, all 14 rows pass. - Related suites pass: 11 Runner transport files, 419 tests (`runnerd-codex-transport`, `-attachment-recovery`, `-cold-restore`, `-warm-attachment`, `-release-resume`, `-cut-attach`, `-cut-turn-start`, `-settlement`, `-suspension`, `runnerd-restart-continuation`, `runnerd-saved-continuation`); server `explicit-native-continuation`, `quarantined-task-retry` and `issue-confirm-run-stopped-routes`, 3 files, 470 tests; full `cargo test -p paperclip-runner-core`. - `pnpm --filter @paperclipai/paperclip-runner exec tsc --noEmit` and server `tsc --noEmit` pass. - Pack `contractDigest` is unchanged: `sha256:3164357d…` before and after (`scripts/contracts/contract-fingerprints.mjs`). - Live proof: the wave command above on this branch. Results follow in a comment. **No duplicate provider work.** The runner starts a new turn only when Codex's own history proves the cut-off start created nothing. The old command is never executed again (the runner refuses an `indeterminate` command). A recorded turn that Paperclip never settled keeps the run failed closed. ## Risks - Low-medium risk. The runner change runs only while it restores a session whose saved state has an ambiguous turn start and no active turn. Before this change, that run could never continue. - The proof relies on Codex recording a turn in the thread before it runs anything. If Codex accepted the request but died before it wrote the turn, the runner treats the start as not created and starts the turn once. Codex writes the user turn to the thread when it starts the turn, before it asks the model for output, so no model output or tool call is expected without a recorded turn. - If the thread's newest turn is not in the runner's settled set (for example after a provider identity epoch rollover forgot older identities), the runner keeps failing closed, as today. - **Open decision (not changed here):** when Codex did record the cut-off turn, it may have done work. This pull request keeps the run failed closed and does not replay or adopt that turn. Continuing is a person's decision through Retry or a new message. - The server change trusts the executor's own error text `runner_state_identity_mismatch: prior_owner_*`, together with the absence of every launch and runner event. A run that requested a launch keeps every stop proof. - **Runner release:** the pack `contractDigest` does not change. Local runners use the runnerd built with the app, so the fix applies with this release. - Not covered: the related `authority_indeterminate` variant in the same wave (t04, Q1) is a separate cause; its Retry already worked in that wave. > For core feature work, check [`ROADMAP.md`](ROADMAP.md) first and discuss it in `#dev` before opening the PR. Feature PRs that overlap with planned core work may need to be redirected — check the roadmap first. See `CONTRIBUTING.md`. ## Model Used - Claude Opus 5.5 (`claude-opus-5-5`), via Claude Code with tool use (shell, file edits, test execution). ## Checklist - [x] I have included a thinking path that traces from project context to this change - [x] I have specified the model used (with version and capability details) - [x] I have checked ROADMAP.md and confirmed this PR does not duplicate planned core work - [x] I have searched GitHub for duplicate or related PRs and linked them above - [x] I have either (a) linked existing issues with `Fixes: #` / `Closes #` / `Refs #` OR (b) described the issue in-PR following the relevant issue template - [x] I have not referenced internal/instance-local Paperclip issues or links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip` URLs) - [x] My branch name describes the change (e.g. `docs/...`, `fix/...`) and contains no internal Paperclip ticket id or instance-derived details - [x] I have run tests locally and they pass - [x] I have added or updated tests where applicable - [x] I have updated relevant documentation to reflect my changes - [x] I have considered and documented any risks above - [ ] All Paperclip CI gates are green - [ ] Greptile is 5/5 with no open P2s, recommendations, or follow-ups - [x] I will address all Greptile and reviewer comments before requesting merge Refs #20477, #20482 🤖 Generated with [Claude Code](https://claude.com/claude-code) --------- Co-authored-by: Claude <noreply@anthropic.com> |
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DottaandClaude Opus 5.5
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0b20ea6fe9 |
fix(accounting): keep budget admission and usage handoff alive under run-row updates (#20484)
## Thinking Path > - Paperclip is the open source app people use to manage AI agents for work. > - Before a run starts provider work, Paperclip reserves its budget and binds a usage recorder. Both write the run's `heartbeat_runs` row. > - Run-log appends, output progress and lifecycle events update that same row while the run prepares and streams. > - #20385 fixed this race for the standalone usage-receipt write only. Budget admission and the recorder handoff still take a repeatable-read snapshot before they lock the run row. > - Each concurrent row update makes that snapshot stale. Four retries run out with SQLSTATE `40001`, and the run ends `adapter_failed` with raw SQL as its error. > - This pull request applies the #20385 pattern (READ COMMITTED under the existing locks) to those writers and to the final dispatch gate. It also gives exhausted retries a bounded cause. > - The benefit is that busy runs start and account normally, and a remaining failure names its cause. ## Linked Issues or Issue Description Refs #20385. Builds on #20483 (bounded failure cause and `withoutSqlStatementText`). **What happened?** The restart-chaos L1 workload with `--db-pressure 4` (harness writers that update each running run row, one row per statement, like a fast stream) failed on master. In one wave, 0 of 4 tasks passed. Every first run failed in `reserveRunBudget` before spawn. In an earlier wave, a run failed in `createRunUsageRecorder`. The stack in both cases is `could not serialize access due to concurrent update` (`40001`) on the run-row `FOR UPDATE`. The board `runError` showed the full `select ... from heartbeat_runs ... for update` statement. The server log line `heartbeat execution failed` dropped the database cause. Realism: the harness writers are synthetic, but the product has the same writers on the same row. `appendHeartbeatRunEvent` increments `next_event_seq`, output progress updates `last_output_*`, and lifecycle events land while a run prepares. On a hosted database the window between snapshot and row lock is wider than locally, so a busy run reaches the same race without the harness. **Expected behavior** Budget admission and the recorder handoff commit while other writers update the run row. Budget invariants stay intact: one reservation per run, a reached hard stop still refuses work, and committed holds count against later admissions. Usage receipts are journaled once. If retries still run out, the run shows a bounded cause without SQL, and the server log records the SQLSTATE. **Steps to reproduce** Run `server/src/services/run-accounting-contention.test.ts` against the parent commit. The deterministic cases commit a real `appendHeartbeatRunEvent` after the writer's transaction checks the company and before it locks the run. Six of the eight cases fail with `40001`. ## What Changed - `reserveRunBudget` runs at READ COMMITTED. All mutable reads follow the shared admission fences, the agent `FOR SHARE` lock and the run-row `FOR UPDATE`. Exposure stays one SQL statement (hold-to-ledger atomic). The `budget_reservations_run_idx` unique index and the run lock still prevent a second hold. - The final dispatch gate's accounting phase (`dispatchResolvedInteractionIfCurrent` through `withIssueThenRunLocks` in `run-dispatch/adapters/postgres.ts`) runs at READ COMMITTED. Its ownership phase already read the same staleness facts at READ COMMITTED under the same issue and run locks. Retry promotion and stale-run cancellation keep their repeatable-read snapshot. The first L1 proof wave found this writer exhausting `40001` once the other three were fixed. - `createRunUsageRecorder` runs its receipt-source handoff and its capture-failure fence at READ COMMITTED. Both lock the run row first, the same as `persistUsageReceipt` after #20385. - `withOperationAccountingTransaction` raises `AccountingContentionError` when retries run out. It has a bounded message, `code` keeps the SQLSTATE (`40001`/`40P01`), `cause` keeps the database error, and a warning logs both. - `failRun` shows that bounded message. The code stays `adapter_failed`, so chat and recovery retry paths still apply. #20483's `failureCause` records `40001`. All other SQL text handling comes from #20483 (`withoutSqlStatementText`), unchanged here. - `doc/DATABASE.md` documents the isolation choice and the failure contract. ### Inventory of REPEATABLE READ / SERIALIZABLE transactions that write run-scoped rows | Writer | Status | Notes | | --- | --- | --- | | `persistUsageReceipt` (`usage-receipts.ts`) | Fixed in #20385 | READ COMMITTED under the run lock. | | `reserveRunBudget` (`budget-reservations.ts`) | Fixed here | Seen in waves (`budget-reservations.ts:90`). | | `createRunUsageRecorder` handoff (`usage-receipts.ts`) | Fixed here | Seen in waves (`usage-receipts.ts:572`). | | `createRunUsageRecorder` capture-failure fence (`persistFailure`) | Fixed here | Same shape: run lock first, runs mid-stream. | | Native finalizer `claimCoordinator` (`native-run-finalizer.ts`) | Safe | A default READ COMMITTED transaction with `FOR UPDATE` on the coordinator row. It cannot raise `40001`. The wave errors there were `native_finalization_missing`, a symptom of the failed reservation (no coordinator existed yet). | | Final dispatch gate, accounting phase (`dispatchResolvedInteractionIfCurrent`) | Fixed here | Seen in proof wave `w-20261110T075857-s20386` (runs `140ddb10`, `c028c6c4`, `fea0ee5a`). Its ownership phase already used READ COMMITTED under the same locks with the same staleness reads. | | Retry promotion and stale-run cancellation (`promoteOrCancelDueRetry`, `cancelStaleQueuedRun`, same lock helper) | Follow-up | Kept at repeatable read: `loadGateFacts` combines wakes, comments, dependencies, tree holds and repair state in one decision. They act on queued or scheduled runs, not streaming ones. Not seen failing in waves. If retries run out, they now fail with the bounded cause. | | Run settlement `accountRunCost` (`run-cost-accounting.ts`) | Follow-up | Seen with `40001` in a wave log. Leaves the run pending; `reconcileRunCosts` retries it durably. Multi-aggregate (coordinator, receipts, images, closure). | | Tool cost events (`paperclip-runner-tool-authority.ts`, `costs.ts`) | Safe | Insert `cost_events` only; the run row is referenced, not locked or updated. | | Budget enforcement and evaluation (`budgets.ts`), billing reconciliation, accounting-integrity repair | Safe | Lock policy, invoice or company rows, not a streaming run row. Run reads are plain selects. | | Browser use, decisions, prompt-injection, fast responses | Safe | Write their own invocation/reservation rows, not `heartbeat_runs`. | | Read-only RR snapshots (`withAccountingReadSnapshot`, idle-sleep, tool gateway, customer success, `routes/decisions.ts`) | Safe | Read only, or no run-scoped writes. | ## Verification - Red on the parent commit, green on this branch: `server/src/services/run-accounting-contention.test.ts` (real embedded PostgreSQL). - `reserveRunBudget > reserves once when run events commit between its company check and its run lock` (red: `40001`) - `reserveRunBudget > reserves every run while back-to-back writers update the run row` (red: `40001`) - `reserveRunBudget > counts every committed hold, so successive admissions never exceed the budget` (red) - `reserveRunBudget > still refuses a run once the hard stop is reached` (red: `40001` instead of `409`) - `createRunUsageRecorder > binds its receipt source when run events commit between its company check and its run lock` (red: `40001`; green asserts the spooled receipt is journaled exactly once) - `createRunUsageRecorder > binds while back-to-back writers update the run row` (red: `40001`) - `reserveRunBudget > never creates a second reservation for one run when two dispatches race` (invariant; passes before and after) - `final dispatch gate > admits and hands off a reserved run when run events commit between its company check and its run lock` (red: `AccountingContentionError` after 4 × `40001`) - `createRunUsageRecorder > persists its capture-failure fence once when run events commit between its company check and its run lock` - `final dispatch gate > admits while back-to-back writers update the run row` (red: `40001`) - `exhausted retries > fail with a bounded, SQL-free cause that keeps the SQLSTATE` (new contract) - `run-completion.test.ts > saves a bounded cause and keeps the retryable generic code when accounting retries are exhausted` (saved code, message and `failureCause`, and log fields, through `failRun`) - Related suites pass: `usage-receipts-read`, `admission-independent-of-cleanup`, `budget-live-attempts`, `idle-accounting-work`, `budget-enforcement-scoping`, `closed-native-receipt-accounting`, `budget-evaluation-work`, `run-dispatch/adapters/postgres`, `heartbeat/run-completion` (all 126 run-completion cases pass; its `afterAll` embedded-PostgreSQL teardown exceeded 30 s on this loaded host, the known local flake). - `pnpm --filter @paperclipai/server typecheck` passes. - Latency of `reserveRunBudget` on the normal path (no contention, embedded PostgreSQL, 350 measured reservations per run, 3 runs each): before p50 14.7 / 15.0 / 18.6 ms, p95 25.6 / 31.4 / 39.4 ms; after p50 14.2 / 14.0 / 16.6 ms, p95 29.7 / 24.0 / 29.3 ms. No added latency: the statements are the same, only the isolation level changes. Under contention it removes the retry backoff. - Live restart-chaos L1 waves (`--seed 20386 --db-pressure 4`, codex and claude, K1): - Master before this change: `w-20261110T050818-s20386`, 0/4. Every first run failed in `reserveRunBudget` with `40001`. - Head `90530789b0` (first three writers fixed): `w-20261110T075857-s20386`, 2/4. Both codex tasks passed. Both claude failures (t02, t03) trace to the dispatch gate, now fixed. Those runs already showed the bounded cause, with no SQL on the board. The failure was logged with `sqlState` 40001. No `reserveRunBudget` or recorder `40001` remained. - Head `d5ed21926f` (dispatch gate fixed): `w-20261110T090531-s20386`. All 4 tasks reached done with no retry and R1–R6 passed. There were no failed runs and zero `40001` in the server log, under 310k pressure updates. Each task still failed the T-oracle `company_spend_settled` with `pending_runs=1`. That pending run is t02's continuation run `601ae80a`, cancelled before provider work as `issue_terminal_status`, whose accounting debt was not yet settled when graded about 15 s later. It is not a contention failure. Caveat: I edited the worktree during this wave (`worktree_changed_mid_wave`), so a clean wave on the final head follows. - Final head `9f1c480717`, clean worktree: `w-20261110T094417-s20386`. All 4 tasks reached done with no retry, and R1–R6 passed for each. There were no failed runs and zero serialization failures in the server log, under about 523k pressure updates. Each task still fails only the T-oracle `company_spend_settled` (`pending_runs=1`). It is the same cancelled pre-provider continuation run (`issue_terminal_status`), whose accounting debt was still unsettled at grading. That is a separate settlement-timing follow-up, not database contention. Master was 0/4 on the same seed. ## Risks - READ COMMITTED gives each statement its own snapshot. Admission reads policy, scope and exposure in separate statements. The shared company/project fences and the agent share lock exclude concurrent pause and policy edits, and exposure stays one statement, so each read is at least as fresh as the old snapshot. - Concurrent admissions of different runs stay best-effort, as `doc/SPEC-implementation.md` already states ("concurrent starts can exceed the same observed balance"). This change does not widen that window: each statement snapshot is newer than the old transaction snapshot. It does not add a company mutex. - A run that fails after exhausted retries now records `accounting_contention` instead of `adapter_failed`. Retry rules that key on `adapter_failed` spawn-like messages did not match this failure before, so no automatic retry changes. - No schema, migration or persisted-format change. ## Model Used - Claude Opus 5.5 (Anthropic), model ID `claude-opus-5-5`, used through Claude Code with shell, file-edit and code-execution tools. ## Checklist - [x] I have included a thinking path that traces from project context to this change - [x] I have specified the model used (with version and capability details) - [x] I have checked ROADMAP.md and confirmed this PR does not duplicate planned core work - [x] I have searched GitHub for duplicate or related PRs and linked them above - [x] I have either (a) linked existing issues with `Fixes: #` / `Closes #` / `Refs #` OR (b) described the issue in-PR following the relevant issue template - [x] I have not referenced internal/instance-local Paperclip issues or links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip` URLs) - [x] My branch name describes the change (e.g. `docs/...`, `fix/...`) and contains no internal Paperclip ticket id or instance-derived details - [x] I have run tests locally and they pass - [x] I have added or updated tests where applicable - [x] I have updated relevant documentation to reflect my changes - [x] I have considered and documented any risks above - [x] All Paperclip CI gates are green - [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups - [x] I will address all Greptile and reviewer comments before requesting merge 🤖 Generated with [Claude Code](https://claude.com/claude-code) --------- Co-authored-by: Claude Opus 5.5 <noreply@anthropic.com> |
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DottaandClaude
|
82abb3ea04 |
fix(native): classify a Codex API-key unknown model as a model rejection (#20488)
## Thinking Path
> - Paperclip is the open source app people use to manage AI agents for
work
> - Native runner agents run on a provider (here Codex) with a model the
user saves on the agent
> - When the provider rejects that model, Paperclip should classify the
run as `native_provider_model_rejected`, ask the user to choose a model,
and let Retry finish the task
> - Paperclip recognized only the ChatGPT-account rejection (a 400 JSON
envelope). With API-key auth, Codex returns a different terminal error
for an unknown model
> - So the run failed as a generic `adapter_failed` ("Native session
failed"), and recovery opened a reconciliation incident ("Recovery
needed") for a turn that never did any work
> - This pull request recognizes the real API-key shape, bound to the
configured model, and names the rejected model on the task
> - The benefit is that the task asks for a model choice instead of a
reconciliation, and Retry completes the task after the user picks a
valid model
## Linked Issues or Issue Description
**What happened?**
The restart-chaos config fault CF3 `model_id` saves a Codex agent with
the model `chaos-missing-model-<nonce>`. The run stays "running" for
about 60 seconds, then fails with `errorCode: adapter_failed`, "Native
session failed". The task shows "Recovery needed", cause
`native_continuation_requires_reconciliation`. The grader fails as
`CF3/model_id:actionable_message` (waves `w-20261110T061914-s206-cf` t01
and `w-20261110T053831-s205-cf` t02).
Root cause: the wave runs Codex with an OpenAI API key. I drove the
bundled `codex app-server` (0.160.0) directly with an unknown model:
- With API-key auth, Codex retries the Responses API 404 ten times
(about 59 s), then fails the turn with `{"message":"unexpected status
404 Not Found: The model \`<id>\` does not exist or you do not have
access to it., url: https://api.openai.com/v1/responses, cf-ray: …,
request id:
req_…","codexErrorInfo":{"httpConnectionFailed":{"httpStatusCode":404}}}`.
- With ChatGPT auth, the turn fails in about 3 s with `message` =
`{"type":"error","status":400,"error":{"type":"invalid_request_error","message":"The
'<id>' model is not supported when using Codex with a ChatGPT
account.","code":"model_not_found"}}`. Paperclip already classified this
one.
`createNativeProviderFailureObservation` parsed only the JSON envelope,
and the runner's provider-failure category for an HTTP 404 is `unknown`.
The terminal therefore stayed unclassified.
**Expected behavior**
The run is `native_provider_model_rejected`, the task shows `userAction:
"choose_model"` and names the model, no reconciliation incident opens,
and Retry completes the task after the user picks a valid model.
**Steps to reproduce**
`node cli/node_modules/tsx/dist/cli.mjs
tests/restart-chaos/config-wave.ts --faults CF3 --adapters codex
--references model_id --tasks 1 --concurrency 1 --restarts K2 --seed
206` on `master` (with `OPENAI_API_KEY` set).
**Paperclip version or commit**
`master` at
|
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|
DottaandClaude Opus 5.5
|
8a8abdb7b9 |
fix(recovery): retire the ledger row of an abandoned workspace save (#20502)
## Thinking Path
> - Paperclip is the open source app people use to manage AI agents for
work
> - Remote workspaces save their files to object storage. Each save
writes a row in the `execution_workspace_snapshots` ledger. The row
stays `pending` until the upload publishes it.
> - A restart that kills the server during a save leaves the save
unfinished. The ownership reconciler settles the save operation as
`remote_workspace_save_abandoned`. It does not touch the ledger row.
> - The row then stays `pending` for good, and its `updated_at` never
moves. The `remote_snapshot_ledger` ownership kind has no settle path,
so every later ownership report flags it as an `I2_settled` violation.
> - This pull request retires that row to a terminal state once no retry
can reopen its save, and gives `remote_snapshot_ledger` a settle path.
> - The benefit is a clean ownership report after a restart during a
save, and a ledger that tells the truth about uploads that will never
finish.
## Linked Issues or Issue Description
**What happened?**
A Daytona R1 × K1 restart-chaos wave (`w-20261110T071047-s7101`,
`--storage s3`) killed the server during the initial workspace save of 3
runs. The save operations ended `failed` /
`remote_workspace_save_abandoned`. Their `execution_workspace_snapshots`
rows stayed `pending` permanently, with no object key and no upload
attempt. The workspaces later committed newer snapshots (authority epoch
3, row epoch 1). Every ownership report afterwards flagged 3
`I2_settled` violations of kind `remote_snapshot_ledger`.
**Expected behavior**
When a save is abandoned and its run and writer epoch have ended, its
pending ledger row reaches a terminal state, and the ownership report
shows no `I2_settled` violation for it.
**Steps to reproduce**
1. Run a Daytona R1 × K1 wave with `--storage s3` and K1 at about +65 s,
so the restart lands inside the initial remote workspace save.
2. Let the runs finish or fail and the workspace commit a newer
snapshot.
3. Read `execution_workspace_snapshots`: the abandoned rows are still
`pending`. The server log shows `I2_settled` violations for
`remote_snapshot_ledger` on each report.
**Paperclip version or commit**
master at
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DottaandClaude
|
1402e92d1f |
fix(native): take back an executor lease that lapsed only because the host slept (#20474)
## Thinking Path > - Paperclip is the open source app people use to manage AI agents for work > - A native run holds an execution lease on its `native_run_finalizations` row. The lease lasts 20 minutes, and the owner renews it every 5 minutes. > - When a laptop sleeps for longer than the lease, the wall clock and the database clock move past `lease_expires_at`. The server's monotonic timers barely move. > - After the wake, the next renewal finds its own lease expired. It interrupts a healthy turn with `native_session_lease_lost`, and the user must click Retry. Nobody else took the lease. > - Several background consumers act on an expired lease without changing its owner. So expiry alone cannot simply be ignored for the owner. > - This pull request makes takeover explicit. The same owner can take back its own lapsed lease only when no other actor has recorded anything on the row or the run. > - The benefit is that a run interrupted only by host sleep continues with no Retry. A real takeover still fences the late owner out. ## Linked Issues or Issue Description **What happened?** The restart-chaos time fault TM2 stops the server and runner tree and ages every database time by one hour, as a stand-in for a laptop that slept. After the thaw, the next 5-minute renewal of the native execution lease found the lease expired. It interrupted the turn (`turn.interrupted` at 300 s, `native_session_lease_lost`). The failure settlement was then refused with the same code, and the UI showed "Couldn't finish this attempt" with Retry. The owner, attempt, boot and pid were unchanged. Evidence: wave `w-20261110T051535-s304` t01 (TM2, 1 h) failed R3. t02 in the same wave (TM1, a 113 s server-only freeze with no clock jump) passed, so the failure follows the clock jump and not the pause. **Is this a harness artifact?** No. TM2 ages the stored rows, and a real sleep moves the clock forward. Both produce the same comparison: a stored `lease_expires_at` is earlier than `clock_timestamp()` after the wake. The server's renewal timer and local deadline use the monotonic clock. On macOS and Linux that clock does not count suspended time, so they do not notice the sleep in either case. The first database check after the wake is the renewal predicate `lease_expires_at > clock_timestamp()`, and it fails in both cases. **Expected behavior** A run whose lease lapsed only because time jumped, and that no other actor claimed, keeps running and finishes without Retry. **Steps to reproduce** `node cli/node_modules/tsx/dist/cli.mjs tests/restart-chaos/main.ts --env local --adapters codex --workloads B5 --faults TM2 --time-age-hours 1 --concurrency 1 --tasks 2 --seed 304` with the harness from #20458. Refs #20458, #20500 ## What Changed - `native-execution-lease.ts`: add `nativeExecutionLeaseHeldCondition` and `lockNativeExecutionLeaseForReacquire`. A lease is held when it is live. For a local run, it is also held when it lapsed and is untouched. "Untouched" means all of these are true: - the claimed generation matches; - the phase is `observed` and no result is accepted; - `recovery_state`, `recovery_request_id`, `failure_code` and `next_attempt_at` are null; - `controller_host_hash` is not the board's attested-stopped stamp; - the run is still `running`, without the ownership-unverified error code and without a `nativeStartupCleanup` marker. - The caller's WHERE already matches the owner token, attempt and controller boot/pid/start. - The lock helper locks the coordinator row. If the lease lapsed, it also takes a share lock on the run row. The predicate then reads the latest committed run, and an in-flight run write cannot slip past it. - Renewal (`startNativeSessionExecutionLeaseRenewal` / `renewNativeSessionExecutionLease`) takes back a lapsed lease when the executor passes its claimed generation. Remote targets never do. A deadlock (40P01) on that rare path retries at the next tick, as a statement timeout already does. - `native-session-executor.ts`: the executor passes its generation to renewal. Failure settlement and the final release use the same lock and condition. After a result is accepted, a lapsed lease can only be relinquished (set to null), never renewed, because workspace finalization may act on it. - New `native-execution-lease-reacquire.test.ts` (embedded Postgres, 24 cases). - `doc/plans/2026-11-09-explicit-native-lease-claim-tokens.md`: step 2, which adds explicit claim tokens for the consumers this PR does not yet move. Consumer inventory (readers of `native_run_finalizations.lease_expires_at` that can act on a lapsed lease): - Restart recovery and takeover (`claimNativeRestartRecoveries`): claims first. It writes `recovery_state`, `lease_owner` or `controller_*` under the coordinator lock. - Finalizer and cleanup claims: claim first (`lease_owner`). - Failed-run owner release, environment settlement, observed-workspace preservation, retained-session cleanup: require a terminal run status, `committed`, or a recovery state. The rule refuses all of these. - Finalization reconciler, live recovery: require `retryable_failure`, a field the rule checks. - Board controller-stopped confirmation: writes `controller_host_hash`, which the rule checks. - Startup cleanup promotion: writes the run's `nativeStartupCleanup` marker, which the rule checks. It also applies only to runner-task leases. - Another server's orphan sweep: writes the run's ownership-unverified code. The rule checks it when the marker lands first. The reverse order is deferred (see Risks). - Workspace finalization copyback: acts on a lapsed post-result lease without a coordinator write. Post-result leases are therefore never renewed (deferred to step 2). - Accepted-result and token lease settlement, checkpoints, cancellation delivery, admission and the other readers: act on live leases only, or are read-only. ## Verification - `cd server && npx vitest run src/services/native-runtime/native-execution-lease-reacquire.test.ts` passes (24/24) on this branch. With the source files from `origin/master`, 5 fail, including "lets the same owner take back a lease that lapsed untouched" and "renews from the shared timer after the sleep instead of interrupting the turn". - (a) The owner takes back its lapsed lease when no other actor claimed it. Also covered: the shared 5-minute timer, rows saved by the previous release, and the post-result relinquish. - (b) 14 cases where a consumer claimed first fence the owner out and leave the row unchanged. A release over a recorded recovery claim is refused. A different boot (a deploy mid-run), a different generation, a missing generation and a remote target are refused. - (c) Races have exactly one winner: a claimant and the owner lock the coordinator in each order, an in-flight run status write races the owner, and 8 simultaneous starts each have one winner. - Existing suites pass: `native-execution-lease.test.ts`, `native-session-executor.test.ts`, `native-runner-restart-recovery`, `native-runner-restart-lease-renewal`, `native-runner-restart-preparation` and `native-runner-restart-checkpoint-cost` integration tests. - Live proof: `B5 × TM2 --time-age-hours 1 --tasks 2 --seed 304` with `--server-from` this branch. Wave `w-20261110T083444-s304` passed 2/2, with no Retry and no `native_session_lease_lost`. - Both runs ran past the 300 s renewal after the one-hour aging, at the exact point where `origin/master` fails. t01 ran 310 s and t02 ran 319 s. Each was a single run that succeeded. - The harness used the aging exclusion from #20500 (merged): process start identity is not aged. Without that exclusion, TM2 also moves `controller_process_started_at`. The live owner then fails its identity check, which a real sleep never causes. An earlier wave on the unpatched harness, `w-20261110T072106-s304`, failed 0/2 for that reason only. ## Risks - Previous release: no persisted shape changes and no migration. Rows saved by the previous release have the same columns, and a null `controller_host_hash` is accepted. A deploy that lands mid-run cannot take back the old server's lease, because the boot and pid differ. - On the normal path, a live lease takes the same single coordinator lock as before. The run share lock is taken only after a lapse, and nothing is added before `turn.start`. - Deferred to step 2 (see the plan): - The orphan sweep of another server process can read the row before the owner takes the lease back and write after. That run would carry an ownership-unverified error while it is live. - Shared-workspace holder detection reads a silent run with lapsed leases as gone. - Post-result leases are not renewed. - Remote leases are unchanged. ## Model Used - Claude Opus 5.5 (`claude-opus-5-5`), Anthropic, used in Claude Code with tool use (shell, file editing, sub-agent code audit). ## Checklist - [x] I have included a thinking path that traces from project context to this change - [x] I have specified the model used (with version and capability details) - [x] I have checked ROADMAP.md and confirmed this PR does not duplicate planned core work - [x] I have searched GitHub for duplicate or related PRs and linked them above - [x] I have either (a) linked existing issues with `Fixes: #` / `Closes #` / `Refs #` OR (b) described the issue in-PR following the relevant issue template - [x] I have not referenced internal/instance-local Paperclip issues or links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip` URLs) - [x] My branch name describes the change (e.g. `docs/...`, `fix/...`) and contains no internal Paperclip ticket id or instance-derived details - [x] I have run tests locally and they pass - [x] I have added or updated tests where applicable - [x] I have updated relevant documentation to reflect my changes - [x] I have considered and documented any risks above - [ ] All Paperclip CI gates are green - [ ] Greptile is 5/5 with no open P2s, recommendations, or follow-ups - [ ] I will address all Greptile and reviewer comments before requesting merge 🤖 Generated with [Claude Code](https://claude.com/claude-code) --------- Co-authored-by: Claude <noreply@anthropic.com> |
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DottaandClaude
|
a14ae9b5c9 |
fix(workspaces): name a failed workspace setup command on the task page (#20478)
## Thinking Path > - Paperclip is the open source app people use to manage AI agents for work > - Before an agent starts, Paperclip prepares the task workspace and runs the project's configured setup commands (for example the workspace provision command) > - When that command fails, the run fails as `setup_failed`, and the task stops with a Retry > - The task page shows only "Failed" and a generic recovery notice. The real error (the command, its exit status and output) is visible only on the run page > - The user cannot see from the task which setting is broken or what to change > - This pull request records a bounded, named cause for a failed setup command and shows it on the task page > - The benefit is that the task names the broken setting and what to change, and classification, retry and recovery stay the same ## Linked Issues or Issue Description **What happened?** The restart-chaos config fault wave CF1 sets a project `workspaceStrategy.provisionCommand` to `bash ./scripts/provision-worktree.sh`, a script that does not exist. The run fails as `setup_failed` with `Execution workspace provision command "bash ./scripts/provision-worktree.sh" failed: bash: ./scripts/provision-worktree.sh: No such file or directory`. The task page shows "Failed" and "Paperclip automatically retried continuation … still has no live execution path". The grader fails the task as `CF1/provision_command:message_only_in_run_detail`. **Expected behavior** The task page names the failed setup step, the configured command, its exit status and a short tail of its output, and says what to change. Retry behavior stays the same. **Steps to reproduce** `node cli/node_modules/tsx/dist/cli.mjs tests/restart-chaos/config-wave.ts --faults CF1 --adapters codex --tasks 2 --concurrency 2 --restarts K1,K2 --seed 204` on `master`. **Paperclip version or commit** `master` at |
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DottaandClaude
|
52b906b112 |
fix(native): let Retry continue after a run that failed before native selection (#20482)
## Thinking Path > - Paperclip is the open source app people use to manage AI agents for work > - Before Paperclip starts a new message or a Retry after a failed native run, it proves that the run's local process stopped > - A native run can fail before native selection, for example when a budget reservation is refused or a preparation query fails. That run never had a runner, a native session or a process ID > - The stop gate still waited for a stop record of that process. Retry returned 202, then the task stayed on `retryWait.reason=process_identity_missing` and no run started > - Native selection writes the run's native issue, native session, runner instance and coordinator in one transaction. A runner launch needs all of them, and the executor records `native.process_start_requested` before any spawn > - This pull request treats a settled run with none of that evidence as having nothing to stop > - The benefit is that Retry and new messages continue after a failure that happened before the agent started ## Linked Issues or Issue Description **What happened?** In local restart-chaos database-load wave `w-20261110T050818-s20386`, all 4 tasks failed before any agent process started. One example is t01, run `f7e2ee55`. A preparation query failed, and the run ended `adapter_failed` with no native session, no runner instance, no process ID and no launch event. Retry returned 202. For 16 or more minutes, `retryWait` then stayed on `process_identity_missing` and no run started. **Expected behavior** If the previous run never had a process, there is nothing to verify, so Retry and new input continue. **Steps to reproduce** 1. Make a native run fail before native selection (for example, a refused budget reservation or a failed query). 2. Click Retry, or send a message. Before this change, the input waits on `process_identity_missing` and does not continue. ## What Changed - `native-local-process-stop.ts`: `nativeRunRefusedBeforeLaunch` (renamed `nativeRunNeverLaunched`) now also proves "never launched" for a settled native run in this state: - no process ID and no process group; - no native issue, no native session and no runner instance (native selection writes them together). A coordinator row requires the native issue by foreign key, so the native-issue check also rules out a coordinator; - no launch request, no identity record, no `adapter.invoke` and no runner-authored event (any event with a source event ID). The existing case, a run that the cleanup quarantine refused before launch, does not change. - `explicit-native-continuation.test.ts`: the guard "failed for another reason without a process record" now separates real pre-selection failures from the shapes that must stay held. - Admitted: a run that failed before it requested a launch. This case is red on `master`. - Still held on `process_identity_missing`: a run that has a runner event, a run with a prepared native session, and a run with a coordinator, for `failed`, `timed_out` and `interrupted` runs. A `timed_out` run that failed before launch is admitted. The chat suite's `unreconciled` case (a native issue and phase, no session) also stays held. ## Verification - Red/green: on `master`, `routes input after a run failed before it requested a launch` fails with `process_identity_missing`. It passes with this change. - `vitest run src/services/explicit-native-continuation.test.ts src/services/quarantined-task-retry.test.ts src/__tests__/issue-confirm-run-stopped-routes.test.ts`: 3 files, 462 tests pass. This includes every existing "keeps the hold for missing_process" and historical-run case. - Server `tsc --noEmit` passes. ## Risks - Low risk. The new proof needs structural evidence that no runner could exist: no native selection and no launch or runner event. A run that reached native selection, or that has any launch evidence, keeps every existing stop proof. - The proof does not depend on the build: a runner from any build needs the native session and the runner instance. Saved runs from older builds that were selected keep those fields, so they stay held exactly as before. - Relates to #20477, which fixes the restart window inside an answer run's attachment. This pull request is independent of it. ## Model Used - Claude Opus 5.5 (`claude-opus-5-5`), via Claude Code with tool use (shell, file edits, test execution). ## Checklist - [x] I have included a thinking path that traces from project context to this change - [x] I have specified the model used (with version and capability details) - [x] I have checked ROADMAP.md and confirmed this PR does not duplicate planned core work - [x] I have searched GitHub for duplicate or related PRs and linked them above - [x] I have either (a) linked existing issues with `Fixes: #` / `Closes #` / `Refs #` OR (b) described the issue in-PR following the relevant issue template - [x] I have not referenced internal/instance-local Paperclip issues or links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip` URLs) - [x] My branch name describes the change (e.g. `docs/...`, `fix/...`) and contains no internal Paperclip ticket id or instance-derived details - [x] I have run tests locally and they pass - [x] I have added or updated tests where applicable - [x] I have updated relevant documentation to reflect my changes - [x] I have considered and documented any risks above - [ ] All Paperclip CI gates are green - [ ] Greptile is 5/5 with no open P2s, recommendations, or follow-ups - [x] I will address all Greptile and reviewer comments before requesting merge Refs #19829 🤖 Generated with [Claude Code](https://claude.com/claude-code) --------- Co-authored-by: Claude <noreply@anthropic.com> |
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DottaandClaude
|
1e13c58a4e |
fix(heartbeat): name the cause of generic adapter failures and keep SQL text off the board (#20483)
## Thinking Path > - Paperclip is the open source app people use to manage AI agents for work. > - Heartbeat run settlement records why a run failed, and the board shows that record. > - Runs that fail without a named code settle as `adapter_failed` (or `setup_failed`) with no cause. > - A user, an operator, and the restart chaos harness cannot tell what went wrong from such a run. > - Some run errors also show raw SQL statement text to users. > - This pull request records a bounded `failureCause` code for generic failures, shows it on the board, and keeps SQL text out of run errors. > - The benefit is that a generic failure now names its cause, for example "adapter failed (40001)", without leaking messages, SQL, or secrets. ## Linked Issues or Issue Description Refs #20385 (the nested-cause extraction this change reuses). Related: #20421 (restart chaos universal checks U1-U4). **What happened?** The restart chaos audit of 79 saved waves found 30 failed runs with `errorCode: "adapter_failed"` and a null or generic error. Every U3 ("diagnosable") warning was `adapter_failed`. Nobody could tell what failed. Some board run errors also showed raw SQL statement text from wrapped database errors (Drizzle `Failed query: ... params: ...`). **Expected behavior** A run that fails with a generic code names a short, safe cause. The board shows the cause next to the stop reason. Run error text never shows SQL statements or their parameters. **Steps to reproduce** Make an adapter throw a wrapped database error (an `Error` whose nested `cause` has `code: "40001"` and whose message has a Drizzle `Failed query:` statement). Before this change, the run settles as `adapter_failed` with no cause, and `heartbeat_runs.error` contains the SQL statement and parameters. The new tests in `server/src/services/heartbeat/run-completion.test.ts` reproduce this. ## What Changed - Runner: move the #20385 event-commit cause extraction into `safeErrorCauseCode` (`packages/paperclip-runner/src/control-plane/safe-error-cause.ts`) and export it. The Runner's own diagnostics use the same function, unchanged in behavior. - Shared: add the `failureCause` contract (`packages/shared/src/run-failure-cause.ts`): one `[A-Za-z0-9_.:-]` token of at most 80 characters, `normalizeRunFailureCause`, `readRunFailureCause`, and `withoutSqlStatementText`. - Server: add `server/src/services/heartbeat/run-failure-cause.ts`. Settlement records `resultJson.failureCause` only when the code is generic (`adapter_failed`, `setup_failed`). `errorCode` stays the same. - Thrown errors (`failRun`, `failRunSetup`): `provider_http_<status>`, else `provider_<category>`, else the first safe code in the error and up to three nested causes (`40001`, `ECONNRESET`), else the error class name, else `unknown_error`. - Adapter results without a code (`completeRun`): the error family, `signal_<name>`, `process_cancellation_failed`, `exit_code_<n>`, `adapter_reported_error`, or `unknown_error`. - The failure log lines (`heartbeat execution failed`, `heartbeat execution setup failed`, and a new `heartbeat run failed` warning for generic adapter results) include `failureCause` and `errorCode`. - Server: replace SQL statement text in run error text with "Database query failed (<cause>)" at all three settlement paths, including the cancelled branch. The execution blocker's `runError`, the attention inbox (failed-run excerpt and metadata), and continuation summaries apply the same replacement on read, so older rows also stop showing SQL there. - Server: Retry admission and failed-preparation replay accept only a closed set of `resultJson` keys. `failureCause` is added to each of those lists (`task-retry.ts`, `chat-channels/failed-run-retry.ts`, `cancelled-native-startup.ts`, `fresh-workspace-continuation.ts`). It is a diagnostic code with no execution or replay authority, so a failed-preparation run stays retryable. - Server: `runsForIssue` returns a validated top-level `failureCause`. It is null for older rows, non-string JSON values, and malformed values. - UI: `RunForIssue.failureCause`; `IssueRunLedger` shows "adapter failed (40001)". Older runs keep "adapter failed". The Storybook run-ledger fixture has a failed run with a cause. - Restart chaos harness: run samples keep `failureCause`. U3 treats a generic code with a specific `failureCause` as diagnosable. A bare `Error`, `unknown_error`, or the no-code fallback `adapter_reported_error` still counts as vague. U3 stays a warning. - Docs: `doc/run-log-events.md` and the harness README describe the field and the SQL replacement. ## Verification - Red before the fix: the four new `run-completion.test.ts` cases failed against `origin/master`'s `run-completion.ts` (no `failureCause`, SQL text in `error`). - Green: - `server/src/services/heartbeat/run-completion.test.ts`: all tests passed (real embedded PostgreSQL). New cases cover a nested `40001` three levels deep for execution and setup failures, SQL and a secret parameter absent from `error` and `resultJson`, the bound (an 81-character code and a SQL "code" fall back to the class name), `exit_code_137` for a code-less adapter result, a cancelled result with SQL text, no cause for a named code, and the log line. On this loaded host the suite's `afterAll` database teardown hit its 30 s hook limit after every test passed (the known local teardown limit, also seen in #20385). CI runs the suite. - `server/src/services/heartbeat/run-failure-cause.test.ts` (4), `server/src/__tests__/activity-service.test.ts` (recorded, legacy, malformed, overlong, boolean, and number cause projections), `server/src/__tests__/issue-continuation-summary.test.ts` (legacy SQL row). - `packages/shared/src/run-failure-cause.test.ts` (6), `ui/src/components/IssueRunLedger.test.tsx` (21), restart chaos `universal.test.ts` and `observer.test.ts`. - `packages/paperclip-runner/src/control-plane/durable-prp-control-plane.test.ts`: 207 passed (the stall-diagnostic cases still read `40001` and `ECONNRESET`). - Typecheck: shared, runner, server (all layers), UI, restart chaos harness. `pnpm check:token-gates`: all gates clean. - `pnpm verify` returned exit 2 (global doc input changed); required CI supplies broad coverage. - CI on `6295f8d` found that the new key made failed-preparation runs ineligible for Retry (`chat-channels.integration.test.ts` saved board-message Retry got 409; `workspace-recovery-preparation-dispatch.test.ts` dispatched 0 Retries). Both reproduced locally and pass after the allowlist fix, with the other 459 Retry cases in `chat-channels.integration.test.ts` and all 25 in `workspace-recovery-preparation-dispatch.test.ts`. - No chaos waves were run. Storybook was not opened in a browser; the fixture typechecks and the label is covered by the UI test. ## Risks - Low risk. `errorCode` values do not change, so retry, recovery, and comparison logic is unaffected. - No schema change and no migration. `failureCause` is a new optional `resultJson` key. Rows saved by the previous release have no key and render as before; a new row read by an old server is ignored. - The SQL replacement only acts on a Drizzle `Failed query:` marker, or on `$n` placeholder text with a statement shape. Ordinary error text does not change. When it acts, it also drops the text after the statement. - Code that checks `resultJson` against a closed key list must allow `failureCause`. I found and updated the four lists on the Retry path; a list I missed would refuse a Retry for a run with a generic failure. - This is the run log / instance database path. It adds no Telemetry event. - The server failure log line still logs the raw error message (unchanged behavior); only the board-facing text is changed. ## Model Used - Claude Opus 5.5 (Anthropic), model ID `claude-opus-5-5`, used through Claude Code with tool use (shell, file editing) and code execution for tests. ## Checklist - [x] I have included a thinking path that traces from project context to this change - [x] I have specified the model used (with version and capability details) - [x] I have checked ROADMAP.md and confirmed this PR does not duplicate planned core work - [x] I have searched GitHub for duplicate or related PRs and linked them above - [x] I have either (a) linked existing issues with `Fixes: #` / `Closes #` / `Refs #` OR (b) described the issue in-PR following the relevant issue template - [x] I have not referenced internal/instance-local Paperclip issues or links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip` URLs) - [x] My branch name describes the change (e.g. `docs/...`, `fix/...`) and contains no internal Paperclip ticket id or instance-derived details - [x] I have run tests locally and they pass - [x] I have added or updated tests where applicable - [x] I have updated relevant documentation to reflect my changes - [x] I have considered and documented any risks above - [ ] All Paperclip CI gates are green - [ ] Greptile is 5/5 with no open P2s, recommendations, or follow-ups - [x] I will address all Greptile and reviewer comments before requesting merge 🤖 Generated with [Claude Code](https://claude.com/claude-code) --------- Co-authored-by: Claude <noreply@anthropic.com> |
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Devin FoleyandPaperclip
|
53c9be8d41 |
Reuse identical captured workspace archives (#20476)
Reuse the current committed snapshot when a fresh capture matches its manifest and plaintext archive hash and size. Preserve the original encryption binding and verify each new run receipt for recovery, concurrent replay and storage request statistics. Verified with 338 focused save and recovery tests, server typecheck and build, all final-head CI checks, and Greptile 5/5. Co-Authored-By: Paperclip <noreply@paperclip.ing> |
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DottaandClaude
|
233f615644 |
fix(heartbeat): resume legacy runs a graceful shutdown stopped before dispatch (#20461)
## Thinking Path
> - Paperclip is the open source app people use to manage AI agents for
work
> - The heartbeat service runs agent turns and recovers them after a
server restart
> - A graceful restart can stop a legacy run (for example a `process`
adapter agent) while the run is still in setup, before the adapter
starts
> - That run was parked with `legacy_execution_requires_reconciliation`,
so automatic recovery stopped
> - A `process` or `http` adapter cannot continue that hold through
Retry, so the accepted Retry waited forever and the task stayed blocked
> - This pull request proves "no adapter work started" for that case and
resumes the run automatically
> - The benefit is that a restart during setup no longer strands the
task, and Retry starts a run for holds that an older server saved
## Linked Issues or Issue Description
**What happened?**
The restart-chaos harness ran workload Q3 (a board approves an agent's
app action late) with a `process` adapter agent. A graceful restart
(fault K2) fired right after the approval. The agent's follow-up run was
interrupted with `server_shutdown_interrupted` 0.2 s after it started,
while it was still in setup. Automatic recovery stopped with
`legacy_execution_requires_reconciliation`. The board clicked Retry. The
server accepted the Retry (HTTP 202), but no run started. The task
showed "Retry is waiting for execution checks" (`retryWait.reason =
execution_recovery`) forever.
**Expected behavior**
A run that a graceful shutdown stops before any adapter work must resume
automatically. An accepted Retry must start a run.
**Steps to reproduce**
1. Run a `process` adapter agent on a task.
2. Send SIGTERM to the server while the run is still in setup (before
the adapter starts).
3. Restart the server. The task is blocked with
`legacy_execution_requires_reconciliation`.
4. Click Retry. The request is accepted, but no run starts.
**Paperclip version or commit**
master at
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DottaandClaude Opus 5.5
|
693de27c90 |
fix(storage): wait out expired or rotated S3 credentials and re-resolve the key (#20456)
## Thinking Path > - Paperclip is the open source app people use to manage AI agents for work > - In cloud mode, run logs, provider traces, attachments and remote workspace snapshots go to S3 > - The server uses the default AWS credential chain, and real keys expire or rotate while runs are in flight > - #20299 made runs wait out a storage outage, but a 403 `ExpiredToken`, `InvalidAccessKeyId` or `SignatureDoesNotMatch` was a permanent `adapter_failed` > - The SDK also caches a key until its stated expiration (forever for a key with none), so a rotated key was never picked up > - This pull request treats credential rejections as a storage wait and re-resolves the key from the credential chain after a rejection > - The benefit is that runs survive key expiry and rotation without failed attempts or a manual Retry ## Linked Issues or Issue Description Refs #20299 (storage outage wait). Harness that found this: #20455. **What existing behavior does this improve?** Runs wait out S3 outages (5xx, timeouts, resets) but fail at once when the store rejects the server's credentials. **Subsystem affected** server storage (S3 provider) and heartbeat run completion. **Current behavior** Restart-chaos wave w-20261110T041556-s501 (`--storage s3 --storage-faults ST5`): one 41 s window of 403 `ExpiredToken` failed 4 of 6 tasks. Each run ended `adapter_failed` with "The provided token has expired.", and the automatic retries failed within one second, so the tasks needed a board Retry (R3 `retry_did_not_complete`). **Proposed behavior** A credential rejection is a transient infrastructure condition. Critical-path storage calls wait it out like an outage, and a run that stops on it gets the `storage_unavailable` wait retry. After each rejection the S3 client re-resolves its key with `forceRefresh`, so the next attempt signs with a rotated key. The run error names the credentials. If they never come back, the exhausted-wait message tells the operator to check the storage service and its credentials. **Reason and benefit** Expiring or rotated keys are normal in cloud deployments. They must not fail work. ## What Changed - `storage-unavailable.ts`: `ExpiredToken`, `ExpiredTokenException`, `TokenRefreshRequired`, `InvalidToken`, `InvalidAccessKeyId`, `InvalidClientTokenId` and `SignatureDoesNotMatch` answered by the store with 400/403 count as storage unavailable. `AccessDenied` and a credential chain that cannot load any key (`CredentialsProviderError`) stay permanent. New credential-specific run message; the exhausted message also names credentials. - `s3-credential-refresh.ts` (new): S3 client middleware that calls the client's credential provider with `forceRefresh` after a rejection, once per credential generation (requests that signed with an already-replaced key do not refresh again), then rethrows so the existing storage wait owns the retry. - `s3-provider.ts`: installs the middleware on both S3 clients. - `run-completion.ts`: uses the credential-aware message. ## Verification - `cd server && npx vitest run src/__tests__/storage-s3-credential-rotation.test.ts src/storage/ src/__tests__/storage-outage-wait.test.ts src/__tests__/storage-s3-transient-retry.test.ts src/__tests__/storage-s3-failure-diagnostics.test.ts src/services/heartbeat/run-completion.test.ts` (186 pass). - The new `storage-s3-credential-rotation.test.ts` fails 5 of 6 cases on master (red) and passes with this change (green). It covers a real key rotation through the default credential chain, 403 windows for each code, the message, and `AccessDenied` staying permanent. - `cd server && npx tsc --noEmit` passes. - `s3-credential-refresh.test.ts`: two parallel requests signed with the old key, rejected 50 ms and 400 ms apart, cause one forced lookup (3 before the generation check, 2 after). - Restart-chaos rerun on a build with this fix and #20455: w-20261110T050044-s503 (`--env local --workloads A1,C1 --faults K1,K2 --tasks 8 --storage s3 --storage-faults ST5,ST5R --storage-fault-seconds 30-90`) passed 8/8 tasks (R1–R6 and T) with a 39 s `ExpiredToken` window and an 85 s real key rotation (76 credential 403s). Before the fix, w-20261110T041556-s501 failed 4/6 tasks. ## Risks - Scope: calls with a Readable body (streamed `putObject`, buffered multipart) cannot be resent, so they still fail on the first rejection, as they do for outages. The middleware has already re-resolved the key, so the caller's next attempt (the run-level wait retry for run work) uses the new key. - A key that the store rejects for good (for example a wrong secret) now waits up to the storage wait budget (5 min in the call, then up to 10 run retries) before the board shows the exhausted message, instead of failing at once. - `forceRefresh` re-runs the credential chain after a rejection. Calls are coalesced, so a burst of rejections causes one refresh. ## Model Used - Claude Opus 5.5 (`claude-opus-5-5`), Anthropic, with tool use and code execution in Claude Code. ## Checklist - [x] I have included a thinking path that traces from project context to this change - [x] I have specified the model used (with version and capability details) - [x] I have checked ROADMAP.md and confirmed this PR does not duplicate planned core work - [x] I have searched GitHub for duplicate or related PRs and linked them above - [x] I have either (a) linked existing issues with `Fixes: #` / `Closes #` / `Refs #` OR (b) described the issue in-PR following the relevant issue template - [x] I have not referenced internal/instance-local Paperclip issues or links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip` URLs) - [x] My branch name describes the change (e.g. `docs/...`, `fix/...`) and contains no internal Paperclip ticket id or instance-derived details - [x] I have run tests locally and they pass - [x] I have added or updated tests where applicable - [x] I have updated relevant documentation to reflect my changes - [x] I have considered and documented any risks above - [ ] All Paperclip CI gates are green - [ ] Greptile is 5/5 with no open P2s, recommendations, or follow-ups - [x] I will address all Greptile and reviewer comments before requesting merge 🤖 Generated with [Claude Code](https://claude.com/claude-code) --------- Co-authored-by: Claude Opus 5.5 <noreply@anthropic.com> |
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Nicky Leach
|
8809f44b5e | Connect Codex and Claude login to agent computers (#20417) | ||
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DottaandClaude Opus 5.5
|
120017e39d |
fix(workspaces): read saved workspace files in place instead of extracting the whole archive (#20442)
## Thinking Path
> - Paperclip is the open source app people use to manage AI agents for
work
> - When a cloud task finishes, its workspace is saved as an encrypted
snapshot and its sandbox is released. The board's Files view then reads
that saved copy
> - Saved Files access downloaded, decrypted and extracted the whole
archive for every request, and refused archives over 512 MiB with
`too_large`
> - A finished task in a Paperclip-sized repository saves a snapshot of
about 730 MiB, so its files could not be listed or opened at all
> - The archive format already records each file's size and SHA-256, and
the snapshot records the manifest digest, so single files can be read
and verified without the rest of the archive
> - This pull request reads the saved archive in place, one verified
file at a time
> - The benefit is that users can open any file of a large finished
workspace quickly, with bounded memory and no whole-archive transfer
## Linked Issues or Issue Description
**What happened?**
In restart-chaos waves on Daytona with a real Paperclip clone, the
committed workspace snapshots were 763,944,535 bytes. After the sandbox
was released, every saved Files read returned 422 `too_large` (506 reads
in total), because `createSavedWorkspaceLoader` refuses archives over
`maxArchiveBytes` (512 MiB). The board Files view uses the same loader,
so it fails the same way.
**Expected behavior**
A user can list and open any single file of a saved workspace of
Paperclip-repository size without the server extracting or buffering the
whole archive. Memory and time stay bounded per request, and integrity
is still verified.
**Steps to reproduce**
1. Run a cloud task whose workspace is a large repository, so the final
snapshot exceeds 512 MiB.
2. Let the task finish and its sandbox be released.
3. Open the task's Files view, or call `GET
/api/issues/:id/file-resources/content?workspace=execution&path=…`: it
returns 422 `too_large`.
**Paperclip version or commit**
`master` at
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DottaandClaude Opus 5.5
|
d064bd21e4 |
perf(plugins): pick each lifecycle resource's head in one pass (#20406)
## Thinking Path > - Paperclip is the open source app people use to manage AI agents for work > - Plugins receive resource lifecycle events (agent, project and agent-runtime changes) through a durable inbox > - The inbox lists an event only when it is the first unacknowledged event of its resource, so each resource delivers in order > - The list query checked that rule with a `NOT EXISTS` for every unacknowledged event. Each check walked the resource's whole acknowledged history > - A resource with a long acknowledged history and a backlog behind a deferred head costs history × backlog probes. On the hosted staging instance three copies of this statement ran for more than 23 minutes each, on a database that was at 6–8 of 8 vCPU all day > - This pull request picks the deliverable head of each resource in one pass > - The benefit is a list call that is linear in the company's events, and database CPU that other requests can use ## Linked Issues or Issue Description **What existing behavior does this improve?** `pluginLifecycleInbox(...).list()` in `server/src/services/plugin-lifecycle-inbox.ts`. The delivery worker calls it in a loop and when it checks for idle work. **Subsystem affected** Plugin lifecycle delivery (server service, PostgreSQL query). **Current behavior** Neon "Active queries" for the staging database on 2026-11-09 showed three copies of this statement at 1,381–1,401 s each. In the same view, trivial primary-key reads waited 100–280 ms. Locally, one resource with 2,000 acknowledged events and a 2,000-event backlog takes 3.5 s for one `list()` call. The cost grows with acknowledged history × backlog. **Proposed behavior** Only the head of a resource is deliverable: its unacknowledged creation if it has one, otherwise its lowest unacknowledged event. This is exactly the set that the old `firstForResource` predicate admits. The query now selects these heads with `DISTINCT ON (resource_type, resource_id)` ordered by `(action <> 'create'), id`, and then applies the page cursor, order and limit. **Reason and benefit** The same fixture lists in 8–24 ms instead of 3.5 s. Long-running copies of this statement no longer hold database CPU that every request needs. **Breaking changes** None. `acknowledge()` keeps its per-event eligibility check. ## What Changed - `pluginLifecycleInbox.list()` uses a `lifecycle_heads` CTE with `DISTINCT ON` to pick one head per resource, then filters by the `afterId` cursor and orders by id with the limit. - New test in `server/src/__tests__/resource-lifecycle-events.test.ts`: one resource with 2,000 acknowledged events and a 2,000-event backlog, plus a second resource. It asserts the exact heads in id order and a list time below 1 s (3.5 s before, 8–24 ms after). ## Verification - `cd server && npx vitest run src/__tests__/resource-lifecycle-events.test.ts -t "acknowledged backlog"` — red on `origin/master` (3,546 ms), green with the change (24 ms, 8 ms). - `cd server && npx vitest run src/__tests__/resource-lifecycle-events.test.ts src/__tests__/plugin-lifecycle-delivery.test.ts src/__tests__/agent-runtime-assignments.test.ts src/__tests__/agent-runtime-hooks.test.ts src/__tests__/project-instance-secrets.test.ts` — the existing ordering, paging, per-plugin isolation, backfilled-creation and late-commit tests pass. (One `agent-runtime-hooks` case is timing-sensitive on a loaded machine and also fails on `origin/master` there. It passed 22/22 on rerun.) - `pnpm verify` selection and CI. - After deploy: Neon "Active queries" no longer shows long-running `resource_lifecycle_events … NOT EXISTS` statements. ## Risks - Low risk. The result set is the same: per resource, the unacknowledged creation, otherwise the lowest unacknowledged id. The cursor still applies after the head is chosen, as before, so paging past failed heads does not skip later events. - Each call still reads the company's events of the requested types once. A company with millions of acknowledged events still pays one linear pass per call. A per-plugin acknowledgment watermark would remove that and is out of scope. ## Model Used - Claude Opus 5.5 (`claude-opus-5-5`), Anthropic, via Claude Code with tool use (shell, browser, code execution). Extended reasoning on. ## Checklist - [x] I have included a thinking path that traces from project context to this change - [x] I have specified the model used (with version and capability details) - [x] I have checked ROADMAP.md and confirmed this PR does not duplicate planned core work - [x] I have searched GitHub for duplicate or related PRs and linked them above - [x] I have either (a) linked existing issues with `Fixes: #` / `Closes #` / `Refs #` OR (b) described the issue in-PR following the relevant issue template - [x] I have not referenced internal/instance-local Paperclip issues or links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip` URLs) - [x] My branch name describes the change (e.g. `docs/...`, `fix/...`) and contains no internal Paperclip ticket id or instance-derived details - [x] I have run tests locally and they pass - [x] I have added or updated tests where applicable - [x] I have updated relevant documentation to reflect my changes - [x] I have considered and documented any risks above - [ ] All Paperclip CI gates are green - [ ] Greptile is 5/5 with no open P2s, recommendations, or follow-ups - [x] I will address all Greptile and reviewer comments before requesting merge 🤖 Generated with [Claude Code](https://claude.com/claude-code) --------- Co-authored-by: Claude Opus 5.5 <noreply@anthropic.com> |