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Author	SHA1	Message	Date
dependabot[bot]	cf8ad63c80	build(deps-dev): bump tsx from 4.23.12 to 4.23.15 (#12965 ) Bumps [tsx](https://github.com/privatenumber/tsx) from 4.23.12 to 4.23.15. <details> <summary>Release notes</summary> <p><em>Sourced from <a href="https://github.com/privatenumber/tsx/releases">tsx's releases</a>.</em></p> <blockquote> <h2>v4.23.15</h2> <h2><a href="https://github.com/privatenumber/tsx/compare/v4.23.14...v4.23.15">4.23.15</a> (2026-09-20)</h2> <h3>Bug Fixes</h3> <ul> <li>exclude bare builtins from namespace inheritance (<a href="https://github.com/privatenumber/tsx/commit/38e158857e50bca311be7c232a5057e5a2e5347a">38e1588</a>)</li> <li>expose require.cache and require.extensions to tsImport CommonJS modules (<a href="https://github.com/privatenumber/tsx/commit/2da34075afaed43e2b7fd0aca5fbebaaf337ff3a">2da3407</a>)</li> <li>make namespaced register() overloads portable for declaration emit (<a href="https://github.com/privatenumber/tsx/commit/562c434a5c8695e74327bbeb51cfeb9b86fc7e15">562c434</a>)</li> </ul> <hr /> <p>This release is also available on:</p> <ul> <li><a href="https://www.npmjs.com/package/tsx/v/4.23.15"><code>npm package (@latest dist-tag)</code></a></li> </ul> <h2>v4.23.14</h2> <h2><a href="https://github.com/privatenumber/tsx/compare/v4.23.13...v4.23.14">4.23.14</a> (2026-09-20)</h2> <h3>Bug Fixes</h3> <ul> <li>restore the CJS bridge namespace for Node 24 require(esm) under tsImport() (<a href="https://redirect.github.com/privatenumber/tsx/issues/802">#802</a>) (<a href="https://github.com/privatenumber/tsx/commit/6e5236b065738d3687a06396d064774cfede390f">6e5236b</a>)</li> </ul> <hr /> <p>This release is also available on:</p> <ul> <li><a href="https://www.npmjs.com/package/tsx/v/4.23.14"><code>npm package (@latest dist-tag)</code></a></li> </ul> <h2>v4.23.13</h2> <h2><a href="https://github.com/privatenumber/tsx/compare/v4.23.12...v4.23.13">4.23.13</a> (2026-08-30)</h2> <h3>Bug Fixes</h3> <ul> <li><strong>cache:</strong> bound shared transform cache memory (<a href="https://redirect.github.com/privatenumber/tsx/issues/835">#835</a>) (<a href="https://github.com/privatenumber/tsx/commit/28e1f12d04cd2afe1db17f8555b14fe5fb567c6e">28e1f12</a>)</li> </ul> <hr /> <p>This release is also available on:</p> <ul> <li><a href="https://www.npmjs.com/package/tsx/v/4.23.13"><code>npm package (@latest dist-tag)</code></a></li> </ul> </blockquote> </details> <details> <summary>Commits</summary> <ul> <li><a href="https://github.com/privatenumber/tsx/commit/ca66105a17a2a4c6503fe3a12b5b9ec408286011"><code>ca66105</code></a> test: fix drive-less file URLs in ESM resolver fixtures</li> <li><a href="https://github.com/privatenumber/tsx/commit/2da34075afaed43e2b7fd0aca5fbebaaf337ff3a"><code>2da3407</code></a> fix: expose require.cache and require.extensions to tsImport CommonJS modules</li> <li><a href="https://github.com/privatenumber/tsx/commit/38e158857e50bca311be7c232a5057e5a2e5347a"><code>38e1588</code></a> fix: exclude bare builtins from namespace inheritance</li> <li><a href="https://github.com/privatenumber/tsx/commit/562c434a5c8695e74327bbeb51cfeb9b86fc7e15"><code>562c434</code></a> fix: make namespaced register() overloads portable for declaration emit</li> <li><a href="https://github.com/privatenumber/tsx/commit/edfb1f05a3f40b879a41a03a0801c2abd3a3ecf9"><code>edfb1f0</code></a> build: upgrade pkgroll and externalize CJS loader reference</li> <li><a href="https://github.com/privatenumber/tsx/commit/70e78284837c859f09b96cd10cd71d007aa4b795"><code>70e7828</code></a> test: upgrade tinyspy for disposable API</li> <li><a href="https://github.com/privatenumber/tsx/commit/9ed2022dfa9ea1be9511fe6abcde8110c25055a7"><code>9ed2022</code></a> ci: avoid duplicate release notifications</li> <li><a href="https://github.com/privatenumber/tsx/commit/872e77ffc5e96ca5c4727e74c0694debcb26219b"><code>872e77f</code></a> refactor: use disposables for cleanup</li> <li><a href="https://github.com/privatenumber/tsx/commit/6e5236b065738d3687a06396d064774cfede390f"><code>6e5236b</code></a> fix: restore the CJS bridge namespace for Node 24 require(esm) under tsImport...</li> <li><a href="https://github.com/privatenumber/tsx/commit/28e1f12d04cd2afe1db17f8555b14fe5fb567c6e"><code>28e1f12</code></a> fix(cache): bound shared transform cache memory (<a href="https://redirect.github.com/privatenumber/tsx/issues/835">#835</a>)</li> <li>See full diff in <a href="https://github.com/privatenumber/tsx/compare/v4.23.12...v4.23.15">compare view</a></li> </ul> </details> <br /> Signed-off-by: dependabot[bot] <support@github.com> Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>	2026-10-02 08:39:37 -07:00
Nicky LeachandPaperclip	b2c565038b	test(shared): make the worktree port registry lock suite deterministic (#12798 ) ## Thinking Path > - Paperclip is the open source app people use to manage AI agents for work > - Shared worktree services use lock leases and worker-thread heartbeats > - The lock test suite measured wall-clock timing across two threads > - Processor contention allowed a heartbeat tick to change the value during an assertion > - This pull request removes that timing race and restores a regression guard > - The benefit is a stable test suite that still detects slow heartbeats ## Linked Issues or Issue Description What happened? The worktree port registry lock suite failed at random under continuous-integration processor contention. The failure reported a fresh timestamp where the test expected an old timestamp. Expected behavior The suite must pass when the heartbeat runs at its supported interval. It must also fail when the heartbeat interval regresses. Steps to reproduce 1. Run `npx vitest run src/worktree-port-registry.test.ts` in `packages/shared`. 2. Repeat the run under bounded processor contention. 3. Set the heartbeat interval to 3000 ms and run the asynchronous critical-section test. Paperclip version or commit `a661caf74e704f7700a8b8a1e79b76ebd04e3483` Deployment mode Built from source. Installation method Built from source. Agent adapter(s) involved Not adapter-specific (core test). Database mode Not database-related. Additional context Related open pull requests are #11994, #11985, and #11922. This pull request keeps all five tests active and does not use `skip`, `skipIf`, or `todo`. ## What Changed - Build the fallback-probe lock state by hand so no live heartbeat changes the timestamp during the assertion. - Count distinct heartbeat refreshes in the asynchronous critical-section test. - Close the fake probe and settle the pending lock attempt in a `finally` block. - Keep production code unchanged. ## Verification - `npx vitest run src/worktree-port-registry.test.ts` — 5 of 5 tests pass. - `npx vitest run` — 72 files and 704 tests pass at submit time. - `npx tsc --noEmit` — exit code 0. - Ten target-file runs pass under bounded processor contention. - A 3000 ms heartbeat interval fails with `expected 2 to be greater than or equal to 3`. - An inverted cleanup assertion exits normally in 379 ms without a leaked worker. ## Risks Low risk. This pull request changes one test file. It changes test setup and assertions only. ## Model Used OpenAI GPT-5 through Codex. Exact model ID: GPT-5. The model used tool calls and code execution. The context window is not disclosed by the runtime. ## Checklist - [x] I have included a thinking path that traces from project context to this change - [x] I have specified the model used (with version and capability details) - [x] I have checked ROADMAP.md and confirmed this PR does not duplicate planned core work - [x] I have searched GitHub for duplicate or related PRs and linked them above - [x] I have either (a) linked existing issues with `Fixes: #` / `Closes: #` / `Refs: #` OR (b) described the issue in-PR following the relevant issue template - [x] I have not referenced internal/instance-local Paperclip issues or links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip` URLs) - [x] My branch name describes the change (e.g. `docs/...`, `fix/...`) and contains no internal Paperclip ticket id or instance-derived details - [x] I have run tests locally and they pass - [x] I have added or updated tests where applicable - [x] I have updated relevant documentation to reflect my changes - [x] I have considered and documented any risks above - [x] All Paperclip CI gates are green - [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups - [x] I will address all Greptile and reviewer comments before requesting merge --------- Co-authored-by: Paperclip <noreply@paperclip.ing>	2026-10-02 08:24:00 -07:00
Nicky LeachandPaperclip	9d0f7e2ddd	fix(adapter-utils): make the directory merge lock crash test deterministic (#14881 ) ## Thinking Path > - Paperclip is the open source app people use to manage AI agents for work > - A workspace restore merges a directory, and a cross-process lock serializes that merge > - The lock must recover after the process that holds it crashes > - One test proves that recovery: it kills the holder process and then acquires the lock > - That test failed intermittently for two independent reasons, and this pull request removes both > - First, it spawned the holder through the tsx command-line entry point, which re-spawns the evaluated code in a further child process, so the kill signal reached only the wrapper and the real holder kept the lock > - Second, it replaced the global clock to force a timeout, which left the acquisition with zero real retries, so a single transient busy result failed the test > - The benefit is a deterministic crash-recovery test and a reliable continuous-integration signal ## Linked Issues or Issue Description What happened? The test `recovers a killed holder even when its recorded PID has been reused` in `packages/adapter-utils/src/directory-merge-lock.test.ts` failed intermittently in continuous integration. The failure reported `ERR_WORKSPACE_RESTORE_LOCK_TIMEOUT` with `waitMs: 3` and `knownLocalHolder: false`. A rerun of the same job on the same commit passed. Expected behavior The test must pass every run. It must acquire the lock after the holder process dies. Steps to reproduce 1. Check out `master`. 2. Run `npx vitest run packages/adapter-utils/src/directory-merge-lock.test.ts`. 3. Repeat the run. The named test fails intermittently. Paperclip version or commit `32e9f3ba0ec000578936731990d23bb0e77493fa` Deployment mode Built from source. The failure appears in the general test job of continuous integration. Agent adapter(s) involved Not adapter-specific (core bug). Relevant logs or output ``` ERR_WORKSPACE_RESTORE_LOCK_TIMEOUT workspaceRestoreLock: { ownerState: 'alive', knownLocalHolder: false, waitMs: 3, ownerSameProcess: true, ownerAgeMs: 60030, ownerPredatesProcess: true } ``` ## What Changed The test file had two independent defects. This pull request removes both. 1. The kill signal did not reach the real lock holder. The test spawned its holder through the tsx command-line entry point. That entry point re-spawns the evaluated code in a further child process. `SIGKILL` therefore killed only the wrapper, and the process that had opened the lock database survived as an orphan that still held the lock. The test now loads tsx as an `--import` hook, so the spawned process is the real holder and the kill releases the lock at once. This also stops the test from leaking an orphan process. 2. The forced clock left the acquisition with zero retries. A test helper replaced `Date.now` to force a timeout. The implementation reads `Date.now()` one time, to compute its deadline, so that single read consumed the forced value and every later read returned a time already past the deadline. The retry loop therefore got one attempt and no retries. That is correct for a test that asserts a timeout, but the crash-recovery test asserts a successful acquisition, so any transient busy result on the first attempt failed it. The fix removes the clock replacement from the whole file and gives each test a real, short, explicit wait budget: - `withDirectoryMergeLock` takes a new optional wait-budget parameter. It threads through to the lock acquisition function. The production default is the existing 30-second budget, and no production call site changed. - The five tests that assert a timeout pass a real 200-millisecond budget. Each one still times out for the real reason, because the lock is genuinely held or the legacy lock directory genuinely exists. Each one now exercises at least four real retries of the 50-millisecond retry interval. - The crash-recovery test passes a real 5-second budget. A failure now reports the structured `ERR_WORKSPACE_RESTORE_LOCK_TIMEOUT` diagnostic well inside the test timeout, instead of a bare test timeout. No test timeout increased. Every `it(..., N)` timeout in the file equals its value on `master`. ## Verification - Measured the first cause rather than assumed it: the spawned wrapper process reported one process id, and the process that opened the lock database reported a different process id and named the wrapper as its parent. The real holder kept the lock for about 50 to 60 milliseconds after the kill. - Reproduced the failure deterministically before the change, with no artificial processor load: 15 of 15 runs failed. Confirmed the fix: 15 of 15 runs passed. - Ran the lock test file 15 times in series: 12 of 12 tests passed every time. - Confirmed the clock replacement is gone: a search for a `Date.now` override in the file returns nothing. - Confirmed the production default is unchanged at 30 seconds, and that the diff touches no production call site. - Proved the diagnostic still surfaces: with a temporary edit that held the lock with a genuine live holder, the test failed with `ERR_WORKSPACE_RESTORE_LOCK_TIMEOUT` and the full `workspaceRestoreLock` block at about 5 seconds, inside the 15-second test timeout. The temporary edit was reverted. - `workspace-restore-merge.test.ts` passed 56 of 56. The adapter test files that cover every production caller passed 116 of 116 and 52 of 52. `agent-directory-working-copies.test.ts` passed 70 of 70. - The `adapter-utils` and `server` type-checks passed with no error. - Confirmed that no spawned process survives the test run. ## Risks Low risk. The production change is one optional parameter with the existing default, so every production caller keeps the real 30-second budget and no production call site changed. The remaining change is limited to one test file. The `--import` form of the tsx hook is already used elsewhere in this repository, in the container image command and in an end-to-end test configuration. Test coverage does not drop: the owner record is diagnostic only, the SQLite reserved lock remains the authority that the tests exercise, and the timeout-asserting tests now exercise the real retry loop instead of a replaced clock. The file costs about 0.5 to 0.9 seconds more wall clock than `master`, which is the cost of the short real waits that replace the instant forced timeout. ## Model Used Claude Sonnet 5 (`claude-sonnet-5`), used with extended thinking and tool use for the diagnosis, the measurement, and the change. ## Checklist Check every box that the state of the pull request satisfies. The local test runs and the type checks are complete. Reconcile the continuous-integration and review boxes after the checks reach their terminal state. ## Test plan - [x] Continuous integration is green on every check, including the general test job. - [x] The general test job passes the file `packages/adapter-utils/src/directory-merge-lock.test.ts`. - [x] Greptile returns 5 of 5 with no open item. - [x] `mergeable: MERGEABLE` is terminal. --------- Co-authored-by: Paperclip <noreply@paperclip.ing>	2026-10-02 08:17:03 -07:00
DottaandPaperclip	6c1a75da49	feat(connections): make AgentMail a default connection with inline setup (#14772 ) ## Thinking Path > - Paperclip is the open source app people use to manage AI agents for work. > - Connections give agents access to external services. > - AgentMail needs both a saved key and an inbox assigned to the agent. > - Chat requests offered a setup link instead of an inline card and could treat a saved key as complete. > - Inbox setup also hid address conflicts behind a generic server error and a separate review step. > - This pull request makes AgentMail a default connection, adds the inline card, reduces setup to two steps, and shows conflicts beside the address. > - Shared native dropdown styles also give every caret a consistent inset. ## Linked Issues or Issue Description What happened? AgentMail requests in chat did not show a usable inline connection card. Manual setup required extra screens, ignored saved account keys, and could trap new-address setup in a locked inbox dropdown. Agent selectors omitted the avatar from the selected value. A taken address could produce an HTTP 403 from AgentMail and appear as an internal server error. Native dropdown arrows also touched the right edge of their fields. Expected behavior Make AgentMail available as a default connection. Ask for the API key inline, with a direct link to its provider page. Default human access to the company and agent access to the requesting agent. Resume the agent only after an assigned inbox is active. Manual setup should ask for an agent and email address, then finish. Address checks should run as the user types. Taken addresses should show clickable alternatives. A domain dropdown beside the name should prefer a verified custom domain. Setup should suggest authorized saved AgentMail keys and show agent avatars in the picker and selected value. Steps to reproduce 1. Ask an agent to connect AgentMail when it has no assigned inbox. 2. Check that an inline API-key card appears and links to the provider's API-key page. 3. Open AgentMail setup, choose an agent, and request an address that is already taken. 4. Correct the inline error, refresh, and finish setup with the same request ID. 5. Inspect native dropdown carets in light, dark, disabled, and right-to-left states. Uses the bounded provider-error parser merged in #14768. Related work: #13256 introduced AgentMail; #14725 expanded connection search. ## What Changed - Stop recurring email queries for tasks that have no email thread. Share the query between the thread provider and activity view. Keep email-task updates and invalidation-based discovery. - Make AgentMail available without the experimental chat setting. Keep the catalog, setup and management routes, agent Channels tab, task email feed, receiving worker, and agent tools available by default. Other experimental chat providers stay gated. - Make the email address and copy icon a single clickable action with the shared Copied! confirmation. Add View inbox linking directly to the matching AgentMail console inbox, with the address encoded as one URL path segment. - Reorganize inbox Settings around the copyable email address, usage instructions, and receiving status. Move reconnect credentials into a disclosure and separate the Disconnect action. Add production Settings stories for active, paused, unassigned-address, revoked, webhook, long-address, mobile, and reconnect states. Show repair controls when the inbox has an error. Keep usage instructions tied to an active inbox with an address. - Add AgentMail channel intents and an inline key field with the direct API-key URL. - Keep setup and retry state tied to the interaction. Require an active inbox for completion. Preserve company and agent access checks. - Reduce manual setup to agent selection and email selection. Put the domain dropdown beside the address and default to a verified custom domain. Preserve explicit choices across reloads. Keep receiving settings under Advanced options. - Check the initial address and edits after a 350 ms pause. Abort superseded requests and ignore stale responses. Show clickable suggestions and retain known creation conflicts across reloads. - Add a company-scoped, manager-only address check using the saved credential. Search the visible inbox list instead of fetching an uncreated inbox: live AgentMail retains negative lookups that can break subsequent access-key creation. Unlisted addresses remain unknown; creation is authoritative. - Suggest labeled saved AgentMail keys in both manual setup and the inline card. Filter by company, provider, active credential, and current-user grants on the server. Prefer an account key and preserve the selected key or an explicit new-key choice across refresh. Use verified scope metadata and bounded concurrent checks for legacy keys. Never return secret values. - Catch an inbox-only key before the email step. Allow its existing inbox only after an explicit choice. Recover old locked drafts at the key picker. Save the replacement key before retiring an empty draft, then use a new setup URL so refresh preserves the switched account; stop if cleanup fails. Preserve already allocated addresses and their original accounts. - Use the shared AgentSelect in email setup. Show the canonical agent avatar in each option and the selected value, including other consumers of the shared component. Add regression coverage for legacy and current Lucide agent-mention icon formats. - Start each catalog Add connection with a fresh setup identity. Honor Finish setup's exact draft/account/address instead of resuming an unrelated browser draft. Return Cancel and Done to Connectors and Email settings to the inbox. Group the task/thread explanation in a How it Works card. - Route AgentMail catalog removal through the email inbox control API, including unfinished drafts. Refresh both the catalog and inbox views. - Render each inbox management tab separately. Access uses the saved account grants and agent controls; Conversations and Activity use the shared persisted email feed. Activity lifecycle actions use the email API. Reconnect returns to inbox Settings. Conversation failures show a retry instead of a false empty state. Email delivery recovery stays in the task. - Map documented provider address conflicts to a field error. Preserve actionable messages for other failures. - Preserve non-secret draft fields across refresh, scoped to the requested agent. Never save API keys in browser storage. Resume partial inbox creation with the original agent, address, and request ID. - Show an already-created address with explicit retry and new-address recovery instead of locked inputs. Preserve the original inbox and resumable draft when choosing another address. Distinguish runtime-key 404 errors and log safe provider status/operation/code. - Apply final agent access once within email setup authorization for a new account whose original installs are unchanged. Preserve later permission edits and reused account installs. Support in-place retry of progress loading. - Let a failed inline setup change keys after retiring an empty draft. Persist its replacement setup identity without storing secrets. Recover a server-saved account when refresh interrupts the save response, while preserving intentional account changes. - Render the production setup in Storybook and add error, recovery, and mobile states. - Inset native select carets in shared CSS. Preserve custom icons, listboxes, keyboard behavior, and forced-color controls. - Add browser regression coverage and an AgentMail Product E2E case with persisted-state and rendered-card evidence. ## Verification - Full `pnpm -r typecheck`, `pnpm build`, `pnpm check:token-gates`, and `git diff --check` passed after the default-availability change. - All 485 focused tests passed. These cover setup, management, catalog and route gates, connection intents, email authorization, Cursor execution, and the OpenAPI contract. All 39 email integration tests run with the experimental chat setting off. - The shared polling change passed four behavioral tests, UI typecheck and build, and token gates. - `tests/e2e/agentmail.spec.ts` passed with the actual server setting off. This full-stack browser test uses simulated provider responses. It covers catalog entry, saved keys, editable address and domain controls, creation, conflicts, retry, all management tabs, clipboard feedback, the provider link, and task email rendering. - In the live local browser, Add connection reached the editable email step with the saved account key. The verified custom domain was selected by default. Both domain choices worked. The existing inbox Settings page remained available. Both active inboxes completed new mail checks with the setting off. No new provider inbox or email message was created for this pass. - Earlier live provider acceptance covered creation on a verified custom domain, Finish connecting on the reported draft, successful mail checks after refresh, and catalog removal of disposable draft and active connections. Clicking the email address copied the exact address and showed Copied!. View inbox opened the same inbox in AgentMail’s console. No email messages were sent. - Production setup and Settings Storybook builds and interactions passed. Settings states include active, paused, unassigned, revoked, webhook, long-address, mobile, and reconnect. Receiving and revoked-access stories had zero accessibility violations. - Full local `pnpm test:run` on an earlier revision completed with 14,709 passing, 87 skipped, and four transient failures. All four failed cases passed in focused reruns without product changes. That serial full local command was not repeated after each follow-up. The latest-head full CI suite is the final test gate. - CI found an obsolete browser assertion that hid every channel when the flag was off. Updated it to keep AgentMail and the Channels surface visible while preserving the GitHub chat route gates. All 11 provider browser tests passed locally after scoping the Channels selector to the agent sidebar. Two initial local attempts stopped at temporary Postgres initialization. The passing run used a separate disposable database on the existing local Postgres server; it was removed after the test. - Updated the remaining sidebar and aggregator discovery assertions for default AgentMail availability. Ordinary task fixtures now return no email thread. All 128 sidebar/task-page tests and all 42 aggregator tests passed locally. - Latest head `b42bb4cd5cc9f2d01a99ab8026832d5a956ea85f`: full CI passed, with 54 successful checks including Snyk and two intentional Storybook skips. The CI run is https://github.com/paperclipai/paperclip/actions/runs/37020833647. A fresh Greptile review scored 5/5 with no unresolved threads. Live model evaluations and inbound/outbound email delivery were not run. ## Risks - AgentMail no longer needs experimental opt-in. Setup still requires a human to connect an account and assign an inbox. Inline setup creates an inbox after a human submits a new or saved key. Company access, agent access, inbox assignment, and completion checks remain enforced. - AgentMail read APIs cannot prove global address availability. The visible-list check is bounded to 100 entries and cannot see inboxes outside the key’s scope. The UI reports this limitation, suggests alternatives without claiming they are free, and keeps final creation conflicts inline. Lookup outages show an error without preventing the authoritative creation attempt. - Native select CSS affects the whole app. Custom-icon selects and multi-row lists are excluded. Forced-color mode keeps the browser caret. - Saved-key discovery uses stored verified scope metadata and checks authorized legacy credentials concurrently within a shared three-second deadline. Provider outages mark legacy choices unavailable; users can still enter another key. Final use rechecks authorization and provider access. - No database migration or transport default change. Live connection remains the default. ## Model Used OpenAI Codex, GPT-6, with reasoning, tool use, and code execution. The exact served model ID and context-window size are not exposed in this session. ## Checklist - [x] I have included a thinking path that traces from project context to this change - [x] I have specified the model used (with version and capability details) - [x] I have checked ROADMAP.md and confirmed this PR does not duplicate planned core work - [x] I have searched GitHub for duplicate or related PRs and linked them above - [x] I have either (a) linked existing issues with `Fixes: #` / `Closes #` / `Refs #` OR (b) described the issue in-PR following the relevant issue template - [x] I have not referenced internal/instance-local Paperclip issues or links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip` URLs) - [x] My branch name describes the change (e.g. `docs/...`, `fix/...`) and contains no internal Paperclip ticket id or instance-derived details - [x] I have run tests locally and they pass (focused suites; full-suite limitation documented above) - [x] I have added or updated tests where applicable - [x] I have updated relevant documentation to reflect my changes - [x] I have considered and documented any risks above - [x] All Paperclip CI gates are green (latest head `b42bb4cd5cc9f2d01a99ab8026832d5a956ea85f`) - [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups (latest head `b42bb4cd5cc9f2d01a99ab8026832d5a956ea85f`) - [x] I will address all Greptile and reviewer comments before requesting merge --------- Co-authored-by: Paperclip <noreply@paperclip.ing>	2026-10-02 10:01:15 -05:00
DottaandPaperclip	ec3bacc9bd	fix(chat): hide ignored provider information (#14929 ) ## Thinking Path > - Paperclip is the open source app people use to manage AI agents for work. > - Task and agent chats show agent progress and problems that need attention. > - Codex also sends account, skill, and unrelated thread notifications. > - The runner correctly ignores that information but reports it as a warning. > - Chat then shows an internal diagnostic as an actionable provider notice. > - This pull request keeps the diagnostic in run logs and removes it from chat. > - Real provider warnings, errors, and agent replies remain visible. ## Linked Issues or Issue Description What happened? Chat showed “Received a provider update” and a warning with the text “ignored unrelated provider information”. Its details said “User Actionable: Yes” even though no user action was needed. Saved conversations retained the same noise. Expected behavior Keep ignored provider information in the run log. Do not show it as chat activity or a user warning. Preserve real warnings and errors. Steps to reproduce 1. Start a conversation with the native Codex runner. 2. Have the provider send an account update, skill change, or unrelated thread notification during the turn. 3. Inspect live chat and reload its saved history. The regression tests also reproduce the old stored notice without a live account. Paperclip version or commit Source implementation on master at `e00d10d5d`. The duplicate search found no open PR for this fix. Related prior work: #13109 improved provider-notice presentation. #12367 added Codex thread normalization. This change addresses the internal information that those paths still projected as chat warnings. Deployment mode Native Paperclip Runner with the Codex app-server provider. The issue was seen in hosted chat and can be reproduced with local provider fixtures. ## What Changed - Map ignored unrelated Codex information to `harness.diagnostic` in the Rust and TypeScript normalizers. - Retain a bounded allowlist of redacted provider method and thread/turn identifiers. - Use the same Unicode character limit and truncation marker in both normalizers. - Share the text redactor through a pure helper. Keep provider connection code out of the standalone demo's source closure. - Omit that diagnostic and the matching legacy notice from live chat. - Omit the matching legacy notice from saved chat history. - Test diagnostic retention, account-notification integration, live and saved chat, and continued visibility of real warnings, errors, and replies. - Document the local run-log event and historical display behavior. ## Verification - Passed: 68 tests in the two affected UI transcript suites. - Passed: 60 TypeScript tests across provider events, transport behavior, and the standalone demo boundary. - Passed: 13 Rust provider-event tests and the Codex account-notification integration test. - Passed: `pnpm check:token-gates` and Cargo formatting checks. - Passed: full `pnpm build` and `pnpm -r typecheck`. After the review fix, the provider package build, typecheck, and both provider-event suites passed again. - Full local `pnpm test:run` failed: 608 files / 10,904 tests passed, 30 server suites failed, and 104 files / 4,012 tests were skipped. Most failures were embedded PostgreSQL startup errors. Two tests timed out in `heartbeat-comment-wake-batching` and `workspace-git-snapshot-streaming`. PostgreSQL startup also failed in `heartbeat-run-event-sequencing` and `native-finalization-migration`. These server files are unchanged by this PR. Isolated heartbeat reruns were skipped locally. The stable test script stopped after this general-server group, so later groups did not run locally. - The original review thread is resolved. Greptile is 5/5 on current head `683dab7cce57187c57e84c83f5e9da4ad75c9c04`. - All current-head CI gates passed, including the full server/chat/workspace test matrix, Rust and TypeScript runner suites, browser E2E, build, typecheck, and release canary. [CI run](https://github.com/paperclipai/paperclip/actions/runs/37021330663). - Replay the exact old warning in either transcript adapter. It must produce no chat row. A genuine provider warning or error must still produce a row. ## Risks - Low risk. The display filter matches one diagnostic code or the complete legacy warning shape. Other provider notices remain visible. - New ignored-information events use the existing harness-diagnostic event type. They retain diagnostic evidence without original account payloads. - No database migration, API permission, provider execution, or recovery behavior changes. This affects the local run log, not Telemetry or OpenTelemetry exports. ## Model Used OpenAI Codex, GPT-6. The exact backend model ID and context-window size are not exposed in this session. Used reasoning, repository inspection, code editing, tool use, and test execution. ## Checklist - [x] I have included a thinking path that traces from project context to this change - [x] I have specified the model used (with version and capability details) - [x] I have checked ROADMAP.md and confirmed this PR does not duplicate planned core work - [x] I have searched GitHub for duplicate or related PRs and linked them above - [x] I have either (a) linked existing issues with `Fixes: #` / `Closes #` / `Refs #` OR (b) described the issue in-PR following the relevant issue template - [x] I have not referenced internal/instance-local Paperclip issues or links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip` URLs) - [x] My branch name describes the change (e.g. `docs/...`, `fix/...`) and contains no internal Paperclip ticket id or instance-derived details - [x] I have run the affected tests locally and they pass (the broad local run has PostgreSQL startup errors and timeouts documented above; the full CI matrix passed) - [x] I have added or updated tests where applicable - [x] I have updated relevant documentation to reflect my changes - [x] I have considered and documented any risks above - [x] All Paperclip CI gates are green - [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups - [x] I will address all Greptile and reviewer comments before requesting merge --------- Co-authored-by: Paperclip <noreply@paperclip.ing>	2026-10-02 09:59:34 -05:00
DottaandPaperclip	e00d10d5d5	fix(connections): repair stale AI defaults from agent settings (#14916 ) ## Thinking Path > - Paperclip manages AI agents and controls the credentials used for their work. > - Managed AI connections resolve each responsible user's provider default. > - Agent settings created another account but kept the old default selected. > - A rejected provider test left the old account marked as connected. > - Claude ACP reported a typed login failure as a generic terminal-access error. > - This pull request repairs the selected account or selects the new login explicitly. > - Agents can save and run with the repaired credential, and failed logins request sign-in. ## Linked Issues or Issue Description - Fixes #14831. - Refs #13867. Environment failures remain separate from credential-health failures. ## What Changed - Add an agent-settings action to reconnect an unavailable personal default in place. Keep its connection, grant, default, and agent access. - State that a new account becomes the user's provider default. Select its returned grant before changing the agent binding. Keep the actual sign-in method. - Show default-update errors and allow retry without another provider login. - Show the agent-access choice. Connection managers start with company-wide access for their own tasks. Other members start with access for the current agent. - Use the server's connection-manager permission in the shared list response. This includes members with a custom management grant. - Mark credentials as needing attention after an explicit login rejection in Test or Save. This includes API-key 401 and 403 responses. Network, quota, and server failures keep the credential health unchanged. - Reuse the credential-generation check so an old failure cannot invalidate a newer reconnect. - Route Claude's typed provider `access` failure to the existing login-recovery flow. Replace its generic terminal-access fallback with a sign-in message. - Add regression tests and update the AI Connections documentation. ## Verification - Red: the UI tests failed on the missing reconnect action, unused returned grant, missing access choice, and lost default-update error. The server tests failed because rejected credentials stayed connected. The real ACP fixture returned `acpx_turn_failed` for typed login failures. - Green: 156 tests passed across the AI connection, hiring, agent field, and New Agent suites. All 37 environment-route tests passed. The Claude ACP authentication fixtures also passed. - `pnpm check:token-gates` passed. - `pnpm -r typecheck` passed. - `pnpm build` passed. - The full local `pnpm test:run` passed 707 files and 14,503 tests, then exited with an agent-conversation timeout and embedded PostgreSQL startup failures in unchanged suites. The isolated conversation and migration tests passed on rerun. Later local test groups did not run after this failure. - [All CI gates passed](https://github.com/paperclipai/paperclip/actions/runs/37012669356) on commit `38513dfe2`. This includes the full test matrix, browser tests, typecheck, build, Runner checks, and canary dry run. - Greptile reviewed commit `38513dfe2` and returned 5/5 with no open findings. - The regression tests use a real embedded database and a real ACP fixture process. Live provider sign-in requires a valid account and was not run. ## Risks - Connecting a new account from agent settings changes the user's provider default. The dialog states this before sign-in. - The displayed access choice can allow all company agents to use the account for its owner's tasks. Reconnect keeps the existing access. Server permissions still control installs. - Claude's typed `access` category maps to the provider's `auth_required` signal. Tool and workspace request failures retain their existing classification. - No database migration or provider credential format changes are required. ## Model Used - OpenAI GPT-6 through Codex. The exact served model identifier and context window are not exposed in this session. Capabilities used: reasoning, repository tools, code editing, and command execution. ## Checklist - [x] I have included a thinking path that traces from project context to this change - [x] I have specified the model used (with version and capability details) - [x] I have checked ROADMAP.md and confirmed this PR does not duplicate planned core work - [x] I have searched GitHub for duplicate or related PRs and linked them above - [x] I have either (a) linked existing issues with `Fixes: #` / `Closes #` / `Refs #` OR (b) described the issue in-PR following the relevant issue template - [x] I have not referenced internal/instance-local Paperclip issues or links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip` URLs) - [x] My branch name describes the change (e.g. `docs/...`, `fix/...`) and contains no internal Paperclip ticket id or instance-derived details - [x] I have run tests locally and they pass - [x] I have added or updated tests where applicable - [x] I have updated relevant documentation to reflect my changes - [x] I have considered and documented any risks above - [x] All Paperclip CI gates are green - [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups - [x] I will address all Greptile and reviewer comments before requesting merge --------- Co-authored-by: Paperclip <noreply@paperclip.ing>	2026-10-02 08:57:52 -05:00
DottaandPaperclip	408f70e69f	fix(runner): preserve stock Codex base instructions (#14920 ) ## Thinking Path > - Paperclip is the open source app people use to manage AI agents for work. > - The native Runner connects Paperclip tasks to Codex app-server. > - Paperclip passed its runtime context as `baseInstructions`. > - That field replaces the stock Codex base prompt. > - This pull request sends the same Paperclip context as additive developer instructions. > - Codex keeps its stock prompt and still receives Paperclip task instructions and tools. ## Linked Issues or Issue Description What happened? The native Codex driver and Rust provider sent Paperclip context through `baseInstructions` on thread start and resume. Codex used this text in place of its stock base instructions. Direct-chat resume also sent an empty replacement base. The Runner Lab session path used the same replacement field. Expected behavior Codex should retain its stock base prompt. Paperclip should add its runtime context through `developerInstructions`. Other provider facades should retain their current instruction handling. Steps to reproduce 1. Create a native Codex session through Paperclip Runner. 2. Inspect the `thread/start` request in the native provider trace. 3. Resume the session and inspect `thread/resume`. 4. Before this fix, these paths set `baseInstructions`. After this fix, the Codex paths set `developerInstructions` and omit `baseInstructions`. Paperclip version or commit Reproduced against master at `cad26c6bfb736039c8ed5743da650a44792a083c`. Deployment mode Built from source. Native Codex app-server and runnerd paths. A local protocol probe used codex-cli 0.153.4 and a localhost Responses stub. No duplicate fix or matching public issue was found in the GitHub search. ## What Changed - Send additive developer instructions on Codex start and resume in the TypeScript driver, Rust provider, and Runner Lab session path. - Carry the additive fragment through runnerd, including runtime asset path mapping. - Preserve existing instruction fields for other provider facades, including OpenCode. - Add start/resume/direct-chat regression coverage and check the actual Rust provider request. - Document the historical option and trace field names. Record progress and follow-ups in the working checklist. ## Verification - `pnpm -r typecheck` — passed. - `pnpm build` — passed. - Targeted Codex driver lifecycle, driver, and live-session Vitest suites — 139 tests passed. - `cargo test --manifest-path packages/paperclip-runner/runner/Cargo.toml --locked -p paperclip-runner-core --test codex_provider` — 91 passed, 2 ignored subprocess helpers. - Real app-server probe: a localhost Responses stub captured identical 14,732-character stock base instructions on fresh start and cold resume. Both requests retained the Paperclip marker in developer input. Both stub turns completed. No paid inference was used. - Runnerd transport Vitest suite — 182 tests passed. - The initial `pnpm test:run` attempt reported local dependency-loading, embedded PostgreSQL startup, and macOS `/var` versus `/private/var` path failures. It was stopped after those failures. Loading-suite reruns passed 1,428 tests after the build; native interaction/finalization reruns passed 38 tests. A seven-suite diagnostic rerun passed 463 tests and isolated the remaining path and PostgreSQL setup failures. - With `TMPDIR=/private/tmp`, workspace, gateway, interaction, and attachment suites passed all 356 tests. The remaining environment-image and native-session-resumption suites passed all 44 tests with the same canonical temp path. All affected suites passed on rerun. The original full local command was stopped after failures and is not claimed as passing. - All 55 PR checks passed at `83281439456181396f3707eecda5d2ebc90bd14d`. Greptile scored 5/5 with no open review threads. - No paid live campaign or Product E2E browser suite was run. This change has protocol and regression coverage; it does not claim improved task quality. ## Risks - Stock Codex behavior may differ from behavior under the previous Paperclip replacement prompt. Restoring that behavior is the intended change. - Existing Codex threads retain their saved replacement base prompt. They need a provider session reset to receive the stock base. This PR does not reset active sessions or alter recovery rules. - The legacy `baseInstructions` option and trace field names remain for compatibility. They now describe the additive Paperclip fragment for Codex. - The separate Codex-through-ACP dependency patch remains a follow-up in the harness coverage checklist. This PR covers native app-server execution. ## Model Used OpenAI Codex, GPT-6. The exact runtime model variant and context window are not exposed in this session. Used reasoning, repository inspection, code editing, shell execution, and test tools. ## Checklist - [x] I have included a thinking path that traces from project context to this change - [x] I have specified the model used (with version and capability details) - [x] I have checked ROADMAP.md and confirmed this PR does not duplicate planned core work - [x] I have searched GitHub for duplicate or related PRs and linked them above - [x] I have either (a) linked existing issues with `Fixes: #` / `Closes #` / `Refs #` OR (b) described the issue in-PR following the relevant issue template - [x] I have not referenced internal/instance-local Paperclip issues or links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip` URLs) - [x] My branch name describes the change (e.g. `docs/...`, `fix/...`) and contains no internal Paperclip ticket id or instance-derived details - [x] I have run tests locally and they pass - [x] I have added or updated tests where applicable - [x] I have updated relevant documentation to reflect my changes - [x] I have considered and documented any risks above - [x] All Paperclip CI gates are green - [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups - [x] I will address all Greptile and reviewer comments before requesting merge --------- Co-authored-by: Paperclip <noreply@paperclip.ing>	2026-10-02 08:53:47 -05:00
Michael Nguyen Claude Opus 5.5 Dotta Paperclip	cad26c6bfb	fix(tool-gateway): bound MCP discovery memory and concurrency (#14864 ) ## Thinking Path > - Paperclip is the open source app people use to manage AI agents for work. > - Agents discover governed tools through the MCP gateway. > - A listing repeated policy and full run-row reads for each catalog tool. > - Parallel listings multiplied those allocations during run startup. > - One 900-tool baseline listing used 11,489 queries and about 1.7 GiB of extra heap in a fixture. > - This pull request shares reads within a listing and bounds whole listings across the process. > - The benefit is lower discovery memory use while execution still checks current policy. ## Linked Issues or Issue Description Refs #13115. Its on-demand target change affects the same listing loop. What happened? MCP discovery repeated roughly 13 reads per tool. Full run snapshots and repeated connection configurations caused large allocations. Per-listing bounds alone did not limit concurrent listings across gateways. Expected behavior Discovery reads shared inputs once per listing. The process bounds active and queued listings. Catalog payload size and policy evaluation still grow with the catalog. Tool execution checks current access rules. Steps to reproduce Create a company with a remote MCP connection, 900 catalog tools, large schemas, and a large run snapshot. Send concurrent tools/list requests using a run-bound gateway token. Run the committed benchmark for a deterministic reproduction. Paperclip version or commit Baseline: `f2e0f19630`. Measured on Node 26.4.0 on macOS. ## What Changed - Keep Michael Nguyen's per-listing policy cache, scalar policy reads, 16-decision bound, and catalog/connection split under repeatable read. - Admit two whole listings per process and queue at most 32. Return 503 with tool_discovery_busy when full. - Propagate disconnects to discovery. Stop scheduling new reads and drain started reads before freeing the slot. - Project context IDs in gateway authentication and GitHub runtime discovery. Avoid loading task descriptions and results. - Keep discovery audit counts and a SHA-256 digest instead of the full name list. Retain access and activity audit records. - Sweep expired named gateway tokens at startup and on the existing scheduler. Delete at most 500 per pass. Add an idempotent expiry-index migration. Resolve audit token references atomically so cleanup cannot break admitted requests. - Return GET 405 with Allow: POST on stateless MCP gateway and runtime-tools endpoints. Keep runtime-tools authentication. - Add red-green regressions, HTTP concurrency and policy-revocation coverage, and browser approval assertions. - Commit the benchmark harness, raw results, and resource-bound documentation. ## Verification - Baseline listing regressions failed with 722 queries for 50 tools and 6,422 for 500. The connection-row duplication regression also failed. - Follow-up regressions failed before the fixes for full snapshot reads, abandoned listings, full name-list audits, and expired tokens. - Listing and scheduler tests: 14 pass. Existing gateway/policy suites passed after preserving the cleanup return contract. - Two HTTP journeys pass: initialize, GET/SSE rejection, 16 concurrent 500-tool listings, provider call, policy revocation, and denied retry. Token cleanup during provider dispatch also completes successfully and blocks subsequent requests. - pnpm test:e2e tests/e2e/mcp-user-stories.spec.ts --grep '@mcp-runnable': 8 pass. The approval journey clicks Allow once in the browser. Review screenshots wait for loaded content. - pnpm -r typecheck: passes. pnpm build: passes. - The general server group completed with 14,755 passes and 18 failures. The 17 startup mock failures were fixed; all 21 startup tests pass on rerun. The one Discord timing failure passed on the unchanged baseline and on rerun (74 tests). UI and CLI groups pass 7,632 tests. Shared and skill groups pass 853 tests. The remaining database and adapter groups pass 3,010 tests with one worker after a macOS shared-memory limit interrupted a parallel run. All 149 serialized route files pass (2,762 tests). - At 900 tools, one listing falls from 11,489 to 36 queries and from about 1.7 GiB to 37 MiB of extra heap. Sixteen concurrent listings used 169–187 MiB of extra heap. Four connections used 39 queries per listing. - Latest-head verification: 54 successful checks and two expected skips on `5c0793090c`. Fresh Greptile review: 5/5 with no unresolved threads. - Reproduce with server/scripts/benchmark-tool-gateway-listing.ts. See doc/mcp-discovery-performance.md and doc/benchmarks/2026-10-01-mcp-discovery.json. ## Risks - The process-wide FIFO queue can increase discovery latency. Excess callers must retry 503 responses. - Cancellation applies to discovery. Started database reads finish before their slot is released. - Audit consumers must use visibleToolCount and visibleToolsHash instead of visibleTools. - The expiry index can briefly lock the token table during migration. Sweeps preserve unexpired and non-expiring tokens. - Measurements use isolated fixtures and deterministic providers. They do not establish a production heap limit or affected installation count. Rate-limit reads remain uncached. ## Model Used - Original listing optimization: Anthropic Claude Opus 5.5 (claude-opus-5-5), Claude Code, extended thinking and tool use, as recorded by the original author. - Follow-up fixes and verification: OpenAI Codex, GPT-6, with shell execution, file edits, database fixtures, and browser tests. The exact serving model ID and context window are not exposed in this session. ## Checklist - [x] I have included a thinking path that traces from project context to this change - [x] I have specified the model used (with version and capability details) - [x] I have checked ROADMAP.md and confirmed this PR does not duplicate planned core work - [x] I have searched GitHub for duplicate or related PRs and linked them above - [x] I have either (a) linked existing issues with Fixes / Closes / Refs OR (b) described the issue in-PR following the relevant issue template - [x] I have not referenced internal/instance-local Paperclip issues or links - [x] My branch name describes the change and contains no internal Paperclip ticket id or instance-derived details - [x] I have run tests locally and they pass - [x] I have added or updated tests where applicable - [x] I have updated relevant documentation to reflect my changes - [x] I have considered and documented any risks above - [x] All Paperclip CI gates are green - [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups - [x] I will address all Greptile and reviewer comments before requesting merge --------- Co-authored-by: Claude Opus 5.5 <noreply@anthropic.com> Co-authored-by: Dotta <bippadotta@protonmail.com> Co-authored-by: Paperclip <noreply@paperclip.ing>	2026-10-02 07:45:27 -05:00
Devin FoleyandPaperclip	4e52463203	fix(daytona): recover output from stalled log streams (#14889 ) ## Thinking Path > - Paperclip is the open source app people use to manage AI agents for work. > - The Daytona driver streams sandbox command output to the host. > - A log socket can stop delivering bytes without closing or rejecting. > - Missing permission requests and cancellation results can leave a run active and block queued work. > - This pull request switches an idle log stream to saved-output polling for the same command. > - The host can receive the missing output without another command dispatch. ## Linked Issues or Issue Description What happened? The driver waits for the SDK log-stream promise before it can start recovery. If that promise never settles, the host can miss new output that is already in the provider's saved logs. A run can remain active after a watch completes. Interrupt can then time out with “Execution is still stopping; termination has not been verified.” Expected behavior Recover command observation when the live stream stalls. Forward new permission requests and cancellation results. Require a recorded command exit before reporting completion. Keep quiet commands running under the caller's existing lifetime controls. Steps to reproduce 1. Start a session command and leave the callback log promise pending. 2. Put new output in the snapshot API without invoking the stream callback. 3. Keep the command running until the host receives that output, then expose its cancellation output and exit code. 4. Verify that the host receives each byte once and dispatches the command once. Paperclip version or commit Base commit `479554120d`. Agent adapter(s) involved Daytona session commands, including sandbox ACP agent sessions. Related: #14799 handles closed streams; this change handles sockets that never close. #14485 handles input delivery retries. #13262 adds permission diagnostics. ## What Changed - After 15 seconds with no stdout or stderr, switch directly to the existing status and log-snapshot polling path. - Ignore callbacks and delayed failures from the abandoned stream. Clear its idle timer on every exit path. - Preserve byte-offset deduplication, one command dispatch, and independent timeouts for recovery reads. - Add regressions for an initial stream stall, a stall after UTF-8 output, cancellation output, late callbacks, hung recovery reads, and quiet commands that outlive an operation timeout. - Update the provider documentation and keep hour-long healthy-stream coverage active with periodic output. ## Verification - `pnpm vitest run packages/plugins/sandbox-providers/daytona/src/plugin.test.ts`: 245 passed. - `pnpm exec vitest run --project @paperclipai/plugin-daytona`: 339 passed; 14 gated live tests skipped. - Both new stalled-stream regressions fail on the unchanged base driver because it never starts snapshot recovery. Both pass with this change. - `pnpm -r typecheck`: passed. - `pnpm build`: passed. - `pnpm test:run`: the local run did not pass. It was stopped after confirmed local skill-path and macOS skill-cache failures, once complete PR CI was green. Four chat/email tests could not load connector skill files from an ancestor directory outside the checkout. Three company-skills tests hit macOS `EACCES` during cache publication. One unrelated wakeup test timed out in the full run and passed on a focused rerun (`1 passed`, `27 skipped`). No source or test assertions were changed for these failures. This is not a complete local-suite pass. - Complete PR CI on `11ac4e030b`: 53 successful checks, 2 expected skips, no pending or failed checks. The clean CI run includes the full test suite. - Greptile reviewed `11ac4e030b` at 5/5 with no findings or unresolved threads. The branch has no merge conflicts with `master`. - `git diff --check` and a local scan for secrets and private identifiers passed. ## Risks - Quiet healthy commands also switch to polling. Full snapshots can increase bandwidth as output grows; polling remains limited to one snapshot per second. - The SDK exposes no stream cancellation handle. The old socket remains owned by session teardown, and its callbacks cannot publish after fallback. - This change recovers a stalled output stream. It does not claim to identify every cause of an unanswered permission request or change the requirement to verify termination before releasing work. - No schema migration or command replay. ## Model Used OpenAI GPT-6 through Codex, with tool use and code execution. The exact serving model ID and context window are not exposed in this session. ## Checklist - [x] I have included a thinking path that traces from project context to this change - [x] I have specified the model used (with version and capability details) - [x] I have checked ROADMAP.md and confirmed this PR does not duplicate planned core work - [x] I have searched GitHub for duplicate or related PRs and linked them above - [x] I have either (a) linked existing issues with `Fixes: #` / `Closes: #` / `Refs: #` OR (b) described the issue in-PR following the relevant issue template - [x] I have not referenced internal/instance-local Paperclip issues or links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip` URLs) - [x] My branch name describes the change (e.g. `docs/...`, `fix/...`) and contains no internal Paperclip ticket id or instance-derived details - [x] I have run local change-specific tests; the full suite passes in CI, with local-suite limitations documented above - [x] I have added or updated tests where applicable - [x] I have updated relevant documentation to reflect my changes - [x] I have considered and documented any risks above - [x] All Paperclip CI gates are green - [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups - [x] I will address all Greptile and reviewer comments before requesting merge Co-authored-by: Paperclip <noreply@paperclip.ing>	2026-10-01 21:04:41 -07:00
dependabot[bot]	c9cde69299	build(deps): bump @anthropic-ai/sdk from 0.121.0 to 0.129.0 (#13386 ) Bumps [@anthropic-ai/sdk](https://github.com/anthropics/anthropic-sdk-typescript) from 0.121.0 to 0.129.0. <details> <summary>Release notes</summary> <p><em>Sourced from <a href="https://github.com/anthropics/anthropic-sdk-typescript/releases">@anthropic-ai/sdk's releases</a>.</em></p> <blockquote> <h2>sdk: v0.129.0</h2> <h2>0.129.0 (2026-09-28)</h2> <p>Full Changelog: <a href="https://github.com/anthropics/anthropic-sdk-typescript/compare/sdk-v0.128.0...sdk-v0.129.0">sdk-v0.128.0...sdk-v0.129.0</a></p> <h3>Features</h3> <ul> <li><strong>api:</strong> add between_tools thinking type (<a href="https://github.com/anthropics/anthropic-sdk-typescript/commit/ab51075609a2d583dffdca24856f4214779d9e7f">ab51075</a>)</li> <li><strong>api:</strong> add claude-sonnet-5-5 (<a href="https://github.com/anthropics/anthropic-sdk-typescript/commit/4e7736625fd23a5607800e8de4aa3c37daa74a07">4e77366</a>)</li> <li><strong>api:</strong> add ClientToolUnion type for client-executed tools (<a href="https://github.com/anthropics/anthropic-sdk-typescript/commit/2c1d2d712071a5f10d2e70ea02dc33425b087799">2c1d2d7</a>)</li> <li><strong>api:</strong> add include_inherited and source to workspace rate limits (<a href="https://github.com/anthropics/anthropic-sdk-typescript/commit/66e925e54ff3435a56f51f687641728b94aff306">66e925e</a>)</li> <li><strong>api:</strong> add typed event type values to the Managed Agents events list filter (<a href="https://github.com/anthropics/anthropic-sdk-typescript/commit/8ac4a26809418453b64fee79f8ec790d32d1f92c">8ac4a26</a>)</li> <li><strong>api:</strong> cache diagnostics GA — diagnostics on Message / MessageCreateParams (<a href="https://github.com/anthropics/anthropic-sdk-typescript/commit/5ba5f29696d520f68a794936eff7337dce83ac05">5ba5f29</a>)</li> <li><strong>tools:</strong> optionally start tool calls while the reply streams (<a href="https://github.com/anthropics/anthropic-sdk-typescript/commit/083969beadb360b9c4b329ee2541f67bd78d9caf">083969b</a>)</li> </ul> <h3>Bug Fixes</h3> <ul> <li><strong>client:</strong> also send X-Stainless-Timeout for client-level timeouts (<a href="https://github.com/anthropics/anthropic-sdk-typescript/commit/b84783b6ee03eed519d622ea1e477cf8eb3863bf">b84783b</a>)</li> <li><strong>client:</strong> send upload filenames as given, with no placeholder (<a href="https://github.com/anthropics/anthropic-sdk-typescript/commit/f9d3e980b1b498c1c452300a205811f6a56de69b">f9d3e98</a>)</li> <li><strong>helpers:</strong> degrade between_tools thinking to disabled on fallback hops (<a href="https://redirect.github.com/anthropics/anthropic-sdk-typescript/issues/841">#841</a>) (<a href="https://github.com/anthropics/anthropic-sdk-typescript/commit/edbbf05a62ffe2c95c13810f6d7a0a2796786e5f">edbbf05</a>)</li> <li><strong>internal:</strong> let bundlers drop unused classes with more than ten private-member assignments (<a href="https://github.com/anthropics/anthropic-sdk-typescript/commit/67c7adbe5ebae805631e104b341d932a1554bda8">67c7adb</a>)</li> <li><strong>streaming:</strong> show every complete array item and hold back unfinished numbers in partial tool input (<a href="https://redirect.github.com/anthropics/anthropic-sdk-typescript/issues/781">#781</a>) (<a href="https://github.com/anthropics/anthropic-sdk-typescript/commit/58065889d6b112db6da5127484e0a24025e3fa37">5806588</a>)</li> </ul> <h3>Performance Improvements</h3> <ul> <li><strong>streaming:</strong> drop the redundant iterSSEChunks layer (<a href="https://github.com/anthropics/anthropic-sdk-typescript/commit/0357f812dab273c0780c558606663a03e93e34df">0357f81</a>)</li> <li><strong>streaming:</strong> take each string token as one slice in the partial JSON tokenizer (<a href="https://redirect.github.com/anthropics/anthropic-sdk-typescript/issues/255">#255</a>) (<a href="https://github.com/anthropics/anthropic-sdk-typescript/commit/cdfb1e55afebe1c3be50401ca56bebf0ff009a4e">cdfb1e5</a>)</li> </ul> <h3>Chores</h3> <ul> <li><strong>api:</strong> deprecate the betas param on GA models and completions methods (<a href="https://github.com/anthropics/anthropic-sdk-typescript/commit/5c74e4532bb69f22afa3e08013645ac059440aef">5c74e45</a>)</li> <li><strong>api:</strong> list the known model ids first in the Model types (<a href="https://github.com/anthropics/anthropic-sdk-typescript/commit/94528226386311c3ade468cbdea0326c06a1e53d">9452822</a>)</li> <li><strong>ci:</strong> choose the CI runner by repository (<a href="https://github.com/anthropics/anthropic-sdk-typescript/commit/33db1ec2e99a415ff98619cf88ddddbf2b7ca7b1">33db1ec</a>)</li> <li><strong>docs:</strong> clarify that stream: true returns the raw event stream (<a href="https://github.com/anthropics/anthropic-sdk-typescript/commit/4286c227c3a605bf04d4f59ffb496f44c102a6ec">4286c22</a>)</li> <li><strong>docs:</strong> make Managed Agents actor descriptions resource-neutral (<a href="https://github.com/anthropics/anthropic-sdk-typescript/commit/15733f98deaae4aee2fba26c1bfe4ee1514c7080">15733f9</a>)</li> <li><strong>docs:</strong> restore the research-preview notice on the Dream type (<a href="https://github.com/anthropics/anthropic-sdk-typescript/commit/b32f8baa27c40ad5901531024bae86e0ca046bb5">b32f8ba</a>)</li> <li><strong>internal:</strong> move old constants around (<a href="https://github.com/anthropics/anthropic-sdk-typescript/commit/0cd8edfdc6dd91af4ffee4ed3cc7fc8cc22d65e3">0cd8edf</a>)</li> <li><strong>tests:</strong> add diagnostics to the parser test's Message fixtures (<a href="https://github.com/anthropics/anthropic-sdk-typescript/commit/eb5ca58d51ed3309b1f317b20f7d248b036ba76a">eb5ca58</a>)</li> <li><strong>tools:</strong> remove client-side compaction control (<a href="https://redirect.github.com/anthropics/anthropic-sdk-typescript/issues/802">#802</a>) (<a href="https://github.com/anthropics/anthropic-sdk-typescript/commit/9c3e8a5ffa38c35dec32f0258becd360babd5fb1">9c3e8a5</a>)</li> </ul> <h3>Documentation</h3> <ul> <li><strong>api:</strong> prefer each field's own description over its shared type's (<a href="https://github.com/anthropics/anthropic-sdk-typescript/commit/51934782720725acca570edeb0a3a7501ca7dbd8">5193478</a>)</li> <li>expand CLAUDE.md into a full contributor guide (<a href="https://github.com/anthropics/anthropic-sdk-typescript/commit/98d2ddbce7c1eabbabe5a130d18d307c237fb75c">98d2ddb</a>)</li> </ul> <h2>sdk: v0.128.0</h2> <!-- raw HTML omitted --> </blockquote> <p>... (truncated)</p> </details> <details> <summary>Changelog</summary> <p><em>Sourced from <a href="https://github.com/anthropics/anthropic-sdk-typescript/blob/main/CHANGELOG.md">@anthropic-ai/sdk's changelog</a>.</em></p> <blockquote> <h2>0.129.0 (2026-09-28)</h2> <p>Full Changelog: <a href="https://github.com/anthropics/anthropic-sdk-typescript/compare/sdk-v0.128.0...sdk-v0.129.0">sdk-v0.128.0...sdk-v0.129.0</a></p> <h3>Features</h3> <ul> <li><strong>api:</strong> add between_tools thinking type (<a href="https://github.com/anthropics/anthropic-sdk-typescript/commit/ab51075609a2d583dffdca24856f4214779d9e7f">ab51075</a>)</li> <li><strong>api:</strong> add claude-sonnet-5-5 (<a href="https://github.com/anthropics/anthropic-sdk-typescript/commit/4e7736625fd23a5607800e8de4aa3c37daa74a07">4e77366</a>)</li> <li><strong>api:</strong> add ClientToolUnion type for client-executed tools (<a href="https://github.com/anthropics/anthropic-sdk-typescript/commit/2c1d2d712071a5f10d2e70ea02dc33425b087799">2c1d2d7</a>)</li> <li><strong>api:</strong> add include_inherited and source to workspace rate limits (<a href="https://github.com/anthropics/anthropic-sdk-typescript/commit/66e925e54ff3435a56f51f687641728b94aff306">66e925e</a>)</li> <li><strong>api:</strong> add typed event type values to the Managed Agents events list filter (<a href="https://github.com/anthropics/anthropic-sdk-typescript/commit/8ac4a26809418453b64fee79f8ec790d32d1f92c">8ac4a26</a>)</li> <li><strong>api:</strong> cache diagnostics GA — diagnostics on Message / MessageCreateParams (<a href="https://github.com/anthropics/anthropic-sdk-typescript/commit/5ba5f29696d520f68a794936eff7337dce83ac05">5ba5f29</a>)</li> <li><strong>tools:</strong> optionally start tool calls while the reply streams (<a href="https://github.com/anthropics/anthropic-sdk-typescript/commit/083969beadb360b9c4b329ee2541f67bd78d9caf">083969b</a>)</li> </ul> <h3>Bug Fixes</h3> <ul> <li><strong>client:</strong> also send X-Stainless-Timeout for client-level timeouts (<a href="https://github.com/anthropics/anthropic-sdk-typescript/commit/b84783b6ee03eed519d622ea1e477cf8eb3863bf">b84783b</a>)</li> <li><strong>client:</strong> send upload filenames as given, with no placeholder (<a href="https://github.com/anthropics/anthropic-sdk-typescript/commit/f9d3e980b1b498c1c452300a205811f6a56de69b">f9d3e98</a>)</li> <li><strong>helpers:</strong> degrade between_tools thinking to disabled on fallback hops (<a href="https://redirect.github.com/anthropics/anthropic-sdk-typescript/issues/841">#841</a>) (<a href="https://github.com/anthropics/anthropic-sdk-typescript/commit/edbbf05a62ffe2c95c13810f6d7a0a2796786e5f">edbbf05</a>)</li> <li><strong>internal:</strong> let bundlers drop unused classes with more than ten private-member assignments (<a href="https://github.com/anthropics/anthropic-sdk-typescript/commit/67c7adbe5ebae805631e104b341d932a1554bda8">67c7adb</a>)</li> <li><strong>streaming:</strong> show every complete array item and hold back unfinished numbers in partial tool input (<a href="https://redirect.github.com/anthropics/anthropic-sdk-typescript/issues/781">#781</a>) (<a href="https://github.com/anthropics/anthropic-sdk-typescript/commit/58065889d6b112db6da5127484e0a24025e3fa37">5806588</a>)</li> </ul> <h3>Performance Improvements</h3> <ul> <li><strong>streaming:</strong> drop the redundant iterSSEChunks layer (<a href="https://github.com/anthropics/anthropic-sdk-typescript/commit/0357f812dab273c0780c558606663a03e93e34df">0357f81</a>)</li> <li><strong>streaming:</strong> take each string token as one slice in the partial JSON tokenizer (<a href="https://redirect.github.com/anthropics/anthropic-sdk-typescript/issues/255">#255</a>) (<a href="https://github.com/anthropics/anthropic-sdk-typescript/commit/cdfb1e55afebe1c3be50401ca56bebf0ff009a4e">cdfb1e5</a>)</li> </ul> <h3>Chores</h3> <ul> <li><strong>api:</strong> deprecate the betas param on GA models and completions methods (<a href="https://github.com/anthropics/anthropic-sdk-typescript/commit/5c74e4532bb69f22afa3e08013645ac059440aef">5c74e45</a>)</li> <li><strong>api:</strong> list the known model ids first in the Model types (<a href="https://github.com/anthropics/anthropic-sdk-typescript/commit/94528226386311c3ade468cbdea0326c06a1e53d">9452822</a>)</li> <li><strong>ci:</strong> choose the CI runner by repository (<a href="https://github.com/anthropics/anthropic-sdk-typescript/commit/33db1ec2e99a415ff98619cf88ddddbf2b7ca7b1">33db1ec</a>)</li> <li><strong>docs:</strong> clarify that stream: true returns the raw event stream (<a href="https://github.com/anthropics/anthropic-sdk-typescript/commit/4286c227c3a605bf04d4f59ffb496f44c102a6ec">4286c22</a>)</li> <li><strong>docs:</strong> make Managed Agents actor descriptions resource-neutral (<a href="https://github.com/anthropics/anthropic-sdk-typescript/commit/15733f98deaae4aee2fba26c1bfe4ee1514c7080">15733f9</a>)</li> <li><strong>docs:</strong> restore the research-preview notice on the Dream type (<a href="https://github.com/anthropics/anthropic-sdk-typescript/commit/b32f8baa27c40ad5901531024bae86e0ca046bb5">b32f8ba</a>)</li> <li><strong>internal:</strong> move old constants around (<a href="https://github.com/anthropics/anthropic-sdk-typescript/commit/0cd8edfdc6dd91af4ffee4ed3cc7fc8cc22d65e3">0cd8edf</a>)</li> <li><strong>tests:</strong> add diagnostics to the parser test's Message fixtures (<a href="https://github.com/anthropics/anthropic-sdk-typescript/commit/eb5ca58d51ed3309b1f317b20f7d248b036ba76a">eb5ca58</a>)</li> <li><strong>tools:</strong> remove client-side compaction control (<a href="https://redirect.github.com/anthropics/anthropic-sdk-typescript/issues/802">#802</a>) (<a href="https://github.com/anthropics/anthropic-sdk-typescript/commit/9c3e8a5ffa38c35dec32f0258becd360babd5fb1">9c3e8a5</a>)</li> </ul> <h3>Documentation</h3> <ul> <li><strong>api:</strong> prefer each field's own description over its shared type's (<a href="https://github.com/anthropics/anthropic-sdk-typescript/commit/51934782720725acca570edeb0a3a7501ca7dbd8">5193478</a>)</li> <li>expand CLAUDE.md into a full contributor guide (<a href="https://github.com/anthropics/anthropic-sdk-typescript/commit/98d2ddbce7c1eabbabe5a130d18d307c237fb75c">98d2ddb</a>)</li> </ul> <h2>0.128.0 (2026-09-22)</h2> <!-- raw HTML omitted --> </blockquote> <p>... (truncated)</p> </details> <details> <summary>Commits</summary> <ul> <li><a href="https://github.com/anthropics/anthropic-sdk-typescript/commit/bf2058689f845dfb10e59bd9ebeb5cb4e9318a9d"><code>bf20586</code></a> Merge pull request <a href="https://redirect.github.com/anthropics/anthropic-sdk-typescript/issues/1218">#1218</a> from anthropics/release-please--branches--main--chan...</li> <li><a href="https://github.com/anthropics/anthropic-sdk-typescript/commit/da41a5a0e5d6f498f1bb8b71beb5b1e0a2bd1e48"><code>da41a5a</code></a> chore: release main</li> <li><a href="https://github.com/anthropics/anthropic-sdk-typescript/commit/3a79b93f0210a83f8bf9fda91a42b577c9e6b93c"><code>3a79b93</code></a> codegen metadata</li> <li><a href="https://github.com/anthropics/anthropic-sdk-typescript/commit/4e7736625fd23a5607800e8de4aa3c37daa74a07"><code>4e77366</code></a> feat(api): add claude-sonnet-5-5</li> <li><a href="https://github.com/anthropics/anthropic-sdk-typescript/commit/2c1d2d712071a5f10d2e70ea02dc33425b087799"><code>2c1d2d7</code></a> feat(api): add ClientToolUnion type for client-executed tools</li> <li><a href="https://github.com/anthropics/anthropic-sdk-typescript/commit/f9d3e980b1b498c1c452300a205811f6a56de69b"><code>f9d3e98</code></a> fix(client): send upload filenames as given, with no placeholder</li> <li><a href="https://github.com/anthropics/anthropic-sdk-typescript/commit/8ac4a26809418453b64fee79f8ec790d32d1f92c"><code>8ac4a26</code></a> feat(api): add typed event type values to the Managed Agents events list filter</li> <li><a href="https://github.com/anthropics/anthropic-sdk-typescript/commit/083969beadb360b9c4b329ee2541f67bd78d9caf"><code>083969b</code></a> feat(tools): optionally start tool calls while the reply streams</li> <li><a href="https://github.com/anthropics/anthropic-sdk-typescript/commit/9505bf37def4a4ada41c95e4e4fa7fb6b3b3f679"><code>9505bf3</code></a> codegen metadata</li> <li><a href="https://github.com/anthropics/anthropic-sdk-typescript/commit/b84783b6ee03eed519d622ea1e477cf8eb3863bf"><code>b84783b</code></a> fix(client): also send X-Stainless-Timeout for client-level timeouts</li> <li>Additional commits viewable in <a href="https://github.com/anthropics/anthropic-sdk-typescript/compare/sdk-v0.121.0...sdk-v0.129.0">compare view</a></li> </ul> </details> <br /> Signed-off-by: dependabot[bot] <support@github.com> Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>	2026-10-01 15:30:19 -07:00
Devin FoleyandPaperclip	f2e0f19630	Defer agent directory cleanup until stop proof is available (#14866 ) ## Thinking Path > - Paperclip manages agents and their persistent files. > - Each run owns a temporary agent directory and a save receipt. > - Cleanup needs independent proof that the owning process stopped. > - A cleanup call without that proof currently waits for the directory lock anyway. > - A second lock failure can prevent environment release after the run already reported a failed save. > - This change skips cleanup that has no authority and retries unavailable remote copies after exact destruction proof. > - The save failure stays visible. Existing lock owners remain protected. ## Linked Issues or Issue Description Related work: Refs #14787 (lock diagnostics), #14695 (warm instruction ownership), #9667 (stale lock proposal), and #9872 (control-plane ownership proposal). I checked open PRs and issues. This change leaves the shared filesystem lock protocol in place and does not duplicate the warm-retention work in #14695. What happened? Heartbeat cleanup records an explicit unavailable instruction-save warning, then calls directory release before releasing the environment lease. Release can wait for a lock even though the copy has no process-stop proof and cannot be removed. That secondary timeout prevents the following lease-release step. If destruction proof arrives later, the unavailable copy is excluded from both recovery queries. Expected behavior Skip a release that cannot remove anything. Preserve the failed-save receipt and candidate fields. Once exact remote destruction is recorded, recover remote cleanup without running a provider command. Unavailable local copies retain their potentially uncollected edits even if local stop proof arrives later. A blocked cleanup must not prevent cleanup for other agents. Steps to reproduce 1. Prepare an agent directory, report its save unavailable, and leave process-stop proof absent. 2. Hold the shared directory lock and call release. Before this change, release waits and fails although removal is not authorized. 3. Record destruction of the copy's exact remote lease. Before this change, neither recovery sweep selects the unavailable copy. Paperclip version or commit Reproduced against `efc2e6810e9bc0dc8cb412b0e7647c0db9821caa`. Deployment mode Local and remote execution with persistent agent directories. Tests use an isolated embedded PostgreSQL database and fixture transports. ## What Changed - Re-read receipts and skip release before lock acquisition when stop proof is absent, the copy is superseded, or cleanup is complete. Keep the same checks inside the lock. - Recover unavailable remote copies only after exact destruction proof. Preserve their unavailable state, errors, candidate hash, and candidate bytes. Keep unavailable local copies and their uncollected edits unchanged. - Store destruction-only cleanup authority with the stop proof. Later cleanup honors it after a lost database response or restart, including when a transport remains cached. - Defer failed or unproven cleanup with bounded batches and a retry delay. Keep failed cleanup visible in logs and its receipt. - Serialize preparation of an existing run with cleanup. Fresh run preparation keeps its existing admission path. - Cover held locks, receipt scope, delayed proof, batch fairness, lost update responses, cached transports, and concurrent same-run preparation with database regressions. ## Verification - Focused directory, legacy instruction-copy, shared lock, and bounded diagnostic suites: 169 tests passed across four files. - `pnpm -r typecheck`: passed on the final source. - `pnpm build`: passed on the final source. - Completed all selected local `pnpm test:run` groups: 733 general server suites, 149 serialized suites, and 14 workspace projects. There are 13 known macOS `EACCES` failures in the unchanged runtime skill cache tests. Their exact signatures match earlier clean-base results, and the cache source and test blobs match both that base and this PR base (existing fix: #14290). One CLI import test timed out under concurrent load; its full file passed separately (17 tests). Broad coverage began before the review corrections; the final source has the focused 169-test run, typecheck, and build. This is a local verification limit, not a passing full local suite. - `git diff --check` and local Gitleaks plus private-identifier/PII diff scans passed. - Independent review of the final source found no remaining actionable issue. Its 17 targeted tests cover crash recovery, cached transports, same-run preparation, real local edit preservation, proof scope, and batch fairness. The main focused run also covers contained scheduling failures. - Final commit `35a24085f7`: Greptile 5/5 with no recommendations and zero unresolved review threads. - Final commit `35a24085f7`: all 53 checks passed, including Canary Dry Run and the security scan; two visual checks were intentionally skipped. The workspace shard passed on retry after GitHub reported that its first runner lost communication. An earlier Canary runner shut down after the release dry run passed. Neither interruption recorded an application assertion failure; the exact final-head checks are now green. ## Risks - This repairs cleanup ordering and recovery eligibility. It does not repair an ambiguous legacy lock owner or restore unsaved files. Actual collection still fails visibly when its lock cannot be acquired. - An unavailable remote copy is recovered only after exact destruction proof. A stopped but retained environment stays protected; recovery does not execute a command that could restart it. - Unavailable local copies with later stop proof still retain potentially uncollected edits. A general local recollection or reclamation policy remains outside this change. - Existing-run preparation now waits for the same lock as cleanup. The fresh-run path is unchanged. - The cleanup mode is stored in the existing private receipt JSON. No schema migration or public API change is required. - No deployment, task replay, or runtime lock deletion was performed. ## Model Used OpenAI GPT-6 (Codex), with reasoning, repository tools, and test execution. The runtime does not expose a more specific model suffix or context-window size. ## Checklist - [x] I have included a thinking path that traces from project context to this change - [x] I have specified the model used (with version and capability details) - [x] I have checked ROADMAP.md and confirmed this PR does not duplicate planned core work - [x] I have searched GitHub for duplicate or related PRs and linked them above - [x] I have either (a) linked existing issues with `Fixes: #` / `Closes #` OR (b) described the issue in-PR following the relevant issue template - [x] I have not referenced internal/instance-local Paperclip issues or links (only public GitHub references) - [x] My branch name describes the change and contains no internal Paperclip ticket id - [ ] I have run tests locally and they pass - [x] I have added or updated tests where applicable - [x] I have updated relevant documentation to reflect my changes - [x] I have considered and documented any risks above - [x] All Paperclip CI gates are green - [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups - [x] I will address all Greptile and reviewer comments before requesting merge --------- Co-authored-by: Paperclip <noreply@paperclip.ing>	2026-10-01 14:28:47 -07:00
dependabot[bot]	0f9e9be408	build(deps): bump @codemirror/state from 6.7.2 to 6.7.6 (#13391 ) Bumps [@codemirror/state](https://github.com/codemirror/state) from 6.7.2 to 6.7.6. <details> <summary>Commits</summary> <ul> <li>See full diff in <a href="https://github.com/codemirror/state/commits">compare view</a></li> </ul> </details> <br /> Signed-off-by: dependabot[bot] <support@github.com> Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>	2026-10-01 13:45:48 -07:00
dependabot[bot]	e2d4f07207	build(deps): bump googleapis from 176.0.0 to 182.0.0 (#13393 ) Bumps [googleapis](https://github.com/googleapis/google-api-nodejs-client) from 176.0.0 to 182.0.0. <details> <summary>Commits</summary> <ul> <li><a href="https://github.com/googleapis/google-api-nodejs-client/commit/9eb464beb4310053dec5aef4661d6c6fd73051a8"><code>9eb464b</code></a> chore: release main (<a href="https://redirect.github.com/googleapis/google-api-nodejs-client/issues/4023">#4023</a>)</li> <li><a href="https://github.com/googleapis/google-api-nodejs-client/commit/9e3b4655c95fde3c69d2a44496a586e906695734"><code>9e3b465</code></a> feat: regenerate index files</li> <li><a href="https://github.com/googleapis/google-api-nodejs-client/commit/279af87fcf2c4016321bde793a8cefd1a542615d"><code>279af87</code></a> fix(youtubereporting): update the API</li> <li><a href="https://github.com/googleapis/google-api-nodejs-client/commit/b37c22595087460ffc1be63471bb56e3e81675f5"><code>b37c225</code></a> fix(youtubeAnalytics): update the API</li> <li><a href="https://github.com/googleapis/google-api-nodejs-client/commit/512e921970a8556fc20aef5e7766826107018957"><code>512e921</code></a> fix(youtube): update the API</li> <li><a href="https://github.com/googleapis/google-api-nodejs-client/commit/6cd997a07c55c80a3f3070cea06affd0aa3274c9"><code>6cd997a</code></a> fix(workstations): update the API</li> <li><a href="https://github.com/googleapis/google-api-nodejs-client/commit/62d5f7629a9ddd6523b4f4050c955a2063007fce"><code>62d5f76</code></a> fix(workspaceevents): update the API</li> <li><a href="https://github.com/googleapis/google-api-nodejs-client/commit/0d71cd6b01ed41b1dff0a04d85567cfd2a511495"><code>0d71cd6</code></a> feat(workloadmanager): update the API</li> <li><a href="https://github.com/googleapis/google-api-nodejs-client/commit/2c46e13798ba24a8b4d2ad9e92f7995d7dcdd93e"><code>2c46e13</code></a> fix(workflows): update the API</li> <li><a href="https://github.com/googleapis/google-api-nodejs-client/commit/c7b8641390370d9af9b12154e6bf455bc344feaa"><code>c7b8641</code></a> fix(workflowexecutions): update the API</li> <li>Additional commits viewable in <a href="https://github.com/googleapis/google-api-nodejs-client/compare/googleapis-v176.0.0...googleapis-v182.0.0">compare view</a></li> </ul> </details> <br /> Signed-off-by: dependabot[bot] <support@github.com> Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>	2026-10-01 13:16:41 -07:00
Michael NguyenandClaude Opus 5.5	b721d24cac	fix(adapter-utils): retry GitHub broker transport failures before falling back (#14856 ) ## Thinking Path > - Paperclip is the open source app people use to manage AI agents for work > - Agents run `git` and `gh` through a managed launcher. The launcher gets a GitHub credential from the Paperclip control plane > - The launcher sends one request to the credential broker for each command > - If that request fails at the transport level, for example after a 10-second timeout, the launcher continues without managed credentials > - So a slow or restarting control plane removes the managed GitHub identity from that command. Some agents then use other GitHub identities that do not have the necessary permissions > - This pull request retries a failed broker request two more times, with a short backoff, before the launcher gives up > - The benefit is that a short control-plane delay does not remove the managed identity from an agent's GitHub operation ## Linked Issues or Issue Description Refs #14175. That pull request changes the same broker request loop for a different failure: sandbox network denials. The pull request that merges second must rebase. What happened A Codex agent ran `git` and `gh` through the managed launcher while the control plane was under heavy memory pressure. Each command printed `Paperclip: GitHub broker_transport_unavailable; continuing without managed credentials.` The agent then tried to open the pull request through a different GitHub integration. GitHub rejected the request with `403 Resource not accessible by integration`. Expected behavior A short broker delay or a short transport failure must not remove the managed GitHub identity from the command. The launcher must try the broker again before it continues without credentials. Steps to reproduce 1. Set `PAPERCLIP_GITHUB_BROKER_URL` to a closed port. 2. Start a broker on that port after about 300 ms. 3. Run `gh` through the launcher. 4. Before this change, the launcher prints `broker_transport_unavailable` and runs `gh` without the managed token. Version or commit `4ac374103` on master. Commit `3166e93a7` has the same code. Deployment mode Local trusted instance that runs as a launchd service, with `codex_local` agents. ## What Changed - `packages/adapter-utils/src/github-launcher.ts`: the broker request loop now catches transport errors and retries up to two more times, after 0.5 s and then after 1 s. The loop reads the response body inside the retry, so a failed or slow body read is also retried. Busy (409) responses keep their own budget of 30 attempts, separate from transport retries. After the third transport failure, the launcher prints `broker_transport_unavailable` as before. - `packages/adapter-utils/src/github-launcher.test.ts`: two new tests make the broker fail the first request and answer the second. In one, the connection drops before the response. In the other, the connection drops in the middle of the body. Each test checks that `gh` gets the managed token, that the broker receives exactly two requests, and that no `broker_transport_unavailable` message appears. - The existing `broker-offline` test now has a 15-second timeout, because each command now retries twice before it falls back. ## Verification - `npx vitest run packages/adapter-utils/src/github-launcher.test.ts`: 9 of 9 tests pass. - The body-read test fails on the first commit of this pull request and passes with the second commit. - `pnpm --filter @paperclipai/adapter-utils typecheck`: passes. - The existing `broker-offline` test confirms that the launcher still falls back after the retries, and that local Git still works. ## Risks - When the broker is unreachable, each `git` or `gh` command now waits about 1.5 s more before it continues without credentials. When the broker times out, the worst case is about 31.5 s instead of 10 s. - The change only adds retries. It does not change which credentials the launcher accepts or which environment variables it copies. - #14175 changes the same loop. The pull request that merges second needs a small rebase. > For core feature work, check [`ROADMAP.md`](ROADMAP.md) first and discuss it in `#dev` before opening the PR. Feature PRs that overlap with planned core work may need to be redirected — check the roadmap first. See `CONTRIBUTING.md`. ## Model Used - Anthropic Claude Opus 5.5 (`claude-opus-5-5`), used through Claude Code with tool use: shell commands, file edits and test runs. The model wrote the change, the test and this description. The repository owner approved the change before it was made. ## Checklist - [x] I have included a thinking path that traces from project context to this change - [x] I have specified the model used (with version and capability details) - [x] I have checked ROADMAP.md and confirmed this PR does not duplicate planned core work - [x] I have searched GitHub for duplicate or related PRs and linked them above - [x] I have either (a) linked existing issues with `Fixes: #` / `Closes #` / `Refs #` OR (b) described the issue in-PR following the relevant issue template - [x] I have not referenced internal/instance-local Paperclip issues or links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip` URLs) - [x] My branch name describes the change (e.g. `docs/...`, `fix/...`) and contains no internal Paperclip ticket id or instance-derived details - [x] I have run tests locally and they pass — targeted tests and the package typecheck; see Verification - [x] I have added or updated tests where applicable - [ ] I have updated relevant documentation to reflect my changes — no documentation describes the broker retry - [x] I have considered and documented any risks above - [ ] All Paperclip CI gates are green — CI has not run yet - [ ] Greptile is 5/5 with no open P2s, recommendations, or follow-ups — Greptile has not reviewed yet - [x] I will address all Greptile and reviewer comments before requesting merge 🤖 Generated with [Claude Code](https://claude.com/claude-code) --------- Co-authored-by: Claude Opus 5.5 <noreply@anthropic.com>	2026-10-01 12:57:41 -07:00
Devin FoleyandPaperclip	dd9983b894	fix(adapter-utils): release restore locks when a process crashes (#14869 ) ## Thinking Path > - Paperclip is the open source app people use to manage AI agents for work. > - Agent runs restore workspace files and collect instruction-file changes. > - Writers to the same target directory must wait for each other. > - The current lock records a PID, which a new process can reuse after a crash. > - A reused PID can keep an orphaned lock alive and make each later run fail. > - This pull request makes a SQLite file lock decide ownership. The OS releases it when the process exits. > - Later runs can proceed after a crash, and concurrent live writers remain protected. ## Linked Issues or Issue Description Refs #10914. This addresses crash recovery. It does not cancel a stalled operation in a process that is still alive. Related work: #9667, #14787, and #12187. The earlier attempt in #9667 assumes one live server per lock root. This implementation uses an OS-backed lock to support concurrent writers without treating a different process token or an old timestamp as proof of a dead owner. It retains the private lock root and bounded timeout diagnostics from the merged changes. After a process dies while holding a restore lock, a replacement process can reuse its PID. The existing `process.kill(pid, 0)` check then reports a live owner forever. Later runs can complete their model turn but fail during file collection or restore. ## What Changed - Hold a SQLite `BEGIN IMMEDIATE` transaction for each directory write. Use the existing built-in `node:sqlite` dependency. - Keep each lock database on a stable inode. Keep PID and time metadata only for diagnostics. - Retain the 30-second asynchronous wait and existing timeout error code and diagnostic fields. - Fail closed when an old directory lock exists. Document a stopped-writer upgrade and rollback procedure. - Add real child-process tests for crashes, PID reuse, live owners, and connection cleanup. Cover callback failures, independent targets, stable inodes, invalid lock files, and ambiguous legacy records. ## Verification - Before the fix, the crash/PID-reuse test and the live-owner test both failed. Both pass with this change. - `pnpm exec vitest run packages/adapter-utils/src/directory-merge-lock.test.ts packages/adapter-utils/src/workspace-restore-merge.test.ts`: 56 tests passed. - Restore and agent-file working-copy integration tests: 118 tests passed before the additional connection-cleanup test. - `pnpm -r typecheck`: passed. - `pnpm build`: passed. - Full GitHub CI: all checks passed, including Linux workspace tests, server test shards, build, typecheck, and browser tests. - Greptile: 5/5, with no review threads or unresolved comments. - `pnpm test:run`: started locally, then stopped with SIGINT (exit 130) after full CI passed. The local serial run did not complete and is not counted as a full local pass. The completed CI shards provide the full-suite result. ## Risks - Upgrade and rollback require a drain. Stop every old writer that shares an instance root before switching protocols. Old and new versions must not write concurrently. - Existing legacy `.lock/` directories remain blocking. After all writers stop, preserve run evidence and move those directories to an operator scratch directory. The new code does not infer that they are abandoned from PID or age. - Never delete or replace a `.lock.sqlite` file while writers can run. These small files remain after release. - The shared filesystem must support reliable SQLite locking. Broken network-filesystem locking is unsupported. - This change prevents new orphaned ownership. It does not recover file changes lost during earlier failed collections, or interrupt a live operation that stalls. - No application database migration or new native dependency is required. See `doc/workspace-restore-locks.md` for the procedure. ## Model Used OpenAI Codex based on GPT-6, with code execution and repository tools. The exact model variant and context window are not exposed in this session. ## Checklist - [x] I have included a thinking path that traces from project context to this change - [x] I have specified the model used (with version and capability details) - [x] I have checked ROADMAP.md and confirmed this PR does not duplicate planned core work - [x] I have searched GitHub for duplicate or related PRs and linked them above - [x] I have either (a) linked existing issues with `Fixes: #` / `Closes #` / `Refs #` OR (b) described the issue in-PR following the relevant issue template - [x] I have not referenced internal/instance-local Paperclip issues or links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip` URLs) - [x] My branch name describes the change (e.g. `docs/...`, `fix/...`) and contains no internal Paperclip ticket id or instance-derived details - [x] I have run tests locally and they pass (focused regression and integration suites; see the full-suite note above) - [x] I have added or updated tests where applicable - [x] I have updated relevant documentation to reflect my changes - [x] I have considered and documented any risks above - [x] All Paperclip CI gates are green - [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups - [x] I will address all Greptile and reviewer comments before requesting merge Co-authored-by: Paperclip <noreply@paperclip.ing>	2026-10-01 12:14:48 -07:00
DottaandPaperclip	4ac374103f	fix(connections): repair Asana MCP and add shared-app sign-in (#14756 ) ## Thinking Path > - Paperclip is the open source app people use to manage AI agents for work. > - Connections let agents use provider tools through the permission gateway. > - Asana provides an official remote MCP server, but its v2 server requires a registered MCP OAuth app. > - Setup can discover retired v1 endpoints and send a callback that differs from the displayed URL. > - This pull request repairs custom app setup and adds sign-in through Paperclip's shared app. > - Users can choose their own app without enrolling with Paperclip Cloud. > - Agents can use Asana tools after the user connects their account and sets action permissions. ## Linked Issues or Issue Description Related: #14739 supplies the personal credential repair used by resumed Asana setup. No duplicate Asana authentication PR was found. What happened? Asana setup failed even with a user-created app. Root discovery metadata still points at v1. MCP v2 uses the Asana OAuth issuer and requires an MCP app with a client secret. Local setup also displayed a localhost callback while an Origin header could make authorization use a numeric loopback callback. Expected behavior Sign in with Paperclip's app when its broker profile is available. Keep custom MCP app setup available without Cloud enrollment. Use the correct issuer, callback, client credentials, and resource throughout setup. Steps to reproduce 1. Open Asana in the connection catalog. 2. Supply an Asana MCP app's client ID and secret. 3. Start OAuth on a local instance opened with a numeric loopback address, or resume a draft that cached v1 metadata. 4. Observe the wrong discovery endpoint or callback mismatch. Paperclip version or commit Reproduced from `b54b2dc35c`. Rebased onto master at `0829d94af` after the single-screen setup change in #14811. Deployment mode Local development from source. The managed path also supports enrolled self-hosted instances. ## What Changed - Add the `asana.mcp` managed profile and the default Sign in with Asana method. - Use Asana's reviewed v2 protected-resource metadata before cached endpoints. - Require a custom MCP app's client secret and retain saved credentials during setup or reconnect. Repair only the known Asana v1 issuer/resource binding, retaining company and callback checks. - Expose a boolean for the acting user's saved client secret. The form offers secret reuse only when that user has an active grant with the required reference. - Let users select their own app from the enrollment and shared-app-unavailable screens, or from Advanced on the single-screen setup page. - Canonicalize HTTP loopback callbacks even when the request includes an Origin header. - Extend signed broker claims and provider URL validation for Asana. Require refresh credentials on managed authorization. - Document setup, distribution, and shared-app rollout requirements. - Resolve permission-profile name collisions when finishing another account. The live staging test found this after renaming the first Asana connection; OAuth succeeded but profile finalization failed. ## Verification - Final live staging proof used app commit `c6053157c4e42ac017727117b754ae77fa5c45fa` and the real Cloud broker at `767b63835170f664542afd0df99a76615e204b62`. In the embedded browser, default shared sign-in required no client credentials, returned through the central Cloud callback to the tenant, and discovered 39 actions. Get me succeeded through the gateway as the selected QA agent (2.1 seconds). The custom-app connection also returned a real result on this final build (0.9 seconds). - Retried the shared draft that failed during the first staging test. It completed after the profile-name fix, retained the selected agent, and kept the existing custom connection intact. Two database regressions reproduced the collision before the fix and passed afterward. The updated transaction rollback test also passes. - Shared reconnect returned to the same staging connection with 39 actions. Earlier staging checks verified the custom-app fallback when the shared profile was unavailable, saved-secret reuse on reconnect, and Off blocking the action test. Allowed was restored after that check. - Local live-provider checks also repaired a saved Asana v1 issuer/resource binding without reentering the secret and verified that numeric-loopback setup uses the displayed localhost callback. Expiring the local managed access-token timestamp triggered a real Asana refresh and a successful Get me call. These early local broker tests used enrollment/authentication and storage fixtures; the final staging proof used deployed Cloud identity and persistent storage. - The new production app is registered and configured, but production sign-in has not been deployed or verified. Live provider revocation was not run because the existing staging test app is shared with other connections. - After rebasing onto the single-screen setup flow, full `pnpm -r typecheck`, `pnpm build`, and `pnpm check:token-gates` pass. Focused verification passes 365 service and 36 broker-client tests. Broader checks pass all 833 shared-package tests and all 530 connector-page tests. The shared suite uses `TMPDIR=/private/tmp` to avoid macOS temporary-directory symlinks in its canonical-path tests. The UI tests verify the shared-app default and switching to a custom app with its required client secret. - Embedded-browser smoke on the current rebased build verified the shared sign-in default, Advanced → custom app (client ID and secret required), and switching back to Paperclip. Both existing Asana connections remained connected after restart. No new provider authorization was performed during this smoke. - The full local `pnpm test:run` was interrupted when the execution session restarted. Before interruption, it reported one runtime-slot restart test failure. That test passed on an isolated retry after clearing two unused PostgreSQL shared-memory segments. The full local suite did not complete; CI must pass on the current head before merge. - All 52 CI and security checks pass on `9318fd4e9b616cdc3de12f40cdb9bd32d865af4c` (CI run `36882064080`), including all eight browser shards, nine serialized-server shards, build, typecheck, and canary dry run. Two optional Storybook checks were skipped. Greptile review 4 reports 5/5 on this exact commit, with all review threads resolved. Its updated summary identifies the current SHA; this comment-triggered review did not publish a separate GitHub check run. - Provider revocation is unit-tested in the companion broker. Live provider revocation was not run because the existing test app is shared with other connections. ## Risks - The shared Paperclip Asana MCP app has been registered with its production callback and Any workspace distribution. Its secret is provisioned in the production secret store, and the runtime client ID and secret reference are configured. The production profile is enabled in the saved deployment configuration. The companion broker has merged and passed staging deployment; production sign-in still requires a production deployment and live verification. Custom setup remains available. - Asana MCP uses the provider's fixed `default` grant. Paperclip action policies limit agent tool use; they do not narrow provider consent. - The callback correction affects HTTP loopback OAuth flows. Public HTTPS callbacks retain their existing behavior. - Reviewed discovery URLs now override stale cached endpoints. Tests cover the Asana v1-to-v2 repair. - No schema migration. Connection removal retains the existing local-only revocation behavior. ## Model Used OpenAI GPT-6 through Codex, with code execution, browser testing, and GitHub tooling. The exact model variant and context window are not exposed in this session. ## Checklist - [x] I have included a thinking path that traces from project context to this change - [x] I have specified the model used (with version and capability details) - [x] I have checked ROADMAP.md and confirmed this PR does not duplicate planned core work - [x] I have searched GitHub for duplicate or related PRs and linked them above - [x] I have either (a) linked existing issues with `Fixes: #` / `Closes #` / `Refs #` OR (b) described the issue in-PR following the relevant issue template - [x] I have not referenced internal/instance-local Paperclip issues or links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip` URLs) - [x] My branch name describes the change (e.g. `docs/...`, `fix/...`) and contains no internal Paperclip ticket id or instance-derived details - [x] I have run tests locally and they pass - [x] I have added or updated tests where applicable - [x] I have updated relevant documentation to reflect my changes - [x] I have considered and documented any risks above - [x] All Paperclip CI gates are green - [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups - [x] I will address all Greptile and reviewer comments before requesting merge --------- Co-authored-by: Paperclip <noreply@paperclip.ing>	2026-10-01 10:24:44 -05:00
scotttong scotttong Claude Opus 5.5	467125fafb	feat(connections): one-screen connector setup with stated defaults (#14811 ) ## Thinking Path > - Paperclip is the open source app people use to manage AI agents for work > - Agents use Connections (the Apps catalog) to act in services like Notion, GitHub, Google Workspace and Railway > - Each connector asked the user to answer setup questions before it went to the provider. Most of the questions already had the correct answer selected > - ROADMAP.md lists "simpler setup" for Apps and Connections as ongoing work. This change continues that work > - This pull request removes the questions that Paperclip can answer itself. It states the defaults in one line and moves the choices behind "Change" and onto the Permissions tab > - The benefit is that most connectors take one click in Paperclip and then the provider's own consent screen ## Linked Issues or Issue Description No public issue exists. This is the description, from the enhancement template. What existing behavior does this improve? The setup flow for tool connectors in the Apps catalog. Subsystem affected Apps and Connections: `ui/src/features/connections`, `ui/src/pages/apps`, the `packages/shared` app definitions, and the OAuth routes in `server/src/routes/tool-access.ts`. Current behavior Every connector opened with an Access step. The step asked who can use the connection and which agents get it, and both answers were already selected. 18 connectors also asked "How do you want to connect?" when Paperclip could rank the methods. The Google apps and Postman also asked "What should Paperclip be able to do?" before sign-in. The four gateway connectors (Zapier, Arcade, Composio, Executor) used a separate two-step wizard. Asana was pinned to a customer-owned OAuth app, so the user had to register an app in Asana's developer console. The "Set all" control on the Permissions tab changed only one action. After the user approved access, Railway's consent page showed "you can close this window" and did not return to Paperclip. Proposed behavior One screen per connector, with one primary button. The screen states the defaults in one sentence, for example "Connects for everyone in your organization, available to all agents". A "Change" link opens one Advanced panel. When the provider's metadata allows dynamic client registration, Paperclip registers a client itself. Connecting lands on the Permissions tab. On that tab, "Set all" changes every action in the group. Reason and benefit The user makes fewer decisions before the connection exists. Most choices are easier to make after the connection, on the Permissions tab, where a change has an immediate effect. Breaking changes None. No schema or API change. Existing connections keep their settings. ## What Changed - No Access step. `ConnectionSetupFlow` no longer has the Access step. The flow shows the resolved default above the primary button and on the completion screen. The access controls moved into one Advanced panel. The panel opens automatically only when a setting in it is required. - A default method for every app. The flow always picks the ranked default method. Alternate methods are in the Advanced panel. The Google and Postman capability choice is not asked before sign-in. The write-capable method is the default. - Gateway connectors. `RemoteMcpProductionSetup` (Zapier, Arcade, Composio, Executor) no longer has its own Access step. Its commit path and the main commit path use one helper, `askFirstCatalogEntryIdsFor`, for server-suggested defaults. - Dynamic registration from live metadata. `canRegisterOAuthClientDynamically` now allows registration when the provider advertises a registration endpoint, even if the catalog entry lists only customer-owned clients. The Asana and Linear definitions and catalog text match live probes. Asana issues clients for loopback callbacks only, so a hosted deployment still needs an Asana app. - Connection setup states. New `packages/shared/src/connection-setup-state.ts` sorts each method into `instant`, `authorize`, `paste` or `register`. The gallery card verb ("Connect" or "Add key") comes from this resolver and the instance's ownership availability. - Generic MCP. The generic path no longer asks "Does it need a key?" first. A credential challenge from the server shows the key field. - Permissions tab. Each action row shows its risk level. Each group has a "Set all" control. The control sends one change for the whole group. Before, each row's save started from the same render, so the saves overwrote each other. The Zapier/Arcade/Composio/Executor setup screen had the same defect. - OAuth callback interstitial. A cross-site browser navigation to `/api/tools/oauth/callback` gets a small same-origin "Finishing your connection…" page. That page repeats the request, and the repeat does the code exchange. Railway's consent page replaces itself after about two seconds, and the code exchange plus tool discovery takes longer than that. The interstitial uses only a meta refresh, because the OAuth code is single-use. Requests without `Sec-Fetch-Site: cross-site` take the old path. - Linear registers through its MCP server. Linear pins the console endpoints at `linear.app`. Pinned endpoints now replace discovery only when the method cannot register, or when the connection has an operator-entered client. So a Linear connection now finds the registration endpoint at `mcp.linear.app`. - Own-OAuth-app recovery stays on the one-click screen. When the method also accepts a customer-owned client, the client fields are in the Advanced panel. The panel opens after a failed sign-in. "Try again" resumes the draft with the operator's client. - E2E specs follow the one-screen flow. The Access-step clicks are removed, the specs open Change before they pick agents, and they expect GitHub's Add key verb. - Default permissions do not change. New connections still allow every action. The user can set actions to Ask first or Off on the Permissions tab. ## Verification - `cd ui && npx vitest run src/pages/apps src/features/connections --no-file-parallelism` - `cd packages/shared && npx vitest run src/app-definitions.test.ts src/connection-setup-state.test.ts` - `cd server && npx vitest run src/__tests__/tool-access-service.test.ts src/__tests__/remote-mcp-connectors.test.ts` - `pnpm check:token-gates` - New tests: - `PermissionsPanel.group.test.tsx` checks that "Set all" sends one change for the whole group. It fails on the old code. - `action-permissions.test.ts` checks the group update. - `connection-setup-state.test.ts` checks the four setup states. - A server test checks that a cross-site callback gets the interstitial and does not use the OAuth state, and that the same-origin repeat completes the connection. - Manual check on a hosted staging deployment. GitHub, Google Drive, Composio, Notion, PostHog and Railway each connected from one screen and returned to the Permissions tab. On Railway, "Set all" changed all 65 write actions, and the change remained after a reload. - Visual changes: snapshot baselines are intentionally not updated. See the `doc/design/DECISION-SHEET.md` entry "Per-change snapshot verification demoted to dormant (Jul 13 2026)". ## Risks - Fewer confirmation clicks. Organization-wide access is the default, and the user does not confirm it on a separate step. This was already the preselected answer. The flow shows the default before the user clicks and again after the connection. - Google write scope. Google apps now request the write-capable scope by default. A narrower scope needs a new sign-in. - Dynamic registration from live metadata. A provider can advertise registration and then reject a redirect URI. Asana rejects hosted callbacks, for example. In that case registration fails, and the customer-owned client path remains available for recovery. - Callback interstitial. The OAuth callback adds one same-origin step for cross-site browser navigations. Browsers without `Sec-Fetch-*` headers use the old direct path. - Chat and bot connectors (Discord, Telegram, Microsoft Teams, iMessage) do not change. > For core feature work, check [`ROADMAP.md`](ROADMAP.md) first and discuss it in `#dev` before opening the PR. Feature PRs that overlap with planned core work may need to be redirected — check the roadmap first. See `CONTRIBUTING.md`. ## Model Used - Claude Opus 5.5 (Anthropic), model ID `claude-opus-5-5`, used through Claude Code with tool use (shell, file editing, browser automation) and extended thinking. It wrote the code, the tests and this description. A human product owner directed the work and tested it by hand. ## Checklist - [x] I have included a thinking path that traces from project context to this change - [x] I have specified the model used (with version and capability details) - [x] I have checked ROADMAP.md and confirmed this PR does not duplicate planned core work - [x] I have searched GitHub for duplicate or related PRs and linked them above - [x] I have either (a) linked existing issues with `Fixes: #` / `Closes #` / `Refs #` OR (b) described the issue in-PR following the relevant issue template - [x] I have not referenced internal/instance-local Paperclip issues or links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip` URLs) - [x] My branch name describes the change (e.g. `docs/...`, `fix/...`) and contains no internal Paperclip ticket id or instance-derived details - [x] I have run tests locally and they pass - [x] I have added or updated tests where applicable - [x] I have updated relevant documentation to reflect my changes - [x] I have considered and documented any risks above - [x] All Paperclip CI gates are green - [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups - [x] I will address all Greptile and reviewer comments before requesting merge 🤖 Generated with [Claude Code](https://claude.com/claude-code) --------- Co-authored-by: scotttong <squadbot000@gmail.com> Co-authored-by: Claude Opus 5.5 <noreply@anthropic.com>	2026-09-30 23:13:47 -07:00
Devin FoleyandPaperclip	0d3e7bf6ac	fix(daytona): keep commands alive after log stream closure (#14799 ) ## Thinking Path > - Paperclip is the open source app people use to manage AI agents for work. > - Sandbox providers run agent processes and send their output to the host. > - The Daytona SDK can close a log socket while the remote command still runs. > - The driver treated a clean socket close as completion before it had a command exit code. > - This pull request recovers log observation for the same command and waits for a recorded exit. > - The host keeps receiving new output without a second command dispatch. ## Linked Issues or Issue Description What happened? A clean close of the Daytona session log WebSocket resolves the SDK callback promise. If the command still runs, the driver returned `exitCode: null` with `timedOut: false` after a short status check. A streamed ACP bridge can then report a process disconnect. Expected behavior A log socket close must not complete a running command. Recovery must preserve new output, the caller's lifetime controls, and one command dispatch. Steps to reproduce Use the callback form of `getSessionCommandLogs`. Let that promise resolve while `getSessionCommand` still has no exit code. Keep the command running, then expose its final logs and exit code. The new regressions exercise this sequence, including streams that run longer than the provider operation timeout. Related: #11021, #11049. #14485 covers input delivery retries, which are a separate transport path. ## What Changed - Require a recorded command exit after a clean log-stream close. Reconnect once, then read status and full log snapshots at most once per second. - Forward new output during recovery. Remove replayed prefixes and reconcile a final snapshot so bytes written after socket close are retained. - Hold a trailing UTF-8 replacement suffix until replay or completion resolves it. This handles the SDK decoder flush when a socket closes in the middle of a character. - Preserve healthy initial and reconnected stream lifetimes. Bound each recovery read. Preserve the existing fallback timeout budget after rejected stream attempts. - Retain partial output on timeout. A log-observation timeout reports an unconfirmed result and preserves any observed exit code in metadata; it does not synthesize successful completion. ## Verification - `pnpm exec vitest run --config packages/plugins/sandbox-providers/daytona/vitest.config.ts`: 335 passed, 14 gated tests skipped. - `pnpm exec vitest run --project @paperclipai/plugin-daytona`: 335 passed, 14 gated tests skipped. - `pnpm exec tsc --noEmit -p packages/plugins/sandbox-providers/daytona/tsconfig.json`: passed. - `pnpm exec tsc -p packages/plugins/sandbox-providers/daytona/tsconfig.json`: passed. - `pnpm --workspace-concurrency=1 -r typecheck`: passed. - `CARGO_BUILD_JOBS=2 pnpm --workspace-concurrency=1 -r build`: passed. - `pnpm test:run`: exited with failure after 845.77 seconds. The server phase reported 43 failed files, 529 passed, and 163 skipped; 14 failed tests, 9,122 passed, and 5,599 skipped. All failure entries were traced to local PostgreSQL startup/cleanup errors or ten macOS skill-cache rename errors. The package helper restored 17 missing PostgreSQL library links; the four sequencing/migration tests and fourteen native-workspace-finalizer tests then passed. The ten cache failures match clean-base evidence with identical source/test blobs. This is not a full-suite pass; later local test groups did not run. PR CI supplies the complete check result. - Regressions cover clean and rejected stream recovery, two hour-long streams with a five-minute operation budget, live fallback output, one dispatch, delayed final output, stale snapshots, SDK UTF-8 decoding, bounded observation, and timer cleanup. - `git diff --check` and a local diff scan for secrets and private identifiers passed. - Greptile reviewed head `293c4dbe67` at 5/5. Both prior findings are fixed, both threads are resolved, and no new actionable findings remain. ## Risks - The SDK returns full snapshots with no offset API. After both stream attempts end, polling bandwidth grows with retained output. The one-second cadence limits request frequency. - The SDK callback stream has no cancellation handle. Existing caller stop logic and provider/session teardown still own its lifetime. Late callbacks from a settled stream are ignored. - A successful status read with no exit code keeps recovery active under the existing caller guard. A failed read stops recovery; it is not retried indefinitely. - No command replay, provider API change, schema migration, or runtime timeout policy change is included. ## Model Used OpenAI GPT-6 through Codex, with tool use and independent code review. The exact serving model identifier is not exposed in this session. ## Checklist - [x] I have included a thinking path that traces from project context to this change - [x] I have specified the model used (with version and capability details) - [x] I have checked ROADMAP.md and confirmed this PR does not duplicate planned core work - [x] I have searched GitHub for duplicate or related PRs and linked them above - [x] I have either (a) linked existing issues with `Fixes: #` / `Closes #` / `Refs #` OR (b) described the issue in-PR following the relevant issue template - [x] I have not referenced internal/instance-local Paperclip issues or links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip` URLs) - [x] My branch name describes the change (e.g. `docs/...`, `fix/...`) and contains no internal Paperclip ticket id or instance-derived details - [ ] I have run tests locally and they pass - [x] I have added or updated tests where applicable - [x] I have updated relevant documentation to reflect my changes - [x] I have considered and documented any risks above - [ ] All Paperclip CI gates are green - [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups - [x] I will address all Greptile and reviewer comments before requesting merge --------- Co-authored-by: Paperclip <noreply@paperclip.ing>	2026-09-30 18:37:54 -07:00
Devin FoleyandPaperclip	4b9a6000f7	Add bounded evidence for directory lock timeouts (#14787 ) ## Thinking Path > - Paperclip is the open source app people use to manage AI agents for work. > - Agent files use directory locks during collection and cleanup. > - A lock timeout can fail finalization after the model turn completes. > - The timeout currently identifies no owner state or waiting operation. > - This pull request adds bounded evidence to the existing run failure report. > - Operators can distinguish a known local holder from a possible old lock without changing lock safety. ## Linked Issues or Issue Description What happened? A directory lock timeout does not distinguish active local work from an owner record left by an earlier process. The stored execution stage can also precede the cleanup operation that failed. Expected behavior The failure report should identify the waiting operation and expose bounded ownership clues. It must preserve the timeout and keep unknown ownership protected. Steps to reproduce Hold a directory merge lock while a second caller reaches its acquisition deadline. The regression tests exercise a live holder and an older owner record with a live PID. Related: #9667 proposes stale-lock recovery under a single-server assumption. This change only adds evidence and does not adopt that assumption. #14575 and #14665 add other run failure diagnostics. ## What Changed - Record lock owner state, capped age and wait duration, same-process and process-age comparisons, and whether this module holds the lock. - Label agent-directory release, collection, checkpoint, and warm handoff timeouts with a fixed operation code. - Validate each field before the existing event-local Sentry report accepts it. Exclude owner records, PIDs, paths, and absolute timestamps. - Limit the extra diagnostic owner read to 100 ms with best-effort abort; malformed JSON is `invalid` and unreadable owner records remain `unknown`. - Document the diagnostic limits and verify that contenders never reclaim protected locks. ## Verification - Focused lock, diagnostic, real Sentry SDK, and database-backed agent-directory tests: 126 passed, including stalled-read and malformed/missing/unreadable-owner regression coverage. - Final revision `0691613dcc`: all 54 reported checks successful, with two intentionally skipped Storybook checks. Greptile: 5/5, zero unresolved review threads; no merge conflicts. - `pnpm -r typecheck`: passed. - `pnpm build`: passed. - `pnpm test:run`: complete suite coverage ran with the existing repository shard flags: four general-server shards, four serialized shards, two general-workspaces-a shards, and general-workspaces-b. The full run is not green because of the base failures below. - The broad run found 13 failures in the unchanged macOS skill-cache tests. All 13 reproduce on the clean base revision. Open PR #14290 covers that existing failure. - Two unchanged CLI archive tests hit their five-second limits during the broad run; all 17 tests in that file pass on recheck. A CLI auth socket error also cleared on recheck (19 tests), and its full serialized shard passed on rerun. ## Risks This is a diagnostic change, not a stale-lock fix. Owner observations can race with release. Wall-clock shifts can affect the age comparison. A local-holder flag covers only this module instance. None of these fields authorizes reclamation or proves a file save. Lock acquisition, release, retries, task status, and recovery guards retain their current behavior. No schema change or deployment action is required. ## Model Used OpenAI Codex, based on GPT-6, with code execution and repository tools. The exact model build and context window were not exposed to this agent. ## Checklist - [x] I have included a thinking path that traces from project context to this change - [x] I have specified the model used (with version and capability details) - [x] I have checked ROADMAP.md and confirmed this PR does not duplicate planned core work - [x] I have searched GitHub for duplicate or related PRs and linked them above - [x] I have either (a) linked existing issues with `Fixes: #` / `Closes #` / `Refs #` OR (b) described the issue in-PR following the relevant issue template - [x] I have not referenced internal/instance-local Paperclip issues or links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip` URLs) - [x] My branch name describes the change (e.g. `docs/...`, `fix/...`) and contains no internal Paperclip ticket id or instance-derived details - [ ] I have run tests locally and they pass (focused checks pass; existing base failures are documented above) - [x] I have added or updated tests where applicable - [x] I have updated relevant documentation to reflect my changes - [x] I have considered and documented any risks above - [x] All Paperclip CI gates are green - [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups - [x] I will address all Greptile and reviewer comments before requesting merge --------- Co-authored-by: Paperclip <noreply@paperclip.ing>	2026-09-30 18:35:12 -07:00
Devin FoleyandPaperclip	98d8a6ccac	Stop replaying ambiguous database disconnects (#14773 ) ## Thinking Path > - Paperclip stores agent work and control state in PostgreSQL. > - Its database client must not repeat a mutation after an uncertain result. > - The global retry wrapper treated `write CONNECTION_CLOSED` as proof that PostgreSQL never received a statement. > - postgres.js also uses that message when the connection closes after statement delivery. > - This pull request removes that global replay and tests the actual driver over a local wire connection. > - Callers retain control of retries when they can prove the complete operation is idempotent. ## Linked Issues or Issue Description Follow-up to #13417. Preserve the transaction disconnect handling from #13643 and the explicit actor synchronization retries introduced in #12773. Searched open and closed issues and PRs for database retries, disconnects, and `CONNECTION_CLOSED`. The open circuit-breaker proposal #11142 addresses outage queue growth; it does not establish whether an already-sent statement can be replayed. What happened? The database wrapper replayed an arbitrary statement up to three times after `write CONNECTION_CLOSED`. The driver adds `write ` to connection-close errors even after the peer receives the statement. A local protocol peer receives the same submitted INSERT three times when it drops each response. A committed write could therefore execute more than once. Expected behavior An ambiguous statement result must fail without automatic replay. A subsequent operation must be able to reconnect. Steps to reproduce Run the new wire regression against the parent commit. The six Simple Query cases and the parameterized Drizzle case receive three executions instead of one. The named prepared-client case was already safe and stays covered. The peer reads the entire statement and then closes the connection. This demonstrates repeated delivery with the real driver; it does not claim that a historical incident duplicated a committed write. Paperclip version or commit Reproduced on source commit `018993140f` with the patched postgres.js 3.4.9 dependency. Deployment mode Built from source with a local PostgreSQL protocol peer. No live provider or customer database is used. ## What Changed - Pass the original postgres.js client to Drizzle and remove the global statement replay wrapper. - Add eight wire regressions: six Simple Query cases for INSERT, side-effect-capable SELECT, and a data-changing CTE, plus parameterized Drizzle and named prepared-client cases. The extended peer processes Parse, Describe, Bind, and Execute, verifies bound parameters, and drops the response only after Execute. Each case checks one delivery and recovery on a fresh query. - Document ambiguous outcomes and the retry compatibility tradeoff. Keep explicit idempotent actor-sync retries and disconnected-transaction handling unchanged. ## Verification - Before the fix: the six Simple Query cases and the parameterized Drizzle case failed with three executions instead of one. The named prepared-client case was already safe. All eight wire cases pass on this branch. - Final focused client, pool teardown, configuration, and actor-sync retry checks: 28 tests passed. `pnpm --filter @paperclipai/db typecheck` also passed after the test-only follow-up. - First implementation head, `pnpm exec vitest run --project @paperclipai/db`: all 158 tests passed across 45 files, including real PostgreSQL transaction/reserved-connection recovery. The local embedded dependency's symlinks were hydrated before this run. - `pnpm -r typecheck`: passed. - `pnpm build`: passed. - The complete local `pnpm test:run` did not finish; no complete local suite pass is claimed. All CI test, typecheck, and build gates passed on the first implementation head `11f8b22d90`. Final-head CI is pending after the test-only follow-up. - `git diff --check`: passed. Reviewed the diff for secrets, personal data, generated output, and run artifacts. ## Risks Some transient statement failures that the global wrapper previously replayed now reach the caller. Operation owners must retry only when they have an idempotency guarantee or a durable receipt that prevents duplicate effects. A connection error is not proof that a write failed to commit. There is no SQL-text retry heuristic, new suppression, schema change, or migration. This change prevents unsafe replay; it does not prevent network disconnects. ## Model Used OpenAI Codex / GPT-6, with reasoning, repository inspection, code execution, and local protocol tests. The exact backend model ID and context-window size are not exposed in this session. ## Checklist - [x] I have included a thinking path that traces from project context to this change - [x] I have specified the model used (with version and capability details) - [x] I have checked ROADMAP.md and confirmed this PR does not duplicate planned core work - [x] I have searched GitHub for duplicate or related PRs and linked them above - [x] I have either (a) linked existing issues with `Fixes: #` / `Closes #` / `Refs #` OR (b) described the issue in-PR following the relevant issue template - [x] I have not referenced internal/instance-local Paperclip issues or links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip` URLs) - [x] My branch name describes the change (e.g. `docs/...`, `fix/...`) and contains no internal Paperclip ticket id or instance-derived details - [x] I have run tests locally and they pass - [x] I have added or updated tests where applicable - [x] I have updated relevant documentation to reflect my changes - [x] I have considered and documented any risks above - [ ] All Paperclip CI gates are green - [ ] Greptile is 5/5 with no open P2s, recommendations, or follow-ups - [x] I will address all Greptile and reviewer comments before requesting merge Final verification (September30): every final-head CI check passed at `3004c5bda39c985c3557547ec45e33870ce5d010`. Greptile scored5/5 on this head, all review threads are resolved, and the branch is mergeable. Eight real-wire regressions cover simple, parameterized Drizzle, and named prepared queries. Full local suite did not produce a completed result; the complete CI matrix passed. This public PR remains open for maintainer merge. --------- Co-authored-by: Paperclip <noreply@paperclip.ing>	2026-09-30 18:34:00 -07:00
DottaandPaperclip	33f2b3a159	fix: separate GitHub tools and code review bot connections (#14750 ) ## Thinking Path > - Paperclip is the open source app people use to manage AI agents for work. > - The Connectors catalog lets people give agents tools or connect agents to conversations. > - GitHub put these two uses behind one card and an extra choice. > - People should choose the connection they need from the catalog. > - This pull request keeps GitHub for tools and adds GitHub Code Review Bot as a separate card. > - Each card opens its setup directly. Both use the existing connection code. ## Linked Issues or Issue Description What existing behavior does this improve? GitHub connector discovery and setup. Current behavior With chat connectors enabled, GitHub opens a menu that asks whether to use tools or create a bot. Saved tools and bots share the same catalog entry. Proposed behavior GitHub opens tool account access. GitHub Code Review Bot opens agent selection. Saved bots and drafts appear under the bot card. Chat-disabled instances show only GitHub tools. Reason and benefit The catalog names the two uses and removes an extra setup choice. The bot keeps the existing GitHub provider, credentials, endpoint IDs, setup steps, and runtime. Additional context Related work: https://github.com/paperclipai/paperclip/pull/12843 and https://github.com/paperclipai/paperclip/pull/14594 established GitHub account identity. This change preserves that tool flow. No duplicate catalog split was found. ## What Changed - Split the generated app definitions into GitHub tools and GitHub Code Review Bot. Reuse the existing GitHub logo and channel method. - Open bot setup directly, including old resume and reconnect links. - Put existing bot endpoints and drafts under the bot card. Hide duplicate internal chat applications. - Keep pasted GitHub URLs mapped to the tool connection. - Add seven Storybook states for the catalog, saved connections, disabled chat, both setup paths, mobile, and light mode. - Fix narrow-screen bot rows so the label cannot overlap status and setup actions. - Update catalog, route, browser, and API tests, plus the GitHub connector guide. ## Verification - [Hosted Storybook](https://d1p6rlowie26tp.cloudfront.net/storybook/branches/codex~2Fgithub-review-connection/?path=/story/connections-github-and-code-review-bot--catalog): seven states built from this branch. The deployment passed its public-file verification. - All GitHub checks pass on `d13a2cd53561645bb2a15c6f8e75a61a936d6459`. Two optional Storybook jobs skip under their normal trigger rules; the manual Storybook deployment passes. The branch has no merge conflicts. - Greptile: 5/5 on the current head, with no review comments or unresolved threads. - `pnpm -r typecheck`, `pnpm build`, `pnpm check:token-gates`, and `pnpm build-storybook` passed. The final Storybook fixture also passed UI typecheck and the hosted build. - Targeted catalog, URL matching, routing, grouping, brand, and chat UI contract tests passed. - GitHub provider browser tests: 2 passed. These cover direct tool setup and the bot setup and management lifecycle with provider responses mocked. - Embedded-browser test on an isolated local instance: opened both cards, selected an agent, saved a bot draft, and resumed the same endpoint under the bot card after a reload. - Storybook Tool Setup and Bot Setup assertions pass in the published preview. Chat Disabled assertions pass locally. Inspected mobile and light mode, including the draft-row layout and official GitHub marks. - Local full-suite limitation: `pnpm test:run` was not clean. A cross-company route assertion failed in the aggregate run and passed in isolation; a workspace-runtime test reached its 30-second hook timeout. Some isolated database reruns skipped when the embedded-PostgreSQL availability probe failed. The local aggregate was stopped after CI completed. The corresponding full CI suites pass all 360 tool-access tests and all 162 workspace-runtime tests. - No live GitHub authorization or installation was performed. The isolated instance correctly stopped at the cloud enrollment or public HTTPS prerequisites. ## Risks - Low scope: catalog presentation and routing change. There is no database migration or provider credential change. - Existing GitHub bot URLs now open bot setup directly. The tool route remains `/apps/connect?source=github`. - The bot remains behind the existing chat-connectors feature flag. Existing endpoints retain `provider: github`. - Channel applications are represented by endpoint rows. Regression tests cover legacy bot applications, tools, active bots, and drafts together. ## Model Used OpenAI GPT-6 through Codex, with reasoning, code execution, and embedded-browser tools. The exact deployed model ID, context window size, and reasoning setting are not exposed to this session. ## Checklist - [x] I have included a thinking path that traces from project context to this change - [x] I have specified the model used (with version and capability details) - [x] I have checked ROADMAP.md and confirmed this PR does not duplicate planned core work - [x] I have searched GitHub for duplicate or related PRs and linked them above - [x] I have either (a) linked existing issues with `Fixes: #` / `Closes #` / `Refs #` OR (b) described the issue in-PR following the relevant issue template - [x] I have not referenced internal/instance-local Paperclip issues or links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip` URLs) - [x] My branch name describes the change (e.g. `docs/...`, `fix/...`) and contains no internal Paperclip ticket id or instance-derived details - [x] I have run tests locally and they pass - [x] I have added or updated tests where applicable - [x] I have updated relevant documentation to reflect my changes - [x] I have considered and documented any risks above - [x] All Paperclip CI gates are green - [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups - [x] I will address all Greptile and reviewer comments before requesting merge --------- Co-authored-by: Paperclip <noreply@paperclip.ing>	2026-09-30 17:15:02 -05:00
DottaandPaperclip	018993140f	feat: let agents name prompt-only tasks (#14761 ) ## Thinking Path > - Paperclip is the open source app people use to manage AI agents for work. > - Users create tasks with a title and a description. > - A required title adds work when the prompt already explains the request. > - An agent can name the task once it reads that request. > - This pull request accepts prompt-only tasks and starts them with a short prompt slice. > - A scoped title tool lets the assigned agent replace that slice early without changing execution state. > - A live browser eval checks the real agent call, saved title, audit entry, and preservation of user titles. ## Linked Issues or Issue Description Subsystem affected Cross-cutting: task creation, shared contracts, database, server, runner tools, and board UI. Problem or motivation Users must currently write a title before they can submit a detailed task prompt. The agent has enough context to write a useful title itself. Proposed solution Make the title optional when a description is present. Save the first 120 characters of the normalized prompt as a provisional title. Ask the assigned agent to call `set_task_title` early. Use an atomic provisional-title guard to preserve titles supplied or edited by users. Keep explicit titles supported. Related: #14543 and #14556 concern empty-title submission. This change intentionally enables that submission when a prompt is present, instead of requiring a title. ## What Changed - Add the `titleNeedsGeneration` field with an idempotent migration. Keep existing titles unchanged. - Add `PUT /api/issues/:id/title` and the native and legacy `set_task_title` tool. Enforce company access, active-run ownership, shared, bounded retry receipts across native/HTTP calls, and transactional audit logging. Refresh external-object links after commit, with the same feature gate and plugin detectors as ordinary title edits. - Add early naming guidance in Standard, Ask, and Plan task context. Preserve the description, status, and assignment. - Allow prompt-only root and child task creation, plus draft restoration in the New Task dialog. Keep user titles supported. - Add an opt-in Product E2E suite for prompt-only Standard and Ask tasks, plus an explicit-title control. It checks actual provider calls within the first five tools, persisted state, audit attribution, and the reloaded UI. - Preserve a closed vocabulary of API key maintenance phrases in declared prose while rejecting opaque credential suffixes. Add one bounded naming retry after wording is rejected, without treating the rejected call as a saved title. - Repair the native cleanup receipt check exposed during full verification: accept matching input digests, retain legacy input checks, and reject conflicting receipts. ## Verification - Live Product E2E on `f43478473800e3a46b85c5ee79677efdb15108e7`: 3/3 passed with native Codex `gpt-5.4-mini`, first attempts only, automatic retries disabled. Standard and Ask each saved “Rotate expired API key” on their first tool call, with matching persisted state and a single same-run audit entry. The explicit-title control retained its user title with zero title writes. All three verified the reloaded browser UI. - Campaign: `local-2026-09-30T21-30-11-021Z`. Earlier failed campaigns are retained separately; they exposed credential-prose handling and prompted the naming recovery fix. No failed result was regraded or deleted. - Reproduce with `pnpm test:e2e:runner -- --id task-titles.runner-codex-mini.local.prompt-title-standard --id task-titles.runner-codex-mini.local.prompt-title-ask --id task-titles.runner-codex-mini.local.preserve-explicit-title --max-automatic-retries 0` and an authorized provider key. - Full `pnpm -r typecheck` and `pnpm build` passed on the latest commit. The runner build used the configured external eval source tree. - Product E2E unit suite: 61 files, 818 tests passed; E2E typecheck and UI token gates passed. - Title API/native regressions cover prompt-only and explicit child creation, user edits, ownership/company isolation, external reference refresh, cross-surface retry replay, and the 64-key limit without receipt eviction. All passed. Prompt-context coverage: 44 tests passed. - Rust credential regressions: 35 tests passed, including benign maintenance qualifiers and opaque credential rejection in every declared prose field. Catalog/report reconciliation: 28 tests passed. Native recovery: 560 tests passed. - Broad local `pnpm test:run`: 14,555 tests passed in the general server group; two suites failed to initialize embedded PostgreSQL and the existing 40,000-file Git streaming stress test exceeded its 300-second macOS timeout. All three suites then passed in isolation (5 tests passed) without code or timeout changes. The original full local command exited nonzero and is not being represented as a clean full run. - Latest-head GitHub checks are green: 53 passed, 4 skipped, zero failed or pending, including all test shards and the canary packaging dry run. Greptile reviewed the same commit at 5/5, with zero unresolved review threads. ## Risks - The additive database field must reach the server and UI together. The migration uses `IF NOT EXISTS` and defaults existing tasks to a final title. - Title generation depends on the assigned agent running. Tasks without a run keep their provisional title. - Live qualification covers the native Codex path in Standard and Ask modes. API/legacy and Plan behavior have deterministic coverage. - The credential-prose exception validates the entire suffix against a closed maintenance vocabulary. Unknown suffixes, assignments, quoted values, credential prefixes, and diagnostics retain strict checks. ## Model Used OpenAI Codex, based on GPT-6, with reasoning, tool use, and code execution. The exact deployment ID and context window are not exposed in this session. The live eval uses the native Codex `gpt-5.4-mini` profile. ## Checklist - [x] I have included a thinking path that traces from project context to this change - [x] I have specified the model used (with version and capability details) - [x] I have checked ROADMAP.md and confirmed this PR does not duplicate planned core work - [x] I have searched GitHub for duplicate or related PRs and linked them above - [x] I have either (a) linked existing issues with `Fixes: #` / `Closes #` / `Refs #` OR (b) described the issue in-PR following the relevant issue template - [x] I have not referenced internal/instance-local Paperclip issues or links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip` URLs) - [x] My branch name describes the change (e.g. `docs/...`, `fix/...`) and contains no internal Paperclip ticket id or instance-derived details - [x] I have run tests locally and they pass - [x] I have added or updated tests where applicable - [x] I have updated relevant documentation to reflect my changes - [x] I have considered and documented any risks above - [x] All Paperclip CI gates are green - [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups - [x] I will address all Greptile and reviewer comments before requesting merge --------- Co-authored-by: Paperclip <noreply@paperclip.ing>	2026-09-30 16:48:24 -05:00
Devin FoleyandPaperclip	d6d67b00d3	Prevent background workspace scans from refreshing the Git index (#14666 ) ## Thinking Path Paperclip runs background workspace scans alongside real Git writers. `git status` can refresh the index as an optional side effect, taking a lock that makes another operation fail. Disable optional locking in the shared scan subprocess so background observation does not compete with workspace updates. ## Linked Issues or Issue Description What existing behavior does this improve? Workspace Git scans used by changed-file browsing, cleanliness guards, and sandbox snapshots. Current behavior The scan process inherits Git's default optional-lock behavior. Even a clean `status` can rewrite stale stat-cache entries in the index and contend with a concurrent writer. Proposed behavior Always set `GIT_OPTIONAL_LOCKS=0` for the shared scan subprocess while preserving the selected environment and Git's required write locks. Reason and benefit Background reads stop creating avoidable index contention. Git documents this behavior and recommends disabling optional locks for background status: [background refresh](https://git-scm.com/docs/git-status#_background_refresh). Breaking changes None to scan results or required write locking. Later scans may repeat stat checks that would otherwise have been cached in the index. Related scan implementation: #11572, #14253. This avoids one known contention source; it does not identify every historical lock owner or repair abandoned locks. ## What Changed - Disable optional locking at the shared scan subprocess boundary, including explicit caller environments. - Test a clean status against a deliberately stale index and prove an ordinary status would rewrite it. - Test tracked/untracked results with an existing index lock, preservation of that lock and working files, and continued rejection of a mandatory-lock write. - Document the scan behavior and performance tradeoff. ## Verification - Focused stream, workspace-sync, and scheduler suites: 63 tests passed. - Full `pnpm -r typecheck` and `pnpm build` passed locally. Final head `effe6420c77bd18d36af6b093db3a564c04b8b38` passed all 53 CI checks, including complete test coverage, typecheck, build, and browser/runner gates; two unrelated checks intentionally skipped. - Full local test attempts initially had missing embedded-Postgres library symlinks; the dependency setup was repaired. Duplicate local full-suite runs were stopped after full CI completed. This PR does not claim a completed full local suite. - Review regression: real Git honors the supplied `GIT_CONFIG_*` setting and the input environment remains unchanged; all four direct subprocess cases passed. - Reviewed the diff for secrets, customer data, and internal references. ## Risks Low risk. Disabling optional index refresh can repeat filesystem stat work on later scans. Required locks remain enforced; no lock is removed, no failed reset is retried, and workspace mutation guards are unchanged. No schema changes. ## Model Used OpenAI GPT-6 via Codex, with repository inspection, code execution, and tests. Exact model build identifier is not exposed by this session. ## Checklist - [x] Thinking path and model are specified - [x] Checked ROADMAP.md; this is a maintenance correction, not planned feature work - [x] Searched for duplicate and related PRs - [x] Described the issue using the enhancement template - [x] No internal issue references, customer data, or private instance links - [x] Descriptive branch name - [x] Focused regression tests pass - [x] Added tests and updated documentation - [x] Risks documented - [x] Required validation and CI gates are green (full suite validated in CI; local scope documented above) - [x] Greptile is 5/5 with no unresolved findings - [x] I will address review comments before requesting merge --------- Co-authored-by: Paperclip <noreply@paperclip.ing>	2026-09-30 14:28:07 -07:00
Devin FoleyandPaperclip	0ea6b10967	Record ACP activity and workspace restore failure evidence (#14665 ) ## Thinking Path Paperclip records terminal run failures for operators. A timeout's own log and cleanup output update the run's last-output timestamp, so that timestamp can make a long-silent provider look active. Snapshot runtime activity before finalization and include the saved workspace restore classification to make the next failure actionable without copying tool payloads. ## Linked Issues or Issue Description What existing behavior does this improve? Terminal run diagnostics in the existing opt-in Sentry integration. Current behavior Reports cannot distinguish runtime events from finalization logging and omit the already-persisted workspace restore code. A later successful run also does not establish that earlier workspace files were restored. Proposed behavior Record runtime-event age/count and pending-tool inventory at finalization, before status reads and cleanup. Forward only finite counts, a completeness boolean, and known restore codes through the existing reporter. Reason and benefit Operators can distinguish a silent turn with unfinished tools from recent runtime activity and see restore failures without retrieving private run output. Neither signal certifies productive work or successful recovery. Breaking changes None. Error grouping, execution deadlines, cancellation, recovery policy, and the Sentry opt-in remain unchanged. Related diagnostic work: #14573, #14575, #14639. ## What Changed - Snapshot ACP activity before success/failure finalization, including thrown relay failures. - Forward bounded numeric/boolean evidence and shared workspace restore codes; exclude commands, tool IDs, paths, and arbitrary result data. - Document limitations and test silence, empty streams, timeout, cleanup delay, incomplete tool inventory, and privacy. ## Verification - `pnpm -r typecheck` passed after the final implementation. - Changed suites: 252 tests passed; all 29 database reporter tests subsequently passed after restoring the embedded-Postgres package library symlinks. The migration test also passed (30 database cases total). - `pnpm build` passed during implementation. Final head `fe78dba6f592b1abccac7cdbf341bd2e0b0d30cb` passed all 53 CI checks, including complete test coverage, typecheck, build, and browser/runner gates; two unrelated checks intentionally skipped. - Full local test attempts initially hit missing embedded-Postgres library symlinks; the dependency setup was repaired and database tests passed. Duplicate local full-suite runs were stopped after full CI completed. This PR does not claim a completed full local suite. - Review regression: completed, failed, and cancelled tools are excluded from the pending count; focused activity/timeout tests and adapter-utils typecheck passed. - Reviewed the diff for secrets, customer data, and internal references. ## Risks Low risk, diagnostic-only. The existing tool inventory is incomplete for some runtime events, so the report carries its completeness flag. Event age is measured at finalization and does not prove useful work or identify the underlying provider failure. No schema changes or new capture gate. ## Model Used OpenAI GPT-6 via Codex, with repository inspection, code execution, and tests. Exact model build identifier is not exposed by this session. ## Checklist - [x] Thinking path and model are specified - [x] Checked ROADMAP.md; this is a maintenance correction, not planned feature work - [x] Searched for duplicate and related PRs - [x] Described the issue using the enhancement template - [x] No internal issue references, customer data, or private instance links - [x] Descriptive branch name - [x] Focused regression tests pass - [x] Added tests and updated documentation - [x] Risks documented - [x] Required validation and CI gates are green (full suite validated in CI; local scope documented above) - [x] Greptile is 5/5 with no unresolved findings - [x] I will address review comments before requesting merge --------- Co-authored-by: Paperclip <noreply@paperclip.ing>	2026-09-30 14:27:53 -07:00
DottaandPaperclip	ad55d0a281	fix(connections): repair personal credentials and request write access (#14739 ) ## Thinking Path > - Paperclip is the open source app people use to manage AI agents for work. > - Agents use Apps through a gateway that checks identity, company access, and action policies. > - Personal pasted credentials can point to company secrets. Setup can show success while the gateway rejects every call. > - Several OAuth methods also omit the scopes needed for their supported write actions. > - This pull request gives setup, health checks, and invocation the same credential rules. Owners repair existing connections by reconnecting. > - New connections request reviewed permissions for their supported actions. Read-only choices remain available under Advanced. > - Agents can use the connections people give them, while existing consent, identity boundaries, and action restrictions remain enforced. ## Linked Issues or Issue Description Refs #14009 and #14008. This addresses the personal-credential defect. The separate GitHub organization-identity selection defect is outside this change. Related work: #13942 fixed part of new personal-key setup. #14200 independently fixes legacy personal reconnect and protects managed-agent profile credentials during removal. This PR covers that ownership invariant across key and secret-URL setup, reconnect, health, discovery, and invocation, and keeps owner reconnect as the repair path. #14059 tracks requested versus provider-asserted OAuth scopes; it remains separate work. I searched open PRs and issues for Zapier, Airtable scopes, connector writes, and personal credential failures. What happened? A Zapier secret URL saved through personal setup can become a company secret referenced by a user grant. Health checks bypass the gateway's ownership check, so the connection appears healthy but calls fail with `grant_credential_invalid`. Custom-header paths can also receive a duplicate `credentials.` prefix. Omitted OAuth scopes make write access depend on provider defaults. Expected behavior Personal invocation credentials belong to the selected user. Setup, health, and actual calls enforce the same rule. New connections request documented permissions for supported read and write actions. Existing tokens gain no permissions without provider consent. Steps to reproduce 1. Connect Zapier or a generic secret URL with the personal identity. 2. Allow an agent to use the connection and complete setup. 3. Invoke a tool through a run-scoped gateway. The legacy layout fails ownership validation despite successful setup. Paperclip version or commit The implementation started from `44736c9c7c67b7b646ead9d51721db10f5b83835` and was rebased onto master at `94e8dec56`. Deployment mode Built from source. Regression tests use isolated PostgreSQL fixtures and controlled MCP transports. ## What Changed - Share credential writing, ownership validation, and canonical paths across initial setup, resume, reconnect, rotation, health, discovery, and gateway calls. Keep OAuth client-registration secrets separate from invocation credentials. - Existing personal connections with company-scoped credentials require owner reconnect with a fresh key or secret URL. Reconnect creates a correctly owned value and updates the existing grant and declarations. There is no automatic ownership backfill or new startup hook. - Preserve PostgreSQL timestamp precision when reconnect checks whether a grant changed. Previously, converting the timestamp to a JavaScript Date could reject reconnect with a false concurrent-change error. - Protect credentials used by other grants, connections, bindings, managed-agent profiles, routine triggers, or secret proposals from connection removal. - Review all 117 tool methods, including 84 OAuth methods. Record explicit scopes or documented provider-default exceptions with official evidence. Add Airtable's seven scopes, Hugging Face repository/job scopes, and other documented MCP permissions. - Prefer available write-capable methods. Put explicit read-only choices under Advanced. Explain pasted-key permissions and offer reconnect for missing OAuth consent. Preserve existing grants, policies, Google availability gates, and curated scope allowlists. - Reconnect generic secret URLs and custom headers using their stored credential fields. Refresh the catalog after setup, correct reconnect feedback and error guidance, and let Cancel exit invalid setup while Save & exit retains draft-saving behavior. - Apply ownership checks to the new GitHub repository/skill connection picker. Align the permission audit with the Google scope reductions merged on master. - Add run-scoped gateway, ownership, owner-reconnect, OAuth URL, insufficient-scope, UI, and catalog-wide regression coverage. Update the connector playbook and permission audit. ## Verification Latest commit `97bc0b86e0eae0ec892e4ac44beff1a66164b20e` passes all CI/status gates (55 completed check runs, no failures or pending checks) and has a completed Greptile review at 5/5 with no outstanding findings. GitHub reports the PR as mergeable/CLEAN. - Embedded browser: used the actual server and built UI from this worktree, a fresh isolated database, and local HTTP MCP fixtures. Completed personal bearer-key, secret-URL, and custom-header setup; reproduced the legacy ownership failure; reconnected through the owner’s form; and completed writes afterward. Read-back was verified for bearer-key and secret-URL connections. Public organization-wide setup appeared immediately in Browse without reload. Zapier URL validation/Cancel and Google’s enrollment gate were also exercised. - Persistence and invocation: verified user ownership, canonical `credentials.authorization` / `remote.url` / `headers.X-Api-Key` declarations, and unchanged connection/grant identity. The old company secrets retain their ownership. Separate HTTP calls through an actual run-scoped gateway session completed a write and read-back. - Backend coverage: the final gateway suite passes all 82 cases, including catalog Zapier and generic inline reconnect. It checks company/user isolation, canonical declarations, same-endpoint URL validation, fresh credentials, retained restrictions, and real gateway read/write execution using fixture transport. A timestamp with PostgreSQL microseconds covers the former false reconnect conflict. - Local checks: 368 catalog, gateway, repository, and UI tests passed before the final extra Zapier case; 49 GitHub skill access tests also passed. All three Apps browser regressions pass, including reconnect through the actual form and catalog visibility without reload. Full `pnpm -r typecheck`, `pnpm build`, server typecheck after the final patch, and token gates passed. Full tool-access service runs hit varying 15-second Google fixture timeouts; both affected cases and the updated reconnect assertion pass in isolation (3 tests). The complete test matrix passes in CI on this head. - Verification limits: no live provider account was available for Zapier/Airtable/OAuth consent or account-bound write proof. Public metadata and local fixtures do not establish provider consent. The original development database clone failed on a pre-existing missing `tool_connections_transport_check` constraint; browser acceptance used a fresh isolated database created by the normal CLI onboarding flow. ## Risks - Existing broken personal connections stay unusable until their owner reconnects. Health, discovery, and invocation return an actionable ownership error; startup does not rewrite credential ownership. - Scope changes affect new authorization requests. Providers may still require resource selection, account roles, paid plans, or app verification. Existing consent and action restrictions remain unchanged. - Shared credentials are retained rather than reassigned or revoked. Provider-default exceptions and unavailable live checks are documented in `doc/connections/CONNECTOR-PERMISSION-AUDIT.md`. - No new endpoint, database table, lockfile change, or CI workflow change is included. ## Model Used OpenAI Codex, based on GPT-6, with reasoning, code editing, shell execution, web research, and browser tools. The exact deployment model ID and context window were not exposed in this session. ## Checklist - [x] I have included a thinking path that traces from project context to this change - [x] I have specified the model used (with version and capability details) - [x] I have checked ROADMAP.md and confirmed this PR does not duplicate planned core work - [x] I have searched GitHub for duplicate or related PRs and linked them above - [x] I have either (a) linked existing issues with `Fixes: #` / `Closes #` / `Refs #` OR (b) described the issue in-PR following the relevant issue template - [x] I have not referenced internal/instance-local Paperclip issues or links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip` URLs) - [x] My branch name describes the change (e.g. `docs/...`, `fix/...`) and contains no internal Paperclip ticket id or instance-derived details - [x] I have run tests locally and they pass - [x] I have added or updated tests where applicable - [x] I have updated relevant documentation to reflect my changes - [x] I have considered and documented any risks above - [x] All Paperclip CI gates are green - [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups - [x] I will address all Greptile and reviewer comments before requesting merge --------- Co-authored-by: Paperclip <noreply@paperclip.ing>	2026-09-30 14:32:34 -05:00
DottaandPaperclip	cbd278dc03	fix(interactions): derive chat recipients and validate explicit users (#14742 ) ## Thinking Path > - Paperclip helps people manage AI agents and their work. > - Agents use saved questions to get human input and continue the same task. > - The standard question example recently told models to copy a user ID. > - A model can omit an identity prefix and create a question its intended recipient cannot answer. > - Agent Chat already knows the conversation owner, so the server can supply that identity. > - This pull request removes the blanket instruction and validates explicit recipients before saving. > - Ordinary questions stay simple, and explicit addressing remains available for decisions that need a particular person. ## Linked Issues or Issue Description Refs #14707, #14188. Related: #14238 handles legacy email recipients; this change prevents invalid recipients in new cards and retains exact ID matching. What happened? A model copied a Cloud user ID without its prefix into `addresseeUserId`. Creation succeeded. The intended user's answer then failed the exact recipient check. Expected behavior Ordinary chat questions use the saved conversation owner. A task may optionally name a specific recipient. The API rejects an unknown or unauthorized recipient before it creates a card. Steps to reproduce Create a chat question for a user whose ID is `paperclip-id:example`. Supply `example` as the addressee. Before this change, creation accepts the invalid recipient and the owner cannot answer. With this change, creation returns 422. Omitting the field saves the full owner ID and allows that owner to answer. ## What Changed - Remove `addresseeUserId` from standard question examples and remove the blanket requester-ID instruction. - Derive the recipient of ordinary chat questions from the persisted conversation owner. Reject conflicting explicit user IDs. - Keep explicit task recipients optional. Validate supplied user IDs with the existing board mutation policy, including company, viewer, and Cloud restrictions. - Preserve explicit agent routing, connector intents, confirmations, exact recipient checks, idempotent retries, and no-login local-board authority in local-trusted mode. - Update the blocker grader to accept an omitted recipient and verify the actual requester answered. - Add database and HTTP tests for prefixed identities, denied recipients, concurrent retries, saved answers, and response delivery. ## Verification - Database interaction service suite: 90 tests passed, including implicit local-board creation/answering and authenticated/Cloud denial. - Interaction HTTP route suite: 84 tests passed. - Affected interaction/native/connector/documentation suites: 231 tests passed across six files after valid-user fixtures were updated. - Resolver and interaction unit suites: 29 tests passed. - Product E2E unit/calibration suite: 793 tests passed; Product E2E typecheck and blocker catalog discovery passed. - Generated API-reference and capability contract checks passed. - `pnpm -r typecheck` and `pnpm build` passed. - Full local `pnpm test:run` did not finish green: its initial general-server pass had 14,416 passing assertions, one unrelated native-resume assertion failure on macOS, and three teardowns from an intermediate fixture cleanup fixed above. Separate broad local groups also encountered timeout/live-port failures under host load. Local UI (7,026), CLI (502), shared (817), and skills-catalog (20) tests passed; the complete final-head CI matrix is the broad verification gate. - After two CI cold-start readiness timeouts, a separate test-only commit gives the first exposure lifecycle fixture the existing normal 30-second readiness budget. Its real HTTP, ordering, and cleanup assertions remain intact; the targeted case and final Linux CI shard passed. Production deadlines are unchanged. - A separate OpenCode fixture failed twice on GitHub-hosted Ubuntu because its cached Node executable was group-writable; the same case passed on AWS runners. The fixture now qualifies its own Linux copy with mode `0500` and the actual copy digest. Host files and production security checks are unchanged. The focused macOS case passed; the new Linux-copy branch also passed on the final AWS-hosted Linux runner (1,125 passing Runner tests, 3 skipped). The final run was not on a GitHub-hosted runner. - Final-head [CI run 36762078176](https://github.com/paperclipai/paperclip/actions/runs/36762078176) passed for `116b968b24fa0a8c5724a7bf96e73a8dda5f0425`: 54 successful checks and two conditional Storybook skips, with no pending or failed checks. The 27 general/serialized test jobs reported 28,635 passing tests. Typecheck, build, Runner, browser E2E, and Canary gates passed. Greptile reviewed that exact head at 5/5; both review threads are resolved, with no open follow-ups. - No live provider replay is claimed by this PR. ## Risks - New explicitly addressed cards reject users who cannot mutate the issue, including viewers, inactive members, and invalid IDs. Callers that supplied invalid recipients must correct their request. - Existing addressed cards are not rewritten. Existing authorization checks remain strict. - Chat inference applies only to questions without an agent addressee. Connector intents and governed confirmations retain their own recipient paths. - No schema change or migration is required. ## Model Used OpenAI Codex, GPT-6 (exact serving variant and context window are not exposed in this environment). Used reasoning, tool use, code editing, and test execution. ## Checklist - [x] I have included a thinking path that traces from project context to this change - [x] I have specified the model used (with version and capability details) - [x] I have checked ROADMAP.md and confirmed this PR does not duplicate planned core work - [x] I have searched GitHub for duplicate or related PRs and linked them above - [x] I have either (a) linked existing issues with `Fixes: #` / `Closes #` / `Refs #` OR (b) described the issue in-PR following the relevant issue template - [x] I have not referenced internal/instance-local Paperclip issues or links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip` URLs) - [x] My branch name describes the change (e.g. `docs/...`, `fix/...`) and contains no internal Paperclip ticket id or instance-derived details - [x] I have run tests locally and they pass - [x] I have added or updated tests where applicable - [x] I have updated relevant documentation to reflect my changes - [x] I have considered and documented any risks above - [x] All Paperclip CI gates are green - [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups - [x] I will address all Greptile and reviewer comments before requesting merge --------- Co-authored-by: Paperclip <noreply@paperclip.ing>	2026-09-30 14:16:15 -05:00
DottaandPaperclip	b54b2dc35c	fix: preserve warm Codex turns with incremental managed file checkpoints (#14735 ) ## Thinking Path > - Paperclip manages AI agents and keeps their instructions and files durable. > - Native Codex runners can keep a process alive between compatible turns. > - Managed file collection stopped that process after each turn, which defeated warm reuse. > - Agent folders can contain large images and other files, so full copies on every turn are expensive. > - This change keeps one managed directory for the live session and saves only file changes after each turn. > - Ownership, authorization, instruction changes, and process retirement still control when reuse is safe. ## Linked Issues or Issue Description Related: #13710 introduced native warm session reuse. This fixes managed file collection that still forced those sessions to stop. No duplicate open PR or issue was found. What happened? With managed instructions and warm native Codex enabled, consecutive turns reused a Daytona sandbox but started a new runner process each time. The managed directory collector required process termination before saving files. Expected behavior Compatible turns keep the same process and managed `AGENT_HOME`. Each completed turn saves added, changed, and deleted files before the next turn starts. Unchanged large files do not transfer again. Steps to reproduce 1. Use a native Codex agent with managed instructions and a reusable Daytona environment. 2. Enable warm session reuse and run three turns on the same task. 3. Write a large binary on the first turn, edit a small note on each turn, and delete a file on the second turn. 4. Compare process identity across turns and read the canonical files through the public agent-files API. Paperclip version or commit Reproduced on `d30b03bd8c17604cdab1533eeeeb087aba30e8b1`. Deployment mode Local server with remote Daytona execution; cloud native runner uses the same path. ## What Changed - Retain the managed directory only for the verified owner of a live native Codex session. - Checkpoint each completed turn before releasing the session for reuse. Retry unstable captures, then stop and collect when a warm checkpoint cannot be validated. - Compare metadata and cached hashes, stream only changed file payloads, record deletions, and validate path, content, quota, and authorization before saving. - Rotate sessions when canonical files, loaded instructions, credentials, or launch policy change. Fence stale collection and cleanup callbacks from later owners. - Keep cleanup and recovery aware of the current session owner. Recheck canonical files under the writer lock at handoff, attach the successor collector before fallible bookkeeping, and emit one final save receipt on checkpoint fallback. Preserve storage warnings across unchanged checkpoints. - Add regression coverage and a three-turn Daytona test with independent public API file checks, an unchanged 8 MiB binary, deletion checks, and strict process identity checks. - Document checkpoint consistency, lifecycle behavior, and local run-log counters. - Replace a timing assumption in the Daytona teardown test with explicit transfer-arrival gates after CI exposed an unset release callback. ## Verification - Full local `pnpm -r typecheck` and `pnpm build` passed. Server checks were repeated after the final storage-warning fix. - Runner E2E typecheck and 749 runner E2E unit tests passed. - Focused file checkpoint, directory ownership, instruction collection, native session, and merge tests passed. After review fixes, the managed-directory and native-session suites passed 550 tests, including intervening canonical edits, same-run fresh restore, failed handoff collection, and one-call fallback collection. Server typecheck passed again. The Daytona plugin suite passed 218 tests. The quota-warning regression failed before the fix and passed afterward. - Three real Daytona campaigns passed before the final handoff review fixes. The latest kept PID 547 across all three turns. The first checkpoint copied 8,388,635 bytes; the next two copied 36 and 54 bytes. Public API reads verified the binary, note contents, and deletion after every turn. Test cleanup deleted the sandbox. - The final head was also deployed to an isolated cloud staging instance and passed three UI-triggered native Codex turns with managed instructions. All three retained the same process ID/start time, native session, provider session, runner instance, and Daytona sandbox. Checkpoints copied 8,388,643 bytes on turn 1, then only 52 and 78 bytes on turns 2 and 3; those warm captures also hashed only 52 and 78 bytes. Independent canonical API reads verified every byte of the unchanged 8 MiB binary and the exact note contents after every turn; the deleted file returned 404 after turns 2 and 3. After restoring the original lifecycle and agent-auth configuration, removing the temporary secret, pausing the test agent, and deleting both test sandboxes, independent canonical API reads still verified the entire binary, the final 78-byte three-line note, and the deletion. The native runner flag remained enabled and the final serving revision remained the PR head. - Two earlier staging attempts are preserved as failures and are excluded from the acceptance result: a saved ChatGPT login failed with a provider routing 401, and its subsequent stopped-sandbox retry failed before provider startup with a closed-lease admission error. The successful campaign used a fresh sandbox and a temporary encrypted API-key binding. The stopped-lease retry remains unexplained; this campaign does not establish recovery of that failed sandbox. - All [Paperclip CI gates](https://github.com/paperclipai/paperclip/actions/runs/36750397355) pass on `26ef2ef56a389259246809805c0b34a4747eb86b`, including full test partitions, build, typecheck, runner verification, E2E shards, and the Canary clean public-npm install. Greptile reviewed that exact head at 5/5 with no unresolved review threads or outstanding findings. - Full local repository coverage used the existing CI partitions, but the 40,000-file Git streaming stress test timed out and its local retry was interrupted by macOS thermal emergency sleep; this is not a green full local suite claim. The exact stress test passed on the final head in [CI server shard 2/12](https://github.com/paperclipai/paperclip/actions/runs/36750397355/job/110008294290), in 111.9 seconds. - Repeat the live test with configured credentials and a Linux runner artifact: `pnpm test:e2e:runner -- --id daytona-warm-continuity.runner-codex.daytona.warm-three-turn`. ## Risks - This is a file-level checkpoint, not an atomic snapshot of the whole folder. Background writes after a capture are saved by the next checkpoint or final stopped collection. - Metadata scans still visit all paths. Modified files transfer in full; unchanged files do not rehash or transfer. - Incorrect ownership or reuse could collect the wrong directory. Run ownership fences, current authorization, stable capture validation, and stopped collection fallbacks are covered by tests. - Warm reuse remains opt-in. No database migration or fleet default changes. ## Model Used OpenAI GPT-6 through Codex, with reasoning, code editing, tool use, and test execution. The exact serving model ID and context-window size are not exposed by this session. ## Checklist - [x] I have included a thinking path that traces from project context to this change - [x] I have specified the model used (with version and capability details) - [x] I have checked ROADMAP.md and confirmed this PR does not duplicate planned core work - [x] I have searched GitHub for duplicate or related PRs and linked them above - [x] I have either (a) linked existing issues with `Fixes: #` / `Closes #` / `Refs #` OR (b) described the issue in-PR following the relevant issue template - [x] I have not referenced internal/instance-local Paperclip issues or links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip` URLs) - [x] My branch name describes the change (e.g. `docs/...`, `fix/...`) and contains no internal Paperclip ticket id or instance-derived details - [x] I have run tests locally and they pass - [x] I have added or updated tests where applicable - [x] I have updated relevant documentation to reflect my changes - [x] I have considered and documented any risks above - [x] All Paperclip CI gates are green - [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups - [x] I will address all Greptile and reviewer comments before requesting merge --------- Co-authored-by: Paperclip <noreply@paperclip.ing>	2026-09-30 13:33:37 -05:00
DottaandPaperclip	d432dc7fa3	Add GitHub-synced skill sources (#14713 ) ## Thinking Path > - Paperclip is the open source app people use to manage AI agents for work. > - Company skills supply instructions and files to those agents. > - GitHub imports already exist, but users cannot manage repositories as skill sources. > - Repository refresh also needs caller-authorized access and complete local packages. > - This pull request adds Sources inside Skills and reuses GitHub connections from Apps. > - Installed snapshots let agents use skills without fetching GitHub during a run. > - Manual refresh preserves skill identity and leaves failed imports on their last good version. ## Linked Issues or Issue Description Subsystem affected Cross-cutting: skills UI, server, database, shared contracts, and runtime materialization. Problem or motivation Users keep skills in GitHub repositories. They need a clear way to select, import, and refresh those skills. Existing imports do not expose repository management or consistently preserve supporting files. Proposed solution Add company-scoped skill sources. Browse repositories from all accessible GitHub connections, or paste a public repository or branch URL. Select whole skill packages, inspect included files and reference warnings, and install complete, immutable snapshots. Refresh each source manually. Alternatives considered Project repository settings hide the workflow from Skills. A second GitHub connector would duplicate credentials and grants. Upstream editing and PR creation are separate work. Roadmap alignment This implements the Skills Manager direction in ROADMAP.md. The maintainer requested this scope and reviewed the component and full-app journey stories before implementation. Related reports: Refs #10285, Refs #10949, Refs #13464. Related work: #14356, #13656, #9268. ## What Changed - Add source and entry records, an idempotent migration, company-scoped APIs, and legacy GitHub import adoption. - Reuse current caller grants and credential refresh. Combine and deduplicate repository inventories across accessible connections. Pasted public URLs also prefer the active user’s authorized connections. Tokens stay in the Git child environment, never argv or disk. - Fetch a shallow Git snapshot at one immutable commit. Scan the full local tree, including hidden and nested folders. Read Git objects without checkout or archive transformations and enforce nested package boundaries. - Bound Git downloads to 128 MiB and three minutes. Cancel active process groups and remove incomplete downloads. Preserve cancellation and deadlines while progress drains; close stalled HTTP progress streams after 30 seconds. Reuse caller-scoped temporary snapshots for preview/import after reauthorization. - Index repository package boundaries once and cap expanded work at 1,000 packages, 10,000 files, and 100 MiB, including repeated copies of shared blobs. Bound path depth and the shared path index. Discovery keeps audited manifests without retaining all package bodies. - Resolve moving branches before fetching so unchanged discovery reuses caller-scoped snapshots. Limit active scans, scan frequency, and new downloads per caller and company; quotas apply before metadata reads and across connections, and cached scans do not consume the download quota. - Store complete versions with script content, binary bytes, and executable modes. Preserve these through copies, runtime caches, and runner packaging. - Stage downloads before publication. Use source leases, revision checks, and transactional activity records. Keep installed versions after failures, upstream deletion, deselection, and disconnect. - Add the approved import flow, Sources page, selection tree, provenance, read-only Studio behavior, and saved return from GitHub setup. - Add package manifests, commit-pinned file previews, and separate runtime requirements and reference warnings. Supporting files are included together; nested skills remain independently selectable. Preview requests reauthorize the caller and re-audit package content. - Show installed skills as compact links beneath each source. Repository titles open GitHub. Keep Refresh, Select skills, and Disconnect source in a three-dot menu. Source rows omit the branch, imported count, and refresh timestamp; action alignment and repository titles work at narrow widths. - Stream discovery metadata over an opt-in NDJSON response. Show measured Git download progress and real package/file counts, animate newly checked skills, support cancellation, and require a complete scan before selection. Keep the existing JSON API. - Retain component stories and add a separate full-app journey story group. Include fixed progress states and interactive scan, large-repository, interruption, and saving stories. - Update Skills documentation and product contracts. Suppress private GitHub skill references in telemetry. Privacy review requested for the telemetry changes. ## Verification - Local repository typecheck, full build, token gates, and Storybook build passed during this work. Focused transport, authorization, scanner, persistence, route, and UI tests pass. The final UI refinement passes all eight focused UI tests, UI typecheck/build, and token gates. The scanner resource and repeated-discovery fixes pass 132 focused scanner, transport, authorization, source-service, route, and rate-limit tests, plus server typecheck/build. Full-suite verification comes from CI; the older full local Vitest run was stopped after unrelated chat failures and a font-test failure, all of which passed in fresh focused runs. At commit `1098d5996`, all 54 active checks pass; two optional Storybook jobs are skipped. CI covers repository typecheck, build, the full test suites, browser shards, and the canary dry run. Greptile is 5/5 with no open findings; the security scan also passes. - Adversarial scanner tests verify repeated-blob byte accounting with and without declared sizes, package/file/path caps, one-time repository indexing, metadata-only discovery audits, and nested package boundaries. Additional tests cover branch movement, snapshot reuse, caller/company quotas, isolation across connections, active-lease cleanup, quota recovery, and rejection before any metadata API call. - Real Git tests verify hidden paths, exact binary bytes, executable modes, export-ignore preservation, symlink/submodule reporting, pinned commits, caller-scoped cache reuse, cancellation, cleanup, and credential isolation. Regression tests hold both download slots with permanently blocked progress callbacks, verify timeout/cancellation cleanup and retry, and exercise HTTP backpressure cancellation. Access tests cover automatic public-URL connection selection and revoked grants. Database tests verify company and grant audiences. - Live isolated browser test: the public `anthropics/skills` scan now completes and discovers all 20 skills without connecting an account. Imported canvas-design with all 83 files, opened it from Sources, and verified the installed binary-font preview/download control. Package previews also expose the complete file inventory before import. Cancelled an active Git download and retried successfully to all 20 discovered skills; the browser displayed measured download progress. The current audits reject four other packages; eligible selections remain importable. - Browser checks verify the simplified source rows at desktop and narrow widths, keyboard navigation into the actions menu, Refresh from the menu, selection, and fixture disconnect with installed skills retained. Storybook includes a menu-open checkpoint and a 320px layout. - Storybook includes receiving/preparing download checkpoints and a timed full-app import journey, plus cancellation, retry, large-repository, and saving states. Streaming tests cover split UTF-8 frames, incomplete streams, late responses, cross-company requests, HTTP errors, and JSON compatibility. - Earlier live acceptance on this PR imported `stitch-skill` with `DESIGN.md`, assigned it to an agent, disconnected its source, and ran a successful Studio test that read both installed files. An editable copy changed independently. Both Skills variants, mobile selection, and return from GitHub setup were exercised. - Private access, revoked credentials, OAuth success return, binary/script preservation, concurrent refresh, transaction rollback, version pins, and legacy adoption have automated coverage. A real private-repository OAuth grant was not created during this test. ## Risks - The migration groups recognizable legacy imports without provider calls. Their first successful refresh completes the local package snapshot. - Reference checks are advisory. They cover Markdown links and explicit relative resource paths, not arbitrary runtime dependency graphs. Preview text is capped at 64 KiB; imported bytes remain complete. - Git must be installed on the server. Shallow fetches still download the branch snapshot, including files outside selected packages. Downloads have size/time/concurrency limits. Temporary caches are bounded and caller-scoped. GitHub API quota still applies to repository metadata and the connection picker; content no longer uses per-file API requests. Failed scans retain installed content. - Sources depend on the current caller's GitHub access. A saved connection does not grant access to another person's token. - GitHub script support and immediate manual refresh are explicit maintainer-approved requirements. The operator trusts the selected repository and accepts upstream script and executable-mode changes on refresh. Static audits are not a sandbox or a guarantee of safe code; agents may later invoke installed helpers under their runtime permissions. Import and refresh do not execute scripts, hooks, package installation, or builds. Raw URL and skills.sh imports keep their prior script restrictions. - Source originals remain read-only. Refresh affects subsequent unpinned runs; explicit pins and active runs retain their versions. - The telemetry change removes source-managed GitHub identifiers from skill-reference events. It introduces no event or field. Please review the privacy boundary. ## Model Used OpenAI Codex, based on GPT-6, with reasoning, code execution, and browser tools. The exact serving model ID and context-window size are not exposed in this session. ## Checklist - [x] I have included a thinking path that traces from project context to this change - [x] I have specified the model used (with version and capability details) - [x] I have checked ROADMAP.md and confirmed this PR does not duplicate planned core work - [x] I have searched GitHub for duplicate or related PRs and linked them above - [x] I have either (a) linked existing issues with `Fixes: #` / `Closes #` / `Refs #` OR (b) described the issue in-PR following the relevant issue template - [x] I have not referenced internal/instance-local Paperclip issues or links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip` URLs) - [x] My branch name describes the change (e.g. `docs/...`, `fix/...`) and contains no internal Paperclip ticket id or instance-derived details - [x] I have run tests locally and they pass - [x] I have added or updated tests where applicable - [x] I have updated relevant documentation to reflect my changes - [x] I have considered and documented any risks above - [x] All Paperclip CI gates are green - [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups - [x] I will address all Greptile and reviewer comments before requesting merge --------- Co-authored-by: Paperclip <noreply@paperclip.ing>	2026-09-30 13:32:58 -05:00
DottaandPaperclip	25c422ba7e	fix(apps): request minimal Google service scopes (#14740 ) ## Thinking Path > - Paperclip is the open source app people use to manage AI agents for work. > - Google connections give agents service-specific tools through governed credentials. > - Each connection has a reviewed OAuth scope set. > - Docs, Sheets, and Slides request Drive permissions in addition to their own service scopes. > - Google documents these permissions as alternatives, not combined requirements. > - This pull request removes those extra permissions and redundant Calendar write free/busy access. > - Users grant fewer permissions without adding tools or changing connection access policy. ## Linked Issues or Issue Description Refs #13820. Related #14739 changes other connector permissions; it does not reduce these Google profiles. Companion broker PR: https://github.com/paperclipai/paperclip-cloud/pull/615. Ship the matching changes together after fresh-grant validation. What happened? Seven Google profiles request redundant scopes. Docs, Sheets, and Slides request Drive scopes. Calendar write requests free/busy even though calendar.events authorizes its availability tool. Expected behavior Each profile requests only the scopes required for its reviewed tools. Managed and customer-owned OAuth methods use the same set. Steps to reproduce Inspect the Google profile registry and the four app definitions on the base commit. Compare their scope sets with Google's MCP authorization alternatives linked in the updated documentation. Paperclip version or commit Base: `94e8dec56b`. Deployment mode Hosted and self-hosted Google Workspace connections. ## What Changed - Docs, Sheets, and Slides read profiles request only their service read-only scope. Write profiles request only their service write scope. - Calendar write keeps calendar-list read-only and event access. Calendar read keeps free/busy. - Apply these sets to managed and customer-owned OAuth methods and their exact-scope tests. - Document scope rationale, old-grant behavior, and the coordinated broker rollout. - Preserve the 21-scope integration union. Drive and Workspace Search still need their own Drive permissions. ## Verification - `pnpm exec vitest run packages/shared/src/app-definitions.test.ts`: 25 passed. - `pnpm -r typecheck`: passed with repository-pinned pnpm 9.15.4 after refreshing locked dependencies. - `pnpm build`: passed with repository-pinned pnpm 9.15.4. - `pnpm test:run`: attempted on the machine's Node 26 runtime, then interrupted after unrelated suite/collection failures. This is NOT a passing full-local-suite result. CI uses Node 24. - Node 24 focused diagnostic rerun: `workspace-runtime-exposure.test.ts` and `paperclip-control-plane-port.test.ts`: 43 passed, 3 skipped. The first suite hit a local preview-readiness timeout in CI; the failed shard passed its single retry without code changes. - Node 24 rerun of the three local assertion-failure suites (`chat-discord-adapter-patch`, `ai-connections`, and `heartbeat-active-run-output-watchdog`): 133 passed. These files were not changed. - Node 24 rerun of the changed manifest contract suite: 25 passed. - Latest-head GitHub checks are green at `da85dcbc89c44d88f3cabd5ada142c922fa51a3c`: 54 passed, 2 intentionally skipped; no failed or pending checks. Includes typecheck, build, general/serialized tests, all 8 browser E2E shards, Runner verification, and canary packaging. Greptile 5/5, no review threads. - Cross-repository comparison: all 16 app and broker profiles match exactly. - `git diff --check`: passed. - Google definitions are reviewed JSON source inputs preserved by the ingestion script. The generated TypeScript registry imports them; no generic provider regeneration is needed. - Fresh minimal-grant provider testing is outstanding. No new video was recorded, and existing broader credentials are not proof of minimal authorization. ## Risks The Cloud broker must ship the matching exact scope sets. Mixed versions fail closed. Validate fresh grants in staging before production. Existing provider tokens are not retroactively narrowed; affected managed connections must reconnect if their grants retain extra scopes or omit explicit scope evidence at refresh. Do not revoke the shared Google project to migrate one connection. This change does not grant access, add tools, or alter the Google Chat unread-filter block. ## Model Used OpenAI Codex, GPT-5-based coding agent, with reasoning, code execution, and browser tools. The exact runtime model ID and context-window size were not exposed to the agent. ## Checklist - [x] I have included a thinking path that traces from project context to this change - [x] I have specified the model used (with version and capability details) - [x] I have checked ROADMAP.md and confirmed this PR does not duplicate planned core work - [x] I have searched GitHub for duplicate or related PRs and linked them above - [x] I have either (a) linked existing issues with `Fixes: #` / `Closes #` / `Refs #` OR (b) described the issue in-PR following the relevant issue template - [x] I have not referenced internal/instance-local Paperclip issues or links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip` URLs) - [x] My branch name describes the change (e.g. `docs/...`, `fix/...`) and contains no internal Paperclip ticket id or instance-derived details - [x] I have run tests locally and they pass - [x] I have added or updated tests where applicable - [x] I have updated relevant documentation to reflect my changes - [x] I have considered and documented any risks above - [x] All Paperclip CI gates are green - [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups - [x] I will address all Greptile and reviewer comments before requesting merge Co-authored-by: Paperclip <noreply@paperclip.ing>	2026-09-30 13:10:42 -05:00
DottaandPaperclip	94e8dec56b	fix(runner): preserve tool outcomes through shutdown and restart (#14734 ) ## Thinking Path > - Paperclip is the open source app people use to manage AI agents for work. > - The runner sends authorized tool calls to the server and saves their results. > - A provider turn can stop while a server write is still running. > - The old shutdown path invented a failed result that could conflict with the real result. > - Truncated execution input and incomplete recovery records made the failure harder to diagnose. > - This pull request preserves exact inputs and actual outcomes through shutdown and restart. > - Tests force the race and crash boundaries so safe retries do not repeat writes. ## Linked Issues or Issue Description What happened? Stopping a turn during a server tool call could record a false failure, then reject the actual result as a conflict. The diagnostic input formatter could truncate instruction content before execution. A crash during saved-result delivery could leave that delivery permanently indeterminate. Cleanup could hide the first failure, and a retry could overwrite earlier run logs. Expected behavior Keep dispatched tools pending until their actual result is known. Preserve accepted input bytes. Accept identical result delivery without failing the task. Reject conflicting results with enough evidence to diagnose them. Recover saved-result delivery without repeating the business operation. Steps to reproduce 1. Hold an instruction update at the filesystem commit barrier. 2. Stop its provider turn before the server returns the result. 3. Release the write, deliver its result, and replay the same result. 4. Repeat with a restart before and after the delivery receipt is saved. 5. Check that there is one write and one audit row, and that the exact result survives. Paperclip version or commit The change was developed from `44736c9c7` and rebased onto `0e5830887`. Deployment mode Self-hosted server with the native runner. Tests use local runner processes, scripted providers, and PostgreSQL. Related work: #12353 added durable semantic tool receipts; #12384 added durable Codex tool recovery; #12404 bound semantic tools to ACPX sessions. #14633 covers separate native-provider cancellation and qualification work. This PR addresses server semantic-tool outcomes and their durable delivery. No duplicate fix was found. AgentMail discovery is outside this PR. ## What Changed - Close turn admission without inventing results for dispatched tools. Keep pending calls and accept late actual results. - Accept identical result replay with a diagnostic warning. Include call identity and both result hashes in real conflict errors. - Preserve exact execution arguments. Reject prohibited or oversized input before dispatch. Keep diagnostic previews redacted and bounded. - Commit instruction-attempt evidence before the filesystem write. Save completed mutation receipts so concurrent and restarted duplicates return the first result. Recheck authorization before replay. An attempt without a completed result stays unknown and cannot execute again. Definite pre-write failures save and replay their original error without another write. - Recover an interrupted saved-result delivery only for backends with durable result receipts. Never replay an ordinary business operation with an unknown outcome. - Preserve the initiating error when cleanup also fails. Record incomplete settlement evidence. Propagate typed unknown-outcome errors through the native tool wrapper without creating a false completed tool result. - Append run-log attempts and restore the durable log before appending after local file loss. Reject incomplete restores. Publish a restored prefix only if the destination is absent so concurrent attempts cannot overwrite new lines. - Add deterministic race, crash, replay, authorization, exact-content, and log-restoration tests. Document their assertions in `packages/paperclip-runner/docs/durable-recovery.md`. ## Verification - Current head: `7e088f4c7fba8ebabf98ae95485a5753b013d489`. All 55 applicable checks pass; four conditional/manual checks are skipped. This includes build, typecheck, Rust, both runner TypeScript shards, server and workspace tests, all eight browser shards, isolated runner compilation, and the clean-install release dry run. [CI run](https://github.com/paperclipai/paperclip/actions/runs/36746101110). - Greptile reviewed this exact head at 5/5 with zero new findings. All three earlier review threads are resolved. - Focused local verification includes 11 instruction integration tests, 23 surrounding authority/tool tests, 26 run-log tests, and 169 controller/driver tests. The post-rebase controller/transport/runtime selection passed 415 tests. The full Rust release suite passed 617 tests with two ignored. The real-process SIGKILL recovery test passed three consecutive runs. - The fault matrix in `packages/paperclip-runner/docs/durable-recovery.md` uses explicit barriers, real PostgreSQL rollback, durable journal reloads, and killed runner processes. It covers late results, identical and conflicting replay, exact long content, concurrent log restoration, lost commit acknowledgements, and definite failure replay after the original CAS base becomes valid again. No paid model calls are needed. - Full local recursive typecheck and build passed during implementation. Server typecheck and the runner TypeScript build passed after the review fixes. The broad local repository test run was stopped after repeated database startup timeouts. Four timing/launch failures in an earlier broad runner run passed focused reruns without changed assertions or timeouts. These are local verification limitations; the complete current-head CI suite is green. An earlier CI workspace job received an infrastructure shutdown signal; its current-head replacement passed. ## Risks - A stopped turn can remain blocked when a dispatched operation has no proven result. The system does not guess its outcome or rerun its effect. - Conflicting results still fail settlement. Existing failed or conflicting journals are not repaired automatically. - Accepted semantic input is limited to 480 KiB of encoded JSON to fit the encrypted transport. Larger input fails before execution. - Instruction filesystem writes and database receipts are not one atomic storage operation. A separately committed attempt and audit record survive rollback. An attempt without a completed success or definite pre-write failure receipt remains blocked as an unknown outcome. It is not replayed or reported as success. - Run-log restoration now reads the durable object before appending when the local log is missing. Failed or incomplete reads reject the append. - No schema migration, dependency change, workflow change, or AgentMail change is included. ## Model Used OpenAI Codex, GPT-6, with reasoning, tool use, code execution, and test analysis. The exact served model ID and context-window size are not exposed in this session. ## Checklist - [x] I have included a thinking path that traces from project context to this change - [x] I have specified the model used (with version and capability details) - [x] I have checked ROADMAP.md and confirmed this PR does not duplicate planned core work - [x] I have searched GitHub for duplicate or related PRs and linked them above - [x] I have either (a) linked existing issues with `Fixes: #` / `Closes #` / `Refs #` OR (b) described the issue in-PR following the relevant issue template - [x] I have not referenced internal/instance-local Paperclip issues or links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip` URLs) - [x] My branch name describes the change (e.g. `docs/...`, `fix/...`) and contains no internal Paperclip ticket id or instance-derived details - [x] I have run tests locally and they pass (focused suites; the broad local run limitation is recorded above) - [x] I have added or updated tests where applicable - [x] I have updated relevant documentation to reflect my changes - [x] I have considered and documented any risks above - [x] All Paperclip CI gates are green - [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups - [x] I will address all Greptile and reviewer comments before requesting merge --------- Co-authored-by: Paperclip <noreply@paperclip.ing>	2026-09-30 11:54:56 -05:00
Nicky LeachandPaperclip	af5c2d101c	fix(paperclip-runner): deliver the shutdown settlement event past the terminal-turn gate (#14668 ) ## Thinking Path > - Paperclip is the open source app people use to manage AI agents for work > - The OpenCode driver maps provider events to runtime request events > - A provider turn can end before a pending runtime request receives its answer > - The consumer reads one turn's events and stops at that turn's terminal event > - A settlement event that arrives after that terminal event never reaches the consumer > - This pull request settles the request inside its own turn, before the terminal event > - The benefit is reliable request settlement without weakening late-frame protection ## Linked Issues or Issue Description What happened? A pending runtime request stayed open after an OpenCode turn failed through `session.error`. Session shutdown then dropped its settlement event as a late provider frame. Expected behavior The driver must deliver `runtime_request.expired` with the original `turnId` and `itemId`, inside the same single read pass the consumer performs on that turn. Steps to reproduce 1. Start an OpenCode turn that creates a native runtime request. 2. Leave the request pending and fail the turn through `session.error`. 3. Close the session and inspect the emitted events. Paperclip version or commit `22d41c6081f05658e0d7c8485d0f22f35af4a79e` Deployment mode Built from source with the OpenCode driver test fixture. ## What Changed - Settle a pending runtime request as soon as its own turn goes terminal, before the terminal turn event. - Add an optional `bypassTerminalTurnGate` parameter to the OpenCode session emitter, and set it on the settlement emit. - Keep a settlement loop in session close as a fallback for a request whose turn never went terminal. - Add a fixture trigger and a regression test that reads one turn in a single pass. - Keep the late provider frame gate unchanged for every provider event path. ## Verification - Run `pnpm vitest run packages/paperclip-runner/src/drivers/opencode/opencode-server-driver.test.ts`. - Run `tsc -p tsconfig.json --noEmit` in `packages/paperclip-runner`. - Run `tsc -p tsconfig.surfaces.json --noEmit` in `packages/paperclip-runner`. - Confirm that the regression test receives `runtime_request.expired` with the original identifiers. - Confirm that the late-frame tests still report dropped provider frames. ## Risks Four call sites now reach the settlement path: session close and the three terminal turn paths (completed, cancelled, and failed). At the three terminal turn paths the turn is still the active turn, so the gate admits the settlement event with or without the parameter. Session close is the only place where the parameter changes the result of the gate, and only for a request whose turn already ended. Every provider event path keeps the existing terminal-turn gate. The known driver test failure is pre-existing and does not touch this change. ## Model Used Claude Sonnet 5, with code execution and test assistance. ## Checklist - [x] I have included a thinking path that traces from project context to this change - [x] I have specified the model used (with version and capability details) - [x] I have checked ROADMAP.md and confirmed this PR does not duplicate planned core work - [x] I have searched GitHub for duplicate or related PRs and linked them above - [x] I have either (a) linked existing issues with `Fixes: #` / `Closes #` / `Refs #` OR (b) described the issue in-PR following the relevant issue template - [x] I have not referenced internal/instance-local Paperclip issues or links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip` URLs) - [x] My branch name describes the change (e.g. `docs/...`, `fix/...`) and contains no internal Paperclip ticket id or instance-derived details - [x] I have run the changed tests locally; the known pre-existing failure remains documented above - [x] I have added or updated tests where applicable - [x] I have updated relevant documentation, or no documentation change applies - [x] I have considered and documented any risks above - [x] All Paperclip CI gates are green - [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups - [x] I have addressed all Greptile and reviewer comments before requesting merge --------- Co-authored-by: Paperclip <noreply@paperclip.ing>	2026-09-30 09:48:14 -07:00
DottaandPaperclip	3c561642b4	fix(chat): resolve approvals and preserve unanswered questions (#14613 ) ## Thinking Path > - Paperclip is the open source app people use to manage AI agents for work. > - Agents ask for decisions and optional details through cards in chat. > - A clear approval in a message can leave the matching card pending. > - An unanswered question can also block an unrelated later reply. > - Decisions need a saved source message, while optional questions need to remain answerable in history. > - This pull request records conversational decisions and lets users move on from questions and answer them later. ## Linked Issues or Issue Description What happened? Native Claude and Codex could act on approval in chat while the original approval card stayed pending. Pending question forms stayed above the composer, were absent from history, and could suppress later chat replies. A late native question answer could wait for a finished run to reconnect. Expected behavior The active agent records a clear approval or refusal against the exact card and user message. Ambiguous replies do not grant consent. Users can send another message without answering a question. The question remains pending in history and can be reopened and answered later. The saved answer reaches the agent. Steps to reproduce 1. Ask an agent to propose work with a confirmation card, then approve it in chat. 2. Check that the original card records that approval before work starts. 3. Ask an interactive question, send an unrelated message, and reload. 4. Open the unanswered question from history and submit an answer. Related work: #14408 added completion delivery. #14607 tests completion reporting turns. Neither records conversational answers on approval cards. ## What Changed - Add a confirmation endpoint backed by a user comment, with schema validation, OpenAPI discovery, and native Plan-mode access. Ask mode remains read-only. - Check company, active run, actor, current session, message provenance, revision, and resolver policy. Save the decision and audit in one transaction. Retries do not repeat effects. Emit resolution telemetry after commit. - Give fresh and resumed chat turns the actual pending confirmation identities. Teach agents to save clear conversational decisions before acting and to clarify ambiguity. - Keep unanswered Agent Chat questions as compact history entries. A newer user message closes the old form. Question cards never contribute to composer pending counts or navigation, including after dismissing a fresh form. The history card is the sole reminder; clicking it restores that exact form and draft. - Preserve Agent Chat questions when later messages or questions arrive. Historical ordinary inputs no longer gate later chat replies. Current-run requests, task execution, and governed approvals keep their gates. Remove the special acknowledgement-publication proof helpers that this rule replaces. - Route answers to finished native runs through durable fresh-wake delivery, with existing idempotency and source-question context. Settle late replies against contiguous completed conversation turns and freeze their history replay; failed, unhandled, and newly arriving messages remain actionable. - Add real-component Storybook scenarios, database and UI regressions, and a three-turn native Claude/Codex E2E case. Capture distinct, UI-ready screenshots and report the individual assertions. ## Verification - Focused decision/publication/UI regressions after merging master: 288 passed; subsequent UI draft, failed-send, and conversation checks: 199 passed. - Native question and durable delivery regressions: 106 passed, including all four terminal run states and exactly-once late delivery. Seven targeted regressions fail against the original implementation and pass with the fix. - Latest conversation/decision/native-delivery regressions after the master merge: 121 passed. Covers completed progress, missing or failed intervening turns, new messages during a late reply, stale sessions, and frozen retry/replay boundaries. Four new assertions fail before the ordering fix. - E2E support suite after the master merge: 792 passed. Negative controls reject expired cards, wrong questions/answers, stale or missing replies, unrelated clarification forms, and unexpected tasks. - The embedded-browser walkthrough caught one additional defect: dismissing a fresh question still showed a composer badge. Both Cancel and close-button regressions failed before the fix. The fix at `65f2ade12` passes 170 chat-thread tests and 792 E2E support tests. After merging master, 232 chat-thread/confirmation tests, server/UI typechecks, and token gates pass. The preview and two-provider live E2E pass at `e5512a206`; Greptile is 5/5 with zero unresolved threads at that commit. All 55 checks are now successful at `e5512a206` (four conditional checks skipped), including the aggregate verification gate and clean-install canary test. The first attempt was interrupted by simultaneous CI worker shutdowns; one failed-job rerun passed without code changes. - [Published Storybook](https://d1p6rlowie26tp.cloudfront.net/storybook/branches/codex~2Fchat-approval-resolution/?path=/story/chat-comments-agent-chat-unanswered-questions--moved-on): nine real-component scenarios. Manually exercised move on, reopen, preserve draft, answer later, answer one of multiple questions, and a custom mobile answer in the embedded browser. Retested fresh Cancel and close-button dismissal in the updated build, then reopened and submitted the preserved Green selection and inspected its answered receipt. Static preview has no live model/backend; its callbacks are fixture responses. - [First live campaign](https://d1p6rlowie26tp.cloudfront.net/runner-e2e/campaigns/gha-36714504406-1/) reproduced the late-answer completion-state defect on both providers despite correct saved answers and acknowledgements. It also exposed a valid imperative clarification rejected by the old oracle. Both issues are fixed with regression controls; this failing run is retained as evidence. - [Four-cell qualification](https://d1p6rlowie26tp.cloudfront.net/runner-e2e/campaigns/gha-36717804064-1/) passed 4/4 at `2bf8a1009`: unanswered-question return and ambiguous confirmation, each on native Claude and Codex. Inspected saved state, source-message decisions, visible cards, and agent replies. Both late-answer chats settled to waiting; no unrequested tasks were created. [Final branch rerun](https://d1p6rlowie26tp.cloudfront.net/runner-e2e/campaigns/gha-36719666238-1/) passed 2/2 at `142630720`: the same unanswered-question journey after merging master, plus an additional screenshot and browser assertion for the actual late-answer acknowledgement. - [Composer-reminder E2E](https://d1p6rlowie26tp.cloudfront.net/runner-e2e/campaigns/gha-36727006818-1/) passed 2/2 at `5b62c52d9`: native Claude and Codex, three turns each, with explicit no-badge assertions before and after reload. Inspected saved pending/answered state, both screenshots with a clear composer, and actual Blue acknowledgements; all five behavioral matchers passed per provider and neither created tasks. Cost coverage is partial; this is bounded workflow qualification. - [Fresh-dismissal E2E](https://d1p6rlowie26tp.cloudfront.net/runner-e2e/campaigns/gha-36742773318-1/) passed 2/2 at `e5512a206`: native Claude and Codex, including fresh Cancel, clear composer, reopen, unrelated message, reload, late Blue answer, and actual agent acknowledgement. All five behavioral matchers pass per provider. Inspected the fresh-dismissal screenshots and saved pending/answered identity; neither created tasks. Cost coverage is partial (4/6 runs). - Prior evidence remains available in [the earlier campaign](https://d1p6rlowie26tp.cloudfront.net/runner-e2e/campaigns/gha-36642252725-1/). Its early loading screenshot and overwritten final capture prompted the UI-ready, distinct screenshot fixes. ## Risks - The model interprets intent. The server verifies permission and provenance; it does not infer consent from text. Ambiguous and unrelated replies are not approvals. - Historical questions can accumulate. They remain visible, pending, and answerable; no automatic answer or expiry is invented. - The change to completion gates is scoped to Agent Chat and ordinary historical inputs. Current-turn and governed approvals retain their existing controls. - Live qualification is limited to the selected stories. Broader native onboarding finalization remains separate work. - No database migration. Telemetry adds no fields or values; the contract and README document the commit boundary. Privacy review was requested on the PR. ## Model Used OpenAI Codex, GPT-6 family, with reasoning, repository tools, code execution, and browser-test orchestration. The exact model ID and context-window size are not exposed to this session. ## Checklist - [x] I have included a thinking path that traces from project context to this change - [x] I have specified the model used (with version and capability details) - [x] I have checked ROADMAP.md and confirmed this PR does not duplicate planned core work - [x] I have searched GitHub for duplicate or related PRs and linked them above - [x] I have either (a) linked existing issues with `Fixes: #` / `Closes #` / `Refs #` OR (b) described the issue in-PR following the relevant issue template - [x] I have not referenced internal/instance-local Paperclip issues or links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip` URLs) - [x] My branch name describes the change (e.g. `docs/...`, `fix/...`) and contains no internal Paperclip ticket id or instance-derived details - [x] I have run tests locally and they pass - [x] I have added or updated tests where applicable - [x] I have updated relevant documentation to reflect my changes - [x] I have considered and documented any risks above - [x] All Paperclip CI gates are green - [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups - [x] I will address all Greptile and reviewer comments before requesting merge --------- Co-authored-by: Paperclip <noreply@paperclip.ing>	2026-09-30 11:46:46 -05:00
DottaandPaperclip	a36cbffa9e	fix(connections): broaden natural-language and aggregator search (#14725 ) ## Thinking Path > - Paperclip manages agents and the services they need for work. > - Agents use connection search to discover a setup path before they request access. > - Tool-only filtering hid channel and AI methods from this search. > - Requiring every query word to match rejected normal task descriptions. > - A small aggregator index also omitted supported apps such as Circleback. > - This pull request broadens retrieval and returns purpose-specific setup guidance. > - Agents can choose a relevant result while existing access and provider-choice checks still apply. ## Linked Issues or Issue Description What happened? A search such as “AgentMail create an email address and manage an agent mailbox” returned no usable result. “Help me find tools for circle back” also missed Composio's supported Circleback toolkit. Queries longer than 200 characters failed validation. Expected behavior Return useful native and verified aggregator matches from natural-language queries. Include channel/email methods when Chat connectors is enabled. Identify each method's purpose and the correct setup path. Steps to reproduce Use the queries above with `connections_search` from an active task. Enable Chat connectors for the AgentMail case. The regression suite reproduces these misses before the change. Related routing work: #13941. This change does not change the runner failure path or add channel setup to tool-only connection cards. ## What Changed - Rank name and capability matches. Accept extra words, split names, small spelling errors, and queries up to 4,000 characters. - Include tool, channel/email, and AI methods. Return company-prefix setup links for channel and AI flows. - Add a dated snapshot of 1,583 official Composio toolkit names and a refresh script. Merge duplicate MCP variants for search and link each support claim to official evidence. - Find authorized indexed aggregator namespaces within longer queries. Return multiple app matches when the agent needs to choose. - Prefer exact app names over fuzzy matches for other apps; retain existing AI readiness. - Preserve native preference, company and identity boundaries, administrative denials, and saved provider consent. - Add relevance and database regressions, extend native tool-authority coverage, and document search behavior. ## Verification - Red: 15 new assertions failed against the previous implementation; the existing baseline passed. Added red-green regressions for Motion versus fuzzy Notion and existing AI access during review. A further regression covers mixed ready/unconfigured AI results and their per-result setup guidance. - Green: all 103 tests in the eight focused shared, database, runtime-tool, fixture, and route suites pass on the latest commit. - `pnpm -r typecheck` and `pnpm build` passed. - Latest-commit CI passed: 54 successful checks and two skipped checks, including the full test matrix, browser E2E, typecheck, build, and canary dry run. - The long local `pnpm test:run` attempt began before the review fixes and retained transformed pre-fix search code; it also hit an unrelated timing failure. Fresh serial reruns of the affected search suites and three timeout cases passed all 124 tests. Parallel local route shards hit two additional database setup timeouts; both suites passed all 17 tests on a fresh serial rerun. The complete corresponding CI suites also passed. Duplicate broad local runs were stopped after CI completed. The local UI suite independently passed all 7,007 tests. - Greptile: 5/5 on `cc6a0180d`; all review findings resolved. - Browser verification passed in a disposable local instance through real process-agent search requests: AgentMail opened its setup flow with the requester selected; the saved Circleback choice produced the Composio setup card; a paragraph-length Notion query produced its setup card. No provider credentials or external accounts were created. - The browser test caught an invalid UUID-based setup URL. The fix uses the company prefix and has a regression assertion. - A 3,971-character catalog query found Circleback first in a local 10 ms spot check after sharing query preparation across the catalog scan. This is a single measurement, not a performance guarantee. ## Risks - Broader retrieval can return extra candidates. Named services rank first; agents must select the relevant method. - The public support snapshot can age. It proves catalog support, not account authorization or the availability of every requested action. - Channel and AI methods use existing setup links. The tool connection card still accepts tool methods only. - No schema, migration, credential, or runner lifecycle changes. ## Model Used OpenAI Codex (GPT-6). The session does not expose a more specific model identifier or context-window size. Used reasoning, repository search, code execution, tests, and browser tools. ## Checklist - [x] I have included a thinking path that traces from project context to this change - [x] I have specified the model used (with version and capability details) - [x] I have checked ROADMAP.md and confirmed this PR does not duplicate planned core work - [x] I have searched GitHub for duplicate or related PRs and linked them above - [x] I have either (a) linked existing issues with `Fixes: #` / `Closes #` / `Refs #` OR (b) described the issue in-PR following the relevant issue template - [x] I have not referenced internal/instance-local Paperclip issues or links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip` URLs) - [x] My branch name describes the change (e.g. `docs/...`, `fix/...`) and contains no internal Paperclip ticket id or instance-derived details - [x] I have run tests locally and they pass - [x] I have added or updated tests where applicable - [x] I have updated relevant documentation to reflect my changes - [x] I have considered and documented any risks above - [x] All Paperclip CI gates are green - [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups - [x] I will address all Greptile and reviewer comments before requesting merge --------- Co-authored-by: Paperclip <noreply@paperclip.ing>	2026-09-30 10:20:50 -05:00
DottaandPaperclip	dd7fc1f90a	fix: raise the native journal read limit to 256 MiB (#14711 ) ## Thinking Path > - Paperclip is the open source app people use to manage AI agents for work. > - Native sessions persist control-plane state so they can resume safely. > - The state includes committed provider history needed for recovery. > - The server, runnerd recovery, and durable control plane validate this state before trusting its identity. > - Their differing 64 MiB and 192 MiB limits can reject a valid journal before recovery. > - This pull request aligns all three local state limits at 256 MiB. > - Larger files remain bounded, while recovery can read larger valid histories. ## Linked Issues or Issue Description Refs #13882 Refs #14312 ## What Changed - Raise the server and runnerd recovery limits from 64 MiB to 256 MiB, and align the durable control-plane limit from 192 MiB to 256 MiB. - Add coverage for a valid history above 64 MiB and rejection above 256 MiB. ## Verification - Matching server recovery passed with more than 64 MiB of actual committed event payloads (128 events with 512 KiB deltas). - The real runnerd exact-authority resume regression with the test Codex provider passed with 193 MiB of valid JSON whitespace appended. It crosses the former 192 MiB core limit and confirms the same provider identity. This exercises the runner process and durable control plane with a simulated provider, not a live OpenAI API call. This test used approximately 1.15 GiB peak RSS. - The actual runnerd reader accepted valid 256 MiB JSON and rejected valid 256 MiB + 1 byte. The reader call took 231 ms; the fresh process peaked at 1,244 MiB RSS. - Server tests reject mismatched identity above 64 MiB and files above 256 MiB. - `pnpm -r typecheck`, `pnpm build`, and `git diff --check` passed. - Full local `pnpm test:run`: 13,730 passed, 575 skipped, 7 failed across 6 files. All failures were embedded PostgreSQL startup errors after five attempts. They affected agent hiring, instruction revisions, environment images, reviewed chat bindings, issue monitoring, and legacy continuation authority. The focused journal tests passed; the latest pushed head passed all ordinary CI checks. Superagent is the only blocking check. ## Risks - Open review concern: Greptile is 5/5, but Superagent is `ACTION_REQUIRED` with two P2 findings on the server and runnerd readers. Both flag the increased synchronous parsing and memory cost. This PR keeps the requested fixed-limit change small. It does not add a worker parser or a process-wide memory budget. This resource tradeoff needs review before merge. - Large state parsing is synchronous and can consume several times the file size in memory. - Remote checkpoint archive and expanded-size limits remain 64 MiB, so this change alone does not make larger remote checkpoint transfers portable. ## Model Used - OpenAI Codex, GPT-6, with delegated assistance from `gpt-6-luna` at high reasoning effort; tool use and code execution. The GPT-6 context window is not exposed in this task runtime. ## Checklist - [x] I have included a thinking path that traces from project context to this change - [x] I have specified the model used (with version and capability details) - [x] I have checked ROADMAP.md and confirmed this PR does not duplicate planned core work - [x] I have searched GitHub for duplicate or related PRs and linked them above - [x] I have either (a) linked existing issues with `Fixes: #` / `Closes #` / `Refs #` OR (b) described the issue in-PR following the relevant issue template - [x] I have not referenced internal/instance-local Paperclip issues or links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip` URLs) - [x] My branch name describes the change (e.g. `docs/...`, `fix/...`) and contains no internal Paperclip ticket id or instance-derived details - [ ] I have run tests locally and they pass - [x] I have added or updated tests where applicable - [x] I have updated relevant documentation to reflect my changes - [x] I have considered and documented any risks above - [ ] All Paperclip CI gates are green - [ ] Greptile is 5/5 with no open P2s, recommendations, or follow-ups - [x] I will address all Greptile and reviewer comments before requesting merge --------- Co-authored-by: Paperclip <noreply@paperclip.ing>	2026-09-30 10:08:25 -05:00
DottaandPaperclip	d30b03bd8c	test: add persistent E2E coverage for human blocker decisions (#14707 ) ## Thinking Path > - Paperclip manages work for AI agents. > - Agents use the coordination skill when work needs human authority or a scope decision. > - PR #14188 replaced automatic manager escalation with direct blocker handling. > - This behavior needs real browser, server, database, and provider tests. > - The test must verify saved human input, task ownership, and resumed work. > - This pull request adds six reusable Product E2E cases and improves the skill examples that they exercise. ## Linked Issues or Issue Description Refs #14188. The merged change needs repeatable behavior coverage. The new suite tests missing administrator access, missing hiring permission, and requester scope questions. Searches found no duplicate blocker-guidance suite. This extends the existing eval system described in ROADMAP.md. ## What Changed - Add the explicit-only `blocker-guidance` Product E2E suite. It has three local scenarios on legacy Codex and legacy Claude. - Use the production UI and public APIs to create work, save a human-only question or confirmation, answer it after reload, and resume the same task. - Check requester identity, ownership history, manager activity, hiring, saved answers, and completion. Keep direct text input as a separate UX result. - Save pending and final screenshots, API checkpoints, skill hashes, provider evidence, and billing data through the existing report pipeline. - Isolate the Claude fixture home. Verify the served skill bytes before dispatch so an old installed skill cannot silently replace the evaluated skill. - Improve the coordination and hiring skill examples. Include the human-only policy, requester address, wake behavior, and handling of authorized scope changes. - Grader v5 requires the exact approved public welcome note as a new worker comment. Browser input checks reject unwritable scope cards before clicking, and confirmation direction must be saved in the resolution before the worker wakes. - Add grader calibration and browser-input tests. Update the fixture guide and generated capability inventories. ## Verification - `pnpm build`: passed after rebasing onto current master. - `pnpm -r typecheck`: passed. - `pnpm test:e2e:runner:typecheck`: passed. - `pnpm test:e2e:runner:unit`: 742 tests passed. - `pnpm test:e2e:runner:browser-support blocker-input.spec.ts`: 10 tests passed. - `pnpm test:e2e:runner -- --list --suite blocker-guidance`: six cells found. - Capability inventory and generated-contract checks: passed. - `pnpm exec vitest run server/src/__tests__/hiring-operational-examples.test.ts`: four tests passed after synchronizing the generated API reference and section anchor. - Full general and serialized test suites: passed in CI on `6652cee74517039676bad6a720f213625d265acd`. The redundant local `pnpm test:run` was interrupted after complete CI coverage passed; it is not claimed as a completed local full-suite run. - Final GitHub checks: 54 passed, two optional Storybook checks skipped. The runtime-exposure startup test hit a 10-second readiness timeout once, passed a targeted local reproduction, and its CI shard passed the single retry without code changes. - Current-head Greptile: 5/5, clean check, zero unresolved threads. - Historical live measurement on September 29 at `4edc77ae2b95b10dd61426ce3f042bac00527ad9`: three independent six-cell runs scored 5/6, 6/6, and 6/6. Claude Sonnet 4.6 passed 9/9. Codex `gpt-5.6-sol` passed 8/9. These runs predate this rebase. - Version 5 changes the scope answer to an exact approved publication draft. The historical runs do not qualify that new requirement; the two-provider scope pilot at `49a1f4eab369948b9e3b34a6ce436489e875e4ec` passed Codex and failed Claude. Claude posted the correct salary-free sentence but omitted its required reference line from that comment, placing the reference in a separate completion message. The `public-welcome-note` check correctly failed. An earlier Claude database-startup failure was retained separately; its fresh-instance retry reached the model. This pilot is not a six-cell qualification. - The failed Codex scope case omitted `addresseeUserId`. The strict routing check remains. All 18 attempts had clean evidence manifests and passed cleanup. - To repeat with provider credentials: `pnpm test:e2e:runner -- --suite blocker-guidance --max-parallel 1`. This is a paid, opt-in suite and is excluded from `--all`. ## Risks - The live suite measures variable model behavior. The retained 17/18 historical result and the current 1/2 scope pilot are not all-pass qualifications. These paid cases are opt-in; their observed model failures remain visible independently of deterministic CI checks. - A separate generic task-replacement diagnostic still exposed a Claude refusal. The ordinary cases use specific business decisions. The diagnostic is not a standalone catalog case in this change. - Earlier measurements included an old installed Claude skill and test defects. Their grades remain retained and are not combined with the three final repetitions. - Skill examples can affect when agents ask for human input. Downstream permission checks still apply. - Native runners, Daytona, agent-requester routing, and real external connection authorization are outside this suite. - Raw provider traces and credentials remain private. No screenshots, raw reports, secrets, workflow changes, or lockfile changes are committed. ## Model Used OpenAI GPT-6 through Codex assisted with this change. The exact deployed variant and context window size are not exposed in this session. The assistant used reasoning, repository edits, tool use, and shell execution. The evaluated models were `gpt-5.6-sol` and `claude-sonnet-4-6`. ## Checklist - [x] I have included a thinking path that traces from project context to this change - [x] I have specified the model used (with version and capability details) - [x] I have checked ROADMAP.md and confirmed this PR does not duplicate planned core work - [x] I have searched GitHub for duplicate or related PRs and linked them above - [x] I have either (a) linked existing issues with `Fixes: #` / `Closes #` / `Refs #` OR (b) described the issue in-PR following the relevant issue template - [x] I have not referenced internal/instance-local Paperclip issues or links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip` URLs) - [x] My branch name describes the change (e.g. `docs/...`, `fix/...`) and contains no internal Paperclip ticket id or instance-derived details - [x] I have run tests locally and they pass - [x] I have added or updated tests where applicable - [x] I have updated relevant documentation to reflect my changes - [x] I have considered and documented any risks above - [x] All Paperclip CI gates are green - [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups - [x] I will address all Greptile and reviewer comments before requesting merge --------- Co-authored-by: Paperclip <noreply@paperclip.ing>	2026-09-30 07:56:54 -05:00
DottaandPaperclip	d72389bee2	feat: add Browser Use Cloud connector and live task browsers (#14627 ) ## Thinking Path > - Paperclip is the open source app people use to manage AI agents for work. > - The Apps gateway gives agents governed access to external tools. > - Browser Use Cloud can run browser work, but a tool result alone does not let a person watch or take over. > - A task needs a durable browser session, a visible viewer, and recorded costs. > - This pull request adds a Browser Use Cloud v4 connection and interactive browser tabs on tasks. > - People can follow the work, interact with the page, and retain the browser after the agent finishes. ## Linked Issues or Issue Description Problem or motivation Agents need governed access to Browser Use Cloud. People need to see and interact with the same browser from the task. A browser must remain available after a run finishes and appear at the correct point in the task feed. Proposed solution Add a native REST connection for the v4 API. Bind each session to its company, task, agent, and credential grant. Open its interactive viewer in the task side panel. Record provider costs as financial events. Use `browser-use-cloud` as the app and connector key. Keep its skill with the connector and deliver it only with authorized connection tools. Alternatives considered A v3 MCP connection would expose tools without the v4 lifecycle integration. An external viewer link would leave the task. A fixed viewer size would prevent pages from responding to changes in the task pane. Roadmap alignment This extends the governed Apps gateway and Connected Apps roadmap. It uses the existing task, grant, secret, approval, and financial records. The work was requested by the maintainer. A search found no duplicate Browser Use connector PR or issue. ## What Changed - Add the Browser Use Cloud app, brand asset, API-key connection, and profile settings under the `browser-use-cloud` key. - Bundle the `browser-use-cloud` skill with the connector. Keep it out of global `skills/` discovery. Deliver it only with authorized task/run connection tools. Remove retired connector skill keys from runtime overlays and preserve unrelated browser skills. - Expose seven v4 tools through the governed gateway and deliver them to native and CLI agents. - Persist sessions, browsers, runs, event and recovery cursors, shutdown leases, and cumulative cost accounting. Recover uncertain paid starts without replaying them. - Enforce task ownership, credential grants, approvals, revoked access, and budget limits. - Add interactive task browser tabs and compact chronological feed entries. Retain the viewer across tab switches and keep visible idle browsers open. - Add debounced automatic viewport fitting, standard size presets, and a viewer ownership lease. - Add lifecycle, authorization, accounting, viewport, UI, and Storybook coverage. - Add an idempotent database migration after the current master migration. Preserve deployed migration hashes. Migrate pre-release Cloud connection and financial keys without replacing grants, credentials, or browser history. - Document provider behavior, live acceptance results, and the lack of documented passkey forwarding. ## Verification - Full workspace typecheck and production build pass on the updated branch. - Token gates, brand asset validation, module boundaries, and migration ordering pass. - Cloud tests verify global skill exclusion, authorized task/run delivery, unassigned agents, disabled connections, revocation, adapter isolation, and secret exclusion. The existing AgentMail connector assignment test also passes. - Migration replay runs twice against existing browser work and financial records. It preserves the records and avoids duplicate costs. - The focused provider, app catalog, OpenAPI, connection gateway, and migration regression suites pass. Recovery coverage includes lost replies, process crashes, provider rejection, and browser arrival acknowledgement. - All 54 checks pass on `2974b5f03641ad0cea3c941d8c02579316fa8c92`, including the full test matrix, browser E2E shards, build, typecheck, security, and release canary. Two optional Storybook jobs are skipped. - Greptile is 5/5 on the same commit, with zero unresolved review threads. The corrected review uses the actual master-to-head diff. - The local `pnpm test:run` started and was stopped after the full CI matrix passed. It did not complete locally; the full-suite result above comes from CI. - Earlier live acceptance used an isolated company with a capped provider credential. The agent opened paperclip.ing, the embedded viewer accepted navigation, and the same browser stayed available after completion and tab switches. - The local Storybook build passes. Stories cover the panel, footer, feed entries, settings, lifecycle failures, and viewport modes with an offline viewer fixture. ## Risks - Browser Use charges for hosted work. Provider caps and local budget checks reduce exposure; reported costs can arrive after work completes. - Viewer and CDP URLs grant access to the browser. The server validates and restricts them. They are excluded from agent results and durable event data. - Runtime resizing of v4 agent browsers uses a provider option confirmed by live testing but absent from its published agent schema. Resizing during a click may invalidate coordinates. Fixed presets remain available. - Viewport ownership is process-local and resets on restart. The lifecycle and accounting records remain in the database. - The original intermittent embedded-viewer stall has not been fully diagnosed. A bounded reconnect and active-session recovery cover the observed failure paths. - Live tests did not cover every revocation, approval, rate-limit, or restart case. Deterministic integration tests cover those paths. Passkey forwarding is not claimed. - Unknown create outcomes keep the credential available for cleanup. Run-list absence cannot prove a paid POST was rejected, so recovery stays pending until it can identify provider work. ## Model Used OpenAI Codex, GPT-6. Used reasoning, repository search, code execution, browser interaction, and test tools. The exact serving model ID and context-window size were not exposed in this session. ## Checklist - [x] I have included a thinking path that traces from project context to this change - [x] I have specified the model used (with version and capability details) - [x] I have checked ROADMAP.md and confirmed this PR does not duplicate planned core work - [x] I have searched GitHub for duplicate or related PRs and linked them above - [x] I have either (a) linked existing issues with `Fixes: #` / `Closes #` / `Refs #` OR (b) described the issue in-PR following the relevant issue template - [x] I have not referenced internal/instance-local Paperclip issues or links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip` URLs) - [x] My branch name describes the change (e.g. `docs/...`, `fix/...`) and contains no internal Paperclip ticket id or instance-derived details - [x] I have run tests locally and they pass - [x] I have added or updated tests where applicable - [x] I have updated relevant documentation to reflect my changes - [x] I have considered and documented any risks above - [x] All Paperclip CI gates are green - [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups - [x] I will address all Greptile and reviewer comments before requesting merge --------- Co-authored-by: Paperclip <noreply@paperclip.ing>	2026-09-30 07:13:16 -05:00
DottaandPaperclip	f4f9a7c613	test(runner): guard continuation after journals exceed 2 MiB (#14312 ) Add an actual runner resume regression above the former 2 MiB journal boundary and an explicit-only three-turn Daytona workflow that grows real execution history. Verify journal size and distinct completed tool calls without exporting private payloads. Co-Authored-By: Paperclip <noreply@paperclip.ing>	2026-09-30 07:01:45 -05:00
DottaandPaperclip	2f6fa3b6dc	fix: recover provider authentication inside tasks (#14629 ) ## Thinking Path > - Paperclip is the open source app people use to manage AI agents for work. > - Agents need a working model provider connection to run a task. > - A provider can reject a stored credential after the task starts. > - The failed run must ask the responsible user to repair that connection. > - This pull request adds that request directly to the task and reuses Connections sign-in. > - The user can choose an API key or subscription, then continue the task with a fresh session. ## Linked Issues or Issue Description What happened? A run that ended with `acpx_auth_required` or another known provider authentication error did not immediately offer an inline way to connect the provider. A repair form could also lock the user to the failed account's sign-in method. Expected behavior Show a provider connection card in the task as soon as the authentication failure is saved. Allow the responsible user to connect or repair the provider with any supported sign-in method. Keep the connection name automatic and resume the task after successful setup. Steps to reproduce 1. Run a task with a supported provider and an expired or invalid credential. 2. Let the run fail with a provider authentication error. 3. Open the task and attempt to repair the connection. Related work: Refs #13724 and #13726. This change adds the inline task repair flow and method choice. ## What Changed - Classify provider authentication failures and create one connection request for the current task. A persisted blocked classification suppresses automatic retries only after the repair card is created; unsupported providers retain their existing recovery path. - Mark only the attributed, unchanged credential as needing sign-in. Preserve credentials that were refreshed after the failed run started. - Reuse the provider sign-in controls inside the task. Allow API key and subscription choices for Claude, Codex, and Grok. Keep names hidden and generate a default from the user, provider, and method. - Keep the existing account when reconnecting with the same method. Create and select another account when the method changes. Validate updates to explicit agent bindings through the normal agent save path. - Require explicit adoption for legacy agent authentication. Validate in the agent environment, then commit the binding, connection install, audit, and card completion in one transaction. Keep failed setup and account selection visible and retryable. - Add regression tests and update the specification and Connections documentation. ## Verification - Fresh local verification: 199 tests passed across the inline form, provider method selector, default naming, authentication and recovery classifiers, run liveness, OpenAPI routes, database adoption/rollback, and Cursor execution suites. The adoption database suite also passed against disposable Docker PostgreSQL. - Full repository `pnpm build` and `pnpm -r typecheck` passed on the latest commit. Token gates are clean. - Embedded browser: opened real task cards from seeded authentication failures; switched Claude from API key to subscription and back; switched Codex from subscription to API key; confirmed the name field stays hidden. Provider sign-in was not completed with real credentials. - The broad local `pnpm test:run` started before review fixes and was interrupted after the working tree changed; it is not counted as a passing full run. Fresh focused tests passed. CI supplies the full test and browser suite results for the current commit. - CI is green on commit `4b97a4e447045ff3d7516525a187a5d1d21e0d4c`: 54 checks passed and two Storybook checks were skipped by their path rules. The workspace preview job passed on one rerun after a local-server startup timeout; its rerun passed 835 tests. - Greptile is 5/5 on the same commit with no actionable findings and no unresolved review threads. ## Risks - Incorrect authentication classification could prompt for a connection unnecessarily. Tests exclude tool authorization, quota, and unrelated runtime failures. - A method change selects the new personal provider default, which also applies to other agents that use that user's default. Explicit account bindings use the existing permission and runtime validation path. - Credential invalidation must not race with refresh or reconnect. The code compares the saved credential generation and grant update time under locks. - No database migration or new credential storage format is required. ## Model Used OpenAI GPT-6 through Codex. The exact model ID and context window size were not exposed in this session. Capabilities used: reasoning, repository editing, shell commands, database tests, and embedded-browser interaction. ## Checklist - [x] I have included a thinking path that traces from project context to this change - [x] I have specified the model used (with version and capability details) - [x] I have checked ROADMAP.md and confirmed this PR does not duplicate planned core work - [x] I have searched GitHub for duplicate or related PRs and linked them above - [x] I have either (a) linked existing issues with `Fixes: #` / `Closes #` / `Refs #` OR (b) described the issue in-PR following the relevant issue template - [x] I have not referenced internal/instance-local Paperclip issues or links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip` URLs) - [x] My branch name describes the change (e.g. `docs/...`, `fix/...`) and contains no internal Paperclip ticket id or instance-derived details - [x] I have run tests locally and they pass (focused tests listed above) - [x] I have added or updated tests where applicable - [x] I have updated relevant documentation to reflect my changes - [x] I have considered and documented any risks above - [x] All Paperclip CI gates are green - [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups - [x] I will address all Greptile and reviewer comments before requesting merge --------- Co-authored-by: Paperclip <noreply@paperclip.ing>	2026-09-30 06:39:37 -05:00
Nicky LeachandPaperclip	eb31b926a1	fix(runner): keep the OpenCode session event stream open across turns (#14582 ) ## Thinking Path > - Paperclip is the open source app people use to manage AI agents for work > - Paperclip Runner keeps provider sessions and their event streams for agent runs > - The OpenCode driver closed its event queue after each terminal turn > - A second turn on the same session then lost its response and completion events > - This pull request keeps the queue open between turns and rejects late events for sealed turns > - The benefit is reliable multi-turn OpenCode sessions with visible diagnostics for late provider events ## Linked Issues or Issue Description What happened? The OpenCode driver closed its event queue when a turn completed, was cancelled, or failed. A second turn on the same session then lost its response and completion events. Expected behavior The session must keep its event stream open between turns. Each turn must deliver its response and one terminal event. The session must close the stream only during session shutdown or an unrecoverable pump error. Steps to reproduce 1. Start one OpenCode session. 2. Run one turn and wait for its terminal event. 3. Run a second turn on the same session. 4. Confirm that the second turn delivers its response and terminal event. Paperclip version or commit `c0e1d87ddc181329471fa80a2061b2c538bb6618` Deployment mode Built from source with the Paperclip Runner package test suite. ## What Changed - Keep the OpenCode event queue open across completed, cancelled, and failed turns. - Track sealed turn ids and reject later events for those turns with a diagnostic event. - Preserve queue shutdown on session close and unrecoverable pump errors. - Give each simulated fixture turn unique provider event ids. - Add regression tests for completed, cancelled, failed, and closed-session paths. ## Verification - Type check: `cd packages/paperclip-runner && node ./node_modules/typescript/bin/tsc -p tsconfig.json --noEmit` passed. - Driver tests: `cd packages/paperclip-runner && npx vitest run src/drivers/opencode/opencode-server-driver.test.ts` passed except for the known pre-existing flaky test described below. - Consumer tests: `cd packages/paperclip-runner && npx vitest run src/native-session-runtime.test.ts src/backends/harness-driver-backend.test.ts src/cli/opencode-app-server-proxy.test.ts src/conformance/harness-driver.test.ts` passed. - The known flaky test reproduced on unmodified `master` because fixture event order depends on a local MCP HTTP round-trip. - CI must run the full pull request suite. ## Risks - The queue now retains sealed turn ids for the session lifetime. OpenCode does not reuse turn ids, so this set grows with the session. - A late provider event cannot reach a later turn. The driver emits a diagnostic event so the rejection remains visible. - The change does not alter session shutdown or unrecoverable pump error handling. > For core feature work, check [`ROADMAP.md`](ROADMAP.md) first and discuss it in `#dev` before opening the PR. This pull request fixes an OpenCode Runner bug and does not add a roadmap feature. ## Model Used OpenAI Codex, GPT-5, tool use and code execution; Anthropic Claude Sonnet 5 also assisted with the implementation. The runtime did not provide a context window size. ## Checklist - [x] I have included a thinking path that traces from project context to this change - [x] I have specified the model used (with version and capability details) - [x] I have checked ROADMAP.md and confirmed this PR does not duplicate planned core work - [x] I have searched GitHub for duplicate or related PRs and linked them above - [x] I have either (a) linked existing issues with `Fixes: #` / `Closes #` / `Refs #` OR (b) described the issue in-PR following the relevant issue template - [x] I have not referenced internal/instance-local Paperclip issues or links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip` URLs) - [x] My branch name describes the change (e.g. `docs/...`, `fix/...`) and contains no internal Paperclip ticket id or instance-derived details - [x] I have run tests locally and they pass - [x] I have added or updated tests where applicable - [x] I have updated relevant documentation to reflect my changes - [x] I have considered and documented any risks above - [x] All Paperclip CI gates are green - [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups - [x] I will address all Greptile and reviewer comments before requesting merge --------- Co-authored-by: Paperclip <noreply@paperclip.ing>	2026-09-29 22:05:41 -07:00
Devin Foley	f38b5693f6	fix: always enable keyboard shortcuts (#14643 ) ## Thinking Path > - Paperclip is the open source app people use to manage AI agents for work > - The web UI has keyboard shortcuts for the inbox, task lists, cases, and task detail, plus global shortcuts such as `c`, `/`, `?`, `[`, and `]` > - Shortcut enablement was an instance-wide General setting until #14141 moved it to a per-user preference that defaults to off > - The move did not carry the old instance value over, so every existing user lost shortcuts on upgrade and had to find a new toggle under Profile settings > - A toggle that only turns off a standard, input-safe feature costs a setting, a database column, two API routes, and a React context for little benefit > - This pull request removes both the instance setting and the personal preference and enables keyboard shortcuts for every signed-in user > - The benefit is one less thing to configure, no silent loss of shortcuts on upgrade, and less code to maintain ## Linked Issues or Issue Description Refs #14141 (the change that introduced the personal preference). What existing behavior does this improve? Keyboard shortcuts in the web UI stay off unless each user turns them on in Profile settings. Subsystem affected Web UI shortcuts, Profile settings, instance general settings, the `/api/auth/preferences` routes, and the `user` table. Current behavior Shortcuts default to off per user. #14141 moved the toggle from Instance settings → General to Profile settings and did not carry the old instance value over. Users who had shortcuts on lost them after the upgrade and had to find the new toggle. Proposed behavior Keyboard shortcuts are always enabled for every signed-in user. There is no instance setting and no personal preference. Shortcuts already ignore key presses inside text inputs and modal dialogs, so an opt-out is not needed. Reason and benefit Fewer settings, no silent loss of shortcuts on upgrade, and removal of a database column, two API routes, a query hook, and a React context that existed only to gate this feature. Breaking changes `GET` and `PATCH /api/auth/preferences` are removed. `PATCH /api/instance/settings/general` no longer accepts `keyboardShortcuts`; that schema is strict, so the key now returns 400. `instance.general.keyboardShortcuts` is no longer a valid `PAPERCLIP_HIDDEN_SETTINGS` key; the parser ignores unknown keys with a warning. ## What Changed - Removed the Keyboard shortcuts section from Profile settings, the `useUserPreferences` hook, `queryKeys.auth.preferences`, and `authApi.getPreferences` / `authApi.updatePreferences`. - Removed `GeneralSettingsContext`. The inbox, legacy inbox, task list, legacy task list, cases, and task detail pages no longer gate their key handlers. - Removed the `enabled` option from `useKeyboardShortcuts`. The app shell always registers the global shortcuts. - Removed `GET` and `PATCH /api/auth/preferences`, their OpenAPI entries, and the `currentUserPreferencesSchema` / `updateCurrentUserPreferencesSchema` validators. - Removed `keyboardShortcuts` from `InstanceGeneralSettings`, the general settings zod schema, the settings service defaults, and `HIDEABLE_GENERAL_SECTIONS`. - Added migration `0289_drop_user_keyboard_shortcuts`, which drops `user.keyboard_shortcuts`. - Updated `AGENTS.md`, `doc/SPEC.md`, `doc/SPEC-implementation.md`, and `docs/deploy/environment-variables.md`. - Parsed the stored general settings row with `instanceGeneralSettingsSchema.strip()` in the feedback vote path, so a retired key left in the row cannot reset the sharing preference to `prompt` and overwrite the stored choice. - Kept every bare global shortcut (`c`, `?`, `[`, `]`, `/`) out of open modal dialogs in `useKeyboardShortcuts`; only `/` had that guard before. - Updated the affected tests and added a Profile settings test that asserts the toggle is gone, a hook test for the modal dialog guard, and a feedback service regression test for the retired-key case. ## Verification - Typecheck passes for `@paperclipai/shared`, `@paperclipai/db` (including the migration numbering and safety checks), `@paperclipai/server`, and `ui`. - `pnpm exec vitest run server/src/__tests__/instance-settings-routes.test.ts server/src/__tests__/openapi-routes.test.ts server/src/__tests__/auth-routes.test.ts server/src/__tests__/sentry.test.ts` → 119 passed. - `pnpm exec vitest run ui/src/components/Layout.test.tsx ui/src/pages/ProfileSettings.test.tsx ui/src/pages/IssueDetail.test.tsx ui/src/pages/Inbox.test.tsx ui/src/pages/Cases.test.tsx ui/src/hooks/useKeyboardShortcuts.test.tsx ui/src/pages/Agents.test.tsx ui/src/pages/InstanceGeneralSettings.test.tsx` → 286 passed. - `pnpm exec vitest run packages/shared/src/settings-visibility.test.ts` → 16 passed. - `pnpm exec vitest run ui/src/hooks/useKeyboardShortcuts.test.tsx` → 7 passed. - `pnpm exec vitest run server/src/__tests__/feedback-service.test.ts` (embedded Postgres) → the new retired-key test passes with the fix and fails without it. - Manual: sign in with no settings changed, open the inbox, press `j` and `k` to move the selection, press `?` to open the cheatsheet. Open Settings → Profile and confirm there is no Keyboard shortcuts section. ## Risks - The migration drops a column. It uses `DROP COLUMN IF EXISTS`, and the column has no readers after this change. If you roll back to a build from before this PR after the migration has run, re-add the column first: `ALTER TABLE "user" ADD COLUMN "keyboard_shortcuts" boolean DEFAULT false NOT NULL;`. The older build's ORM selects that column when it loads users. - Any external client that still sends `keyboardShortcuts` to `PATCH /api/instance/settings/general` receives a 400. No in-repo client does. - Stored `instance_settings.general.keyboardShortcuts` values are stripped on read and ignored. - Users who never turned the toggle on now get shortcuts. The handlers skip text inputs, contenteditable regions, and modal dialogs, so typing is unaffected. ## Model Used Claude Fable 5.1 (`claude-fable-5-1`) in Claude Code, with extended thinking and tool use. ## Checklist - [x] I have included a thinking path that traces from project context to this change - [x] I have specified the model used (with version and capability details) - [x] I have checked ROADMAP.md and confirmed this PR does not duplicate planned core work - [x] I have searched GitHub for duplicate or related PRs and linked them above - [x] I have either (a) linked existing issues with `Fixes: #` / `Closes #` / `Refs #` OR (b) described the issue in-PR following the relevant issue template - [x] I have not referenced internal/instance-local Paperclip issues or links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip` URLs) - [x] My branch name describes the change (e.g. `docs/...`, `fix/...`) and contains no internal Paperclip ticket id or instance-derived details - [x] I have run tests locally and they pass - [x] I have added or updated tests where applicable - [x] I have updated relevant documentation to reflect my changes - [x] I have considered and documented any risks above - [x] All Paperclip CI gates are green - [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups - [x] I will address all Greptile and reviewer comments before requesting merge	2026-09-29 21:28:06 -07:00
Devin FoleyandPaperclip	35a4448c02	fix(cursor): select failure diagnostics after trace notices (#14636 ) ## Thinking Path > - Paperclip manages work performed by AI agents. > - The Cursor CLI adapter turns process output into run results. > - Cursor can print a trace-file notice before a real error. > - The adapter used the first stderr line as the failure summary. > - This could hide the error behind an informational file path. > - This change selects the first diagnostic after that known notice and preserves the full logs. ## Linked Issues or Issue Description What happened? When Cursor exits with a nonzero code, a leading `cursor-retrieval: tracing to ...` notice can become the error summary. A later error remains in stderr but is absent from the summary. If the notice is the only output, the summary does not explain that the process exited unsuccessfully. Expected behavior Prefer the structured error, then a stderr diagnostic, then the exit code. Keep the run failed and preserve the original logs. Steps to reproduce 1. Use a fixture Cursor executable that writes the trace-file notice to stderr. 2. Write `Authentication failed` on the next line, then exit with code 7. 3. The old adapter reports the trace-file notice. This change reports the authentication error. 4. Repeat with only the notice. This change reports `Cursor exited with code 7`. Paperclip version or commit Reproduced against master commit `17780751551b3bc1c2521f7694026c34534c46c9` with local process fixtures. Deployment mode Local CLI adapter. The diagnostic helper is also used by environment probes. Searched open Cursor PRs and issues. PRs #14631 and #14435 concern native ACP support; #11106 concerns MCP configuration. None changes this legacy CLI diagnostic selection. ## What Changed - Skip only the exact trace-location notice when choosing a diagnostic line. - Remove terminal control codes from summary candidates. - Use the same selection for execution and environment probes. - Preserve structured-error priority, exit status, retry decisions, and raw stdout/stderr. - Add child-process regression tests and narrow parsing cases. Document the behavior. ## Verification - Two execution regression cases failed on the previous implementation; structured-error priority already passed. - `pnpm exec vitest run packages/adapters/cursor-local`: all 16 tests passed across five files. - `pnpm --filter @paperclipai/adapter-cursor-local typecheck` passed. - `pnpm -r typecheck` passed. - All GitHub CI checks passed on the PR head. One preview-runtime readiness test failed on the first attempt; its full local suite passed (28 tests, three skips) and the failed CI shard passed on retry. No unrelated source change was needed. - The broad local `pnpm test:run` command did not complete in the available verification window and was stopped; no full local-suite pass is claimed. The full sharded GitHub CI suite passed. `pnpm build` passed. - Tests use local fixture processes. They make no Cursor provider requests. ## Risks A future Cursor notice format may no longer match and will remain visible. Retrieval error lines and unknown diagnostics remain visible. This improves diagnosis; it does not claim to fix an unknown provider or machine failure. There are no schema, authentication, cancellation, or retry-policy changes. ## Model Used OpenAI Codex (GPT-6), with reasoning, repository inspection, and command execution. The session does not expose a more specific model revision or context-window size. ## Checklist - [x] I have included a thinking path that traces from project context to this change - [x] I have specified the model used (with version and capability details) - [x] I have checked ROADMAP.md and confirmed this PR does not duplicate planned core work - [x] I have searched GitHub for duplicate or related PRs and linked them above - [x] I have described the issue in-PR following the relevant issue template - [x] I have not referenced internal/instance-local Paperclip issues or links - [x] My branch name describes the change and contains no internal Paperclip ticket id or instance-derived details - [x] I have run the targeted tests locally and they pass; full checks are in progress - [x] I have added or updated tests where applicable - [x] I have updated relevant documentation to reflect my changes - [x] I have considered and documented any risks above - [x] All Paperclip CI gates are green - [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups - [x] I will address all Greptile and reviewer comments before requesting merge Co-authored-by: Paperclip <noreply@paperclip.ing>	2026-09-29 16:36:36 -07:00
DottaandPaperclip	2de43fc909	fix(issues): keep agent mentions as context and defer personal app authorization (#14577 ) ## Thinking Path > - Paperclip is the open source app people use to manage AI agents for work. > - Each task has one assignee. Explicit assignment and review requests select who should act. > - An agent mention started another agent on a task it did not own. Native attachment staging then rejected that run. > - Allowing that run through startup could also let two agents work on the same task. > - Mentions should identify relevant context. They should not start work or forward comments to other tasks. > - A personal app installed on a shared agent must also wait until tool use to resolve the current user's grant. > - This pull request removes mention dispatch and keeps missing personal app credentials from blocking startup. ## Linked Issues or Issue Description What happened? A native agent mentioned on another agent's task failed with `paperclip_runner_attachment_staging_not_authorized`. The source task could already be complete. A nearby optional-app warning was a separate problem: personal app tools were excluded when their shared health state required attention. Expected behavior An agent mention is context only. It does not wake the agent, take ownership, or copy a comment onto another task. Normal feedback still reaches the assignee. Assignment and explicit review requests still dispatch work. An unavailable personal app does not block startup or produce a startup warning. Tool use requests the current user's authorization and never uses another user's grant. Steps to reproduce 1. Assign a task to agent A. Post a comment that mentions agent B, including a comment that closes A's task or references B's child task. 2. Confirm the comment retains its agent link and B receives no run or deferred wake. A can still receive normal feedback. 3. Install an active personal MCP connection on B. Give only Alice a grant and leave shared health at `error`. 4. Explicitly assign work to B for another user. Confirm it can finish without using the app. 5. Ask B to use the app. Confirm its tool call shows an inline connection request for the current user. Related work: Refs #11144. This change uses the existing execution-time personal grant resolution. ## What Changed - Remove mention dispatch from standalone comments and issue updates. Remove implicit forwarding of parent comments to a mentioned worker's child task. - Ignore new requests with the legacy mention wake reason before creating a run or deferred request. Preserve already accepted queue entries, which can combine assignments and feedback with a later mention. - Remove the native mention admission, staging, and finalization exceptions from this PR. Native task ownership checks remain intact. - Keep active, installed personal app tools available despite shared health errors. Remove optional-app startup warnings. Tool execution retains the current user's grant and policy checks. - Update agent instructions and product/API docs. Refresh generated capability source anchors. ## Verification - Red: comment-route regressions reproduced extra agent wakes and child comment forwarding. A separate regression proved that cancelling by the last coalesced reason could drop an accepted assignment. - Green: the targeted route, wake queue, heartbeat, workspace, responsible-user, MCP discovery, and HTTP gateway suites passed. The final queue and heartbeat rerun passed 104 tests, the restored queue adapter passed 56, and both comment-route suites passed 135. These include accepted assignment preservation, rejection of new mention requests, and normal assignee feedback. - `pnpm -r typecheck` and `pnpm build` passed locally. The full local `pnpm test:run` attempt was interrupted for review/CI fixes, so it is not claimed as a completed local pass. It exposed a cleanup timing race in the concurrent-mention assertion, now fixed and verified across 10 repetitions. CI also exposed an obsolete test waiting for the removed mention lookup; it was reproduced and fixed, then both comment suites passed. Final full-suite verification is through CI. - Final head `bd9ea4cb05a8f081c54e017760a8999f9ea6ef44`: 54 checks passed, 2 Storybook checks intentionally skipped; no pending or failing checks. Full CI includes general and serialized suites, all 8 browser shards, runner verification, typecheck, build, and canary dry run. Greptile is 5/5 on this exact commit, with no unresolved findings. - One unchanged Cursor adapter test hit its 10-second CI timeout. All 5 tests in that file passed locally; one retry of its CI shard passed all 674 tests (3 skipped). The aggregate verification gate then passed. No code or timeout was changed for that retry. - Live browser check: inserted a structured mention with the picker on a human-owned task. The saved link remained visible. Database checks found zero new runs and zero wake requests. - Live Codex runner check: explicitly assigned that task with the unavailable personal app attached. The run succeeded and committed completion without using the app or creating a connection card. - Live browser follow-up: asked the assignee to call PostHog and mentioned another enabled agent as context. Only the assignee ran. It succeeded and displayed the existing inline connection card. Only Alice's grant existed; the run belonged to a different user. - The HTTP regression covers tool discovery with no provider calls or connection cards, first use returning the current user's authorization request, and successful retry after that user's grant exists. - App checks use an isolated local fixture and a fake MCP provider. They do not use production app credentials. ## Risks - Intentional behavior change: workflows that used mentions to wake agents must use assignment, a bounded child task, or an explicit review request. - Already accepted queue entries retain their prior rules. An old entry can combine assignment or feedback with a later mention; its last reason cannot safely identify mention-only work. New mention requests create no run or deferred wake. - Personal apps with a shared health error remain discoverable. Actual tool use still requires the responsible user's grant and existing policy gates. - No database migration or public API schema change. ## Model Used - OpenAI GPT-6 through Codex, with reasoning, repository tools, code execution, and browser testing. The exact serving model ID and context-window size are not exposed in this session. - Live native-run verification used `gpt-6-astra` through the Codex provider. ## Checklist - [x] I have included a thinking path that traces from project context to this change - [x] I have specified the model used (with version and capability details) - [x] I have checked ROADMAP.md and confirmed this PR does not duplicate planned core work - [x] I have searched GitHub for duplicate or related PRs and linked them above - [x] I have either (a) linked existing issues with `Fixes: #` / `Closes #` / `Refs #` OR (b) described the issue in-PR following the relevant issue template - [x] I have not referenced internal/instance-local Paperclip issues or links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip` URLs) - [x] My branch name describes the change (e.g. `docs/...`, `fix/...`) and contains no internal Paperclip ticket id or instance-derived details - [x] I have run tests locally and they pass - [x] I have added or updated tests where applicable - [x] I have updated relevant documentation to reflect my changes - [x] I have considered and documented any risks above - [x] All Paperclip CI gates are green - [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups - [x] I will address all Greptile and reviewer comments before requesting merge --------- Co-authored-by: Paperclip <noreply@paperclip.ing>	2026-09-29 12:49:01 -05:00
DottaandPaperclip	83076d7e7c	feat: return completed handoffs to Agent Chat (#14408 ) Return completed Agent Chat handoffs through a durable outbox and scope each generated update to its supplied tasks. Add recovery, browser delivery, result access, and calibrated quality coverage. Validated with two consecutive ten-case Claude/Codex campaigns, all CI checks, and a 5/5 review. Co-Authored-By: Paperclip <noreply@paperclip.ing>	2026-09-29 10:25:52 -05:00
DottaandPaperclip	3b4b270650	fix(adapters): preserve ACP terminal failure diagnostics (#14573 ) ## Thinking Path > - Paperclip is the open source app people use to manage AI agents for work. > - The shared ACP adapter engine records agent failures for operators. > - ACP providers can report a failure category, title, and detailed cause. > - Our patch kept only the category in the saved error, so an operator could not diagnose a failure when tracing was off. > - This pull request preserves redacted provider diagnostics in the run error, transcript, and structured run result. > - Operators can now inspect the provider message and any supplied request ID or stack trace after the run ends. ## Linked Issues or Issue Description Refs #13889 (the diagnostic gap; this PR does not update the bundled Claude version). Refs #14484 (related model-refusal classification; this PR retains diagnostics for all terminal failure categories). What happened? An ACP turn failed with only `ACP agent reported a terminal service failure.` The provider's title and details were available in memory but absent from the saved error and transcript. Expected behavior The run retains useful provider diagnostics even when raw tracing is disabled. Credentials remain redacted. A size limit must report truncation instead of silently removing the cause. Steps to reproduce 1. Run an ACP agent that returns an error-severity typed session failure. 2. Include an HTTP error, request ID, and stack text in its title and details. 3. Inspect the failed run with tracing disabled. Before this change, only the category survives. ## What Changed - Both pinned ACPX patches pass complete error text to the in-memory callback, so redaction happens before truncation. - The shared engine retains the sanitized category, title, and details in `resultJson.terminalSessionFailure` and includes the text in the run error and error transcript. - Diagnostics redact configured environment values even under arbitrary names, unknown launch-environment values, connection URL passwords, run credentials, and common credential syntax. Known boolean settings remain readable, while credential values are redacted even when embedded in other text. Diagnostics remove control characters and invalid Unicode. - Title and detail limits keep escaped transcript JSON below the server's chunk limit. Truncated fields include an omission count. The safe run-result projection preserves a byte-bounded diagnostic preview when the result exceeds its byte budget, with an explicit pointer to the full adapter-bounded run error and transcript. - The existing UI and CLI display the error. Diagnostics do not become assistant output. Issue continuation summaries and session-compaction prompts receive only the generic category, preventing provider text from becoming handoff instructions. Existing quota classification, warnings, timeout precedence, and control-channel failure precedence remain in place. - Regression tests cover real ACP child processes with both pinned versions in one-shot and persistent modes, credential redaction, request IDs after the old 4 KiB cutoff, transcript parsing, storage bounds, and database retrieval of oversized multibyte diagnostics. ## Verification - Full CI on `20ad4f5f1f66c46d2c260e6ad0339cbea607b4cf`: 54 passed, 2 intentionally skipped, no pending or failing checks. Includes typechecking, build, all Vitest shards, Runner checks, browser E2E, and the canary packaging/public-install dry run. - Greptile: 5/5 on this commit. Superagent security scan passes. All review threads are resolved. - Local verification passed: shared ACP engine suite (395 tests); real Claude ACP child-process and diagnostic regressions across both pinned runtimes and both execution modes; run retrieval and model-handoff regressions (59 tests); ACPX patch packaging (16 tests); full typecheck and build. Affected package typechecks and focused tests were rerun after review fixes. - The broad local `pnpm test:run` was stopped after review edits made its cached imports stale. Fresh targeted runs pass, including both affected server suites. Cold-build import failures were also rerun after dependency builds: chat integration (1,063 tests) and tool access (351 tests) pass. The final commit's complete CI matrix is green. ## Risks - Provider diagnostic text is untrusted. This change retains more of it in company-scoped run records. Redaction and size bounds apply before persistence. - Diagnostics are limited to fields the provider supplies. Old runs cannot recover discarded error text. - No schema migration, recovery-policy change, or new Telemetry or OpenTelemetry export. ## Model Used - OpenAI GPT-6 through Codex, with reasoning, repository inspection, code editing, and test execution. The exact serving model ID and context-window size are not exposed in this session. ## Checklist - [x] I have included a thinking path that traces from project context to this change - [x] I have specified the model used (with version and capability details) - [x] I have checked ROADMAP.md and confirmed this PR does not duplicate planned core work - [x] I have searched GitHub for duplicate or related PRs and linked them above - [x] I have either (a) linked existing issues with `Fixes: #` / `Closes #` / `Refs #` OR (b) described the issue in-PR following the relevant issue template - [x] I have not referenced internal/instance-local Paperclip issues or links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip` URLs) - [x] My branch name describes the change (e.g. `docs/...`, `fix/...`) and contains no internal Paperclip ticket id or instance-derived details - [x] I have run tests locally and they pass - [x] I have added or updated tests where applicable - [x] I have updated relevant documentation to reflect my changes - [x] I have considered and documented any risks above - [x] All Paperclip CI gates are green - [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups - [x] I will address all Greptile and reviewer comments before requesting merge --------- Co-authored-by: Paperclip <noreply@paperclip.ing>	2026-09-29 10:18:30 -05:00
Dotta Paperclip OpenAI GPT-6 Astra	da887ea3e9	fix(runner): honor Codex effort selected in composer (#14568 ) ## Thinking Path > - Paperclip manages AI agents that work on assigned tasks. > - The task composer lets a person choose an assignee, model, and effort for the next run. > - A Paperclip Runner agent can use Codex as its provider. > - The composer hid Codex effort for that agent because it checked only the older Codex adapter. > - The native Runner input also did not carry an effort choice to Codex. > - This pull request carries the chosen effort from the composer to each Codex turn. > - People can now select a supported effort and get the effort they selected. ## Linked Issues or Issue Description Refs #14322 What happened? The composer showed a model but no effort slider when the assignee used Paperclip Runner with the Codex provider. A task-level model override also did not reach the native Runner input. Expected behavior The composer shows effort choices for a known Codex model. The next native Codex turn uses the selected model and effort. Steps to reproduce 1. Open a task composer. 2. Select an agent that uses Paperclip Runner with the Codex provider. 3. Select a known Codex model such as `gpt-6-astra`. 4. Open the assignee and model picker. The effort slider is missing before this change. ## What Changed - Show known Codex effort levels for Paperclip Runner Codex assignees. - Save the task effort override in the native run input and send it to Codex on each turn. - Apply the task's merged model and effort overrides when the native run starts. - Apply a task model override for OpenCode Runner without changing the agent's provider. - Add Runner effort tests and desktop and mobile Storybook cases. ## Verification - `pnpm -r typecheck` passed. - `pnpm build` passed. - `pnpm build-storybook` passed. - `pnpm check:token-gates` passed. - Focused UI, server, Runner contract, and Codex driver tests passed. - The full CI test matrix, build, typecheck, and canary dry run passed on the latest head. ## Risks - Native Runner inputs add an optional Codex effort field to the current v5 input. Older inputs keep their previous behavior. - A known model rejects an effort that its catalog does not support. Unknown models do not show a slider. > This fixes an existing composer bug. I checked `ROADMAP.md`; it does not describe this bug as planned work. ## Model Used OpenAI Codex, GPT-6. The exact deployment ID and context window are not exposed in this session. The model used reasoning, code execution, and repository tools. ## Checklist - [x] I have included a thinking path that traces from project context to this change - [x] I have specified the model used (with version and capability details) - [x] I have checked ROADMAP.md and confirmed this PR does not duplicate planned core work - [x] I have searched GitHub for duplicate or related PRs and linked them above - [x] I have either (a) linked existing issues with `Fixes: #` / `Closes #` / `Refs #` OR (b) described the issue in-PR following the relevant issue template - [x] I have not referenced internal/instance-local Paperclip issues or links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip` URLs) - [x] My branch name describes the change (e.g. `docs/...`, `fix/...`) and contains no internal Paperclip ticket id or instance-derived details - [x] I have run tests locally and they pass - [x] I have added or updated tests where applicable - [x] I have updated relevant documentation to reflect my changes - [x] I have considered and documented any risks above - [x] All Paperclip CI gates are green - [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups - [x] I will address all Greptile and reviewer comments before requesting merge --------- Co-authored-by: Paperclip <noreply@paperclip.ing> Co-authored-by: OpenAI GPT-6 Astra <noreply@openai.com>	2026-09-29 09:41:05 -05:00
DottaandPaperclip	7636966452	fix(inbox): keep other users’ failed runs out of Mine (#14572 ) ## Thinking Path > - Paperclip is the open source app people use to manage AI agents for work. > - The Mine inbox shows work that needs the current user. > - Failed-run rows used the latest run for every agent in the company. > - A failure from another user therefore appeared in Mine and its badge. > - Run list responses also omitted the responsible user needed to filter these rows. > - This pull request uses run ownership for personal failure routing. > - Users see their own failures and can still inspect company failures in All. ## Linked Issues or Issue Description What happened? An agent run started for one user failed. Its row and failure badge appeared in another user's Mine inbox. Expected behavior Mine and its badge include failed runs for the current responsible user. Other users' failures remain available in All and run details. Steps to reproduce 1. Use a company with two human users. 2. Create a failed or timed-out run attributed to the first user. 3. Open Mine as the second user. Before this fix, the failed run appears there and increases the badge. Paperclip version or commit Reproduced in regression tests on master at `24beb0057`. Deployment mode Authenticated deployment with multiple users. Tests also cover the local single-user board. Related prior work: #933 addressed inbox dismissal and badge consistency. No duplicate ownership fix was found. ## What Changed - Return `responsibleUserId` in normal and summary run lists. - Share one ownership rule across both inbox versions and client/server badges. - Select the latest run per agent before applying the ownership filter. This prevents old failures from resurfacing on shared agents. - Keep unattributed historical failures in the local board's Mine view. Hide them from authenticated users with no matching owner. - Keep company health alerts outside the personal badge, consistent with the client. - Document the routing contract and add page, badge, and database regression coverage. ## Verification - Red: the new badge cases failed with three company failures instead of one personal failure; eight Mine page cases failed across both inbox versions. - Green: 113 focused tests pass in `ui/src/lib/inbox.test.ts`, `ui/src/pages/Inbox.test.tsx`, `server/src/__tests__/heartbeat-list.test.ts`, and `server/src/__tests__/inbox-dismissals.test.ts`. - `pnpm check:token-gates` passes. - Agent calls on behalf of a user have two additional red-to-green API regressions. - Full `pnpm -r typecheck` and `pnpm build` pass. Server typecheck also passes after the agent-call fix. - All CI test shards and browser tests pass on `243bfa681`. The duplicate local `pnpm test:run` was stopped after the CI test lanes completed; it did not finish locally. ## Risks - Authenticated users no longer receive unattributed legacy failures in Mine. Those failures remain visible in All. - The server badge no longer counts company health alerts, matching the existing client badge. - No migration, run state, retry behavior, or company access rules change. ## Model Used - OpenAI GPT-6 through Codex, with reasoning, terminal execution, and browser tools. The exact deployment variant and context window size are not exposed in this session. ## Checklist - [x] I have included a thinking path that traces from project context to this change - [x] I have specified the model used (with version and capability details) - [x] I have checked ROADMAP.md and confirmed this PR does not duplicate planned core work - [x] I have searched GitHub for duplicate or related PRs and linked them above - [x] I have either (a) linked existing issues with `Fixes: #` / `Closes #` / `Refs #` OR (b) described the issue in-PR following the relevant issue template - [x] I have not referenced internal/instance-local Paperclip issues or links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip` URLs) - [x] My branch name describes the change (e.g. `docs/...`, `fix/...`) and contains no internal Paperclip ticket id or instance-derived details - [x] I have run tests locally and they pass - [x] I have added or updated tests where applicable - [x] I have updated relevant documentation to reflect my changes - [x] I have considered and documented any risks above - [x] All Paperclip CI gates are green - [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups - [x] I will address all Greptile and reviewer comments before requesting merge --------- Co-authored-by: Paperclip <noreply@paperclip.ing>	2026-09-29 09:40:21 -05:00
DottaandPaperclip	24beb00575	feat(runner): add rich ACP transport and durable interaction foundation (#14430 ) Add shared rich ACP transport, durable questions and permissions, verified provider packaging, and bounded activity and plan presentation. Keep Cursor, Copilot, and Pi pending their separate provider qualification. Persist interaction settlement before publication, fence failed writes until fresh recovery, and preserve owned-process cleanup. Incorporate reviewed mainline integration with extended harness coverage. Co-Authored-By: Paperclip <noreply@paperclip.ing>	2026-09-29 08:56:21 -05:00
DottaandFry	3ca196b0a6	feat(agents): persist agent files across tasks without revision history (#14420 ) ## Thinking Path > - Paperclip is the open source app people use to manage AI agents for work. > - An agent needs personal files across tasks and sessions. > - AGENTS.md is one file in that directory. Supporting files need the same persistence. > - The Instructions Editor and agent runs must share one current directory. > - Concurrent runs should apply only the files they change. The last sync of the same file wins. > - This pull request uses existing file transport and removes temporary copies after sync. > - Old instruction-only sessions keep their restore contract. New saves do not create revision history. ## Linked Issues or Issue Description Refs #14325. This replaces its revision-oriented design with persistent agent files. Keep #14325 unmerged. Transport prerequisite #14416 merged first at `d172197117a14b80a1eb2d2835a0e7cce2679656`. This PR now targets master and remains below 100 changed files. Related work: #4513 and #8798 cover instruction tooling. This change handles run synchronization, cross-task personal files, browser editing, and old-session restoration. ## What Changed - Keep one current directory per company and agent. Point AGENT_HOME at a temporary working copy for each active run. Keep task files and provider HOME separate. - Restore text, binary files, and nested folders through workspace transport. Exclude remote agent files from task Git snapshots with a self-ignoring file inside the reserved runtime directory; never write through repository-controlled Git metadata. - Collect after the provider and child processes have stopped. Keep resumable conversation state. - Apply changed and deleted files under the agent lock. The last sync wins for the same file. Unrelated concurrent changes survive. - Remove temporary copies after successful sync, rejected sync, and staging failure. Register ownership before copying so restart recovery can remove interrupted preparation. Retry transient synchronization up to three times. Preserve the original remote lease reference until deletion succeeds; restart cleanup never acquires a replacement sandbox. Do not create captured directories or a conflict-review queue for new runs. - Keep browser editing, stale-draft protection, and streaming binary downloads. Keep the instruction entry and text editor limited to 1 MiB. - Keep historical agent-folder sync failures on their affected runs instead of repeating them above current saved instructions. Preserve legacy candidate review and current browser-save errors. Avoid duplicate quota warnings while retaining separate sync failures when they describe a different problem. - Require target-scoped caller grants for peer instruction access, while preserving self edits, responsible-user checks, and protected-change consent. - Treat full storage as a nonblocking run warning, never an agent pause or run-admission failure. Restore already-over-quota saved folders so ordinary agent cleanup can recover; warn on each run until cleanup. The run detail view shows the warning. - Allow 256 MiB per file, 2 GiB per directory, and 100,000 entries. Hash large files as streams. Check editor-save quotas with metadata instead of hashing unrelated files. - Preserve old native inputs, instruction-only copies, paths, digests, and pending legacy candidates. Adopt old revision heads once. New writes do not append history rows. - Add idempotent migration 0287 and verify upgrades from the preview tables and receipts. - Add nine interactive stories under Agents / Persistent files, including automatic incoming edits, stale browser drafts, and storage-limit diagnostics. ## Verification - Merge candidate: `4f5390107ec6ffd80a76d1d2e85530e66f21d079`, after merging current master and the landed transport prerequisite. Integration required no manual conflict resolution; the feature remains 99 changed files. Full workspace typecheck, production build, token gates, and 715 focused tests passed on this merge candidate. Fresh Greptile review is 5/5 with no unresolved findings. All 55 checks passed, with four conditional skips, including the build, typecheck, browser E2E, and canary dry run. A single retry recovered four jobs interrupted by runner shutdowns; no source changes were required. - Historical-warning UI fix: all 6,834 UI tests across 640 files passed, including regression coverage for three old failures, legacy preserved edits, and warnings scoped to the affected run. Full workspace typecheck, production build, Storybook build, and token gates passed. Browser-verified Storybook playtests passed for Historical Failures After Successful Save, Storage Limit, and Full Storage Run Warning. - Review follow-ups at `4e20c9fb2`: all 18 focused tests passed, including external Git directories, linked worktrees, symlinks, hardlinks, and distinct I/O failures alongside storage warnings. Server and UI typechecks, token gates, and the production build passed. - Storage warning regressions at `0724f3012`: all 33 directory tests and all five heartbeat-list tests passed, with no skips in their successful runs. They cover repeated runs while full, an already-over-quota saved folder, cleanup, warnings retained after unrelated save failures, and bounded warnings in large result JSON. Server typecheck passed after the final warning fixes. - Full workspace typecheck, production build, and token gates passed during this follow-up. Product E2E harness: 631 tests passed across 52 files; harness typecheck passed. Earlier native session/context and directory/legacy collection suites passed 537 tests; Runner unit/transport suites passed 329 tests. - Real E2E at `0724f3012` (before this follow-up): legacy local Codex and native Daytona Codex each passed six tasks, one server restart, seven independent assertions, and cleanup verification. Both prove browser-to-agent edits, agent-to-browser edits, nested/binary restoration, per-file last-sync-wins, a successful run after an oversized save rejection, and cleanup clearing the warning. - Native local Codex also passed the six-task quota flow before the final warning-retention fixes. That pass began at `918d1ed02` while the bounded-result warning fix was being edited, so it is not claimed as exact-final-head evidence. Its final-head rerun failed during embedded PostgreSQL bootstrap before any provider run: the macOS host had 87,365 of 87,381 SysV semaphores occupied. No unrelated services or kernel limits were changed. - The final-source report intentionally records 2/3 cells passed, preserving the blocked native-local attempt: `tests/runner-e2e/results/agent-files-quota-final-20260928-report/`. Earlier failed attempts and provenance notes remain under `tests/runner-e2e/results/agent-files-quota-final-20260928-input/` and the original campaign directories. - Daytona used immutable image `ghcr.io/paperclipai/paperclip-daytona-runner@sha256:5643f0d801417cae3581833a1a3bc6715b325e028602738d2652c44cac5dc6bf` and its exact Linux runner binary. Controller source is `0724f3012`; image source is recorded separately. - Legacy-session compatibility and all three ACP Stop/resume browser regressions passed on the prior validated feature head `169fab46d5af21caa2269b4c1b29b69c933a6951`. They assert the same provider session is retained and interrupted writes are not replayed. Migration upgrade tests also passed earlier. - Nine interactive stories are under Agents / Persistent files, including Full Storage Run Warning. Its playtest and visual browser inspection passed; the warning states that runs continue and the editor remains available. - Prior-head checks on `4e20c9fb2`: 55 passed, two conditional jobs skipped, no failures or pending checks. All eight browser E2E shards and their aggregate passed. Fresh Greptile review is 5/5 with no findings; all review threads are resolved, the security scan passed, and GitHub reports no merge conflicts. - The broad local follow-up test run was interrupted after host semaphore exhaustion affected isolated PostgreSQL instances. It also encountered the existing macOS long-path fixture failure and two timeout failures. This is not a claim that the full local suite passed. Logs are retained; focused storage/warning tests passed. ## Risks - A later sync can overwrite an earlier edit to the same file, including a saved browser edit. There is no text merge or retained version. This is the intended last-sync-wins policy. - A save that exceeds a storage limit is rejected and its temporary copy is discarded. The run itself continues normally, and later runs restore the last saved files with a warning until cleanup. Transient sync failures get bounded retries. An I/O failure partway through a sync can leave some files updated; a failed receipt does not claim whole-folder success. - Larger folders increase copy time, network traffic, and temporary disk usage. Active runs still need working copies. Terminal runs do not accumulate archives. Operators must provision disk for agents and configured concurrency; these limits are not company-wide quotas. - A restored old native session remains instruction-only until a fresh session starts. Its original conflict fence and existing pending candidates remain compatible. - Provider processes close at the collection boundary. Conversation resume remains available, but warm process reuse is lost. - Backups must include the instance filesystem and database. External bundles keep their existing behavior until explicitly moved to managed storage. ## Model Used OpenAI Codex, GPT-6 family. The session does not expose a more specific model ID or context-window size. Reasoning, code execution, and browser tools assisted this change. Real provider E2E uses `gpt-5.6-sol`. ## Checklist - [x] I have included a thinking path that traces from project context to this change - [x] I have specified the model used (with version and capability details) - [x] I have checked ROADMAP.md and confirmed this PR does not duplicate planned core work - [x] I have searched GitHub for duplicate or related PRs and linked them above - [x] I have either (a) linked existing issues with `Fixes: #` / `Closes #` / `Refs #` OR (b) described the issue in-PR following the relevant issue template - [x] I have not referenced internal/instance-local Paperclip issues or links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip` URLs) - [x] My branch name describes the change (e.g. `docs/...`, `fix/...`) and contains no internal Paperclip ticket id or instance-derived details - [x] I have run tests locally and they pass - [x] I have added or updated tests where applicable - [x] I have updated relevant documentation to reflect my changes - [x] I have considered and documented any risks above - [x] All Paperclip CI gates are green - [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups - [x] I will address all Greptile and reviewer comments before requesting merge --------- Co-authored-by: Fry (Paperclip) <noreply@paperclip.ing>	2026-09-29 08:25:56 -05:00
DottaandPaperclip	d172197117	feat(storage): add plain directory sync with conflict preflight (#14416 ) ## Thinking Path > - Paperclip is the open source app people use to manage AI agents for work. > - Agent runs use workspace transport to restore and collect files. > - Some directories belong to the agent across tasks. > - Those directories need plain file transport without task Git state. > - A concurrent file edit must be detected before a merge changes any file. > - This pull request adds optional plain-directory sync and conflict preflight. > - Existing task workspace sync keeps its defaults. ## Linked Issues or Issue Description Refs #14325. This is the transport prerequisite for a replacement of its instruction revision design with current agent files. ## What Changed - Add an opt-in plain-directory transport mode to command and sandbox runtimes. - Add strict merge preflight for file edits, deletions, and directory changes. - Accept identical replay after an interrupted merge. Preserve competing changes. - Set the compiled OpenCode test executable to 0755, independent of the CI host’s file-creation mask. Preserve the original startup error if cleanup also fails. ## Verification - At `ced53ae532ce6966cad5a83575d83db61af98126`, all 212 targeted transport tests passed across workspace restore, remote managed runtime, SSH fixture, and execution-target sandbox suites. Adapter-utils typecheck passed. - Real isolated SSH retry fixture previously passed with `PAPERCLIP_ENABLE_DARWIN_SSH_ENV_LAB=1`; stale deleted files remain absent while gitignored binary bytes survive. - Dependent PR #14420 passed real native local, legacy local, and native Daytona persistence E2E at `169fab46d5af21caa2269b4c1b29b69c933a6951`, which includes all production transport changes through `ced53ae53`; the subsequent two commits only fix the OpenCode test fixture. Nine tasks, three server restarts, and all cleanup checks passed. - A hosted OpenCode fixture failed twice at `ced53ae53`. Reproduced the failure locally and in Linux with `umask 0002`: the compiler created a group-writable executable, correctly rejected by the qualified launch boundary. Explicit 0755 permissions fix the test without weakening the production guard. The focused test and non-root Linux reproduction now pass under that same mask. - Before rebase, head `69e97de0475d34aac5d532e559a405eaf015fd2b` includes the deterministic fixture permission fix and preserves original bootstrap diagnostics. All production transport code is unchanged since the 212-test validation. Fresh Greptile review is 5/5 on this exact head with no unresolved findings. All 54 current-head checks passed, with two conditional skips. The full CI run completed successfully, including the previously failing OpenCode runner shard. - Merge validation on rebased head `c509d79dd190c5cb00dc65edfde209097ff21465`: all five commits are patch-identical to the reviewed branch. All 54 checks passed with two conditional skips, and fresh Greptile review is 5/5 with no findings. One retry cleared an npm archive 404 and a Cursor fixture timeout. ## Risks - New behavior is opt-in. Existing task snapshot behavior retains its defaults. - Generic strict merge preflight remains opt-in. The dependent agent-folder feature rebases changed paths before applying them to provide per-file last-sync-wins; it does not create a conflict-review queue. - This change adds no database migration, dependency, or UI. ## Model Used OpenAI Codex, GPT-6 family. The session does not expose a more specific model ID or context-window size. Reasoning, code execution, and tool use assisted this change. Live provider validation used `gpt-5.6-sol`. ## Checklist - [x] I have included a thinking path that traces from project context to this change - [x] I have specified the model used (with version and capability details) - [x] I have checked ROADMAP.md and confirmed this PR does not duplicate planned core work - [x] I have searched GitHub for duplicate or related PRs and linked them above - [x] I have either (a) linked existing issues with `Fixes: #` / `Closes #` / `Refs #` OR (b) described the issue in-PR following the relevant issue template - [x] I have not referenced internal/instance-local Paperclip issues or links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip` URLs) - [x] My branch name describes the change (e.g. `docs/...`, `fix/...`) and contains no internal Paperclip ticket id or instance-derived details - [x] I have run tests locally and they pass - [x] I have added or updated tests where applicable - [x] I have updated relevant documentation to reflect my changes - [x] I have considered and documented any risks above - [x] All Paperclip CI gates are green - [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups - [x] I will address all Greptile and reviewer comments before requesting merge --------- Co-authored-by: Paperclip <noreply@paperclip.ing>	2026-09-29 07:59:11 -05:00
Devin FoleyandPaperclip	53aad90b9e	fix: retry sandbox ACP input delivery after gateway failures (#14485 ) ## Thinking Path > - Paperclip coordinates agent work through execution adapters. > - Sandbox ACP sessions send ordered input through a remote file queue. > - A temporary provider 502 currently closes the session during an input upload. > - A lost response can occur after the sandbox has consumed the message, so a blind retry can duplicate input. > - This pull request retries gateway failures with the same sequence and drops consumed sequences at the receiver. > - The session can continue through a brief provider failure without repeating a tool call. ## Linked Issues or Issue Description What happened? A sandbox ACP run can fail with `ACP agent disconnected during request (connection_close, exit=null, signal=null)` when a provider input upload returns HTTP 502. The bridge destroys its local socket on the first failure and can discard the diagnostic before the proxy reads it. Expected behavior A temporary gateway failure should get a bounded retry. A lost response after successful delivery must not duplicate input or reorder later messages. Permanent failures must still close the session. Steps to reproduce 1. Run the real sandbox process bridge with an echo child and a local test runner. 2. Inject a provider 502 before preparation, after a chunk upload, or after final publication and consumption. 3. Send the next input message. Before this change, the connection closes instead of delivering it. Searched open and closed PRs for `ACP disconnect`, `bridge retry`, and `502 sandbox`. Related work: #13287 covers shutdown after bridge loss; #13793 covers large launch envelopes. This change covers ordered input delivery within a running legacy ACP session. ## What Changed - Retry input uploads up to three times for recognized Daytona and Cloudflare HTTP 502, 503, and 504 diagnostics, with 250 ms and 500 ms delays. - Give each upload separate temporary paths and discard already-consumed input sequences, including late publication from an earlier attempt. Clean failed attempts in the background without removing a published message or another attempt’s files. Cleanup cannot delay retries or shutdown. - Keep later input behind the retry. Stop queued input on permanent failure and flush a fixed diagnostic before closing the socket. Neither failure-diagnostic persistence nor shutdown-warning persistence can block teardown. - Add real-process regression tests for lost responses, late publication, retry exhaustion, immediate permanent failure, and diagnostic redaction. - Give accepted run-log file appends up to three seconds to drain before finalization computes the size, hash, and durable copy. Close the run handle to later appends. This waits only for file writes, independently of later DB progress or live-event persistence. If writes remain stalled, return null size/hash metadata and skip the final durable copy so the run can settle. Late writes cannot restart mirroring. - Preserve legacy comment attribution when final log size is unknown by reading existing entries within the unchanged 2 MB scan limit. Storage errors or a three-second read deadline return the evidence already read instead of failing the comment listing; pagination stops at the deadline. The deadline requests cancellation of the underlying local stream or S3 HEAD, GET, and response stream. A separate response timeout returns partial evidence even when filesystem I/O delays cancellation; late reads cannot append evidence or start another page. Each listing retains its existing batches of eight reads, without a shared admission cap that skips readable logs under contention. - Document the retry and log-finalization boundaries in the development guide. ## Verification - Final commit `347daa564b`: [Linux CI](https://github.com/paperclipai/paperclip/actions/runs/36506995168/attempts/2) passed. Greptile Apex review 13 scored this commit 5/5 with no new findings; all 12 review threads are resolved. - The final CI run initially hit a Cursor test timeout and four Discord credential-lock contention failures. All five cases passed in isolation. The two failed shards and their aggregate gate passed on retry without a code change. Those intermittent failures are not claimed fixed by this PR. - `pnpm --filter @paperclipai/adapter-utils typecheck` passed. - `pnpm exec vitest run packages/adapter-utils/src/execution-target-stdin-race.test.ts packages/adapter-utils/src/execution-target-sandbox.test.ts packages/adapter-utils/src/sandbox-callback-bridge.test.ts`: 262 tests passed on the final implementation, including 21 new regressions. The original three fault-injection cases failed before the fix. - The regressions cover failed and indefinitely stalled cleanup, Cloudflare gateway responses and retry exhaustion, permanent errors that must not retry, and teardown while failure logging remains indefinitely stalled. Seven Apex regression cases failed before the review fixes. Adapter-utils typecheck and build passed again after the final review change. - `pnpm exec vitest run server/src/services/run-log-store.test.ts server/src/services/run-log-store-cancellation.test.ts`: all 25 tests passed, including four new regressions that failed before the finalization fix. They cover delayed and failed appends, late-write admission, agreement between the local bytes/summary/durable copy, and a stalled append that exhausts the three-second budget. The timeout case verifies unknown metadata, no final upload, and no mirror restart after late completion. New cancellation tests use the real AWS SDK against a local HTTP server. They verify that stalled HEAD, GET, and response-body connections close on abort and that a subsequent read succeeds. Local range and already-aborted read cases also pass. - `pnpm exec vitest run server/src/__tests__/issues-service.test.ts -t 'readIssueCommentRunLogText\|deriveIssueCommentRunLogAttribution'`: 14 targeted tests passed. The null-size reader case, both storage-error cases, the stalled-read case, and the cancellation/concurrent-listing cases failed before their fixes. The new regressions verify that timed-out reads are cancelled, subsequent listings recover, and two concurrent listings both retain their attribution markers. A read that ignores cancellation still returns partial evidence at three seconds and cannot resume pagination when it finishes; this regression failed before the response-timeout fix. - `pnpm --filter @paperclipai/server typecheck` and `pnpm --filter @paperclipai/server build` passed after the response-timeout change. - Full `pnpm -r typecheck` and `pnpm build` passed earlier in this PR; the affected packages were rechecked after review fixes. - Full local `pnpm test:run` failed in the general-server group: 511 files passed, 40 failed, and 158 were skipped. Failures include embedded PostgreSQL initialization, read-only cache directory renames, a macOS long-path fixture, and a workspace exposure assertion. The PostgreSQL, cache-permission, and long-path failures also reproduce with both changed implementation files restored to baseline commit `24c58e479a`. The exposure suite passes in isolation both on baseline and the fixed branch (28 passed, 3 skipped). CI runs the full suite on Linux. Later local test groups were not reached. - An earlier CI run hit the Telegram retry-timing failure fixed upstream in #14501. The branch includes that master fix. The selected recovery test passed against a fresh, migrated PostgreSQL 16 database. The embedded PostgreSQL runner is unavailable on this Mac; the isolated database was stopped and removed afterward. - No live agent turn was replayed. The tests use local child processes and injected provider failures. ## Risks Retries are restricted to recognized Daytona SDK and Cloudflare bridge gateway-error messages, which survive plugin RPC serialization. Other errors fail immediately. Temporary upload paths are now unique for all command-managed queue writes. Receiver sequence checks prevent duplicate input; retries do not restart an agent turn. Cleanup and failure logging are nonblocking and best effort; session teardown remains the final cleanup boundary. Log finalization now drains accepted local file writes for at most three seconds and ignores later appends on the closed run handle. A timeout leaves final size/hash unknown and skips the final durable upload; an existing partial mirror may remain available, but it is not claimed as a verified final snapshot. It does not wait for later DB progress or live-event persistence. Optional attribution keeps partial evidence when a read fails or times out. Cancellation closes S3 requests and response streams. Local filesystem I/O may finish after the caller deadline, but a late read cannot change the returned evidence or continue pagination. Later listings can retry after storage recovers. There is no schema, authentication, or permission change. Revert this commit to restore the previous behavior. ## Model Used OpenAI GPT-6 through Codex, with reasoning, repository inspection, code editing, and local test execution. ## Checklist - [x] I have included a thinking path that traces from project context to this change - [x] I have specified the model used (with version and capability details) - [x] I have checked ROADMAP.md and confirmed this PR does not duplicate planned core work - [x] I have searched GitHub for duplicate or related PRs and linked them above - [x] I have either (a) linked existing issues with `Fixes: #` / `Closes #` OR (b) described the issue in-PR following the relevant issue template - [x] I have not referenced internal/instance-local Paperclip issues or links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip` URLs) - [x] My branch name describes the change and contains no internal Paperclip ticket id or instance-derived details - [x] I have run tests locally; targeted tests pass and full-suite limitations are documented above - [x] I have added or updated tests where applicable - [x] I have updated relevant documentation to reflect my changes - [x] I have considered and documented any risks above - [x] All Paperclip CI gates are green - [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups - [x] I will address all Greptile and reviewer comments before requesting merge --------- Co-authored-by: Paperclip <noreply@paperclip.ing>	2026-09-28 19:15:33 -07:00

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