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| Author | SHA1 | Message | Date | |
|---|---|---|---|---|
 DottaandPaperclip
|
915edcff49 |
fix(workspaces): preserve archived native recovery during migration (#20424)
## Thinking Path > - Paperclip is the open source app people use to manage AI agents for work. > - Durable workspace migration must retain saved files and pending recovery work. > - An archived Git workspace can have an authenticated restore recipe and a terminal native run with pending remote files. > - Its task can select a different workspace. Reopening the archived workspace would change that task. > - The current migration owner refuses this source because it has no live local directory. > - This pull request uses the existing online recovery preservation owner for this exact archived recipe case. > - Migration retains the old task, provider allocation, recovery action, and native sync reference. ## Linked Issues or Issue Description Refs #20298, #20394, and #20418. Related cleanup work in #19812 does not cover this migration case. **What happened?** A historical archived Git workspace with a saved restore recipe and a terminal prepared native sync reference cannot migrate online. Admission reports `remote_copyback_unresolved` and `workspace_recovery_unresolved`. The old task can already select another workspace, so reopening it is not a safe migration path. **Expected behavior** Authenticate the archived files into private scratch. Preserve all typed native and provider recovery obligations in the existing migration journal and markers. Keep the original task selection, history, archive state, and restore flags unchanged. **Steps to reproduce** 1. Archive a Git worktree with staged, unstaged, and untracked files in a saved recipe. 2. Retain a terminal failed native run, its prepared sync reference, and its matching remote allocation and recovery action. 3. Remove the old local worktree and select a different workspace on the task. 4. Call `migrateRemoteWorkspace` without `writersStopped`. **Paperclip version or commit** Reproduced on `b2a7d322ed0bafda04a0b78ce14e4f25c8d5d170`. **Deployment mode** Self-hosted server with PostgreSQL and configured object storage. ## What Changed - Permit the existing online recovery owner to inspect recipe-backed archived Git sources. - Acquire the existing native finalization locks for those sources. Reinspect their exact proofs after lock acquisition and before publication. - Lock related source-task ancestry before publication. - Reuse the existing private Git restore, authenticated archive, journal, marker, and recovery-source contracts. Add no schema or provider calls. - Leave active sources and archived sources without a valid recipe on their existing refusal paths. - Include the shared UI correction from #20418. A nullable draft override follows fresh task data when the user has no local choice. Explicit choices increment a generation. Normal and recovered successful sends clear only their own choice; failed sends and newer choices remain intact. ## Verification - Unchanged master RED: the new historical-source fixture fails with `remote_workspace_migration_blocked:remote_copyback_unresolved,workspace_recovery_unresolved`. - Five focused real PostgreSQL, filesystem, Git, and encrypted-storage tests pass on Node 24.22.2. The success case loses an upload reply, resumes the same operation and snapshot, restores the staged/unstaged/untracked bytes, and verifies unchanged task history, lease, recovery action, finalizer, and recipe flags. - Recipe, prepared reference, and provider allocation changes during the actual upload each refuse publication. A competing native finalization owner refuses before capture. - Migration command: `pnpm exec vitest run server/src/services/remote-workspace-migration.test.ts -t 'unselected archived recipe|archived prepared source|competing native F owner'`. - All server typecheck layers, module boundary checks, and whitespace checks pass for the migration revision. The migration source bytes remain unchanged through the shared UI follow-ups. - Initial CI run 42727051535 exposed an existing planning-mode browser failure: shard 3/8 passed 33 cases but the refreshed task mode did not appear. The same issue occurred twice on #20418. A real local regression proved that initial cached data could leave the composer in its old mode. This path does not invoke migration. - Review then exposed genuine defects in the initial shared UI repair: an optimistic save rollback could reset a failed draft, and an earlier send could replace a newer draft choice. Recovered delivery also left a consumed choice pinned. All three have real RED→GREEN controls. The final shared fix uses an explicit nullable override, a choice generation, and one attempt-bound settlement owner for normal and recovered success, with no value-equality inference or durable payload changes. - Exact shared UI source now passes all 145 composer tests (2.88s), the original desktop/mobile planning browser case (15.5s; assertions and timeouts unchanged), token gates, and the canonical UI typecheck. The test harness uses the full persisted `IssueWorkMode` type, including `skill_test`, to fix the observed CI typing failure. - These UI results are reused from the identical shared source in #20418 through `ba1f85f18085dd0e84c594ed0cb68d5bf817c93c`. The unchanged planning browser pass is on the explicit-state model before the later settlement-helper extraction. The final receipt/resend controls, full composer suite, typecheck, and token gates include that extraction. They do not claim a local browser run on this entire combined branch. Fresh required CI and review qualify this PR head. - Previous-release state: existing recipe, v3 prepared reference, and journal shapes carry forward unchanged. A saved partial operation resumes with the same IDs. Migration does not certify remote file recovery or provider termination. Live provider recovery and hosted migration remain separate acceptance steps. ## Risks The change admits one more source class into an existing preservation path. An incorrect proof could publish incomplete file authority. The canonical recipe validation, full authenticated restore, native finalization locks, source reinspection, and publication checks remain mandatory. Pending remote data stays pending and retains its original allocation and reference. The shared UI repair updates only an unchanged draft mode; its regression checks preserve a local user choice. ## Model Used OpenAI Codex, GPT-6, with reasoning, repository tools, and code execution. The runtime does not expose a deployment suffix or context-window size. ## Checklist - [x] I have included a thinking path that traces from project context to this change - [x] I have specified the model used (with version and capability details) - [x] I have checked ROADMAP.md and confirmed this PR does not duplicate planned core work - [x] I have searched GitHub for duplicate or related PRs and linked them above - [x] I have either (a) linked existing issues with `Fixes: #` / `Closes #` / `Refs #` OR (b) described the issue in-PR following the relevant issue template - [x] I have not referenced internal/instance-local Paperclip issues or links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip` URLs) - [x] My branch name describes the change (e.g. `docs/...`, `fix/...`) and contains no internal Paperclip ticket id or instance-derived details - [x] I have run tests locally and they pass - [x] I have added or updated tests where applicable - [x] I have updated relevant documentation to reflect my changes - [x] I have considered and documented any risks above - [ ] All Paperclip CI gates are green - [ ] Greptile is 5/5 with no open P2s, recommendations, or follow-ups - [x] I will address all Greptile and reviewer comments before requesting merge --------- Co-authored-by: Paperclip <noreply@paperclip.ing> |
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|
DottaandPaperclip
|
3040448da5 |
fix(workspaces): refresh saved cohort source proofs on resume (#20429)
## Thinking Path > - Paperclip preserves agent work when a control-plane server is replaced. > - Online workspace imports save exact cohort, operation and snapshot identities for restart. > - A cohort proof also includes the complete current companion source scope. > - An independent companion import removes that companion from the local scope. > - The saved cohort then fails resume even when every saved member is unchanged. > - This pull request rechecks the current scope under fresh locks and refreshes its proof for all members in one transaction. > - The benefit is restartable online migration while independent work progresses. ## Linked Issues or Issue Description Refs: #19873, #20394, #20418. Related PR search found the original cohort owner, recovery-proof refresh and separate child-verification reuse. This fix addresses cohort scope freshness. **What happened?** An interrupted cohort rejects resume with `workspace_cohort_membership_changed` after a nonmember companion is migrated. The saved source proof includes companion workspace and task IDs. The exact saved members and their fingerprints can remain unchanged. **Expected behavior** The same saved cohort must resume after fresh admission. It must keep all member, operation and snapshot IDs. Changed members, active owners, changed journals and lost source locks must still refuse publication. **Steps to reproduce** 1. Start a two-member cohort and interrupt the second upload after the first archive is saved. 2. Import an archived nonmember companion through the existing canonical migration owner. 3. Resume the same two-member cohort. The original implementation refuses before it acquires the source fence. **Paperclip version or commit** Reproduced on master `3a5572c9e5`. **Deployment mode** Online administrative workspace migration with PostgreSQL and authenticated snapshot storage. ## What Changed - Admit a changed aggregate scope proof only when every saved member has a running journal and its current fingerprint matches both saved fingerprints. - Keep partial reservations on the original strict aggregate-proof path. Keep exact cohort and operation membership checks. - Run the existing source, lifecycle, recovery and finalizer admission before refresh. Lock member rows, inspect the current scope again, and compare every journal in one transaction. - Change only `cohortMigration.sourceProof`. Preserve all other metadata, identities, archive and recovery records. Abort the complete refresh on cancellation, a changed journal or a lost fence. - Extend the existing real PostgreSQL fixture with partial upload, canonical companion migration, refusal controls, transaction rollback, cold archive restore and replay. - Document the proof lifetime and resume boundary. ## Verification - Canonical Node24 worktree preflight passed. Plugin SDK build prerequisites passed. - Genuine RED on unchanged product: the real partial-upload and companion-import sequence fails with `workspace_cohort_membership_changed` (1 failed; 22 intentionally not selected; 10.44 seconds). - The identical positive passes after the fix (1 passed; 22 intentionally not selected; 9.87 seconds). - The complete focused cohort file passes: 23 tests in 33.33 seconds. Existing controls include changed member fingerprints, foreign and completed journals, active operations, peer cancellation, actual source-fence connection loss and outer-commit failure. - The new sequence also checks a held source lock, a held finalizer lock, cancellation before refresh, and an injected second-member update failure. The failed update rolls back every proof change. Both saved archives restore tracked and untracked work, and replay uses the same cohort. - After one final read-only preflight assertion, that complete new sequence passes again in 14.52 seconds with 22 existing cases intentionally not selected. Server TypeScript passes on the final files. Module boundaries and `git diff --check` pass. - Commands: `pnpm exec vitest run server/src/services/remote-workspace-cohort-migration.test.ts`; final case selection: `-t 'same uploaded cohort'`; `pnpm --filter @paperclipai/server exec tsc --noEmit`; `node scripts/check-module-boundaries.mjs`. - Initial local setup attempts remain nonpasses: sandbox PostgreSQL could not bind localhost, then the new archived companion fixture used a noncanonical repository folder. The corrected fixture uses the existing managed repository path. Neither setup failure is counted as the product RED. - Fresh [Greptile review](https://github.com/paperclipai/paperclip/pull/20429#issuecomment-6755862789) is 5/5 on exact head `6c640c4667b136e5416c1375f491729cf4bb9b49`, with zero inline threads. Required final-head CI is running. Hosted acceptance is not claimed by this PR. ## Risks - The old aggregate proof contains only a hash. Refresh therefore requires durable fingerprints for every saved member and repeats all current admission guards. A partially reserved cohort cannot use this path. - A stale proof must never hide a changed member or a new writer. Current source inspection, P/I/L/F locks, locked member rows, complete journal compare-and-swap and the existing capture and publication checks remain authoritative. - The all-member update must stay atomic. A database fault or cancellation rolls it back. The original cohort, operation and snapshot IDs remain fixed. - The change adds one bounded transaction only when a fully saved cohort's scope proof changes. It adds no recurring work, schema, provider, archive format, concurrency or deployment changes. ## Model Used OpenAI Codex, GPT-6 family, with repository tools and code execution. The runtime does not expose a more specific deployment identifier or context-window size. ## Checklist - [x] I have included a thinking path that traces from project context to this change - [x] I have specified the model used (with version and capability details) - [x] I have checked ROADMAP.md and confirmed this PR does not duplicate planned core work - [x] I have searched GitHub for duplicate or related PRs and linked them above - [x] I have either (a) linked existing issues with `Fixes: #` / `Closes: #` / `Refs: #` OR (b) described the issue in-PR following the relevant issue template - [x] I have not referenced internal/instance-local Paperclip issues or links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip` URLs) - [x] My branch name describes the change (e.g. `docs/...`, `fix/...`) and contains no internal Paperclip ticket id or instance-derived details - [x] I have run tests locally and they pass - [x] I have added or updated tests where applicable - [x] I have updated relevant documentation to reflect my changes - [x] I have considered and documented any risks above - [ ] All Paperclip CI gates are green - [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups - [x] I will address all Greptile and reviewer comments before requesting merge Co-authored-by: Paperclip <noreply@paperclip.ing> |
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Nicky LeachandPaperclip
|
3a5572c9e5 |
Extend login PTY contracts for existing computers (#20410)
## Thinking Path
> - Paperclip manages agent execution across environments.
> - Environment providers own execution resources.
> - Codex and Claude already share the login PTY transport.
> - A login on an existing computer needs its own allocation and
deadline.
> - Input retries must retain their identity.
> - Codex also needs a fixed credential-file read; Claude already
returns its token through PTY output.
> - This change extends the shared contract and keeps both existing
provider parsers.
## Linked Issues or Issue Description
**Problem**
The existing login contract assumes a temporary sandbox. It cannot
describe a login allocation on an existing computer or export its fixed
credential result without generic execution.
**Proposed solution**
Add shared allocation purpose, command identity, PTY deadline, and input
identity fields for both Codex and Claude. Add one optional
credential-result hook for Codex's auth.json file.
**Alternatives considered**
A separate Claude login implementation would duplicate the current
setup-token parser and owner-bound credential writer. Claude continues
to use that existing path. The new artifact hook is Codex-specific
because Claude's setup-token result comes through the existing shared
PTY output stream.
## What Changed
- Export the login contract types from the main SDK entry point.
- Forward login purpose and command through plugin allocation and retain
them in lease metadata.
- Forward the PTY deadline and give each input write a stable identity.
- End a login route when the worker cannot confirm input delivery.
- Preserve the opening company scope for input, stop, and close
callbacks.
- Advertise and dispatch the optional fixed Codex credential-result
hook.
The allocation, deadline, input, output, and cleanup contracts serve
both providers. This PR does not enable either provider on an existing
computer. The dependent consumer PR connects admission, services,
credential completion, and UI for both providers.
## Verification
- Close-ordering regression: all 91 host worker-manager tests passed,
including concurrent close callers waiting behind a held plugin
acknowledgement after input failure. Server TypeScript check passed. All
current CI gates, ordinary review, and the selected follow-up review
pass on
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DottaandClaude Opus 5.5
|
347d85fef3 |
perf(chat): index GitHub review lookups and share review-wait reads (#20400)
## Thinking Path > - Paperclip is the open source app people use to manage AI agents for work. > - GitHub chat endpoints let agents review pull requests. The server reads review state when it lists issues and when it updates GitHub checks. > - On a hosted instance, two GitHub review queries used the most total database time. One query ran about 660,000 times at about 33 ms. The other query ran about 10,000 times at about 1 s. > - The first query finds a source comment's chat link. No index covers `chat_message_links.comment_id`, so each call reads the full table. Issue lists also read the same review waits two times per request. > - The second query joins deliveries, links and runs on a JSON key. The planner walks the agent's run history in creation order and reads each run's context. > - This pull request adds four concurrent indexes, splits the run lookup into two small reads, and shares review-wait reads in one issue-list request. > - The benefit is less background database load, so request reads wait less. The results stay the same. ## Linked Issues or Issue Description **What existing behavior does this improve?** GitHub review state reads. These are the inherited review-wait lookup by source comment, and the review-check lookup of the run that a delivery's comment woke. **Subsystem affected** Server chat channels (GitHub review waits and checks), issue list attention maps, and the database schema. **Current behavior** - `readInheritedGitHubReviewWait` filters `chat_message_links` by `company_id`, `comment_id` and `direction`. No index has `comment_id`, so PostgreSQL reads the full table on each call. The run-origin check does the same lookup first. - An issue list calls the external review-wait read from the review attention map and again from the blocked-inbox attention map. The two maps read the same in-review issues. - `githubReviewCheckState` joins deliveries, links and runs with `context_snapshot->>'wakeCommentId' = comment_id::text`, sorts by `created_at desc` and takes one row. The planner reads the agent's runs in creation order and reads each run context. If no run matches yet, it reads all of them. The delivery filter on `normalized_event` and the link join on `delivery_id` also have no index. **Proposed behavior** The same rows come back from small index reads. Each issue's review wait is read one time per issue-list request. **Reason and benefit** These two statement families used about 33,000 s of database time in one cumulative statistics window. The database had about 50 concurrent active queries, and request reads waited behind this background work. **Breaking changes** None. The migration adds indexes only. ## What Changed - Migration `0456_chat_review_lookup_indexes` builds four indexes with `CREATE INDEX CONCURRENTLY IF NOT EXISTS`. It runs through the existing top-level statement path, which repairs an invalid index on retry: - `chat_message_links_company_comment_idx` on `(company_id, comment_id)` where `comment_id is not null`. - `chat_message_links_delivery_idx` on `(delivery_id)` where `delivery_id is not null`. - `chat_deliveries_github_automatic_delivery_idx` on `(endpoint_id, normalized_event->'githubAutomatic'->'context'->>'deliveryId')` where that value is not null. - `heartbeat_runs_company_wake_comment_idx` on `(company_id, context_snapshot->>'wakeCommentId')`. This index is not partial. The planner does not use expression statistics from a partial index. Without these statistics, it estimates many matches and keeps the creation-order walk. - `githubReviewCheckState` reads the delivery's comment IDs first. If there is a comment, it reads the newest same-agent run with one of these `wakeCommentId` values. If there is no comment, it skips the run read. The comparison stays text equality on `comment_id::text`. - `createExternalReviewWaitReader` shares one read per issue between the review and blocked-inbox attention maps of one issue-list request. The reader exists only for that request. - `doc/DATABASE.md` describes the indexes and the new read order. - `scripts/benchmark-review-lookup-indexes.ts` compares the pre-fix and new code with and without the indexes. `scripts/benchmark-review-lookup-index-migration.ts` times the migration on a large synthetic database. ## Verification Local SQL measurements on a synthetic fixture. They are not production timings. Environment: embedded PostgreSQL 18.1, baseline revision `02bfe71a6b`. Fixture: 50,000 links, 5,000 deliveries with about 2 KiB events, and 4,000 runs with about 12 KiB incompressible contexts. The wake run is in the middle of the run history. Each value is the median server execution time from `EXPLAIN ANALYZE` (2 warmups, 9 samples). The order was: no indexes, indexes, then no indexes again. | Caller and statement | Before (no indexes, two passes) | After | Shared buffers before → after | | --- | --- | --- | --- | | Inherited review wait, link by source comment (same SQL) | 2.72 / 2.36 ms | 0.076 ms | 929 → 12 | | Review check, wake run found | 31.9 / 21.9 ms | 0.29 ms (two statements) | 25,776 → 62 | | Review check, no wake run yet | 71.0 / 47.5 ms | 0.06 ms (two statements) | 34,861 → 12 | - Indexes alone do not fix the review check. The old SQL with the new indexes took 8.6 ms (run found) and 29.7 ms (no run), because it still walked the run history. The new SQL without the new indexes was neutral (23.5 and 35.1 ms). - Service wall times on this shared machine were noisy, so the table reports server execution time. - Correctness: the benchmark fails unless the inherited statement returns the same positional rows in each index state. The check service result and the final wake-run rows of the new code must also match the pre-fix module for both cases. - Migration timing, normal migration runner, synthetic data: 200,000 runs (1.8 GB with 8 KiB incompressible contexts), 500,000 links and 100,000 deliveries. First run 4.2 s; rerun 0.38 s. Separate builds: links by comment 1.5 s, run wake comment 1.1 s, deliveries 0.7 s, links by delivery 0.3 s. All indexes were valid. The run index was 8.3 MB. - New tests: - `server/src/__tests__/github-review-check-state.test.ts` checks that the newest same-agent run is selected. It also checks that other agents, other companies, uppercase IDs, non-string values, list-only `wakeCommentIds`, comment-less links and unknown deliveries do not match. It checks that the generated statements can use the new indexes. - `server/src/services/native-runtime/external-review-wait.test.ts` checks that the reader reads each issue one time, keeps concurrent callers correct, and rejects all waiting callers when a read fails. - Red/green: with the pre-fix `review-check-state.ts`, the behavior test passes and the index test fails. With this change, both pass. - Focused runs pass: `issue-blocker-attention`, `heartbeat-issue-liveness-escalation`, review-wait, review-check-state, external-review-wait, review-repair (106 tests), and `external-chat-wait.integration` (285 tests). `pnpm --filter @paperclipai/server typecheck` and `pnpm --filter @paperclipai/db check:migrations` pass. Commands: ```sh pnpm --filter @paperclipai/server exec tsx ../scripts/benchmark-review-lookup-indexes.ts --baseline-ref=02bfe71a6b pnpm --filter @paperclipai/server exec tsx ../scripts/benchmark-review-lookup-index-migration.ts ``` ## Risks - The migration builds four indexes concurrently. It does not block writes. On a large database, the run index reads every run context one time. The local run took 1.1 s for 1.8 GB from a warm cache. Cold storage on smaller compute can be slower. - The run index adds one entry for each run insert and for each run update that is not a heap-only update. Many runs have no `wakeCommentId`, so these entries hold a null key. - The review check now sends two statements instead of one when a delivery has a comment. Each statement reads only a few index entries. - When two matching runs have the same `created_at`, either can be selected. The previous query had the same tie behavior. - This change does not change the number of in-review issues that one issue list reads. The blocked-inbox map still reads all in-review issues of the company. A smaller scope needs a separate change to the liveness classifier. ## Model Used - Claude Opus 5.5 (`claude-opus-5-5`) by Anthropic, in Claude Code with tool use (shell, file edits, local PostgreSQL benchmarks). ## Checklist - [x] I have included a thinking path that traces from project context to this change - [x] I have specified the model used (with version and capability details) - [x] I have checked ROADMAP.md and confirmed this PR does not duplicate planned core work - [x] I have searched GitHub for duplicate or related PRs and linked them above - [x] I have either (a) linked existing issues with `Fixes: #` / `Closes #` / `Refs #` OR (b) described the issue in-PR following the relevant issue template - [x] I have not referenced internal/instance-local Paperclip issues or links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip` URLs) - [x] My branch name describes the change (e.g. `docs/...`, `fix/...`) and contains no internal Paperclip ticket id or instance-derived details - [x] I have run tests locally and they pass - [x] I have added or updated tests where applicable - [x] I have updated relevant documentation to reflect my changes - [x] I have considered and documented any risks above - [ ] All Paperclip CI gates are green - [ ] Greptile is 5/5 with no open P2s, recommendations, or follow-ups - [x] I will address all Greptile and reviewer comments before requesting merge 🤖 Generated with [Claude Code](https://claude.com/claude-code) --------- Co-authored-by: Claude Opus 5.5 <noreply@anthropic.com>canary/v2026.1110.0-canary.0 |
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DottaandClaude Opus 5.5
|
326df52673 |
perf(api): rank Mine inbox candidates from the participation set (#20413)
## Thinking Path
> - Paperclip is the open source app people use to manage AI agents for
work.
> - The Mine inbox reads `GET /api/companies/:companyId/inbox/mine`. Its
main query is `issueService.list` with "touched by me", "not archived by
me", six statuses including `done`, and `LIMIT 100` by canonical last
activity.
> - That query evaluates `touchedByUserCondition` (a five-way OR of
EXISTS) on every status-matching issue in the company. Because `done` is
included, the scan grows with company history, not with the user's work.
> - The unread badge already solved the same problem with a UNION of
indexed participation sources (#17973). The list path did not.
> - This pull request makes the Mine list rank page ids from that same
participation UNION, then load full rows (with the expensive select-list
subqueries) only for the 100 selected ids.
> - The benefit is that the main Mine query scales with the user's
participation instead of the company's issue count. Results stay
identical, and a new test proves it against the original scan.
## Linked Issues or Issue Description
**What existing behavior does this improve?**
The latency of the Mine inbox snapshot, `GET
/api/companies/:companyId/inbox/mine`.
**Subsystem affected**
Server: issue list service (`server/src/services/issues.ts`) and the
Mine route.
**Current behavior**
Measured on 2026-11-09: 280–570 ms server time on a dev instance and
1.9–3.2 s on staging. The list query scans every status-matching issue
(28k of 30k in the fixture below) to test participation, then sorts the
touched ones.
**Proposed behavior**
The list query reads only the user's participation set and computes the
row projection only for the page.
**Reason and benefit**
Inbox opens are frequent. The old cost grows with every completed task
in the company.
Refs #17973 (same UNION for the unread badge).
## What Changed
- Extracted the participation UNION from `unreadInboxIssueIds` into
`mineParticipationIssueIds()`. The unread badge uses it unchanged.
- New `IssueFilters.touchedCandidates: "participation"`. When it is set
with `touchedByUserId` (and there is no search and no
`oneChildPerParent`), `list`:
1. replaces `touchedByUserCondition` with `issues.id IN (<participation
UNION>)`. Each UNION member is one OR branch of the old condition, so
the set is the same;
2. runs a narrow `candidates` query (`SELECT id … WHERE <all other
filters> ORDER BY <same order> LIMIT/OFFSET`);
3. loads the full projection for only those ids (re-checking company,
visibility and the read condition), and restores the phase 1 order.
- Only the Mine route sets the flag. Every other `svc.list` caller keeps
the old SQL.
- A new Server-Timing phase, `inbox_issues_candidates`.
- `server/src/__tests__/inbox-mine-candidates.test.ts`: a
result-equivalence test.
- `scripts/benchmark-inbox-mine.ts`: a local benchmark that seeds a
large fixture, compares full payloads, and records `EXPLAIN (ANALYZE,
BUFFERS)` per query.
### Not changed, with evidence
- **Recomputed comment/activity maxima** (`lastActivityStatsForIssues`):
0.9 + 0.2 ms per call in the plans. Not worth a second code path.
- **Touched condition inside `userCommentStatsForIssues`**: 1.4–2.1 ms.
Not changed.
- **`liveDescendantCountMapForIssues`**: 12 ms at 30k issues and 40 ms
at 90k. It now costs about as much as the list query. It scans all live
runs and hashes all company issues. It is company-wide work, outside the
candidate selection, so I left it for a separate change.
## Verification
### Correctness
`inbox-mine-candidates.test.ts` runs the old scan and the new path on
the same data. It asserts equal ordered ids and equal full JSON
payloads. Fixture: 170+ touched issues (more than one page, with tied
timestamps) plus these edge cases:
- included: created by me, assigned to me only, user activity, my direct
comment, `done`, pending request addressed to me, archived then
re-activated by a newer outside comment, read state with a later agent
comment, a live child (live descendant count);
- excluded: archived with no newer activity, mention-only, read audit
only (`issue.read_marked`), uppercase entity id, channel-sourced
comment, agent-created with my user id, `cancelled`, hidden, harness,
plugin operation, private to another user (`issueReadSqlCondition`),
answered request, untouched issues, another company.
It also compares other shapes: no archive filter, `status=done` with the
full projection, `offset`/`limit`, ascending order, unrestricted read
condition, a second user, and a user with no participation. Mutation
check: removing the comment source from the UNION makes the test fail.
The benchmark also asserts identical full payloads for every sample of
both arms.
Focused suites (local): `inbox-mine-candidates`, `inbox-mine-routes`,
`authorization-privacy-query`, `issues-unread-inbox`,
`inbox-archive-routes`, `issues-assignee-unread`,
`issues-creation-visibility` — all pass.
### Performance (local SQL measurements)
Command: `pnpm --filter @paperclipai/server exec tsx
../scripts/benchmark-inbox-mine.ts --baseline-ref=18c3f4ef7b
--issues=<N> [--touch-density=<d>]`. Baseline =
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DottaandClaude Opus 5.5
|
4a2eb920cf |
fix(storage): wait out a store outage on a run's critical path instead of failing it (#20299)
## Thinking Path > - Paperclip is the open source app people use to manage AI agents for work > - A cloud instance keeps run logs and evidence in object storage, so a run touches the store as soon as it starts > - In storage chaos wave `w-20261109T145628-s9902` (ST1: 75–176 s windows where every S3 call returns 503), only 1 of 8 tasks finished. A run starting or resuming during an outage failed within a second as `adapter_failed`, generic recovery burned its attempts seconds apart, the task was escalated to the board, and the user saw the raw S3 error > - This pull request treats a transient storage error as an infrastructure wait: the run is retried on a minute-scale schedule, rapid recovery is suppressed, the board shows it as working, and the run error says storage was unavailable > - The benefit is that a store outage of several minutes delays work instead of failing and stranding it ## Linked Issues or Issue Description Refs #19831. Storage chaos wave `w-20261109T145628-s9902` (master `610b54f551`, `--storage s3`, ST1). **Where the run fails.** At run start or resume, `run-output` `begin` opens the run log: `getRunLogStore().begin` → object run log store → object byte journal `claim` → S3 conditional PUT. The journal retries only 3 times within about 300 ms, so a 503 escapes and fails the run as `adapter_failed`. The async stack ends in the SDK middleware with no app frame. `log_store` stays null on the failed run, which pins the claim. **What followed.** - `failRun` released the issue into generic immediate recovery. Recovery retried 1–2 s apart inside the outage (t01: 14:58:33, :35, :59, 14:59:01), then stopped and opened a board-owned `stranded_assigned_issue` action. These are the open recovery actions on CHA-1, CHA-4, CHA-7 and CHA-8; a later Retry hit the outage again and escalated the same way. - The run error was the raw S3 text ("Injected storage outage"). **Slow store (ST2, `w-20261109T151946-s9903`).** With about 9.7 s of added latency per call, the same claim hit the journal's 15 s per-operation deadline (`AbortSignal.timeout(15_000)`). The run failed after about 36 s with `AbortError: Request aborted` and burned 3 runs the same way; 4 of 8 tasks needed a Retry. t02/t03 (Retry parked with `process_identity_missing`) are a separate native-recovery class and are handled in a follow-up. **Daytona storage chaos ST1 (`w-20261109T161202-s9912`, 1/8):** with S3 returning 503 for 72 to 154 s at a time: - Workspace restore failed at once (`remote_workspace_restore_failed: step=snapshot_download; storage=provider_error`), three times in 40 s, then `setup_failed`. It left an active recovery action behind. - Runs reattached after a restart died within 2 s on the run-log claim, then became reconciliation-required. - Setup failed on other storage reads. - 6 of 7 failures needed a UI Retry. So the rule here is one class rule: a transient store error on a run's critical path waits, it never fails the run. ## What Changed - New `server/src/storage/storage-unavailable.ts`: - `isStorageUnavailableError` reads the recorded storage failure diagnostics first, then the SDK error shape. Unavailable means 429/500/502/503/504, the S3 throttling and timeout names, network codes (`ECONNRESET`, `ECONNREFUSED`, `ETIMEDOUT`, `EPIPE`, `EAI_AGAIN`, `ENOTFOUND`), or an `AbortError` whose cause is a `TimeoutError` (a per-operation deadline). 403, 404 and 412 are not outages, and neither is an abort caused by the run's own Stop. - It defines the `storage_unavailable` code, the `storage_unavailable_wait` retry reason, the retry policy (60 s × 10 attempts, about 10 minutes) and the user-facing message. - `server/src/services/heartbeat/run-completion.ts`: - `failRun` classifies such a failure as `storage_unavailable` with the plain message. - Unless native recovery owns the run, it schedules the storage wait with `scheduleBoundedRetryForRun`, skips the interaction-continuation retry, and releases the issue with `suppressImmediateRecovery`. - `failRunSetup` uses the same policy for this code. - `server/src/services/heartbeat/retries.ts`: `storage_unavailable` joins the transient infrastructure codes. It gets its own retry budget and policy, like `runner_revision_mismatch`. - `server/src/services/task-interruption-presentation.ts`: `storage_unavailable_wait` is a resource wait, so the board shows the task as working with no Retry while it waits. - **One shared outage wait for the run's critical path** (`server/src/storage/storage-unavailable.ts`): - `retryThroughStorageOutage` retries a transient store failure with backoff (2 s doubling to 30 s) until that storage operation's outage has lasted 5 minutes, then gives the error back. The outermost wait of an operation records its first failure, and nested and parallel waits inside it share that start; no other request's success extends it. Shared probes and shared reads run under their own scope, so one run's Stop never cancels work another run waits on. A stop signal ends the wait, and non-outage errors are never retried. - Inside `waitOutStorageOutages`, every replayable S3 request waits instead of failing: get, head, delete, buffered and file puts, and multipart create, file parts and complete. A consumed upload stream is never resent, and requests outside the scope keep failing fast. - The scope covers run execution (`heartbeat.ts` `executeRun`: setup, workspace restore, run-log claim and the run itself), plus `loadWorkspaceSnapshotArchive` and `uploadWorkspaceSnapshot`, which copy-back and recovery workers use too. - The run-log claim retries as a whole, because the journal bounds each operation with a 15 s deadline. - Past the budget, the run takes the bounded `storage_unavailable` wait below. - The classifier follows the error's `cause` chain, so a restore failure wrapping an outage counts. `failRunSetup` checks storage before restore failures, so that case takes the storage wait instead of two quick retries and an escalation (the R6 leak). - `object-byte-journal.ts`: when its deadline expires, the journal rethrows the recorded storage error instead of a bare `TimeoutError`. ## Verification Red/green (each new test fails against master and passes with this PR): - `run-completion.test.ts` "waits a minute and suppresses rapid recovery when a run fails because storage is unavailable (storage chaos ST1)". An S3-shaped 503 records `storage_unavailable` with the plain message (no raw S3 text), schedules `STORAGE_UNAVAILABLE_RETRY`, releases with `suppressImmediateRecovery: true`, and skips the continuation retry. "keeps an ordinary adapter failure on the normal recovery path" guards the default. - `task-interruption-query.test.ts` "does not present an overdue storage_unavailable_wait wait as a failed attempt": working, `canRetry: false`. - `storage-unavailable.test.ts`: which errors count as an outage and which do not, including recorded diagnostics, a deadline-aborted call (ST2), and a Stop-aborted call that must not count. Static checks: - `tsc --noEmit` passes for `server`. Live verification: Phase 3 will rerun ST1 (seed 9902) with the MinIO fault proxy after merge. - `server/src/__tests__/storage-outage-wait.test.ts` runs against a local S3 that answers 503 for 3 s: - Inside the scope, a snapshot `getObject` and a run-log conditional PUT succeed once the store is back. - Outside it, a request fails fast. - A stop ends the wait. - Unit cases cover the budget, non-outage errors, and a `RemoteWorkspaceRestoreError` wrapping an outage. - `run-completion.test.ts`: a setup failure from a restore that wrapped an outage takes the storage wait (red before). - `object-byte-journal.test.ts`: a real `claim` whose head PUT hits its deadline is classified as a storage outage (red before). ## Risks - A storage outage now holds a task for up to about 10 minutes of automatic waits instead of escalating within seconds. A longer outage still ends in the existing board recovery. - A run whose failure is misclassified as storage-unavailable waits instead of using fast recovery. The classifier accepts only server-side or network failures from the storage SDK, never 4xx answers. - No schema change. - A run can now wait until a storage outage has lasted 5 minutes before it fails over to the bounded wait. It shows as working throughout, and Stop ends the wait. ## Model Used - Claude Opus 5.5 (`claude-opus-5-5`), Anthropic, via Claude Code with tool use (shell, file edits). ## Checklist - [x] I have included a thinking path that traces from project context to this change - [x] I have specified the model used (with version and capability details) - [x] I have checked ROADMAP.md and confirmed this PR does not duplicate planned core work - [x] I have searched GitHub for duplicate or related PRs and linked them above - [x] I have either (a) linked existing issues with `Fixes: #` / `Closes #` / `Refs #` OR (b) described the issue in-PR following the relevant issue template - [x] I have not referenced internal/instance-local Paperclip issues or links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip` URLs) - [x] My branch name describes the change (e.g. `docs/...`, `fix/...`) and contains no internal Paperclip ticket id or instance-derived details - [x] I have run tests locally and they pass - [x] I have added or updated tests where applicable - [x] I have updated relevant documentation to reflect my changes - [x] I have considered and documented any risks above - [ ] All Paperclip CI gates are green - [ ] Greptile is 5/5 with no open P2s, recommendations, or follow-ups - [x] I will address all Greptile and reviewer comments before requesting merge 🤖 Generated with [Claude Code](https://claude.com/claude-code) --------- Co-authored-by: Claude Opus 5.5 <noreply@anthropic.com> |
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DottaandClaude Opus 5.5
|
0116e45958 |
perf(db): index pending budget Stops instead of scanning all run results (#20391)
## Thinking Path > - Paperclip is the open source app people use to manage AI agents for work > - Budget enforcement stops agent runs when a budget hard limit is reached. The stop intent is saved in each run's `result_json` until run control delivers it. > - The budget worker, run control, and the idle-sleep check find these pending stops with a predicate on `result_json`. No index supports that predicate. > - Each check therefore reads every heartbeat run and its large result JSON from TOAST. On a hosted database, this statement family was among the most expensive: about 8,000 calls at about 1 s each, about 9,800 s in total. > - Pending stops are rare. The predicate is constant, so a partial index can contain only those rows. > - This pull request adds that partial index. The SQL that the server sends does not change. > - The benefit is that each check reads a few index entries instead of the full table. The database has more capacity for request work. ## Linked Issues or Issue Description **What existing behavior does this improve?** The check for committed budget Stops that are not delivered yet. The budget worker runs it each time it looks for work (`hasPendingBudgetEnforcement`), and again for each delivery pass (`listPendingBudgetCancellationScopes`). Run control and the idle-sleep check use the same predicate. **Subsystem affected** Budget enforcement in the server (`server/src/services/heartbeat/budget-cancellation.ts`, `server/src/services/budgets.ts`, `server/src/services/heartbeat/run-control.ts`, `server/src/services/idle-sleep-safety.ts`) and the `heartbeat_runs` schema in `packages/db`. **Current behavior** The query groups all rows of `heartbeat_runs` and reads `result_json->'startupCancellation'->'budgetEnforcement'` for each row. A limit of 1 does not help, because the group and sort occur before the limit. Cost grows with the run history, not with the number of pending stops. **Proposed behavior** A partial index, `heartbeat_runs_pending_budget_cancellation_idx`, contains only runs with a pending budget Stop. The planner uses it for all four callers. The results are the same. **Reason and benefit** Local SQL measurements show a 300x to 1,000x decrease in time and buffer reads (see Verification). **Breaking changes** None. ## What Changed - Added the partial index `heartbeat_runs_pending_budget_cancellation_idx` on `heartbeat_runs (company_id)`. Its predicate is identical to `pendingBudgetRunCancellationPredicate`. - Added migration `0455_pending_budget_cancellation_index.sql`. It uses `CREATE INDEX CONCURRENTLY IF NOT EXISTS`, and it is in the list of migrations that run outside a transaction, as `0436` is. - Moved the scoped run-control read and the idle-sleep check into exported builders in `budget-cancellation.ts`, next to the scope list query. The SQL does not change. The callers and the test now share the same statements. - Added a real PostgreSQL regression test. It checks that delivered, malformed, and missing intents are not pending. It also EXPLAINs the statements that the callers send (scope list with limit 1 and 100, scoped read, `EXISTS` check) and requires the new index in each plan. If a person changes a query shape, the server predicate, or the index predicate, the test fails. - Added `scripts/benchmark-budget-cancellation-scan.ts`. It captures the SQL that the real service sends, then compares the plans, timings, and complete rows with and without the index. - Updated `doc/DATABASE.md`. ## Verification Red/green regression test: - Before the migration, the new test failed: the plan was `Seq Scan` with the predicate as a filter. - After the migration: `npx vitest run src/services/heartbeat/budget-cancellation.test.ts` passes (17 tests). - Also passed: `src/__tests__/budgets-service.test.ts`, `src/__tests__/idle-sleep-diagnostics-postgres.test.ts`, `src/services/budget-resume-continuation.test.ts`. - `pnpm --filter @paperclipai/db check:migrations`, and typecheck of `@paperclipai/db` and `@paperclipai/server` pass. Performance and result equality (local SQL measurements only): ```sh pnpm --filter @paperclipai/server exec tsx ../scripts/benchmark-budget-cancellation-scan.ts --runs=20000 --payload-kib=16 [--reverse] ``` - Fixture: embedded PostgreSQL 18.1. 20,241 runs in 2 companies, with incompressible result JSON of about 16 KiB (table 379 MB). 40 pending stops in 6 scopes, 200 delivered or malformed decoys, and 1 cross-company intent. - The SQL is the same in both treatments. The script toggles only the new index. 2 warmups and 7 samples per query. Rows are compared outside the timed part. Ordered queries must match in order. The scoped run-control read has no `ORDER BY`, so it is compared as a multiset. | Query (caller) | Baseline median | With index median | Shared buffers | | --- | --- | --- | --- | | `listPendingBudgetCancellationScopes(db, 1)` (worker `hasPending`) | 688 ms | 2.1 ms | 243,500 → 1,158 | | `listPendingBudgetCancellationScopes(db)` (delivery) | 799 ms | 1.4 ms | 243,500 → 1,158 | | Scoped pending runs (run control) | 357 ms | 1.1 ms | 121,835 → 322 | | `EXISTS` pending (idle-sleep check) | 440 ms | 0.37 ms | 240,560 → 2 | - Reverse order (index first) gave the same result: 524 ms → 1.6 ms, 464 ms → 1.4 ms, 306 ms → 1.0 ms, 306 ms → 0.42 ms. - Plans change from `Seq Scan` (or a broad bitmap scan) to `Index Scan` or `Index Only Scan` on the new index. - All result rows are equal in every run. Migration duration: - 20,241 runs (379 MB): index build 2.0 s to 3.9 s. - 200,241 runs with 8 KiB result JSON (2.1 GB): index build 5.6 s. With this table size, the four queries change from 1,148 / 879 / 514 / 4,392 ms to 1.1 / 1.2 / 0.85 / 8.3 ms. - The build is concurrent, so it does not block run writes. ## Risks - Migration: the build reads every run's result JSON one time. It is concurrent and resumable (`IF NOT EXISTS`). The executor repairs an invalid concurrent index on retry. - Write cost: run writes evaluate the index predicate. The index contains very few rows, so the extra cost is small. - Predicate drift: if a later change edits only one of the two predicates, the planner cannot use the index. The new regression test detects this. - The hosted timings are not measured yet. The local numbers come from a synthetic fixture. ## Model Used - Claude Opus 5.5 (`claude-opus-5-5`), Anthropic, used through Claude Code with tool use (shell, file edits, local PostgreSQL). ## Checklist - [x] I have included a thinking path that traces from project context to this change - [x] I have specified the model used (with version and capability details) - [x] I have checked ROADMAP.md and confirmed this PR does not duplicate planned core work - [x] I have searched GitHub for duplicate or related PRs and linked them above - [x] I have either (a) linked existing issues with `Fixes: #` / `Closes #` / `Refs #` OR (b) described the issue in-PR following the relevant issue template - [x] I have not referenced internal/instance-local Paperclip issues or links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip` URLs) - [x] My branch name describes the change (e.g. `docs/...`, `fix/...`) and contains no internal Paperclip ticket id or instance-derived details - [x] I have run tests locally and they pass - [x] I have added or updated tests where applicable - [x] I have updated relevant documentation to reflect my changes - [x] I have considered and documented any risks above - [ ] All Paperclip CI gates are green - [ ] Greptile is 5/5 with no open P2s, recommendations, or follow-ups - [x] I will address all Greptile and reviewer comments before requesting merge 🤖 Generated with [Claude Code](https://claude.com/claude-code) Co-authored-by: Claude Opus 5.5 <noreply@anthropic.com> |
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DottaandClaude Opus 5.5
|
ab80fea62f |
perf(recovery): probe run bindings per comment in the lost-wake check (#20412)
## Thinking Path > - Paperclip is the open source app people use to manage AI agents for work > - The ownership reconciler finds user comments whose wake a restart lost, and it saves a wake for them (plan invariant 4) > - Its lost-wake check matched a task's runs with one OR across the legacy context ID and the native issue column > - With that OR, PostgreSQL can join runs only by company. It then tests each recent comment against every run of its company and reads each run's context > - On a hosted staging database, this statement used about 23 s per call on average (384 calls, about 8,900 s in total). One call ran for 35 s. Other requests waited behind it > - This pull request reads the check in three stages and probes the two run bindings separately with existing indexes > - The benefit is the same result with bounded, index-driven work for each recent comment ## Linked Issues or Issue Description **What happened?** The reconciler's user-comment lost-wake check was one of the most expensive statements on a hosted staging database. Query statistics showed 384 calls with a mean of about 23 s. One active call was seen at 35 s. The database compute was busy, and short authentication reads waited behind long statements. The statement matched runs with `(context_snapshot->>'issueId' = issue OR native_issue_id = issue)` in three subqueries. The OR gives PostgreSQL no join key except `company_id`. A local plan on synthetic data showed the cost: a hash join of 273 comments against all 38,002 runs, which took 1.0 s of a 1.3 s statement. The work grows with recent comments multiplied by the company's run count, and each test reads a run context. **Expected behavior** Each recent comment uses a small number of indexed probes. The check returns the same comments in the same order, with the same limit and grace logic. **Steps to reproduce** 1. Seed a company with a deep run history and a few hundred recent user comments. 2. Let some recent comments have no wake (for example, after a restart lost the wake of a steered comment). 3. Run the check. PostgreSQL can pick a hash join on `company_id` with the OR as a join filter. With nested loops off, the old statement takes seconds. The local benchmark below shows this. **Paperclip version or commit** Baseline: `02bfe71a6b`. **Deployment mode** Server with PostgreSQL. Local proof uses disposable PostgreSQL 18.1. Production and staging use hosted PostgreSQL. Related: the earlier change that split native and legacy bindings for other ownership reads (see the "Execution recovery query performance" section in `doc/DATABASE.md`). A search found no open pull request for this check. ## What Changed - `checkUserCommentsWithoutWake` reads in three materialized stages: 1. Recent user comments on assigned, non-conversation tasks that no wake request carries. This stage keeps the same issue, status and agent-closed rules. 2. Of those, comments with no live or later run and with at least one earlier run. 3. Of those, comments that no live run acknowledged in an item event (the steer check). Only this stage reads event payloads. - Each run lookup is two probes: one on the legacy context ID and one on the native issue column. Both use existing indexes. `exists (A or B)` becomes `exists (A) or exists (B)`, which is logically the same. - Each probe ends with `offset 0`. This keeps it a per-row index lookup. Without it, PostgreSQL can build a hashed subplan over all runs, or a hash join over all item events of the company. The repository already uses this fence in `execution-blocker.ts`. - The final `order by c.created_at limit N`, the projection, the grace window and the reported reason do not change. - Add `scripts/benchmark-comment-wake-check.ts`. It loads the check from an explicit baseline commit and from the working tree, and it compares the complete service result and the complete positional SQL rows before it records time. - Add a regression test for each run binding on its own: native only, legacy only, live run, later run, steered run, an acknowledgement before the comment, a log-only mention, a run that ended before the comment, and a run in another company. - Document the check and the benchmark command in `doc/DATABASE.md`. - No schema change, index, migration, or new startup work. ## Verification - `pnpm exec vitest run server/src/__tests__/ownership-reconciliation-report.test.ts --maxWorkers=1`: 34 passed. This includes the existing lost-wake, restart, steered and agent-closed tests and the new binding test. - `pnpm --filter @paperclipai/server typecheck`: passed. - `pnpm --filter @paperclipai/server exec tsx ../scripts/benchmark-comment-wake-check.ts --baseline-ref=02bfe71a6b --samples=7` Benchmark setup: PostgreSQL 18.1 (embedded, local), `shared_buffers` 128 MB, `work_mem` 4 MB. All data is synthetic, with md5-hex filler so contexts and payloads do not compress well. There are two companies per fixture. Two warmup rounds, then 7 timed samples for each arm, in alternating order. Each sample runs the real check function. Before any timing, each fixture asserts that the complete check result and every positional SQL row are equal for baseline and treatment, and that the fixture reports at least one owed comment. Every timed sample also asserts the same result. | Fixture | Runs / recent comments / owed | Baseline median | Treatment median | Speedup | Hash-join plan, baseline → treatment | | --- | --- | --- | --- | --- | --- | | small | 2,541 / 50 / 6 | 8.5 ms | 2.6 ms | 3.2x | 19 ms → 3 ms | | representative | 75,502 / 750 / 75 | 26.4 ms | 23.3 ms | 1.1x | 2,262 ms → 17 ms | | lost steer wakes | 38,002 / 750 / 75 | 454.7 ms | 66.9 ms | 6.8x | 2,717 ms → 68 ms | | deep history | 150,750 / 1,125 / 114 | 26.9 ms | 18.8 ms | 1.4x | 4,006 ms → 34 ms | | busy hour | 128,750 / 5,625 / 200 (limit) | 79.2 ms | 47.4 ms | 1.7x | 20,047 ms → 75 ms | | long steered runs (stress) | 19,100 / 600 / 60 | 626.4 ms | 457.4 ms | 1.4x | 5,871 ms → 502 ms | - The table above used baseline `02bfe71a6b`, the branch base at that time. After the rebase, a repeat run with baseline `8004ad069e` (the new merge base, with the helper guard fixed to run from the repository root) gave the same picture on a busier machine: small 15.4 → 9.1 ms, lost steer wakes 1,733 → 139 ms, busy hour 103 → 65 ms, all with equal results. - The "lost steer wakes" fixture shows the slow plan with default planner settings. PostgreSQL hashed all runs by company and tested 273 comments against 38,002 runs. - The last column runs each statement once with `enable_nestloop = off`. This makes the company-only hash join that the old statement allows visible, and it shows that the new statement has no such plan. The result is checked as equal in this mode too. Staging's 23 s mean matches this growth: recent comments multiplied by the company's run count. - Shared buffers fell in every fixture except "small" with default settings (for example, busy hour 176,416 → 89,803). - Neutral path: in the "long steered runs" stress fixture, every steered comment lost its wake. These comments correctly reach the steer check. That check must read the payload of each item event after the comment in the run that was live, so it is the remaining cost. In normal operation a comment sent to a live run has a deferred wake that carries it, so stage one removes it. ## Risks - Low risk. The predicate is the same conjunction of conditions. Only the evaluation order and the probe shape change, and the benchmark asserts complete-row equality on six fixtures and in both planner modes. - Rows with the same `created_at` have no defined order, as before. The benchmark uses distinct times so positional comparison is meaningful. - `offset 0` stops PostgreSQL from turning these probes into joins. If a task someday has a very large number of runs, each probe still uses the company and issue indexes. - Upgrade safety: this change reads saved run, wake and event state only. It changes no persisted shape, run identity, or saved session, so state saved by the previous release carries forward unchanged. A cutover test is not applicable. - Not verified on the hosted database. The local proof uses synthetic data, and I did not capture a hosted plan. Confirm with a fresh query statistics window after deployment. ## Model Used - Claude Opus 5.5 (`claude-opus-5-5`), Anthropic, with tool use (shell, file editing, local PostgreSQL) in Claude Code. ## Checklist - [x] I have included a thinking path that traces from project context to this change - [x] I have specified the model used (with version and capability details) - [x] I have checked ROADMAP.md and confirmed this PR does not duplicate planned core work - [x] I have searched GitHub for duplicate or related PRs and linked them above - [x] I have either (a) linked existing issues with `Fixes: #` / `Closes #` / `Refs #` OR (b) described the issue in-PR following the relevant issue template - [x] I have not referenced internal/instance-local Paperclip issues or links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip` URLs) - [x] My branch name describes the change (e.g. `docs/...`, `fix/...`) and contains no internal Paperclip ticket id or instance-derived details - [x] I have run tests locally and they pass - [x] I have added or updated tests where applicable - [x] I have updated relevant documentation to reflect my changes - [x] I have considered and documented any risks above - [x] All Paperclip CI gates are green - [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups - [x] I will address all Greptile and reviewer comments before requesting merge 🤖 Generated with [Claude Code](https://claude.com/claude-code) --------- Co-authored-by: Claude Opus 5.5 <noreply@anthropic.com> |
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DottaandClaude Opus 5.5
|
60a60a0cd1 |
fix(opencode): attribute unreadable tool-result images to the tool (#20399)
## Thinking Path
> - Paperclip is the open source app people use to manage AI agents for
work
> - The Paperclip runner drives OpenCode agents. It sends their
OpenRouter and Paperclip-connection model calls through a local provider
proxy.
> - An agent often takes a screenshot of its own work and reads it to
verify the result.
> - OpenCode 1.18.34 cannot put images in OpenAI-compatible tool
results. It moves them into a synthetic user message ("Attached media
from tool result:"). For a text-only model, it replaces the image with
"ERROR: Cannot read image (this model does not support image input).
Inform the user."
> - The model reads that text as a message from the person. In a chat
eval, a DeepSeek worker redid its verification for about 5 minutes,
registered its deliverable twice, and ran out of the 15-minute attempt
clock.
> - This pull request moves that notice into the tool result that
produced the image, worded as a runner note, and removes the synthetic
user message.
> - The benefit is that a text-only agent sees a clear tool outcome and
continues its work. It does not mistake the notice for the person.
## Linked Issues or Issue Description
**What happened?**
An OpenCode agent on `openrouter/deepseek/deepseek-v4.1-flash-1017` read
a PNG screenshot that it made. The next model request contained a
user-role message with the text "Attached media from tool result: ERROR:
Cannot read image (this model does not support image input). Inform the
user." The model reasoned "The previous input from the user was ..." and
repeated finished work.
**Steps to reproduce**
1. Run OpenCode 1.18.34 with an `@ai-sdk/openai-compatible` provider and
a model that has no image input.
2. Have the model call the `read` tool on a PNG file.
3. Inspect the next chat-completions request. The last message is the
synthetic user message above.
**Expected behavior**
The model must get the notice as part of the tool result, not as a
message from the person.
**Environment**
Paperclip runner, OpenCode 1.18.34 (qualified pin), OpenRouter and
Paperclip-connection model routes.
## What Changed
- Add
`packages/paperclip-runner/src/drivers/opencode/tool-media-attribution.ts`.
It finds the OpenCode synthetic attachment message only when it directly
follows tool results. It moves each "Cannot read ..." or "empty or
corrupted" notice into the last tool result of that step as a runner
note. It keeps readable media in the synthetic message. It removes the
message when no media remains.
- The OpenCode provider proxy applies this rewrite before it forwards a
request. It re-serializes the body only when something changed.
- Messages written by a person are never changed. A person who attaches
an image to a text-only model still gets "Inform the user", which is
correct for that case.
- Add unit tests for the rewrite and an integration test through the
real provider proxy.
## Verification
- Red: the new proxy test failed before the change (`expected ... to
have a length of 4 but got 5`).
- Green: `npx vitest run
src/drivers/opencode/opencode-server-driver.test.ts
src/drivers/opencode/tool-media-attribution.test.ts` (82 tests pass).
`tsc --noEmit -p packages/paperclip-runner` is clean.
- Real binary: I ran the real OpenCode 1.18.34 binary with a mock
OpenAI-compatible server and had the model read a PNG. The captured
request has exactly the message shape that the test fixture uses.
- `pnpm verify` returned exit 2 (test files outside the resolved
graphs). Required CI supplies broad coverage.
- A paid live run of
`chat-features.runner-opencode.local.task-coordination.delegate-with-context`
will follow in a PR comment.
## Risks
- Low risk. The rewrite matches the exact OpenCode 1.18.34 strings. If a
future OpenCode version changes them, the rewrite does nothing and the
old behavior returns. It does not fail the request.
- The rewrite is deterministic, so prompt-cache prefixes stay stable
across requests.
- No persisted state changes. OpenCode history stays as it is. Sessions
saved before this change also get the rewrite when they resume.
- Providers that do not use the runner provider proxy are not covered by
this change.
## Model Used
- Claude Opus 5.5 (Anthropic), model ID `claude-opus-5-5`, used through
Claude Code with tool use (shell, file edits, test execution).
## Checklist
- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have searched GitHub for duplicate or related PRs and linked
them above
- [x] I have either (a) linked existing issues with `Fixes: #` / `Closes
#` / `Refs #` OR (b) described the issue in-PR following the relevant
issue template
- [x] I have not referenced internal/instance-local Paperclip issues or
links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip`
URLs)
- [x] My branch name describes the change (e.g. `docs/...`, `fix/...`)
and contains no internal Paperclip ticket id or instance-derived details
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [ ] All Paperclip CI gates are green
- [ ] Greptile is 5/5 with no open P2s, recommendations, or follow-ups
- [x] I will address all Greptile and reviewer comments before
requesting merge
🤖 Generated with [Claude Code](https://claude.com/claude-code)
---------
Co-authored-by: Claude Opus 5.5 <noreply@anthropic.com>
|
||
|
DottaandPaperclip
|
88186fe578 |
fix(workspaces): preserve unmaterialized repository intent during migration (#20416)
## Thinking Path > - Paperclip is the open source app people use to manage AI agents for work. > - Workspace migration preserves saved files when a web server becomes replaceable. > - A repository request records intent before any checkout exists. > - Online migration currently requires that request to finish, even when preparation needs credentials and has saved no repository files. > - This pull request preserves that database intent while migrating the existing workspace files. > - Normal admission still owns repository acquisition and authorization after restore. ## Linked Issues or Issue Description **What happened?** Online workspace migration refuses a pending repository request, or a request marked `needs_repair` with `repository_preparation_failed`, even when its contained checkout path does not exist. This can force an unrelated agent turn and credential acquisition before existing files can be preserved. **Expected behavior** Preserve an absent, unpinned repository request unchanged. Migrate the existing files under the normal source locks. Prepare the repository only on a later authorized admission. **Steps to reproduce** 1. Create a task-scoped local workspace with saved files and an absent repository checkout. 2. Keep its repository request pending, or let canonical preparation fail before checkout publication. 3. Attempt online workspace migration. Before this fix, it refuses with `repository_preparation_unresolved`. **Paperclip version or commit** Reproduced against master `8004ad069e`. **Deployment mode** Self-hosted control plane with PostgreSQL and local legacy workspace files. The regression uses real local PostgreSQL and independent filesystem restore. Related migration work: #20371. No duplicate open unmaterialized-request fix was found in the GitHub search. ## What Changed - Accept unchanged pending requests and canonical preparation failures only when no pin or branch exists and the contained checkout path is absent. - Require a proven online source or the existing offline writer-stop contract. - Leave companion workspace requests under their existing strict blocker. Classify the current workspace request with its filesystem check. - Extend existing migration and cold-admission fixtures. Repository rows retain their catalog, requested ref, failure state, timestamps, and identity. ## Verification - RED: the real PostgreSQL/filesystem regression produced two `repository_preparation_unresolved` failures for online pending and failed requests. Offline pending passed. Duration: 24.95 seconds. - Local server TypeScript check passed with Node 24 and pnpm 9.15.4. - GREEN on final head `eeaea6134a56397ca8c12ed8f7009a19c41d79b1`: 18 focused cases passed across the existing migration and cold-admission suites in 77.48 seconds. This covers offline pending intent, online pending/failed intent, active preparation and partial checkout refusals, strict companion requests, publication races, real archive restore, and later normal repository preparation. - The first GREEN attempt reached successful cold preparation, then failed one inherited assertion that expected the old failure code after success. The assertion now expects the canonical owner to clear it. The migration row-equality checks had already passed; no production change was needed for this assertion failure. - Final-head [PR workflow 42723571639](https://github.com/paperclipai/paperclip/actions/runs/42723571639) completed SUCCESS. The [final `ci / verify` gate](https://github.com/paperclipai/paperclip/actions/runs/42723571639/job/129531238991) passed at 2026-11-10 00:08:04 UTC. The full rollup contains 55 successful checks and 4 intentional skips, with no pending or failed checks. Greptile reviewed exact head `eeaea6134a56397ca8c12ed8f7009a19c41d79b1` at 23:52:42 UTC with 5/5, a successful check, and no inline threads. The optional `pnpm verify --explain` selection was invalidated when the assertion commit landed during selection; no verification pass is claimed from it. Focused local tests and required CI supply the verification scope. - The first local test invocation could not resolve the plugin SDK before its local build. It ran no tests. The SDK was then built and the RED regression ran successfully as a failure proof. ## Risks - The failed-request exception is limited to `repository_preparation_failed`. Unknown failures remain blocked. - Active preparation, a pin, a branch, a partial checkout, unsafe paths, and unresolved companion requests still block migration. - Migration does not edit repository intent or grant repository/task access. A restored request can still fail normal preparation if its current authorization or source is unavailable. - Offline migration retains its existing writer-stop and maintenance checks. Online migration retains its source, task, lifecycle, and publication fences. - This patch changes internal migration admission. No schema, public API, user command, or documentation contract changes. ## Model Used OpenAI Codex, GPT-6 family, with reasoning and tool use. The exact serving model ID and context window are not exposed in this session. ## Checklist - [x] I have included a thinking path that traces from project context to this change - [x] I have specified the model used (with version and capability details) - [x] I have checked ROADMAP.md and confirmed this PR does not duplicate planned core work - [x] I have searched GitHub for duplicate or related PRs and linked them above - [x] I have either (a) linked existing issues with `Fixes: #` / `Closes #` / `Refs #` OR (b) described the issue in-PR following the relevant issue template - [x] I have not referenced internal/instance-local Paperclip issues or links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip` URLs) - [x] My branch name describes the change (e.g. `docs/...`, `fix/...`) and contains no internal Paperclip ticket id or instance-derived details - [x] I have run tests locally and they pass - [x] I have added or updated tests where applicable - [x] I have updated relevant documentation to reflect my changes - [x] I have considered and documented any risks above - [x] All Paperclip CI gates are green - [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups - [x] I will address all Greptile and reviewer comments before requesting merge --------- Co-authored-by: Paperclip <noreply@paperclip.ing> |
||
|
DottaandPaperclip
|
b2a7d322ed |
test: preserve runner commit stall acknowledgement invariants (#20383)
Assert that stalled event commits do not advance acknowledgement or committed state. Clarify the limits of historical failure attribution. Preserve the production implementation already merged in #20385. Co-Authored-By: Paperclip <noreply@paperclip.ing> |
||
|
DottaandClaude Opus 5.5
|
50df9a19b9 |
perf(inbox): read only the execution workspaces Mine rows reference (#20388)
## Thinking Path > - Paperclip is the open source app people use to manage AI agents for work > - The Mine inbox is the first page a board user opens to see the tasks that need them > - The page loaded the company's full execution-workspace summary list and kept task rows hidden until that list arrived > - On a company with thousands of workspaces, that read checks each workspace row against the privacy predicate. It was the slowest request on the page > - The inbox needs workspace names only for the workspaces its rows reference, and only when the view shows workspace data > - This pull request adds an `ids` filter to the summary read, makes the inbox request only referenced workspaces, and stops rows from waiting for workspace data when the view does not show it > - The benefit is that Mine rows appear when the task data arrives, and the workspace read becomes a small bounded query ## Linked Issues or Issue Description **What existing behavior does this improve?** The Mine inbox (`/:companyPrefix/issues?view=mine`) shows its task rows late on companies with many execution workspaces. **Subsystem affected** Board UI inbox and the execution-workspace summary API. **Current behavior** The page calls `GET /api/companies/:id/execution-workspaces?summary=true` with no filter. On a large company this returned 8,758 rows (2.5 MB) and took 12.3 s on the server. The reveal gate included this read, so rows appeared at 13.4 s although `inbox/mine` arrived at 1.6 s. **Proposed behavior** The inbox requests summaries only for the workspaces its rows reference. Rows appear when the Mine task data arrives, unless the view shows workspace data. **Reason and benefit** The workspace read becomes a small bounded query, and it leaves the critical path for the default Mine view. **Breaking changes** None. The `ids` parameter is optional and additive. ## What Changed - `packages/shared`: add `executionWorkspaceSummaryIdsQuerySchema` (comma-separated UUIDs, 1–100 distinct values) and `EXECUTION_WORKSPACE_SUMMARY_IDS_MAX`. - `server`: `GET /companies/:companyId/execution-workspaces` accepts `ids`. Bad input returns 422. The service adds `inArray(execution_workspaces.id, ids)`. The company scope and the actor read condition still apply, so privacy does not change. - `ui/src/api/execution-workspaces.ts`: `listSummaries` accepts `ids`. New `listSummariesByIds` reads ids in chunks of 100 and concatenates the results. - `ui/src/pages/Inbox.tsx`: the workspace query is keyed on the sorted distinct `executionWorkspaceId`s of the rows the inbox holds (Mine, touched, context and remote search issues). It uses `keepPreviousData` and runs only when isolated workspaces are on and at least one id exists. - Reveal gate: rows wait for the workspace read only when workspace data changes what the rows show. This is workspace grouping, a visible Workspace column, or an active search (workspace names are searchable). Otherwise rows reveal without it. - Tests: route ids pass-through and 422 cases (non-uuid, empty, separators only, more than 100); service test for the id filter with company scope and the read condition; UI api chunking test; Inbox tests for "rows reveal while the workspace read is pending when no workspace column or grouping is active", rows waiting when the Workspace column is visible, and "shows the resolved isolated workspace name" with the id-filtered call. Follow-ups (not changed here, they still read the unfiltered list): - `ui/src/pages/LegacyInbox.tsx:772` - `ui/src/components/IssuesList.tsx:985` - `ui/src/components/LegacyIssuesList.tsx:888` - `ui/src/components/NewIssueDialog.tsx:570` (filtered by project and reuse, but not by ids) ## Verification Focused checks on this revision: - `cd server && npx vitest run src/__tests__/execution-workspaces-routes.test.ts src/__tests__/execution-workspaces-service.test.ts -t "summar|ids"`: 14 passed (embedded Postgres ran the service test). - `cd ui && npx vitest run src/api/execution-workspaces.test.ts src/pages/Inbox.test.tsx`: all passed. - `pnpm --filter @paperclipai/server --filter @paperclipai/ui --filter @paperclipai/shared typecheck`: passed. - `pnpm check:token-gates`: clean. - `pnpm verify` selected 2,481 Vitest files (the shared validator change reaches most suites). I stopped it at a 25-minute limit on a heavily loaded shared host. Before the limit, three server tests outside this change failed: `agent-commentary-skills` (skill mount), `agent-config-read-access` (24.8 s timeout) and `agent-directory-working-copies`. Required CI supplies the full coverage. - Review fix `fc3f82dae0`: when workspace data is visible, the reveal gate also waits while `keepPreviousData` supplies the previous id set's summaries. A new test switches Mine → Recent to a new workspace and checks the Recent row stays hidden until its workspace loads. It fails without the change. - Follow-up commits `bf34f84823` and `8fc743b5ca` add a 100-row Mine test with a counted workspace id scan. It fails with the old `= []` defaults and passes with the stable `NO_ISSUES` default. Performance (local, synthetic fixture): - Instance: isolated worktree instance, `authenticated` mode, signed in as a non-admin company member so the real workspace privacy predicate runs. Production UI bundle (`PAPERCLIP_UI_DEV_MIDDLEWARE=false`). Headless Chromium 1440×900, a new browser context per run (cold HTTP cache and cold query cache). macOS, Apple Silicon, with other local sessions running. - Fixture: 8,750 execution workspaces (each with a source task and a privacy-source key), 38,750 tasks, 150 Mine tasks; the Mine snapshot returns 100 rows that reference 100 workspaces. - Finish event: the first `[data-slot="task-row"]` is in the DOM. | Measurement | Before (`02bfe71a6b`) | After | | --- | --- | --- | | Cold time to rows, median of 7 | 1,209 ms (1,046–1,312) | 702 ms (567–1,209) | | Workspace summary read, server wait (time to first byte), median of 7 | 496 ms unfiltered, 2.0 MB | 18 ms with 100 ids, 22 KB | The difference of medians is 507 ms. This is close to the unfiltered read's wait on this fixture (about 550–590 ms in the browser runs). The runs were sequential batches, not alternating pairs. Limits: this fixture does not reproduce the 12.3 s server time seen on the development instance. Here the unfiltered read cost 0.5–1.7 s and grew with the company's task count. The browser gain on the original instance should be close to that instance's unfiltered read time, but I did not measure it there. ## Risks - Low risk. The `ids` filter only narrows the existing query. It does not change the read condition or the company scope. - A row whose workspace is not readable by the actor shows no workspace name, as before. - When the Workspace column or grouping is visible, rows still wait for the workspace read. That read is now small. - When the id set changes, the query refetches all chunks. Before a view first reveals, rows wait for the new summaries if workspace data is visible. After that, the previous names stay visible while a refresh loads. ## Model Used - Claude Opus 5.5 (`claude-opus-5-5`), Anthropic, via Claude Code with tool use (shell, file edit, headless browser). Extended reasoning on. ## Checklist - [x] I have included a thinking path that traces from project context to this change - [x] I have specified the model used (with version and capability details) - [x] I have checked ROADMAP.md and confirmed this PR does not duplicate planned core work - [x] I have searched GitHub for duplicate or related PRs and linked them above - [x] I have either (a) linked existing issues with `Fixes: #` / `Closes #` / `Refs #` OR (b) described the issue in-PR following the relevant issue template - [x] I have not referenced internal/instance-local Paperclip issues or links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip` URLs) - [x] My branch name describes the change (e.g. `docs/...`, `fix/...`) and contains no internal Paperclip ticket id or instance-derived details - [x] I have run tests locally and they pass - [x] I have added or updated tests where applicable - [x] I have updated relevant documentation to reflect my changes - [x] I have considered and documented any risks above - [ ] All Paperclip CI gates are green - [ ] Greptile is 5/5 with no open P2s, recommendations, or follow-ups - [x] I will address all Greptile and reviewer comments before requesting merge 🤖 Generated with [Claude Code](https://claude.com/claude-code) --------- Co-authored-by: Claude Opus 5.5 <noreply@anthropic.com> |
||
|
DottaandClaude Opus 5.5
|
1c868b86be |
fix(server): tell agents who owns a plugin-managed routine and where it is changed (#20409)
## Thinking Path
> - Paperclip is the open source app people use to manage AI agents for
work
> - A plugin can create and own routines ("plugin-managed routines").
The routine row shows the plugin in `managedByPlugin`.
> - An agent reads routines through `GET` and `PATCH
/api/routines/{id}`. These API catalog entries had no description.
> - So an agent that read `managedByPlugin` did not know what it meant
or where a person changes the routine.
> - In chat evals, the agent searched for managed-routine routes and
probed plugin files for over four minutes. It did not reply.
> - This pull request adds one shared description to both catalog
entries. It says the plugin owns the definition, links the board's
plugin settings page, and tells the agent not to rewrite, detach or
duplicate the routine.
> - The benefit is that the agent can answer at once and send the person
to the correct page.
## Linked Issues or Issue Description
No public issue exists. This is a bug report.
**What happened**
A person asked the CEO agent in chat to rewrite a routine that a plugin
manages. The agent read the routine and saw `managedByPlugin`. No tool
result or catalog entry told it what that field means. The agent
searched the API catalog ("plugin managed routine", "managedByPlugin",
"detach plugin managed routine"), tried to read plugin UI files, and
listed agents. After more than four minutes it had not replied, and the
chat timed out. This happened in two separate runs.
**Expected behavior**
The agent replies promptly. It says that the plugin owns the routine,
does not rewrite or copy it, and links the plugin settings page where a
board user changes what the plugin exposes.
**Steps to reproduce**
1. Install a plugin that declares a managed routine (`routines.managed`
capability, top-level `routines[]`).
2. Open a chat with the CEO and select the routine.
3. Ask: "Rewrite this plugin's daily maintenance routine."
4. Look at the agent's `search_api` results for `GET /api/routines/{id}`
and `PATCH /api/routines/{id}`. They have no description.
## What Changed
- `server/src/routes/openapi.ts`: add a shared
`PLUGIN_MANAGED_ROUTINE_GUIDANCE` description to `GET
/api/routines/{id}` and `PATCH /api/routines/{id}`. It names
`managedByPlugin`, links `[plugin
settings](/<prefix>/company/settings/instance/plugins/<pluginId>)`, and
tells agents to reply with that link instead of rewriting, detaching or
duplicating the routine. The `PATCH` entry also states the existing
agent rule (own routines only, no reassignment).
- `server/src/__tests__/plugin-managed-routine-guidance.test.ts`: new
regression test. The queries the agent actually used now find these
entries with the guidance, and the linked settings route is mounted in
`ui/src/App.tsx`.
## Verification
- Red then green: `cd server && npx vitest run
src/__tests__/plugin-managed-routine-guidance.test.ts` failed 6/6 before
the change and passes 6/6 after.
- `cd server && npx vitest run
src/services/native-runtime/runner-api.test.ts
src/__tests__/openapi-routes.test.ts
src/__tests__/person-only-page-guidance.test.ts
src/__tests__/case-history-api-discovery.test.ts
src/__tests__/skill-import-discovery.test.ts` passes.
- `cd server && npx tsc --noEmit -p .` passes.
- Live chat eval `routines.plugin-managed-routine` on a branch with this
commit: see the comment on this PR for the run.
## Risks
- Low risk. The change adds documentation text to two API catalog
entries. Routes and permissions do not change.
- The catalog search scores description words, so these two entries can
rank a little higher for queries about plugins or managed resources.
## Model Used
- Anthropic Claude Opus 5.5 (`claude-opus-5-5`), tool use and code
execution in Claude Code.
## Checklist
- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have searched GitHub for duplicate or related PRs and linked
them above
- [x] I have either (a) linked existing issues with `Fixes: #` / `Closes
#` / `Refs #` OR (b) described the issue in-PR following the relevant
issue template
- [x] I have not referenced internal/instance-local Paperclip issues or
links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip`
URLs)
- [x] My branch name describes the change (e.g. `docs/...`, `fix/...`)
and contains no internal Paperclip ticket id or instance-derived details
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [ ] All Paperclip CI gates are green
- [ ] Greptile is 5/5 with no open P2s, recommendations, or follow-ups
- [x] I will address all Greptile and reviewer comments before
requesting merge
🤖 Generated with [Claude Code](https://claude.com/claude-code)
---------
Co-authored-by: Claude Opus 5.5 <noreply@anthropic.com>
|
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|
DottaandClaude Opus 5.5
|
e1010e7678 |
perf(api): per-phase Server-Timing for the Mine inbox snapshot (#20408)
## Thinking Path
> - Paperclip is the open source app people use to manage AI agents for
work.
> - The Mine inbox page reads one snapshot: `GET
/api/companies/:companyId/inbox/mine`.
> - This read is slow. It takes 280–570 ms on a dev instance and 1.9–3.2
s on staging.
> - The response has only the total `paperclip_api` Server-Timing value.
We cannot see which phase is slow.
> - Issue detail already reports per-phase Server-Timing
(`issue-read-timing.ts`). The Mine snapshot does not.
> - This pull request adds per-phase Server-Timing to the Mine snapshot,
including each lookup inside the issue list.
> - The benefit is that DevTools on any instance shows the slow phase
directly. A follow-up PR uses it to prove a query rewrite.
## Linked Issues or Issue Description
**What existing behavior does this improve?**
The Server-Timing header of `GET /api/companies/:companyId/inbox/mine`.
**Subsystem affected**
Server API: issues routes and the issue list service.
**Current behavior**
The header has only `paperclip_api;dur=…`. Slow access checks, issue
lists, parent context, failed-run reads and list enrichment lookups all
look the same.
**Proposed behavior**
The header also has `paperclip_inbox` (total) and one `inbox_<phase>`
entry for each phase that ran.
**Reason and benefit**
We need phase evidence from staging and production to rank the slow
parts. No telemetry is sent; this is a response header only.
## What Changed
- Added `server/src/services/inbox-mine-timing.ts`. It times closed,
content-free phases and formats a Server-Timing value. It emits no spans
and no telemetry events.
- `issueService.list` accepts an optional third argument, `{ timePhase
}`. It wraps the list's own reads: `query`, `labels`, `active_runs`,
`user_stats`, `read_stats`, `last_activity`, `archives`, `blocked_by`,
`live_descendants`, `attention`. Callers that do not pass it are
unchanged.
- The Mine route reports `inbox_access`, `inbox_issues`,
`inbox_parents`, `inbox_failures`, `inbox_failure_context` and
`inbox_issues_<list phase>`. The existing middleware merges these with
`paperclip_api`.
- The index-projection list no longer awaits a `Promise.all` of
already-empty attention maps. The result is the same.
- `inbox-mine-routes.test.ts` asserts that all phases are present with a
valid duration.
## Verification
- `pnpm --filter @paperclipai/server exec vitest run
src/__tests__/inbox-mine-routes.test.ts` — 6/6 pass, including the new
header assertion.
- `tsc --noEmit -p server` — no errors in the changed files.
- `pnpm verify --explain` selects 2,417 of 3,204 test files for this
change, because `services/issues.ts` is imported almost everywhere. I
did not repeat that full suite locally (AGENTS.md §7); required CI
supplies it.
- Manual: open the Mine inbox, then DevTools → Network → `inbox/mine` →
Timing. The phases show under Server Timing.
## Risks
- Low risk. The header adds about 13 short entries. Phase names are
fixed strings and contain no task data.
- `timePhase` is optional, so other `svc.list` callers do not change.
## Model Used
- Claude Opus 5.5 (`claude-opus-5-5`), Anthropic, via Claude Code with
tool use (shell, file edits). Standard context window; extended thinking
not used.
## Checklist
- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have searched GitHub for duplicate or related PRs and linked
them above
- [x] I have either (a) linked existing issues with `Fixes: #` / `Closes
#` / `Refs #` OR (b) described the issue in-PR following the relevant
issue template
- [x] I have not referenced internal/instance-local Paperclip issues or
links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip`
URLs)
- [x] My branch name describes the change (e.g. `docs/...`, `fix/...`)
and contains no internal Paperclip ticket id or instance-derived details
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [ ] All Paperclip CI gates are green
- [ ] Greptile is 5/5 with no open P2s, recommendations, or follow-ups
- [x] I will address all Greptile and reviewer comments before
requesting merge
🤖 Generated with [Claude Code](https://claude.com/claude-code)
---------
Co-authored-by: Claude Opus 5.5 <noreply@anthropic.com>
|
||
|
DottaandClaude Opus 5.5
|
7a93cc6215 |
fix(server): redact invitation tokens from agent run logs (#20360)
## Thinking Path > - Paperclip is the open source app people use to manage AI agents for work. > - People join a company through an invitation link. The link carries a bearer token in its URL path. > - An agent can create an invitation in chat and give the person the join link. > - The server writes each agent run to a run log file (`.ndjson`). This file is a plain diagnostic copy. Local agents run as the same OS user, so they can read it. > - #20343 removed invitation tokens from HTTP logs. The run log still kept the full join link and the raw token. > - This pull request removes invitation tokens from run-log chunks when the server writes them. > - The benefit is that a live join link does not stay in a file that other local agents can read. The person still gets the working link in the chat reply. ## Linked Issues or Issue Description Refs #20343 (same token policy for HTTP logs). **What happened?** An agent created an invitation in chat and replied with a `/invite/<token>` join link. The agent run log file under `data/run-logs/` kept the full token. The token was in the agent message and in the tool result. **Expected behavior** The run log keeps the route and drops the token: `/invite/***REDACTED***`. A raw `pcp_invite_...` token also becomes `***REDACTED***`. The chat reply that the person reads keeps the working join link. **Steps to reproduce** 1. Check out master. 2. Run `server/src/services/heartbeat/run-log.test.ts` from this PR. 3. The "run-log invitation token privacy" tests fail. The token stays in both the legacy text chunk and the canonical native envelope. **Paperclip version or commit** Master at the merge base of this branch. **Deployment mode** Source server, local run logs (`local_file`). The same functions also format object-store run logs. ## What Changed - Add `redactInvitationTokens()` in `server/src/middleware/invitation-token-redaction.ts`, next to the HTTP log redactor from #20343. It removes the token from `/invite/<token>` segments and from raw `pcp_invite_` tokens inside free text and JSON text. The character classes stop at JSON, Markdown and URL delimiters, so the record structure stays valid. `redact-sensitive.ts` stays byte-identical, because the chat eval pins its exact bytes before it accepts a real invitation link. - Apply it in `compactRunLogChunk()` and `redactCanonicalNativeRunLogChunk()`. These are the two functions that format every agent run-log chunk before the store writes it. The run excerpt columns use the same chunk, so they are also redacted. - `canonicalNativeRunLogRedactionForms()` also yields the earlier, unredacted projection. A run log written by an earlier release still verifies after an upgrade. - `restoreCompactedEvent()` accepts a truncated record that the earlier compactor wrote with the token. Cold recovery of such an old log still works. - Add a test that proves the chat reply comes from database run events, not from the run log. The reply keeps the full join link, and the presentation path never reads the run log. ## Verification - From `server`: `node ../node_modules/vitest/vitest.mjs run --config vitest.config.ts src/services/heartbeat/run-log.test.ts src/__tests__/invitation-token-redaction.test.ts src/__tests__/redact-sensitive.test.ts src/__tests__/heartbeat-run-log.test.ts src/__tests__/logger-invitation-redaction.test.ts src/services/native-runtime/native-run-log-watermark.test.ts src/services/native-runtime/native-run-log-recovery.test.ts src/__tests__/heartbeat-run-output.test.ts src/services/native-runtime/agent-chat-response-recovery.test.ts` passes. - Before the `run-log.ts` change, the two new redaction tests in `run-log.test.ts` failed (red), then passed (green). - `native-run-log-watermark.test.ts`: a legacy-compacted record with a token in its retained head cold-recovers. It failed with `native_log_source_coverage_unproven` before the restore fix. - `agent-chat-response-recovery.test.ts` (embedded Postgres): a final reply with a join link is saved as the exact comment with the token. No run-log read happens. - `tsc --noEmit -p server` shows no errors in the changed files. - A live chat eval (`access.invite-teammate`) run with this change confirms the run-log file has no token. The run is linked in a comment. ## Risks - Low risk. Run-log readers (run transcript view, feedback export, support inspection) now show `***REDACTED***` in place of invitation tokens. This removes a live credential from a diagnostic copy. It does not change the chat reply or the stored run events. - A path segment after `/invite/` in free text is always redacted, even if it is not a token. This loses only diagnostic detail. - A token that a provider streams across two separate chunks is not joined first. Each chunk is redacted on its own. A complete token in one chunk, such as a final message or a tool result, is removed. > For core feature work, check [`ROADMAP.md`](ROADMAP.md) first and discuss it in `#dev` before opening the PR. Feature PRs that overlap with planned core work may need to be redirected — check the roadmap first. See `CONTRIBUTING.md`. ## Model Used - Anthropic Claude Opus 5.5 (`claude-opus-5-5`), with tool use and code execution. ## Checklist - [x] I have included a thinking path that traces from project context to this change - [x] I have specified the model used (with version and capability details) - [x] I have checked ROADMAP.md and confirmed this PR does not duplicate planned core work - [x] I have searched GitHub for duplicate or related PRs and linked them above - [x] I have either (a) linked existing issues with `Fixes: #` / `Closes #` / `Refs #` OR (b) described the issue in-PR following the relevant issue template - [x] I have not referenced internal/instance-local Paperclip issues or links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip` URLs) - [x] My branch name describes the change (e.g. `docs/...`, `fix/...`) and contains no internal Paperclip ticket id or instance-derived details - [x] I have run tests locally and they pass - [x] I have added or updated tests where applicable - [x] I have updated relevant documentation to reflect my changes - [x] I have considered and documented any risks above - [ ] All Paperclip CI gates are green - [ ] Greptile is 5/5 with no open P2s, recommendations, or follow-ups - [x] I will address all Greptile and reviewer comments before requesting merge 🤖 Generated with [Claude Code](https://claude.com/claude-code) --------- Co-authored-by: Claude Opus 5.5 <noreply@anthropic.com> |
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|
DottaandPaperclip
|
b09f17fbfd |
fix(agents): repair queued setup through task connection cards (#20361)
## Thinking Path > - Paperclip manages AI agents doing work for people. > - Agent verification must finish before an accepted task can start. > - A missing AI account default can prevent verification before a provider starts. > - Lifecycle policy treated that owned configuration refusal as a temporary failure and retried each minute. > - The accepted turn remained Queued without explaining the prerequisite. > - Park account configuration failures and reuse the task's existing inline connection card. > - Successful repair rechecks verification and releases the original queued turn under its original authority. ## Linked Issues or Issue Description **What happened?** An OpenCode agent selected the responsible user's OpenRouter default, but that default did not exist. Verification retried unchanged configuration indefinitely and its accepted task stayed Queued. **Expected behavior:** Preserve accepted work, explain the setup prerequisite, and let the appropriate person repair it using the existing task connection UI. Completion must verify the agent before starting the same queued turn. Genuine pause, approval and access gates remain effective. **Reproduction:** Create an OpenCode Runner agent with a responsible-user OpenRouter binding and no personal default; assign a task while verification is pending. The base retries verification and shows an unexplained queue. Related: #18702 handles pending task connection recovery after account repair. This PR handles the earlier agent-verification boundary. #20330 addresses a separate Codex governed-wait timeout and is already merged. ## What Changed - Share owned account-selection failure evidence through a pure library contract. Lifecycle policy parks those configuration failures with fixed, redacted guidance; temporary infrastructure errors retain their retries. - Batch setup-state reads for unstarted queued turns. Distinguish manual repair from automatic setup retries and preserve Stop, started/history state and lifecycle holds. - Reuse the existing `connection_intent` card, account selection and completion APIs. Its controller-only `agentSetup` marker accepts only never-started legacy turns; runtime tokens still require a running run. - Address the card to the lifecycle verifier's account owner, preserving the task's execution principal and private-task visibility. Attach missing cards on admission, verification, startup and full recovery, including retained retries and continuations. Repeated delivery and publication remain bounded. A new queued turn supersedes the setup card of a stopped turn; generic connection cards retain cross-run reuse. - Recheck lifecycle verification after usable-account completion, then release the existing turn through the normal readiness path. Preserve decline, Stop, reassignment and changed setup-owner gates. Fence an in-flight verification failure from overwriting a repair; add no provider wake or recurring worker. - Park owned account refusals during resume as well as initial verification. Bind setup cards to the lifecycle operation, settle obsolete deliveries, and keep explicit Retry guidance accurate. - Reuse the router’s existing lifecycle pin for setup repair without rerouting the task, advancing the pool cursor, or replacing its saved binding. Legacy direct-account cards remain readable. - Hide the incorrect Resume banner during setup, retaining genuine manual/budget pause controls. Document the execution and retry contract. ## Verification - Red: eight original behavior assertions failed on the base, including the real selector's retry decision and the real batched queue projection. Six owned selection cases failed classification. Temporary-error presentation, different task/verifier users, retained retry/continuation recovery and the setup Resume banner also have failing-before/passing-after regressions. - Green: 430 affected backend, lifecycle, shared-contract and UI tests passed before the final review corrections. Subsequent focused runs cover one inline card, real account selection/completion, duplicate delivery/publication, verification before readiness, unchanged run authority, private tasks, no extra provider wake, decline/Stop/reassignment, company isolation, invalid runtime tokens, transient retries and redacted diagnostics. - Final setup/card and generic connection-service suites: 49 tests passed. The stopped-turn case failed before the correction, then passed with real account completion, the stopped source remaining cancelled, and the replacement source remaining queued. - After rebase, all 129 focused assertions passed. The local queue suite’s 88 execution assertions passed repeatedly, but its database-fixture teardown exceeded both 30-second and 120-second hooks. An isolated queue case completed, and the setup/connection suites fully passed. The original queue test and cleanup remain unchanged; broad CI supplies the full-suite result. - Server/UI typechecks, module boundaries, token gates and diff checks passed. `pnpm verify --explain` requested broad CI because the execution-contract document changed; no redundant full local suite was substituted. - Real source acceptance: macOS arm64, Node 26.4.0, isolated embedded PostgreSQL and local board identity. Created an OpenCode/OpenRouter agent and task through the API with no default. Admission retained one unstarted turn and produced the existing inline Connect OpenRouter card. The browser opened its credential form and closed it without entering credentials. The same card/run persisted after server restart and reload, with the setup label and no incorrect Resume. The browser also reproduced Stop followed by a new queued turn retaining the stale card on the prior head. On `12f609c98372fd1e50644028db75cfcc8deb210d`, startup superseded the stale card and retained the same replacement turn, with the original turn still cancelled and no provider execution. - The earlier CI case-search failure also reproduces on exact base `0e3fdebea8257bdff11573081c76b306f12db230` without this PR. Its repair is now in master via #20371; this branch is rebased onto it and contains no API-search changes. - Staging's actual Runtime test returned “Connect an account and choose your personal default” before provider startup. The original turn later started independently on deployed code, then hit a separate workspace-export failure. Automatic file recovery subsequently marked that run successful; its task remains Blocked and the trial’s useful output is unverified. This PR is not deployed; provider authentication through its card and downstream publication remain unverified. No account, credential, default, permission or binding was changed during diagnosis. - Previous revision review: Greptile 5/5 on `12f609c98372fd1e50644028db75cfcc8deb210d`, with all four inline findings addressed and resolved. [Full CI passed](https://github.com/paperclipai/paperclip/actions/runs/42713494508) on that revision: 59 successful checks, one neutral check and three intentional skips, with no pending or failed checks. - Latest revision `976bcae993805a8a2222395bbff9394f6791b424`: resume, router and Retry-copy regressions failed before repair. Green: 92 lifecycle/setup/shared tests, 83 setup/generic-connection/router tests, and 137 UI/shared tests. Server/UI typechecks, module boundaries and token gates passed. [Full CI passed](https://github.com/paperclipai/paperclip/actions/runs/42720731137) on this exact revision: 59 successful checks and three intentional skips, with no pending or failed checks. Greptile reviewed this head at 5/5; all six review findings are addressed and resolved. Real Stop/retry acceptance retained the same replacement turn and current-operation card through two actual server restarts, with no provider execution. ## Risks - Known account configuration failures now require repair or explicit Retry. Temporary failures keep automatic retries; accepted work and authority remain intact. - The projection adds one company-scoped batch read only for unstarted queued turns. Card attachment examines at most 100 active candidates and adds no timer, worker, schema or migration. - The optional stored setup-card marker requires an aware reader during rollback. No run/session/checkpoint identity format changes. Setup presentation grants no access and cannot bypass verification or other gates. ## Model Used - OpenAI GPT-6 (Codex), with reasoning, tool use, code editing and test execution. The exact serving model identifier and context-window size are not exposed in this session. ## Checklist - [x] I have included a thinking path that traces from project context to this change - [x] I have specified the model used (with version and capability details) - [x] I have checked ROADMAP.md and confirmed this PR does not duplicate planned core work - [x] I have searched GitHub for duplicate or related PRs and linked them above - [x] I have either (a) linked existing issues with `Fixes: #` / `Closes #` / `Refs #` OR (b) described the issue in-PR following the relevant issue template - [x] I have not referenced internal/instance-local Paperclip issues or links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip` URLs) - [x] My branch name describes the change (e.g. `docs/...`, `fix/...`) and contains no internal Paperclip ticket id or instance-derived details - [x] I have run tests locally and they pass - [x] I have added or updated tests where applicable - [x] I have updated relevant documentation to reflect my changes - [x] I have considered and documented any risks above - [x] All Paperclip CI gates are green - [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups - [x] I will address all Greptile and reviewer comments before requesting merge --------- Co-authored-by: Paperclip <noreply@paperclip.ing> |
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DottaandClaude Opus 5.5
|
8004ad069e |
perf(ui): skip socket reconcile for reads that have no live events (#20398)
## Thinking Path > - Paperclip is the open source app people use to manage AI agents for work > - The board UI keeps company data fresh through `LiveUpdatesProvider`, which listens on a WebSocket and invalidates queries for each event > - The provider closes the socket while the tab is hidden, and events are not replayed, so it invalidates every active query when the socket opens and when the tab returns > - Some of those queries have no live events at all: instance settings, plugin UI contributions, and the person's workspace and sidebar preferences > - Reconciling them adds requests to every tab return and to the first socket open, on a server that is already saturated > - This pull request excludes those reads from the reconcile and gives them a 5-minute stale time > - The benefit is four fewer requests on each tab return and on the first socket open, with no change to company data freshness ## Linked Issues or Issue Description **What existing behavior does this improve?** The burst of requests when a board UI tab regains focus, and the second wave right after page load. **Subsystem affected** Board UI live updates (`ui/src/context/LiveUpdatesProvider.tsx`) and query defaults (`ui/src/main.tsx`, new `ui/src/lib/live-reconcile.ts`). **Current behavior** On a local instance, returning to a hidden Mine tab sends 27 API requests. Those include `instance/settings/experimental`, `workspace-preferences/me`, `plugins/ui-contributions` and `sidebar-preferences/me`. Live events never touch these. The same four re-fire when the socket first opens after load. **Proposed behavior** The socket reconcile skips those four reads. Their stale time is 5 minutes, so a window-focus refetch runs at most every 5 minutes. Their own mutations still invalidate them at once. **Reason and benefit** Each tab return costs four fewer requests. On staging, about 25 requests re-fire together on focus, and every one delays the visible rows. ## What Changed - New `ui/src/lib/live-reconcile.ts`: `LIVE_EVENT_FREE_QUERY_KEYS` (instance settings, general and experimental settings, plugin UI contributions, workspace preferences, sidebar preferences), `isLiveReconciledQuery`, and `applyLiveEventFreeQueryDefaults`. - `LiveUpdatesProvider` passes `isLiveReconciledQuery` as the predicate on its invalidate-all paths: tab return, disconnected polling, socket open, `live.resync`, and the transcript recovery that runs after a resync. The first healthy open still also skips session and health. - `main.tsx` applies the 5-minute stale time to those keys with `setQueryDefaults`. No observer sets its own stale time for them. - Not changed, and why: - `auth/get-session` and `health` keep focus refetch and reconnect handling for sign-out and reconnect detection. - `cli-auth/me` (board access) keeps the reconcile because it detects revoked access. - The company list keeps the reconcile because live events invalidate it. - Company data (agents, chats, projects, approvals, labels, join requests, live runs and others) keeps the reconcile. The socket is closed while hidden, so the reconcile is how missed events arrive. Keeping the socket open while hidden is a larger change and is not in this pull request. - Tests: new `live-reconcile.test.ts` covers the scope and the stale-time defaults. The hidden-tab test in `LiveUpdatesProvider.hook.test.tsx` expects the predicate. ## Verification - `ui`: `npx vitest run src/lib/live-reconcile.test.ts src/context/LiveUpdatesProvider src/lib/query-client.test.ts src/lib/persisted-query-cache.test.ts` passes (283 tests). - `pnpm verify` asks for broader CI coverage because `main.tsx` is outside the resolved test graphs. Required CI provides it. - Manual, on a local instance with the Mine page: hide the tab for 45 s, then show it, and count `/api/` resource entries. `master` sends 27 requests and this branch sends 23. The four reads above are absent; every company read is still present. ## Risks - The reconcile was also how other tabs picked up changes to these reads. A change made in another tab or browser now reaches this tab on its next focus after 5 minutes, or on reload; before, it was the next focus after 30 s. This covers an administrator changing an instance or experimental setting or installing a plugin, and the same person changing their workspace or sidebar preferences in another tab (for example the coordinator or classic shell, or sidebar order). Changes made in the same tab still apply at once. - Low risk otherwise. Only the reconcile predicate and the stale time change. ## Model Used - Claude Opus 5.5 (`claude-opus-5-5`), Anthropic, via Claude Code with tool use (shell, file edits, browser). 1M-token context window. Extended thinking was off. ## Checklist - [x] I have included a thinking path that traces from project context to this change - [x] I have specified the model used (with version and capability details) - [x] I have checked ROADMAP.md and confirmed this PR does not duplicate planned core work - [x] I have searched GitHub for duplicate or related PRs and linked them above - [x] I have either (a) linked existing issues with `Fixes: #` / `Closes #` / `Refs #` OR (b) described the issue in-PR following the relevant issue template - [x] I have not referenced internal/instance-local Paperclip issues or links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip` URLs) - [x] My branch name describes the change (e.g. `docs/...`, `fix/...`) and contains no internal Paperclip ticket id or instance-derived details - [x] I have run tests locally and they pass - [x] I have added or updated tests where applicable - [x] I have updated relevant documentation to reflect my changes - [x] I have considered and documented any risks above - [ ] All Paperclip CI gates are green - [ ] Greptile is 5/5 with no open P2s, recommendations, or follow-ups - [x] I will address all Greptile and reviewer comments before requesting merge 🤖 Generated with [Claude Code](https://claude.com/claude-code) --------- Co-authored-by: Claude Opus 5.5 <noreply@anthropic.com> |
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|
DottaandClaude Opus 5.5
|
b184e40108 |
perf(ui): serve every project list from one includeArchived read (#20395)
## Thinking Path
> - Paperclip is the open source app people use to manage AI agents for
work
> - The board UI reads the company project list in many places: the
sidebar, starred projects, the command palette, the new-task dialog, and
archive-aware pages such as the Mine inbox
> - Active-only consumers read `GET /projects`, and archive-aware ones
read `GET /projects?includeArchived=true`, under two React Query keys
> - A Mine load therefore fetched the same large payload twice (580–590
KB each on our dev instance)
> - The two responses differ only by archived rows; the server's active
list is exactly the rows where `archivedAt` is null
> - This pull request makes every consumer share the
`includeArchived=true` query, and active-only consumers filter it with
`select`
> - The benefit is one project read per page instead of two
## Linked Issues or Issue Description
**What existing behavior does this improve?**
Duplicate project list reads on page load.
**Subsystem affected**
Board UI project queries (`ui/src/lib/company-projects-query.ts` and its
consumers).
**Current behavior**
A cold Mine load sends both `/companies/:id/projects` (sidebar) and
`/companies/:id/projects?includeArchived=true` (inbox).
**Proposed behavior**
One `includeArchived=true` read serves both. Active-only consumers apply
`selectActiveProjects`.
**Reason and benefit**
The project list is one of the largest shell payloads. Reading it once
saves a large response on every page that has both kinds of consumer.
## What Changed
- New `companyProjectsQuery(companyId, { includeArchived? })` in
`ui/src/lib/company-projects-query.ts`. It always uses the
`includeArchived: true` key and fetch. For active-only use it adds a
stable, module-level `select` that keeps rows without `archivedAt`.
- 22 files that read the active list now spread
`companyProjectsQuery(...)`, and so do the plugin SDK project picker and
16 archive-aware pages that wrote the shared key and fetcher inline.
Their `enabled` and other options are unchanged. `OnboardingWizard`'s
one imperative read is unchanged. `pages/Inbox.tsx` already reads the
same key and fetcher, so it shares the entry without an edit.
- Invalidation: project mutations and live events invalidate
`queryKeys.projects.all(companyId)`, which matches the shared key. The
onboarding wizard invalidated the old active-only key; it now
invalidates `projects.all`.
- Tests: new `company-projects-query.test.tsx` (one request for both
consumers, correct filtering, and one refetch after `projects.all`
invalidation). Three existing tests (`CommandPalette`, `CompanyExport`,
`GitHubBotManagement`) now seed or expect the shared key.
- New browser check
`tests/perf/collections/shared-project-list.spec.ts`: after the Mine
inbox read completes, the page has sent no active-only project request.
## Verification
- `pnpm verify` passes.
- `ui`: the consumer suites (`CoordinatorSidebar`, `SidebarProjects`,
`SidebarStarredProjects`, `CommandPalette`, `NewIssueDialog`,
`AgentWorkPanels`, `CoordinatorNeedsYou`, `IssueDetail`,
`ProjectDetail`, `Projects`, `CompanyExport`, `ChatExecutionDefaults`,
`GatewaysList`, `Search`, `IssueProperties`, `persisted-query-cache`)
pass.
- Browser check:
`PAPERCLIP_COLLECTION_PERF_BASE_URL=http://127.0.0.1:<port> pnpm exec
playwright test --config tests/perf/collections/playwright.config.ts
shared-project-list.spec.ts`. It passes on this branch and fails on
`master`.
## Risks
- A page that needs only active projects now downloads archived rows
too. For most companies that is a small difference; the duplicate read
it removes is a full copy.
- The server does not order either list, and consumers sort for display,
so filtering on the client keeps behavior.
## Model Used
- Claude Opus 5.5 (`claude-opus-5-5`), Anthropic, via Claude Code with
tool use (shell, file edits, browser). 1M-token context window. Extended
thinking was off.
## Checklist
- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have searched GitHub for duplicate or related PRs and linked
them above
- [x] I have either (a) linked existing issues with `Fixes: #` / `Closes
#` / `Refs #` OR (b) described the issue in-PR following the relevant
issue template
- [x] I have not referenced internal/instance-local Paperclip issues or
links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip`
URLs)
- [x] My branch name describes the change (e.g. `docs/...`, `fix/...`)
and contains no internal Paperclip ticket id or instance-derived details
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [ ] All Paperclip CI gates are green
- [ ] Greptile is 5/5 with no open P2s, recommendations, or follow-ups
- [x] I will address all Greptile and reviewer comments before
requesting merge
🤖 Generated with [Claude Code](https://claude.com/claude-code)
---------
Co-authored-by: Claude Opus 5.5 <noreply@anthropic.com>
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DottaandClaude Opus 5.5
|
c7eb35809e |
perf(ui): read skills and routines only when an editor mounts (#20392)
## Thinking Path > - Paperclip is the open source app people use to manage AI agents for work > - The board UI wraps every page in an `EditorAutocompleteProvider` that supplies slash commands to Markdown editors > - The provider read the full company skills and routines lists as soon as a company was selected, on every page > - The Mine inbox has no editor, but it still paid for both reads: 259–284 KB for skills and 225–333 KB for routines on our dev and staging instances, with skills taking 8.5–13.7 s on a saturated staging server > - Those reads compete with the inbox rows for the same server > - This pull request starts the two reads only when the first Markdown editor mounts > - The benefit is two fewer large reads on every page without an editor, and no change for pages that have one ## Linked Issues or Issue Description **What existing behavior does this improve?** The requests that every board UI page sends on load. **Subsystem affected** Board UI context (`ui/src/context/EditorAutocompleteContext.tsx`). **Current behavior** A cold load of `/:prefix/issues?view=mine` sends `GET /companies/:id/skills` and `GET /companies/:id/routines` although nothing on the page renders them. **Proposed behavior** The provider keeps both queries disabled until a component calls `useEditorAutocomplete()`. `MarkdownEditor` is the only caller, so the reads start when an editor mounts: a task composer, the new-task dialog when it opens, a comment box. **Reason and benefit** Each page without an editor saves two large reads. Pages with an editor read the same data at mount, before a user can type `/`. ## What Changed - `EditorAutocompleteProvider` holds a `requested` flag. Both queries are `enabled` only after it is set. - `useEditorAutocomplete()` sets the flag in an effect on first use. The flag stays set, so the lists stay current through the existing live-update invalidations for skills and routines. - New unit test `EditorAutocompleteContext.test.tsx`: no reads without an editor; one read of each list when two editors mount. - New browser check `tests/perf/collections/shell-editor-reads.spec.ts`: a Mine load sends no `skills` or `routines` request. ## Verification - `pnpm verify` passes. - `ui`: `npx vitest run src/context/EditorAutocompleteContext.test.tsx src/components/task-chat/TaskChatComposer.test.tsx` passes. - Browser check against a disposable local instance: `PAPERCLIP_COLLECTION_PERF_BASE_URL=http://127.0.0.1:<port> pnpm exec playwright test --config tests/perf/collections/playwright.config.ts shell-editor-reads.spec.ts`. It passes on this branch and fails on `master`. - Manual: on a local instance the Mine load dropped from 34 to 32 API requests. Opening a task shows the composer; `/` lists skills and routines as before. ## Risks - Low risk. On the first editor mount the slash menu is empty until the two reads return. On `master` the same reads ran at app start, so a user who typed `/` within the first moments of a page with an editor saw the same gap. - `attention/summary` is not changed. The navigation's "Needs you" count renders it on the Mine page. ## Model Used - Claude Opus 5.5 (`claude-opus-5-5`), Anthropic, via Claude Code with tool use (shell, file edits, browser). 1M-token context window. Extended thinking was off. ## Checklist - [x] I have included a thinking path that traces from project context to this change - [x] I have specified the model used (with version and capability details) - [x] I have checked ROADMAP.md and confirmed this PR does not duplicate planned core work - [x] I have searched GitHub for duplicate or related PRs and linked them above - [x] I have either (a) linked existing issues with `Fixes: #` / `Closes #` / `Refs #` OR (b) described the issue in-PR following the relevant issue template - [x] I have not referenced internal/instance-local Paperclip issues or links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip` URLs) - [x] My branch name describes the change (e.g. `docs/...`, `fix/...`) and contains no internal Paperclip ticket id or instance-derived details - [x] I have run tests locally and they pass - [x] I have added or updated tests where applicable - [x] I have updated relevant documentation to reflect my changes - [x] I have considered and documented any risks above - [ ] All Paperclip CI gates are green - [ ] Greptile is 5/5 with no open P2s, recommendations, or follow-ups - [x] I will address all Greptile and reviewer comments before requesting merge 🤖 Generated with [Claude Code](https://claude.com/claude-code) --------- Co-authored-by: Claude Opus 5.5 <noreply@anthropic.com> |
||
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DottaandClaude Opus 5.5
|
7e93ccb4b3 |
perf: fetch recent task summaries in one request (#20389)
## Thinking Path > - Paperclip is the open source app people use to manage AI agents for work > - The board UI sidebar shows the person's recent tasks on every page, including the Mine inbox > - The sidebar refreshes those rows through `GET /companies/:id/issues/summaries`, which accepted at most five IDs > - `useRecentTasks` sent the chunks one after another, so a 25-task history cost five sequential requests > - On staging each request took 3–6 s, so the recent-task rows settled about 20 s after load and every request competed with the inbox rows > - This pull request raises the per-request cap to 50 and fetches any remaining chunks in parallel > - The benefit is one summaries request for a typical history instead of a serial chain ## Linked Issues or Issue Description **What existing behavior does this improve?** The refresh of the sidebar's recent tasks on page load. **Subsystem affected** Board UI (`ui/src/hooks/useRecentTasks.ts`) and the `/issues/summaries` route bound (`packages/shared`, `server/src/routes/issues.ts`). **Current behavior** A history of N recent tasks sends ceil(N/5) summaries requests in series. Measured on staging on 2026-11-09 for a cold Mine load: five requests of five IDs, started at 1.0 s, 4.3 s, 8.1 s, 12.3 s and 18.4 s, each taking 3.3–6.1 s. **Proposed behavior** Up to 50 recent tasks are one request. Longer histories send their chunks at the same time. **Reason and benefit** The staging server is saturated, so each extra serial round trip delays the sidebar and the inbox rows. One request removes four round trips from a typical load. ## What Changed - `ISSUE_SUMMARIES_MAX_IDS` is now 50 (was 5). The shared validator, the route's 400 message, the service guard and the OpenAPI description use the new bound. - `useRecentTasks` builds all chunks first and fetches them at most three at a time (`RECENT_TASK_SUMMARY_CONCURRENCY`). The recent list has no size cap, so this keeps a long history from becoming a burst. The cache key, omission handling and pruning are unchanged. A failed chunk still fails the batch, so nothing is pruned on a partial failure. - Tests: the route test accepts exactly `MAX` IDs and rejects `MAX + 1`; a hook test checks that at most three chunks are in flight; the API test uses the constant; `useRecentTasks` tests cover a 25-task history in one request and a 103-task history with three chunks in flight together, with and without a failed chunk. - New browser check `tests/perf/collections/recent-task-summaries.spec.ts`: a Mine load with a 12-task history sends summaries requests that each carry all 12 IDs, and the server answers 200 with all 12 tasks. ## Verification - `pnpm verify` (selected Vitest files) passes. - `server`: `npx vitest run src/__tests__/issue-summaries-routes.test.ts src/__tests__/issue-display-status.test.ts` passes (embedded PostgreSQL). - `ui`: `npx vitest run src/hooks/useRecentTasks.test.tsx src/api/issue-summaries.test.ts src/components/task-chat/TaskChatBlockerLinks.test.tsx src/components/CoordinatorSidebar.test.tsx src/components/SidebarRecentTasks.test.tsx` passes. - Browser check against a disposable local instance: `PAPERCLIP_COLLECTION_PERF_BASE_URL=http://127.0.0.1:<port> pnpm exec playwright test --config tests/perf/collections/playwright.config.ts recent-task-summaries.spec.ts`. It passes on this branch. With `master`'s hook and constant it fails: three requests of 5, 5 and 2 IDs. ## Risks - Low risk. The route still validates UUIDs, deduplicates, and applies the same read authorization per row. Blocker attention is computed with set-based queries, so 50 IDs is the same number of queries as 5. - During a rolling deploy, a new UI against an old server would get a 400 for a history above five tasks. The server serves the UI bundle, so both change together on a normal deploy. The sidebar keeps its stored snapshot when the refresh fails. ## Model Used - Claude Opus 5.5 (`claude-opus-5-5`), Anthropic, via Claude Code with tool use (shell, file edits, browser). 1M-token context window. Extended thinking was off. ## Checklist - [x] I have included a thinking path that traces from project context to this change - [x] I have specified the model used (with version and capability details) - [x] I have checked ROADMAP.md and confirmed this PR does not duplicate planned core work - [x] I have searched GitHub for duplicate or related PRs and linked them above - [x] I have either (a) linked existing issues with `Fixes: #` / `Closes #` / `Refs #` OR (b) described the issue in-PR following the relevant issue template - [x] I have not referenced internal/instance-local Paperclip issues or links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip` URLs) - [x] My branch name describes the change (e.g. `docs/...`, `fix/...`) and contains no internal Paperclip ticket id or instance-derived details - [x] I have run tests locally and they pass - [x] I have added or updated tests where applicable - [x] I have updated relevant documentation to reflect my changes - [x] I have considered and documented any risks above - [ ] All Paperclip CI gates are green - [ ] Greptile is 5/5 with no open P2s, recommendations, or follow-ups - [x] I will address all Greptile and reviewer comments before requesting merge 🤖 Generated with [Claude Code](https://claude.com/claude-code) --------- Co-authored-by: Claude Opus 5.5 <noreply@anthropic.com> |
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DottaandPaperclip
|
2f47d0fadb |
perf(workspace): run portable archives in bounded CPU workers (#20404)
## Thinking Path
> - Paperclip preserves agent work when its control plane changes.
> - Workspace imports capture and verify portable filesystem archives.
> - The archive function uses asynchronous I/O but hashes and handles
manifests on the caller's JavaScript thread.
> - Concurrent imports therefore share one CPU execution context for
that work.
> - This pull request runs the same archive function in bounded native
Node workers.
> - The parent keeps all database, storage, source locks and publication
decisions.
## Linked Issues or Issue Description
**What happened?**
Concurrent administrative workspace imports can spend many minutes
capturing archives while the owning Node process uses about one CPU
core. Promise concurrency does not move hashing and manifest work off
that process's JavaScript thread.
**Expected behavior**
Independent archive calls use separate CPU execution contexts. At most
eight archive workers run in one process. Cancellation must wait for
file cleanup and actual worker exit before the caller releases its
locks.
**Steps to reproduce**
Run several workspace captures in one process. The existing wrappers
call the same archive function on the parent thread. The regression
holds eight real worker threads at a CPU barrier while the parent
remains responsive, then cancels a queued ninth call without spawning
it.
**Deployment mode**
All server callers of the portable capture and restore wrappers. Related
import work: https://github.com/paperclipai/paperclip/pull/20311 and
https://github.com/paperclipai/paperclip/pull/20394.
## What Changed
- Run the existing self-contained archive function in native workers.
Its algorithm and format stay byte-identical.
- Limit active workers to eight per process, with a 1 GiB old-generation
heap limit each. Workers stop when their owned call finishes.
- Forward cancellation to the worker's AbortController. Wait for actual
exit before returning, throwing or releasing an active slot. Cancel
queued calls before they spawn.
- Own capture scratch in a private parent-created worker temporary root.
Remove it after actual exit, including abnormal exit.
- Keep direct archive algorithm fault tests on the canonical
implementation. Add real-worker byte, manifest, restore, CPU barrier and
cancellation tests.
## Verification
- Four real-worker regressions passed: forced-exit capture scratch
cleanup; exact capture bytes/manifest and restored files/modes/links;
eight CPU barriers plus queued abort; abort cleanup joined through
actual worker exit.
- Canonical workspaceArchive declaration/body hash is unchanged from the
base:
`d6cffeab112b817fab8f65a3c0d8ecdc8d23589d37bf44ae30fe9e53213d54f4`.
- The combined archive run passed 114 cases. Three Unix-socket cases
failed because the sandbox denied listen with EPERM; a focused retry
with socket permission passed all three. The initial separate worker run
passed all three cases; the new head passed all four, including
forced-exit cleanup. All server layered typechecks and module boundary
checks passed.
- The initial
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Nicky LeachandClaude Opus 5.5
|
5858cef8f9 |
perf(runner): poll the provider right after an ACK releases it (#20374)
## Thinking Path > - Paperclip is the open source app people use to manage AI agents for work > - The Runner (`paperclip-runnerd`) sends provider events to the controller over one authenticated socket > - Its main loop reads one control frame, then polls the provider only after a read finds no frame > - After the controller ACKs the last sent event, the next read waits the full 250 ms `RUNTIME_READ_TIMEOUT` before the Runner polls the provider again > - A Codex turn start needs one or two such rounds before the Runner reads `turn/started`, so every Codex turn waits 250 ms or 500 ms for no reason > - This pull request reads only the frames that are already queued after a consumed control frame, and then polls at once, when this connection produced the unacknowledged output > - The benefit is 250 ms less time to `turn/started` for each ACK round, and faster event delivery after each ACK ## Linked Issues or Issue Description This is an enhancement. The fields follow `.github/ISSUE_TEMPLATE/enhancement.yml`. **What existing behavior does this improve?** Codex turns wait for the Runner read timeout before the Runner sends `turn/started`. **Subsystem affected** The Runner (`paperclip-runnerd`) durable loop in `packages/paperclip-runner/runner/crates/runner-core/src/durable/`, for the local Codex provider. **Current behavior** On a hosted test deployment (48 h, 114 Codex turns), `runner.transport.started_event` for Codex has two modes: | Codex turn | n | `started_event` p50 | | --- | --- | --- | | no provider cold start in the trace | 57 | 468 ms (all < 700 ms) | | provider cold start in the trace | 57 | 918 ms (51 of 57 ≥ 700 ms) | For Claude (ACPX) turns, the p50 is 90 ms. ACPX returns `turn.started` with the command result. Codex reads `turn/started` from the provider in a later poll. **Proposed behavior** The Runner polls the provider as soon as the controller ACK releases the poll gate. The time to `turn/started` then follows the controller round trip, not the read timeout. **Reason and benefit** - Real Codex (`codex app-server` 0.157, local) sends `turn/started` 2–16 ms after its `turn/start` response. The provider is not the cause. - `runner.transport.started_event` starts when the `turn.start` command result arrives. It ends when the controller commits `turn.started`. In this time the Runner sends `turn.accepted`, waits for its ACK, waits 250 ms, polls, and sends `turn.started`. - On the first turn after a provider launch, the first poll returns only the launch diagnostic that the executor retained. A second ACK round and a second 250 ms wait come before the poll that reads `turn/started`. This is the difference between the two modes above (about 450 ms: 250 ms wait and one event round). - So 250 ms (warm turn) or 500 ms (first turn) of each Codex `started_event` is the read timeout. The rest is one or two controller event rounds (about 200 ms each on that deployment), less than 20 ms of Codex time, and the 10 ms pump interval of the TypeScript transport. - The expected benefit is 250 ms less per warm Codex turn start and 500 ms less for the first turn after a provider launch, plus faster Codex event delivery after each ACK. **Breaking changes** None. No protocol, schema, or controller change. ## What Changed - `AuthenticatedTransport::receive_queued_json` reads with a 1 ms timeout and then restores `RUNTIME_READ_TIMEOUT`. - New `CommandExecutor::provider_poll_is_live` hook (default `false`). The local Codex executor returns `true` only when it owns a running provider with no open startup attempt, so a poll cannot restore or launch a provider. The native executor forwards it for the local Codex facade only. - In the steady-state loop, after a consumed control frame, the Runner uses `receive_queued_json` when it has sent output that this connection produced (a command or a provider poll) and the executor reports a live provider. If no frame is queued, it polls the provider at once. - When a provider poll returns no output, or when no frame was consumed, the Runner uses the 250 ms read as before. A 1 ms read follows only a consumed frame, so an idle loop does not spin. - The replay boundary is the highest source sequence before the welcome's pending commands run. A fresh command delivered in the welcome counts as this connection's output. Replayed commands only resend their stored results. - Replayed output from an earlier connection or process, ACPX, and the other providers keep the 250 ms read. The controller can still send its next command before a poll restores a provider. (Without the live-provider gate, six ACPX source-recovery tests in `runnerd-acpx-source-reconciliation.test.ts` failed: the fast poll restored the ACPX sidecar before the next recovery command.) - Control frames that are already queued behind the ACK are still read and executed before the provider poll. The ACK gate in `poll_executor_events_after_controller_ack` is unchanged. ## Verification - `cargo test -p paperclip-runner-core --lib durable::` (121 passed). Five new tests in `src/durable/tests/ack_release_poll.rs`, included by the transport test module like `hosted_retention.rs`: - `acknowledged_output_polls_the_provider_without_waiting_out_the_read_timeout`: the provider poll follows the ACK read in less than `RUNTIME_READ_TIMEOUT`. Without the change it fails (the poll waited 280–356 ms). - `control_queued_behind_an_ack_runs_before_the_next_provider_poll`: a command sent in the same write as the ACK executes before the provider poll. - `welcome_command_output_polls_the_provider_without_waiting_out_the_read_timeout`: the output of a fresh command in the welcome also releases the poll at once. With the replay boundary taken after the welcome commands, it fails. - `replayed_output_ack_keeps_the_read_timeout_before_the_provider_poll`: after a reconnect, a command sent 50 ms after the ACK of replayed output executes before the provider poll. Without the replay condition it fails. - `restorable_provider_ack_keeps_the_read_timeout_before_the_provider_poll`: when the executor does not report a live provider, a command sent 50 ms after the ACK executes before the provider poll. - `npx vitest run src/live/runnerd-` in `packages/paperclip-runner` with the new debug `paperclip-runnerd`: run with `--no-file-parallelism`. Before the welcome-boundary fix: 576 passed, 3 skipped. After it: 575 passed, 3 skipped, and 1 failure once (`stops a lost runnerd's provider and escaped tool job from its lineage journal (journal=true)`, a SIGKILL timing test) while `cargo test` ran at the same time. `runnerd-codex-transport.test.ts` then passed 293 of 293 three times with this build, and three times with the base build. - Local before and after measurement with the real Runner, the TypeScript transport, and the fake Codex app-server (8 turns, 2 runs each, debug build): | span | before p50 | after p50 | | --- | --- | --- | | `runner.transport.started_event` | 377 ms (first turn 682–695 ms) | 119–122 ms (first turn 117–119 ms) | | `runner.transport.turn_start` | 462–471 ms (first turn 775–780 ms) | 204–212 ms (first turn 247–251 ms) | - The saving on the hosted deployment is not measured. From the analysis above, the expected saving is about 250 ms for a warm Codex turn and about 500 ms for the first turn after a provider launch. ## Risks - Only local Codex gets the fast path. ACPX streaming keeps the old 250 ms wait after each ACK. A later change can opt ACPX in when its poll can prove that it does not restore the sidecar. - More provider polls during Codex streaming: a poll can now follow each ACK at once instead of after 250 ms. Batches can become smaller, so the provider state save for each batch can happen more often. Each event already has its own durable save. - A command that the controller sends more than 1 ms after its ACK can now arrive after a provider poll. This was already possible after 250 ms. The change applies only when this connection produced the output, so the provider is already active. - If the Runner cannot restore the 250 ms read timeout, it treats the socket as failed and reconnects. It does not continue with a 1 ms timeout. - No protocol, schema, or controller change. > For core feature work, check [`ROADMAP.md`](ROADMAP.md) first and discuss it in `#dev` before opening the PR. Feature PRs that overlap with planned core work may need to be redirected — check the roadmap first. See `CONTRIBUTING.md`. ## Model Used - Claude Opus 5.5 (`claude-opus-5-5`) in Claude Code, with tool use (shell, code search, Honeycomb queries) and extended reasoning. ## Checklist - [x] I have included a thinking path that traces from project context to this change - [x] I have specified the model used (with version and capability details) - [x] I have checked ROADMAP.md and confirmed this PR does not duplicate planned core work - [x] I have searched GitHub for duplicate or related PRs and linked them above - [x] I have either (a) linked existing issues with `Fixes: #` / `Closes #` / `Refs #` OR (b) described the issue in-PR following the relevant issue template - [x] I have not referenced internal/instance-local Paperclip issues or links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip` URLs) - [x] My branch name describes the change (e.g. `docs/...`, `fix/...`) and contains no internal Paperclip ticket id or instance-derived details - [x] I have run tests locally and they pass - [x] I have added or updated tests where applicable - [ ] I have updated relevant documentation to reflect my changes - [x] I have considered and documented any risks above - [x] All Paperclip CI gates are green - [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups - [x] I will address all Greptile and reviewer comments before requesting merge 🤖 Generated with [Claude Code](https://claude.com/claude-code) --------- Co-authored-by: Claude Opus 5.5 <noreply@anthropic.com> |
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DottaandClaude Opus 5.5
|
c985541a57 |
perf(db): index retry-exhaustion receipts for the attention scan (#20386)
## Thinking Path > - Paperclip is the open source app people use to manage AI agents for work > - The attention feed shows runs that failed after automatic retries stopped > - To find these runs, the feed reads every `heartbeat_run_events` row of the company and filters the rows by a message prefix > - Run output makes this table very large, so each feed request does a large scan > - On a hosted test database, this one statement used the most total database time: 923 calls at a mean of 5 s (4,709 s in total) > - Request authentication waits behind this background work, so all users feel the load > - This pull request adds a small partial index that holds only the retry-exhaustion receipts > - The benefit is that the same query reads a few index entries instead of all company events ## Linked Issues or Issue Description **What existing behavior does this improve?** The attention feed query that finds retry-exhausted runs (`listAttentionExhaustedRuns`). **Subsystem affected** Server attention feed and the `heartbeat_run_events` table schema. **Current behavior** The query reads all company rows in `heartbeat_run_events`, filters them by `event_type = 'lifecycle'` and the `Bounded retry exhausted` message prefix, and then joins the few matches to failed or timed-out runs. The cost grows with all run output. It does not grow with the number of exhausted runs. **Proposed behavior** A partial index holds only the matching receipts. The query plan reads the index and joins a few rows. The query text and the result do not change. **Reason and benefit** The scan was the most expensive statement by total time on a loaded hosted database. A local reproduction shows a 54x faster query and about 116x fewer buffer reads. **Breaking changes** None. The API, the feed rows, and their order do not change. ## What Changed - Add the partial index `heartbeat_run_events_retry_exhausted_idx` on `(company_id, run_id, id DESC)`. The index covers only rows where `event_type = 'lifecycle'` and `message like 'Bounded retry exhausted%'`. - Add migration `0454`. It uses `CREATE INDEX CONCURRENTLY IF NOT EXISTS`. The migration runner runs it as a top-level statement, the same as migrations 0432, 0436 and 0450. - Add a regression test. It pins the row order (newest run first, then the newest receipt on a tie) and the latest receipt per run. It also checks that the query plan can use the new index. If the query predicate changes so that the index no longer applies, the test fails. - Add `scripts/benchmark-exhausted-run-attention.ts`. It measures the same query with and without the index, and the time to build the index. - Document the index in `doc/DATABASE.md`. ## Verification Cause and thesis. The scan cost comes from reading all company events, not from the few exhausted runs. Thesis: an index that holds only the receipts makes the query cost depend on the number of receipts, and keeps the result identical. The benchmark below confirms the thesis. Rejected alternative without a migration. I first tried a LATERAL lookup that starts from the failed and timed-out runs. On the same fixture it was about 2x slower (median 379 ms against 194 ms). It reads the full event history of each failed run with random I/O, and that costs more than one sequential scan. Local SQL benchmark (the SQL that the service generates; same SQL with and without the index): ```sh pnpm --filter @paperclipai/server exec tsx ../scripts/benchmark-exhausted-run-attention.ts --runs=30000 --events-per-run=100 --samples=9 ``` Fixture (synthetic): one company with 30,000 runs (3,819 failed or timed out) and 3.0 M events, plus a decoy company with 0.5 M events. The table is 1.4 GB. About 5% of events are `lifecycle` events. Events of 20 concurrent runs are interleaved. 1 in 23 runs has a receipt, some runs have two receipts, and output decoys contain the prefix. Two agents are terminated. Embedded PostgreSQL 18.1 on an Apple laptop. The hosted database is Neon with different compute, so the absolute times are local SQL measurements only. The script runs two cycles (without index, then with index; then with index, then without index) to expose cache bias. Each measurement has 2 warmups and 9 samples. | Query | Without index | With index | Samples and spread | Output check | | --- | --- | --- | --- | --- | | `listAttentionExhaustedRuns` | median 157 ms (96–1,271 ms) | median 3.3 ms (2.2–5.7 ms) | 18 each | 133 rows, positional rows equal in all 4 measurements | | Buffers (EXPLAIN ANALYZE) | 127,743 blocks | 5,580 blocks | | plan uses the new index (asserted) | Speedup: 48x (median), on head `ae6037b2a0` (the same SQL and index as the final head). The machine was under heavy load from other work, so the spread without the index is wide. An earlier run on the first head gave 248 ms against 4.6 ms (54x). Index build (`CREATE INDEX CONCURRENTLY` from the migration file): 1.7 s and 2.5 s for the 1.4 GB table. Index size: 152 KiB. Review fix: the query now writes `event_type = 'lifecycle'` as a SQL literal, not a bound parameter. With prepared statements, PostgreSQL can reuse a generic plan. A generic plan cannot prove that a bound parameter matches the index predicate, so it would not use the index. Tests: - `cd server && npx vitest run src/__tests__/attention-service.test.ts`: 44 passed. The new test checks a fresh plan and a forced generic plan (`plan_cache_mode = force_generic_plan` with `PREPARE`). It failed with the bound `event_type` parameter and with a changed message prefix (confirmed red), and it passes with the fix. Locally, the file's `afterAll` database cleanup hook timed out on a heavily loaded machine (load average about 28). The timeout also occurs when the new test is excluded. - `pnpm --filter @paperclipai/db check:migrations`: passed. - `pnpm --filter @paperclipai/db typecheck` and `pnpm --filter @paperclipai/server typecheck`: passed. - `pnpm verify`: see the CI results for this head. ## Risks - Migration time. A concurrent index build reads the full `heartbeat_run_events` table and does not block writes. Locally, the build took 1.2–2.5 s for 1.4 GB. The time grows linearly with the table size. I did not time the build on a production-size clone. On a database with a 5 s full company scan, I estimate the build at tens of seconds, which is in the 1–2 minute budget. This estimate is not proven. - If the build stops, PostgreSQL can leave an invalid index. The migration runner repairs invalid concurrent indexes when it runs again, and `IF NOT EXISTS` makes a rerun safe. - The index predicate must stay textually equal to the query predicate. If someone changes the message prefix or binds a predicate value as a parameter, the planner cannot use the index. The new test catches both cases, for fresh and generic plans. - Each new receipt writes one more small index entry. Receipts are rare, so the write cost is very small. - The hosted improvement is not verified until deployment. After deployment, compare a new query-statistics window for this statement. ## Model Used - Claude Opus 5.5 (`claude-opus-5-5`), Anthropic, used through Claude Code with tool use (shell, file edits, local PostgreSQL). Standard context window and reasoning mode. ## Checklist - [x] I have included a thinking path that traces from project context to this change - [x] I have specified the model used (with version and capability details) - [x] I have checked ROADMAP.md and confirmed this PR does not duplicate planned core work - [x] I have searched GitHub for duplicate or related PRs and linked them above - [x] I have either (a) linked existing issues with `Fixes: #` / `Closes #` / `Refs #` OR (b) described the issue in-PR following the relevant issue template - [x] I have not referenced internal/instance-local Paperclip issues or links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip` URLs) - [x] My branch name describes the change (e.g. `docs/...`, `fix/...`) and contains no internal Paperclip ticket id or instance-derived details - [x] I have run tests locally and they pass - [x] I have added or updated tests where applicable - [x] I have updated relevant documentation to reflect my changes - [x] I have considered and documented any risks above - [ ] All Paperclip CI gates are green - [ ] Greptile is 5/5 with no open P2s, recommendations, or follow-ups - [x] I will address all Greptile and reviewer comments before requesting merge 🤖 Generated with [Claude Code](https://claude.com/claude-code) --------- Co-authored-by: Claude Opus 5.5 <noreply@anthropic.com> |
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DottaandClaude Opus 5.5
|
c57cd1bdb9 |
perf(server): read plugin lifecycle inbox heads in one pass (#20405)
## Thinking Path > - Paperclip is the open source app people use to manage AI agents for work > - Plugins get agent, project and agent runtime changes from the `resource_lifecycle_events` journal. Each plugin acknowledges events one resource at a time. > - The inbox page query checked each unacknowledged event against all older events of the same resource. Each check walked the acknowledged history of that resource. > - Agent runtime streams get a new event for each configuration change, so one resource can have thousands of acknowledged events. The cost grew as pending events times acknowledged history. > - On a hosted instance, three copies of this read ran for 601 seconds each, and one earlier copy ran for 19 minutes. The delivery worker runs it again after each acknowledgment. > - This pull request selects the head of each resource in one pass and keeps the same result. > - The benefit is that the page read is linear in the company journal size. In local tests it is 250x to 660x faster, and the result rows are equal. ## Linked Issues or Issue Description **What happened?** The plugin lifecycle inbox page query (`select "id", "company_id", "resource_type", "resource_id", "action", "created_at" from "resource_lifecycle_events" where ...`) ran for 601 seconds on a hosted database. Three copies were active at the same time. **Expected behavior** A lifecycle page read must stay fast when a resource has a long acknowledged history and a pending backlog. **Steps to reproduce** 1. Give a company 40 agents with 1,500 `agent_runtime` events each. 2. Acknowledge the first 1,200 events of each agent for one plugin. 3. Call `pluginLifecycleInbox(db, pluginId).list(companyId, 100, undefined, ["agent", "project", "agent_runtime"])`. 4. The read takes about 10 seconds for 60,000 events of that company. At 200,000 events it takes about 6 minutes. **Paperclip version or commit** `02bfe71a6b` (master). **Deployment mode** Hosted (PostgreSQL). Local repro uses embedded PostgreSQL 18. ## What Changed - `server/src/services/plugin-lifecycle-inbox.ts`: `list` now selects one head per resource with `DISTINCT ON (resource_type, resource_id)`. The head is the unacknowledged creation, else the oldest unacknowledged event. Then the query applies `afterId`, id order and the limit. This is the same set that the old `firstForResource` predicate admits. `acknowledge` keeps the old predicate for its single-event check. - `plugin-lifecycle-inbox.ts`: new `hasPending(companyId, types)`. It returns whether any unacknowledged event exists. Each resource with an unacknowledged event has a head, so this gives the same answer as `list(companyId, 1).length > 0`. - `server/src/services/plugin-lifecycle-delivery.ts`: the idle-sleep journal check uses `hasPending`. This keeps its early exit. A one-row `list` page would read the full journal. - `server/src/__tests__/resource-lifecycle-events.test.ts`: new database test for heads across acknowledged history, a creation recorded after transitions, acknowledged gaps, shared ids across resource types, per-plugin progress, another company, `afterId` pages, limits, `hasPending`, and the next head after an acknowledgment. The test also passes on the old query, so it locks the contract. - `scripts/benchmark-plugin-lifecycle-inbox.ts`: new benchmark. It loads the baseline service from git, runs both on the same fixture, alternates order, asserts equal rows, and prints plans. - `doc/DATABASE.md`: describes the read cost and the benchmark command. - No schema change, index or migration. ## Verification Thesis: the old read cost is (unacknowledged candidates) x (acknowledged older events per resource), because each candidate walks the acknowledged prefix of its resource. One pass that keeps the per-resource head removes that product and returns equal rows. Baseline plan at 220,080 events: 40,020 candidates each walked about 3,999 older rows, which gave 160,039,980 acknowledgment probes and 562,140,833 buffer hits. The treatment plan reads the journal once with a hash anti join and sorts the 40,020 unacknowledged rows (3,925 buffer hits). Local SQL timings (embedded PostgreSQL 18, Apple Silicon; event counts include a 20,000-event second company, synthetic data, warm cache, one warmup, order alternates): | Fixture (events / acknowledged) | Case | Before median | After median | Samples (after) | Speedup | | --- | --- | --- | --- | --- | --- | | 40,060 / 16,040 | page of 100, all types | 3,263 ms | 13.1 ms | 3 (12.0-14.1) | 250x | | 80,080 / 48,060 | page of 100, all types | 10,137 ms | 23.9 ms | 5 (22.7-32.6) | 424x | | 220,080 / 160,060 | page of 100, all types | 355,718 ms | 538 ms | 3 (72-785) | 662x | | 1,020,080 / 960,060 | page of 100, all types | not run (est. > 30 min) | 1,682 ms | 7 (1,203-2,384) | - | | 80,080 / 48,060 | page of 100, agent and project only | 1.5 ms | 1.6 ms | 5 | neutral | | 80,080 / 48,060 | idle-sleep check | 14.5 ms | 13.8 ms | 5 | neutral | | 1,020,080 / 960,060 | idle-sleep check | not run | 406 ms | 7 | - | - Result rows are equal (`assert.deepEqual` on all mapped rows, in order) for each case where both versions ran. - The agent runtime revision read in `plugin-agent-runtime-state.ts` and `agent-file-store.ts` (`select id ... order by id desc limit 1`) uses a backward index-only scan and reads 5 buffers at 1M events. It is not changed. Commands: ```sh pnpm --filter @paperclipai/server exec tsx ../scripts/benchmark-plugin-lifecycle-inbox.ts --baseline-ref=02bfe71a6b --agents=40 --per-agent=1500 --acked=1200 --samples=5 pnpm --filter @paperclipai/server exec tsx ../scripts/benchmark-plugin-lifecycle-inbox.ts --baseline-ref=02bfe71a6b --agents=40 --per-agent=25000 --acked=24000 --samples=7 --treatment-only cd server && npx vitest run src/__tests__/resource-lifecycle-events.test.ts src/__tests__/plugin-lifecycle-delivery.test.ts src/__tests__/agent-runtime-hooks.test.ts ``` - `resource-lifecycle-events.test.ts`: 28 passed. `plugin-lifecycle-delivery.test.ts`: 40 passed (includes idle-sleep "none" and "present"). `agent-runtime-hooks.test.ts`: 22 passed. - `tsc --noEmit -p server`: pass. ## Risks - The page read is still linear in the company journal size, because acknowledgments are per plugin and the journal has no retention yet. At 1M events a page takes about 1.7 s locally. Each acknowledgment wakes another full pass. A per-plugin cursor or retention can remove this later. - The planner can choose a different plan on the hosted database. The local plans use a hash anti join and one sort. The hosted improvement is not yet measured. - `acknowledge` still checks one event against older events of its resource. That check is linear in that resource's history per call, as before. - Low behavior risk: the new test passes on both the old and new queries. ## Model Used - Claude Opus 5.5 (`claude-opus-5-5`), Anthropic, used through Claude Code with tool use (shell, file edits, local PostgreSQL). Extended reasoning on. ## Checklist - [x] I have included a thinking path that traces from project context to this change - [x] I have specified the model used (with version and capability details) - [x] I have checked ROADMAP.md and confirmed this PR does not duplicate planned core work - [x] I have searched GitHub for duplicate or related PRs and linked them above - [x] I have either (a) linked existing issues with `Fixes: #` / `Closes #` / `Refs #` OR (b) described the issue in-PR following the relevant issue template - [x] I have not referenced internal/instance-local Paperclip issues or links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip` URLs) - [x] My branch name describes the change (e.g. `docs/...`, `fix/...`) and contains no internal Paperclip ticket id or instance-derived details - [x] I have run tests locally and they pass - [x] I have added or updated tests where applicable - [x] I have updated relevant documentation to reflect my changes - [x] I have considered and documented any risks above - [ ] All Paperclip CI gates are green - [ ] Greptile is 5/5 with no open P2s, recommendations, or follow-ups - [x] I will address all Greptile and reviewer comments before requesting merge 🤖 Generated with [Claude Code](https://claude.com/claude-code) --------- Co-authored-by: Claude Opus 5.5 <noreply@anthropic.com> |
||
|
DottaandClaude Opus 5.5
|
17014cd7db |
perf(server): make run liveness backfill lookup issue-scoped (#20393)
## Thinking Path
> - Paperclip is the open source app people use to manage AI agents for
work
> - Each finished agent run gets a liveness classification. The task
page shows it, and recovery reads it.
> - Run finalization writes the classification. A backfill repairs runs
that do not have it, for example older runs or runs whose finalization
failed.
> - The task page runs read (`GET /issues/:id/runs`) starts this
backfill on each read, for each task.
> - The candidate lookup reads every unclassified finished run in the
company. For each row, it reads the run context and probes
`activity_log`. Rows of other tasks never match, so each read repeats
the same work.
> - On a hosted test instance, this lookup used approximately 1 s per
call, 2,636 calls, and 3,500 s in total.
> - This pull request makes the lookup read only the rows of the task,
and skips a task after a pass finds nothing left to repair.
> - The benefit is less database work per task page read. The
classification still gets written.
## Linked Issues or Issue Description
**What existing behavior does this improve?**
The run liveness backfill that the task runs read starts
(`scheduleRunLivenessBackfill` in `server/src/services/activity.ts`).
**Subsystem affected**
Server: activity service, task runs read, run liveness backfill.
**Current behavior**
Each task runs read runs this lookup:
```sql
select ... from heartbeat_runs
where company_id = $1 and liveness_state is null and status not in ('queued', 'running')
and (context_snapshot ->> 'issueId' = $2
or exists (select 1 from activity_log where company_id = $3 and entity_type = 'issue'
and entity_id = $4 and run_id = heartbeat_runs.id))
limit 20
```
PostgreSQL reads all unclassified finished runs of the company through
`heartbeat_runs_company_liveness_idx`. It then reads the context of each
row, which can be large, and probes `activity_log` for each row.
Unclassified runs of other tasks, and runs without a task, stay
unclassified, because no read of their own task repairs them. Thus the
cost grows with the company, not with the task. The lookup also runs
again on each read when the task has nothing to repair.
**Proposed behavior**
- The lookup reads only the runs of this task. One branch uses
`heartbeat_runs_company_ctx_issue_created_idx` (context `issueId`). The
other branch uses `activity_log_company_entity_created_idx` (issue
activity rows with a run id). The result keeps the same filter: same
company, liveness missing, status not `queued` or `running`, at most 20
rows.
- When a pass finds fewer than 20 rows, it has repaired all rows of the
task. The service then skips the task for 10 minutes. A full batch of 20
does not start the skip window, so the next read repairs the next batch.
**Reason and benefit**
The lookup is now proportional to the history of one task. Most reads
find nothing, and those reads now do no database work for 10 minutes.
**Breaking changes**
None. No migration, no API change, no new background work.
**Additional context**
The chat bootstrap read already skips the backfill
(`skipLivenessBackfill`). That option still works, and a test covers it.
## What Changed
- `server/src/services/run-liveness-backfill-query.ts`: new
`missingRunLivenessCandidatesQuery`. It replaces the `OR` and the
correlated `exists` with `id in (context branch union all activity
branch)`. Both branches are filtered by company and task.
- `server/src/services/activity.ts`: the backfill uses the new query and
returns the number of rows it found. `scheduleRunLivenessBackfill` keeps
a bounded in-memory map (at most 10,000 tasks, oldest entry is removed
first) of tasks with nothing left to repair. It skips these tasks for 10
minutes.
- `server/src/__tests__/activity-service.test.ts`: four new
real-database tests.
- The backfill repairs runs found by context and runs found only by
issue activity. It does not change a running run, an unclassified run of
another task, or a run of another company that names the same task id.
- After a pass leaves nothing to repair, more reads do not repair a new
unclassified run. After the skip window ends, the next read repairs it.
- A task with 25 unclassified runs (more than one batch) gets all of
them repaired over later reads.
- A read with `skipLivenessBackfill` does not repair. The next normal
read does.
- `scripts/benchmark-run-liveness-backfill.ts`: a local SQL benchmark
that compares the pre-fix query with the new query.
## Verification
Local SQL benchmark (embedded PostgreSQL 18.1, macOS, synthetic data):
```sh
cd server
pnpm exec tsx ../scripts/benchmark-run-liveness-backfill.ts --baseline-ref=02bfe71a6bbd7c5676cb7e72778b361c5bc72765
```
- Baseline: `02bfe71a6b` (pre-fix master). Treatment: `80fcfcf7f1`,
clean tree.
- Fixture assumptions (staging row counts were not available): one
company with 30,000 classified runs, 6,000 unclassified finished runs of
other tasks or of no task, each with an approximately 20 KiB hex
context, 400 other tasks, and 300,000 `activity_log` rows (half with a
run id). The target task has 40 classified runs, 200 activity rows, and
the missing rows of each case. Decoys: one `running` run of the task,
and one run in another company that names the task id. A small control
uses 500 classified and 50 unclassified runs.
- Each arm: 2 warm-up runs and 11 measured runs, in alternating order.
| Case | Candidates | Baseline median (min to max) | New median (min to
max) | Speedup | Shared buffers (baseline to new) |
| --- | --- | --- | --- | --- | --- |
| Task with nothing to repair | 0 | 37.2 ms (31.1 to 44.1) | 1.21 ms
(0.42 to 1.79) | 30.8x | 34,247 to 138 |
| Task with 3 missing | 3 | 37.8 ms (27.2 to 39.6) | 1.16 ms (0.77 to
2.05) | 32.6x | 34,265 to 148 |
| Task with 25 missing | 25 | 37.5 ms (34.6 to 69.8) | 1.63 ms (1.06 to
3.47) | 23.0x | 34,361 to 154 |
| Small control | 3 | 0.79 ms (0.70 to 1.06) | 0.70 ms (0.48 to 1.70) |
1.1x (neutral) | 314 to 18 |
The `EXPLAIN ANALYZE` execution time for the large cases goes from
approximately 35 ms to approximately 0.15 ms. These are local SQL
measurements. The hosted latency improvement is not yet measured.
The benchmark also checks result equality. For each case, it runs both
queries without a limit and compares every column of every row (as
sorted positional rows). It also checks that the limited batch of 20
comes from the baseline candidate set. All cases match.
Beyond the query, the skip window removes the lookup for most reads of a
task with nothing to repair.
Tests:
```sh
cd server
pnpm exec vitest run src/__tests__/activity-service.test.ts # 24 passed
pnpm exec vitest run src/__tests__/activity-routes.test.ts src/__tests__/task-cold-open.test.ts src/__tests__/liveness.test.ts
pnpm exec tsc --noEmit -p .
```
- The skip-window test fails on the pre-fix `activity.ts` (red), and
passes with this change (green).
- `pnpm verify` asks for broader coverage, because the change adds a
script. Required CI supplies that coverage.
## Risks
- A run that misses its classification after a pass finds nothing for
its task gets repaired up to 10 minutes later. Normal runs get their
classification at finalization, so only the repair path is late.
- The skip map is in memory for each server process. A restart clears
it. That only causes one more lookup for each task.
- The new query keeps the same rows, filter, and limit. The query has no
order, as before. Thus the 20 rows that a pass picks can differ when a
task has more than 20 candidates. Later reads repair the rest in both
versions.
- Low risk. No migration and no API change.
## Model Used
- Claude Opus 5.5 (`claude-opus-5-5`), Anthropic, with tool use and code
execution in Claude Code.
## Checklist
- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have searched GitHub for duplicate or related PRs and linked
them above
- [x] I have either (a) linked existing issues with `Fixes: #` / `Closes
#` / `Refs #` OR (b) described the issue in-PR following the relevant
issue template
- [x] I have not referenced internal/instance-local Paperclip issues or
links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip`
URLs)
- [x] My branch name describes the change (e.g. `docs/...`, `fix/...`)
and contains no internal Paperclip ticket id or instance-derived details
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [ ] All Paperclip CI gates are green
- [ ] Greptile is 5/5 with no open P2s, recommendations, or follow-ups
- [x] I will address all Greptile and reviewer comments before
requesting merge
🤖 Generated with [Claude Code](https://claude.com/claude-code)
Co-authored-by: Claude Opus 5.5 <noreply@anthropic.com>
|
||
|
DottaandPaperclip
|
199670ba99 |
fix(accounting): prevent usage receipt stalls during streamed run updates (#20385)
## Thinking Path > - Paperclip is the open source app people use to manage AI agents for work. > - Native Runner commits usage receipts before it acknowledges retained events. > - Usage receipts and streamed run logs update the same run row. > - A repeatable-read snapshot can become stale before the receipt writer locks that row. > - Continuous log writes can exhaust all accounting retries and stall the retained event. > - This pull request uses the existing run lock with READ COMMITTED for standalone receipt writes. > - Other accounting operations keep their consistent snapshot. Stall diagnostics retain safe nested error codes. ## Linked Issues or Issue Description Related: #20235. **What happened?** A hosted native run stopped on a retained usage event. Its diagnostic reported `Error at source seq N`. The saved outbox and accounting records locate the failing delivery boundary. Traces show repeated accounting transactions while streamed events still updated the run row. The historical inner exception is unavailable. A controlled PostgreSQL reproduction proves a matching defect: a run-log append after company validation makes the receipt writer's repeatable-read snapshot stale. Repeated appends exhaust all four retries with SQLSTATE `40001`. This is a demonstrated failure mechanism; attribution of the historical incident remains an inference. **Expected behavior** Commit the receipt under its existing run-row lock despite concurrent run-log writes. Observe concurrent finalization and preserve late-receipt debt. Keep duplicate receipts idempotent and reject conflicting or cross-company receipts. **Steps to reproduce** Run `server/src/services/usage-receipts-read.test.ts`. The concurrency regression uses real PostgreSQL and the production run-log append function. It commits a log append after company validation and before the receipt locks the run. Before the repair, the receipt rejects with a wrapped `40001` after four attempts. After the repair, it commits once. The finalization variant verifies that a newly settled run receives late-receipt debt without replacing settled state. ## What Changed - Allow aggregate-lock-protected accounting writers to select READ COMMITTED. Keep repeatable read as the default. - Use READ COMMITTED only for standalone usage receipt writes. Keep the existing run lock, immutable receipt journal, replay checks and transactional budget-work publication. - Add PostgreSQL regressions for concurrent log appends, concurrent finalization, duplicate delivery and the unchanged default snapshot. - Read the outer event-commit error and at most three nested causes for an existing safe error code. Exclude exception messages and SQL. - Document receipt isolation and bounded stall diagnostics. ## Verification - Red: the production receipt writer exhausted four retries with PostgreSQL `40001` under controlled concurrent run-log appends. - Red: wrapped database and transport stall diagnostics returned `Error` instead of `40001` and `ECONNRESET`. - Green: Runner control-plane tests passed all 207 cases. All 68 server assertions passed across receipt reads, native usage delivery and cost accounting. Cost-accounting teardown exceeded its 30-second limit twice on this loaded host, after all 28 assertions passed. The workspace project retained its configured 30-second hook limit despite the CLI override. This is a local suite cleanup failure, not a passing suite; the same revision passed the complete server suites in CI. - Server layered TypeScript checking passed, including source and test layers. Runner TypeScript checking passed. Server checks cover `ccfe3bdeb1ab88537a03fd6af9044f66863939a5`; the unchanged Runner checks cover its parent. - Local environment: macOS arm64, Node 26.4.0, disposable embedded PostgreSQL. Native usage-delivery tests use the real Rust receiver. - CI at `ccfe3bdeb1ab88537a03fd6af9044f66863939a5`: [build](https://github.com/paperclipai/paperclip/actions/runs/42714760702/job/129493568428), [typecheck](https://github.com/paperclipai/paperclip/actions/runs/42714760702/job/129493568367), native Runner integration, browser shards and all nine serialized server groups passed. All 12 general server shards passed in the [full run](https://github.com/paperclipai/paperclip/actions/runs/42714760702). Final rollup: 59 successful checks/statuses, three intentionally skipped checks, no pending or failed checks. - [Greptile reviewed this revision at 5/5 with no actionable findings](https://github.com/paperclipai/paperclip/pull/20385#issuecomment-6753163397). - Hosted evidence came from the task, run, saved sandbox outbox, accounting receipts and traces. The run started fresh and did not cross a deployment. No original agent turn was replayed. - The hosted repair has not been deployed. The original task has not been resumed. A fixed-revision remote-provider user journey remains unverified. ## Risks - READ COMMITTED changes snapshot timing for standalone receipt writes. The run-row lock protects all mutable receipt/accounting reads and serializes competing receipts and finalization. Other accounting operations retain repeatable read. - Receipt identity, replay conflict checks, company scoping, budget publication, retry bounds and acknowledgement rules remain intact. - No persisted format, provider identity or database schema changes. Existing saved state needs no migration. - Diagnostics inspect at most four objects and retain only the existing identifier format, with an 80-character code limit. - The reproduced race matches the incident boundary and timing, but the original inner exception was not recorded. Rollout and live acceptance remain necessary before incident resolution. ## Model Used - OpenAI Codex, GPT-6 family, with code and shell tools. The exact model ID and context window are not exposed in this session. ## Checklist - [x] I have included a thinking path that traces from project context to this change - [x] I have specified the model used (with version and capability details) - [x] I have checked ROADMAP.md and confirmed this PR does not duplicate planned core work - [x] I have searched GitHub for duplicate or related PRs and linked them above - [x] I have either (a) linked existing issues with `Fixes: #` / `Closes #` / `Refs #` OR (b) described the issue in-PR following the relevant issue template - [x] I have not referenced internal/instance-local Paperclip issues or links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip` URLs) - [x] My branch name describes the change (e.g. `docs/...`, `fix/...`) and contains no internal Paperclip ticket id or instance-derived details - [x] I have run tests locally and they pass - [x] I have added or updated tests where applicable - [x] I have updated relevant documentation to reflect my changes - [x] I have considered and documented any risks above - [x] All Paperclip CI gates are green - [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups - [x] I will address all Greptile and reviewer comments before requesting merge --------- Co-authored-by: Paperclip <noreply@paperclip.ing> |
||
|
DottaandPaperclip
|
bf818280f2 |
perf(workspaces): reserve cohort members concurrently (#20401)
## Thinking Path > - Paperclip controls agent work and preserves its workspaces. > - The online importer moves up to eight shared-source leaves under one source fence. > - Each member must have a durable reservation before capture starts. > - Serial reservations repeat the same validation cost before any archive work. > - This pull request reserves members in parallel through their existing independent transactions. > - Every reservation finishes before an error can release the fence or start capture. ## Linked Issues or Issue Description Refs: #19873, #20387, #20394. **Current behavior** A measured six-member cohort spent about 110 seconds in serial reservations. Each reservation keeps its existing source, task, recovery and journal checks. **Proposed behavior** Start the bounded member reservations together. Join all outcomes, retain member order, and refuse capture if any member fails. Keep the exact partial-journal resume contract. **Reason and benefit** This removes serial metadata work before capture. Hosted speedup has not been measured for this change. ## What Changed - Replace only the cohort reservation caller loop with `Promise.allSettled`. - Preserve the existing per-member transaction, preassigned operation ID, source fingerprint and all source fences. - Extend the real PostgreSQL failure fixture to require overlapping reservations and complete peer closure before fence release. - Document the unchanged partial-journal and atomic publication contract. ## Verification - Canonical cached worktree preflight and plugin SDK prerequisites passed on Node 24.22.2. - The unchanged production baseline failed the new reservation overlap assertion: one reader entered instead of two. The canonical PostgreSQL wrapper cleaned up. The other 21 tests were intentionally not selected. - The first baseline command failed before PostgreSQL because root-level `tsx` resolution was absent. The corrected command uses the checkout's explicit `cli/node_modules/tsx/dist/loader.mjs`. - The four focused PostgreSQL controls passed before the final rebase: overlap/join failure, exact partial-journal resume, parallel capture with both cold restores, and atomic outer-commit rollback. Eighteen tests were intentionally not selected. Server TypeScript passed. - The final branch is based on merged #20394 at `302ada90dfda0e8fbcd8a514d506d310c9843bcb`. The two directly affected PostgreSQL reservation/resume controls passed again on final head `06d436e45705da3b616a2b91725960f6e0ea52c0` (2 passed, 20 intentionally not selected; 100.56 seconds). Server TypeScript passed again. The canonical wrapper completed cleanup. - The separate Ponytail review remains 4/5. Its nonblocking fan-out warning was resolved as the documented phase contract; no source change was required. Optional multi-error aggregation is outside this change. - Fresh Greptile review is 5/5 on `06d436e45705da3b616a2b91725960f6e0ea52c0`, with no actionable findings or unresolved threads: https://github.com/paperclipai/paperclip/pull/20401#issuecomment-6754025480. - Exact-head CI is complete: 56 success, 4 skipped and 1 neutral, with no failed or pending checks. Aggregate `ci / verify` passed: https://github.com/paperclipai/paperclip/actions/runs/42718439355. - Reproduce the final focused cases on Node 24: `node --import ./cli/node_modules/tsx/dist/loader.mjs packages/db/src/test-postgres-command.ts pnpm exec vitest run server/src/services/remote-workspace-cohort-migration.test.ts -t "joins concurrent reservation validation readers|resumes the exact membership after reservation stops halfway"`. Run `pnpm --filter @paperclipai/server exec tsc --noEmit` for TypeScript. ## Risks - API phase contract: `concurrency` limits capture workers. Preflight, reservation and post-finalizer validation fan out over the exact selected member set, with the canonical maximum of eight. The original DB pool bounds connections. `concurrency: 1` does not promise one metadata query or transaction at a time. - Up to eight reservations can use independent pool connections at once. Members that pass can leave durable journals when a peer fails. The existing exact-member resume path retains those journals; this change does not retry automatically. - Capture and publication remain blocked until every reservation settles. Publication stays serial in one transaction. Saved journal schemas, singleton behavior and recovery proof checks do not change. - This does not change concurrency inside the publication transaction. One PostgreSQL connection serializes that SQL, and changing its row-lock order has no measured benefit here. ## Model Used OpenAI GPT-6 (Codex), with tool use and code execution. The runtime does not expose a more specific model identifier or context-window size. ## Checklist - [x] I have included a thinking path that traces from project context to this change - [x] I have specified the model used (with version and capability details) - [x] I have checked ROADMAP.md and confirmed this PR does not duplicate planned core work - [x] I have searched GitHub for duplicate or related PRs and linked them above - [x] I have either (a) linked existing issues with `Fixes: #` / `Closes: #` / `Refs: #` OR (b) described the issue in-PR following the relevant issue template - [x] I have not referenced internal/instance-local Paperclip issues or links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip` URLs) - [x] My branch name describes the change (e.g. `docs/...`, `fix/...`) and contains no internal Paperclip ticket id or instance-derived details - [x] I have run tests locally and they pass - [x] I have added or updated tests where applicable - [x] I have updated relevant documentation to reflect my changes - [x] I have considered and documented any risks above - [x] All Paperclip CI gates are green - [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups - [x] I will address all Greptile and reviewer comments before requesting merge Co-authored-by: Paperclip <noreply@paperclip.ing> |
||
|
Nicky LeachandClaude Opus 5.5
|
d95fdd8d79 |
feat(observability): span the unnamed gaps in run preparation (#20396)
## Thinking Path > - Paperclip is the open source app people use to manage AI agents for work > - Before a task reaches the agent, the server prepares the run: it reads the task, the workspace and the configuration, and then hands the run to the native controller > - With an OTLP endpoint, each preparation step emits a `heartbeat.prepare.<phase>` or `native.controller.<phase>` span > - On a hosted test deployment, 0.3 to 0.5 s of each `task.prepare` sits between those spans, and about 0.5 s more sits between `execution.dispatch_admission` and `native.coordinator.claim` > - Nobody can say which step is slow in that time, so latency work in this area is guesswork > - This pull request adds spans around the existing awaited work in those gaps, with the existing timing helpers and naming conventions > - The benefit is that a trace of a slow preparation now names the step that used the time ## Linked Issues or Issue Description **What existing behavior does this improve?** The OpenTelemetry trace of task preparation. Today it has unnamed gaps between the named preparation spans. **Subsystem affected** Server: heartbeat run preparation and the native controller (`server/src/services/heartbeat.ts`, `server/src/services/native-runtime/native-session-executor.ts`). **Current behavior** On a hosted test deployment (8 runs per group), `task.prepare` takes 2.6 to 3.4 s. Between `heartbeat.prepare.runtime_state` and `heartbeat.prepare.run_identity`, about 0.25 s has no span. Between `execution.dispatch_admission` and `native.coordinator.claim`, about 0.5 s has no span, and in one pair of runs it was 1.4 s. Nobody can tell which step used that time. **Proposed behavior** Spans name the existing awaited reads and writes in those gaps. The change adds no reads and records no content. The operator endpoint gate and the no-operation behaviour stay. **Reason and benefit** Latency work in this area needs a measurement. With these spans, a trace of a slow preparation names the step that used the time, so a fix can be confirmed or rejected after deployment. **Breaking changes** None. The change adds span names to the closed list. It changes no API, schema or behaviour. **Additional context** The server uses postgres.js, which the auto-instrumentation does not cover, so database spans do not fill these gaps. ## What Changed - `server/src/services/execution-preparation-timing.ts`: add the new closed phase names. - `server/src/services/heartbeat.ts`: add `heartbeat.prepare.*` spans for `chat_retry_admission`, `workspace_selection`, `dependency_readiness`, `issue_checkout`, `instance_settings`, `workspace_context`, `project_context`, `plan_wake_routing`, `routine_environment`, `responsible_user` and `execution_start`. The re-reads of the issue after a checkout use the existing `issue_context` name. - `server/src/services/native-runtime/native-session-executor.ts`: add `native.controller.*` spans for `attachment_staging`, `warm_restore`, `span_persistence` (persistence of the preparation spans to the run log) and `state_migration` before the coordinator claim. - `doc/observability.md`: list the new spans. - `server/src/__tests__/heartbeat-preparation-gap-spans.test.ts`: run a real heartbeat through native preparation with an in-memory span exporter. Check that each new span is emitted and that the new preparation spans are children of `task.execution_attempt`. ## Verification - `pnpm --filter @paperclipai/server typecheck` - `npx vitest run src/__tests__/heartbeat-preparation-gap-spans.test.ts` (fails without the source change, passes with it) - `npx vitest run src/services/heartbeat/preparation-timing-context.test.ts src/services/execution-preparation-timing.test.ts src/services/native-runtime/native-session-executor.test.ts src/__tests__/heartbeat-context-compaction-execution.test.ts` ## Risks - Low risk. The change only wraps existing awaited calls. Values and errors pass through the timing helper unchanged, and a checkout conflict still reaches the same `catch`. - Phases of 50 ms or more inside `heartbeat.prepare.*` are also written to the run log, as for the existing phases. This adds a few run-log rows on slow runs. - Without an OTLP endpoint, the helpers keep their current no-operation behaviour. ## Model Used - Claude Opus 5.5 (`claude-opus-5-5`), Anthropic, used through Claude Code with tool use (shell, file edits, test runs) and extended thinking. ## Checklist - [x] I have included a thinking path that traces from project context to this change - [x] I have specified the model used (with version and capability details) - [x] I have checked ROADMAP.md and confirmed this PR does not duplicate planned core work - [x] I have searched GitHub for duplicate or related PRs and linked them above - [x] I have either (a) linked existing issues with `Fixes: #` / `Closes #` / `Refs #` OR (b) described the issue in-PR following the relevant issue template - [x] I have not referenced internal/instance-local Paperclip issues or links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip` URLs) - [x] My branch name describes the change (e.g. `docs/...`, `fix/...`) and contains no internal Paperclip ticket id or instance-derived details - [x] I have run tests locally and they pass - [x] I have added or updated tests where applicable - [x] I have updated relevant documentation to reflect my changes - [x] I have considered and documented any risks above - [x] All Paperclip CI gates are green - [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups - [x] I will address all Greptile and reviewer comments before requesting merge 🤖 Generated with [Claude Code](https://claude.com/claude-code) --------- Co-authored-by: Claude Opus 5.5 <noreply@anthropic.com> |
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DottaandClaude Opus 5.5
|
09241442ea |
fix(server): let a native reviewer approve its review stage (#20373)
## Thinking Path > - Paperclip is the open source app people use to manage AI agents for work > - Execution policies can require an independent review stage before a task is done > - A native (Runner) agent that is the active reviewer had no way to record its decision > - `PATCH status: "done"` is refused for a native run that owns the task (#18411), and `paperclip_finish` accepts the report but leaves the stage pending > - The reviewer then searches the API until a deadline, and the task stays in review with nobody able to decide it > - This pull request records the final-stage approval on `PATCH` without releasing the run's lock, and lets the run's own finish report set the final status > - The benefit is that an agent reviewer can actually approve its review stage, in one short turn ## Linked Issues or Issue Description Refs #18411 (added the native status guard). Related: #20264 (explicit stage-decision operation, still open; this change is narrower and compatible with it). **What happened?** A native reviewer agent was woken as the active `review` participant. It read the deliverable and wrote its review in about 100 seconds. It then called `paperclip_finish` with `done`. The tool answered "Completion report accepted; the task's configured review stage is still pending". It then tried `PATCH /api/issues/{id}` with `status: "done"` and a comment. The route refused it with `native_run_status_reported_by_finish`. The agent searched the API for 2 more minutes and found no other path. The stage stayed pending. When the run ends with `done`, the status arbiter sees the pending stage and keeps the task in review (`governed_gate_pending`), so the stage can never resolve. **Expected behavior** The active review/approval participant can approve its stage from a native run. The task reaches `done` after the approval. The implementer still cannot approve. A run that is not the active participant still cannot change the task status. **Steps to reproduce** 1. Create a task with an execution policy that has one `review` stage with a native agent participant. 2. Move the task to `in_review` so the stage is pending and the reviewer agent wakes. 3. In the reviewer run, call `PATCH /api/issues/{id}` with `{ "status": "done", "comment": "Approved: ..." }`. 4. Observe `409 native_run_status_reported_by_finish`. Call `paperclip_finish` with `done` and observe that the stage stays pending. ## What Changed - `PATCH /api/issues/:id`: when the requester is the native run that holds the task lock and is the active participant, a `status: "done"` request on the final stage now records the approval decision (`executionState` completed, decision row, activity). The route removes `status` from the write, so the task stays `in_review` and the run keeps its execution lock. The run's `paperclip_finish` report then sets `done` through the normal status arbiter. - An intermediate-stage approval (which would hand the task to the next participant) and every other status change from such a run keep the existing `native_run_status_reported_by_finish` refusal. - `paperclip_finish` from the active participant (`done` or `needs_review`) while its stage is still pending is now rejected with the exact decision path, instead of being accepted with "stage still pending". - The native finalizer now treats the final-stage approval that the run itself recorded (read from the `issue_execution_decisions` row, bound to this run and agent) as the completion authority for its clean `done` report. Before this, a reviewer that cited free-text evidence had its report graded as incomplete, and the task was reopened as `in_progress` with a new wake for the reviewer. Failed verification, blocking remaining work, attention requests, other dispositions, and a still-pending stage keep the old outcome. - The reviewer/approver wake text names the decision path (`PATCH` with `status` and a required decision comment) and says a completion report does not record the decision. A Runner reviewer that needs changes is told to report them with `paperclip_block`, because a changes request from the run that owns the task is a reassignment that stops that run. - The locked review-policy recheck treats the deferred approval as a verdict, so a policy changed to `human_only` before the locked write still refuses it. ## Verification - `pnpm exec vitest run server/src/__tests__/issue-agent-mutation-ownership-routes.test.ts server/src/__tests__/issue-execution-policy-routes.test.ts server/src/__tests__/issue-comment-reopen-routes.test.ts server/src/__tests__/issue-execution-policy.test.ts packages/adapter-utils/src/server-utils.test.ts`: 5 files, 595 tests pass. - `pnpm exec vitest run server/src/services/native-runtime/native-completion-feedback.test.ts`: 29 tests pass (embedded PostgreSQL), including the decision-row binding for `executionStageApprovedByRun`. - `pnpm exec vitest run server/src/services/native-runtime/status-arbiter.test.ts server/src/services/native-runtime/native-run-finalizer-telemetry.test.ts server/src/services/native-runtime/native-stale-owner-completion.test.ts`: 72 tests pass. - New route tests fail without the route change (409 instead of 200/422) and pass with it. The new feedback test fails without the feedback change ("Completion report accepted" instead of a rejection). - `npx tsc --noEmit -p server` and `-p packages/adapter-utils`: pass. - A route test changes the review policy to `human_only` between the first check and the locked write; the deferred approval is refused (403). - Live full-stack chat eval `task-coordination.independent-review` (Runner, OpenCode) with this change: passed in GitHub Actions run 42705964209 (eval branch with the first two commits cherry-picked). The reviewer run recorded its approval 24 s after its review brief was released, reported `done` 14 s later, and the finalizer set the task to `done` with reason `execution_stage_approved`; total reviewer run 73 s. The earlier run 42702224713 exposed the finalizer evidence issue that the second commit fixes. ## Risks - Low to medium. The change is limited to one request shape: a native run, holding the lock, that is the active participant of a pending final stage, sending `status: "done"`. All other requests keep the old guard. - Between the approval and the finish report, the task shows `in_review` with a completed `executionState`. If the run fails before it reports, the existing native recovery owns the task, as for any other run. - Previous-release story: no persisted shape changes. A reviewer run that started before the deploy could not have recorded a deferred approval (the old route refused it), so the new finalizer input is false for it and the old outcome applies. - Intermediate-stage approvals and changes requests from native runs are still refused by the route. A Runner reviewer reports required changes with `paperclip_block`, which keeps the stage pending for a person. A self-service changes request needs the deferred handoff semantics in #20264. ## Model Used - Anthropic Claude Opus 5.5 (`claude-opus-5-5`), tool use and code execution in Claude Code. ## Checklist - [x] I have included a thinking path that traces from project context to this change - [x] I have specified the model used (with version and capability details) - [x] I have checked ROADMAP.md and confirmed this PR does not duplicate planned core work - [x] I have searched GitHub for duplicate or related PRs and linked them above - [x] I have either (a) linked existing issues with `Fixes: #` / `Closes #` / `Refs #` OR (b) described the issue in-PR following the relevant issue template - [x] I have not referenced internal/instance-local Paperclip issues or links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip` URLs) - [x] My branch name describes the change (e.g. `docs/...`, `fix/...`) and contains no internal Paperclip ticket id or instance-derived details - [x] I have run tests locally and they pass - [x] I have added or updated tests where applicable - [x] I have updated relevant documentation to reflect my changes - [x] I have considered and documented any risks above - [ ] All Paperclip CI gates are green - [ ] Greptile is 5/5 with no open P2s, recommendations, or follow-ups - [x] I will address all Greptile and reviewer comments before requesting merge 🤖 Generated with [Claude Code](https://claude.com/claude-code) --------- Co-authored-by: Claude Opus 5.5 <noreply@anthropic.com>canary/v2026.1109.0-canary.18 |
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DottaandPaperclip
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302ada90df |
fix(workspace): refresh source admission proofs on import resume (#20394)
## Thinking Path > - Paperclip preserves agent work and recovery obligations across server replacement. > - Online workspace imports keep durable operation and snapshot journals for interrupted work. > - A recovery admission fingerprint hashes complete run, finalizer, and lease rows. > - Accounting updates can change that hash while every saved recovery reference remains identical. > - Resume currently treats that expired admission observation as immutable source identity and refuses the existing journal. > - This pull request refreshes only that observation after exact identity checks and finalization fencing, preserving the original archive and journal. ## Linked Issues or Issue Description **What happened?** An interrupted import whose saved recovery sources have no changing online recovery hold can fail on its next attempt with `remote_workspace_migration_source_changed`. A change to a run's accounting fields changes `onlineProof.fingerprint`, even when all eight saved recovery records have the same typed references and ownership fields. **Expected behavior** For source-only admission drift, resume must compare every saved recovery source field exactly, except the supported ephemeral admission fingerprint. It must inspect the current source again, acquire the existing finalization fence, and retain strict full-proof checks through publication. It must keep the original operation, snapshot, archive, nested-child scope, and cohort identity. **Steps to reproduce** 1. Save a journal for an online import with eight recovery sources and no active online recovery holds. Interrupt after real authenticated restore of its uploaded snapshot. 2. Change only accounting fields on source 6's saved run. 3. Resume the same journal. The unchanged importer refuses it. The fixed importer preserves the original identities and commits after fresh guarded inspection. **Paperclip version or commit** Reproduced on master `9c634e42e449e91f3935cf59036981852f94a65e`. **Deployment mode** Online administrative imports with PostgreSQL. Related preservation work: https://github.com/paperclipai/paperclip/pull/20311 and https://github.com/paperclipai/paperclip/pull/20370. The independent readonly parallelism work in https://github.com/paperclipai/paperclip/pull/20387 changes different loops. ## What Changed - Compare the complete `legacyRecoverySources` records at resume, neutralizing only a valid fingerprint under the supported proof schema. Preserve every other field and refuse unsupported proof versions by name. - Reuse the current canonical full proofs. Persist them with an operation metadata compare-and-swap only after the existing finalization lock and strict reinspection succeed. - Keep strict full-proof checks within each attempt and before publication. Preserve all journal, snapshot, archive, nested-child, and cohort identities. - Add focused real PostgreSQL regressions in the existing online-source fixture, including exactly eight saved sources and repeat-apply idempotence. ## Verification - Genuine baseline RED: singleton and cohort resume both fail after accounting-only changes on the unchanged product. - `pnpm exec vitest run server/src/services/remote-workspace-online-source.test.ts -t 'eight saved recovery|changed saved recovery|recovery accounting changes|saved recovery proof'`: 8 passed. - Controls refuse changed valid references, a matched run/lease allocation change, competing ownership, and unsupported proof versions. They also prove that bookkeeping changes within an admitted attempt still refuse and a busy finalization fence prevents proof refresh. - Successful resumes preserve the operation/snapshot IDs, cipher SHA, manifest digest, byte size, nested scope, and cohort. Repeat apply creates no duplicate operation or snapshot. - Server layered typecheck, module boundaries, and whitespace checks passed. All applicable exact-head CI passed (including typecheck, build, all test shards and aggregate verify); hosted acceptance remains owned by the deployment workstream. Greptile re-reviewed the narrowed scope at 5/5. Ponytail scored 4/5, recommending a regression for the unchanged hold-bearing refusal; the maintainer explicitly kept that separate behavior outside this source-only fix. ## Risks This changes only source-proof resume admission. `onlineRecoveryHolds` and their action/intent fingerprints remain compared exactly, as on the baseline: a hold-bearing journal whose hold proof changes still refuses. Supporting that separate case would require preserving and validating the hold owner’s complete intent facts; this PR deliberately retains that safety check. Bookkeeping that changes during an active attempt still causes the existing strict publication checks to refuse that attempt. Older unsupported proof shapes remain refused. The metadata update uses the existing company/workspace/operation identity, running/unfinished status, and metadata compare-and-swap. No schema, provider, or storage format changes are included. ## Model Used OpenAI Codex, based on GPT-6, with tool use and code execution. The exact deployment identifier and context-window size are not exposed in this session. ## Checklist - [x] I have included a thinking path that traces from project context to this change - [x] I have specified the model used (with version and capability details) - [x] I have checked ROADMAP.md and confirmed this PR does not duplicate planned core work - [x] I have searched GitHub for duplicate or related PRs and linked them above - [x] I have either (a) linked existing issues with `Fixes: #` / `Closes: #` / `Refs: #` OR (b) described the issue in-PR following the relevant issue template - [x] I have not referenced internal/instance-local Paperclip issues or links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip` URLs) - [x] My branch name describes the change (e.g. `docs/...`, `fix/...`) and contains no internal Paperclip ticket id or instance-derived details - [x] I have run tests locally and they pass - [x] I have added or updated tests where applicable - [x] I have updated relevant documentation to reflect my changes - [x] I have considered and documented any risks above - [x] All Paperclip CI gates are green - [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups - [x] I will address all Greptile and reviewer comments before requesting merge Co-authored-by: Paperclip <noreply@paperclip.ing> |
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Nicky LeachandPaperclip
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1838de8c6c |
Pause agents automatically when moving to a plugin environment (#20375)
## Thinking Path > - Paperclip manages AI agents and their execution environments. > - Core owns agent lifecycle state and controls when work can run. > - A plugin environment can need a computer that belongs to the agent. > - Moving a ready agent to that environment currently requires manual pause and resume actions. > - Saving the environment is sufficient intent to perform those routine steps. > - This change records the pause with the environment update and uses the existing lifecycle worker. > - Work can resume only after execution stops, the plugin starts its resources, and verification passes. ## Linked Issues or Issue Description Related: #19173 introduced environment-scoped plugin selection and the manual-pause requirement. I searched for related pull requests and found no duplicate fix. No separate issue is linked. **What happened?** Saving a ready agent with an environment whose lifecycle plugin is not selected returns a conflict. The error tells the user to pause the agent, change its environment, and resume it. **Expected behavior** Saving the environment change starts the required pause, resource setup, and verification automatically. Existing manual, budget, and company holds still block resume. **Steps to reproduce** 1. Use an agent in `ready` on an environment without an agent-owned plugin. 2. Select an agent-owned plugin environment in the agent configuration. 3. Save without first pausing the agent. Before this fix, the save fails. With this fix, the agent moves through `pausing`, `resuming`, and `verifying` before `ready`. ## What Changed - Save the new environment and automatic pause in the same transaction. Keep the existing plugin selection during stop. - Use the existing completion of a pause without holds to resume automatically. Set the saved resume target to `verifying` so the new environment must pass its test. - Preserve independent pause holds, lifecycle version checks, notifications, resource status events, and worker recovery. - Add migration tests for idle and running agents, real process-stop proof across a worker restart, added holds, failed verification, and route authorization. - Update the lifecycle and development docs. Keep the feature maps unchanged, as required for a small behavior fix. ## Verification - Current revision: `300f57539bce9b198406c3793ab3c2de46492659`. - Lifecycle and case API discovery suites passed after updating the branch to master. The final environment-plugin suite passed all 22 tests, including four real-route authorization cases for users and agents. Coverage includes real process-stop proof across worker replacement, independent holds, and failed migration verification. - Server typecheck: passed on the current base. All workspace typechecks and `pnpm build` passed before the base update; fresh CI covers the updated base. - `node scripts/check-module-boundaries.mjs`, `node scripts/check-maps.mjs`, and `git diff --check`: passed. - Reviewed the diff for secrets, personal data, private addresses, and run artifacts before each push. - [Current CI](https://github.com/paperclipai/paperclip/actions/runs/42714733533): passed on `300f57539bce9b198406c3793ab3c2de46492659` (52 successful jobs; the optional test-selection optimization was skipped). Standard Greptile: 5/5 on the current revision, with no unresolved findings. The security scanner accepted the documented configuration-authority policy. - Earlier CI failed the `case-history-api-discovery` assertion for the query `case for task`. It also failed locally. The branch now includes master's fix #20382, and that test passes. The migration implementation did not change. The superseded CI attempt was cancelled after recording the failure. - Full local `pnpm test:run`: incomplete; stopped after two passing chat partitions. The focused suites passed, and required CI supplies broad coverage, as specified in the repository instructions. - Local target: isolated source checkout on macOS ARM64, Node 26, disposable PostgreSQL, fixture lifecycle plugin. Initial database startup failed because the bundled macOS PostgreSQL package lacked dylib aliases. Temporary dependency aliases repaired startup; the focused database tests then passed. The installed Rust toolchain also needed to be added to PATH. - The pending-stop test retains a live process ID in the cancelled run. The real host stop check blocks plugin setup. After stop acknowledgment and worker replacement, the saved migration reaches readiness. ## Risks - Saving this environment change can stop current execution. The system performs that pause as part of the requested migration. - A failed stop, plugin call, or verification keeps the agent blocked and uses existing retry behavior. - Editing a shared environment or the instance default still uses its existing conflict checks. This change covers the individual agent environment update. - Configuration permission authorizes the temporary system pause needed for the resource move. Separate manual-pause authority is not required for this configuration operation. Real route tests cover authorized and denied users and agents. - No schema migration or deployment is included. A fixture plugin does not prove live computer provisioning or model execution. ## Model Used OpenAI Codex, based on GPT-6, with code execution and tool use. The exact runtime model ID and context limit are not exposed in this session. ## Checklist - [x] I have included a thinking path that traces from project context to this change - [x] I have specified the model used (with version and capability details) - [x] I have checked ROADMAP.md and confirmed this PR does not duplicate planned core work - [x] I have searched GitHub for duplicate or related PRs and linked them above - [x] I have either (a) linked existing issues with `Fixes: #` / `Closes #` / `Refs #` OR (b) described the issue in-PR following the relevant issue template - [x] I have not referenced internal/instance-local Paperclip issues or links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip` URLs) - [x] My branch name describes the change (e.g. `docs/...`, `fix/...`) and contains no internal Paperclip ticket id or instance-derived details - [x] I have run tests locally and they pass - [x] I have added or updated tests where applicable - [x] I have updated relevant documentation to reflect my changes - [x] I have considered and documented any risks above - [x] All Paperclip CI gates are green - [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups - [x] I will address all Greptile and reviewer comments before requesting merge --------- Co-authored-by: Paperclip <noreply@paperclip.ing> |
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DottaandPaperclip
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ec75547a2e |
perf(workspaces): validate cohort members concurrently (#20387)
## Thinking Path > - Paperclip is the open source app people use to manage AI agents for work. > - Online workspace migration preserves each member under shared source locks. > - A cohort must validate every member before it reserves or captures state. > - Two read phases checked each member in sequence. > - An eight-member operation spent about eight minutes in those phases before capture. > - This pull request runs the bounded readers together and joins all results. > - Each source check, lock, and write order stays in place. ## Linked Issues or Issue Description **What happened?** An eight-member cohort spent 4 minutes 13 seconds in preflight, then 2 minutes 20 seconds in serial reservation, then 4 minutes 10 seconds in the read checks after finalizer locks. Capture started only after these phases. The two read phases invoked the same checks in sequence for each member. **Expected behavior** Run these read checks together within the existing eight-member limit. Wait for every started reader before throwing or releasing the source or finalizer fence. Keep reservation and publication serial. **Steps to reproduce** 1. Import a shared-source cohort with several members. 2. Delay one member's preflight or recovery inspection. 3. Observe that the old loop does not start the next reader until that inspection ends. 4. Fail one reader while another is still running. The fence must remain held until both readers finish. **Paperclip version or commit** Reproduced baseline: `facd409073c3c149421fd8f5af86c571fc28f294`. The branch now includes `9c634e42e449e91f3935cf59036981852f94a65e` and its merged queue-owner change. The queue hunks are unchanged. **Deployment mode** Server with PostgreSQL and online workspace migration. Related: [cohort migration in #19873](https://github.com/paperclipai/paperclip/pull/19873), [indexed workspace lookups in #20372](https://github.com/paperclipai/paperclip/pull/20372), and [queued source-lock admission in #20370](https://github.com/paperclipai/paperclip/pull/20370). The duplicate search found no open change for these two read phases. ## What Changed - Run cohort preflight member checks with `Promise.allSettled`. The existing input limit bounds this phase to eight readers. - Run the member checks after finalizer lock acquisition the same way. - Throw the first rejected result in the original member order after every reader has joined. - Add one fault fixture for both phases. It checks real source/finalizer locks, peer joining, retained local data, and the absence of capture or publication. ## Verification - Against the unchanged baseline, the two new phase cases failed because only one reader started instead of two. These were behavioral failures, not setup failures. - Focused real-PostgreSQL cohort checks selected 13 cases. The first run passed 10 and failed three existing controls. The two new reader-join cases passed. Eight unrelated cases were not selected. - The first run's existing capture overlap check observed one active uploader instead of two. Two existing fence/commit controls reached their 15-second test limits. Server typechecking ran at the same time. This does not establish the cause of those failures. - One retry ran only those same three controls after typechecking finished. All three passed with unchanged source, assertions, and deadlines. Eighteen cases were not selected. The earlier failures remain accounted for; they are not classified as infrastructure faults or flakes. - `pnpm --filter @paperclipai/server typecheck` and `git diff --check` passed. - These focused counts were recorded before the non-overlapping queue-owner rebase. On final head `06158d905c4716bf44b1d028f96c706ac60e0e11`, both new reader-fence cases passed again. Nineteen cases were not selected in this recheck. - Focused commands: - `pnpm --filter @paperclipai/server exec vitest run src/services/remote-workspace-cohort-migration.test.ts -t 'joins|captures two shared-Git|before reservation|source fingerprints|member journal|outer commit|fence connection' --maxWorkers=1` - Retry only: `pnpm --filter @paperclipai/server exec vitest run src/services/remote-workspace-cohort-migration.test.ts -t 'captures two shared-Git|actual outer commit|actual fence connection' --maxWorkers=1` - Checks used Node 24.22.2, pnpm 9.15.4, and disposable PostgreSQL 18.1. No hosted operation used this patch. End-to-end improvement is unverified. - Public commands, input limits, journal state, and recovery contracts do not change. No command documentation update is needed. ## Risks - Concurrent reads increase database and filesystem load while source locks are held. The existing cohort input limit bounds each phase to eight readers. Initial source discovery already uses the same bound. - A failed phase waits for started peers. This retains the fence until their work ends. Existing query and caller limits remain in place. - Serial reservation and publication remain. Every freshness, fingerprint, recovery, and publication check still runs. - The local tests prove overlap and joining. They do not establish a hosted speedup. Database contention can limit the benefit. ## Model Used OpenAI Codex, GPT-6 family. The exact runtime model ID and context window are not exposed in this session. Used reasoning, code editing, shell tools, and real PostgreSQL tests. ## Checklist - [x] I have included a thinking path that traces from project context to this change - [x] I have specified the model used (with version and capability details) - [x] I have checked ROADMAP.md and confirmed this PR does not duplicate planned core work - [x] I have searched GitHub for duplicate or related PRs and linked them above - [x] I have either (a) linked existing issues with `Fixes: #` / `Closes #` / `Refs #` OR (b) described the issue in-PR following the relevant issue template - [x] I have not referenced internal/instance-local Paperclip issues or links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip` URLs) - [x] My branch name describes the change (e.g. `docs/...`, `fix/...`) and contains no internal Paperclip ticket id or instance-derived details - [x] I have run tests locally and they pass - [x] I have added or updated tests where applicable - [x] I have updated relevant documentation to reflect my changes - [x] I have considered and documented any risks above - [ ] All Paperclip CI gates are green - [ ] Greptile is 5/5 with no open P2s, recommendations, or follow-ups - [x] I will address all Greptile and reviewer comments before requesting merge Co-authored-by: Paperclip <noreply@paperclip.ing> |
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Nicky LeachandPaperclip
|
2550f399d9 |
fix(lifecycle): align stop proof for pre-dispatch resource waits (#20384)
## Thinking Path > - Paperclip manages AI agents and controls when their work can run. > - An agent pause waits until every earlier run has stopped. > - Recovery already treats verified workspace and AI-capacity waits as pre-dispatch outcomes. > - The stop proof did not accept those same receipts. Historical waits could keep an agent pausing forever. > - This pull request shares the resource-wait classification and the existing execution-event check. > - The benefit is consistent stop evidence without a new lifecycle command, database backfill, or host-boot assumption. ## Linked Issues or Issue Description Refs #18147 and #17718. This fixes the verified resource-wait case of #18147. It does not certify ambiguous historical runs that have no positive non-execution evidence. An agent can have an old cancelled legacy run with `errorCode: workspace_busy`, `executionStage: preparing`, and `executionRecovery: { kind: workspace_wait, providerWorkStarted: false }`. No process, native coordinator, or retained resource exists. Recovery recognizes this as a resource wait, but pause previously required a stop acknowledgment from an executor that never started. ### Credit and related work Thanks to @br1an-c0des (#17692) and @crownlayerapp (#15383) for the focused preparation and shared-admission analysis, @lucasweismann-ai (#18072) for the durable dispatch-evidence and race analysis, and @Pdesengrini (#18905) for the cancellation-receipt and process-identity guard cases. We reviewed these alternatives before implementing this smaller change. No contributor commits were cherry-picked. The design uses receipts already written by core. It does not adopt a reboot-time bypass, a new adapter-entry journal, or a pause-abort route. #17236 and #20037 address the separate cost of history reads. ## What Changed - Add one shared classifier for matching workspace and AI-capacity wait receipts. Use it in legacy recovery and cancellation stop proof. - Reuse the existing dispatch-event predicate instead of maintaining another event list. - Retain checks for native execution references, unresolved workspace obligations, controller leases, and resource cleanup. A live controller or cleanup still in flight cannot pass the proof. - Add a focused PostgreSQL suite. It drives the real pause worker with historical wait records and checks Retry eligibility against the same evidence. - Document the contract. No schema, API, UI, dependency, or scheduling change is required. ## Verification Source checkout on macOS arm64, Node 26.12.0, isolated local PostgreSQL 18, synthetic data only. ```sh node node_modules/vitest/vitest.mjs run --root server \ src/modules/agent-lifecycle/__tests__/resource-wait-stop.test.ts \ src/services/legacy-execution-recovery.test.ts ``` - 61 tests passed across these two files. - All eight positive regressions failed on unchanged master. The fix restores them. - After rebasing onto current master, the 61 focused tests passed again. Another 53 selected tests passed in `explicit-native-continuation.test.ts` with `-t 'pre-dispatch review wait|unclaimed workspace retry|historical native preparation'`. The other 361 cases in that file were not run. - Guard cases cover wrong/missing receipts, dispatch events, process identity, native ownership, live controller leases, workspace recovery, cleanup in flight, unreceipted remote resources, and an unknown historical HTTP dispatch. - A remote lease passes only after its exact termination receipt is stored. - Secret/PII diff scan and `git diff --check` passed. - Standard Greptile reviewed commit `201a61d2bb63290ca9b9b9d524e6c6715a872310`: [5/5 with no actionable findings](https://github.com/paperclipai/paperclip/pull/20384#issuecomment-6753165178). No review threads are unresolved. - Local testing is limited to affected cases. GitHub CI owns broad typecheck, build, and test coverage. Verification setup failures remain accounted for: worktree preflight could not complete because Cargo is unavailable; the first bundled PostgreSQL run failed because its macOS binary lacks a shared library. The focused tests passed on a separate, temporary local PostgreSQL 18 cluster. An early local server typecheck could not resolve the unbuilt Runner package; it is not claimed as a pass. ## Risks - Stop proof now accepts existing positive resource-wait receipts. Missing PIDs, terminal status, elapsed time, and a different boot ID remain insufficient. - The receipt must match its error code. The runtime must remain unresolved, with a preparation or settled stage and no conflicting native or workspace references. - The shared cancellation proof is also used by explicit continuation and Retry. Those paths keep their existing user-intent, ownership, pause, budget, and authorization gates. A stop proof does not itself start another run. - Runs that lack usable evidence remain held. This PR does not claim to repair every run shape reported on #18147. - No migration or live data edit is needed. No hosted deployment is included. ## Model Used OpenAI GPT-6 through Codex, with repository inspection, code execution, PostgreSQL regression tests, and GitHub tools. The exact serving revision, context window, and internal thinking configuration are not exposed in this session. ## Checklist - [x] I have included a thinking path that traces from project context to this change - [x] I have specified the model used (with version and capability details) - [x] I have checked ROADMAP.md and confirmed this PR does not duplicate planned core work - [x] I have searched GitHub for duplicate or related PRs and linked them above - [x] I have either (a) linked existing issues with `Fixes: #` / `Closes #` / `Refs #` OR (b) described the issue in-PR following the relevant issue template - [x] I have not referenced internal/instance-local Paperclip issues or links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip` URLs) - [x] My branch name describes the change and contains no internal Paperclip ticket id or instance-derived details - [x] I have run tests locally and they pass - [x] I have added or updated tests where applicable - [x] I have updated relevant documentation to reflect my changes - [x] I have considered and documented any risks above - [ ] All Paperclip CI gates are green - [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups - [x] I will address all Greptile and reviewer comments before requesting merge Co-authored-by: Paperclip <noreply@paperclip.ing> |
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DottaandPaperclip
|
9c634e42e4 |
fix(workspace): bound queued source-lock admission for imports (#20370)
## Thinking Path > - Paperclip manages AI agents and their work. > - Existing local workspaces need durable imports before a volume-free deployment. > - Imports must acquire the same source locks as workspace writers. > - Try-only admission can repeatedly lose to background maintenance, even when each writer finishes. > - This pull request adds an optional bounded wait to the canonical migration APIs. > - Operators can join the source-lock queue while all existing preservation checks remain active. ## Linked Issues or Issue Description **What happened?** An online import can repeatedly return `workspace_source_busy` while background workspace maintenance reacquires its project source lock. The import does not join the PostgreSQL lock queue. **Expected behavior** An administrative import can wait for a finite writer to finish. One wait budget covers the complete source scope. Timeout or cancellation must release acquired locks before the import reserves a journal. **Steps to reproduce** 1. Hold the source lock for an eligible local workspace. 2. Start an online import while the writer holds that lock. 3. Release the writer. Before this change, the import has already refused admission. With `sourceLockWaitMs`, the import acquires the source scope and commits normally. **Paperclip version or commit** Reproduced on master `0e3fdebea8257bdff11573081c76b306f12db230`. **Deployment mode** External PostgreSQL with an online workspace import. Related preservation work: https://github.com/paperclipai/paperclip/pull/20311. ## What Changed - Add optional `sourceLockWaitMs` to singleton and cohort migration APIs. Omitted options keep current admission behavior. - Queue the sorted source keys with one decreasing wait budget. Abort cancels only the dedicated backend identified by PID and backend start time. - Use an independent source transaction for queued singleton imports. Keep lifecycle checks, fresh source checks, journal ownership, and publication after commit. - Document the canonical API option. Add real PostgreSQL importer regressions for release, timeout, abort, and partial-key cleanup. - Correct the inherited task-case lookup summary so the existing search-discovery regression passes without changing its assertion or search algorithm. ## Verification - Baseline RED: the new singleton regression fails on the unchanged product because the import returns busy without queueing. - `pnpm exec vitest run server/src/services/remote-workspace-migration.test.ts -t 'queued|bounds the whole source queue'`: 20 passed, including five new cases. - `pnpm exec vitest run server/src/services/isolated-remote-workspace-source-lock.test.ts`: 4 passed. - Server layer typecheck, `node scripts/check-module-boundaries.mjs`, and `git diff --check` passed. - Tests used Node 24.22.2 and the existing embedded PostgreSQL fixture. Hosted rollout verification remains pending. - CI build, typecheck, browser suites, all serialized suites, and the other general shards passed. The final server shard failed only the inherited `case-history-api-discovery.test.ts:14` search-ranking assertion. Its unchanged local regression reproduces on the base and passes 3/3 with a separate one-line route-summary correction. The shared one-line summary correction is included in follow-up commit `8163ffa9d4728134676b84c8c242a5bf62c802b5`; the unchanged case-discovery suite passes 3/3 locally. The original CI attempt remains failed: https://github.com/paperclipai/paperclip/actions/runs/42704666536/job/129458605783. ## Risks Queued admission can hold earlier source keys while it waits for a later key. The caller controls the finite budget. The abort path opens a short-lived dedicated cancellation connection. If cancellation cannot connect, PostgreSQL's remaining lock timeout still bounds the wait. This option must be called at the root of administrative work; an external scope that already holds the same source locks can cause self-contention. The existing pre-held journal-resume path must keep its omitted-option behavior. ## Model Used OpenAI Codex, based on GPT-6, with tool use and code execution. The exact deployment identifier and context-window size are not exposed in this session. ## Checklist - [x] I have included a thinking path that traces from project context to this change - [x] I have specified the model used (with version and capability details) - [x] I have checked ROADMAP.md and confirmed this PR does not duplicate planned core work - [x] I have searched GitHub for duplicate or related PRs and linked them above - [x] I have either (a) linked existing issues with `Fixes: #` / `Closes: #` / `Refs: #` OR (b) described the issue in-PR following the relevant issue template - [x] I have not referenced internal/instance-local Paperclip issues or links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip` URLs) - [x] My branch name describes the change (e.g. `docs/...`, `fix/...`) and contains no internal Paperclip ticket id or instance-derived details - [x] I have run tests locally and they pass - [x] I have added or updated tests where applicable - [x] I have updated relevant documentation to reflect my changes - [x] I have considered and documented any risks above - [ ] All Paperclip CI gates are green - [ ] Greptile is 5/5 with no open P2s, recommendations, or follow-ups - [x] I will address all Greptile and reviewer comments before requesting merge --------- Co-authored-by: Paperclip <noreply@paperclip.ing> |
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DottaandClaude Opus 5.5
|
46ca7d4377 |
fix(api-search): stop function words from pushing case lookup off page one (#20382)
## Thinking Path
> - Paperclip is the open source app people use to manage AI agents for
work
> - Chat and task agents find API operations with `search_api`, which
ranks the runner API catalog by word matches in each operation's method,
path and summary
> - The ranker scored function words such as "for", "the" and "of" like
resource words, so any summary that says "for" got 5 points for that
word alone
> - #20355 added two chat-bootstrap summaries that say "for up to ten
tasks" and "for one task". After that, the query "case for task" put
`GET /api/issues/{issueId}/cases` at rank 6, off the first page of 5
> - #20354 promised that agents find a task's case on the first search
page, and its test `case-history-api-discovery.test.ts` now fails on
master
> - This pull request stops the ranker from scoring function words, so
the resource words in the query decide the rank
> - The benefit is that master is green again and agents find the case
lookup (and other "X for an issue" reads) on the first page, whatever
new summaries say "for"
## Linked Issues or Issue Description
Refs #20354, #20355. Supersedes #19388 (the same ranker change, opened
earlier and not merged).
**What happened**
On a clean checkout of master at
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DottaandPaperclip
|
3cc1032f6a |
fix: deliver saved answers to dependency-blocked tasks (#20363)
## Thinking Path > - Paperclip lets people direct agent work through tasks and structured answers. > - Dependencies stop task execution until prerequisite work finishes. > - A person must still be able to answer or redirect the assignee of a blocked task. > - Ordinary comments already get a bounded answer/triage turn. A saved question response has no comment ID, so the same gates reject it. > - Later dispatch also requires an active task and tries to check it out. That conflicts with bounded interaction on a blocked task. > - This pull request verifies the stored human response at each gate and keeps the turn in bounded interaction mode. > - The assignee can receive the answer without starting dependency work or removing its blockers. ## Linked Issues or Issue Description Refs #19923. That change covers dependency waits and comment retries. This change covers stored interaction responses that have no comment ID. **What happened?** A parent task waits on a parked child. The assignee asked a setup question. After a person answers, the response stays queued. Sending that saved response is refused as `issue_dependencies_blocked`. Ordinary new messages can reach the same assignee. Passing admission alone is insufficient. The dispatch status check rejects a blocked task, and automatic checkout then tries to start work whose prerequisites are unfinished. **Expected behavior** Deliver the stored human answer or confirmation to its requesting assignee as a bounded answer/triage turn. Keep the task blocked and keep its dependency relationships. Preserve current-owner, pause, approval, budget, recovery, and execution gates. **Steps to reproduce** 1. Assign a parent task and make a backlog child block it. 2. Save a question on the parent and answer it as a person. 3. Dispatch its resolved-interaction wake, or send the saved answer from the task queue. 4. Observe that the answer does not reach the provider while an ordinary comment can run in answer/triage mode. **Paperclip version or commit** Reproduced on master at `653ab8b18f76`. This branch is rebased onto master at `0e3fdebea8`. ## What Changed - Verify the stored response by company, task, requesting agent, status, kind, human resolver, and resolution time. A context flag alone is insufficient. - Allow a verified response through dependency admission and claim in the existing bounded interaction mode. - Recheck that response during scheduled retry promotion and final provider dispatch. - Keep bounded responses from checking out the blocked task or setting it to `in_progress`, including when the last blocker finishes during preparation. - Preserve continuation classification through workspace and AI-account resource waits, so the final response and owner checks still run. - Correct the task-case API summary so the existing `case for task` discovery regression passes on the first search page. This fixes a pre-existing failure exposed by full CI, without changing search ranking or assertions. - Ignore obsolete Retry notices after newer conversation work, without acknowledging saved input or changing execution authority. - Document the response contract. Add real PostgreSQL and assembled-heartbeat regressions. ## Verification - Final commit `ba4b337cf1bb0236b7c0a742665b222ee894ff51`: [required CI passed, attempt 2](https://github.com/paperclipai/paperclip/actions/runs/42706363120/attempts/2), including typecheck, production build, server/chat tests, Runner checks, and all 8 browser shards. PR status: 59 passing checks and 3 normal skips. - Red: answered questions and accepted/rejected confirmations return no admitted run before the fix. All three new positive cases fail at the dependency gate. A resource-wait retry also reproduces as refused before its gate is fixed. - Green: at delivery revision `9375a603e4`, focused heartbeat integration and classification passed 14 tests; retry scheduling and dispatch safety passed 241 tests. These use real PostgreSQL and controlled adapter and resource-availability boundaries. The wider initial dependency, native-continuation, and queue suites also passed before the final refinements. - Negative cases keep pending, missing, wrong-task, and agent-resolved responses blocked. Changing the response proof immediately before dispatch cancels the run without calling the provider. Policy controls retain the current assignee, task status, and pending approval checks. - Positive cases execute once, leave the parent blocked, preserve the dependency edge, and leave the child in backlog with no child execution. The same saved response survives a resource wait; removing its human proof refuses promotion. - The resource-wait provider-boundary and blocker-completion regressions also failed before their fixes. All 14 focused integration and classifier cases passed at delivery revision `9375a603e4`, including a changed response during retry preparation. - Red: a retained Retry for an older run makes a newer successful conversation display as failed. Green: all 78 database-backed query and interruption-presentation tests pass, including a later real failure and independent queued input controls. - Server layered typecheck and module-boundary checks passed at `11992aad0c7fbaf13e7548d71ee633560bd8bb6f`, before the one-line API summary correction. That CI passed build, typecheck and every browser shard, but exposed the pre-existing case-search assertion and a report-assets test timeout. Final-head CI passed as linked above. - Fresh Greptile review is 5/5 on final commit `ba4b337cf1bb0236b7c0a742665b222ee894ff51`, with no unresolved threads. - The existing API discovery suite reproduced its first-page assertion before the summary correction; all 3 cases pass afterward. The timed-out report-assets privacy test passed locally in isolation and the full support job passed on the final-head rerun. Runner shutdowns interrupted the first attempt; affected jobs were rerun once without code changes. A separate onboarding timeout also passed on that rerun. - `pnpm verify --explain` requests broad CI because the execution contract is a global input. The final CI run supplied that coverage. - Separately recovered the reported staging conversation through an ordinary message and the existing steering control. The agent acknowledged the message and the saved-answer queue drained. The fresh Notebook action subsequently succeeded. This was on the previously deployed revision; it does not claim this code is deployed. ## Risks - This changes admission and dispatch. Each gate checks the persisted response; no caller-supplied marker grants the exception. - The bounded turn does not check out the task, resolve a dependency, or approve another action. Existing pause, ownership, budget, approval, and stopped-execution controls still apply. - Each additional lookup is one primary-key read and runs only for a response on a dependency-blocked path. There is no new polling worker. - No migration is required. Older queued contexts get the exception only when their stored human response still verifies. No prior run or action is replayed by this change. - This PR does not roll out the code to staging. ## Model Used OpenAI Codex, GPT-6 family, with repository tools, code execution, and browser inspection. The runtime does not expose the exact model ID, context-window limit, or reasoning-mode label; those values are not asserted. ## Checklist - [x] I have included a thinking path that traces from project context to this change - [x] I have specified the model used (with version and capability details) - [x] I have checked ROADMAP.md and confirmed this PR does not duplicate planned core work - [x] I have searched GitHub for duplicate or related PRs and linked them above - [x] I have either (a) linked existing issues with `Fixes: #` / `Closes #` / `Refs #` OR (b) described the issue in-PR following the relevant issue template - [x] I have not referenced internal/instance-local Paperclip issues or links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip` URLs) - [x] My branch name describes the change (e.g. `docs/...`, `fix/...`) and contains no internal Paperclip ticket id or instance-derived details - [x] I have run tests locally and they pass - [x] I have added or updated tests where applicable - [x] I have updated relevant documentation to reflect my changes - [x] I have considered and documented any risks above - [x] All Paperclip CI gates are green - [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups - [x] I will address all Greptile and reviewer comments before requesting merge --------- Co-authored-by: Paperclip <noreply@paperclip.ing> |
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DottaandPaperclip
|
eebdfe71b1 |
fix(ui): show submitted screenshots and Markdown in steering messages (#20367)
## Thinking Path > - Paperclip is the open source app people use to manage AI agents for work. > - People send follow-up messages while an agent works. > - The queue above the composer holds those messages until delivery. > - The queue showed raw Markdown and had no screenshot previews. > - Submitted screenshots stayed in the composer until the save response arrived. > - This pull request shows formatted text and previews in the queue at submission. > - It keeps upload receipts so failed saves can restore the draft and its files. ## Linked Issues or Issue Description **What happened?** Send a message with Markdown and screenshots while an agent works. The queue shows Markdown source. It has no screenshot previews. The composer keeps the submitted screenshots until the save response arrives. **Expected behavior** Show formatted text and screenshot previews in the queue. Clear the submitted previews with the text. Restore them if the save fails. Keep files added for the next message. **Steps to reproduce** 1. Open the Screenshot Submission Storybook case under Steering and queued messages. 2. Add a screenshot and formatted text. Select Send. 3. Leave the simulated save pending. Inspect the queue and composer. 4. Reject the save. Confirm the draft and screenshots return. Retry and complete the save. Related work: #19321 bounds the queued-message list. This fix keeps that scrolling behavior. ## What Changed - Hide submitted attachment previews as soon as Send clears the text. Keep their upload receipts until the request settles. - Use the shared Markdown renderer in queued rows. Show up to three compact screenshots with a count for more images. Strip standalone image syntax from the text preview. - Keep paragraph boundaries. Wrap thumbnails and controls within narrow rows. - Load queue previews only from local attachment and asset content paths. Add an opt-in image omission mode to the shared Markdown renderer for compact queue text. - Correct the case lookup API summary so the existing search test passes with the full catalog. - Add regressions for successful, rejected, and uncertain saves. Check files added to the next draft. - Add a production-component Storybook case with controlled save responses and a desktop/mobile browser test. - Document the queue display and draft recovery behavior in DESIGN.md. ## Verification - Red: the original components fail five new unit cases. The desktop and mobile browser cases also fail on raw Markdown. Screenshots show the previews still in the composer. - Green: 256 composer, queue, and shared Markdown unit tests pass. - Related coverage: 466 thread, draft, and attachment tests pass. One existing test is skipped. - Three browser cases pass. Desktop and mobile cases check pending save, rejection, retry, successful save, and steering. A 320px case checks separate paragraphs with no margins, three loaded thumbnails, the additional-image count, and auto-send controls. It checks that all controls and images fit within the queue. - UI typecheck and design token gates pass after the review fixes. The initial implementation also passed the UI production build, Storybook catalog checks, and 30 map/catalog tests. The final PR workflow passed typecheck, build, all required test suites, and browser E2E checks. - Browser command: `pnpm exec playwright test queued-message-screenshots.spec.ts --config=tests/storybook-visual/playwright.config.ts --project=stories`. Use `STORYBOOK_TEST_BASE_URL` to target an owned Storybook server. - Review regressions first failed with two unit failures and an inline-paragraph browser failure. They pass after the fixes. - Initial CI failed the case lookup search test. It reproduced locally and now passes all three cases after the API summary correction. - Initial CI also failed process identity inspection during a server shutdown test. All 22 focused shutdown tests pass locally without source changes. The cause remains unconfirmed; the final CI Runner support suite also passed without changes to process cleanup. - The browser cases mount production components with simulated upload/save and steer responses. They do not prove backend persistence or live provider delivery. - `pnpm verify` returns exit 2 because DESIGN.md is a global CI input. The required PR workflow supplies the broad CI coverage. - Native preflight cannot finish because Cargo is absent in this environment. UI dependencies were installed. The missing plugin SDK build was prepared before the successful UI checks. - Final head: `2219de45721360d36341ea1ae46641b6bcb20360`. [CI run](https://github.com/paperclipai/paperclip/actions/runs/42708839687) passed. No checks are pending or failing. Greptile and Paperclip Review each gave 5/5. All five prior review threads are resolved. ## Risks - Narrow rows can grow to show two text lines and thumbnails. The existing queue height limit still applies. - Screenshot previews use the existing image-reference parser and a local attachment path filter. Image omission is opt-in; thread and decision media keep their existing modes. - Pending uploads remain in draft state while their previews are hidden. Rejection and uncertain-response tests check that the same receipts return without losing later attachments. ## Model Used - OpenAI Codex, based on GPT-6. The runtime does not expose a more specific serving model ID or context limit. Used reasoning, tools, code execution, and browser checks. ## Checklist - [x] I have included a thinking path that traces from project context to this change - [x] I have specified the model used (with version and capability details) - [x] I have checked ROADMAP.md and confirmed this PR does not duplicate planned core work - [x] I have searched GitHub for duplicate or related PRs and linked them above - [x] I have either (a) linked existing issues with `Fixes: #` / `Closes #` / `Refs #` OR (b) described the issue in-PR following the relevant issue template - [x] I have not referenced internal/instance-local Paperclip issues or links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip` URLs) - [x] My branch name describes the change (e.g. `docs/...`, `fix/...`) and contains no internal Paperclip ticket id or instance-derived details - [x] I have run tests locally and they pass - [x] I have added or updated tests where applicable - [x] I have updated relevant documentation to reflect my changes - [x] I have considered and documented any risks above - [x] All Paperclip CI gates are green - [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups - [x] I will address all Greptile and reviewer comments before requesting merge --------- Co-authored-by: Paperclip <noreply@paperclip.ing> |
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DottaandPaperclip
|
facd409073 |
perf(workspaces): index legacy workspace companion lookups (#20372)
## Thinking Path > - Paperclip is the open source app people use to manage AI agents for work. > - Online workspace migration must retain prepared sources and recovery holds. > - Companion discovery reads saved workspace references from run profiles. > - The selector can scan large saved profiles even when it returns few rows. > - This pull request adds one company and workspace expression index. > - Companion discovery uses the same expression as existing migration lookups. > - The result preserves each source check and reduces history scan work. ## Linked Issues or Issue Description **What happened?** The companion selector used a JSON path expression with no matching index. A read-only plan on about 22,000 run rows showed a sequential scan over a table with about 1.3 GB of table and TOAST storage. A repeated inspection reached its statement timeout. Existing migration lookups use a different JSON operator form, so one expression index must match both callers. **Expected behavior** Use a company-scoped indexed lookup. Keep prepared and finalized references, the exact text comparison, native issue references, and run order. Keep all source and recovery validation. **Steps to reproduce** 1. Retain many run profiles with saved workspace references and wide JSON fields. 2. Inspect a workspace with few matching companion runs. 3. Explain the company and saved-workspace selector. Without the new index, it can scan run history and read unrelated JSON values. **Paperclip version or commit** Baseline: `0e3fdebea8257bdff11573081c76b306f12db230`. **Deployment mode** Server with PostgreSQL. The local proof uses disposable PostgreSQL 18.1. The observed server plan used PostgreSQL 17.11. Related: [batched companion discovery in #19735](https://github.com/paperclipai/paperclip/pull/19735). The existing batching remains in place. The duplicate search found no open workspace index change. This branch also carries the isolated API route-summary correction shared with [#20370](https://github.com/paperclipai/paperclip/pull/20370). ## What Changed - Add one concurrent index on company ID and the saved native workspace ID expression. The index has no state, runtime, or status predicate. - Use nested JSON operators in companion discovery. Existing migration lookups already use this expression. Keep both accepted states and the same ordering. - Register the migration on the existing top-level migration path. Retain its advisory lock, interrupted index repair, and completion journal behavior. - Add a real PostgreSQL migration and ordered-result test. Update the existing companion query counter for the equivalent SQL form. - Generate the schema snapshot and retain the five newest snapshots. - Describe the task case-list route as “Find the cases for a task.” This keeps the route on the first discovery search page. Search logic and test assertions are unchanged. ## Verification - `pnpm --filter @paperclipai/db exec vitest run src/heartbeat-workspace-companion-index.test.ts --maxWorkers=1`: **1 passed**. It builds the concurrent index through the canonical migrator, checks index validity, preserves prepared/finalized and cross-issue/null-issue results, excludes foreign and malformed references, and checks one journal entry after a second migration call. - `pnpm --filter @paperclipai/server exec vitest run src/services/remote-workspace-online-source.test.ts -t 'discovers all Git companions' --maxWorkers=1`: **1 passed; 86 not selected**. This uses the real source owner and retains finalized recovery holds, company isolation, and a fresh obligation between inspections. - `pnpm --filter @paperclipai/db typecheck`, migration numbering/safety checks, and `git diff --check`: **passed**. - One small local SQL comparison used the captured baseline selector, the changed selector, 3,012 synthetic rows, about 37.8 MB of table storage, and the new expression index. Ordered results were identical. One client timing changed from **8.70 ms to 0.86 ms**. This is one local warm-cache comparison, not a server latency claim. Hosted improvement is **unverified**. - Initial setup attempts failed before the affected test ran: registry access, local tsx IPC, and a missing SDK build. The canonical Node 24.22.2/pnpm 9.15.4 setup and SDK prerequisite resolved these setup failures. The local SQL timing client used Node 26.4.0; the focused application tests used Node 24.22.2. - [The first CI run](https://github.com/paperclipai/paperclip/actions/runs/42705129724/job/129460702073) failed the inherited case-history API first-page search assertion. The same failure was reproduced on the unchanged base: the route ranked sixth for “case for task.” The isolated route-summary correction from #20370 passed the same three assertions. The search algorithm and assertions were not changed. - No public command changes require a documentation update. The schema and migration record the added index. No hosted DDL or deployment was performed for this PR. - Final head `c50101dabf46ade42b545d2051d724d93f413ccd`: [full CI](https://github.com/paperclipai/paperclip/actions/runs/42707623920) passed with 60 successful checks and three configured skips. [Fresh Greptile review](https://github.com/paperclipai/paperclip/pull/20372#issuecomment-6752305627) is 5/5 on this head with no open threads. ## Risks - The index adds storage and write cost when a run profile changes. - A concurrent build reads the table and can wait for old transactions. The existing migration path runs it outside a transaction and can repair an interrupted invalid index. - Existing nested-operator lookups can use the index. The companion selector needs this code change to use it. Other JSON path queries are unchanged. - The small local result does not establish end-to-end import speed or PostgreSQL 17 hosted latency. Fresh deployed measurement remains necessary. ## Model Used OpenAI Codex, GPT-6 family. The exact runtime model ID and context window are not exposed in this session. Used reasoning, code editing, shell tools, and local PostgreSQL tests. ## Checklist - [x] I have included a thinking path that traces from project context to this change - [x] I have specified the model used (with version and capability details) - [x] I have checked ROADMAP.md and confirmed this PR does not duplicate planned core work - [x] I have searched GitHub for duplicate or related PRs and linked them above - [x] I have either (a) linked existing issues with `Fixes: #` / `Closes #` / `Refs #` OR (b) described the issue in-PR following the relevant issue template - [x] I have not referenced internal/instance-local Paperclip issues or links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip` URLs) - [x] My branch name describes the change (e.g. `docs/...`, `fix/...`) and contains no internal Paperclip ticket id or instance-derived details - [x] I have run tests locally and they pass - [x] I have added or updated tests where applicable - [x] I have updated relevant documentation to reflect my changes - [x] I have considered and documented any risks above - [x] All Paperclip CI gates are green - [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups - [x] I will address all Greptile and reviewer comments before requesting merge --------- Co-authored-by: Paperclip <noreply@paperclip.ing> |
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DottaandPaperclip
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6583ffa3b4 |
fix(workspaces): migrate task directories with legacy shared mode (#20371)
## Thinking Path > - Paperclip is the open source app people use to manage AI agents for work. > - A control-plane replacement must restore saved work without its old disk. > - Online workspace migration saves a guarded physical source to object storage. > - Some older task directories have shared workspace mode in their saved metadata. > - Their physical paths still identify one company and one source issue. > - The selected-source check rejects that mode even though the alias check accepts it. > - This pull request admits the old mode under the same physical-source and writer guards. ## Linked Issues or Issue Description Refs #18835 and #19873 for workspace preservation and source-fence ownership. Related #11914 addresses mode selection during workspace reuse. This branch also carries the one-line API discovery correction shared with #20370. The search found no duplicate fix for this migration admission path. **What happened?** Online migration rejects an ordinary local task directory when its row has legacy `shared_workspace` mode. The directory can have the exact managed company and source-issue path, with no repository or branch. The selected-source check requires `isolated_workspace`, while its existing alias check permits both modes. **Expected behavior** Admit either saved mode only when the same physical path, company, source issue, aliases, lifecycle state and writer checks prove a safe source. Preserve the saved mode. Do not require global maintenance. **Steps to reproduce** 1. Create a `local_fs`, `project_primary` workspace with `shared_workspace` mode, a source issue, and a null provider reference. 2. Put its files at the managed `isolated-workspaces/<company>/<sourceIssue>` path. 3. Inventory online migration. The previous code reports that the source is unproven. 4. With this fix, migrate through the existing owner and restore the saved archive. **Paperclip version or commit** Base: `0e3fdebea8257bdff11573081c76b306f12db230` from freshly fetched master. **Deployment mode** Online local-filesystem workspace migration with durable snapshots. ## What Changed - Permit `shared_workspace` beside `isolated_workspace` in the existing physical task-source admission check. All other checks remain in their existing owners. - Extend the existing migration and archive-restore fixture with the legacy shared-mode task path and null provider reference. - Use the truthful task-case lookup summary “Find the cases for a task”. This restores its existing first-page discovery contract without changing search scores, pagination or tests. ## Verification - Canonical worktree preflight passed in 26.2 seconds with cached Node 24 and pnpm 9.15.4. The existing SDK dependency preparation completed before the server tests. An initial direct test attempt could not resolve the unbuilt SDK and executed no test cases. - **RED:** Against the previous admission rule, the original project-path fixture passed and the new task-path variant failed with `eligible: false`: 1 passed, 1 failed, 86 skipped, 13.58 seconds. - **GREEN:** All **88 tests** in `server/src/services/remote-workspace-online-source.test.ts` passed in **35.47 seconds** after the one-line fix. This includes migration, archive restore, foreign and mismatched source aliases, source-issue fencing, active execution, lifecycle, and publication-race controls. - Command: `node node_modules/vitest/vitest.mjs run server/src/services/remote-workspace-online-source.test.ts --maxWorkers=1 --fsModuleCache` under Node 24. - `git diff --check` passed. Tests used disposable PostgreSQL and a local object-storage provider. Hosted migration acceptance remains separate. - Required CI [attempt 1](https://github.com/paperclipai/paperclip/actions/runs/42704874763/attempts/1) failed on previous head `c69ea90bc0f2f18707336004598e2429f590790d`. [Server shard 12](https://github.com/paperclipai/paperclip/actions/runs/42704874763/job/129459250886) failed `case-history-api-discovery.test.ts:14`: the first five results for `case for task` did not include `GET /api/issues/{issueId}/cases`. This test source is unchanged in this PR. The dependent final verify gate failed. The attempt remains a nonpass; no retry has been requested. - The shared API discovery diagnosis reproduced the existing lookup route at rank six. The summary omitted a query term. The correction from #20370 changes only that truthful summary. On final head `0d645370545130a8a835da8c1a77030562b29049`, the unchanged three-case API discovery regression passed in **10.64 seconds**. The 88-case workspace proof above remains valid for its unchanged source and fixture inputs; it was not rerun. - Final head `0d645370545130a8a835da8c1a77030562b29049`: [fresh required CI](https://github.com/paperclipai/paperclip/actions/runs/42707521663) **passed** at 22:13:53 UTC on November 9. All 51 workflow jobs are accounted for: 49 successful and 2 skipped. The [final verify aggregate](https://github.com/paperclipai/paperclip/actions/runs/42707521663/job/129476327386) passed. The exact-head rollup and classic Snyk status are successful, with no failed or pending checks. - Fresh Greptile review is **5/5** for this final head, with no open inline threads. Ponytail's **5/5** review covers previous head `c69ea90bc0f2f18707336004598e2429f590790d`; it is historical evidence for the unchanged workspace patch, not a final-head review. The old failed CI attempt remains recorded above. ## Risks - This admits a previously refused saved metadata shape. The physical directory must still match the company and original source issue. The alias check still rejects a different issue on that task path. - Source, lifecycle, task and active-run fences are unchanged. No live metadata is rewritten to gain admission. Saved workspace modes and snapshot formats carry forward; no schema or command changes are needed. ## Model Used OpenAI Codex, GPT-6.1 Sol (`gpt-6.1-sol`), with reasoning, repository tools and code execution. Context-window size is not exposed by the runtime. ## Checklist - [x] I have included a thinking path that traces from project context to this change - [x] I have specified the model used (with version and capability details) - [x] I have checked ROADMAP.md and confirmed this PR does not duplicate planned core work - [x] I have searched GitHub for duplicate or related PRs and linked them above - [x] I have either (a) linked existing issues with `Fixes: #` / `Closes #` / `Refs #` OR (b) described the issue in-PR following the relevant issue template - [x] I have not referenced internal/instance-local Paperclip issues or links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip` URLs) - [x] My branch name describes the change (e.g. `docs/...`, `fix/...`) and contains no internal Paperclip ticket id or instance-derived details - [x] I have run tests locally and they pass - [x] I have added or updated tests where applicable - [x] I have updated relevant documentation to reflect my changes - [x] I have considered and documented any risks above - [x] All Paperclip CI gates are green - [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups - [x] I will address all Greptile and reviewer comments before requesting merge --------- Co-authored-by: Paperclip <noreply@paperclip.ing>canary/v2026.1109.0-canary.17 |
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DottaandPaperclip
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02bfe71a6b |
fix(ui): keep new-task composer stable during submission (#20365)
## Thinking Path > - Paperclip is the open source app people use to manage AI agents for work. > - People use the New task dialog to send work to an agent. > - The dialog uses the shared task composer. > - A send request added an empty header with a bottom margin. > - That margin increased the composer height by 12 pixels. > - This pull request shows the header only when it has content. > - The composer keeps its size and position while the request runs. ## Linked Issues or Issue Description **What happened?** The New task composer grew by 12 pixels when a person sent a task with a description and no separate title. On desktop, the centered dialog moved up by 6 pixels and the editor moved down by 6 pixels. On mobile, the editor moved down by 12 pixels. **Expected behavior** The composer, editor, and dialog must keep their size and position while the task request runs. **Steps to reproduce** 1. Open New task. 2. Enter a task description without a separate title. 3. Send the task while the create request is still pending. 4. Compare the composer and editor bounds before and after the send. **Paperclip version or commit** Reproduced on `0e3fdebea8` in the production NewIssueDialog component through its existing Storybook story. **Deployment mode** Local source checkout. The browser check uses fixture requests and starts no agent runs. No duplicate fix was found in the open PR and issue search. Related open PR #19725 changes keyboard and pinch-zoom sizing; it does not change the empty header during a task send. ## What Changed - Keep the header absent during a normal send when it has no title, subtask context, or notice. - Keep the existing title, subtask context, connection retry notice, and error message. - Extend the submit test to check stable composer sections for description-only tasks, titled tasks, and subtasks. ## Verification - `pnpm exec vitest run ui/src/components/NewIssueDialog.test.tsx ui/src/components/task-chat/TaskChatComposer.test.tsx`: 253 tests passed. - The new description-only regression failed on the original code because an empty header appeared. It passed after the fix. The title and subtask cases passed in both versions. - Chromium browser check at viewport widths 1280 and 390: the original composer grew by 12 pixels. After the fix, all measured bounds for the composer, editor, and dialog stayed equal before and during the send. - `pnpm check:token-gates`: passed. - `git diff --check`: passed. - No documentation change is needed. The task creation contract stays the same. - The worktree preflight installed dependencies but could not build Runner because Cargo is absent. UI verification completed. [CI passed](https://github.com/paperclipai/paperclip/actions/runs/42702272345) for `53aa01c169559da1b31fd224c60ebeabd4ccf9c5`. It covers typecheck, build, general tests, and all eight end-to-end test shards. ## Risks - Low risk. The change only controls an empty header during a normal send. Existing tests cover connection retry and error notices. - No API, database, dependency, or design token changes. ## Model Used - OpenAI GPT-6 (Codex), with reasoning, tool use, and code execution. The session does not expose a more specific backend model ID or context window size. ## Checklist - [x] I have included a thinking path that traces from project context to this change - [x] I have specified the model used (with version and capability details) - [x] I have checked ROADMAP.md and confirmed this PR does not duplicate planned core work - [x] I have searched GitHub for duplicate or related PRs and linked them above - [x] I have either (a) linked existing issues with `Fixes: #` / `Closes #` / `Refs #` OR (b) described the issue in-PR following the relevant issue template - [x] I have not referenced internal/instance-local Paperclip issues or links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip` URLs) - [x] My branch name describes the change (e.g. `docs/...`, `fix/...`) and contains no internal Paperclip ticket id or instance-derived details - [x] I have run tests locally and they pass - [x] I have added or updated tests where applicable - [x] I have updated relevant documentation to reflect my changes - [x] I have considered and documented any risks above - [x] All Paperclip CI gates are green - [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups - [x] I will address all Greptile and reviewer comments before requesting merge Co-authored-by: Paperclip <noreply@paperclip.ing> |
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Nicky LeachandClaude Opus 5.5
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0e3fdebea8 |
perf: remove repeated reads and checks from run preparation (#20358)
## Thinking Path > - Paperclip is the open source app people use to manage AI agents for work > - Before each run starts, Core prepares the run: it opens the run log, resolves skills, and prepares the AI runtime > - Every run pays this preparation time before the agent can begin, for a new task or a follow-up, on a cold or a warm computer > - A trace on a hosted test deployment showed some preparation steps that repeat a read or a check that a later step does again > - This pull request removes three of these repeated steps and keeps the check that each one duplicated > - The benefit is that each run starts sooner, with no new mechanism and no change to what a run can see or write ## Linked Issues or Issue Description **What existing behavior does this improve?** Run preparation (`task.prepare`). On a hosted test deployment it takes about 2.8 to 3.6 s. Skills preparation has a P50 of 275 ms (1,161 ms on a deployment with more skills and projects). `heartbeat.prepare.run_output` takes 386 to 724 ms. **Subsystem affected** Run logs in object storage (`object-byte-journal`, `object-run-log-store`) and runtime skill delivery (`company-skills`, `skill-execution-content`). **Current behavior** - An object journal claim is preceded by a head read. Its only use is to give the current owner to `claim()`. `claim()` then reads the head again, and it rejects the claim only when the two reads differ. The run log, provider trace capture, and run evidence migration all do this. - Run log `begin` reads the source-prefix proof object for every claim. For a new run log, no proof can exist, so the read always returns "missing". - Each delivered skill version calls `withVersion`, which authorizes the skill again for the run's actor. The skill row was read with the same actor's visibility condition in the same call. With an agent actor this repeats the company source and project permission reads once per version. **Proposed behavior** - `claim()` reads the head once. It still refuses a deleted journal. The conditional head write still rejects any change after that read, and a stale writer is still fenced. - `begin` does not read a proof for a first claim (generation 1). A resumed log still reads and validates its proof, so a changed or malformed proof still fails closed. - Runtime skill delivery authorizes each skill once, when it reads the selected rows. Other callers of `withVersion` keep their own check. **Reason and benefit** Each removed step protects nothing that a later step does not protect again: - Head read: the claim builds on its own head read, and the conditional write enforces it. - Proof read: a proof is written only by a writer that holds this log's head. The journal never removes a head (deletion leaves a tombstone that `claim()` refuses). So a first claim cannot find a proof. - Skill check: every caller of `materializeVersionSnapshot` passes a row that it read through the same actor's visibility condition (`readFullSkillRows`, `getById`, `listFull`). Expected saving per run: two object-storage GETs on `run_output` (about 100 ms each on the trace), and the per-version visibility reads in skills preparation (4 versions per run on the test deployment, about 388 ms per version on a heavier deployment). **Breaking changes** None. `claim()` no longer takes `expectedOwner`. It is an internal API with three callers in this repository, all updated. Refs #20284 (it made run-log tail reads parallel and cached; this change covers the begin path). ## What Changed - `object-byte-journal`: remove the `expectedOwner` input and comparison from `claim()`. Remove the extra head read in its three callers (run log `begin`, provider trace capture, run evidence migration). - `object-run-log-store`: `begin` reads the source-prefix proof only when the claimed head has `generation > 1`. - `skill-execution-content`: split `withVersion` into the access check and `withReadableVersion`. `withVersion` keeps the check for its other callers. - `company-skills`: `materializeVersionSnapshot` uses `withReadableVersion`, because each of its callers already read the skill row under the actor's visibility condition. - Tests: - A new run log `begin` reads `head.json` once and reads no proof. A resumed log reads `head.json` once and reads its proof once. - Runtime skill delivery for an agent actor does no per-version source permission reads. ## Verification - `cd server && npx vitest run src/services/object-byte-journal.test.ts src/services/object-run-log-store.test.ts src/services/object-run-log-store-tail-read.test.ts src/services/run-log-store.test.ts src/services/provider-trace-object-store.test.ts` - `cd server && npx vitest run src/__tests__/company-skills-runtime-selection.test.ts src/__tests__/company-skills-runtime-concurrency.test.ts src/__tests__/heartbeat-runtime-skills.test.ts src/__tests__/company-skills-service.test.ts src/__tests__/managed-skill-content.test.ts` (embedded Postgres) - `cd server && pnpm run typecheck` - Each new test fails on the base commit: the run log test sees 2 head reads and 1 proof read; the skill test sees 1 source permission read per delivered version. - Existing tests still pass for: stale-writer fencing after a takeover, a deleted journal that refuses a claim, a malformed proof that fails closed, and a denied project-scoped skill that is not delivered. - I did not run the full `pnpm test:run`. CI covers it. ## Risks - Low. Two concurrent claims of the same journal: before, the second claim failed when the first published between its two head reads. Now the later claim takes over, and the earlier writer's next append fails with a conflict. This is the same result as when the later claim starts after the first publish. Writer authority (`assertAuthority`) is unchanged. - A skill whose visibility is revoked in the moment between its row read and its materialization in the same call is still delivered for that run. This was already true for a revocation just after the old per-version check. > For core feature work, check [`ROADMAP.md`](ROADMAP.md) first and discuss it in `#dev` before opening the PR. Feature PRs that overlap with planned core work may need to be redirected — check the roadmap first. See `CONTRIBUTING.md`. ## Model Used - Claude Opus 5.5 (`claude-opus-5-5`) in Claude Code, with tool use (shell, file edits, test runs). ## Checklist - [x] I have included a thinking path that traces from project context to this change - [x] I have specified the model used (with version and capability details) - [x] I have checked ROADMAP.md and confirmed this PR does not duplicate planned core work - [x] I have searched GitHub for duplicate or related PRs and linked them above - [x] I have either (a) linked existing issues with `Fixes: #` / `Closes #` / `Refs #` OR (b) described the issue in-PR following the relevant issue template - [x] I have not referenced internal/instance-local Paperclip issues or links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip` URLs) - [x] My branch name describes the change (e.g. `docs/...`, `fix/...`) and contains no internal Paperclip ticket id or instance-derived details - [x] I have run tests locally and they pass - [x] I have added or updated tests where applicable - [ ] I have updated relevant documentation to reflect my changes - [x] I have considered and documented any risks above - [x] All Paperclip CI gates are green - [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups - [x] I will address all Greptile and reviewer comments before requesting merge 🤖 Generated with [Claude Code](https://claude.com/claude-code) --------- Co-authored-by: Claude Opus 5.5 <noreply@anthropic.com> |
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DottaandClaude Opus 5.5
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380b3d49c0 |
fix(api): make case lookup and audit history discoverable to agents (#20354)
## Thinking Path > - Paperclip is the open source app people use to manage AI agents for work > - Cases are an experimental saved record with facts, audit history and handoffs, beside the documents on their tasks > - Agents find REST operations with `search_api`, which ranks catalog entries by words in the method, path and summary > - The case read routes had generated summaries such as "GET cases events" and one generic description > - So a chat agent that searched "list company cases" or "case facts history" did not get any case read route on the first page > - In a chat eval, the agent wanted to check the case for "who changed the diagnosis", could not find it, and answered from task document revisions only > - This pull request gives the case read routes real summaries and descriptions, and tells chat agents where a task's case and its fact-change history are > - The benefit is that agents can find and cite a case's audit history when a person asks about it ## Linked Issues or Issue Description Refs #20265 (case page link guidance for chat agents). **What happened** A person asked a chat agent "Who changed the diagnosis, and what did it say before?" about a case. The agent called `search_api` with "cases list facts history" and "list company cases". The case list, task-to-case lookup and case events routes were not on the first result page. The agent said "Not found", skipped the case audit and answered from the task document revisions only. It did not mention the case fact change or link the case. **Expected behavior** An agent that searches for a company's cases, a task's case or a case's fact-change history finds the matching route on the first page. The catalog says that a `fields_changed` event records who changed the facts and when, but not the previous values. **Steps to reproduce** 1. Enable Cases. 2. Call `searchRunnerApi({ query: "list company cases" })`. 3. See that `GET /api/companies/{companyId}/cases` is not in the five results. The same is true for `GET /api/cases/{id}/events` with "cases list facts history". ## What Changed - `server/src/routes/experimental-api-paths.ts`: add `experimentalApiDocs` with summaries and descriptions for the case list, task-to-case lookup, case read, case events and case document revision routes. - `server/src/routes/openapi.ts`: use those summaries and descriptions when present. Other experimental routes keep the generated summary. The experimental notice stays in every description. - `server/src/services/agent-conversations.ts`: the Cases chat directive now names `GET /api/issues/{issueId}/cases` to find a task's case and `GET /api/cases/{id}/events` for who changed its facts. - `server/src/__tests__/case-history-api-discovery.test.ts`: regression test with the queries from the failed run, and a check on the directive. ## Verification - `cd server && pnpm exec vitest run src/__tests__/case-history-api-discovery.test.ts` fails on master (2 failures) and passes with this change. - `cd server && pnpm exec vitest run src/services/heartbeat/task-markdown.test.ts src/services/native-runtime/runner-api.test.ts src/__tests__/openapi-routes.test.ts src/__tests__/skill-import-discovery.test.ts src/__tests__/primary-agent-guidance.test.ts`: 2148 tests pass. - `npx tsc --noEmit -p server` reports no errors in the changed files. - A live chat eval (`cases.case-history`) runs on a branch with this commit. ## Risks - Low risk. The change edits catalog text and chat guidance only. Route behavior and authorization do not change. - Search ranking changes for queries that use these words. Case routes now rank higher for case queries. ## Model Used - Anthropic Claude Opus 5.5 (`claude-opus-5-5`), with tool use and code execution in Claude Code. ## Checklist - [x] I have included a thinking path that traces from project context to this change - [x] I have specified the model used (with version and capability details) - [x] I have checked ROADMAP.md and confirmed this PR does not duplicate planned core work - [x] I have searched GitHub for duplicate or related PRs and linked them above - [x] I have either (a) linked existing issues with `Fixes: #` / `Closes #` / `Refs #` OR (b) described the issue in-PR following the relevant issue template - [x] I have not referenced internal/instance-local Paperclip issues or links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip` URLs) - [x] My branch name describes the change (e.g. `docs/...`, `fix/...`) and contains no internal Paperclip ticket id or instance-derived details - [x] I have run tests locally and they pass - [x] I have added or updated tests where applicable - [x] I have updated relevant documentation to reflect my changes - [x] I have considered and documented any risks above - [ ] All Paperclip CI gates are green - [ ] Greptile is 5/5 with no open P2s, recommendations, or follow-ups - [x] I will address all Greptile and reviewer comments before requesting merge 🤖 Generated with [Claude Code](https://claude.com/claude-code) --------- Co-authored-by: Claude Opus 5.5 <noreply@anthropic.com> |
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DottaandClaude Opus 5.5
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1baac27888 |
feat(server): chat bootstrap reads for instant task opens (#20355)
## Thinking Path > - Paperclip is the open source app people use to manage AI agents for work > - People open tasks from the task list to see the latest messages and to reply to an agent > - Before the task chat shows its first frame, it waits for about ten separate reads: the issue, recent comments, comment input facts, recent activity, recent runs, interactions, attachments, live runs and the active run > - On a busy instance each read waits for the database, and the slowest read decides when the chat appears. A cold open takes 1.5–4 s on staging > - This pull request adds one read that returns all of that data for up to ten tasks, in the same JSON shapes as the existing endpoints, plus a single-task form > - The benefit is that the task list can preload its top tasks, and a cold open needs one round trip instead of about ten. The UI change is in the stacked pull request ## Linked Issues or Issue Description **Problem or motivation** A task open waits for about ten reads. With the database under load, these reads queue, and a cold open takes seconds. The list cannot preload a task cheaply, because each task costs about ten requests. **Proposed solution** `GET /api/companies/:companyId/issues/chat-bootstrap?ids=` returns the first-frame data for up to 10 tasks. `GET /api/issues/:ref/chat-bootstrap` returns it for one task. Each field equals the matching single endpoint's JSON exactly. **Alternatives considered** - Prefetch the existing endpoints for each list row. For 30 rows this sends about 210 requests to a database that is already the bottleneck. - A new projection with different shapes. This would duplicate client merge logic, and freshness rules could drift. **Roadmap alignment** This is part of the task-loading performance plan in #20276. It follows #20277, #20284 and #20286. ## What Changed - `packages/shared`: - `ISSUE_CHAT_BOOTSTRAP_MAX_IDS` (10). - `issueChatBootstrapQuerySchema`: UUIDs or identifiers, normalized, deduplicated and strict. - The `IssueChatBootstrap` and `IssueChatBootstrapItem` types. - New `server/src/services/issue-chat-bootstrap.ts`: - Resolves the refs inside the company and applies the `issue:read` decision to each task. - Reads the tasks with a concurrency of 2, and returns them in request order. - `server/src/routes/issues.ts`: - The core issue read and the recent-comments read are now shared helpers, so the bootstrap and the single endpoints use the same code. The core view keeps its Server-Timing header. - Adds the batch route and the single-task route. - Excludes the single-task route from the issue ETag middleware, so a fetch without validators always gets a 200 with `Cache-Control: private, no-store`. - New `server/src/services/issue-run-presence.ts`: - The live-runs and active-run payload builders, moved from `agents.ts` without change. - The existing routes call them, and their behavior is unchanged. - `server/src/routes/openapi.ts`: entries for both routes. ## Verification - `cd server && npx vitest run src/__tests__/issue-chat-bootstrap-routes.test.ts` passes 17 tests. They run on embedded Postgres with privacy enforcement on. They cover: - Each field deep-equals its single endpoint's JSON, for an ordinary task and for a conversation task. - The single-task route equals the batch item, by UUID and by identifier. It is never answered with a 304. - Items keep the request order, with UUIDs and identifiers mixed. - Private, other-company, missing and unknown tasks are omitted, and none of their data appears. The single-task route returns 404 for them. - Malformed, extra or repeated parameters return 400. More than 10 ids also return 400. - A task-bridge key gets 403. - A 10-task request writes nothing: no inserts, updates or deletes, and no activity-log or comment changes. - The issue, agent, activity, live-run, cold-open, summaries, ETag and OpenAPI route suites pass: 56 files, 1,771 tests. - `cd server && pnpm typecheck` passes. - Query cost, local embedded Postgres, one 10-task request: about 49 SQL statements per task, 55–130 ms in total. A test fails if it goes above 60 per task. ## Risks - **Database load:** the stacked UI preloads up to 30 tasks, about 1,500 statements at idle time. This is the same work as opening those tasks, but it is done before the person clicks. The work runs in sequential requests of 10, with 2 tasks at a time. Most of the cost is existing run decoration. Live runs and the active run decorate the same running run, so that work runs twice. Sharing it is a follow-up. - **Stricter access:** live runs and the active run now apply the `issue:read` policy inside this endpoint. The existing routes keep their company-only check. - Hidden tasks are returned, as `GET /issues/:id` returns them. - No migration and no persisted-state change. ## Model Used - Claude Opus 5.5 (`claude-opus-5-5`), Anthropic, used in Claude Code with tool use (shell, browser automation, file editing, subagents). ## Checklist - [x] I have included a thinking path that traces from project context to this change - [x] I have specified the model used (with version and capability details) - [x] I have checked ROADMAP.md and confirmed this PR does not duplicate planned core work - [x] I have searched GitHub for duplicate or related PRs and linked them above - [x] I have either (a) linked existing issues with `Fixes: #` / `Closes #` / `Refs #` OR (b) described the issue in-PR following the relevant issue template - [x] I have not referenced internal/instance-local Paperclip issues or links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip` URLs) - [x] My branch name describes the change (e.g. `docs/...`, `fix/...`) and contains no internal Paperclip ticket id or instance-derived details - [x] I have run tests locally and they pass - [x] I have added or updated tests where applicable - [x] I have updated relevant documentation to reflect my changes - [x] I have considered and documented any risks above - [ ] All Paperclip CI gates are green - [ ] Greptile is 5/5 with no open P2s, recommendations, or follow-ups - [ ] I will address all Greptile and reviewer comments before requesting merge 🤖 Generated with [Claude Code](https://claude.com/claude-code) --------- Co-authored-by: Claude Opus 5.5 <noreply@anthropic.com> |
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|
DottaandPaperclip
|
282503b5b3 |
fix(ci): prepare native binaries for Runner chaos checks
## Thinking Path > - Paperclip is the open source app people use to manage AI agents for work. > - Release verification checks that Runner preserves work through faults and shutdown. > - A governed-wait recovery case now runs a real native Runner and a controlled Codex process. > - That case needs the workspace debug binaries before the chaos suite starts. > - The chaos workflow builds JavaScript contracts but does not build those native binaries. > - A clean release worker fails before it can verify recovery. > - This pull request builds the native prerequisites with the existing package command before the tests. ## Linked Issues or Issue Description Refs #20336, which added the real-Runner recovery case. Refs #20322, whose normal delivery exposed the missing prerequisite. Existing native test preparation and related chaos PRs were checked; no duplicate preparation repair was found. **What happened?** The [Cloud readiness chaos job](https://github.com/paperclipai/paperclip/actions/runs/42686564449/job/129397518634) failed on Core `c67909cb0f1fa973e0991ba068d9c8b2f8f64924`. The governed-wait recovery test tried to open `packages/paperclip-runner/runner/target/debug/paperclip-runnerd`, which did not exist. The job had installed dependencies and built eval contracts. It had not built native workspace binaries. **Expected behavior** The chaos job builds its native prerequisites before it starts the Runner fault tests. A build failure must fail the job. The existing recovery assertions must still execute. **Steps to reproduce** 1. Use a source checkout with JavaScript dependencies and contracts prepared but no Rust debug workspace binaries. 2. Run `src/native-session-runtime.test.ts` with the test name `settles a governed wait through real Runner shutdown after a missing Codex terminal`. 3. Observe a missing native artifact. On the hosted job it was the daemon. In the local reproduction, canonical JavaScript preflight had already built a release daemon, so the missing artifact was debug `fake-codex-app-server`. 4. Build the native workspace binaries and run the unchanged case again. **Paperclip version or commit** Hosted failure: `c67909cb0f1fa973e0991ba068d9c8b2f8f64924`. This branch is based on fresh master `8a6b08227484591a30a7adea3840f7e96755ed81`. **Deployment mode** GitHub Actions source readiness and reusable Runner chaos verification. ## What Changed - Run the existing `pnpm --filter @paperclipai/paperclip-runner build:rust` command before the Runner fault suites. This builds the locked native workspace binaries, including the daemon and controlled Codex server. - Extend the existing release-workflow contract tests to require unconditional native preparation after dependency installation and before the real-Runner suite. ## Verification - The new workflow contract failed against the previous job setup. It passed after adding the prerequisite. - The unchanged governed-wait case failed with a missing debug fake-Codex binary before native preparation: 1 failed, 251 intentionally skipped, 2.92 seconds. - Complete canonical worktree preflight prepared the debug binaries in 10.8 seconds. The unchanged real-Runner case then passed: 1 passed, 251 intentionally skipped, 2.03 seconds. It verifies saved work, accepted handoff, confirmed provider exit, durable state and a single admitted turn. - After rebasing onto refreshed master, the exact case passed again in **1.84 seconds**. The three affected workflow contracts also passed. - **412 existing workflow, routing and native-cache contract tests passed** in 26.58 seconds. Their input files did not change in the rebase. - `actionlint -oneline -shellcheck= -pyflakes=` and `git diff --check` passed. - The test uses the real local Rust Runner and a controlled local provider. It does not call a live model or modify a hosted instance. - The full local chaos suite was not run. Hosted execution of the changed reusable chaos job remains a postmerge check. - Required CI for final head `dd751732bff287dbeb05ddadd25c3370c817dd7a`: [workflow attempt 2](https://github.com/paperclipai/paperclip/actions/runs/42689605454/attempts/2) **passed** at 20:58:20 UTC on November 9: all 53 jobs accounted for, 52 successful and 1 skipped. The fresh [Build job](https://github.com/paperclipai/paperclip/actions/runs/42689605454/job/129419966076), [server shard 4](https://github.com/paperclipai/paperclip/actions/runs/42689605454/job/129419970716), and [final verify aggregate](https://github.com/paperclipai/paperclip/actions/runs/42689605454/job/129431023346) all passed. The exact-head check rollup and classic Snyk status are successful, with no failures or checks still pending. - Attempt 1 remains a nonpass: the clean public npm install requested an AWS SDK package version before that version was published, and server shard 4 exceeded an existing five-second completion poll before its test retry collided with a retained fixed-name environment fixture. The unchanged exact server case passed locally. One bounded failed-job retry reran both failed leaves; neither the fixture nor assertions were changed. The initial cause of the five-second completion miss has not been established. - Fresh exact-head Greptile review is **5/5** with no open inline threads. Ponytail is **4/5, Ship**, with two explicitly nonblocking suggestions: a separate native-build step deadline and tighter workflow-job scoping in the contract test. The native build remains bounded by the existing job deadline; the current contract proves prerequisite ordering in the affected workflow. Both suggestions are retained for follow-up rather than changing this final tested revision. ## Risks - A cold native build adds compilation time and disk use to the chaos worker. The existing job timeout remains 40 minutes on the protected AWS route and 45 minutes on the hosted route. - Native build failures stop the job. The test selection, assertions, permissions and source-proof gates remain in force. - This change addresses the observed missing artifacts. Earlier runner-loss waves and the separate managed-credential assertion remain nonpasses; this change does not establish their causes or repair them. ## Model Used OpenAI Codex, GPT-6.1 Sol (`gpt-6.1-sol`), with reasoning, repository tools and code execution. Context-window size is not exposed by the runtime. ## Checklist - [x] I have included a thinking path that traces from project context to this change - [x] I have specified the model used (with version and capability details) - [x] I have checked ROADMAP.md and confirmed this PR does not duplicate planned core work - [x] I have searched GitHub for duplicate or related PRs and linked them above - [x] I have either (a) linked existing issues with `Fixes: #` / `Closes #` / `Refs #` OR (b) described the issue in-PR following the relevant issue template - [x] I have not referenced internal/instance-local Paperclip issues or links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip` URLs) - [x] My branch name describes the change (e.g. `docs/...`, `fix/...`) and contains no internal Paperclip ticket id or instance-derived details - [x] I have run tests locally and they pass - [x] I have added or updated tests where applicable - [x] I have updated relevant documentation to reflect my changes - [x] I have considered and documented any risks above - [x] All Paperclip CI gates are green - [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups - [x] I will address all Greptile and reviewer comments before requesting merge Co-authored-by: Paperclip <noreply@paperclip.ing> |
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DottaandClaude Opus 5.5
|
653ab8b18f |
fix(chat): answer "my inbox" from the person's Mine list (#20334)
## Thinking Path
> - Paperclip is the open source app people use to manage AI agents for
work
> - Agent Chat lets a person ask an agent about their own work, such as
"what in my inbox needs my attention?"
> - Agents find API routes through the agent API catalog, which is built
from the OpenAPI registry
> - The catalog described `GET /api/agents/me/inbox/mine` as the current
agent's assigned items and listed no `userId` parameter. The skill
reference for the route is keyed with `?userId={}`, so it never attached
to the catalog entry
> - A chat agent called the route without `userId`, got 400, and then
answered from an unscoped company task search. It named company work
that is not in the person's inbox and did not link the person's Mine
list
> - This pull request documents the route as the person's Mine list with
a required `userId`, and adds one chat guidance paragraph for inbox
questions
> - The benefit is that inbox answers use the person's own task scope
and link their Mine list
## Linked Issues or Issue Description
**What happened**
A person asked a CEO chat agent: "What in my inbox needs my attention
today?" The agent called `GET /api/agents/me/inbox/mine` without
`userId` and got 400. Then it listed every company task, including an
unrelated agent-created maintenance task. It said the person's inbox was
board-only and did not link the Mine list.
**Expected behavior**
The agent reads the person's Mine list with `GET
/api/agents/me/inbox/mine?userId=<person>`. It answers from those tasks
only, links each task it cites, and links the Mine list at
`/<prefix>/inbox/mine`. If the read fails, it says so and links Mine.
**Steps to reproduce**
1. As a board user, participate in some tasks. Let an agent create an
unrelated task in the same company.
2. In Agent Chat with the CEO, ask "What in my inbox needs my attention
today?"
3. The agent calls the Mine route without `userId` (400) and lists all
company tasks.
## What Changed
- `server/src/routes/openapi.ts`: `GET /api/agents/me/inbox/mine` now
has a summary and description that say it is a person's Mine list, not
the agent's own queue. It documents the required `userId` query
parameter and the optional `status` parameter, and the 400 response.
- `server/src/services/agent-conversations.ts`: one chat guidance
paragraph. For inbox questions, read the Mine route with the
`authorUserId` of the person's message, answer from those tasks only,
and link `[Mine](/<prefix>/inbox/mine)` (it opens the Mine view in every
layout). If the read fails, say so and link Mine.
- Regression tests in `openapi-routes.test.ts` and
`agent-conversations.test.ts`.
## Verification
- `npx vitest run src/__tests__/openapi-routes.test.ts
src/__tests__/agent-conversations.test.ts
src/__tests__/heartbeat-list.test.ts` (in `server/`): 107 passed. The
two new tests fail without the source change.
- `npx vitest run src/services/native-runtime/runner-api.test.ts`: 2075
passed.
- Live chat eval `inbox-search.show-my-work` on the eval candidate with
this commit: see the comment below for the run result.
## Risks
- Low risk. The change is catalog text, one query schema in the OpenAPI
document, and one chat guidance paragraph. The route behavior does not
change.
- The chat prompt grows by about 500 characters.
## Model Used
- Anthropic Claude Opus 5.5 (`claude-opus-5-5`), tool use and code
execution in Claude Code.
## Checklist
- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have searched GitHub for duplicate or related PRs and linked
them above
- [x] I have either (a) linked existing issues with `Fixes: #` / `Closes
#` / `Refs #` OR (b) described the issue in-PR following the relevant
issue template
- [x] I have not referenced internal/instance-local Paperclip issues or
links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip`
URLs)
- [x] My branch name describes the change (e.g. `docs/...`, `fix/...`)
and contains no internal Paperclip ticket id or instance-derived details
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [ ] All Paperclip CI gates are green
- [ ] Greptile is 5/5 with no open P2s, recommendations, or follow-ups
- [x] I will address all Greptile and reviewer comments before
requesting merge
🤖 Generated with [Claude Code](https://claude.com/claude-code)
---------
Co-authored-by: Claude Opus 5.5 <noreply@anthropic.com>
|
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Devin FoleyandClaude Opus 5.5
|
90ec0b9673 |
fix(sentry): report a reviewed chat setup wait only after its retry decision (#20205)
A reviewed chat attestation that exhausts its short lock or delivery wait fails setup with reviewed_chat_execution_binding_not_ready, and the bounded retry then owns recovery. The failed-status write sent the Sentry report before the retry was scheduled, so a wait that the retry recovered still created an unexpected-failure event. The setup path now marks that write as pending and reports once after the retry decision. A scheduled retry keeps the failure local; an exhausted, unscheduled or failed retry decision still reports. Other setup failures keep their report on the failed-status write. Co-Authored-By: Claude Opus 5.5 <noreply@anthropic.com> |
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|
Dotta
|
98f49af70a |
feat: filter agents by model, status, harness, and connection (#20317)
Add shared filters to both All Agents layouts and views. Keep chart ancestors and bulk selections when filters hide agents. Use the same metadata for filter choices and table cells. Add tests and update the filter journey and design guidance. |
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DottaandClaude Opus 5.5
|
61c169753e |
test(chaos): fire planned faults at a fixed time after launch with --fault-after-seconds (#20345)
## Thinking Path > - Paperclip is the open source app people use to manage AI agents for work > - The restart chaos harness fires each task's fault at a seeded time inside the workload's window (R1: 20–90 s after launch) > - With a Paperclip-sized remote workspace on Daytona, preparation (sandbox clone and the initial snapshot save) takes longer than 90 s > - Every restart in a Daytona R1 wave therefore lands before the run resolves its runtime mode, so only the pre-resolution recovery path is ever tested > - This pull request adds `--fault-after-seconds`, which fires every planned fault at a fixed time after launch while keeping the rest of the seeded plan > - The benefit is that one seed can test a restart both during preparation and after native resolution ## Linked Issues or Issue Description **What happened?** Daytona R1 waves w-20261109T163514-s9913 and w-20261109T185009-s9950 restarted the controller at 43 s and 84 s. Both runs were still preparing their remote workspace, so the native recovery path for a real-size workspace was never exercised. **Expected behavior** An operator can choose when the fault fires relative to the task launch. **Actual behavior** The fault time could only come from the seeded workload window. ## What Changed - `--fault-after-seconds <n>` (5–3600) sets `faultAfterMs`. `planTasks` still draws the seeded fire time, so nonces, holds and triggers are unchanged, but it uses `faultAfterMs` for every planned fault except K13. - The option is rejected with storms and crash-point waves, which have no planned fault times. - README: one line under Options. ## Verification - `npx vitest run --config tests/restart-chaos/vitest.config.ts`: 259 passed. The new scheduler test fails before the change. It checks that every planned fault fires at 150 s, that the rest of the plan matches the same seed without the option, and that out-of-range or storm use is rejected. - `node scripts/typecheck-test-projects.mjs tests/restart-chaos`: clean. ## Risks - A fixed fault time can land after a fast task finishes, in which case the fault crosses no work for that task. The trigger is recorded as missed, as for any late fault. ## Model Used - Claude Opus 5.5 (`claude-opus-5-5`), Anthropic, with tool use and code execution in Claude Code. ## Checklist - [x] I have included a thinking path that traces from project context to this change - [x] I have specified the model used (with version and capability details) - [x] I have checked ROADMAP.md and confirmed this PR does not duplicate planned core work - [x] I have searched GitHub for duplicate or related PRs and linked them above - [x] I have either (a) linked existing issues with `Fixes: #` / `Closes #` / `Refs #` OR (b) described the issue in-PR following the relevant issue template - [x] I have not referenced internal/instance-local Paperclip issues or links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip` URLs) - [x] My branch name describes the change (e.g. `docs/...`, `fix/...`) and contains no internal Paperclip ticket id or instance-derived details - [x] I have run tests locally and they pass - [x] I have added or updated tests where applicable - [x] I have updated relevant documentation to reflect my changes - [x] I have considered and documented any risks above - [ ] All Paperclip CI gates are green - [ ] Greptile is 5/5 with no open P2s, recommendations, or follow-ups - [x] I will address all Greptile and reviewer comments before requesting merge 🤖 Generated with [Claude Code](https://claude.com/claude-code) --------- Co-authored-by: Claude Opus 5.5 <noreply@anthropic.com> |
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|
DottaandClaude Opus 5.5
|
7f55323abb |
fix(recovery): end a remote workspace epoch whose writer died during preparation (#20346)
## Thinking Path
> - Paperclip is the open source app people use to manage AI agents for
work
> - A task with a remote workspace prepares that workspace before the
run selects its runtime, and preparation marks the workspace epoch dirty
with the run as its writer
> - If the server is killed during preparation, the run never selected a
runtime and never started provider work, but the dirty epoch remains
> - Failed-workspace preservation, the path that resolves a dead
writer's dirty epoch, applies to native runs only, so nothing owned this
epoch
> - The dirty epoch kept the dead run's sandbox lease as a pending
export and held the workspace against the task's retry, so the task
never recovered
> - This pull request lets the ownership reconciler end such an epoch at
the last committed save
> - The benefit is that a restart during workspace preparation no longer
wedges the task
## Linked Issues or Issue Description
**What happened?**
In a restart-chaos wave on Daytona (a remote workspace that clones a
real repository), the controller was killed while each run's first
workspace save was in flight. That save is now settled by #20326. Each
run ended `process_lost` with a bounded retry, and both runs were still
in `execution_stage: preparing` with `runtime_mode_resolved_at: null`.
The workspace authority stayed `dirty: true`, `snapshotId: null`, with
the dead run as writer. The dead run's environment lease was proven
owner-gone but was refused by its settle as `workspace_export_pending`,
and the reconciler reported `I2_settled` violations. The retries stayed
`queued` until the test harness deleted the environment 21 minutes
later. Then they failed `remote_workspace_execution_required`, because
the environment was gone.
**Expected behavior**
When a writer dies before runtime selection, its unsaved files are only
the restored source and preparation output, because no agent turn ran.
Recovery must end that epoch at the last committed save, so the lease
settles and the retry restores the workspace into a new directory. A
writer that reached runtime selection must keep its existing recovery.
**Steps to reproduce**
1. Run a task whose agent uses Paperclip Runner with a remote sandbox
workspace.
2. Kill the server while the run is still preparing the workspace (for
example during its first save).
3. After the restart, the run ends `process_lost` and its retry is
queued, but the workspace stays dirty and owned by the dead run, the
lease stays active, and the retry never starts.
**Paperclip version or commit**
`master` at
|
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|
DottaandClaude Opus 5.5
|
8a6b082274 |
fix(api): send call_api mutations once when responseText asks only for the first window (#20344)
## Thinking Path > - Paperclip is the open source app people use to manage AI agents for work. > - Native agents use the `call_api` fallback tool for API operations that have no dedicated tool. > - `responseText` is an optional `call_api` argument. It returns a bounded text window of a GET response. > - The server rejects every `responseText` on a mutation, also a first-window request that cannot repeat the mutation. > - A native agent attached `responseText` to a company rename PATCH. It got the same 400 on each retry, and no call succeeded. > - The same call also had no `body`. A PATCH without a body changes nothing, but the route returns 200. With the first rejection removed, the agent could read that 200 as a completed rename. > - This pull request sends a mutation once when `responseText` asks only for the first window, and it rejects a PATCH without a body before dispatch. > - The benefit is that a valid mutation goes through on the first call, a later-page request still cannot repeat a mutation, and an empty PATCH cannot look like a successful update. ## Linked Issues or Issue Description Refs #18105. That open pull request keeps the 400 for all mutation `responseText` values and corrects its message. This pull request changes the same check. It accepts a first-window request and keeps a corrected 400 for a later page. Whichever pull request merges second must resolve this line. **What happened** A chat agent (OpenCode, `deepseek-v4.1-flash`) tried to rename its company with `call_api`. We recovered the exact arguments from the payload digest in the run events: `operationId: "PATCH /api/companies/{companyId}"`, `pathParams.companyId`, `query: {}` and `responseText: { limitBytes: 8192 }`. There was no `body`. The OpenCode MCP bridge validates the arguments with Ajv without `useDefaults`, and `8192` is not a default in any schema. Thus the model, not the bridge, sent `responseText`. The server returned "responseText requires a GET operation". The agent sent the identical call 10 more times and one identical branding PATCH. No call succeeded. A second chat case in the same cohort sent `responseText` on `POST /api/issues/{id}/inbox-archive` three times before it recovered. **Expected behavior** `responseText` with no offset or offset 0 changes only how the response is shown. The mutation must run once and return its response on the normal inline or saved-artifact path. A later page (`offsetBytes > 0`) must still fail before dispatch, because it would repeat the mutation. A PATCH without a body must fail before dispatch with a message that names `body`, the allowed fields and the received argument keys. **Steps to reproduce** 1. Call `executeRunnerApi` with `PATCH /api/companies/{companyId}`, a body, and `responseText: { limitBytes: 8192 }`. 2. Before this change: a 400, and no HTTP request. After: one PATCH with the body, and the normal response. 3. Call it with no body. Before: the request is sent and the route returns 200 with no change. After: a 400 that names `body`, and no HTTP request. ## What Changed - `validateRunnerApiCall`: for a non-GET operation, drop a first-window `responseText` (no offset or offset 0) and continue. A later page still returns 400 with "This request was not sent" and the reason. - New `assertRunnerApiDispatchable`: reject a new PATCH with a required request body when `body` and `files` are both absent. The message lists up to 12 allowed fields and the received argument keys. `call_api` runs it inside its receipt reservation, after saved and inherited receipts are read and before it writes a pending receipt, so a rejected call leaves no receipt. `executeRunnerApi` also runs it for direct callers. Recovery and receipt replay use only `validateRunnerApiCall`, so a body-less PATCH that an older server completed still returns its saved result. - Tests: first-window `responseText` on a PATCH dispatches once with the body (three window shapes). A later page is rejected with no dispatch. A body-less PATCH is rejected with no dispatch, and `body: {}` is still accepted. The catalog-wide dispatch tests now send `body: {}` for PATCH operations with a required body. ## Verification - Red: the 5 new or changed cases failed on `origin/master` (`runner-api.test.ts`). - Green: `npx vitest run src/services/native-runtime/runner-api.test.ts src/services/native-runtime/runner-tool-results.test.ts` passed (2,087 tests). `tests/runner-e2e/api-response-reading.test.ts` passed (14 tests). - `tsc --noEmit -p server/tsconfig.json`: no new errors. The error count is the same before and after this change; the remaining errors come from packages that are not built in this worktree. - Upgrade safety and receipts: a new integration test seeds a completed receipt for a body-less PATCH. `recover()` and a same-callId `execute()` return the saved result. A new body-less PATCH is rejected twice with the same error, writes no receipt and sends no HTTP request, and the corrected PATCH with that callId then succeeds. The test failed with the rule in `validateRunnerApiCall`, and again with the rule after the reservation; it passes now. `runner-api.integration.test.ts`, `runner-api.test.ts` and `native-case-tools.integration.test.ts` pass (2,164 passed, 2 skipped). - One paid chat eval run (GitHub Actions run 42680925312) with the first commit cherry-picked onto the eval branch: `companies.rename-company` passed. The agent sent one correct PATCH with a body, attributed to the agent. That run did not send `responseText`, so it does not exercise the changed path; the unit tests cover it. ## Risks - Behavior change: a mutation with a first-window `responseText` now runs. Before, it failed. The response comes back on the normal path (inline up to 24 KiB, else a saved artifact), not as a text window. - Behavior change: a caller that sent a PATCH with no body to a route with a required body now gets a 400. Such a call changed nothing before. POST, PUT and DELETE are not changed, because some of them have useful empty bodies. - No route, permission or company check changes. ## Model Used - Anthropic Claude Opus 5.5 (`claude-opus-5-5`), with tool use and code execution in Claude Code. ## Checklist - [x] I have included a thinking path that traces from project context to this change - [x] I have specified the model used (with version and capability details) - [x] I have checked ROADMAP.md and confirmed this PR does not duplicate planned core work - [x] I have searched GitHub for duplicate or related PRs and linked them above - [x] I have either (a) linked existing issues with `Fixes: #` / `Closes #` / `Refs #` OR (b) described the issue in-PR following the relevant issue template - [x] I have not referenced internal/instance-local Paperclip issues or links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip` URLs) - [x] My branch name describes the change (e.g. `docs/...`, `fix/...`) and contains no internal Paperclip ticket id or instance-derived details - [x] I have run tests locally and they pass - [x] I have added or updated tests where applicable - [x] I have updated relevant documentation to reflect my changes - [x] I have considered and documented any risks above - [ ] All Paperclip CI gates are green - [ ] Greptile is 5/5 with no open P2s, recommendations, or follow-ups - [x] I will address all Greptile and reviewer comments before requesting merge 🤖 Generated with [Claude Code](https://claude.com/claude-code) --------- Co-authored-by: Claude Opus 5.5 <noreply@anthropic.com> |