Commit Graph
2246 Commits
Author SHA1 Message Date
96bc021edb fix(server): certify settled legacy processes for future retries (#19377)
## Thinking Path

> - Paperclip is the open source app people use to manage AI agents for
work.
> - Bounded retries must preserve current authority, budgets and
deadlines.
> - The tenant can wait for supported future work after the source
process and its cleanup stop.
> - Retained process identity alone cannot prove that cleanup finished.
> - This change records host-owned settlement and checks its exact
identity before a retry can cover its wait.
> - Uncertain process state, changed authority, live claims and cleanup
debt keep the tenant awake.

## Linked Issues or Issue Description

Refs #19001. Related dependencies: #19019 and #18988. Related #19340
covers explicit Native task Retry; this change covers future Legacy
process retries.

Current integrated source: `1645970a9322d1213ba25fc7b52366c285682977`,
normally merged with actual master
`131b566ca4fa866c4348739c75cfe48c805b3398`. The prerequisites above are
merged. This PR targets `master`.

**What happened?**

A future issue, company or review retry can retain its failed source
process identity. The deadline reader could not prove that host cleanup
finished. Supported waits stayed blocked. Ordinary issue retries also
needed an exact source-settlement check, and represented coalesced
requests needed exact input coverage.

**Expected behavior**

A supported future retry covers only its existing wait, under current
company and actor authority, after exact host settlement. Missing,
malformed, stale, cancelled, Native or unfinished source state stays
blocked. No retry gains new execution authority.

**Steps to reproduce**

Fail an ordinary process or fail environment preparation before adapter
entry. Let normal cleanup schedule the existing retry. Inspect its
settlement and deadline, stop and reconstruct the owner, and admit one
useful successor at the saved deadline. Hold cleanup or change authority
to verify that the reader refuses coverage.

## What Changed

- Add nullable internal `legacyProcessSettlement` state through normally
generated migration `0439_cultured_impossible_man`. No backfill or
adapter result creates the record.
- Write exact host settlement after stopped-process and cleanup checks.
Compare the current run and reject live claims or cleanup debt. Optional
persistence failure preserves normal cleanup and keeps sleep coverage
blocked.
- Add a separate preparation receipt for a claimed Legacy run that
failed before any adapter or Native dispatch. Require the same boot, run
times, preparing stage, released claim and completed cleanup. A null PID
alone proves nothing.
- Clear settlement on a new claim, process metadata or Native selection.
Omit the internal record from public serialized data.
- Check exact source lineage and current authority for ordinary issue,
company and taskless retries. Cover completed coalesced requests only
when the admitted retry represents their exact inputs.
- Add the closed `current_review_retry` wait with current reviewer,
stage and existing issue authority checks. Require a nonempty current
stage ID.
- Add actual producer, cold reconstruction, SQL negative, redaction and
optional-persistence controls.
- Repair CI fixture expectations for the additive column, startup mock,
budget owner and popup return URL. Bind the controlled Native comment
server explicitly to loopback.
- Replace temporary Slack clock logging with an exact persisted-deadline
assertion. Wait until that real deadline before the existing single
default poll. Keep both forced polls, business assertions and timing
limits.

## Verification

- On final integrated source `1645970a`, normal Shared/SDK
prerequisites, Runner TypeScript and the entire normal App layered
typecheck pass. Tracked source and lockfile remain unchanged.
- All 26 whole-file settlement, recovery-reader and bootstrap controls
pass. Seven separate real PostgreSQL producer/negative cases pass at
`cf16c6a`; each has one selected passing case and 18 filtered
registrations. Filtered registrations are not acceptance.
- Master then changed the preparation source-lock scope. Its three
intersecting cases were rerun on final `1645970a`: an actual failed
company process, an actual failed ordinary issue process, and held
preparation cleanup. Each preserves its source identity and original
deadline and admits one useful successor. Issue and preparation cases
exercise normal automatic retry; the company case uses the normal
explicit bounded-retry producer.
- The unchanged 26 controls and four other PostgreSQL cases retain their
`cf16c6a` proof after a scoped source comparison. Optional
settlement/preparation persistence failures keep certification blocked
while normal cleanup completes. An entered adapter without process
identity stays uncertified. This is scoped carry, not a claim that every
earlier case ran again on the final head.
- All recorded test owners and controlled groups closed. Final read-only
SQL audits returned no test sessions. One earlier postcase resource
barrier observed a transient unattributed database backend; that
database and original evidence remain preserved. Its later disappearance
is recovery, not an explained cause. No assertion, deadline or test body
was relaxed.
- Migration0439 was generated normally after master history. All
executable SQL and journal history are preserved; the five retained
snapshots are0435–0439. Every Legacy-owned patch and unrelated
actual-master blob/mode is preserved.
- Published exact head `1645970a9322d1213ba25fc7b52366c285682977` passes
all current required checks: 68 successful contexts and eight expected
skips after exhaustive pagination and superseded-run accounting. The
fresh complete Greptile review scores this exact head 5/5. All four
inline review threads are resolved. The latest Ponytail turn stopped
without a verdict; one normal retry was requested, with no active turn
or new finding observed. No old-head score is used. The original
old-base policy failure, its dependent aggregate failure, and the
corrected description-gate failure remain recorded. No full local
repository suite is claimed; remote typecheck, test and build gates
pass.

To repeat the real database coverage, set both
`PAPERCLIP_RECOVERY_DEADLINES_TEST_DATABASE_URL` and
`PAPERCLIP_RECOVERY_DEADLINES_TEST_ADMIN_DATABASE_URL` to the same fresh
dedicated test database and run the selected
`recovery-deadline-acceptance.test.ts` cases with one worker. An unset
URL, skipped case or filtered registration is not acceptance.

The fixtures use controlled local processes and real PostgreSQL.
Reconstruction creates new service owners inside the same test process.
They do not prove deployed Cloud alarms, physical host/database
suspension, new-host recovery or Native capacity settlement. The
original30-second retry remains below the Cloud270-second minimum wake
lead.

The merge projection also includes actual master
`c3180398faca815fed7a62674bd4b0c4e88884ae`, whose common completion path
now sends deferred/recovery notifications. Its unpublished normal merge
tree is `16b028d57150f8caa576e913f38343a365b542dd`. Normal Shared/SDK,
Runner TypeScript and the full App graph pass on that combined source.
One unchanged ordinary-issue acceptance case was rerun there: an actual
failed process retains the original automatic retry deadline, admits one
useful successor, and passes the settlement, authority and no-duplicate
assertions. It passed in 45.055 s; 18 filtered registrations are not
acceptance. All known owners and groups closed, and the independent
final database audit found zero remaining test sessions. The successful
database was removed normally. Recorded worker socket peak is
unavailable for this run; parent-process zero values are not used as
worker measurements. All 29 Legacy-owned paths and every unrelated
master blob and mode are preserved.

Two outside-diff review observations concern existing waiting-chat
compaction and cross-host Native result-lease recovery. Their files are
byte-identical to current master. This focused Legacy change does not
fix or qualify those separate paths.

## Risks

Settlement proves exact local closure. It does not cover live provider
work, Native ownership, cancellation, costs, claims, cleanup debt or
changed authority. Independent checks remain.

Ship normal migration0439 with the reader and writer. Preserve
executable history and the newest five snapshots0435–0439. Generate the
MCP child's next migration normally after this parent.

The prerequisites are merged; the final remote checks must use this
integrated exact head. This proof uses controlled local processes and
external PostgreSQL. It does not establish deployed Cloud alarm
acceptance, physical host or database suspension, cold host recovery, or
R5 Native capacity settlement. The30-second retry is below the Cloud
minimum wake lead.

This focused repair follows the roadmap's bounded recovery and Cloud
deployment work. It adds no new provider policy.

## Model Used

OpenAI `gpt-6.1-sol` assisted with readers, fixtures, source review and
verification through Codex. A coordinating GPT-6-family agent
implemented and reviewed shared lifecycle wiring and integration. Tools
included Git, native TypeScript checks and controlled tests. Exact
served revisions and context limits were not exposed.

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used and its available capability
details
- [x] I have checked ROADMAP.md and related work
- [x] I have searched GitHub for duplicate or related PRs and linked
them above
- [x] I have linked existing public work and described the issue
- [x] I have not included internal issue IDs or private links
- [x] My branch name describes the change
- [x] Required focused checks pass at their explicitly recorded
source/carry scopes above
- [x] I have added or updated meaningful tests
- [x] I have recorded the internal contract and migration requirements
- [x] I have documented risks and evidence limits
- [x] All required published exact-head Paperclip CI gates are green
- [x] Published exact-head Greptile is 5/5 with no open findings in this
focused diff; separate unchanged master observations are identified
above
- [x] I will address reviewer findings before requesting merge

---------

Co-authored-by: Paperclip <noreply@paperclip.ing>
Co-authored-by: Codex <noreply@openai.com>
2026-11-07 00:56:04 -06:00
Nicky LeachandClaude Opus 5.5 bf45f66619 docs(runner): separate the legacy-adapter paragraph in the Runner README (#19753)
## Thinking Path

> - Paperclip is the open source app people use to manage AI agents for
work
> - The native Runner package has a README that explains its contracts
> - One section explains how a resumed run gets a fresh-conversation
handoff
> - The next text, about legacy adapters, has no blank line before it
> - Markdown renders the two texts as one paragraph, so the
legacy-adapter text looks like part of the native handoff text
> - This pull request adds the missing blank line
> - The benefit is a README that separates native and legacy behavior
clearly

## Linked Issues or Issue Description

**Issue type**
Formatting error in package documentation.

**Where is the issue?**
`packages/paperclip-runner/README.md`, the paragraph that starts "Legacy
adapters advertise `supportsToolRefreshOnResume`".

**What's wrong?**
The paragraph has no blank line before it. Markdown joins it to the
previous paragraph about the native fresh-conversation handoff.

**Suggested fix**
Add a blank line before "Legacy adapters advertise".

## What Changed

- Add one blank line in `packages/paperclip-runner/README.md` before the
legacy-adapter paragraph.

## Verification

- `git diff --stat`: one file, one line added.
- I read the changed section. The legacy-adapter text now starts its own
paragraph.
- No code changed, so no tests are necessary.

## Risks

- Low risk. This is a documentation-only change.
- The Runner build-input digest includes every file in
`packages/paperclip-runner`. This change therefore changes that digest,
and the next release builds a new Runner image. The Runner behavior does
not change.

## Model Used

- Claude Opus 5.5 (`claude-opus-5-5`) in Claude Code, with tool use
(shell, file editing).

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have searched GitHub for duplicate or related PRs and linked
them above
- [x] I have either (a) linked existing issues with `Fixes: #` / `Closes
#` / `Refs #` OR (b) described the issue in-PR following the relevant
issue template
- [x] I have not referenced internal/instance-local Paperclip issues or
links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip`
URLs)
- [x] My branch name describes the change (e.g. `docs/...`, `fix/...`)
and contains no internal Paperclip ticket id or instance-derived details
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [x] All Paperclip CI gates are green
- [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups
- [x] I will address all Greptile and reviewer comments before
requesting merge

🤖 Generated with [Claude Code](https://claude.com/claude-code)

Co-authored-by: Claude Opus 5.5 <noreply@anthropic.com>
2026-11-07 06:38:14 +00:00
DottaandClaude Opus 5.5 464e6e16e0 fix(native): resume copyback after a restart kills its same-host owner; one board action otherwise (#19717)
## Thinking Path

> - Paperclip is the open source app people use to manage AI agents for
work
> - Native runs save the agent's workspace files after the provider turn
finishes (copyback)
> - One controller owns copyback at a time. The run records that owner
in `runnerProfileJson.nativeWorkspaceFinalizationOwner` (host, PID,
token)
> - A control-plane restart can kill the controller during copyback. The
dead controller can never confirm its own stop
> - Recovery then waited for a board confirmation. No surface offered
that confirmation, so the run stayed `running` and the task stayed
`in_progress` with no visible action
> - This pull request lets the next controller on the same host prove
the stop by itself. It also gives the board one clear action when that
proof is not possible
> - The benefit is that a restart during copyback resumes by itself, and
a task never waits silently for a person

## Linked Issues or Issue Description

**What happened?**
In a Daytona restart-chaos wave, a kill during workspace copyback left
the run `running` and its task `in_progress`. Recovery reported
`native_workspace_finalization_owner_unverified`. The run was still
`running` when the wave timed out.

**Steps to reproduce**
1. Start a native remote (sandbox) run.
2. Kill the control-plane process (SIGKILL) after the provider result is
accepted, during copyback.
3. Restart the control plane on the same host.

**Expected behavior**
If the previous controller and its copyback children are proven stopped
on this host, recovery resumes copyback without a new agent turn.
Otherwise, the task shows one board action to confirm that the previous
server stopped.

**Actual behavior**
The recorded owner was cleared only by
`resumeNativeWorkspaceAfterOwnerStop`. Same-host recovery also required
a completed-copyback barrier, which an interrupted copyback never has.
The task presentation showed `working`, and the UI had no control for
the confirmation.

Refs #19578 (boot-ID fencing for unstarted runs; same proof style).

## What Changed

- Root cause:
`server/src/services/native-runtime/native-workspace-finalization-ownership.ts`
sent a dead same-host owner to `requireStopVerification` when no
`workspace_finalize` operation had succeeded. That case is exactly a
restart during copyback.
- New `native-workspace-owner-stop-proof.ts`. The owner receipt now
records the controller's process group (`processGroupId`). Copyback
children (tar, Git) are not detached, so they keep that group. A
successor on the same host releases the receipt only when the receipt
names another controller boot, the PID is dead or recycled (process
start time), and the group is empty or has no member outside the
successor's own process tree that started after the old controller. Age
alone never proves a stop.
- A still-live group member returns `local_stop_pending`. The
finalization worker rechecks it on its existing ownership recheck
interval. The board action stays visible meanwhile.
- A successful local proof writes `issue.workspace_owner_stop_verified`
with the proof and marks the recovery `resuming`, like the existing
platform proof.
- A receipt from another host, a receipt without a process group, or a
host without `ps` keeps the fence. The task interruption is now
`waiting_for_user` with `userAction: "confirm_owner_stop"` (new shared
enum value), not `working`.
- UI: the task chat shows one **Confirm the previous server stopped**
action. It asks for stop evidence and calls the existing
`resume-workspace-finalization` API. It is shown only to roles that hold
`runtime:confirm_owner_stop` (company owner or administrator, local
board, instance administrator). The inbox names the same action.
- The copyback advisory lock, the coordinator finalization lease, and
remote save fencing are unchanged.
- Docs: `doc/native-workspace-finalization-recovery.md`.

## Verification

- Red then green on embedded Postgres
(`server/src/services/native-runtime/native-workspace-finalizer.test.ts`):
- same-host controller killed with SIGKILL, its process group empty:
before `owner_unverified`, after `acquired` with the proof logged and no
agent wake
- a non-detached orphan child of the dead controller still runs:
`local_stop_pending`, no copyback; after the child exits, `acquired`
  - a receipt without a process group: still `owner_unverified`
- a foreign-host owner: the task presentation was `working` (red), now
`waiting_for_user` / `confirm_owner_stop`; after the board confirmation
it is `working` again
- The existing orphan test (a detached child) and all other finalizer
tests pass: `npx vitest run
src/services/native-runtime/native-workspace-finalizer.test.ts
src/__tests__/native-workspace-finalization-work.test.ts
src/services/task-interruption-presentation.test.ts` (135 passed).
- UI: `npx vitest run src/components/WorkspaceExportRecovery` (34
passed), including the action call body and the non-administrator case.
- `pnpm check:token-gates` clean. Server and UI typecheck clean for the
changed files.
- Live Daytona restart-chaos wave: results are added in a comment below.

## Risks

- A process-table check that reports a member wrongly as live only keeps
the existing fence. The board action is still available.
- A subreaper that adopts orphans does not change their process group,
so the proof does not depend on the parent PID.
- A child that a future change spawns with `detached: true` would leave
the group. Copyback paths do not do that today. The existing
detached-orphan test still fails closed, because a receipt without a
process group is not released.
- Old receipts have no process group. They keep the board action.

## Model Used

- Claude Opus 5.5 (`claude-opus-5-5`), Anthropic, used through Claude
Code with tool use (shell, file edits, test runs).

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have searched GitHub for duplicate or related PRs and linked
them above
- [x] I have either (a) linked existing issues with `Fixes: #` / `Closes
#` / `Refs #` OR (b) described the issue in-PR following the relevant
issue template
- [x] I have not referenced internal/instance-local Paperclip issues or
links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip`
URLs)
- [x] My branch name describes the change (e.g. `docs/...`, `fix/...`)
and contains no internal Paperclip ticket id or instance-derived details
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [ ] All Paperclip CI gates are green
- [ ] Greptile is 5/5 with no open P2s, recommendations, or follow-ups
- [x] I will address all Greptile and reviewer comments before
requesting merge

🤖 Generated with [Claude Code](https://claude.com/claude-code)

---------

Co-authored-by: Claude Opus 5.5 <noreply@anthropic.com>
2026-11-06 23:31:07 -06:00
DottaandClaude Opus 5.5 fc7e3a6503 fix(recovery): never replace a native session after a deterministic refusal (#19733)
## Thinking Path

> - Paperclip is the open source app people use to manage AI agents for
work
> - Native agent runs keep a saved provider session, and same-run
recovery resumes it after a failure
> - When resume fails and the checkpoint allows it, recovery archives
the saved continuity state and opens a fresh replacement session
> - Recovery used that path for every resume failure, including
deterministic refusals that left the saved state unchanged and repeat on
every retry
> - In five staging tasks a refusal (a protected launch argument, or a
predecessor tool call with no result) escalated into a replacement. The
remote archive move failed part way, the next attempt found no runner
state, and each task was blocked for workspace repair
> - This pull request stops before replacement after a closed-class
refusal, keeps the saved state, and hands the run to an operator with a
named reason
> - The benefit is that a deterministic refusal can no longer damage
saved state or open a replacement over an unsettled external action

## Linked Issues or Issue Description

Refs #19659, Refs #19516, Refs #19334

**What happened?**
Five Codex tasks on Daytona sandboxes failed on staging. The first
attempt failed with a deterministic refusal:
- `run.attach cannot change protected launch arguments` (four tasks,
fixed separately in #19659), or
- `native_runner_source_semantic_reconciliation_required` with a
predecessor `paperclip_call_assigned_tool` call still pending (one
task).

The same-run retry then opened a replacement session.
`archiveContinuityState` failed with
`runner_continuity_break_archive_failed` and no detail. The third
attempt failed with `runner_remote_state_unavailable: exit=1`, and the
task was blocked with "Workspace repair required".

**Steps to reproduce**
1. Save a native session whose checkpoint policy is
`allow_replacement_after_resume_failure`.
2. Make the resume fail with a refusal that does not change state (an
attach refusal, or a pending tool call).
3. Same-run recovery opens a replacement session and archives the saved
continuity state.

**Expected behavior**
A deterministic refusal stops the run for an operator. The saved state
stays intact. A run with a pending side-effecting call never reaches
replacement. Transport drops keep the existing retry behavior.

**Root cause**
`executeNativeSession` checked only the checkpoint's replacement policy.
The closed failure class (#19334) only had an effect when replacement
was forbidden. Attach refusals and pending tool calls had no class at
all, and the source-reconciliation refusal was a plain `Error`.

## What Changed

- Runner (`provider_backend.rs`, `durable/mod.rs`): `run.attach`
refusals that would change the durable Codex profile or a protected
launch argument carry the closed classification
`provider_attach_refused`. An attach blocked by
`durable_pending_tool_calls` carries `provider_side_effect_pending`.
These refusals already leave the saved state unchanged.
- Contracts (`harness-driver.ts`): new closed classes
`PROVIDER_ATTACH_REFUSED` and `PROVIDER_SIDE_EFFECT_PENDING`. A typed
`NativeRunnerSourceReconciliationRequiredError` replaces the plain
`Error` at the five `native_runner_source_*_reconciliation_required`
throw sites. `runnerRecoveryFailureClass` reads the authenticated
command-result classification or the typed error, never message text.
- Runtime (`native-session-runtime.ts`): after either class, recovery
never opens a replacement session, whatever the checkpoint policy.
- An attach refusal ends with the existing
`NativeProviderStateIncompatibleError`, which maps to the existing
operator path `native_provider_state_incompatible`.
- A pending side effect ends with the new
`NativeProviderSideEffectPendingError`.
- Server (`native-session-executor.ts`, `native-session-resume.ts`,
shared `EXECUTION_RECONCILIATION_CAUSES`):
`native_provider_side_effect_pending` is a permanent failure and an
execution-reconciliation cause, so the board gets a reconciliation
(record whether the action ran) instead of a generic Retry. The
reconciled continuation does not rebind the saved session, which still
refuses attachment. It starts a fresh provider session in the same
workspace. The saved session and workspace are unchanged.
- Archive (`archiveContinuityState`): a failed remote move now records
the bounded (512 characters), redacted exit status and output in
`runner_continuity_break_archive_failed: exit=… timedOut=… <output>`.
The remote move already ran before the local move on `master`, so a
failed remote move leaves the local state in place.
`restart-interrupted-turn.ts` accepts the detailed message for its
reattachment-loss retry.
- Docs: `doc/execution-semantics.md` and
`packages/paperclip-runner/docs/durable-recovery.md` describe the new
rule.

## Verification

Red before the fix, green after (each test first run against unchanged
source from `origin/master` 644ee66f5d):

- `native-session-runtime.test.ts`, test "never replaces a session after
a deterministic, non-destructive recovery refusal". Red: replacement was
attempted (`TypeError: Invalid value used as weak map key` from the stub
replacement). Green: typed error, and `openReplacementSession`,
`openSession` and `openRun` are not called.
- `harness-driver-backend.test.ts`, test "keeps the runner's closed
class of a failed recovery". Red: the typed error did not exist. Green:
both new classes are read from the command result and from the typed
error. The same message text without the type stays unclassified.
- `tests/codex_provider.rs` (real durable executor and fake Codex
app-server):
-
`attach_with_a_pending_tool_call_is_classified_as_a_pending_side_effect`.
Red: `left: None, right: Some("provider_side_effect_pending")`.
-
`saved_codex_thread_attaches_after_a_release_changes_its_feature_toggles`
(protected sandbox change). Red: `left: None, right:
Some("provider_attach_refused")`.
- `native-session-executor.test.ts`:
- Test "stops same-run retries for an operator while a saved
side-effecting call has no result". Red: `expected
'native_session_interrupted' to be
'native_provider_side_effect_pending'`.
- Test "retains the local controller checkpoint until remote continuity
archiving succeeds: failed/timeout". Red: the message had no detail.
Green: the message has the exit status and output, a token in the output
is redacted, and the local runner and control-plane files are intact.

Safety and regression checks:
- New test "still replaces a session after an unclassified resume
failure when the checkpoint allows it". It passes before and after: a
transport drop still reaches replacement.
- Existing test "types a runner-proven incompatible session when
same-session recovery is required" still passes.
- `native-session-resume.test.ts`: a source stopped with
`native_provider_side_effect_pending` is not rebound.
- `run-completion.test.ts` "replays saved user intent through normal
Retry …" passes with the detailed archive message.
- Runner Vitest: `native-session-runtime.test.ts` and
`harness-driver-backend.test.ts` (266 passed);
`runnerd-codex-transport-warm-attachment.test.ts` and
`codex-app-server-driver.recovery.test.ts` (74 passed).
- Rust: `--lib` (560 passed, plus one ACPX timing test that failed under
load and passed when rerun alone), `codex_provider` (118 passed),
`native_provider_backend` (45 passed), `durable_recovery` (3 passed).

Not run: a live staging recovery at this revision. The local server
typecheck could not resolve the unbuilt runner package, so required CI
provides typecheck.

## Risks

- A run that a replacement session would have continued after an attach
refusal now stops for an operator. The refusal repeats on every retry,
so the replacement was the only way past it. It also destroyed saved
state, which is what blocked the staging tasks. A board Retry still
continues the task in a fresh session in the same workspace. This is the
existing `native_provider_state_incompatible` behavior.
- A new failure code `native_provider_side_effect_pending` appears in
run records and recovery actions. It joins
`EXECUTION_RECONCILIATION_CAUSES`, so the UI shows the reconciliation
flow, not Retry.
- An attach refusal used to reach an automatic replacement; it now needs
one board Retry. This is intended: the replacement archived saved state
and failed part way on staging.
- The pending-side-effect class means "no result delivered to the
runner". The controller replays a recorded tool outcome only after
attach. A call whose outcome the server already recorded therefore also
stops for an operator. That is conservative; the reconciliation shows
the recorded outcome.
- Only a pending tool call classifies an attach blocker. Other blockers
(active turn, ambiguous turn start, active goal) keep their current
behavior.
- The archive error message is longer. The one exact-match consumer now
accepts the `code: detail` form.

## Model Used

- Claude Opus 5.5 (`claude-opus-5-5`), Anthropic, used through Claude
Code with tool use (shell, file edit, browser reads of staging).

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have searched GitHub for duplicate or related PRs and linked
them above
- [x] I have either (a) linked existing issues with `Fixes: #` / `Closes
#` / `Refs #` OR (b) described the issue in-PR following the relevant
issue template
- [x] I have not referenced internal/instance-local Paperclip issues or
links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip`
URLs)
- [x] My branch name describes the change (e.g. `docs/...`, `fix/...`)
and contains no internal Paperclip ticket id or instance-derived details
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [x] All Paperclip CI gates are green
- [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups
- [x] I will address all Greptile and reviewer comments before
requesting merge

🤖 Generated with [Claude Code](https://claude.com/claude-code)

---------

Co-authored-by: Claude Opus 5.5 <noreply@anthropic.com>
2026-11-06 23:25:54 -06:00
839d41aabb fix(server): retire owned plugin listeners before idle sleep (#19358)
## Thinking Path

> - Paperclip is the open source app people use to manage AI agents for
work.
> - Plugins receive durable agent lifecycle events through a registered
host.
> - The host uses a PostgreSQL LISTEN connection to wake delivery.
> - An idle report could return `none` while that host-owned connection
stayed open.
> - This change gives that listener an exclusive owner and closes it
during the current idle hold.
> - Release or expiry restores listening before journal replay.
> - Failed close and pending work continue to block sleep.

## Linked Issues or Issue Description

Refs #18988, which is now merged. This focused ten-file change now
targets master. Current integrated candidate:
`0f83005122ef1bdb1f1e08f8f58424c9a840ebb1`, with actual master
`644ee66f5d4ae8365fe8b9eca57df2be7405b5ab` preserved through normal
merges. No history was rewritten.

**What happened?**

A normal local App with an installed lifecycle plugin could return an
idle `none` report while its lifecycle LISTEN backend and socket stayed
open.

**Expected behavior**

The host must close its own listener before it reports idle safety. It
must retain other subscriptions, durable events, company scope, retry
deadlines and useful reactivation.

**Steps to reproduce**

Start the normal server with a lifecycle plugin. Create an agent and
wait for its durable acknowledgment. Stop the server, create another
agent while it is stopped, and restart with the same files. Request an
owned idle hold after ordinary replay. Check the exact listener backend
and matched Node socket before shutdown. Let the valid hold expire
naturally, then make an ordinary authorized agent update and check its
durable plugin acknowledgment.

Live executing or persistent preview services remain active. The
separate hosted preview dependency
[paperclip-cloud#478](https://github.com/paperclipai/paperclip-cloud/pull/478)
retains its own App and operator prerequisites. This PR does not claim
deployed preview or suspension acceptance.

## What Changed

- Add a private, exclusive database listener owner that inherits the
normal client policy.
- Prepare plugin lifecycle retirement after native retirement under the
same current idle hold.
- Use one delivery-eligibility helper for dispatch and idle journal
inspection. It preserves the same manifest, capability, company-disable
query, and skip rules.
- Close only the owned listener. Keep failed close ownership and
inspection failures visible.
- Resume listening on normal release or expiry, before journal replay.
- Preserve disabled-feature retry history and the original deadline on
re-enable.
- Await lifecycle disposal during normal shutdown and consumer teardown.
- Add owner regressions and document the lifecycle contract.

## Verification

**Current integrated source:**
`0f83005122ef1bdb1f1e08f8f58424c9a840ebb1`. Fresh normal Runner
TypeScript passed in 0.785 seconds. The complete normal App layered
semantic check passed in 28.284 seconds. All tracked source, the
lockfile and the 18 separate private witness inputs stayed unchanged.
Known compiler owners closed and the isolated temporary home was
removed.

**Current product qualification:** at measured integration
`896cc9b62993e6ed10418d7a7417e1ddbf8dc89c`, all three whole files passed
with no failures or skips: lifecycle delivery 40, runtime hooks 20, and
runtime assignments 24. The actual physical LISTEN and natural-expiry
controls passed. All owned clients and captured processes closed.
Independent final session checks were zero before normal deletion of
each successful test database.

**Normal full-App physical retirement:** the original case passed in
47.574 seconds. It exercised real startup, readiness, SDK callbacks,
durable ACK, foreign-company exclusion, physical stop, offline input and
cold replay. The initial unknown hold and its ordinary release remain in
the evidence. After the original 30.5-second cadence, a new valid hold
returned quiescent. The exact current cold-App LISTEN backend and its
matched Node socket closed before server stop.

**Normal full-App natural expiry:** the separate original case passed in
77.391 seconds under its original 90-second body cap. The final valid
30-second hold expired naturally. A new listener backend and matched
current App socket appeared before fresh input. An ordinary authorized
agent-name PATCH produced journal event 20, the actual SDK callback and
durable ACK. Foreign exclusion and readiness assertions passed. The
final measured hold had no manual release, replacement hold or shortened
TTL. The original preparatory unknown hold, ordinary release and
30.5-second cadence remain explicit.

Both App cases used the normal current server helpers and actual SDK
bundling/worker entry. A private compatibility change supplied the same
owned HOME at the exact existing child-fork boundary. It did not change
the product helpers, business assertions or timing limits. These
separate acceptance fixtures remain outside the focused product diff.

**Source carry to the current candidate:** all nine other owned files,
listener mechanics, actual producer paths, SDK paths and measured hold
behavior are unchanged. The sole owned intersection from newer master is
an independent environment-delete cleanup callback in `app.ts`. The
plugin witnesses do not call that route. Normal merges preserve every
unrelated master blob and file mode. The fresh current semantic checks
above qualify the integrated source. New master Native crash-recovery
and saved-copyback Retry capabilities are not claimed by these plugin
cases.

**Actual master merge target:** newer master contains retained plugin
Runner release/resume and other Native recovery fixes. The projected
combined target passed fresh normal Runner TypeScript in 0.799 seconds
and the full App semantic check in 29.715 seconds. All ten plugin-owned
blobs and modes remain exact to the published head; every unrelated
master change is preserved. The measured plugin cases create no Native
provider turn or warm Native session. The unchanged
native-first/plugin-second ordering still checks the native result
before listener retirement. Later sparse-checkpoint and Native
response-publication changes do not enter those paths. This is a scoped
source carry, not new hosted Runner acceptance.

**Failures retained:** an earlier reactivation fixture's real timer
returned one millisecond before its original wall-clock expiry. Its
private fixture now waits any positive remainder and retains the same
expiry assertion and limits. The earlier partial-composition `unknown`
result remains distinct from normal-startup proof. Current qualification
also exposed missing normal workspace dependencies and a private guard
that assumed loose Git refs. Normal owned dependency setup and an exact
loose-or-packed reader fixed those setup failures. No business
assertion, timeout, permission boundary or product sleep gate was
relaxed.

Repeat focused product coverage with a fresh external fixture database
and the normal server Vitest command, one worker:

```sh
pnpm --filter @paperclipai/server exec vitest run src/__tests__/plugin-lifecycle-delivery.test.ts --maxWorkers=1 --no-file-parallelism
pnpm --filter @paperclipai/server exec vitest run src/__tests__/agent-runtime-hooks.test.ts --maxWorkers=1 --no-file-parallelism
pnpm --filter @paperclipai/server exec vitest run src/__tests__/agent-runtime-assignments.test.ts --maxWorkers=1 --no-file-parallelism
```

Exact current head `0f83005122ef1bdb1f1e08f8f58424c9a840ebb1` has 60
successful checks, three skips and one neutral result, with no pending
or failing contexts. Greptile completed its full review at 5/5 with no
actionable issue. All root and nested review pages were read; the
earlier eligibility finding is resolved. Ponytail's latest turn stopped
before a verdict. A normal retry was requested; no current Ponytail
verdict or score is claimed. Previous `3ca86ec` CI and scores are
historical. A full local repository typecheck/test/build or browser run
is not claimed. Controlled local App/SDK/PostgreSQL proof does not
establish live provider, deployed Railway/Neon suspension, signed Cloud
alarms or global exactly-once delivery.

## Risks

- A listener close failure or uncertain inspection must continue to
block sleep.
- Release, expiry, configuration changes, and journal arrival can race
with retirement. Epoch and current-hold checks retain conservative
results.
- Delivery remains at least once across uncertain ACK boundaries. This
change does not add global exactly-once delivery.
- The database helper closes only its exclusive listener client. Other
owners and subscriptions keep their resources.

## Model Used

OpenAI `gpt-6.1-sol`, reasoning and code/tool use. The managing Codex
agent implemented shared database/composition seams and reviewed the
change; its exact model ID was not exposed. The runtime does not expose
a verified context-window size.

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have searched GitHub for duplicate or related PRs and linked
them above
- [x] I have either (a) linked existing issues with `Fixes: #` / `Closes
#` / `Refs #` OR (b) described the issue in-PR following the relevant
issue template
- [x] I have not referenced internal/instance-local Paperclip issues or
links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip`
URLs)
- [x] My branch name describes the change (e.g. `docs/...`, `fix/...`)
and contains no internal Paperclip ticket id or instance-derived details
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [x] All Paperclip CI gates are green
- [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups
- [x] I will address all Greptile and reviewer comments before
requesting merge

---------

Co-authored-by: Paperclip <noreply@paperclip.ing>
Co-authored-by: Codex <noreply@openai.com>
2026-11-06 22:56:47 -06:00
DottaandClaude Opus 5.5 c45c7cb854 fix(workspaces): ignore killed-transfer scratch in sparse checkpoints (#19730)
## Thinking Path

> - Paperclip is the open source app people use to manage AI agents for
work
> - A native run in a remote sandbox copies its workspace back to the
host after the turn. A sparse checkpoint copies only changed entries,
and the host validates each entry against the sandbox's own manifest
> - Every Daytona transfer stages a `.paperclip-upload-<uuid>` scratch
file at the sandbox workspace root and removes it only in the same
process
> - A control-plane kill during any transfer leaves that scratch behind.
The sparse checkpoint then recorded it as a workspace file, but
providers never export it. Every later copyback and every saved-work
recovery attempt failed with "Workspace checkpoint payload mismatch"
> - The failed recovery then left an accepted Retry showing "Paperclip
is finishing the saved result" with no run
> - This pull request stops recording transfer scratch, makes the
checkpoint export an exact copy, names the failing entry, and gives a
Retry behind a spent recovery an honest reason and a working action
> - The benefit is that a restart during a transfer no longer makes a
task's saved work permanently unrecoverable

## Linked Issues or Issue Description

Refs #19721 (RC-50: the killed copyback owner; this PR covers the
separate RC-50b cause)

**What happened?**

Restart-chaos waves s12/t01 and s14/t05 (Claude on Daytona). After a
SIGKILL of the control plane, the native result was accepted, and then
workspace copyback failed with "Workspace checkpoint payload mismatch".
In s14 all 6 saved-work recovery attempts failed the same way. A Retry
accepted during recovery kept `retryWait.reason =
finalizing_saved_result` after the recovery budget was spent. No run was
created.

**Steps to reproduce**

1. Start a native Claude run in a Daytona sandbox.
2. SIGKILL the control plane while any provider transfer is in flight.
3. Let the run finish its turn and copy its workspace back.

**Expected behavior**

Copyback succeeds. Provider scratch is not workspace content. A Retry
behind a spent recovery names the failure and can start a new recovery.

**Actual behavior**

The s14 sandbox (6f4a0b6a) still held
`/home/daytona/paperclip-workspace/.paperclip-upload-d99fe36b-5acc-437b-96ad-85d5ff9e79c4.tar`.
Its mtime was 03:29:23, the second of the K4 SIGKILL. The Daytona
provider stages transfer scratch at `remoteDir`, which is the lease
`remoteCwd` (the workspace root). The runtime workspace wipe
deliberately preserves `.paperclip-upload-*`. The checkpoint helper
(`workspace-checkpoint.ts`, `checkpointMain`) recorded the stale tar.
The ordinary export excludes `.paperclip-upload*`, so the host received
nothing for that entry. `validateCheckpointPayload` then threw "payload
mismatch" on every attempt. The file-mode hypothesis was disproved: the
sandbox umask is 022 and the scratch is mode 644.

## What Changed

- `packages/adapter-utils/src/exclude-patterns.ts`: new
`isSandboxTransferScratchPath`, which matches a root-level
`.paperclip-upload-*` entry. This agrees with the wipe's preserve rule
in `buildWorkspaceTarExtractCommand`.
- `packages/adapter-utils/src/workspace-checkpoint.ts`: the sandbox
checkpoint helper skips that scratch. A mismatch error now names the
entry and its recorded, baseline and received forms (kind, octal mode,
short hash; never contents).
- `packages/adapter-utils/src/sandbox-managed-runtime.ts`: the
checkpoint export requests `preserveSourceEntries: true`. The checkpoint
output is an exact copy that the host validates entry by entry. An
ordinary export applies the host umask and drops `._*` and
`.paperclip-upload*` names at any depth. That gives the same permanent
mismatch for a legitimate user file such as `._summary`,
`notes/.paperclip-upload-plan.md`, or a `0775` script.
- `server/src/services/explicit-native-continuation.ts` and
`task-interruption-presentation.ts`: when the run's saved-work recovery
is exhausted, a waiting Retry reports `saved_work_recovery_failed` with
Retry available, instead of `finalizing_saved_result`. The existing task
Retry path starts one new recovery generation.
- `doc/execution-semantics.md`: a short additive note.

## Verification

- `packages/adapter-utils/src/workspace-checkpoint-capture.test.ts` uses
the real checkpoint helper and an export that behaves like Daytona's
ordinary export:
- Before the fix: `Workspace checkpoint payload mismatch at
".paperclip-upload-d99fe36b-….tar": sandbox recorded file mode=644 …;
baseline absent; received absent`. That is the wave error.
  - After the fix: the scratch is not recorded, and validation passes.
- A second case shows that reserved-looking user names and `0775` modes
need the exact export.
- `packages/adapter-utils/src/workspace-checkpoint.test.ts` is an
end-to-end `prepareSandboxManagedRuntime` restore through a provider
model. In that model, ordinary exports drop reserved names and apply the
umask, and preserve exports copy exactly. Two red checks:
- Without `preserveSourceEntries`, it fails with the mismatch on
`._summary`.
- Without the scratch skip, the stale tar leaks into the host workspace.
- Green: the agent file, the `._summary` file and the `0775` mode
arrive, and no scratch arrives.
- `server/src/services/workspace-recovery-preparation-gates.test.ts`,
"names a spent saved-work recovery behind an accepted Retry, and the
next Retry finishes it" (s14 shape):
  - Red: `finalizing_saved_result` after 6 failed attempts.
- Green: `saved_work_recovery_failed` with `canRetry: true`. The next
Retry starts a new generation, recovery completes, and the Retry
continues in exactly one new run.
- Suites: adapter-utils checkpoint, capture, sandbox-managed-runtime,
seed-reuse and managed-seed (168 passed). Server preparation-gates (47),
explicit-native-continuation and task-interruption-presentation (455),
workspace-recovery admission and retry-copyback, and
native-workspace-finalizer. `tsc --noEmit` is clean for adapter-utils
and server.
- Live evidence: I started the stopped s14 sandbox read-only, listed its
workspace, and stopped it again. No Daytona replay was run. The runner
content ID of this checkout matches no built image.

## Risks

- A user file named `.paperclip-upload-*` directly at the workspace root
is no longer captured by a sparse checkpoint. Providers already drop
that name from every ordinary export, and the runtime already reserves
it at the root.
- The checkpoint export now uses the provider's exact-copy mode. A
workspace file with setuid, setgid or sticky bits is refused by that
mode, as it is for the existing exact-copy transfers. The ordinary
export would have stripped those bits and failed validation anyway.
- The stale scratch tar stays in the sandbox. It is ignored, not
deleted, because a concurrent transfer can own a file with the same
prefix.

## Model Used

- Claude Opus 5.5 (`claude-opus-5-5`), Anthropic, through Claude Code
with tool use (shell, file edits, test runs, embedded Postgres, a
read-only Daytona sandbox listing).

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have searched GitHub for duplicate or related PRs and linked
them above
- [x] I have either (a) linked existing issues with `Fixes: #` / `Closes
#` / `Refs #` OR (b) described the issue in-PR following the relevant
issue template
- [x] I have not referenced internal/instance-local Paperclip issues or
links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip`
URLs)
- [x] My branch name describes the change (e.g. `docs/...`, `fix/...`)
and contains no internal Paperclip ticket id or instance-derived details
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [ ] All Paperclip CI gates are green
- [ ] Greptile is 5/5 with no open P2s, recommendations, or follow-ups
- [ ] I will address all Greptile and reviewer comments before
requesting merge

🤖 Generated with [Claude Code](https://claude.com/claude-code)

Co-authored-by: Claude Opus 5.5 <noreply@anthropic.com>
2026-11-06 22:46:16 -06:00
DottaandClaude Opus 5.5 d1ee25d0f7 fix(runner): fail a pending Codex turn start at once with the runner's own terminal failure (#19722)
## Thinking Path

> - Paperclip is the open source app people use to manage AI agents for
work
> - The control plane starts each Codex turn through runnerd and waits
for the turn's start event (`#startTurnWork` in
`runnerd-codex-transport.ts`)
> - In restart storm 5, runnerd failed an accepted continuation turn
before it started (`turn_binding_mismatch`, fixed at its source in
#19718)
> - The transport held that terminal for the pending start and waited
the full 30 s bound
> - It then reported "runnerd did not report the provider turn
identity", which hid the real cause
> - This pull request makes a pending start fail at once with the
runner's own terminal failure
> - The benefit is a faster failure that names its real cause, so
recovery and operators act on the correct fact

## Linked Issues or Issue Description

Refs #19718, #19699, #19608

**What happened?**

Restart storm 5 (seed 7106), task t01 (Codex). Runnerd accepted the
restart continuation turn. About 0.5 s later it committed a
`harness.diagnostic`, a non-recoverable `turn.failed`
(`turn_binding_mismatch`) and a failed `run.terminal`. The transport's
event pump holds a turn terminal while a turn start is pending, so the
start loop never saw it. The start waited 30 s, the #19608 adoption
check found no active turn, and the run failed with "runnerd did not
report the provider turn identity".

**Expected behavior**

When runnerd reports a final failure of the pending turn (a
non-recoverable `turn.failed` or a failed `run.terminal`) before the
turn starts, the start fails at once. The error names the runner's code
and message.

**Steps to reproduce**

1. Use fake Codex with `--foreign-usage-before-turn-started
--turn-started-delay-ms 20000`.
2. Start a turn through the runnerd Codex transport.
3. Before this change, `turn/start` rejects after the full bound with
"runnerd did not report the provider turn identity".

## What Changed

- `runnerd-codex-transport.ts`: new `runnerdPendingTurnStartFailure()`.
It finds a non-recoverable `turn.failed` or a failed `run.terminal`
among the terminals held for the pending start and the committed events
after the cursor.
- `#startTurnWork` checks it while it waits for `turn/started`, before
the adoption snapshot, and in the post-adoption wait. It throws `runnerd
failed the provider turn before it started: <code>: <message>`.
- The check runs only when the turn has not started. A recoverable
terminal does not trigger it. The #19608 late-start adoption path is
unchanged.
- Fake Codex: new `--foreign-usage-before-turn-started` flag. It sends
usage for a turn the runner does not own right after it accepts a turn.
This makes runnerd fail the turn with `turn_binding_mismatch` before it
starts.
- New test in `runnerd-codex-transport-deadlines.test.ts` with real
runnerd and fake Codex.

## Verification

- Red before the fix: `npx vitest run
src/live/runnerd-codex-transport-deadlines.test.ts` → the new test
failed after 16.4 s with "runnerd did not report the provider turn
identity".
- Green after the fix: the start rejects in under 5 s with
`turn_binding_mismatch`, and fake Codex saw exactly one `turn/start`.
- The #19608 tests ("adopts a durably accepted turn whose start
notification outlives the turn-start bound" and "does not adopt an
accepted turn the runner no longer reports active") still pass.
- `npx vitest run src/live/runnerd-codex-transport`: 9 files, 399 tests
pass.
- `pnpm run typecheck` in `packages/paperclip-runner` passes. `cargo
test --bin fake-codex-app-server` passes. `cargo fmt` is clean.
- `pnpm verify` exits 2 (broad input: the fake Codex binary). Required
CI supplies the broad coverage.

## Risks

- Low risk. The new failure fires only when runnerd itself already
reported a final failure and no turn start was observed. In that state
the start could not succeed, and before this change it failed after the
bound anyway.
- If a provider sends a non-recoverable terminal before its own turn
start for a turn that later starts, the start now fails earlier. Codex
sends `turn/started` before its terminal, and runnerd's terminal for a
protocol failure is final, so I do not expect this.

## Model Used

- Claude Opus 5.5 (`claude-opus-5-5`), Anthropic, used through Claude
Code with tool use (shell, file editing). Default context window and
reasoning mode.

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have searched GitHub for duplicate or related PRs and linked
them above
- [x] I have either (a) linked existing issues with `Fixes: #` / `Closes
#` / `Refs #` OR (b) described the issue in-PR following the relevant
issue template
- [x] I have not referenced internal/instance-local Paperclip issues or
links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip`
URLs)
- [x] My branch name describes the change (e.g. `docs/...`, `fix/...`)
and contains no internal Paperclip ticket id or instance-derived details
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [ ] All Paperclip CI gates are green
- [ ] Greptile is 5/5 with no open P2s, recommendations, or follow-ups
- [x] I will address all Greptile and reviewer comments before
requesting merge

🤖 Generated with [Claude Code](https://claude.com/claude-code)

Co-authored-by: Claude Opus 5.5 <noreply@anthropic.com>
2026-11-06 21:48:29 -06:00
DottaandClaude Opus 5.5 42f6b3a870 fix(runner): keep a restart-lost Codex turn's late usage from failing its continuation (#19718)
## Thinking Path

> - Paperclip is the open source app people use to manage AI agents for
work
> - Native Codex runs continue a turn lost to a control-plane restart
once, in the same conversation (#19699)
> - In restart storm 5, a Codex run crossed one graceful restart. The
continuation started, but the task stopped and needed a Retry
> - The runner log shows the cause. The resumed Codex thread sent the
usage of the lost turn after it accepted the continuation turn. The
runner rejected that usage as `turn_binding_mismatch` and failed the run
> - Recovery marks the lost turn as settled in the durable ledger. It
does not tell the live Codex provider, so the provider treats the old
turn's usage as a foreign event
> - This pull request records the lost turn as settled in the live
provider too
> - The benefit is that a restart-lost Codex turn continues without a
Retry

## Linked Issues or Issue Description

Refs #19699, #19608, #19501, #15297

**What happened?**

Restart storm 5 (seed 7106). Task t01 (Codex, B5) crossed one K2 SIGTERM
restart. Recovery resumed the dead runner. Runnerd restored the
conversation and recorded `turn.failed` with
`provider_turn_lost_on_restore` (recoverable). The control plane started
the continuation (#19699). Runnerd accepted it as a new provider turn.
About 0.5 s later, Codex sent `thread/tokenUsage/updated` for the lost
turn id. The runner's durable state records these events:

- `turn.accepted` for the new turn `01a1b3e2-…`
- `harness.diagnostic` `turn_binding_mismatch`, method
`thread/tokenUsage/updated`, `expectedTurnId` = new turn,
`receivedTurnId` = lost turn `01a1b3e0-…`
- `turn.failed` (`recoverable: false`) and `run.terminal` failed

The control plane did not see `turn/started` and failed after 30 s with
"runnerd did not report the provider turn identity". The task needed a
manual Retry.

**Expected behavior**

Usage for the lost turn is history. The runner keeps it as a resume
usage snapshot. The continuation runs, and the task continues without a
Retry.

**Steps to reproduce**

1. Start a Codex turn through the durable runner.
2. Kill the runner while the turn is active. Restore so that the
provider reports no active turn (`provider_turn_lost_on_restore`).
3. Start the continuation turn. Let the provider send
`thread/tokenUsage/updated` for the lost turn after it accepts the new
turn.
4. Before this change, the runner fails the continuation with
`turn_binding_mismatch`.

## What Changed

- `provider_backend.rs`: when recovery finds that the previous active
turn ended while the runner was offline, it now also restores that turn
id into the live provider's settled-turn set. The durable ledger already
settled it. The existing settled-turn path then turns its late usage
into `paperclip/resumeUsageSnapshot` and does not bill its `last` usage
to the run.
- The code skips this step when the settled-turn epoch needs a rollover,
the same as the durable ledger.
- Fake Codex: new `--stale-usage-after-turn-start` flag. With durable
turn ids, it sends usage for the previous turn right after it accepts
the next turn, before `turn/started`. This matches the live Codex order.
- New test
`restart_continuation_ignores_late_usage_for_the_turn_lost_on_restore`
in `tests/codex_provider.rs`. It uses the real durable Codex executor
with fake Codex.

## Verification

- Red before the fix: `cargo test -p paperclip-runner-core --test
codex_provider restart_continuation_ignores_late_usage` failed with the
same diagnostic as the live run (`turn_binding_mismatch`, method
`thread/tokenUsage/updated`, `receivedTurnId: provider-turn-1`,
`expectedTurnId: provider-turn-2`).
- Green after the fix: the same test passes. The continuation emits
`turn.started` for `provider-turn-2`, there is no `turn.failed` or
`run.terminal`, and fake Codex saw exactly two `turn/start` calls (the
original and one continuation).
- `cargo test -p paperclip-runner-core`: all suites pass.
`acpx_park_readiness::hosted_park_acpx_preserves_late_goals_and_rejects_foreign_or_busy_observations`
failed once and passed on rerun. This change does not touch ACPX.
- `cargo fmt --check` is clean.
- Not run: the live restart-chaos replay of
`w-20261107T023921-s7106/t01`. The local harness needs provider
credentials that were not available to this session.

## Risks

- Low risk. The change adds one already-ended turn id to the live
provider's settled set. That set is only used to ignore stale events and
to reject reuse of a settled id. So a provider that later reports the
lost turn id as a new active turn is now rejected, as the durable ledger
already does.
- The change does not address a second, separate problem: after the
runner failed the continuation, the control-plane transport waited the
full 30 s turn-start bound and reported "runnerd did not report the
provider turn identity" instead of the runner's `turn_binding_mismatch`.
That message only applies when such a failure occurs. This PR removes
this specific trigger.

## Model Used

- Claude Opus 5.5 (`claude-opus-5-5`), Anthropic, used through Claude
Code with tool use (shell, file editing). Default context window and
reasoning mode.

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have searched GitHub for duplicate or related PRs and linked
them above
- [x] I have either (a) linked existing issues with `Fixes: #` / `Closes
#` / `Refs #` OR (b) described the issue in-PR following the relevant
issue template
- [x] I have not referenced internal/instance-local Paperclip issues or
links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip`
URLs)
- [x] My branch name describes the change (e.g. `docs/...`, `fix/...`)
and contains no internal Paperclip ticket id or instance-derived details
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [ ] All Paperclip CI gates are green
- [ ] Greptile is 5/5 with no open P2s, recommendations, or follow-ups
- [x] I will address all Greptile and reviewer comments before
requesting merge

🤖 Generated with [Claude Code](https://claude.com/claude-code)

Co-authored-by: Claude Opus 5.5 <noreply@anthropic.com>
2026-11-06 21:17:38 -06:00
DottaandClaude Opus 5.5 ece09c156a fix(runner): keep an accepted result when ACPX reports its turn lost on restore (#19691)
## Thinking Path

> - Paperclip is the open source app people use to manage AI agents for
work
> - Native Codex, OpenCode, and ACPX runs survive control-plane
restarts: runnerd restores the conversation, and the control plane
continues the task from its checkpoint
> - #19658 made recovery keep a durable result when a Codex restore
loses the turn that proposed it. It covered the recovery read path only
> - ACPX reports the lost turn differently. After the restored
conversation reopens, a live `turn.failed` arrives with
`provider_turn_lost_on_restore`
> - That live terminal still turned an accepted `done` result into a
failed run. The run ended `failed` (`adapter_failed`), and the finished
work needed a Retry
> - This pull request moves the rule into the shared terminal mapping. A
restore-lost turn with a held result for that exact turn settles as
completed, whichever path reports it
> - The benefit is that ACPX and OpenCode tasks that already finished
keep their accepted result after a restart, as Codex tasks now do

## Linked Issues or Issue Description

Refs #19658, #19525, #19501, #19539

**What happened?**
In a restart chaos wave, an ACPX Claude task (workload A1) wrote its
brief and proposed a `done` result (`run.result.proposed`, then a
completed `paperclip_finish` tool call). Then a K1 and a K6 crash loop
hit the control plane, and `resume_dead_runner` ran at controller
generations 2 and 3. The restored ACPX conversation emitted
`turn.failed` with `provider_turn_lost_on_restore` (`recoverable: true`)
for the checkpointed turn. The control plane then emitted
`run.result.accepted` with the `done` result, but `run.terminal` came
back `runTerminalState: failed` / `turnTerminalState: failed` /
`reportedWorkDisposition: done`. The run ended `failed` /
`adapter_failed`, "Native session failed".

**Steps to reproduce**
1. Start a native ACPX (or OpenCode) task through runnerd.
2. Let the agent call `paperclip_finish`, and let the control plane
persist the proposal.
3. Kill the control plane and runner before the turn ends.
4. Let restart recovery resume the run. The restored runner reports the
turn lost on restore as a live terminal.

**Expected behavior**
Recovery finalizes the accepted result, and the run succeeds.

**Actual behavior**
ACPX and OpenCode use the same Codex harness session as Codex
(`codex-native-backend.ts`). Recovery restored the held result for the
turn from the durable proposal. But the live `turn/completed`
notification with `status: failed` and `provider_turn_lost_on_restore`
went through `mapTerminalTurn`, which emitted `turn.failed`. The backend
maps `turn.failed` to `runTerminalState: failed`. #19658 handled only
the `thread/read` reconciliation path.

## What Changed

- `codex-session-terminal.ts`: a new
`settleRestoreLostTurnWithHeldResult` helper. When a terminal is
`failed` with `provider_turn_lost_on_restore` and the session holds the
semantic result that this exact turn proposed, the turn settles as
`completed`. `mapTerminalTurn` applies it first, so live notifications
and recovery reads follow one rule.
- `codex-session-terminal.ts`: the helper also covers
`acpx_active_turn_recovery_closed`. Runnerd's ACPX backend
(`acpx_provider_backend.rs`, `restore_session_if_needed`) emits that
code instead of restoring the conversation when its own state already
recorded the accepted result. It is the same restart loss, with the
result already accepted. #19525 already keeps accepted results when
close cannot prove suspension, and session close still handles
`provider_exit_unconfirmed`.
- `codex-harness-session.ts`: `reconcile()` keeps only the missing-turn
case from #19658. The restore-lost read case and the prior-terminal
check now use the shared helper.
- `doc/execution-semantics.md`: the restart paragraph now states that
the rule covers Codex, OpenCode, and ACPX, and both report paths.

## Verification

- Red before the fix, with the real Codex native backend
(`createCodexNativeSessionBackend`) and a fake transport through
`executeNativeSession`: `pnpm --filter @paperclipai/paperclip-runner
exec vitest run src/native-session-runtime.test.ts -t "journaled
completion proposal"`. The new `restore-lost live` scenario failed.
Green after the fix: the run completes with the journaled result on
`turn-1` and a succeeded terminal, and no `turn/start` is sent. The
`restore-lost read` scenario passes on both (#19658 already covered it).
- Driver red/green:
`src/drivers/codex/codex-app-server-driver.recovery.test.ts -t "live
restore-lost"`. With a held result, the live lost terminal was
`turn.failed` before the fix and is `turn.completed` after it. With no
held result, it stays `turn.failed` with the lost cause, so the #19501
continuation is unchanged.
- The driver case was extended to `acpx_active_turn_recovery_closed`
(red with a held result before the extension, then green). It was found
in a live replay where the run ended `failed`/`adapter_failed` with an
accepted `done` result.
- Suites: `src/drivers/codex/` and `src/native-session-runtime.test.ts`
(580 tests), plus `src/backends/` and
`src/live/runnerd-restart-continuation.test.ts`, pass.
`typecheck:typescript` passes.
- Live chaos replays (ACPX Claude): results and a separate new signature
are in a comment below.

## Risks

- The rule needs a held result whose turn id equals the lost turn.
Recovery restores that result only from the durable
`run.result.proposed` for the checkpointed turn, so a result for another
turn does not settle it.
- A restore-lost turn without a held result keeps its failure and the
bounded same-conversation continuation.
- Real provider failures and other terminal states are unchanged.
- No schema, profile, pack contract, or database changes.

## Model Used

- Claude Opus 5.5 (`claude-opus-5-5`), Anthropic, with tool use and code
execution in Claude Code.

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have searched GitHub for duplicate or related PRs and linked
them above
- [x] I have either (a) linked existing issues with `Fixes: #` / `Closes
#` / `Refs #` OR (b) described the issue in-PR following the relevant
issue template
- [x] I have not referenced internal/instance-local Paperclip issues or
links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip`
URLs)
- [x] My branch name describes the change (e.g. `docs/...`, `fix/...`)
and contains no internal Paperclip ticket id or instance-derived details
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [ ] All Paperclip CI gates are green
- [ ] Greptile is 5/5 with no open P2s, recommendations, or follow-ups
- [x] I will address all Greptile and reviewer comments before
requesting merge

🤖 Generated with [Claude Code](https://claude.com/claude-code)

---------

Co-authored-by: Claude Opus 5.5 <noreply@anthropic.com>
2026-11-06 21:07:20 -06:00
Nicky Leach 03498f90ee Add explicit Runner session release and resume support (#19683) 2026-11-06 18:31:23 -08:00
DottaandClaude Opus 5.5 f09b4704b6 fix(recovery): keep the agent's work when Retry continues after exhausted or blocked recovery (#19666)
## Thinking Path

> - Paperclip is the open source app people use to manage AI agents for
work
> - Task recovery restarts agent work after a control-plane restart or a
failed run
> - When automatic recovery runs out or is blocked, the user clicks
Retry
> - Retry then started a fresh isolated attempt cloned from committed
HEAD, so the agent lost its uncommitted files, its task branch and the
worktree Git link
> - A restart must never lose the agent's work
> - This pull request makes Retry keep the task's own workspace when
that is safe, and tells the agent where the old files are when a fresh
attempt is still required
> - The benefit is that a Retry continues the real work instead of
starting over

## Linked Issues or Issue Description

**What happened?**
After `native_restart_recovery_blocked` or an exhausted recovery
generation, a Retry ran in
`isolated-workspace-attempts/<company>/<issue>/<run>/workspace`. That
directory was a detached clone of the base ref. It did not contain the
uncommitted edits from the issue's git worktree. It was not on the task
branch. The agent was not told where the old files were. A restart-chaos
wave graded this as an R2 failure (`pre_fault_files_lost`). A second
defect: when a restart hit the bootstrap of a fresh attempt, preparing
the same run again failed with
`isolated_task_directory_binding_mismatch`, so the Retry could not
finish.

**Expected behavior**
Retry continues in the task's own workspace with its edits and `.git`
intact when no other writer can hold it. When a fresh attempt is really
needed, the old directory stays as it was and the agent gets its path
and its changed files. Preparing the same attempt again after a restart
is idempotent.

**Paperclip version or commit**
`master` at `e482f0f632`, restart-chaos waves on 2026-11-06.

**Steps to reproduce**
1. Start a native task in a git worktree. Let the agent write an
uncommitted file.
2. Kill the control plane so recovery ends in
`native_restart_recovery_blocked` or an exhausted generation.
3. Click Retry.
4. The successor runs in a fresh clone without the uncommitted file or
the task branch.

Root cause:
- `server/src/services/fresh-workspace-continuation.ts`
`canSelectFreshWorkspace` returns a fresh intent for every task Retry
that has a system recovery record.
- `server/src/services/explicit-native-continuation.ts` (fresh selection
in the source loop) then always persisted `fresh_isolated_workspace`.
- `server/src/services/fresh-workspace-seed.ts`
`materializeFreshWorkspaceSeed` clones the project source at the base
ref with `--no-local`, checks out a detached commit and removes
`origin`. Uncommitted work and the branch are not carried over.
- RC-35: `server/src/services/heartbeat/workspace-preparation.ts`
rejected any reusable existing workspace while `fresh` was true,
including the attempt directory that the same run had already created
and bound.

## What Changed

- New continuation mode `reuse_issue_workspace`. At Retry admission,
after all stop proofs pass, `retainedIssueWorkspaceForRetry` checks that
the task's bound workspace is the single local directory the failed run
used, owned by the task, not a shared workspace, not under remote
storage authority, with no other lease, failed cleanup or running
workspace operation, a settled recovery generation, no workspace-export
failure, and a readable Git state rooted at that directory. Then the
Retry continues there with a fresh session. Otherwise the existing fresh
attempt is kept.
- The reuse decision consumes the generation's one alternative attempt
(`freshAttemptRunId`), sets the Retry strategy to `continue`, and
records `issue.retry_workspace_reused`.
- Environment selection pins the reused workspace binding and fails with
`retry_workspace_binding_mismatch` if the binding changed before
dispatch.
- Fresh fallback: the run's continuation context gets `priorWorkspace`
(path, branch, bounded list of uncommitted files). Git status is read
with optional locks disabled. The prompt tells the agent to inspect it
and carry over the work. The old directory is not changed.
- RC-35: preparing the same fresh attempt again after a restart reuses
the attempt directory that this run already bound.
- Reuse checks run Git through the shared workspace scan scheduler with
short deadlines, because admission can hold the issue lock.
- `doc/task-recovery.md` and `doc/execution-semantics.md` describe the
new contract.

## Verification

- `server/src/services/retry-workspace-continuity.test.ts` (embedded
Postgres, real git worktree with uncommitted edits):
- exhausted-generation Retry and blocked-recovery Retry continue in the
same worktree, `.git` file and branch intact. Both failed before the fix
(readiness was `fresh_isolated_workspace`).
- Blocked recovery without a generation and duplicate holds for one run
also reuse the worktree. A running operation orphaned by a restart of
the stopped source does not block reuse.
- The fresh attempt is kept when the workspace is unsafe: live lease,
running workspace operation, corrupt `.git`, missing directory, remote
authority, shared workspace, running export generation. `priorWorkspace`
is omitted for the unsafe writer and shared cases.
- `workspace-preparation.test.ts`:
- A `reuse_issue_workspace` Retry prepares in the original worktree with
its uncommitted file and branch.
- RC-35 red/green: re-preparing the same fresh attempt reuses its bound
directory and keeps files written before the restart. Another run still
gets `isolated_task_directory_binding_mismatch`.
- The fresh fallback sets `priorWorkspace` with the old path and
`unpublished.txt`.
- `environment-selection.test.ts`: the new mode pins the binding and
rejects a changed binding or cwd.
- `packages/adapter-utils/src/server-utils.test.ts`: the prompt names
the retained directory and its files.
- Regression files run locally: `workspace-preparation`,
`environment-selection`, `task-retry`, `quarantined-task-retry`,
`explicit-native-continuation`, `workspace-recovery`.
- Restart-chaos (`tests/restart-chaos`, local, B1+B5, codex+claude,
K1/K4/K6, concurrency 2, rc06-masked):
- Final head: wave `w-20261107T014633-s7206` on `c6776283f3`: 8/8 PASS,
all 8 restart-crossing. 5 tasks needed a Retry (t03-t07: codex B1 K6,
codex B1 K1, codex B5 K6, codex B5 K1, claude B5 K6). All five finished
in the original git worktree with `.git` and every pre-fault file
present (`workspaceMovedTo` empty, `lostFiles` empty); no "Retry keeps a
fresh attempt" log line.
- Wave `w-20261107T004829-s7205` on `29373a6b6a`: 8/8 PASS, all 8
restart-crossing. 3 tasks needed a Retry (t02, t06, t07). All three
finished in the original git worktree with `.git` and every pre-fault
file present; no "Retry keeps a fresh attempt" log line. (`cc178492ef`
only makes the operation filter stricter for run-less jobs.)
- Wave `w-20261107T000412-s7204` on `d197082107`: 8/8 PASS, 7
restart-crossing. 3 tasks needed a Retry (t02, t04, t06). All three
finished in the original git worktree (`workspaceMovedTo` is empty), R2
passed with `.git` and every pre-fault file present, and no "Retry keeps
a fresh attempt" log line appeared.
- Wave `w-20261106T231416-s7203` on the first commit: 6/6 PASS, but its
t01 Retry still moved to `isolated-workspace-attempts`. That instance
was not kept, so the exact rejection was not recorded. The likely cause
is a `running` workspace operation that a killed server left on the
stopped source (the source restarted three times). The second commit
treats such restart orphans as not live and logs the rejection reason. A
`--replay` of that t01 on `d197082107` finished in the original worktree
with its `.git` file and no attempt directory.
- Review follow-ups in `d197082107`, `29373a6b6a`, `cc178492ef` and
`c6776283f3` (run-less workspace jobs still block reuse; red/green
covered by the `running_operation` case): holds are grouped by source
run; the readiness fallback (blocked recovery without a generation) also
reuses the task workspace; Git probes go through the shared scan
scheduler with 10-15 s deadlines; `priorWorkspace` is only set for a
task-owned directory with no other writer; the reuse rejection reason is
logged; `priorWorkspace` uses the same task-owned, settled,
single-writer predicate as reuse; Git probes share one budget per
workspace; the RC-35 check is a pure path check; renames are parsed from
either porcelain column.

## Risks

- A Retry now writes into the old directory instead of a new one. The
checks above prevent a second writer. A stale binding fails the run with
`retry_workspace_binding_mismatch`; it does not write to another
directory.
- If the cause of the failure was inside the workspace itself, reuse
could repeat it. Workspace-export failures, restore failures and
required workspace recovery keep the fresh attempt.
- A workspace operation of the stopped source that started before the
source settled and before the current server process no longer blocks
reuse (a restart orphan). Operations with no run, of another run, or
started in the current process still block it.
- `priorWorkspace` is an optional new field in the continuation
envelope. Older adapters ignore it.

## Model Used

- Claude Opus 5.5 (`claude-opus-5-5`), Anthropic, used through Claude
Code with tool use (shell, file edits, test runs).

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have searched GitHub for duplicate or related PRs and linked
them above
- [x] I have either (a) linked existing issues with `Fixes: #` / `Closes
#` / `Refs #` OR (b) described the issue in-PR following the relevant
issue template
- [x] I have not referenced internal/instance-local Paperclip issues or
links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip`
URLs)
- [x] My branch name describes the change (e.g. `docs/...`, `fix/...`)
and contains no internal Paperclip ticket id or instance-derived details
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [ ] All Paperclip CI gates are green
- [ ] Greptile is 5/5 with no open P2s, recommendations, or follow-ups
- [x] I will address all Greptile and reviewer comments before
requesting merge

🤖 Generated with [Claude Code](https://claude.com/claude-code)

---------

Co-authored-by: Claude Opus 5.5 <noreply@anthropic.com>
2026-11-06 20:27:22 -06:00
DottaandClaude Opus 5.5 a894b11a2b fix(runner): retry a rejected runner suspension and log every cleanup quarantine (#19653)
## Thinking Path

> - Paperclip is the open source app people use to manage AI agents for
work
> - A native run's close must prove that its runner durably suspended
before the session's next run may start. If it cannot, the runtime
quarantines the session (`NativeSessionCloseUnrecoverableError`)
> - In a restart chaos storm, an ACPX Claude run succeeded and its
normal close quarantined its own session. The follow-up run on that
session failed 2 s later with `native_session_cleanup_quarantined`, and
no control-plane restart came between the two runs
> - The close sent `runner.suspend` once, the ACPX sidecar rejected it
right after the turn completed, and the barrier gave up at the first
rejected command. No log line showed the quarantine or its cause
> - This pull request retries a rejected suspension within the close
deadline, and logs every cleanup quarantine with its cause when it is
created
> - The benefit is that a successful run no longer blocks its own
follow-up because of a one-time suspension rejection, and any remaining
quarantine can be traced

## Linked Issues or Issue Description

**What happened?**
Run A (ACPX Claude) succeeded. The run log of its close shows:
- `runner did not prove durable suspension before checkpoint`
- `native_session_settlement_incomplete
{"runnerSuspended":false,"providerDrained":true,"suspensionState":{"commandStatus":"failed","runnerLifecycle":"suspended",...},"semanticTools":{"pending":[]},"finalProviderState":{"activeProviderTurnId":null,"providerSettled":true}}`

The runner journal shows `runner.drain` completed, then `runner.suspend`
failed with `failed to suspend ACPX provider: ACPX sidecar command
session.suspend was rejected (retryable=false,
classification=unclassified)`. The follow-up run B on the same session
was created 200 ms after A finished and failed 2 s later at admission
(`retryQuarantinedSessionCleanups`, operator recovery branch). The
server log had no line for the quarantine. One Retry completed the task.

**Steps to reproduce**
1. Run an ACPX task whose sidecar rejects the first `session.suspend`
after the turn completes.
2. Start a follow-up run on the same session.

**Expected behavior**
The close asks again, proves suspension, and the follow-up runs. If a
quarantine is still needed, it is logged with its cause.

**Actual behavior**
The close fails on the first rejection, quarantines the session, and the
follow-up fails with no logged cause.

## What Changed

- `runner/.../durable/runner.rs` (`process_command`): a failed
`runner.suspend`, on first execution or replay, now keeps the runner in
`Continue` instead of `Suspend`. Before, the runner recorded `suspended`
over a provider whose session was still open, then exited. The RC-34
journal shows exactly that: runner lifecycle `suspended`, ACPX provider
`session_open`. A failed `runner.shutdown` still stops the runner.
- `durable-prp-control-plane.ts`: a failed or rejected `runner.suspend`
now lifts the connection's terminal-lifecycle fence, so the next pending
command (the fresh suspend) is delivered on the same connection.
Completed suspensions and every shutdown keep the fence. New test:
"delivers a fresh suspension after a rejected one on the same
connection". Before the fix, the retry was never sent and the test timed
out waiting for the frame.
- `runnerd-codex-transport.ts` (`awaitRunnerSuspensionBarrier`): after a
rejected `runner.suspend`, the barrier sends a fresh suspend command, up
to 3 attempts, 250 ms apart, inside the same close deadline. An exited
runner or a spent budget still fails closed. A rejection changes no
state: the runner returns before it records suspension.
- `native-session-runtime.ts`: new
`onNativeSessionCleanupQuarantined(listener)`. It is called when a
cleanup quarantine is created or escalates to operator recovery, with
company, run, issue, session, `operatorRecoveryRequired`, a bounded
cause (error name, code, message) and bounded settlement facts.
- `server`: `logNativeCleanupQuarantines` logs each quarantine as a
warning. The subscription is process-wide and installed once, so closes
that fail during shutdown, after HTTP closes, are still logged.

## Verification

- Red before the change: `pnpm --filter @paperclipai/paperclip-runner
exec vitest run src/live/runnerd-codex-transport.test.ts -t "rejected
suspension"`.
  - "retries a rejected suspension…" got `false`.
  - "stops retrying…" saw 1 attempt instead of 3.
- Green after the change: both pass.
- Rust: new test
`rejected_suspend_keeps_the_runner_serving_its_controller` covers a
failed suspend, its replay, and an accepted retry with a fresh command.
`failed_lifecycle_commands_replay_their_terminal_transition` now expects
`Continue` for suspend and `Shutdown` for shutdown. The `pnpm run
check:runner` unit suites pass (559). `acpx_park_readiness` has two
timing tests (`< 500ms`) that fail at this host load on unchanged master
as well.
- New runtime test: "announces every cleanup quarantine with its cause
when it is created" (operator-required quarantine, cause and settlement
reported once). `src/native-session-runtime.test.ts` passes (212).
- The suspension cases in `runnerd-codex-transport.test.ts` pass, except
"proves local suspension after an event backlog… (1024 suffix deltas)".
That case also times out on unchanged master at this host load (27–35);
I confirmed this by stashing the change and rerunning.
- Server `tsc --noEmit` passes after the runner package build.

## Risks

- A provider that keeps rejecting suspension now gets three tries
instead of one, within the existing close deadline. The final outcome
and quarantine are unchanged.
- The cause of the ACPX sidecar's first rejection is not proven. The
logged evidence fits the sidecar's "not at a safe suspension point"
guard (`turnId`, tools or inputs still set) racing the just-completed
turn. This change makes close tolerate it. It does not change the
sidecar.
- Log volume: one warning per quarantine.
- The Rust change ships in the runner binary. Hosted images need a
rebuild to pick it up.
- After a failed suspend, the runner stays alive with its provider. If
every retry fails, close still treats suspension as unproven and kills
the owned runner process, exactly as before.

## Model Used

- Claude Opus 5.5 (`claude-opus-5-5`), Anthropic, with tool use and code
execution in Claude Code.

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have searched GitHub for duplicate or related PRs and linked
them above
- [x] I have either (a) linked existing issues with `Fixes: #` / `Closes
#` / `Refs #` OR (b) described the issue in-PR following the relevant
issue template
- [x] I have not referenced internal/instance-local Paperclip issues or
links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip`
URLs)
- [x] My branch name describes the change (e.g. `docs/...`, `fix/...`)
and contains no internal Paperclip ticket id or instance-derived details
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [ ] All Paperclip CI gates are green
- [ ] Greptile is 5/5 with no open P2s, recommendations, or follow-ups
- [x] I will address all Greptile and reviewer comments before
requesting merge

Refs #19532, #19609.

🤖 Generated with [Claude Code](https://claude.com/claude-code)

---------

Co-authored-by: Claude Opus 5.5 <noreply@anthropic.com>
2026-11-06 20:06:54 -06:00
DottaandClaude Opus 5.5 c37bc749ac fix(native): keep restart continuations alive through early results and repeat restarts (#19699)
## Thinking Path

> - Paperclip is the open source app people use to manage AI agents for
work
> - Native runs continue a turn lost to a control-plane restart once, in
the same conversation (#15297, #19501)
> - In restart storm 3, two Codex runs each crossed one restart and
still needed a Retry
> - The continuation was attempted, but the driver failed it with
`turn_binding_mismatch`, and the run then reported "runnerd exited
before provider turn startup"
> - A second restart that loses the continuation turn itself also needed
a Retry, because the one-shot marker was already used
> - A restart should not cost a click when continuing is safe, and a
failure should name its real cause
> - This pull request fixes the start race, reports the driver's own
failure, and gives each admitted restart its own continuation
> - The benefit is that interrupted tasks finish without a Retry, within
the existing recovery budget

## Linked Issues or Issue Description

Refs #19501, #15297, #19658, #19539

**What happened?**

Restart storm 3 (seed 7103, RC06 mask on, load 9–12). Codex B5 Retry
runs crossed one K1 restart mid-turn. After the restart, recovery
resumed the dead runner. The runner restored the conversation and
recorded `turn.failed` with `provider_turn_lost_on_restore`
(`recoverable: true`). The control plane started the same-conversation
continuation (`resumeInterruptedTurn` → `startTurn`). About 1 s later
the transport closed with `protocol_failure:turn_binding_mismatch`. The
run failed as `native_runner_process_exited: runnerd exited before
provider turn startup`. The task needed another Retry.

I reproduced it with the focused cell (`--workloads B5 --faults K1
--triggers retry`) and a temporary diagnostic. The failure is "Provider
semantic result did not name the active turn": a `paperclip/runResult`
reached the Codex driver while the continuation's `turn/start` was still
pending and no turn was bound. The driver waits for a pending start
before it handles `turn/completed`, but not before it handles
`paperclip/runResult`.

**Expected behavior**

After a restart that loses a turn, the run continues automatically when
that is safe. Each admitted restart attempt can continue once, within
the provider-attempt budget. A failure names its real cause.

**Steps to reproduce**

1. Run `node cli/node_modules/tsx/dist/cli.mjs
tests/restart-chaos/main.ts --env local --adapters codex --workloads B5
--faults K1 --triggers retry --tasks 2 --concurrency 2 --seed 4040
--rc06-masked`.
2. When a lost turn's continuation receives a semantic result before its
start settles, the run fails with `turn_binding_mismatch` and the task
needs a Retry. The race is intermittent: 1 of about 14 lost turns in my
runs.

**Root cause**

-
`packages/paperclip-runner/src/drivers/codex/codex-session-notifications.ts`:
the `paperclip/runResult` branch checked the active-turn binding without
waiting for `state.turnStartSettled`. The `turn/completed` branch
already waits.
- `codex-harness-session.ts` `startTurn`: the driver's own protocol
failure closed the transport. The pending start then reported the runner
exit, which hid the cause.
- `codex-session-terminal.ts` `mapTerminalTurn`: a consumed one-shot
marker blocked every later continuation in the run, even when the newly
lost turn was that continuation itself.

The one-continuation allowance is per run, not per issue or session
lineage: attaching a new run resets the marker. The storm runs did
attempt their continuation; the start race made it fail.

## What Changed

- Codex driver: a `paperclip/runResult` waits for a pending turn start
to settle before it is bound, like a terminal.
- Codex driver: when this session's own protocol failure ends a pending
turn start, `startTurn` throws `codex_turn_start_protocol_failure:
<code>: <message>` instead of the runner exit. CodexRpc errors and
protocol-integrity errors keep their own types. The server now
classifies this as `native_session_interrupted` instead of
`native_runner_process_exited`; both are retryable.
- A later restart that loses the continuation turn itself re-arms the
one-shot marker: the driver resets it as it was before the first
continuation. It does this when it maps the lost terminal, including
during recovery from a checkpoint taken while the continuation ran. The
checkpoint gate `nativeRestartInterruptedTurnId` stays strict: a
consumed marker still means the allowance is used. Each continuation
still needs an admitted dead-runner restart. The existing
provider-attempt budget bounds the repeats, and an exhausted budget
still blocks with Retry.
- `doc/execution-semantics.md`: an additive paragraph.

## Verification

Red before the fix, green after:

- `codex-app-server-driver.events.test.ts` "binds a semantic result that
arrives before its pending turn start settles". Red: `session.failed`.
Green: the result binds to `turn-1` and the turn completes.
- `codex-app-server-driver.events.test.ts` "names its own protocol
failure when that failure ends a pending turn start". Red: "runnerd
exited before provider turn startup". Green:
`codex_turn_start_protocol_failure: turn_binding_mismatch`.
- `codex-app-server-driver.recovery.test.ts` "offers another restart
continuation when a later restart loses the continuation turn itself".
Red: `null`. Green: `turn-2`. A checkpoint with a consumed marker still
returns `null`.
- `codex-app-server-driver.recovery.test.ts` "re-arms the continuation
when recovery finds the checkpointed continuation turn lost". This
recovers from a checkpoint taken during the continuation, then starts
the next continuation. Red without the re-arm (the marker stays
consumed); green with it.
- `native-runner-restart-recovery.integration.test.ts`: the same
checkpoint (continuation active, consumed marker naming it) is claimed
as `resume_dead_runner`. This is regression coverage.

Suites run locally on the final code:

- Runner: Codex driver, `native-session-runtime`,
`runnerd-restart-continuation` and contracts (745 tests).
- Server: `native-runner-restart-recovery.integration.test.ts`.
- `tsc` for the runner tests and the server.
- A few real-process tests timed out at about 6 s while six live agents
ran. Each passed when rerun alone. The settlement suite passed both with
and without this change at the same load.

Live (local, real Codex, macOS arm64), focused restart-chaos cell
`--adapters codex --workloads B5 --faults K1 --triggers retry,time
--tasks 6 --seed 4042 --rc06-masked`: 6/6 crossed a restart and passed.
R1 passed for all 6, so each continued without a Retry.

## Risks

- A run can now continue more than once in the same conversation, once
per admitted restart. Each continuation asks the agent to reconcile
unfinished actions before repeating them. The provider-attempt budget
still caps the repeats.
- A semantic result that arrives during a pending start now waits for
that start. If the start fails, the result is still rejected by the
existing binding check.
- The start race was intermittent (1 of about 14 lost turns), so the
live cell shows absence of the failure, not a forced repro. The driver
regression reproduces it deterministically.
- No schema, API or migration change.

## Model Used

- Anthropic Claude Opus 5.5 (`claude-opus-5-5`) in Claude Code, with
tool use, code execution, and extended reasoning.

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have searched GitHub for duplicate or related PRs and linked
them above
- [x] I have either (a) linked existing issues with `Fixes: #` / `Closes
#` / `Refs #` OR (b) described the issue in-PR following the relevant
issue template
- [x] I have not referenced internal/instance-local Paperclip issues or
links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip`
URLs)
- [x] My branch name describes the change (e.g. `docs/...`, `fix/...`)
and contains no internal Paperclip ticket id or instance-derived details
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [x] All Paperclip CI gates are green
- [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups
- [x] I will address all Greptile and reviewer comments before
requesting merge

🤖 Generated with [Claude Code](https://claude.com/claude-code)

---------

Co-authored-by: Claude Opus 5.5 <noreply@anthropic.com>
2026-11-06 19:55:18 -06:00
DottaandClaude Opus 5.5 9a52a2dfeb fix(native): retry ACPX session.open startup timeouts and give cold Claude a 60 s bound (#19661)
## Thinking Path

> - Paperclip is the open source app people use to manage AI agents for
work.
> - Native runs start an ACPX provider through Runner. `session.open`
opens the provider session before any prompt.
> - On a loaded host, a cold ACPX Claude `session.open` took longer than
its 30-second bound. The controller reported
`runner_local_connect_failed: PRP command session.open timed out`.
> - The server classified this as the generic
`native_session_interrupted` with `ambiguous_state`, so the task was
blocked at once. A person had to click Retry, sometimes several times.
In one restart-chaos storm, one task needed three Retry clicks, and on
another task both Retry runs timed out too.
> - The server already has a bounded same-run bootstrap retry for
failures that come before provider work (#18854). It did not recognize
this timeout. The 30-second bound also cut off normal slow startups.
> - This pull request gives cold ACPX Claude a 60-second `session.open`
bound, like Pi and OpenCode (#19487). It also retries a startup
`session.open` timeout automatically on the same run, from clean state.
> - The benefit is that a slow cold start on a busy host completes, or
retries itself, instead of waiting for a person.

## Linked Issues or Issue Description

Refs #18854 (bounded bootstrap retry for definite `session.open`
failures), #19487 (60-second cold OpenCode admission), #19665 (the
bootstrap proof that this change reuses).

**What happened?**

ACPX Claude runs failed with `runner_local_connect_failed: PRP command
session.open timed out` about 35 to 40 seconds after they started. The
coordinator recorded `native_session_interrupted` with `recoveryMode:
"ambiguous_state"` and `providerSessionEstablished: false`. The task was
blocked with a board-owned action. No provider event and no checkpoint
existed. The host 1-minute load was 17 to 44, sometimes with no restart
nearby.

**Expected behavior**

A normal slow cold start completes. A `session.open` that still times
out during runner startup, with no provider event, no checkpoint and no
turn, retries on the same run with backoff. At most two automatic
attempts follow the first. A run where provider work may have started is
never retried automatically.

**Steps to reproduce**

1. Run ACPX Claude tasks on a host with a 1-minute load of about 25 or
more.
2. Observe a run fail after about 35 to 40 seconds with `PRP command
session.open timed out`.
3. Observe the task blocked with `ambiguous_state` and a manual Retry.

**Paperclip version or commit**

`master` at `6c7cc2c5d6`.

## What Changed

The bound (evidence below):

- `coldAdmissionTimeoutMs` gives cold ACPX Claude 60 seconds (live
adoption keeps 30 seconds). The runner's Rust sidecar
`session_open_timeout` and the sidecar's provider handshake
(`acpxSessionHandshakeTimeoutMs`) give Claude and Pi 60 seconds too. All
three bounds must agree, or the shortest one fails first. Claude's warm
run attachment uses the same cold budget, like Pi.

The automatic retry:

- `nativeSessionFailureSourceCode` returns
`provider_session_open_timeout` only for exactly `<startup failure
code>: PRP command session.open timed out`. The startup failure codes
are `runner_local_connect_failed`, `runner_direct_wss_failed` and
`runner_ingress_unavailable`. The transport uses them only before
startup completes. After startup the code is
`provider_transport_failed`, which is unchanged.
- `nativeProviderRecoveryEvidence` treats the cause as pre-session.
Durable evidence still decides: a bootstrap retry needs no provider
event (`session.started`, `turn.started` and the others) and no
checkpoint. The existing budget applies: three attempts with backoff of
about 30 seconds, then about 60 seconds. When the budget is used, the
task is blocked with the existing "Provider startup failed on 3 attempts
before any provider work began" action.
- A timeout is indeterminate: the runner can open a provider session
after the controller stops waiting. Live runs showed both leftovers, so
the retry now starts from clean state:
- `prepareNativeSessionOpenTimeoutRetry` (server) runs when the failure
settles. It quarantines a local runner root only when the
restart-recovery proof (`runnerdStateProvesIncompleteBootstrap`, #19665)
shows that no turn began and every recorded process is gone. Any other
root, and any remote runner, stays `ambiguous_state` as before.
- `resetAbandonedBootstrapRecord` (runner ACPX adapter) runs on a fresh
open (no runner-recorded identity). If ACPX has a saved record for the
session key with no messages, no prompt and no events, it is marked
`reset_on_next_ensure`. Claude saves nothing before the first prompt, so
reusing such a record fails the first turn with
`session_resume_required`. A record that holds any conversation is
unchanged.
- A chat retry of an exhausted `provider_session_open_timeout` run is
accepted like the other pre-provider causes.
- `doc/execution-semantics.md` and the Runner README describe the cause
and the bound.

## Verification

**Measured startup distribution** (ACPX Claude
`runner.session.bootstrap` / `runner.session.startup` spans from
restart-chaos run events, 1-minute load 8 to 44):

| Source | Bound | Successful cold bootstraps (s) | Failures |
| --- | --- | --- | --- |
| Earlier storm evidence | 30 s | 2.9, 4.7, 7.4, 8.6, 8.7, 26.2, 27.4,
27.6, 29.2 | startups ended at 34.9 to 40.3 s (the 30 s `session.open`
bound plus spawn and `run.prepare`) |
| This branch, wave s3601 | 60 s | 6.3, 7.8, 8.1, 13.4, 14.4, 22.3,
22.8, 22.9, **37.3** | 0 `session.open` timeouts |
| This branch, wave s3602 | 60 s | 13 samples, p50 10.5, p90 17.9, max
25.7 | 0 `session.open` timeouts |
| This branch, wave s3610 (final head, load 28 to 42) | 60 s | 10.4,
11.3, 11.7, 12.0, 13.3, 14.2, 29.6, **30.4**, **30.9** | 0
`session.open` timeouts |

Under load, successes clustered just under 30 s and failures sat just
above it, so the 30 s bound was cutting the distribution off. With 60 s,
cold starts of 30.4, 30.9 and 37.3 s succeeded that the old bound would
have failed. 60 s is about 1.6 times the largest observed success, and
it matches Pi and OpenCode.

**Live restart-chaos waves** (local, ACPX Claude only, 4 in flight,
`--rc06-masked`, real provider, K1/K2 restarts):

- s3601 (8 tasks, load 19 to 32): 7/8 PASS. No `session.open` timeout.
The one failure is an R3 Retry signature after K1
(`native_restart_recovery_blocked`), not this cause.
- s3602 (8 tasks, load 17 to 39): 8/8 PASS. No `session.open` timeout.
Three Retry clicks were for `native_provider_terminal_failed`
(`provider_turn_lost_on_restore`), a different restart signature.
- Forced timeout, s3609 (4 tasks, B5, K2): a local, uncommitted fault
injection gave every other cold startup a 1.5 s `session.open` deadline.
Result 4/4 PASS. Run 4fe6537a timed out, retried itself on the same run,
and then succeeded through four K2 restarts with no person involved. Run
02799a85 hit the injection three times in a row; the budget stopped it
after attempt 3, and one Retry completed it.
- Before the two clean-state fixes, the same forced wave (s3607 and
s3608) showed the retry reusing leftover state: `turn.start` failed with
`session_resume_required`, and then "ACPX session is not open". Those
runs are the red evidence for the two clean-state fixes.
- Final head, s3610 (8 tasks, K1/K2, no injection, load 28 to 42): **8/8
PASS**, 0 `session.open` timeouts. The one Retry click (t06) was for
`provider_turn_lost_on_restore`, a different restart signature.

**Tests:**

- Red before the fix: `native-startup-retry.integration.test.ts -t
timeout` (embedded PostgreSQL, real executor, real resume claim). The 3
retry cases failed with `native_session_interrupted` /
`ambiguous_state`.
- Green: `native-startup-retry.integration.test.ts` passes 36/36. New
cases:
- for each startup failure code, a timeout retries on the same run with
backoff, keeps the task `in_progress` with an agent-owned
`resume_native_run` wake, and blocks after attempt 3 with a board-owned
action;
- no automatic retry when `session.started` or `turn.started` is
durable, when the code is `provider_transport_failed`, or when another
command timed out;
- a real runner root with an opened session and no turn is quarantined;
a root with a turn command stays `ambiguous_state` and intact; a remote
runner is never prepared.
- `codex-runtime-adapter.test.ts`: 113 pass. New cases: a 45 s delayed
handshake is admitted for Claude and rejected for Codex; a
never-prompted record is reset only on a fresh open; records with
messages, a prompt or events are kept.
- `abandoned-bootstrap-record.test.ts` (real `createAcpRuntime` with
`createRuntimeStore` and a controlled ACP peer that, like Claude, cannot
load a never-prompted session): without the reset, a fresh open reuses
the record and the first turn fails with SESSION_RESUME_REQUIRED after
`session/load`. With the reset, the provider receives `session/new` and
the turn completes.
- `vitest run src/drivers/acpx src/cli` in the runner: 107 files, 1,935
tests pass.
- `native-session-executor.test.ts -t "session.open|startup|bootstrap"`:
144 pass. `runnerd-codex-transport.test.ts -t "cold process admission"`:
4 pass. `cargo test -p paperclip-runner-core --lib admission_budget`
passes.
- `npx tsc --noEmit -p server` and the runner `tsc -p
tsconfig.test.json` pass.

## Risks

- **This changes Runner Rust code. The Daytona runner image must be
rebuilt after merge** for remote sandboxes to get the 60-second sidecar
bound. Until then, a remote Claude `session.open` still fails at 30
seconds in the sidecar (as a definite failure, which already retries). A
remote timeout stays operator-owned, because a remote root cannot be
proven clean here.
- A cold ACPX Claude start that hangs now fails after about 60 seconds
instead of 30 seconds.
- A timed-out `session.open` may have created an empty provider session.
No prompt was sent. The retry quarantines that runner root and asks ACPX
for a new session.
- Same-run retries of a fresh-attempt Retry run can still fail with
`isolated_task_directory_binding_mismatch`. This is RC-35 (workspace
re-preparation), which has its own fix in progress.
- No schema or API change. The new error code appears on runs and in run
error codes.

## Model Used

Claude Opus 5.5 (`claude-opus-5-5`), Anthropic, through Claude Code with
tool use (shell, file edits, test execution).

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have searched GitHub for duplicate or related PRs and linked
them above
- [x] I have either (a) linked existing issues with `Fixes: #` / `Closes
#` / `Refs #` OR (b) described the issue in-PR following the relevant
issue template
- [x] I have not referenced internal/instance-local Paperclip issues or
links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip`
URLs)
- [x] My branch name describes the change (e.g. `docs/...`, `fix/...`)
and contains no internal Paperclip ticket id or instance-derived details
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [x] All Paperclip CI gates are green
- [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups
- [x] I will address all Greptile and reviewer comments before
requesting merge

🤖 Generated with [Claude Code](https://claude.com/claude-code)

---------

Co-authored-by: Claude Opus 5.5 <noreply@anthropic.com>
2026-11-06 19:37:11 -06:00
DottaandClaude Opus 5.5 20fc37778f fix(runner): keep settled OpenCode sessions across a controller proxy rebuild (#19641)
## Thinking Path

> - Paperclip is the open source app people use to manage AI agents for
work.
> - The native Runner keeps an OpenCode conversation in durable state,
so a task can continue after a control-plane restart.
> - Saved OpenCode state binds one digest of the launch profile: the
Node command, the proxy bundle and the OpenCode executable, each by path
and SHA-256.
> - The Node command and the proxy bundle are controller runtime. A
rebuild or deploy between a hard kill and recovery replaces their bytes.
> - The recovery probe then refused a settled conversation with
`provider_state_incompatible`, although the OpenCode release and the
conversation were unchanged.
> - ACPX already re-binds a settled session after a Runner upgrade
(#18879). OpenCode did not.
> - This pull request records the OpenCode release digest in saved state
and re-binds a settled session when that release is unchanged.
> - The benefit is that a task continues automatically after a restart
that also changed the controller build. A real release change still
fails closed.

## Linked Issues or Issue Description

Refs #19558, #19501, #18879.

**What happened?**

A restart-chaos wave killed the control plane with SIGKILL while an
OpenCode run was settled between turns. The first recovery attempt
restored the session. The controller's runner `dist` was then rebuilt in
the same checkout. The next recovery attempt failed in the
`runner.drain` resume probe with `OpenCode runner launch profile changed
across durable recovery` (`native_provider_state_incompatible`). The
saved state matched the original proxy bytes exactly. Only the proxy
bundle bytes had changed. The OpenCode executable, the paths and the
model were the same.

**Expected behavior**

A settled OpenCode session continues after a restart when only
controller runtime bytes changed. A changed OpenCode release, or a
session with work in flight, fails closed. The existing disposition then
offers one Retry that continues in a fresh provider session.

**Steps to reproduce**

1. Start an OpenCode run and let it settle between turns.
2. Kill the runner and the controller.
3. Replace the qualified proxy bundle with valid new bytes (rebuild or
deploy).
4. Recover the run. The resume probe fails with
`provider_state_incompatible`.

**Paperclip version or commit**

`master` at a08f9494ea.

## What Changed

- `CodexProviderState` records `opencodeReleaseDigest`: the SHA-256 of
the qualified OpenCode executable, which owns the saved conversation.
- Restore re-binds a saved OpenCode session to the current launch
profile only when all of these are true:
  - The saved release digest equals the current executable digest.
- The saved configuration names the current command and proxy paths (the
existing binding check).
- The session is settled: no active or ambiguous turn, startup attempt,
receipt-limit interrupt, pending tool call, undelivered or queued
provider event, or working goal. The lifecycle is `prepared`,
`session_open`, or `provider_exited` (an observed idle exit that restore
already restarts).
- Every other mismatch keeps the exact binding and fails closed with
`provider_state_incompatible`. State written before the new field has no
release digest, so it stays exact.
- Session start still verifies every launch artifact and the restored
provider identity.
- `docs/durable-recovery.md` documents the OpenCode re-bind rule next to
the ACPX rule.
- The #19558 regression that required refusal of a new proxy for a
prepared run now asserts the re-bind. The remote pack retention from
#19558 is unchanged.

## Verification

- Red first:
`settled_opencode_session_continues_after_a_controller_proxy_rebuild`
failed on unchanged production code with the production message, from
the same `runner.drain` probe. It passes after the change. It also
checks that the conversation is resumed (`thread/resume`), that a new
turn completes, and that the re-bound digest persists.
- Counter-tests that still refuse: changed OpenCode release on a settled
session (state bytes unchanged), proxy rebuild with an active turn
(state bytes unchanged), and legacy state without a release digest. The
existing executable-drift test still refuses.
`exited_opencode_session_continues_after_a_controller_proxy_rebuild`
covers a kill after an observed idle provider exit (red before the
follow-up commit, green after).
- `cargo test -p paperclip-runner-core --test native_provider_backend`:
45 passed (one unrelated Pi lifetime-fence test flaked once under load
35 and passed 3/3 alone). `cargo test -p paperclip-runner-core --lib
provider_backend`: 145 passed. `cargo fmt` and `cargo clippy` are clean
for the changed code.
- Live restart-chaos waves (local env, OpenCode only, concurrency 2,
`--rc06-masked`). A drift injector appended a valid comment to the local
OpenCode proxy bundle after every fault took the controller down, so
each recovery saw a changed proxy digest.
- Wave 1, seed 3201, 4 tasks, 4 × K1: 3 tasks finished automatically.
The fourth was killed with a turn in flight. Recovery failed closed with
`native_provider_state_incompatible`, as designed. One Retry worked on
the first click and completed the task (R3 pass). That task's grade is
`R5:silent_dead_run`: the Retry run was quiet for 180 s during the B5
benchmark. This is not a launch-profile failure.
- Wave 2, seed 3207, 3 tasks, K1 × 2 and K6: 3/3 pass. The K6 task also
had a turn in flight. It failed closed and one Retry completed it.
- In both waves every kill landed with a turn in flight or before a
durable session. The settled re-bind path was therefore not reached
live. The Rust executor regression above covers that path.
- Environment: macOS arm64, Node 26.4.0, local env, load average 17–39.

## Risks

- A settled OpenCode session now runs on the current proxy bundle after
a controller upgrade. The proxy keeps no state of its own; OpenCode owns
the conversation store. ACPX already accepts the same trade-off for its
sidecar.
- Sessions with work in flight are still refused. This is conservative
and matches ACPX.
- Runs saved by an older Runner have no release digest, so they keep the
old exact behavior once.
- Cursor Cloud keeps its exact binding. It is out of scope.

## Model Used

Anthropic Claude, model ID `claude-opus-5-5`, used through Claude Code
with tool use (shell, file edits) and extended reasoning.

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have searched GitHub for duplicate or related PRs and linked
them above
- [x] I have either (a) linked existing issues with `Fixes: #` / `Closes
#` / `Refs #` OR (b) described the issue in-PR following the relevant
issue template
- [x] I have not referenced internal/instance-local Paperclip issues or
links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip`
URLs)
- [x] My branch name describes the change (e.g. `docs/...`, `fix/...`)
and contains no internal Paperclip ticket id or instance-derived details
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [ ] All Paperclip CI gates are green
- [ ] Greptile is 5/5 with no open P2s, recommendations, or follow-ups
- [x] I will address all Greptile and reviewer comments before
requesting merge

🤖 Generated with [Claude Code](https://claude.com/claude-code)

---------

Co-authored-by: Claude Opus 5.5 <noreply@anthropic.com>
2026-11-06 19:18:29 -06:00
DottaandClaude Opus 5.5 e05bced39f fix(runner): adopt an accepted Codex turn whose start outlives the bound (#19608)
## Thinking Path

> - Paperclip is the open source app people use to manage AI agents for
work
> - Native Codex runs submit each turn through runnerd. The transport
answers `turn/start` only after it sees the provider's `turn/started`
for the turn the durable command result named
> - That wait has a fixed 30 s bound
> - At host load around 50, after two hard restarts, Codex accepted a
turn and started it about 27 s after the command, beyond the bound once
scheduling delay was added. The transport failed the start, but the
provider kept running the turn and made a tool call
> - No controller owned that turn. Its close could not settle, and the
task's Retry was refused at once
> - This pull request adopts the accepted turn when the bound expires,
but only when the runner still reports that turn active
> - The benefit is that a slow but live provider turn stays owned, so
its events, Stop and close keep working

## Linked Issues or Issue Description

**What happened?**
In a restart chaos replay (two SIGKILLs about 20 s apart, local runner,
real Codex, load 50), a resumed run failed with `runnerd did not report
the provider turn identity`. The runner journal shows the durable
`turn.start` result with the provider turn id, then `turn.started` for
that same turn 27 s later, followed by items and a semantic tool call.
The run's close then stayed incomplete (`semanticResultsSettled:
false`), and a Retry of the task failed with
`native_session_cleanup_quarantined: prior session cleanup remains
incomplete`.

**Steps to reproduce**
1. Use a Codex provider that answers `turn/start` and emits
`turn/started` later than the transport's turn-start bound.
2. Start a turn through the runnerd transport.

**Expected behavior**
The accepted turn is owned and observed by the controller.

**Actual behavior**
The start fails after the bound, while the provider still runs the turn.

## What Changed

- `runnerd-codex-transport.ts` (`#startTurnWork`):
- Near the end of the bound, if `turn/started` has not arrived, the
transport reads an authenticated `session.snapshot`. It reserves at most
5 s (or a quarter of the bound) for this read.
  - It binds the accepted turn only when the turn is provably live:
    - the runner reports that exact provider turn as active;
- the runner attributed no provider launch
(`provider_startup_ownership`) to a command after this `turn.start`;
- for a local provider, the same process (pid and start time) that
accepted the turn is still alive.
- Otherwise it keeps waiting for `turn/started` until the configured
bound and fails exactly as before. A turn lost across a provider
relaunch keeps the same-run resume path.
- `fake-codex-app-server.rs`: new test options `--turn-started-delay-ms`
(a delay between the `turn/start` response and `turn/started`) and
`--exit-before-turn-started`.

## Verification

- Red before the fix: `pnpm --filter @paperclipai/paperclip-runner exec
vitest run src/live/runnerd-codex-transport-deadlines.test.ts -t "adopts
a durably accepted"` (real runnerd and fake Codex, 12 s start delay, 8 s
bound) failed with `runnerd did not report the provider turn identity`.
This is the replay's error.
- Green after the fix: the start resolves with `provider-turn-1`, and
`turn/started` and the turn's terminal follow in order. There is one
provider `turn/start`.
- Negative case (`does not adopt an accepted turn the runner no longer
reports active`): the provider accepts the turn and exits before
starting it. The runner relaunches the provider and still lists the
turn, but the turn is not adopted. The start fails within the bound plus
scheduling slack. A snapshot-only version of this change adopted that
dead turn, and it hung for 20 s with no terminal.
- `src/native-session-runtime.test.ts`,
`src/live/runnerd-restart-continuation.test.ts` and
`src/live/runnerd-codex-transport-deadlines.test.ts` pass. The package
typecheck passes.
- Live chaos replays: results are added in a comment.

## Risks

- A provably live provider that accepts a turn and never starts it now
waits on the turn's own timeout and Stop paths instead of failing after
30 s. A dead or relaunched provider still fails at the bound.
- Remote runners can adopt only on the runner's own evidence (active
turn and no later provider launch), because their provider pid is not a
local process.
- A stale `turn/started` for a previous turn that arrives after the new
command result is still rejected. The transport cannot attribute that
turn's following events, so rejecting it fails only the transport, and
the same-run resume continues the task (seen in the replay). Delivering
it would attach the old turn's items and usage to the new turn.

## Model Used

- Claude Opus 5.5 (`claude-opus-5-5`), Anthropic, with tool use and code
execution in Claude Code.

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have searched GitHub for duplicate or related PRs and linked
them above
- [x] I have either (a) linked existing issues with `Fixes: #` / `Closes
#` / `Refs #` OR (b) described the issue in-PR following the relevant
issue template
- [x] I have not referenced internal/instance-local Paperclip issues or
links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip`
URLs)
- [x] My branch name describes the change (e.g. `docs/...`, `fix/...`)
and contains no internal Paperclip ticket id or instance-derived details
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [ ] All Paperclip CI gates are green
- [ ] Greptile is 5/5 with no open P2s, recommendations, or follow-ups
- [x] I will address all Greptile and reviewer comments before
requesting merge

Refs #19532, #19539.

🤖 Generated with [Claude Code](https://claude.com/claude-code)

---------

Co-authored-by: Claude Opus 5.5 <noreply@anthropic.com>
2026-11-06 19:06:45 -06:00
DottaandClaude Opus 5.5 785ead5c7a fix(tasks): hold a Retry while the task's own native session close is retained (#19609)
## Thinking Path

> - Paperclip is the open source app people use to manage AI agents for
work
> - When a native provider session close fails, the runner keeps a
cleanup owner or quarantine in process memory. Its admission gate
refuses new sessions for that task (scoped to the task since #19532)
> - The server could not see that state. A task's Retry was accepted
(202), its run was dispatched, and the runner refused it at once with
`native_session_cleanup_quarantined: prior session cleanup remains
incomplete`
> - The user saw a Retry that failed instantly, and nothing said what to
do
> - This pull request lets the server read the runner's per-task cleanup
gate and hold the Retry with a clear reason. The Retry starts
automatically when the close is released
> - The benefit is that a Retry is never dispatched only to fail on a
block that is already known

## Linked Issues or Issue Description

**What happened?**
After two hard restarts, a Codex run's close stayed incomplete. The
board Retry for that task was accepted, and its run failed in about 1 s
with `native_session_cleanup_quarantined: prior session cleanup remains
incomplete`. The next Retry did the same.

**Steps to reproduce**
1. Let a native session close fail or stay pending for a task.
2. Press Retry on that task.

**Expected behavior**
The Retry waits with a clear reason, and starts when the cleanup
finishes. If the cleanup needs an operator, Retry is not offered and the
one working action is shown.

**Actual behavior**
The Retry is accepted and its run fails at once.

## What Changed

- `native-session-runtime.ts`:
- New `nativeSessionCleanupBlock({ companyId, issueId })`. It is a
read-only view of the in-process admission gate for one task: `pending`
(a retained close or a bounded automatic close recovery still owns the
task's provider resources), `operator_required`, or `null`. It grants no
authority.
- New `onNativeSessionCleanupSettled(listener)`. It is called whenever a
cleanup owner or quarantine entry is released.
- `explicit-native-continuation.ts` (the continuation gate for a Retry
or a new message):
- `pending`: the input is held with `local_cleanup` ("Retry is waiting
for the previous execution to finish cleanup. Your message is saved.").
It starts automatically when the close is released.
- `operator_required`: handled exactly like a recorded
`native_session_cleanup_quarantined` run. Retry is not offered. A new
message runs the existing stopped-process proof
(`verifyStoppedNativeSessionForContinuation`), which retires the runner
quarantine when the old processes are proven stopped.
- `native-cleanup-release-wake.ts` (registered in
`server/src/index.ts`): each cleanup release wakes deferred execution
for the company in a transaction, so a held Retry re-evaluates.
- `server/src/vendor/paperclip-runner/index.ts`: exports the two runtime
functions.

## Verification

- Red before the gate (server change stashed): `pnpm --filter
@paperclipai/server exec vitest run
src/services/quarantined-task-retry.test.ts -t "holds a Retry"`
dispatched a successor run while the task's close was retained
(`expected [ { … } ] to have a length of +0 but got 1`).
- Green after the gate:
- The Retry is held (`deferred_issue_execution`, `executionWait.reason =
local_cleanup`), and no successor is dispatched.
  - A different task is not blocked.
- When the close settles, the release is announced, and the next pass
dispatches exactly one successor.
- The whole `quarantined-task-retry.test.ts` file passes (28 tests).
`src/native-session-runtime.test.ts` passes. Server `tsc --noEmit`
passes after the runner package build.
- Live chaos replays: results are added in a comment.

## Risks

- The gate reads process memory, so it applies only where the server and
the runner session share a process (local runner). Other deployments
keep today's behavior.
- A held Retry re-evaluates on the release wake (sent in its own
transaction) or on the existing 30 s deferred-execution pass. When the
bounded automatic close budget is spent with nothing else scheduled, the
view reports `operator_required`. Retry is then no longer offered, and a
new message reaches the stopped-process recovery instead of waiting
forever.
- No schema or API shape changes.

## Model Used

- Claude Opus 5.5 (`claude-opus-5-5`), Anthropic, with tool use and code
execution in Claude Code.

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have searched GitHub for duplicate or related PRs and linked
them above
- [x] I have either (a) linked existing issues with `Fixes: #` / `Closes
#` / `Refs #` OR (b) described the issue in-PR following the relevant
issue template
- [x] I have not referenced internal/instance-local Paperclip issues or
links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip`
URLs)
- [x] My branch name describes the change (e.g. `docs/...`, `fix/...`)
and contains no internal Paperclip ticket id or instance-derived details
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [ ] All Paperclip CI gates are green
- [ ] Greptile is 5/5 with no open P2s, recommendations, or follow-ups
- [x] I will address all Greptile and reviewer comments before
requesting merge

Refs #19532.

🤖 Generated with [Claude Code](https://claude.com/claude-code)

---------

Co-authored-by: Claude Opus 5.5 <noreply@anthropic.com>
2026-11-06 18:52:46 -06:00
Nicky LeachandClaude Opus 5.5 fb3cf1a072 feat(ci): retry a failed Vitest case once in PR CI and report each retried pass (#19637)
## Thinking Path

> - Paperclip is the open source app people use to manage AI agents for
work
> - Contributors wait for PR CI before merge, so CI wall-clock time sets
the pace of work
> - PR CI runs Vitest shards with 4 workers on 4-vCPU runners, so
timing-sensitive tests sometimes time out under load
> - One such timeout fails the whole run, and a re-run costs another 15
minutes or more
> - In one 7-hour window on 2026-11-06, about 30 failed jobs were test
flakes on commits that passed on a later attempt
> - This pull request retries a failed Vitest case once in PR CI only,
and reports every pass that needed the retry
> - The benefit is fewer whole-run re-runs, while each flaky test stays
visible so that we can fix it

## Linked Issues or Issue Description

**What existing behavior does this improve?**

PR CI fails the whole run when one Vitest case fails once because of
runner load.

**Subsystem affected**

CI: the PR Vitest lanes (general, serialized, workspace and Runner
package lanes).

**Current behavior**

Vitest uses `retry: 0` everywhere. One timeout under load fails the run.
A person must notice it and re-run the failed jobs. About 20% of
recently merged PRs needed at least one re-run.

**Proposed behavior**

PR CI retries a failed Vitest case one time. A test that passes only on
the retry gets a GitHub warning annotation and a row in the job summary.
Local runs, release, cloud readiness and master keep `retry: 0`.

**Reason and benefit**

A re-run of one test case costs seconds. A re-run of the CI run costs 15
minutes or more. The report keeps flaky tests visible. Separate pull
requests fix the known flaky tests.

**Breaking changes**

None.

## What Changed

- Add `scripts/ci/vitest-retry.mjs`. It sets 1 retry when
`GITHUB_ACTIONS=true` and `GITHUB_WORKFLOW=PR`, and 0 in other contexts.
`PAPERCLIP_VITEST_RETRY` overrides the value.
- Add `scripts/ci/retry-reporter.mjs`. It writes a `::warning`
annotation and a step-summary table row for each test that passed only
on a retry.
- `scripts/run-vitest-stable.mjs` passes `--retry` to `vitest run`. The
`vitest list` collection step does not retry.
- The root `vitest.config.ts` and
`packages/paperclip-runner/vitest.config.ts` add the retry reporter
beside the existing reporters. The Runner config sets `retry` from the
same gate.
- `.github/workflows/pr-trusted.yml` reads the `CI_VITEST_RETRY`
repository variable. Set it to `0` to turn retries off without a code
change.
- Add `scripts/ci/retry-reporter.test.mjs` to `test:release-registry`,
and document the behavior in `doc/DEVELOPING.md`.

## Verification

- `node --test scripts/ci/retry-reporter.test.mjs`: 11/11 pass. The
tests cover the gate matrix, the reporter output, a real Vitest run with
a test that fails once, the wrapper arguments, and the Runner config.
- `node --test scripts/__tests__/run-vitest-stable-shard.test.mjs`:
39/39 pass.
- `node --test .github/scripts/tests/*.test.mjs`: 744/744 pass.
- Manual check: a temporary test that fails once ran through
`run-vitest-stable.mjs` and through the Runner package config. With the
PR environment it passed and wrote the annotation and the summary row.
With `GITHUB_WORKFLOW=Release` it failed. The temporary test is removed.

## Risks

- A retry can hide a flaky test. The annotation and the summary row
reduce this risk.
- A test that fails for a real reason now runs twice in PR CI, so a
failed run takes slightly longer.
- `pr.yml` loads `pr-trusted.yml` from master, so the `CI_VITEST_RETRY`
switch works only after merge. The retry itself is in the scripts and
starts with this pull request.
- Low risk otherwise: release and master verification are not changed.

## Model Used

- Claude Opus 5.5 (`claude-opus-5-5`) in Claude Code, with tool use and
code execution. A Claude sub-agent wrote the change, and the parent
session reviewed it.

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have searched GitHub for duplicate or related PRs and linked
them above
- [x] I have either (a) linked existing issues with `Fixes: #` / `Closes
#` / `Refs #` OR (b) described the issue in-PR following the relevant
issue template
- [x] I have not referenced internal/instance-local Paperclip issues or
links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip`
URLs)
- [x] My branch name describes the change (e.g. `docs/...`, `fix/...`)
and contains no internal Paperclip ticket id or instance-derived details
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [x] All Paperclip CI gates are green
- [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups
- [x] I will address all Greptile and reviewer comments before
requesting merge

🤖 Generated with [Claude Code](https://claude.com/claude-code)

Co-authored-by: Claude Opus 5.5 <noreply@anthropic.com>
2026-11-06 16:43:02 -08:00
DottaandPaperclip a0ac81e114 fix(ui): show task image results in compact thumbnail grids (#19626)
## Thinking Path

> - Paperclip is the open source app people use to manage AI agents for
work.
> - Task feeds show agent messages, documents, and files in time order.
> - Each image currently uses a full feed card.
> - A turn with seven screenshots makes the conversation hard to scan.
> - This pull request groups adjacent images from the same run in a
compact grid.
> - Users can scan the results and open each image in the existing
gallery.

## Linked Issues or Issue Description

**What existing behavior does this improve?**

Image results in task history and the live task feed.

**Current behavior**

Each image uses a separate full-width card. Native image upload receipt
messages can also separate related screenshots.

**Proposed behavior**

Adjacent images from one run share a wrapping thumbnail grid. New image
results join the grid. Documents, video, and authored messages keep
their positions. The grid opens the existing gallery.

**Reason and benefit**

Users can see a batch of screenshots without scrolling past one large
card for each file.

**Breaking changes**

The feed layout changes. The stored comments, files, APIs, and
permissions do not change.

Related public work: Refs #17228. Refs #8785. Refs #7667. These changes
supplied the artifact cards and media gallery that this pull request
reuses.

## What Changed

- Add one image grouping function for settled history, turn history, and
live results. Group only images with the same known run. Keep the first
row key and each image key when results arrive.
- Add a token-based grid that reuses the media artifact cards and image
gallery.
- Add an optional typed attachment-preparation marker to file
registration and chat-file reuse. Preserve the marker through comment
normalization. Use it with matching image, author, and run links to hide
generated receipts. Keep the exact historical sentence as a fallback for
old receipts.
- Add nine production component stories with seven sample-account
screenshots. Cover mobile, Classic, mixed results, single images,
missing images, streaming, gallery navigation, and the complete feed
projection.
- Add grouping and production-feed regressions. Add 18 browser cases
across light and dark themes.
- Improve contrast for the shared fallback label and gallery counter
after the accessibility checks found low contrast.
- Match alternate original-image paths when opening the gallery. Keep a
separate Open original link beside Download in the gallery.
- Record the feed layout in DESIGN.md.

## Verification

- Final qualification at `09b12381ce85bee6593050bd8a2fa18cbe2c45a6`:
[required CI
passed](https://github.com/paperclipai/paperclip/actions/runs/42317080212/job/128237094513),
including typecheck, build, all test lanes, E2E, and verify. The
snapshot has 58 successful check runs, three conditional skips, one
neutral advisory job, and a successful legacy Snyk status. No pending or
failed checks remain. Greptile and Paperclip Review both score this
exact head 5/5; all review threads are resolved.

- Current-head local checks: 544 focused UI tests passed across 11
files, with one existing skip. UI/shared typechecks and token gates
pass. All 18 focused Storybook browser cases passed after the CSS merge,
with retries disabled.
- Two database integration cases verify file registration and chat-file
reuse receipt markers. All 52 issue-validator tests and six upstream
default-model tests passed.
- Regressions failed before the fixes for unknown-run grouping, receipt
wording, and authored progress text with an image. The repair uses a
typed receipt marker and requires matching author, attachment, image,
and run links before hiding a generated receipt. All five review
findings are resolved.
- Browser checks cover loaded images, wrapping columns, overflow,
missing-image fallback, streaming stability, keyboard gallery
navigation, original-file links, and downloads. Fixtures use production
renderers. These checks do not prove deployed persistence or provider
behavior and do not compare visual baselines.
- Local limits: the preflight helper could not finish because Cargo was
absent. The earlier low-memory server typecheck and dependency-free
selector did not replace final-head CI. The now-passing final CI
supplies broad typecheck, build, server, Runner, and E2E coverage.
- Prior independent CI failures remain recorded: one Slack timer case
passed a single diagnosed rerun; its exact timer cause was not proved. A
later chat shard lost its self-hosted runner without a test assertion
failure. The current revision passes that shard and all applicable
gates. Master conflict resolution retained both image-grid and patch CSS
rules.

## Risks

- Images without a run ID remain separate. Messages and other resource
types end each batch.
- Receipt suppression requires a matching preparation marker or the
exact legacy sentence, plus matching attachment, image work product,
run, and author. Tests preserve human messages and native progress text
with attachments. The optional marker uses existing JSON metadata and
needs no database migration.
- Shared gallery and fallback text now have stronger contrast.

## Model Used

OpenAI GPT-6, through Codex. The agent used reasoning, repository tools,
code execution, and browser tests. The runtime did not expose a more
specific model ID or context window size.

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have searched GitHub for duplicate or related PRs and linked
them above
- [x] I have either (a) linked existing issues with `Fixes: #` / `Closes
#` / `Refs #` OR (b) described the issue in-PR following the relevant
issue template
- [x] I have not referenced internal/instance-local Paperclip issues or
links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip`
URLs)
- [x] My branch name describes the change (e.g. `docs/...`, `fix/...`)
and contains no internal Paperclip ticket id or instance-derived details
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [x] All Paperclip CI gates are green
- [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups
- [x] I will address all Greptile and reviewer comments before
requesting merge

---------

Co-authored-by: Paperclip <noreply@paperclip.ing>
2026-11-06 18:42:22 -06:00
DottaandClaude Opus 5.5 7c673e695f fix(chat): name tasks by identifier, not UUID, in tool rows and agent text (#19635)
## Thinking Path

> - Paperclip is the open source app people use to manage AI agents for
work
> - New users meet Paperclip through the onboarding chat with their
first agent, and through task briefs that agents write
> - A browser walk of onboarding found internal handles and
control-plane jargon in those user-facing surfaces
> - A tool row showed `Read taskId: e3ecf9bc-…`, an agent-written brief
cited `task … (id 2b330993-…)`, and a Codex agent told a new user about
"receipts", "execution policy", and a "rejected policy patch"
> - Raw UUIDs and mechanism narration make the product look broken and
give the user nothing to act on
> - This pull request makes tool rows name a task by its identifier, and
tells agents to reference identifiers and to describe outcomes, not
mechanics
> - The benefit is that a new user sees "Read <task identifier>" and
plain progress updates

## Linked Issues or Issue Description

**What happened?**
In the task chat, a collapsed tool row rendered the raw call argument
`taskId: <uuid>`. An agent-written task description included a raw task
UUID next to the task identifier. A Codex chief of staff narrated
internal mechanics (receipts, execution policies, a rejected policy
patch) to a new user in chat.

**Expected behavior**
Tool rows name the task by its identifier. Agent-written text links
tasks and documents by identifier. Agents tell the user what happened,
what it means, and the next step.

**Steps to reproduce**
1. Run onboarding with the Codex API runner and accept a single-task
proposal.
2. Watch the handoff in the chief-of-staff chat.
3. See the task lookup tool row and the narration. With the Claude API
runner and the plan path, open a child task created from the plan and
read its description.

## What Changed

- `ui/src/components/task-chat/transcript-adapter.ts`: a tool row's
target never contains a UUID argument. A `taskId`/`issueId` UUID is kept
as `taskRefId` on the tool item.
- New `ui/src/components/task-chat/task-reference.ts`:
`useTaskReferenceLabel` reads the task from the shared issue detail
query cache and returns its identifier. It returns "task" until the task
resolves or when it cannot.
- `TaskChatRunnerActivityGroup` and `TaskChatToolCard` show that
identifier as the row subject. They load the task only for rows that
have a task reference.
- `skills/paperclip/SKILL.md` (Comment Style): two new required rules.
"No raw IDs in prose" and "Describe outcomes, not mechanics".
- First-task onboarding skill: a "Talk in outcomes" rule. Non-inline
handoff inputs use an identifier link, not a raw UUID.
- Chief-of-staff persona (`AGENTS.md` for the first agent): the same
plain-language rule, so it applies in every chat.
- `skills/paperclip-converting-plans-to-tasks/SKILL.md`: task
descriptions reference other tasks and documents by identifier link,
never by raw UUID.
- No change to `skills-releases/` snapshots. They are frozen releases.

## Verification

Red on master (fix files reverted, new tests kept):

```
ui  tool-row-task-reference.test.tsx
 FAIL  ... > falls back to a plain word while the task cannot be resolved
AssertionError: expected 'ReadtaskId: e3ecf9bc-099a-4b10-8169-9…' not to contain 'e3ecf9bc-099a-4b10-8169-9ce490a91e3d'
      Tests  3 failed (3)
server  user-facing-wording-guidance.test.ts
      Tests  6 failed (6)
```

Green with the fix:

```
ui  tool-row-task-reference.test.tsx        Tests  3 passed (3)
server  user-facing-wording-guidance.test.ts Tests  6 passed (6)
```

Neighbouring suites:

- `cd ui && npx vitest run src/components/task-chat
src/components/TaskChatThread src/components/transcript`: 70 files, 1448
passed, 1 skipped.
- From the repo root: `onboarding-first-task-assets`,
`paperclip-skill-utils`, `onboarding-first-task-admission`,
`hiring-operational-examples`, `cli-invocation-safety`, and the new
guidance test all pass.
- `pnpm check:token-gates`: all gates clean. The change adds no styles.
- `ui` typecheck: no errors in the changed files.
- Not run locally: `agent-skills-routes.test.ts` hit a 30 s `beforeAll`
import timeout on a cold cache. CI covers it.

## Risks

- Low risk. A row that names a task loads that task once through the
shared issue detail cache. The thread usually has it cached already. A
failed load shows "task" and does not retry.
- Rows now show other non-UUID arguments after the identifier (for
example `<identifier> · status: done`). Rows without a task reference do
not change.
- The skill text changes the guidance that agents read. They do not
change permissions, tools, or API behavior.

> For core feature work, check [`ROADMAP.md`](ROADMAP.md) first and
discuss it in `#dev` before opening the PR. Feature PRs that overlap
with planned core work may need to be redirected — check the roadmap
first. See `CONTRIBUTING.md`.

## Model Used

- Claude Opus 5.5 (`claude-opus-5-5`), Anthropic, run in Claude Code
with tool use (shell, file edits, test execution).

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have searched GitHub for duplicate or related PRs and linked
them above
- [x] I have either (a) linked existing issues with `Fixes: #` / `Closes
#` / `Refs #` OR (b) described the issue in-PR following the relevant
issue template
- [x] I have not referenced internal/instance-local Paperclip issues or
links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip`
URLs)
- [x] My branch name describes the change (e.g. `docs/...`, `fix/...`)
and contains no internal Paperclip ticket id or instance-derived details
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [x] All Paperclip CI gates are green
- [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups
- [x] I will address all Greptile and reviewer comments before
requesting merge

🤖 Generated with [Claude Code](https://claude.com/claude-code)

---------

Co-authored-by: Claude Opus 5.5 <noreply@anthropic.com>
2026-11-06 18:12:48 -06:00
DottaandPaperclip 19c2bebc9c fix(runner): settle durable provider exits on open streams (#19657)
## Thinking Path

> - Paperclip manages AI agents and their work.
> - Runner keeps the native session and its event stream until a turn
ends.
> - A provider can exit with a terminal error while its event stream
stays open.
> - Waiting for that stream to close leaves the run and its resource
owner active.
> - The existing durable failure receipt already identifies the failed
current turn, including an authoritative replay.
> - This pull request uses that event to enter the existing failure and
cleanup path.
> - Recovery and later idle retirement can then proceed from a real
terminal result.

## Linked Issues or Issue Description

Refs #18988 for native resource retirement. This is a separate
terminal-event defect found during failed-turn recovery qualification. A
search of open and closed PRs found no duplicate `provider_exited` fix.
The related merged #12596 changes Rust test polling; it does not change
this TypeScript session owner.

**What happened?**

`executeNativeSession` records a nonrecoverable `provider_exited` event,
but can continue to wait on an open event iterator. A proposed result
does not authorize success, and stream EOF may never arrive. The run
cannot reach its existing failure and resource cleanup path.

**Expected behavior**

Settle the committed or authoritative duplicate terminal failure for
this exact run, session and provider. Close through the existing owner.
Preserve recoverable goals, completed-turn and identity guards. A
duplicate must not add another committed event count.

**Steps to reproduce**

1. Supply a native session whose iterator emits a current,
nonrecoverable, unexpected `provider_exited` failure.
2. Keep that iterator open until the session owner closes it.
3. Observe that the old implementation does not settle within the
existing test bound.
4. Apply the guard below. The same execution fails with the typed
terminal error and calls the existing close owner once.

**Paperclip version or commit**

The original regression was reproduced against master source
`05a19768ae4d337a4ae88ecdbc259f251406487c`. Current candidate
`f4bb8f1b68e2793062dd640ee56b87a9208b4fd9` normally merges fetched
master `07a548073ab48f13cb93b2fdc31553a5da88a070`. All unrelated master
paths are preserved exactly. The two-file PR diff contains only the
guarded settlement and its tests.

## What Changed

- Add a guard after the existing durable event receipt. It requires a
committed or duplicate receipt, a nonrecoverable unexpected exit, no
completed current or previous turn, and exact provider/run/session
identity.
- Throw the existing typed provider failure so the existing failure and
close owners run. Add no scheduler, polling loop, provider parser or
cleanup owner. Event counting remains committed-only.
- Cover open streams with and without a result proposal, authoritative
duplicate replay, all six safety predicates, and a recoverable goal that
later completes. Preserve accepted-result and close-once assertions.

## Verification

- The original open-stream regression fails before the production
change. Review then found that the duplicate test released EOF before
asserting settlement. The corrected duplicate control fails on the prior
production code at its original timely-settlement assertion; it passes
after accepting the authoritative duplicate. All 21 selected exit,
safety, goal and compaction controls pass.
- The normal durable transport validates authenticated current
run/session/turn/item identity and canonical replay equality before
delivery. The App port validates current authority and binding; its
durable event transaction returns duplicate only for matching source
identity and canonical payload. No absent or conflicting event
authorizes settlement. The six negative consumer tests use a
deliberately permissive mock port; they prove this consumer guard, not
that production accepts foreign events.
- The first remote Typecheck job found five errors in new mocks that
accessed PRP fields without narrowing a native-or-PRP event. Both mocks
now explicitly reject the wrong event shape. Complete original CI
evidence is retained. No cast, suppression or narrowed test compiler
program is used.
- On current integrated candidate `f4bb8f1`, normal Runner emission and
the full normal `tsconfig.test.json` source/test program pass. All 26
selected cases pass: the same 21 controls plus all five structured
provider-failure/model-retry rows affected by the incoming master
change. The other 197 cases were filtered, not counted as passing.
- Before master integration, all 411 declaration paths and bytes were
identical across the settlement change. Incoming master independently
adds one OpenCode declaration and changes three OpenCode declarations;
those deltas are recorded separately. This fix changes no runtime
declaration. No Rust source or binary is changed by this PR.
- Actual guarded workers recorded zero PG sockets, active listeners or
blocked attempts. All known worker processes/groups closed. The working
tree is clean after qualification. No install, Rust build, App run,
provider connection or PostgreSQL suite was part of the final freshness
loop.
- Fresh exact-head remote CI and complete bot reviews remain required. A
local whole-repository test/build, successful task retry or
live-provider acceptance is not claimed.

Run the selected controls from a normal dependency installation:

```sh
pnpm --filter @paperclipai/paperclip-runner exec vitest run src/native-session-runtime.test.ts --testNamePattern='settles committed or duplicate provider exits while their stream stays open|retains EOF settlement when provider exit fails the|preserves a recoverable provider-exit goal until its later authoritative completion|preserves a durable session failure when its stream closes|preserves session-goal failure priority|context compaction|never continues task work when a restart loses a compaction turn|preserves structured provider failure and model retry classification' --maxWorkers=1 --no-file-parallelism
```

## Risks

- A false terminal classification could stop useful work. The guard
requires the existing durable receipt and explicit current-turn failure
fields; recoverable and completed-turn controls remain covered. An exact
durable duplicate may settle the same failure without repeating
accounting.
- Close can still fail. This change reuses the existing close owner and
does not manufacture resource retirement or clear retained failure debt.
- This proves Runner failure settlement under a controlled session
boundary. It does not establish successful task retry, whole-tenant
quiet, live provider closure, or deployed suspension.

## Model Used

OpenAI `gpt-6.1-sol` produced the delegated fix and qualification.
OpenAI Codex, based on GPT-6, performed managing technical review and
integration. Both used repository tools and code execution. The
coordinator's exact backend snapshot and context-window size were not
exposed.

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have searched GitHub for duplicate or related PRs and linked
them above
- [x] I have either linked existing issues or described the issue in-PR
following the issue template
- [x] I have not referenced internal or instance-local Paperclip issues
or links
- [x] My branch name describes the change and contains no internal
Paperclip ticket id or instance-derived details
- [x] I have run the selected tests locally and they pass
- [x] I have added tests for the changed behavior
- [x] I have reviewed documentation; no command or public contract
changes require a documentation edit
- [x] I have considered and documented the risks above
- [ ] All Paperclip CI gates are green — fresh exact-head checks pending
- [ ] Greptile is 5/5 with no open findings — fresh exact-head review
pending
- [x] I will address all Greptile and reviewer comments before
requesting merge

---------

Co-authored-by: Paperclip <noreply@paperclip.ing>
2026-11-06 18:10:33 -06:00
DottaandClaude Opus 5.5 e33aa8a46a fix(runner): let saved Codex threads follow the current feature policy (#19659)
## Thinking Path

> - Paperclip is the open source app people use to manage AI agents for
work
> - The Paperclip runner keeps a saved Codex thread so the next run of a
task continues the same conversation
> - On each new run, the controller sends `run.attach` with the current
Codex launch arguments, and the runner refuses any change to "protected"
arguments
> - #19516 removed `--disable image_generation` from the Codex launch
arguments, but every thread saved before that deploy still records the
flag
> - The runner treated the feature toggle as protected, so every
pre-deploy Codex thread failed with `run.attach cannot change protected
launch arguments`
> - Same-run recovery then tried to replace the thread, the replacement
failed, and the tasks became blocked for an operator
> - This pull request treats Codex feature toggles as controller launch
policy, so a saved thread adopts the current toggles and restarts on the
same thread
> - The benefit is that a release that turns a Codex feature on or off
no longer strands every saved Codex thread

## Linked Issues or Issue Description

Refs #19516

**What happened?**
After a staging deploy that included #19516, Codex agent runs on tasks
with a saved thread failed at the start. The run log showed
`native_session_recovery_failed: PRP command run.attach failed:
run.attach cannot change protected launch arguments` (error code
`native_session_interrupted`). Same-run retries then failed with
`runner_continuity_break_archive_failed` and
`runner_remote_state_unavailable`, and the tasks were blocked with
"Workspace repair required". Four tasks on one Codex agent showed this
first failure. Each one last ran successfully before the deploy.

**Steps to reproduce**
1. Run a Codex task so that its thread is saved with the launch
arguments from before #19516 (`--disable image_generation`).
2. Deploy a revision that includes #19516.
3. Wake the same task again. `run.attach` sends the current arguments
without the toggle, and the runner rejects them.

**Expected behavior**
The saved thread continues under the current launch policy.

**Root cause**
`CodexCommandExecutor::stable_launch_args` drops only the per-run
filesystem and shell-environment entries before it compares saved and
current arguments. All other arguments, including Codex
`--enable`/`--disable` feature toggles, must be identical. The
controller computes the toggles from Paperclip policy for every launch,
so any change to that policy made every saved thread impossible to
attach.

## What Changed

- `provider_backend.rs`: `stable_launch_args` also skips `--enable
<feature>` and `--disable <feature>` pairs and the
`--enable=<feature>`/`--disable=<feature>` form. The function contract
comment now lists the rebindable arguments. `run.attach` then adopts the
controller's current toggles. Because the arguments changed, the
existing path stops the provider and restarts it on the same thread.
- New test
`saved_thread_adopts_the_controllers_current_codex_feature_policy`:
- A thread saved with `--disable image_generation` attaches with the
current arguments, keeps its thread ID, and records the new arguments.
  - A new `--disable` toggle (a tighter policy) is also adopted.
- A new `--enable` toggle is adopted in both flag forms, and the thread
ID stays the same.
- A sandbox bypass flag, a different `default_permissions` profile, and
a different subcommand are still rejected with "protected launch
arguments", and the saved state does not change.

## Verification

- Red on `master` (8621bcf53e) with only the new test added:
  ```
test
provider_backend::tests::saved_thread_adopts_the_controllers_current_codex_feature_policy
... FAILED
a saved thread must follow the current feature policy:
DurableRunnerError("run.attach cannot change protected launch
arguments", None, None)
  ```
- Integration regression
`tests/codex_provider.rs::saved_codex_thread_attaches_after_a_release_changes_its_feature_toggles`
drives the real durable executor with the fake Codex app-server. It
saves a thread with `--disable image_generation`, attaches with the
current arguments, runs a second turn, and checks that the provider
restarted once. A sandbox-bypass change is still rejected. Red on
unfixed source:
  ```
the saved thread adopts the current feature toggles:
DurableRunnerError("run.attach cannot change protected launch
arguments", None, None)
  ```
Green with the fix. The full `codex_provider` binary passes (116
passed).
- Green after the fix (unit test):
  ```
test
provider_backend::tests::saved_thread_adopts_the_controllers_current_codex_feature_policy
... ok
  ```
- `cargo test -p paperclip-runner-core --lib`: 560 passed, 0 failed.
- `cargo test -p paperclip-runner-core --no-fail-fast`: all Codex,
native-provider-backend, and durable-recovery integration binaries pass.
Some tests in `acpx_park_readiness` and `stdio_mcp` failed. Different
tests in these same binaries also fail on unmodified `master` on this
machine. They are timing tests under load and do not use this code.
- Not run: a live staging attach with a pre-#19516 thread. The runner
binary in a sandbox must match the controller's binary digest, so this
fix reaches sandboxes with the server deploy.

## Risks

- A saved thread now accepts any `--enable`/`--disable` toggle that the
controller sends. The controller is the only source of `run.attach`, and
a new thread gets the same toggles. A tightened policy now also applies
to saved threads, where before the saved thread was stranded.
- The sandbox, permission profile, approval, model, and subcommand
checks do not change.
- When the toggles change, the warm provider process restarts on the
same thread once. This is the existing path for changed runtime
arguments.

## Model Used

- Claude Opus 5.5 (`claude-opus-5-5`), Anthropic, used through Claude
Code with tool use (shell, file edit, browser reads of staging).

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have searched GitHub for duplicate or related PRs and linked
them above
- [x] I have either (a) linked existing issues with `Fixes: #` / `Closes
#` / `Refs #` OR (b) described the issue in-PR following the relevant
issue template
- [x] I have not referenced internal/instance-local Paperclip issues or
links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip`
URLs)
- [x] My branch name describes the change (e.g. `docs/...`, `fix/...`)
and contains no internal Paperclip ticket id or instance-derived details
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [x] All Paperclip CI gates are green
- [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups
- [x] I will address all Greptile and reviewer comments before
requesting merge

🤖 Generated with [Claude Code](https://claude.com/claude-code)

---------

Co-authored-by: Claude Opus 5.5 <noreply@anthropic.com>
2026-11-06 18:07:26 -06:00
DottaandClaude Opus 5.5 f4b19e4231 fix(runner): finalize a durable proposed result when restore loses its Codex turn (#19658)
## Thinking Path

> - Paperclip is the open source app people use to manage AI agents for
work
> - Native Codex runs survive control-plane restarts: runnerd restores
the provider conversation, and the control plane continues the task from
its checkpoint
> - A hard kill can land after the agent proposed its result
(`run.result.proposed`) but before the provider turn ended
> - The restored runner then proves that the turn ended with the
accepted result. It records `session.reconciled` and `run.terminal`, but
no provider turn terminal
> - The Codex recovery read did not see that turn as ended, so recovery
failed with "persisted active turn … is missing from thread/read".
Retries ran out, and the Retry re-ran finished work
> - This pull request lets recovery settle that turn with its durable
result
> - The benefit is that a task that already finished its work continues
to finalization after a restart, instead of failing and redoing the work

## Linked Issues or Issue Description

Refs #19525, #19591, #19539, #19501

**What happened?**
In a restart storm, a native Codex task (B1) proposed a complete
`paperclip.run_result.v1` with passing tests. The control plane accepted
the completion tool call. About 9 s later, a K1 (SIGKILL and restart of
the control plane) killed the controller, runnerd, and the Codex
app-server. After startup, `resume_dead_runner` resumed the same run two
times. Each resume spent about 25 s in `runner.session.startup` and
failed with `native_session_recovery_failed: HarnessReconciliationError:
persisted active turn <id> is missing from thread/read`. Then
`native_session_retry_exhausted`, replay was blocked
(`preserve_without_replay_v1`), and the run ended
`native_session_interrupted`. The task needed a Retry, which re-ran the
finished work.

**Steps to reproduce**
1. Start a native Codex task through runnerd.
2. Let the agent call `paperclip_finish`, and let Paperclip accept the
result.
3. Kill the controller, runnerd, and Codex before the provider turn
ends.
4. Let restart recovery resume the run.

Durable evidence from the kept instance:
- The run events have `run.result.proposed` for the turn, then a
`completion.tool_accepted` span, then the kill.
- The saved checkpoint has `activeTurnId` set to that turn and
`semanticResult: null`.
- The Codex rollout on disk does contain the turn. The provider did
persist it.
- The runnerd journal for the first resume has `session.reconciled
{previousProviderTurnId: <turn>, activeProviderTurnId: null}` and then
`run.terminal {turnTerminalState: completed, runTerminalState:
succeeded, reportedWorkDisposition: done}`. It has no `turn.*` event for
that turn. The runnerd Codex provider state shows
`completedTurnAuthoritative: true` and `completedProviderTurnId:
<turn>`.

**Expected behavior**
Recovery finalizes the accepted result. It does not re-run the task.

**Actual behavior**
The runnerd Codex transport builds the recovery `thread/read` reply from
runnerd's journal. It looked only for
`turn.completed|failed|interrupted|cancelled` events that name the turn.
Runnerd's "turn ended with an accepted result" branch
(`provider_backend.rs`, `recovered_turn_ended_with_result`) emits only
the reconciliation and the run terminal. So the reply omitted the turn,
and `CodexHarnessSession.reconcile()` threw at
`codex-harness-session.ts:796`. The second resume read the same journal
and failed the same way.

## What Changed

- `runnerd-codex-transport.ts`: a new `runnerdRecoveredTurnTerminal`
helper selects the terminal for a restored turn. A provider `turn.*`
terminal that names the turn wins, as before, with its cause. A
`run.terminal` that follows a `session.reconciled` that names the turn
as the ended previous turn (no active turn, no later `turn.started`) now
also settles that turn, with the run terminal's `turnTerminalState`. The
`thread/read` wait loop uses this helper.
- `codex-harness-session.ts`: `reconcile()` now settles a checkpointed
active turn that provider history no longer contains when the session
holds the semantic result that this exact turn proposed (`resultTurnId`
equals the turn). Recovery restores that result from the durable
`run.result.proposed` event. Without such a result, a missing turn still
fails closed.
- `codex-harness-session.ts`: the same rule applies when the restored
runner reports that turn `failed` with `provider_turn_lost_on_restore`.
This happens when the runner cannot prove the accepted result itself.
Later recoveries keep the settled outcome. Without a held result, a
restore-lost turn keeps its existing failure and same-conversation
continuation.
- `fake-codex-app-server`: a test-only `--hold-after-terminal-result`
flag keeps the turn open after an accepted completion report.
- `doc/execution-semantics.md`: one additive paragraph on this recovery
rule.

## Verification

- Red before the fix, real `paperclip-runnerd` and fake Codex: `pnpm
--filter @paperclipai/paperclip-runner exec vitest run
src/live/runnerd-restart-continuation.test.ts -t "durable proposed
result"` failed with `native_session_recovery_failed:
HarnessReconciliationError: persisted active turn provider-turn-1 is
missing from thread/read` at `native-session-runtime.ts:2267`. This is
the same stack as the incident.
- Green after the fix: the run finalizes on `provider-turn-1` with the
proposed result and `runTerminalState: succeeded`. It has no
`session.failed` or `turn.failed`, and Codex received only one
`turn/start` (no re-run). With the transport fix alone, the test passes
in about 5 s. With only the session fix, it also passes (about 30 s,
through the 5 s read wait).
- Driver red/green:
`src/drivers/codex/codex-app-server-driver.recovery.test.ts -t "missing
persisted turn"`. The settle case failed before the fix (`recovered:
false`) and passes after it. The guard case (the held result belongs to
another turn) still fails closed. The existing "fails recovery
explicitly when the persisted active turn is missing or replaced" test
still passes.
- Driver red/green for the restore-lost case: `-t "restore-lost turn"`.
The held=true case failed before the fix and passes after it. The
held=false case still maps `turn.failed` with the lost cause.
- Transport unit test: `runnerd-codex-transport.test.ts -t "reconciled
result terminal"` covers the run-terminal rule and its negative cases.
- Suites: `src/drivers/codex/`, `src/native-session-runtime.test.ts`,
`src/backends/`, `src/live/runnerd-restart-continuation.test.ts`, and
`src/live/runnerd-codex-transport.test.ts` pass. Some load-sensitive
tests time out at host load 25–30 and pass when rerun alone. The two
`proves local suspension after an event backlog … (1024 suffix deltas)`
cases also time out on unmodified master.
- `pnpm --filter @paperclipai/paperclip-runner typecheck:typescript`
passes.
- Live chaos replay with real Codex: K1 0–3 s after
`run.result.proposed`, 3/3 PASS (R1). Each case resumed the same run,
which ended `succeeded`. No Retry was needed and no work was re-run.
Details are in the comment below.

## Risks

- The transport rule accepts a run terminal only directly after
runnerd's own reconciliation that names the ended turn with no active
turn. Runnerd emits that pair only after it restored the conversation
and proved the turn ended. A provider turn terminal still wins. Other
run terminals do not settle a turn.
- The session rules use only a result that Paperclip already holds for
the exact turn. The control plane accepted that result before the kill.
A later provider terminal for that turn cannot change the outcome. The
finalizer can already interrupt a provider after an accepted result.
- A missing turn without a durable result still fails closed. Its
outcome is unknown, and the existing Retry stays available.
- No profile, schema, pack contract, or database changes. The Rust
change touches only the fake Codex test binary.

## Model Used

- Claude Opus 5.5 (`claude-opus-5-5`), Anthropic, with tool use and code
execution in Claude Code.

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have searched GitHub for duplicate or related PRs and linked
them above
- [x] I have either (a) linked existing issues with `Fixes: #` / `Closes
#` / `Refs #` OR (b) described the issue in-PR following the relevant
issue template
- [x] I have not referenced internal/instance-local Paperclip issues or
links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip`
URLs)
- [x] My branch name describes the change (e.g. `docs/...`, `fix/...`)
and contains no internal Paperclip ticket id or instance-derived details
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [ ] All Paperclip CI gates are green
- [ ] Greptile is 5/5 with no open P2s, recommendations, or follow-ups
- [x] I will address all Greptile and reviewer comments before
requesting merge

🤖 Generated with [Claude Code](https://claude.com/claude-code)

---------

Co-authored-by: Claude Opus 5.5 <noreply@anthropic.com>
2026-11-06 18:02:40 -06:00
Nicky LeachandClaude Opus 5.5 97953e9b59 fix(ci): repair the weekly test-weight refresh and extend it to e2e and Runner lanes (#19650)
## Thinking Path

> - Paperclip is the open source app people use to manage AI agents for
work
> - Contributors wait for PR CI before merge, so CI wall-clock time sets
the pace of work
> - CI test shards are balanced with per-file durations that a weekly
workflow refreshes
> - The weekly refresh has failed since 2026-11-02, and the e2e weights
have not been measured since 2026-09-15. Today e2e shards 3 and 6 take
7.0–7.7 minutes of tests, and shard 1 takes 4.3 minutes
> - A single file can also grow until it sets the time of its shard, and
nothing tells us about it
> - This pull request repairs the refresh, extends it to the e2e and
Runner package lanes, and warns about test files over 180 seconds
> - The benefit is balanced shards that stay balanced, and early notice
of oversized test files

## Linked Issues or Issue Description

**What existing behavior does this improve?**

The weekly refresh of the test-duration weights that balance CI shards.

**Subsystem affected**

CI: `scripts/ci/refresh-test-durations.mjs`,
`.github/workflows/ci-test-durations.yml`, and the Vitest and Playwright
CI reporters.

**Current behavior**

- The 2026-11-02 refresh (run 41408033686) failed. `gh api …/logs` now
refuses output that contains terminal escape sequences.
- Most successful `cloud-readiness.yml` master runs are admission-only
and have no server jobs. The script took the newest 2 runs, so it would
fail with "No server timing jobs found" on most weeks.
- The e2e weights (`scripts/e2e-shard-durations.json`) have no refresh
and are from 2026-09-15.
- No signal tells us when one test file becomes too slow.

**Proposed behavior**

The refresh runs again, selects master runs that ran the server jobs,
refreshes the e2e and Runner package-lane weights from merged PRs, and
lists oversized files. CI writes a warning for each test file over 180
seconds.

**Reason and benefit**

Unbalanced shards add minutes to every PR. The current e2e weights put
472 seconds on the slowest shard. The new weights put about 300 seconds
on each shard.

**Breaking changes**

None. Weights change only shard placement, never which tests run.

## What Changed

- Add `scripts/ci/gh-api.mjs`. It always passes
`--allow-escape-sequences`, retries without the flag when an older `gh`
does not know it, and strips ANSI codes from logs.
- `scripts/ci/refresh-test-durations.mjs`:
- scans up to 50 master runs and uses the 2 newest that ran the server
jobs;
- adds the `--dry-run`, `--pr-body=<path>` and
`--lanes=server,e2e,runner` options;
- validates every lane before it writes a file. If a merged-PR lane has
fewer than 2 valid runs, it keeps the current weights and writes a
warning.
- Add `scripts/ci/pr-run-durations.mjs`. It uses the final passing
`pr.yml` run of each merged PR, and it validates:
  - the PR is merged into `master`;
  - the merge commit is in the checkout;
  - the run's head SHA is the PR's final head SHA;
  - every shard of the run succeeded.

  It parses Playwright per-spec times and Runner per-file times.
- Add `scripts/ci/oversized-test-files.mjs` (Vitest) and
`scripts/ci/oversized-test-files-playwright.mjs` (Playwright). In GitHub
Actions they write a `::warning` for each test file over
`PAPERCLIP_CI_OVERSIZED_TEST_FILE_SECONDS` (default 180). They never
fail a job. The root and Runner Vitest configs and the e2e Playwright
config load them.
- `scripts/ci/test-timing-reporter.mjs`: move the per-file duration
calculation into an exported `moduleDurationMs()` helper. The behavior
does not change.
- `.github/workflows/ci-test-durations.yml` and
`.github/ci-duration-pr.md`:
  - the bot PR can also update the e2e and Runner manifests;
  - the PR body lists oversized files;
  - the verify step also runs the new tests and the e2e shard tests.
- Refresh `scripts/e2e-shard-durations.json`: 56 of 56 specs measured
(before: 30), from merged PRs #19613, #19191 and #19176. The file now
uses the shared schema with `sources` and `coverage`.

## Verification

- `node --test scripts/ci/test-selection-pr-timings.test.mjs
scripts/ci/test-selection-timings.test.mjs
scripts/__tests__/e2e-shard.test.mjs`: 32/32 pass. These include the e2e
shard balance check with the new weights.
- `node scripts/ci/refresh-test-durations.mjs --dry-run` against real
GitHub data, all lanes:

| Manifest | Measured | Sources |
| --- | --- | --- |
| `general-server-shard-durations.json` | 1488/1534 files | master runs
42296943853, 42294279748 |
| `serialized-shard-durations.json` | 167/167 files | the same two runs
|
| `e2e-shard-durations.json` | 56/56 specs | PR runs 42296374365,
42297700476, 42296994179 |
| Runner `vitest-lane-durations.json` | 310/311 files | the same three
PR runs |

- e2e placement over 8 shards, with the new medians as the real costs:
  - with the old weights, the slowest shard has 472 seconds;
  - with the new weights, every shard has about 300 seconds.
- The dry run lists 12 files over 180 seconds. The largest is
`server/src/services/workspace-recovery.test.ts`, at 636 seconds.
- In this PR, only the e2e weight file changes. The weekly run refreshes
the server weights. The Runner manifest is added by #19646.

## Risks

- The `--allow-escape-sequences` path ran only in unit tests. The local
`gh` did not support the flag, so the real dry run used the fallback.
The next weekly run is the first real test of the flag.
- The changes to the bot-PR shell steps did not run in Actions yet.
- The e2e weights come from 3 PR runs. Real shard times vary more than
the estimate.
- This PR and #19637 both edit the `reporters` lists in
`vitest.config.ts` and `packages/paperclip-runner/vitest.config.ts`. The
second PR to merge needs a small merge resolution.

## Model Used

- Claude Opus 5.5 (`claude-opus-5-5`) in Claude Code, with tool use and
code execution. A Claude sub-agent wrote the change, and the parent
session reviewed it.

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have searched GitHub for duplicate or related PRs and linked
them above
- [x] I have either (a) linked existing issues with `Fixes: #` / `Closes
#` / `Refs #` OR (b) described the issue in-PR following the relevant
issue template
- [x] I have not referenced internal/instance-local Paperclip issues or
links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip`
URLs)
- [x] My branch name describes the change (e.g. `docs/...`, `fix/...`)
and contains no internal Paperclip ticket id or instance-derived details
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [x] All Paperclip CI gates are green
- [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups
- [x] I will address all Greptile and reviewer comments before
requesting merge

🤖 Generated with [Claude Code](https://claude.com/claude-code)

---------

Co-authored-by: Claude Opus 5.5 <noreply@anthropic.com>
2026-11-06 15:50:02 -08:00
DottaandPaperclip 374a918d67 fix(runner): retain qualified OpenCode artifacts for cold recovery (#19622)
## Thinking Path

> - Paperclip is the open source app people use to manage AI agents for
work.
> - Native recovery must keep admitted provider state and useful
workspace files.
> - OpenCode binds its saved session to exact executable paths and
hashes.
> - A replacement image can remove those files even when session data is
saved.
> - Retaining a manifest alone cannot restore the missing launch files.
> - This pull request saves the qualified files before provider work and
restores the same owned paths.
> - The benefit is cold continuity without relaxing the Runner guard or
replaying a prior turn.

## Linked Issues or Issue Description

Refs #19558. That fix retains the selected pack for ordinary
continuation. This change adds durable file retention for a cold
allocation. Related #19487 adjusts the admission budget; it does not
retain launch files. A search of open and closed OpenCode cold/durable
artifact PRs found no duplicate.

**What happened?**

A saved OpenCode session could outlive the image that supplied its Node
executable, proxy, and native executable. A new image supplied different
bytes. The Runner then correctly refused the changed launch profile. The
saved harness did not contain the old files.

**Expected behavior**

Core must save qualified launch files before the first turn. It must
restore those exact files under the same owned account and absolute
paths. Unknown ownership, missing files, and changed hashes must still
stop recovery.

**Steps to reproduce**

Start an admitted remote OpenCode session. Save its workspace, encrypted
checkpoint, and harness data. Destroy the original allocation and
controller files. Restore into a new allocation with an image whose
qualified proxy has different bytes. Resume the same session. The new
opt-in local qualification command automates this path with actual
OpenCode and a local synthetic model.

## What Changed

- Store company-bound, encrypted launch objects and canonical run/backup
references. Generate migration 0438 through the normal database
workflow.
- Stage qualified Node, proxy, and native OpenCode files under a private
content-addressed OS-account home. Record the account UID and exact
launch paths. Preserve the Rust profile guard.
- Gate first provider work on durable capture under the current native
claim. Bound Stop/deadline waits while the actual late transfer keeps
its worker and scratch ownership until settlement. Restore cold caches
with verified staging and atomic rename. Keep live reattachment and
historical image-rooted sessions on their existing paths.
- Reuse bounded canonical expiration owners. Atomically fence old
checkpoint authority with a strict company/run-scoped retirement marker
before external deletion. Keep its indexed cleanup anchor across failed
deletes and restart. Preserve earlier resume handles and reject later
header or source-consumer writes. Add no idle scan or network call
inside a transaction.
- Add storage, race, executor, filesystem, and actual Rust resume
regressions. Add the opt-in local Linux qualification command and
operating limits in `doc/opencode-cold-recovery.md`.

## Verification

- RED before repair: real PostgreSQL/AES cold restore lacked the launch
files; normal executor preparation chose the new image pack. Separate
regressions exposed lost upload receipts, missing cache repair,
last-owner retirement, an account-UID mismatch, and a resume-handle race
during external deletion. Each expected failure was captured before its
repair.
- Local qualification before the final master integration: 1,169
executor tests, 233 storage/archive/admission/expiration tests, all
seven server typecheck layers, migration safety, and the actual Rust
cold-resume test passed.
- The maintained Linux command passed with two cached immutable
Paperclip images whose proxy hashes differ. It removed the original
account/controller trees, restored the production published cwd under a
new lease, resumed the same actual OpenCode session, kept a useful file
and prior model context, and made one new synthetic model request. No
external model call or network was available in either container.
- The object-store fixture uses real encrypted StorageService streams
with an independent owned local directory. It is not hosted S3
acceptance or a complete task HTTP/actor workflow. Historical tasks
still require normal effects reconciliation and recovery after
deployment.
- Review regressions reproduced partial-cache publication,
resume-versus-deletion, fresh-writer and source-consumer resurrection,
and unbounded Stop/deadline waits before each repair. They now pass
through real filesystem, encrypted storage, PostgreSQL, and SDK
boundaries. File validation is split from database ownership (384/831
source lines).
- Clean runtime head `aadab7acc69ff959678030db46ffe2dcfbefe28f`: the
maintained actual OpenCode cold qualification passed with `dirty:false`.
It preserved the provider session and recorded launch paths, restored
useful workspace content and prior model context, and made exactly one
resumed synthetic model request. The 314,560,000-byte launch capture
took 23.118 seconds; the later harness was 833,536 bytes. Subsequent
repairs change backup-reference retirement and governed continuity-cache
classification; capture, restore, launch, and published-workspace inputs
are unchanged, so that runtime receipt remains scoped to those paths.
The continuity-break consumer is verified separately.
- Retention repair `c14d386cecf7123257918ba6a8d47307df2da397`: 68/68
affected real PostgreSQL/AES storage tests and 15/15 focused executor
authority/admission cases pass. All seven server typecheck layers pass
(source layers and unchanged test shards, with the final 590-file test
layer repeated after fixture edits). All review threads have
evidence-backed resolutions. Its subsequent CI caught the separate
lifecycle-classification gap described below. The refreshed Paperclip
review reported paused work, not a completed new review.
- Final head `4d1cd3e3309e328b11abc85adc6d78c6d0c7f55d`: all 19 focused
root-entry/executor cases and all three source declaration layers pass.
[Greptile reviewed this exact head at
5/5](https://github.com/paperclipai/paperclip/pull/19622#issuecomment-6695984874).
Final-head [CI
verification](https://github.com/paperclipai/paperclip/actions/runs/42308908167/job/128214100339)
passes: 60 successful checks, five conditional skips, and the explicitly
neutral paused Paperclip review. No check is pending or failing.
- CI also caught the launch cache missing from the session-root
lifecycle contract. Both the writer scan and a real governed-replacement
consumer failed locally before repair: old launch bytes remained in the
active root. The cache now archives with the prior session state; the
consumer verifies exact bytes are preserved in the archive and absent
from the active root.
- The latest review found that backup retirement could delete an
independent run pin while a selected session retained the checkpoint. A
real PostgreSQL/AES regression failed before the repair. Backup-only
ownership now uses a NULL-safe exact backup predicate; the run pin
belongs to fenced checkpoint expiration. The regression verifies
checkpoint decryption and launch-file restoration after pending-backup
cleanup, followed by deletion only after removing the final resume
handle.
- An executor first-session case checks new-session durable capture
through the real capture helper and receipt propagation into the actual
harness manifest at the backup boundary. Real storage cases verify the
run-profile receipt and canonical backup/run pins.
- Sequential closure reuse and simultaneous first admission are
different scopes. A deterministic two-uploader test measures both
independent uploads, one verified ready winner, loser-only deletion, and
usable restoration for both runs. Each capture is bounded to 512 MiB and
five minutes; up to three pending receipts per run are retained. There
is no claim of global single-flight capture or a company-wide egress
bound.
- Earlier optional warm-ownership verification encountered missing local
binaries. After exact-source setup, all nine ownership assertions
passed; two other suites encountered local PostgreSQL setup/teardown
contention, so those interrupted attempts are not passes. Required
current-head CI supplies the broad final coverage. No deployment or
hosted historical recovery is claimed.

## Risks

- This adds two tables and a forward migration. The file object is
bounded to 512 MiB. Capture adds one initial transfer; later harness
archives exclude those large files. Company-scoped ready objects are
shared and retained until the last canonical owner retires. Concurrent
initial admissions can duplicate bounded transfers; each keeps
independent ownership and cancellation rather than waiting on another
controller. A continuity break retains the controller cache with its
prior state until normal session-root cleanup, adding up to one bounded
launch closure per retired state.
- Cold continuity requires the same qualified Linux platform, supported
runtime dependencies, owned account UID/home, and published absolute
cwd. A mismatch fails closed. No alias or Rust guard change is included.
- Existing image-rooted profiles have no retained file object. This
change cannot backfill missing historical binaries. A fresh governed
session must reconcile prior effects first.
- Live reattachment does not read artifact objects. Storage or
provenance failures before a new turn hold admission. They do not grant
new execution, model, tool, or replay authority.

## Model Used

OpenAI Codex, GPT-6 family, with reasoning, repository tools, code
execution, and local browser tools. The exact served model ID and
context window are not exposed in this session. No claim is made for
unavailable model metadata.

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have searched GitHub for duplicate or related PRs and linked
them above
- [x] I have either (a) linked existing issues with `Fixes: #` / `Closes
#` / `Refs #` OR (b) described the issue in-PR following the relevant
issue template
- [x] I have not referenced internal/instance-local Paperclip issues or
links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip`
URLs)
- [x] My branch name describes the change (e.g. `docs/...`, `fix/...`)
and contains no internal Paperclip ticket id or instance-derived details
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [x] All Paperclip CI gates are green
- [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups
- [x] I will address all Greptile and reviewer comments before
requesting merge

---------

Co-authored-by: Paperclip <noreply@paperclip.ing>
2026-11-06 17:30:00 -06:00
DottaandClaude Opus 5.5 fd58378ee6 fix(runner): never dispatch an OpenCode tool call its MCP client abandoned (#19546)
## Thinking Path

> - Paperclip is the open source app people use to manage AI agents for
work.
> - The Paperclip runner runs native OpenCode agents. OpenCode calls
Paperclip tools through an MCP bridge inside the OpenCode proxy. The
proxy sends each call to runnerd as an `item/tool/call` frame on stdout.
> - runnerd reads the proxy stdout only after the controller
acknowledges earlier events. A backlog of event frames can build in the
proxy. A tool call waits behind that backlog.
> - The OpenCode MCP client can time out while the call waits. The agent
then gets `MCP error -32001: Request timed out`. But the queued frame
still reaches runnerd later, and runnerd still runs the call.
> - This is a safety bug. A mutating call (for example, create a gateway
token) can succeed after the agent was told that it failed. The agent
can then repeat it.
> - This pull request makes sure that a call whose MCP client abandoned
it is never sent to runnerd while it is still queued in the proxy.
> - The benefit: "timed out" now means "did not run" for every call that
had not left the proxy.

## Linked Issues or Issue Description

**What happened?**
In chat-feature evals with native OpenCode, the agent got `MCP error
-32001: Request timed out` for a POST tool call. The server still ran
the POST and returned 201 about one second later. Other Paperclip tools
that took 0.03–0.5 s on the server reached OpenCode 10–22 s later. The
delay grew over the run, and then the calls failed with -32001.
Sometimes they failed at once.

**Expected behavior**
If the MCP client abandons a tool call before Paperclip dispatches it,
Paperclip must not run it.

**Steps to reproduce**
1. Run a native OpenCode agent (`paperclip_runner` adapter, runnerd
path) for a long chat turn with many tool calls.
2. Make the controller acknowledge runnerd events slowly, so a backlog
builds in the proxy.
3. Let the OpenCode MCP client time out on a mutating call that waits in
the backlog.
4. See that the agent gets -32001, but the call still runs on the
server.

**Where the per-call lag comes from (finding)**
- runnerd (`provider_backend.rs`, `poll_current_provider_with_control`)
does not read proxy stdout while any event is not acknowledged. It reads
at most 128 events per poll.
- Each poll that admits events, and each acknowledgement, calls
`persist_state`. That function writes the full provider state JSON again
(up to 16 MiB, and it grows during the run) and does two fsyncs. So each
round trip gets slower during the run.
- Pipe writes from Node are asynchronous on POSIX. OpenCode event frames
and `item/tool/call` requests therefore wait in one FIFO buffer in the
proxy. A tool call waits behind all earlier event frames, and the
results come back through the same gated path.
- OpenCode starts its MCP timeout when it calls the tool, not when
runnerd reads the frame. The -32001 event frame can itself wait in the
backlog, so it can look "instant" when it arrives.
- Evidence: the delay from runner emit to server receipt stays below 0.5
s. But runnerd's `item.completed` for a call comes 10–22 s before
OpenCode's `tool.execution.completed`, and the gap grows during the run.
- The fix for the lag is not small. It needs a change to runnerd
persistence: do not gate stdout reads on a full acknowledgement, or use
an append-only event log instead of a full state rewrite with two fsyncs
for each batch. This pull request does not change runnerd.

## What Changed

- `mcp-bridge.ts`: abort the call signal when the MCP client drops its
HTTP connection before a response. The `notifications/cancelled` path
already aborted it.
- `opencode-server-driver.ts`: send the bridge abort signal to
`dynamicToolHandler` (new optional `signal` field).
- `opencode-proxy-output.ts`: add `createBackpressuredFrameWriter`. It
gives the stream only what its buffer accepts and keeps the backlog in
its own queue. Frames keep their order. If a queued frame's signal
aborts, the writer removes the frame and calls `onAbandoned`.
- `opencode-app-server-proxy.ts`: write stdout through the new writer.
Tool-call requests carry the call signal. An abandoned request fails
with "abandoned by the MCP client before it was dispatched; it did not
run". Shutdown drains all live frames.
- Tests: a new regression test uses the real bridge and the writer with
a stalled stdout. It covers a cancel after timeout, a dropped
connection, and a live call. There are also unit tests for the writer.

## Verification

- `npx vitest run src/drivers/opencode src/cli/opencode` in
`packages/paperclip-runner`: 23 files, 226 tests pass.
- Red check: I removed the disconnect abort and the queue gating. Then 2
of the 3 tests in `opencode-proxy-abandoned-tool-call.test.ts` failed:
the abandoned `item/tool/call` reached stdout. After I restored the
code, they pass.
- `pnpm verify` exits 2 because the changed proxy files are outside its
resolved test graph. The required CI jobs supply broad coverage.
- `tsc --noEmit` for the runner package shows no errors in the changed
files. One error remains in `src/eval/workflow-harness.ts`. It comes
from a workspace package that is not built and is not related to this
change.

## Risks

- A call that already left the proxy (it is in the kernel pipe buffer or
in runnerd's reader) still runs after a client timeout. The window is
about 64 KiB of pipe buffer plus Node's 16 KiB high-water mark. To close
it fully, runnerd must get a deadline or a cancellation for each call.
That is a follow-up.
- Frames now wait in a proxy queue instead of the Node stream buffer.
Delivery order does not change. The new code drains this queue on
shutdown before the last stdout flush.
- When a client disconnects, a durable call is now cancelled. Before
this change it stayed pending. The client cannot get the result in
either case.
- No schema, contract, or ACPX profile changes.

## Model Used

- Anthropic Claude Opus 5.5 (`claude-opus-5-5`), used in Claude Code
with tool use (shell, file edit, test runs).

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have searched GitHub for duplicate or related PRs and linked
them above
- [x] I have either (a) linked existing issues with `Fixes: #` / `Closes
#` / `Refs #` OR (b) described the issue in-PR following the relevant
issue template
- [x] I have not referenced internal/instance-local Paperclip issues or
links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip`
URLs)
- [x] My branch name describes the change (e.g. `docs/...`, `fix/...`)
and contains no internal Paperclip ticket id or instance-derived details
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [ ] All Paperclip CI gates are green
- [ ] Greptile is 5/5 with no open P2s, recommendations, or follow-ups
- [x] I will address all Greptile and reviewer comments before
requesting merge

🤖 Generated with [Claude Code](https://claude.com/claude-code)

---------

Co-authored-by: Claude Opus 5.5 <noreply@anthropic.com>
2026-11-06 23:29:26 +00:00
Nicky LeachandClaude Opus 5.5 a2aa69bc62 perf(ci): split the Runner package Vitest lane into three duration-balanced lanes (#19646)
## Thinking Path

> - Paperclip is the open source app people use to manage AI agents for
work
> - Contributors wait for PR CI before merge, so CI wall-clock time sets
the pace of work
> - The Runner package Vitest lane is the PR CI critical path. It
finishes a median 15.3 minutes after the push
> - That lane runs all 311 package test files in one job with 2 workers:
1,381 seconds of serial work and 727 seconds of wall time
> - Ten files account for 61% of the time. Vitest's `--shard` splits by
file count, not by duration, so it cannot balance this work
> - This pull request splits the package files into three lanes balanced
by duration, and runs the native server group in its own lane
> - The benefit is about 232 seconds of tests per package lane instead
of 727 seconds

## Linked Issues or Issue Description

**What existing behavior does this improve?**

The time that PR CI needs to run the Runner package Vitest tests.

**Subsystem affected**

CI: the `Verify Paperclip Runner` Vitest lanes in `pr-trusted.yml`, and
`packages/paperclip-runner/scripts/run-pr-vitest-lane.mjs`.

**Current behavior**

The `vitest package` lane takes a median of 13.6 minutes. It is the last
job to finish in most PR runs. The lane keeps a 2-worker limit so that
Runner and sidecar processes can start within their deadlines. Average
CPU use is 29%.

**Proposed behavior**

Three package lanes each run about one third of the files, balanced by
measured duration. Each lane keeps the 2-worker limit. The native server
group runs in its own lane, as before.

**Reason and benefit**

The Runner lane stops being the critical path. More workers per lane
would add CPU contention and timeouts, so this change adds lanes
instead. The cost is about 3 runner-minutes per run for the extra setup.

**Breaking changes**

None. The `master` ruleset requires only `ci / verify` and `ci / e2e`,
so the new job names do not change required checks.

## What Changed

- Add `packages/paperclip-runner/scripts/vitest-package-lanes.mjs`.
- It gets the file inventory from `vitest list --filesOnly --json`, so
it follows `vitest.config.ts`.
- It partitions the files with the `partitionGeneralServerSuites`
function from `scripts/general-server-shard.mjs`.
- Add `packages/paperclip-runner/scripts/vitest-lane-durations.json`.
- It uses the same schema as
`scripts/general-server-shard-durations.json`.
- It is seeded from CI run 42290920882. It measures 310 of the 311
files.
- `run-pr-vitest-lane.mjs` accepts two new arguments:
  - `--package-lane=K/N` runs one partition.
  - `--native-server` runs only the native server group.
- The `--shard=1/2` and `--shard=2/2` arguments keep their exact
behavior for the matrix that master still sends.
- `.github/ci-task-matrix.json` and the fallback matrix in
`pr-trusted.yml` have three `vitest package (K/3)` lanes and the `vitest
native server` lane. The labels keep the `vitest` prefix because
`scripts/ci-profile/trace.mjs` matches `Verify Paperclip Runner
(vitest`.
- Tests:
- the lanes cover the inventory exactly once, checked with real `vitest
list`;
  - the old `--shard` commands plan the same commands as before;
  - the manifest schema is correct;
  - bad lane arguments are refused.
- Update the Runner Vitest lane paragraph in `doc/DEVELOPING.md`.

## Verification

- `node --test scripts/__tests__/run-vitest-stable-shard.test.mjs`:
44/44 pass.
- `node --test scripts/__tests__/runner-release-crate-cache.test.mjs
.github/scripts/tests/ci-plan.test.mjs`, together with the file above:
71/71 pass.
- Related workflow, cache, routing and profile tests: 446/446, 153/153
and 14/14 pass.
- Local end-to-end run of `GITHUB_WORKFLOW=PR node
scripts/run-pr-vitest-lane.mjs --package-lane=3/3` on macOS:
- the prep steps ran, and the lane ran 104 of 311 files in 123 seconds;
- 2 tests failed: a macOS `kill EPERM` and a 5-second timeout under full
local load without the CI worker limit;
  - both files pass when run alone (35/35 tests).
- This PR's own CI runs the matrix from master, so it uses the old
`--shard` commands. The new lanes run in CI only after merge. Reviewers
can compare the job durations of the first PR runs after the merge.

| Lane | Files | Serial estimate | Wall estimate with 2 workers |
| --- | --- | --- | --- |
| 1/3 | 103 | 464.9 s | ~232 s |
| 2/3 | 104 | 465.0 s | ~232 s |
| 3/3 | 104 | 465.0 s | ~232 s |

## Risks

- The weights come from one CI log and do not include collection or
setup time. The balance can be uneven until a refresh measures real lane
runs.
- Each lane passes its file paths to Vitest as filters, and Vitest
matches a filter as a substring of the path. A path that is a substring
of another path would run a file in two lanes. No current path does
this. If one does, the script prints a warning, and no file is dropped.
- Each package lane runs `ensure:eval-build-deps` and `build:rust`
again, which adds about 3 runner-minutes per run.
- A comment in `scripts/run-vitest-stable.mjs` (about line 110) still
says that the last Runner shard runs the native group. A follow-up will
correct it.

## Model Used

- Claude Opus 5.5 (`claude-opus-5-5`) in Claude Code, with tool use and
code execution. A Claude sub-agent wrote the change, and the parent
session reviewed it and ran the local lane check.

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have searched GitHub for duplicate or related PRs and linked
them above
- [x] I have either (a) linked existing issues with `Fixes: #` / `Closes
#` / `Refs #` OR (b) described the issue in-PR following the relevant
issue template
- [x] I have not referenced internal/instance-local Paperclip issues or
links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip`
URLs)
- [x] My branch name describes the change (e.g. `docs/...`, `fix/...`)
and contains no internal Paperclip ticket id or instance-derived details
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [x] All Paperclip CI gates are green
- [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups
- [x] I will address all Greptile and reviewer comments before
requesting merge

🤖 Generated with [Claude Code](https://claude.com/claude-code)

---------

Co-authored-by: Claude Opus 5.5 <noreply@anthropic.com>
2026-11-06 15:12:05 -08:00
DottaandPaperclip 2e340d6235 fix(ui): show unread message counts in agent chat pickers (#19627)
## Thinking Path

> - Paperclip helps people manage AI agents and their work.
> - People switch between agent chats to read replies.
> - The agent picker does not show how many messages are unread.
> - People need that count before they select a chat.
> - The chat list already has the viewer's read state.
> - This pull request adds numeric badges from that shared list.
> - People can find unread replies without extra requests for each
agent.

## Linked Issues or Issue Description

**What existing behavior does this improve?**

The chat header agent picker and the secondary sidebar's Add chat
picker.

**Subsystem affected**

Agent Chat UI, shared task types, and the chat read-state service.

**Current behavior**

The pickers do not show the unread message count for each agent.

**Proposed behavior**

Show the unread count beside each agent. For example, show 3 for three
unread agent messages. Hide the badge when the count is zero. Keep
switching available while chat data loads.

**Reason and benefit**

People can see which chats need attention before they switch. The count
uses the existing shared request and cache.

**Breaking changes**

The chat response gains an optional `unreadMessageCount` field. Existing
fields and read receipts keep their behavior. There is no database
migration.

**Additional context**

Related: #19425 changes chat structure. This change adds counts to the
current agent pickers. The duplicate search found no PR for these count
badges.

## What Changed

- Count unread agent comments in the existing grouped read-state query.
Keep company and viewer scope.
- Exclude human messages, deleted comments, system notices, and
fast-response receipts.
- Pass memoized count maps to both agent pickers. Use a direct lookup
for each row.
- Show numeric badges and accessible singular or plural labels.
- Test count changes, account isolation, cached opens, search, and large
agent lists.
- Update the chat stories, fixture data, and development guide.
- Make the Slack owner retry-deadline test deterministic after
reproducing its CI failure.

## Verification

- On current head `05f5fa6201`, the [main CI
workflow](https://github.com/paperclipai/paperclip/actions/runs/42305845930)
passed, including build, typecheck, all applicable test shards, browser
shards, and final verification. The prior server shard 2, 6, and 7
failures do not recur.
- [Greptile's current-head
review](https://github.com/paperclipai/paperclip/pull/19627#issuecomment-6696161631)
is 5/5, its check succeeded, and both previous review threads are
resolved. Current head check inventory is complete: 55 successful
checks, three intentional skips, and no pending or failed checks. The
Paperclip application review summary reports paused; no new completed
Paperclip review is claimed. Its existing findings are resolved, and the
independent current-head Greptile review is 5/5.

- Current head `05f5fa6201` merges master `8621bcf53e` to resolve an
import conflict. Master now includes the same model-default test repair.
This branch keeps its upstream import, so that file no longer differs
from master.
- After this merge: all 21 server tests in the Slack owner and
model-default suites pass, all 22 tests in the three picker/sidebar
suites pass, and token gates pass. The standard preflight still cannot
build Rust because `cargo` is absent. Fresh CI must supply the broad
checks.

- Head `7d125fb8c7` replaces the Slack owner test's real timer wait with
the worker's existing clock input. It checks that the intent stays
pending one millisecond before the retry deadline and clears at the
deadline. All 15 Slack owner integration tests pass locally. Runtime
retry behavior is unchanged.
- On `4cfb1e9d55`, both review checks gave 5/5. CI [server shard
2](https://github.com/paperclipai/paperclip/actions/runs/42302458830/job/128183671349)
failed the Slack credential-lease retry test. The same assertion failed
in an unchanged local run. A diagnostic run with added logging passed;
the exact timer deviation was not captured. The new test removes the
real-time wait assumption and checks the clock boundary directly. The
earlier model-default and cleanup failures did not recur in that CI run.

- On `a3378dfc40`, both Greptile and Paperclip Review gave 5/5 with no
open findings. Typecheck, build, all eight browser shards, and most test
shards passed.
- That CI attempt failed two server shards. The model-default test still
expected `gpt-5.6-sol`, while the current default is `gpt-6.1-sol`. I
reproduced both failures locally. Commit `4cfb1e9d55` uses the exported
default-model constant; all six tests in that suite now pass. Production
model selection does not change.
- The retained-cleanup backlog test exceeded its 15-second limit in
[server shard
6](https://github.com/paperclipai/paperclip/actions/runs/42299858777/job/128175193320).
The unchanged test passes locally with the same limit. Its CI timeout
cause is not established. No assertion or timeout was changed. The fresh
CI run must recheck it.

- Review repair: commit `0db631b215` keeps the existing-chat and
unread-agent arrays stable when chat data and the active agent do not
change. A new 500-agent test fails before the repair and passes after
it. The test also checks count refreshes.
- The first CI typecheck failed on duplicate `IMAGE_ONLY` and
`TESTOPS_REQUESTED` keys in `tests/runner-e2e/workflow-target.test.ts`.
This was present in upstream code. Master commit `e482f0f632` removes
the duplicate keys. This branch now includes that commit. All nine
workflow-target tests pass locally.
- After the latest master merge: all 22 tests in the three affected
picker/sidebar suites pass. Before that merge, all 38 focused UI tests
passed.
- The current head is `05f5fa620134ad199a3d85b66fb2eb93d3bb6077`. All
current status checks are complete, the aggregate verify gate succeeds,
mergeability is CLEAN, and no unresolved review threads remain. The
maintainer has instructed normal merge after checks pass.

- After merging current master: 37 focused UI tests pass across
AgentChatPicker, CoordinatorAgentSwitcher, AgentConversationsSidebar,
useAgentChatRead, and SidebarAgentChats.
- After merging current master: all 38 proactive-chat integration tests
pass with a real disposable PostgreSQL database. They check counts of 2,
1, and 0 at exact read cutoffs.
- The prior revision passed UI typecheck and build, shared build,
isolated low-memory server typecheck, token gates, and 30 map/catalog
tests.
- The 500-agent test bounds index work and count lookups. Search does
not rebuild the existing-chat index.
- Browser checks used production components with simulated API data.
Dark, light, mobile, and Add chat cases passed. Counts of 3 and 12
stayed visible through search. Read agents had no badge. Cached opens
made no chat API requests.
- Twenty local cached opens took 34.5–57.6 ms, with a 38.4 ms median.
This is an unthrottled fixture measurement.
- Earlier full local checks could not complete because Rust cargo is
absent and the workspace has limited memory. The standard worktree
preflight also stops at missing cargo. Required CI must supply broad
checks for this PR head.
- The first server typecheck ran out of memory while Storybook was
active. Its isolated low-memory retry passed. No visual baseline
comparison or live provider delivery is claimed.

## Risks

- Low risk. The count replaces a boolean aggregate in the same grouped
query. Very long chat histories still need that existing scan.
- A count can be stale until the existing chat-list cache refreshes.
Read receipts still control the unread cutoff.
- The change adds no polling, per-agent history request, database
migration, or permission change.

## Model Used

OpenAI GPT-6 through Codex, with code editing, terminal tools, and
browser verification. The runtime did not expose a more specific served
model ID or context-window size.

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have searched GitHub for duplicate or related PRs and linked
them above
- [x] I have either (a) linked existing issues with `Fixes: #` / `Closes
#` / `Refs #` OR (b) described the issue in-PR following the relevant
issue template
- [x] I have not referenced internal/instance-local Paperclip issues or
links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip`
URLs)
- [x] My branch name describes the change (e.g. `docs/...`, `fix/...`)
and contains no internal Paperclip ticket id or instance-derived details
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [x] All Paperclip CI gates are green
- [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups
- [x] I will address all Greptile and reviewer comments before
requesting merge

---------

Co-authored-by: Paperclip <noreply@paperclip.ing>
2026-11-06 17:10:56 -06:00
DottaandClaude Opus 5.5 7941f6b051 fix(runner): show OpenRouter's invalid model ID as a model rejection (#19548)
## Thinking Path

> - Paperclip is the open source app people use to manage AI agents for
work
> - Native runs use the Paperclip runner with drivers such as OpenCode
> - When a provider rejects the selected model, the product shows "Model
unavailable" and offers a model choice
> - OpenCode reports provider HTTP errors as `APIError` with the message
under `data`, not at the top level
> - The runner then reported "Provider turn failed", so an invalid model
ended as a generic adapter failure
> - This pull request classifies OpenRouter's invalid model ID with a
closed provider-failure category, and makes the server keep that
classification
> - The benefit is that a person sees "Model unavailable" and the real
provider message, and can choose another model

## Linked Issues or Issue Description

**What happened?**
A chat evaluation selected a model ID that OpenRouter does not know.
OpenCode reported `turn.failed` with `error: { name: "APIError", data: {
message: "<model> is not a valid model ID", statusCode: 400,
isRetryable: false } }`. The run was saved with `errorCode:
adapter_failed`. The task chat showed "The OpenCode run failed before it
completed." and no "Model unavailable" marker. The provider notice said
only "OpenCode session failed.".

**Expected behavior**
A non-retryable rejection of the selected model is saved as
`native_provider_model_rejected`, so the product shows "Model
unavailable" and the model choice. The notice shows the provider's
message.

**Steps to reproduce**
1. Configure an OpenCode agent with an OpenRouter model ID that does not
exist.
2. Send the agent a message.
3. Before this change, the run fails as `adapter_failed` and the notice
says "OpenCode session failed.".

## What Changed

- `drivers/opencode/provider-failure.ts`: a non-retryable OpenCode
provider error whose message says the model is not valid (`not a valid
model`, `model_not_found`, model not found or not supported) gets the
closed category `model_unavailable`. A provider that allows a retry
keeps the existing category.
- `native-session-runtime.ts`: a non-recoverable failure with
`model_unavailable` is a model rejection. The runtime reads the closed
category, not provider text.
- `native-session-executor.ts`: a non-recoverable
`NativeProviderTerminalFailure` that the runner marked as a model
rejection is saved as `native_provider_model_rejected`. Before, every
such terminal was saved as `native_provider_terminal_failed` before the
marker was read.
- `drivers/opencode/opencode-server-driver.ts`: the provider notice
summary shows the provider message from `data` when there is no
top-level message. Provider text is not used as the turn failure
message, so it does not reach `run.error` or Sentry.
- Tests: provider-failure mapping (retryable and non-retryable), runtime
classification by category, driver notice summary with no failure
message, and an executor test for the saved code and terminal
disposition.

## Verification

- `npx vitest run src/native-session-runtime.test.ts
src/drivers/provider-failure.test.ts src/drivers/opencode` in
`packages/paperclip-runner`: 16 files, 412 tests passed.
- `npx vitest run
src/services/native-runtime/native-session-executor.test.ts` in
`server`: 1,152 tests passed.
- Negative controls: reverting the provider-failure mapping, the runtime
check, or the executor branch each makes its new test fail.

## Risks

- Low risk. Classification uses a closed category and a runner-set
marker, not provider text.
- The model check on the provider message is text-based inside the
OpenCode mapper. A provider that uses "not a valid model" for another
reason with a non-retryable error will show "Model unavailable".
- Provider text appears in the notice summary, as provider notices
already did for top-level messages.

> For core feature work, check [`ROADMAP.md`](ROADMAP.md) first and
discuss it in `#dev` before opening the PR. Feature PRs that overlap
with planned core work may need to be redirected — check the roadmap
first. See `CONTRIBUTING.md`.

## Model Used

- Claude Opus 5.5 (`claude-opus-5-5`), Anthropic, with tool use and code
execution in Claude Code.

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have searched GitHub for duplicate or related PRs and linked
them above
- [x] I have either (a) linked existing issues with `Fixes: #` / `Closes
#` / `Refs #` OR (b) described the issue in-PR following the relevant
issue template
- [x] I have not referenced internal/instance-local Paperclip issues or
links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip`
URLs)
- [x] My branch name describes the change (e.g. `docs/...`, `fix/...`)
and contains no internal Paperclip ticket id or instance-derived details
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [ ] All Paperclip CI gates are green
- [ ] Greptile is 5/5 with no open P2s, recommendations, or follow-ups
- [x] I will address all Greptile and reviewer comments before
requesting merge

🤖 Generated with [Claude Code](https://claude.com/claude-code)

---------

Co-authored-by: Claude Opus 5.5 <noreply@anthropic.com>
2026-11-06 17:08:04 -06:00
DottaandClaude Opus 5.5 02a2299173 feat(codex): default Codex to gpt-6.1-sol, half the gpt-5.6-sol price (#19623)
## Thinking Path

> - Paperclip is the open source app people use to manage AI agents for
work
> - Codex agents run through Paperclip Runner or the legacy
`codex_local` harness, and the runner E2E suites run paid Codex cells
> - The shared Codex default and many selections preferred `gpt-5.6-sol`
> - The reviewed OpenAI rate card in
`server/src/services/codex-pricing.ts` (`openai-standard-2026-09-30`)
prices `gpt-6.1-sol` at $2 input / $0.10 cached / $10 output per 1M
tokens, and `gpt-5.6-sol` at $4 / $0.40 / $20
> - So every default run and every paid Codex eval cell cost twice as
much as necessary
> - This pull request moves every place that prefers or selects
`gpt-5.6-sol` to `gpt-6.1-sol`, and keeps historical facts, rate cards
and compatibility fallbacks on `gpt-5.6-sol`
> - The benefit is half the token price for new default Codex agents and
for the Codex E2E and TestOps cells

## Linked Issues or Issue Description

**What existing behavior does this improve?**
The default Codex model for new agents and the Codex model that the
runner E2E suites and TestOps plans select.

**Subsystem affected**
Adapters (`adapter-utils`, `codex-local`), server native runtime
fallback, UI AI connection pools, Paperclip Runner devtools and live
evals, runner E2E catalog and TestOps mappings.

**Current behavior**
New Codex agents without an explicit model store `gpt-5.6-sol`. The
runner E2E `runner-codex` profile, the Reliability `queue-steer` plan
cell, the Product regression TestOps mapping and the ACPX Codex
qualification selection all use `gpt-5.6-sol`.

**Proposed behavior**
They use `gpt-6.1-sol`. Existing agents that store a model keep it.
`gpt-5.6-sol` stays selectable.

**Reason and benefit**
`gpt-6.1-sol` costs half as much per token on the in-repo reviewed rate
card. The current OpenAI pricing page (retrieved 2026-11-06) shows the
same short-context rates and also lists long-context rates of $4 / $0.20
/ $15 for `gpt-6.1-sol` against $8 / $0.80 / $30 for `gpt-5.6-sol`.

**Breaking changes**
None for stored configurations. See Risks.

## What Changed

Changed defaults and selections (all now `gpt-6.1-sol`):

- `PAPERCLIP_RUNNER_DEFAULT_MODELS.codex` in
`packages/adapter-utils/src/paperclip-runner-permissions.ts`. This also
changes `DEFAULT_CODEX_LOCAL_MODEL`,
`resolvePaperclipRunnerModel("codex", …)`, runner config normalization,
`codex_local` → Paperclip Runner conversion, the UI new-agent and
agent-config defaults, the composer default model and the public MCP
effort lookup.
- `codex-local` `models`: the 5.6 entry is now the literal
`gpt-5.6-sol`, because it used to be `DEFAULT_CODEX_LOCAL_MODEL`. The
list order and contents do not change.
- AI connection pool: a new OpenAI member profile uses
`PAPERCLIP_RUNNER_DEFAULT_MODELS.codex` instead of a hard-coded
`gpt-5.6-sol`.
- Paperclip Runner devtools ACPX Codex default and preset, the
`runner-codex-sol` local provider smoke, and the `acpx-codex-sol` live
workflow candidate.
- `tests/acpx-qualification-models.ts` Codex selection (runner E2E and
runner acceptance ACPX Codex profiles).
- Runner E2E: the `runner-codex` profile follows the default, so all
native Codex cells move. This includes the `runner-codex` cells among
the 52 standard `everyday-workflows` cells and the seven Codex
reliability cells. `runner-codex-mini` stays on `gpt-5.4-mini`. The
Reliability plan `queue-steer` `steeringProfile` is now
`['runner-codex', 'gpt-6.1-sol']`. Its executionId
(`everyday-workflows.runner-codex.daytona.queue-steer`), its fullName
and its TestOps case identity do not change. No separate profile is
necessary.
- `product-regression-testops.mjs`: the declared model for every
`runner-codex` case is now `gpt-6.1-sol` (it was already that for
`configured-repository`).
- `tests/runner-e2e/installed-cli.ts`: the credential-free installed
startup proof opens a session on the default model.
- `tests/runner-e2e/scheduled-prices.json`: add a `gpt-6.1-sol` price
(`openai-standard-2026-11-06`, including 30m/12h cache writes and
long-context rates from the OpenAI pricing page). The weekly scheduled
Codex cells need an exact price for their model, or admission fails
closed.
- Storybook: the composer model picker fixtures, the connection pool
stories and host, and the agent settings preview show `gpt-6.1-sol` as
the default.
- Docs: `doc/DEVELOPING.md` (the Codex conversion default) and
`tests/runner-e2e/EVERYDAY-WORKFLOWS.md` (local matrix, reliability
extras, `queue-steer` row).
- Tests that assert the default now expect `gpt-6.1-sol`. New
assertions: the default has the `0.159.0` CLI floor, the compatibility
fallback is floor-free, the `queue-steer` plan cell runs `runner-codex`
on `gpt-6.1-sol`, and all native Codex everyday cells (standard and
reliability) use `gpt-6.1-sol`.

Deliberately kept on `gpt-5.6-sol`:

- Rate cards: `server/src/services/codex-pricing.ts` and
`packages/paperclip-runner/src/evals/model-pricing.ts`. Old receipts
need them. (The runner eval rate card has no `gpt-6.1-sol` entry. An
unpriced candidate is reported as unpriced, not as zero. I did not add a
rate there because that card has its own version and source.)
- The remote Codex CLI compatibility fallback. A new
`CODEX_LOCAL_COMPATIBILITY_FALLBACK_MODEL = "gpt-5.6-sol"` replaces the
default in `codexModelFallbackCandidates`. `gpt-6.1-sol` needs Codex
0.159.0 or newer, so it cannot be the floor-free last resort. Fallback
behavior is unchanged.
- `tests/runner-e2e/provider-usage.ts`: the implicit request
cache-policy attribution stays qualified only for `gpt-5.6-sol`. I did
not verify that policy for `gpt-6.1-sol`. A `gpt-6.1-sol` response that
omits the write-TTL split keeps its cache-write cost unknown, which is
the existing behavior for unqualified models.
- `tests/runner-e2e/scheduled-measurements.json`: historical
`gpt-5.6-sol` measurements. They no longer match the current suite
definitions, so the forecast reports them as historical only. The
forecast tests now build their synthetic cohorts on the current
definition hash.
- Model catalogs that list `gpt-5.6-sol` as available (`codex-local`,
`cursor-local`, `opencode-local`, Speko voice diagnostics, Pi picker
fixture).
- The `gpt-5.6` → `gpt-5.6-sol` alias for old stored configs.
- Dated or evidence docs: `doc/plans/*`, `doc/adapter-model-audit-*`,
`QUALIFICATION-*`, `doc/connections/MEMORY.md`,
`doc/connections/TASK-REVIEWS-VERIFICATION.md`,
`tests/runner-e2e/CHAT-FEATURES.md`, the Slack eval evidence, and the
S49 soak signature text (the soak failure happened on `gpt-5.6-sol`).
- Test fixtures that parse, price, migrate or round-trip an existing
`gpt-5.6-sol` value (Rust runner tests, driver tests, pricing tests,
stored-config tests, stories that show an existing agent).

## Verification

- `npx vitest run` on every server, UI, adapter-utils and codex-local
test file that mentions `gpt-5.6-sol` or the default, plus all of
`packages/adapter-utils` and `packages/adapters/codex-local`: 5,483
passed. Three timeouts under load (`sandbox-managed-runtime`,
`acp.quota`) passed when rerun.
- `packages/paperclip-runner`: `vitest run` for `src/eval`, `src/evals`,
`src/drivers/acpx`, `src/drivers/codex`, `src/cli`, `src/contracts`,
`src/backends`: 2,641 passed.
- `node --test tests/runner-e2e/reliability-testops.test.mjs
tests/runner-e2e/product-regression-testops.test.mjs`: 28 passed.
- `node tests/runner-e2e/run-unit.mjs`: all model, catalog, reliability,
scheduled and TestOps tests pass. Failures remain only in
`copilot-protection-flow`, `denied-target-isolation-flow`,
`pi-controls-flow`, `workflow-target` and `unit-launcher`. These five
also fail on unmodified master in this local environment (filesystem
watch and git environment), and they do not touch models.
- `vitest run --config tests/runner-acceptance/vitest.config.ts`: 19
passed.
- `pnpm test:e2e:runner -- --list --suite everyday-workflows --group
reliability`: the seven `everyday-workflows.runner-codex.daytona.<case>`
cells show `gpt-6.1-sol` with `OPENAI_API_KEY,DAYTONA_API_KEY`.
`--matrix-json` gives 16 reliability cells with the same credentials as
before. `--list --all` shows no `gpt-5.6-sol` cell.
- Typecheck: `adapter-utils`, `adapter-codex-local`, `server`, `ui`,
`paperclip-runner` (TypeScript), and `pnpm test:e2e:runner:typecheck`.
- `pnpm check:token-gates`: clean.
- Not run: paid cells, Rust tests (no Rust change), the browser suites,
and the full `pnpm -r typecheck` / `pnpm build` (CI runs them).

## Risks

- Agents without an explicit model change model on their next save or
normalization, and Paperclip Runner rows with a blank model use
`gpt-6.1-sol` at execution. Stored models, including `gpt-5.6-sol`, are
never rewritten. No migration is necessary.
- `gpt-6.1-sol` needs Codex CLI 0.159.0 or newer with ChatGPT sign-in.
The runner pins `@openai/codex@0.160.0`. On a remote target with an
older image CLI, the existing compatibility check falls back to
`gpt-6-sol` and then `gpt-5.6-sol`, and that probe now runs for
default-model agents too. A legacy `codex_local` agent created with the
new default on a host with an older Codex CLI gets the existing
actionable "upgrade Codex" Test result.
- Qualification: the native Codex profile uses `adapter_constant` model
qualification, so it follows the default. No qualification gate is
dropped. The ACPX Codex qualification selection moves to `gpt-6.1-sol`.
Its next qualification run uses the new model. The provider-usage
cache-policy attribution stays limited to `gpt-5.6-sol`.
- Runner E2E history: the Codex cells change their suite definition
hashes, so earlier `gpt-5.6-sol` results are a separate cohort and do
not count as current.
- The `gpt-6.1-sol` scheduled price uses the file's existing `expiresAt`
(2026-11-19). It needs the same review as the other entries before then.
- No `.github/` change. The Reliability queue-steer cell keeps the
`runner-codex` profile id, so the existing workflow credential and setup
steps still match.

> For core feature work, check [`ROADMAP.md`](ROADMAP.md) first and
discuss it in `#dev` before opening the PR. Feature PRs that overlap
with planned core work may need to be redirected — check the roadmap
first. See `CONTRIBUTING.md`.

## Model Used

- Claude Opus 5.5 (Anthropic), model ID `claude-opus-5-5`, running in
Claude Code with tool use (shell, file edits, web fetch of the OpenAI
pricing page).

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have searched GitHub for duplicate or related PRs and linked
them above
- [x] I have either (a) linked existing issues with `Fixes: #` / `Closes
#` / `Refs #` OR (b) described the issue in-PR following the relevant
issue template
- [x] I have not referenced internal/instance-local Paperclip issues or
links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip`
URLs)
- [x] My branch name describes the change (e.g. `docs/...`, `fix/...`)
and contains no internal Paperclip ticket id or instance-derived details
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [ ] All Paperclip CI gates are green
- [ ] Greptile is 5/5 with no open P2s, recommendations, or follow-ups
- [x] I will address all Greptile and reviewer comments before
requesting merge

Related: #19604 (commits the Reliability TestOps identities; this PR
changes only `steeringProfile` in the same file).

🤖 Generated with [Claude Code](https://claude.com/claude-code)

Co-authored-by: Claude Opus 5.5 <noreply@anthropic.com>
2026-11-06 15:35:34 -06:00
Nicky LeachandClaude Opus 5.5 05a19768ae fix(runner): require normalizedSessionId when validating PRP events (#19615)
## Thinking Path

> - Paperclip is the open source app people use to manage AI agents for
work
> - The Paperclip Runner reports native session activity as PRP events
> - `validatePrpEvent` checks an event against the published event
schemas and then returns it as a `PrpEvent`
> - The `PrpEvent` type requires `normalizedSessionId`, but the schemas
leave it optional, so the validator accepts events that the type forbids
> - Every producer sets the field, and the consumers compare it to the
expected session
> - This pull request makes `validatePrpEvent` reject an event without
`normalizedSessionId`
> - The benefit is that a validated event now always matches its type

## Linked Issues or Issue Description

No issue exists. #18839 listed this under its product questions and did
not change it. #19495 fixes the other Runner contract types from that
list.

**What existing behavior does this improve?**

`validatePrpEvent` in
`packages/paperclip-runner/src/protocol/replay-contract.ts` returns `{
ok: true, event: PrpEvent }` for an event without `normalizedSessionId`.

**Current behavior**

- The TypeScript `PrpEvent` type requires the field. The Rust event
structs also require it (`normalized_session_id: String`).
- The published schemas (`protocol/schemas/event*.schema.json`) leave it
optional.
- Validated events go into event arrays, reducers and the control-plane
callback, and all of them expect the field. A plain type change to
optional shows 12 such places in the Runner.

**Proposed behavior**

After the schema check passes, `validatePrpEvent` rejects an event that
has no `normalizedSessionId`. The issue has the code `schema_validation`
and the path `/normalizedSessionId`. The schema still checks the field's
type and length when the field is present.

**Reason and benefit**

The validator, the type and both producers then agree. The published
schemas, their manifest hashes and the generated standalone validators
do not change.

**Breaking changes**

An event without `normalizedSessionId` now fails validation. No producer
in this repository creates such an event. The replay fixtures and golden
snapshots include the field.

## What Changed

- `packages/paperclip-runner/src/protocol/replay-contract.ts`:
`validatePrpEvent` requires `normalizedSessionId` after the schema
check.
- `packages/paperclip-runner/src/protocol/replay-contract.test.ts`: new
test. A fixture event passes, and the same event without
`normalizedSessionId` fails with the new issue.

## Verification

- Runner, in `packages/paperclip-runner` after `pnpm run
test:typescript:prep`:
- `pnpm exec vitest run` (the full Runner TypeScript suite): 299 of 309
files passed, and 16 tests in 9 files failed.
- I ran those 9 files again by themselves: 231 of 233 tests passed. The
2 remaining failures were 20-second timeouts in
`src/drivers/cursor-cloud/artifact-delivery.test.ts` and
`src/drivers/cursor-cloud/cursor-cloud-driver.test.ts`.
- I ran those 2 files again by themselves: all 117 tests passed. They
also pass with the master validator. So all 16 failures were load
timeouts, not results of this change.
- `pnpm run check:replay-goldens`: "Replay golden snapshots and parity
summaries are current."
- `tsc --noEmit` passes for the Runner `tsconfig.json`,
`tsconfig.surfaces.json` and `tsconfig.test.json`.
- Server:
  - `cd server && pnpm typecheck`: passes.
- I ran the 29 server test files that import `acknowledged-native-stop`
or `native-session-executor`. 27 files passed.
- `dot-runner.test.ts` failed at first because `cargo` was not on PATH.
With `cargo` on PATH, it passes.
- `heartbeat-process-recovery.test.ts` fails on my machine with
timeouts. These failures are not caused by this change: two of the
failing tests fail in the same way when I use the master
`replay-contract.ts`. No failure output mentions PRP events or
`schema_validation`. CI runs this file.
- `pnpm verify` selects a broad run for this change (exit 2). Required
CI supplies that coverage.

## Risks

- Medium-low risk. This is a runtime change to a protocol validator. The
server validates stored events again (`native-session-executor.ts`,
`acknowledged-native-stop.ts`). A stored event without the field would
now fail validation. The producers that wrote those events always set
the field, so I expect no such rows.
- The Rust event structs already reject an event without the field.

## Model Used

- Claude Opus 5.5 (`claude-opus-5-5`) in Claude Code, with tool use
(shell, file edits) and extended thinking.

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have searched GitHub for duplicate or related PRs and linked
them above
- [x] I have either (a) linked existing issues with `Fixes: #` / `Closes
#` / `Refs #` OR (b) described the issue in-PR following the relevant
issue template
- [x] I have not referenced internal/instance-local Paperclip issues or
links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip`
URLs)
- [x] My branch name describes the change (e.g. `docs/...`, `fix/...`)
and contains no internal Paperclip ticket id or instance-derived details
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [x] All Paperclip CI gates are green
- [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups
- [x] I will address all Greptile and reviewer comments before
requesting merge

🤖 Generated with [Claude Code](https://claude.com/claude-code)

Co-authored-by: Claude Opus 5.5 <noreply@anthropic.com>
2026-11-06 13:30:26 -08:00
Nicky LeachandClaude Opus 5.5 a7d3d4b78c fix(runner): rotate local and external authority through one resumable path (#19547)
## Thinking Path

> - Paperclip is the open source app people use to manage AI agents for
work
> - The Paperclip Runner moves a native session from one run to the next
with an authority rotation, for Codex and for every ACPX provider
> - A rotation archives the prior run's controller state under
`authority-epochs/` and archives the Runner state, locally or on an
external Runner host
> - If the run fails after the rotation but before the new Runner
starts, retry preparation restores the prior run's controller checkpoint
into the session root
> - The retry then finds an active `control-plane` next to the archive
marker and fails with `native_runner_authority_archive_conflict`. Every
later run for the session fails the same way
> - The local and external rotations were two copies of the same steps,
with different retry rules, and the sandbox archive script had a third
set of rules
> - This pull request gives every provider and Runner placement one
resumable rotation path, with the same retry rules for controller state
and Runner state
> - The benefit is that one failed startup no longer makes a native
session unusable

## Linked Issues or Issue Description

No public issue exists. Bug description:

**What happened?**
A warm Codex session on an external (plugin) Runner failed its first
attempt after the authority rotation finished. The two automatic retries
both failed with `native_session_recovery_failed: Error:
native_runner_authority_archive_conflict`, and the run stopped. On disk,
the session root had
`authority-epochs/epoch-<key>/control-plane/control-plane-state.json`
and an active `control-plane/control-plane-state.json` with the same
identity (in this case, also the same sha256). The remote Launcher had
already archived the Runner state under the same key.

**Expected behavior**
A retry resumes the interrupted rotation. The rotation already supports
this when only the archive marker exists.

**Steps to reproduce**
1. Run a native Codex or ACPX session on an external Runner.
2. Start a new run for that session. Make the new Runner fail to start
after the rotation finishes.
3. Let the run retry. Retry preparation (`restoreWarmRunnerdController`
/ `restorePerTurnRunnerdController` →
`restoreNativeControllerProjections`) restores the prior run's
controller checkpoint into the session root.
4. The retry fails with `native_runner_authority_archive_conflict`. All
later runs for the session also fail.

The new `authority rotation after the prior controller state is
restored` tests reproduce steps 2–4 directly.

**Paperclip version or commit**
`master` at 35280516c0.

**Deployment mode**
Hosted, with a remote (plugin) Runner environment.

**Agent adapter(s) involved**
Codex (native Paperclip Runner). ACPX providers use the same rotation
code.

## What Changed

- **One rotation path.** `rotateAuthorityEpoch` replaces
`rotateLocalAuthorityEpoch` and `rotateExternalAuthorityEpoch`. The only
difference between Runner placements is a `RunnerStateArchive` (`read`,
`archive`):
- `localRunnerStateArchive(root)` for Runner state under `<root>/runner`
  - `#externalRunnerStateArchive()` for a plugin task or a sandbox host
- **One caller.** The transport chooses the rotation source (the live
control plane, or the latest archive), then makes one call. Locally
owned state is still quarantined on failure.
- **Committed rotation, normalized once.** Retry preparation restores
the prior run's controller checkpoint, but an earlier attempt may
already have archived that authority and its Runner state.
`takeCommittedRotation` runs right after the transport reads the control
plane. When the epoch archive for the active copy's exact identity
exists, it removes the restored copy and continues on the archive-only
path. Every later check (the warm-handoff evidence read, the
source-attachment settlement read, and the rotation) then sees the state
the rotation committed, instead of reading retired live Runner state. A
copy that still holds an unfinished warm transition, staged attachment,
or pending `run.attach` fails closed.
- **Restored controller state.** When the epoch archive exists, an
active control plane with the same schema and the exact archived
identity is a copy of authority that the rotation already retired. The
rotation removes it and resumes from the archived snapshot. This
compares identity, not bytes, because a checkpoint restore serializes
the state again and drops fields such as `ackedSourceSeq`. Any other
active state still fails closed.
- **Duplicate Runner state.** Local Runner state now follows the
computer Launcher's rules: move it, accept it already archived, drop a
byte-identical live copy beside the archive, or fail closed. The local
archive also checks that the live state is suspended before it moves it.
- **Sandbox archive script.** The script is now
`REMOTE_RUNNER_AUTHORITY_ARCHIVE_SCRIPT` and follows the same rules. It
uses `cmp` for the duplicate check and fails closed when `cmp` is not
available.
- **Sandbox host preparation after a resumed rotation.** A resumed
rotation archives the remote Runner state without preparing the host
first. When `archiveExternalRunnerState` succeeds, the server now
records the archived snapshot path. The launch's host preparation
(`inspectRemoteHarnessState`) validates that snapshot instead of the
missing live `runner-state.json`, with the same provider-state and
identity checks. Only these host preparation checks use the archived
snapshot; close checkpointing and backup-restore verification always
inspect the live `runner-state.json`. The SSH staging check treats it as
present, so retired state is not staged back.
- **Host preparation.** The external archive prepares its host only when
it reads live Runner state. Before, only one of the two caller branches
prepared the host. A resumed rotation finds the state already archived,
and preparing again could stage it a second time.

## Verification

- `npx vitest run src/live/runnerd-codex-transport.test.ts -t
"rotation"` in `packages/paperclip-runner`: 16 passed.
- External and local rotations with a byte-identical, a re-serialized,
and an other-authority restored control plane. The first two resume from
the archived snapshot. The third fails closed and keeps the copy.
- Local rotation with an identical duplicate Runner state (resumes) and
a different duplicate (fails closed and keeps it).
- The existing crash-before and crash-after remote archive retry cases.
- Before the source change, the byte-identical external case failed with
`native_runner_authority_archive_conflict`.
- `npx vitest run src/live/runnerd-codex-transport.test.ts -t "transport
retry after a committed rotation"` in `packages/paperclip-runner`: 4
passed. These go through the transport's real start path. A completed
warm handoff and a source attachment hook now resume from the archive;
before the normalization, both read the archived live Runner state and
failed. An unfinished warm transition and a pending attachment fail
closed; before, the pending attachment was silently dropped.
- `npx vitest run
src/services/native-runtime/native-session-executor.test.ts -t "remote
authority archiv"` in `server`: 6 passed. Five new cases run the real
archive script with `sh` against temporary files: a new archive, an
existing archive, an identical duplicate, a different duplicate, and no
state. The existing mocked archive test also passes.
- `npx vitest run
src/services/native-runtime/native-session-executor.test.ts -t "resumed
rotation archived"` in `server`: 2 passed. A resumed sandbox with a
retained backup goes through the real archive script and host
preparation. It failed with `runner_harness_state_mismatch:
resumed_unavailable` before the host preparation fix. A settled close
checkpoint with no live Runner state then fails closed with
`runner_remote_checkpoint_incomplete`, rather than checking the archived
snapshot. Without a completed rotation, a missing live state still fails
closed.
- `pnpm run typecheck:typescript` in `packages/paperclip-runner` and
`node scripts/typecheck-layers.mjs` in `server`: pass.
- The full `runnerd-codex-transport*.test.ts`,
`cursor-cloud-runner-launch.test.ts`, and adoption test files fail on
the same 110 tests with and without this change. These tests need the
built `paperclip-runnerd` binary, which needs `cargo`. `cargo` is not
installed locally, so CI covers them.

## Risks

- The change is only on the rotation path. A rotation that has no
archive marker behaves as before: it reads and checks live Runner state,
then archives the control plane.
- A rotation removes an active control plane only when an archive for
that exact identity exists and the active copy has the same schema and
identity. A new run's authority has a different identity, so it cannot
match.
- On a resume, the rotation now uses the archived controller snapshot,
not the caller's copy. The archive is the exact pre-rotation state. A
checkpoint restore can omit fields from it.
- An external Runner whose options define `readRunnerState` and
`archiveExternalRunnerState` but not `prepareExternalRunnerState` can
now rotate a live control plane. Before, that branch required the
prepare hook. The plugin and sandbox drivers define all three.
- The sandbox duplicate check needs `cmp`. A host without `cmp` fails
closed as before.

## Model Used

- Claude Opus 5.5 (`claude-opus-5-5`), Anthropic, used through Claude
Code with tool use (shell, file edits, test runs). It diagnosed the
failure from the run events, the server logs, and the on-disk controller
and Launcher state, then wrote the fix and the tests.

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have searched GitHub for duplicate or related PRs and linked
them above
- [x] I have either (a) linked existing issues with `Fixes: #` / `Closes
#` / `Refs #` OR (b) described the issue in-PR following the relevant
issue template
- [x] I have not referenced internal/instance-local Paperclip issues or
links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip`
URLs)
- [x] My branch name describes the change (e.g. `docs/...`, `fix/...`)
and contains no internal Paperclip ticket id or instance-derived details
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [x] All Paperclip CI gates are green
- [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups
- [x] I will address all Greptile and reviewer comments before
requesting merge

🤖 Generated with [Claude Code](https://claude.com/claude-code)

---------

Co-authored-by: Claude Opus 5.5 <noreply@anthropic.com>
2026-11-06 13:27:55 -08:00
github-actions[bot]andlockfile-bot e28158b353 chore(lockfile): refresh pnpm lockfiles (#19617)
## Thinking Path

> - Paperclip uses a dependency lock for reproducible builds.
> - Dependency changes on master need matching lock entries.
> - Paid eval reports also pin a reviewed offline correction.
> - Reports must install before paid model work starts.
> - This automated PR keeps the lock and report proof together.

## Linked Issues or Issue Description

**What happened?**

Dependency manifests on master changed after the last committed lock
refresh.

**Expected behavior**

Frozen installs must match those manifests. Eval reports must retain
matching offline lock proof.

**Steps to reproduce**

Run a frozen install before and after this lock refresh.

## What Changed

- Refresh the dependency lock from the manifests on master.
- Refresh the sandbox provider lockfiles from their manifests on master.
- Include the matching offline report correction and hashes.

## Verification

- Pinned pnpm resolution completed with lifecycle scripts disabled.
- The report proof refresh accepted the reviewed committed baseline.
- The workflow rejected changes outside the lock and report proof files.

## Risks

The lockfile bot merges this PR without CI or review when every added
package version is at least 3 days old on npm. Otherwise the PR waits
for a maintainer, and the daily refresh tries again. The bot merges only
the exact commit this workflow generated from manifests already reviewed
on master. Unknown report lock baselines remain blocked. This update
changes no permissions or paid enable gates.

## Model Used

None — generated by pnpm and the deterministic report-lock updater.

## Checklist

- [x] Thinking path and problem description included
- [x] Generated lock and matching report proof included
- [x] Release-age gate decides between bot merge and maintainer review

Co-authored-by: lockfile-bot <lockfile-bot@users.noreply.github.com>
2026-11-06 21:08:43 +00:00
DottaandPaperclip b55d8a9201 fix(runner): retain admitted OpenCode pack on ordinary continuation (#19558)
## Thinking Path

> - Paperclip manages AI agents and preserves their work across runs.
> - Native OpenCode turns can restore a saved provider session after the
prior daemon stops.
> - The Rust provider binds that saved state to exact qualified launch
paths and artifact bytes.
> - Ordinary continuation selected the current provider pack, although
live reattachment retained the admitted pack.
> - A new proxy or a diagnostics setting could therefore replace the
launch profile behind saved state.
> - This pull request retains the recorded pack for ordinary OpenCode
continuation with a verified durable binding.
> - The benefit is compatible continuation without weakening artifact
integrity or granting replay authority.

## Linked Issues or Issue Description

Refs: #17512, #18237. These added saved authority and compatible pack
reuse. This change covers ordinary OpenCode continuation.

**What happened?**

An ordinary remote OpenCode continuation could select a newer pack while
restoring its existing provider session. The Rust recovery guard then
rejected the changed launch profile. The same error can occur after a
controller release changes the bundled proxy.

**Expected behavior**

A continuation with a valid saved binding and pack receipt uses the same
admitted artifacts. If those artifacts are unavailable, it holds the
saved state instead of selecting another pack or creating a provider
session.

**Steps to reproduce**

1. Admit a remote OpenCode session with a qualified protected provider
pack.
2. Persist its pack receipt and suspended durable Runner state.
3. Change the controller bundle to a valid pack with a different proxy
digest.
4. Start an ordinary continuation with diagnostics enabled.

The new executor regression fails before the repair because selection
rejects the available original pack in favor of the new bundle. It
passes after the repair.

## What Changed

- Retain the saved provider pack for ordinary OpenCode continuation with
a verified durable session binding.
- Keep provider-pack retention independent of surviving-daemon identity:
a new daemon records its current binary, and an authorized continuity
break restores normal compatible pack selection.
- Test retained pack selection after a proxy upgrade and fail closed
when only a newer pack is available.
- Test the real Rust executor with changed, valid proxy file bytes. It
rejects drift without changing saved state and accepts the original
artifacts again.
- Document the selection rule and its limits.

## Verification

- Initial prevention focused Vitest: 220 passed across native session
execution, pack authority, pack verification and pack preparation. The
executor regression was observed failing before the production change.
- Rust native provider tests: all five OpenCode tests passed. These
include the existing drift guard, actual changed proxy bytes, original
artifact restoration and restart-lost turn behavior.
- Advisory review follow-up: reproduced stale daemon identity in the
actual executor and incompatible pack selection after a governed
continuity archive. Both fail before their corresponding repairs and
pass after them. Added an executor regression for a missing authority
receipt; it remains at the current release integrity gate without
creating a new receipt.
- Updated head `639c080856` integrates master `17901d74ba` by normal
merge. Affected Vitest: 202 passed across four files, including all new
review regressions; all seven server typecheck layers passed. Exact-head
CI and fresh Greptile/Paperclip review are pending. The prior head had
57 successful checks plus successful Snyk and Greptile 5/5; those
results do not qualify this revision.
- Environment: macOS arm64, Node 26.4.0, locked pnpm 9.15.4
dependencies, controlled remote command boundary and real Rust provider
executor. No paid provider calls or hosted retries.
- This is a bounded prevention change. It does not deliver historical
provider artifacts to a replacement sandbox or replacement controller.
Missing saved receipts or unavailable old artifacts remain a separate
cold-recovery gap. No full hosted recovery is claimed.

## Risks

- A continuation now requires its exact recorded pack when it has a
durable binding. A newer installed pack cannot substitute for missing
historical bytes.
- Fresh launches, other providers and explicit continuity replacement
keep their existing paths. Current ownership, company, model, permission
and receipt binding checks remain in effect.
- The repair does not relax the Rust launch-profile guard, replay prior
tool effects, or authorize a new provider conversation. Existing
published review receipts remain history.

## Model Used

OpenAI Codex, GPT-6 family. The host does not expose the exact model ID
or context window. Capabilities used: reasoning, code editing, shell
execution, tests and authenticated read-only browser diagnostics.

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have searched GitHub for duplicate or related PRs and linked
them above
- [x] I have either (a) linked existing issues with `Fixes: #` / `Closes
#` / `Refs #` OR (b) described the issue in-PR following the relevant
issue template
- [x] I have not referenced internal/instance-local Paperclip issues or
links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip`
URLs)
- [x] My branch name describes the change (e.g. `docs/...`, `fix/...`)
and contains no internal Paperclip ticket id or instance-derived details
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [ ] All Paperclip CI gates are green
- [ ] Greptile is 5/5 with no open P2s, recommendations, or follow-ups
- [x] I will address all Greptile and reviewer comments before
requesting merge

---------

Co-authored-by: Paperclip <noreply@paperclip.ing>
2026-11-06 14:21:17 -06:00
DottaandClaude Opus 5.5 24508a8ba5 perf(dev): add agent preflight with a shared content-keyed build cache (#19555)
perf(dev): add agent:preflight with a shared content-keyed build cache

Agent worktrees each built the Runner from nothing: a cold cargo debug and
release build, the Runner TypeScript build and its checks, about 8 minutes
per fresh worktree on a loaded machine.

`pnpm agent:preflight` replaces the manual install + Runner build sequence.
It skips steps whose inputs are unchanged and reuses other worktrees'
results from ~/.cache/paperclip/agent-build:

- Runner and eval-kernel dist, keyed by the Runner build-input digest and
  the toolchain
- Runner debug binaries, keyed by every file the Rust build reads
- a cargo seed with third-party crates only; the Runner crate is scrubbed
  because cargo records its out-of-package includes by absolute path

Entries are written once with an atomic rename and restored as APFS clones.

Also exclude provider-assets from the Runner build inputs. The build writes
that directory itself, so the first build in every fresh checkout saw its
inputs change and never recorded a build stamp.

Co-Authored-By: Claude Opus 5.5 <noreply@anthropic.com>
2026-11-06 14:01:54 -06:00
DottaandClaude Opus 5.5 86e9c9354d test(opencode): pin Stop during a pending MCP tool call (#19550)
## Thinking Path

> - Paperclip is the open source app people use to manage AI agents for
work
> - The native runner runs OpenCode agents and settles their cost after
each run
> - An operator can stop a run while the agent waits inside a Paperclip
MCP tool call
> - Before #18610, OpenCode then kept calling the model after the Stop.
The turn never closed, so the run cost never settled
> - #18610 fixed the cause, but no test covers a Stop during a pending
MCP tool call
> - This pull request adds that regression test at the driver boundary
> - The benefit is that a change to empty-answer recovery or
interruption cannot bring back runaway model work after a Stop

## Linked Issues or Issue Description

Refs #18610 (the fix that this test pins)
Refs #19497 (accounting that waits on a terminal run receipt)

**What happened?**

A board operator stopped a native OpenCode run. The agent was blocked
inside a gated `paperclip_call_assigned_tool` call. The runner
acknowledged the interrupt, but OpenCode made 8 more model requests in
the next 60 seconds. No `turn.cancelled` event arrived. The run stayed
at `costAccountingPending: true` and `accountingReceiptReady: false`, so
cost accounting never settled.

**Expected behavior**

A Stop aborts the provider. The turn closes with `turn.cancelled`. The
provider makes no new model requests. Cost accounting then settles from
the final receipt.

**Steps to reproduce**

1. Start an OpenCode turn with a dynamic Paperclip tool whose handler
does not return.
2. Let the provider call that tool through the MCP bridge.
3. Fail the pending call (runnerd does this first on Stop), then
interrupt the turn.
4. Let OpenCode report the abort as a bare `session.idle`.
5. Before #18610, the driver sent a corrective "give a final answer"
prompt. The provider then continued work.

**Root cause**

The driver sent `/session/:id/abort` correctly. OpenCode 1.18.34 aborts
correctly, and sometimes reports the abort only as `session.idle`.
Empty-answer recovery treated that idle as an incomplete answer and sent
a new prompt. #18610 added `#interruptedTurnId`, so recovery now stops
for an interrupted turn. The failing eval ran on `3b66c3c144`, which is
earlier than #18610.

## What Changed

- Add
`packages/paperclip-runner/src/drivers/opencode/interrupt-pending-tool-call.test.ts`.
It calls the real MCP bridge over HTTP, holds the dynamic tool call
open, and interrupts the turn. It checks three abort reports:
- `idle-after-settle`: runnerd fails the call, then the interrupt, then
a bare idle.
- `idle-before-settle`: an idle while the call is still pending, then
the late failure, then an idle.
  - `aborted-error`: `MessageAbortedError`.
- Each case asserts one prompt only, exactly one terminal event
(`turn.cancelled`), and no empty-response correction diagnostic.
- No product code changes. Master already has the fix.

## Verification

- `pnpm --filter @paperclipai/paperclip-runner exec vitest run
src/drivers/opencode/interrupt-pending-tool-call.test.ts`: 3 passed on
this branch.
- The same test at `3b66c3c144` (before #18610): `idle-after-settle` and
`idle-before-settle` fail with 2 prompts (the corrective prompt).
`aborted-error` passes. This matches the eval symptom.
- `vitest run src/drivers/opencode/`: 14 files, 185 tests passed.
- `tsc -p tsconfig.test.json --noEmit` for the runner: no new errors. A
pre-existing error in `src/eval/workflow-harness.ts` comes from an
unbuilt local eval-kernel package.
- `server` `native-stop-accounting.integration.test.ts`: 5 passed. This
confirms that settlement completes after a Stop when the terminal event
and final receipt arrive.
- Manual, not committed: the same flow with the real OpenCode 1.18.34
binary, a mock OpenAI-compatible model, and a gated tool. I tested it
through the driver alone and through runnerd, the proxy, and the driver.
The interrupt produced `turn.cancelled`, and the model received no more
requests. I also tried different gate-release and model-latency timings.
- The new test waits for the terminal event with a bounded
`expect.poll`, not a fixed delay (review feedback).
- `pnpm verify` exited 2 (broader verification required) because the new
test file is outside the resolved test graph. CI supplies the broad
coverage.

## Risks

Low risk. This change adds one test file only. The test uses the
existing fake OpenCode fixture and an injected `fetch`. It uses real
timers with short waits.

> For core feature work, check [`ROADMAP.md`](ROADMAP.md) first and
discuss it in `#dev` before opening the PR. Feature PRs that overlap
with planned core work may need to be redirected — check the roadmap
first. See `CONTRIBUTING.md`.

## Model Used

- Claude Opus 5.5 (Anthropic), model ID `claude-opus-5-5`, used in
Claude Code with tool use (shell, file edits, code execution) and
extended reasoning.

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have searched GitHub for duplicate or related PRs and linked
them above
- [x] I have either (a) linked existing issues with `Fixes: #` / `Closes
#` / `Refs #` OR (b) described the issue in-PR following the relevant
issue template
- [x] I have not referenced internal/instance-local Paperclip issues or
links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip`
URLs)
- [x] My branch name describes the change (e.g. `docs/...`, `fix/...`)
and contains no internal Paperclip ticket id or instance-derived details
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [x] All Paperclip CI gates are green
- [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups
- [x] I will address all Greptile and reviewer comments before
requesting merge

🤖 Generated with [Claude Code](https://claude.com/claude-code)

---------

Co-authored-by: Claude Opus 5.5 <noreply@anthropic.com>
2026-11-06 13:23:24 -06:00
TonioandPaperclip c650f36007 fix(ui): refine agent profiles, identity editing, and list actions (#19535)
## Thinking Path

> - Paperclip is the open source app people use to manage AI agents for
work.
> - Agent pages expose identity files, reporting relationships, and
runtime settings.
> - Several controls had inconsistent spacing, weak navigation, or
misleading save feedback.
> - Empty task-row detail slots also reduced the title width before
truncation.
> - This pull request fixes those behaviors and aligns the reviewed UI
details.
> - The result is clearer agent editing and more readable task and agent
lists.

## Linked Issues or Issue Description

**What happened?**
Agent headers and file controls had inconsistent layout. The Identity
footer appeared without edits and did not provide clear save
confirmation. File names could wrap or omit the Markdown suffix. Task
titles truncated while empty detail slots occupied the row.

**Expected behavior**
Keep headers and actions aligned. Reveal the Identity footer only for
changes or save feedback. Use valid Markdown file names and actual file
dates. Let titles use available space.

**Steps to reproduce**
1. Open an agent overview, then its Identity tab.
2. Edit, undo, save, copy, and add an instruction file.
3. Resize the file panel and inspect file names and date labels.
4. Hover an agent row and inspect the Chat action and tooltip.
5. Open a task list with no recovery or external details and inspect
title width.

Related: #18716 is the prior UI bundle. #16934 and #14483 concern role
editing; this change does not add a role picker.

## What Changed

- Refine the character header, inline title and name editing, crown
position, runtime shortcut, and Chat/New task actions.
- Align profile metadata and manager selection; hide empty direct
reports.
- Refine Identity panels, Markdown filename validation, file-row hover,
truncation, Paper Mono typography, and copy feedback.
- Add a viewport-bound save footer with dirty, saving, and saved states.
Keep undo/discard separate from successful saves.
- Return recorded creation or modification dates for instruction files.
Reuse the active file transaction for metadata reads to avoid exhausting
the small connection pool.
- Reveal the agent-row Chat icon and label on hover, with a standard
delayed tooltip.
- Collapse empty task-row details so titles can use the available width.

## Verification

- Browser checks covered the local overview and Identity flows, narrow
file panels, successful file creation/update, undo/discard, header
navigation, row hover, tooltip delayed-open state, and full task titles.
- Focused instruction, save-footer, date, font-asset, and task-row tests
passed during development. After review, 55 file/instruction tests
passed, including cold restoration with recorded and unknown dates;
server typecheck and 18 immediate-save response tests also passed.
- Full `pnpm -r typecheck` and `pnpm build` passed after rebase onto
current master. The complete `pnpm test:run` attempt hit a 15-second
timeout in the existing chat Retry HTTP integration test; that case
passed in isolation (1 test passed). A second full attempt hit timeouts
in two other chat integration cases (GitHub webhook draining and
delivery retry budget); both passed in isolation without increasing
timeouts. All 55 remote checks passed on f31405a730, including the full
test matrix, build, typecheck, and final verification gate.
- `pnpm check:token-gates`, `node scripts/check-maps.mjs`, and `git diff
--check` passed on the submitted revision.

## Risks

- File dates are optional. Managed files require recorded dates because
restored projections have synthetic filesystem timestamps. External
files can use modification time; unknown dates are omitted.
- Save-footer timing depends on animation completion; reduced-motion and
failed-save paths have tests.
- Global Paper Mono typography can change text widths. Browser checks
covered the edited surfaces.
- No schema migration or new execution permissions are introduced.

## Model Used

OpenAI Codex, GPT-6, with repository tools, code execution, and browser
verification. The exact serving model ID and context-window size are not
exposed in this session.

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have searched GitHub for duplicate or related PRs and linked
them above
- [x] I have either (a) linked existing issues with `Fixes:` / `Closes:`
/ `Refs:` OR (b) described the issue in-PR following the relevant issue
template
- [x] I have not referenced internal/instance-local Paperclip issues or
links (only public GitHub references)
- [x] My branch name describes the change and contains no internal
Paperclip ticket id or instance-derived details
- [x] I have run the relevant tests locally and they pass; full-run
timeout limitations and successful isolated reruns are documented above
- [x] I have added or updated tests where applicable
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [x] All Paperclip CI gates are green
- [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups
- [x] I will address all Greptile and reviewer comments before
requesting merge

---------

Co-authored-by: Paperclip <noreply@paperclip.ing>
2026-11-06 11:14:56 -08:00
Nicky LeachandClaude Opus 5.5 7dfdc97b9f fix(deps): let Dependabot update the sandbox providers (#19489)
## Thinking Path

> - Paperclip is the open source app people use to manage AI agents for
work
> - Sandbox providers (`packages/plugins/sandbox-providers/*`) are
standalone published packages. `pnpm-workspace.yaml` keeps them out of
the root workspace on purpose.
> - `.github/dependabot.yml` watches only `/`, so Dependabot never saw
the providers.
> - Because of this, the Kubernetes provider stayed on zod 3
(GHSA-mrhx-c7xc-m3w5) after the rest of the repo moved to zod `^4.6.6`.
#18839 fixed it by hand.
> - We do not want to keep these versions current by hand in many
places.
> - This pull request lets Dependabot update the providers, and keeps
each provider standalone.
> - The benefit is that a provider dependency that falls behind gets a
pull request that can pass CI.

## Linked Issues or Issue Description

Refs #18839 (adds `scripts/typecheck-sandbox-providers` and fixes
Kubernetes zod by hand).
Refs #18998 (a Dependabot pull request for the Pi distribution that
fails CI by design).

**What existing behavior does this improve?**
Dependabot version updates. They skip every package that the root pnpm
workspace excludes.

**Subsystem affected**
CI and dependency automation: `.github/dependabot.yml`,
`scripts/typecheck-sandbox-providers`.

**Current behavior**
Dependabot does not update the sandbox providers. A provider can stay on
an old or unsafe version, and nobody gets a pull request.

**Proposed behavior**
Dependabot updates the providers each week. Each pull request changes
the provider manifests and the lockfiles that CI installs frozen, so the
pull request can pass CI.

**Reason and benefit**
We stop having to find and fix old provider dependencies by hand.

## What Changed

- `.github/dependabot.yml`: add an npm entry for
`/scripts/typecheck-sandbox-providers`. Dependabot treats this workspace
as one unit. One pull request per dependency changes every provider that
uses the dependency and the shared `pnpm-lock.yaml` together. So the
entry needs no `groups`. One entry per provider would open a separate
pull request for each provider, and each one would fail the frozen
install in CI.
- `.github/dependabot.yml`: add an npm entry for
`/packages/plugins/sandbox-providers/daytona`. Daytona is the only
provider with its own lockfile, and the release build and the Daytona
end-to-end job install it frozen. Each lockfile has exactly one
Dependabot entry, so every pull request changes a manifest and its
lockfile together.
- Take Daytona out of the shared typecheck workspace. This pull request
does not commit `scripts/typecheck-sandbox-providers/pnpm-lock.yaml`:
since #19522, only the lockfile refresh workflow writes it. After merge,
the bot removes Daytona's packages from it (no other version changes;
checked with pnpm 9.15.4). Until then CI resolves it in place.
`scripts/typecheck-test-programs.mjs` now installs Daytona from its own
lockfile (`LOCKED_PROVIDERS`, with `--ignore-workspace`). A stale
lockfile is resolved in place for the run, for both installs.
- `.github/dependabot.yml`: add a comment that tells why the Pi and Kimi
runtime distributions have no entry (see Risks).
- `scripts/typecheck-sandbox-providers/pnpm-workspace.yaml`: list each
provider by its full path. Dependabot does not expand a workspace glob
that starts with `../`, so with the glob it saw no providers.
- `scripts/typecheck-test-programs.test.mjs`: add tests. They check that
the workspace list has no glob and matches `SANDBOX_PROVIDERS` without
`LOCKED_PROVIDERS`, that each locked provider has its lockfile, that a
locked provider installs frozen with `--ignore-workspace`, and that a
stale locked-provider lockfile is resolved in place.
- Add `.npmrc` (`auto-install-peers=true`) in
`scripts/typecheck-sandbox-providers` and in the Daytona provider.
Without it, Dependabot reads the root `.npmrc` (`false`). That rewrites
the lockfile settings, and the frozen install then fails. npm and pnpm
never publish `.npmrc`.
- `scripts/typecheck-sandbox-providers/package.json`: add
`"packageManager": "pnpm@9.15.4"`, the version CI uses. Without it,
Dependabot guesses pnpm 10.
- `doc/DEVELOPING.md`: say that contributors do not refresh or commit
Daytona's lockfile either, and that a new provider goes in both lists.

No provider moves into the root workspace. There is no pnpm catalog. The
root `pnpm-lock.yaml` does not change.

## Verification

I ran the real Dependabot updater on this branch with the Dependabot CLI
(`dependabot update ... --local`, updater image
`dependabot-updater-npm@sha256:c5a9451c…`):

- Before the change, the workspace entry loaded only
`cloudflare/bridge-template` (the one path without a glob). It skipped
all the other providers.
- After the change, `--dep typescript` gave one pull request. It changed
the 9 non-Daytona provider `package.json` files and the shared
`pnpm-lock.yaml`, and did not touch Daytona.
- `--dep wrangler` changed only the wrangler closure in the shared
lockfile. Before the `.npmrc` fix, the same run changed
`autoInstallPeers` to `false` and 757 lockfile lines.
- The Daytona entry (`--dep @daytonaio/sdk`) changed Daytona's
`package.json` and its own lockfile in one pull request, and kept
`autoInstallPeers: true`. It keeps the exact pin exact: `0.203.0`
becomes `0.227.3`.
- Both frozen installs (shared workspace, and Daytona with
`--ignore-workspace`) pass with pnpm 9.15.4.
- Dependabot installed `pnpm@9.15.4` from the new `packageManager`
field.

Other checks:

- `.github/dependabot.yml` passes the SchemaStore `dependabot-2.0`
schema (Ajv). A wrong key fails the same check.
- With pnpm 9.15.4, `install --resolution-only --ignore-scripts
--no-frozen-lockfile` in `scripts/typecheck-sandbox-providers` (the
lockfile bot's command) gives exactly the lockfile that passed the
frozen installs earlier in this pull request.
- The lockfile rule from #19522 allows this pull request's diff: it
changes no lock content.
- `node --test scripts/typecheck-test-programs.test.mjs`: the new test
and the provider tests pass. Two other tests need a root `node_modules`
(`tsc`), which my worktree did not have. CI runs them.

These checks cannot run before merge. GitHub reads `dependabot.yml` only
from the default branch. After merge, open Insights → Dependency graph →
Dependabot and make sure that the two new entries show no errors and run
on Monday.

## Risks

- A dependency in both a non-Daytona provider and Daytona (for example
`typescript`) gets two pull requests: one from each entry. Each one
passes alone, and they can merge in any order.
- The typecheck job now typechecks Daytona's tests against Daytona's own
lockfile instead of the shared one. Its versions are a little older (for
example vitest 4.1.11), so a type difference can show up there.
- Majors of shared dev tools (for example TypeScript 7, Vitest 5) come
as one pull request across all providers. It can need code changes
before it passes. That is the same as the root entry.
- Pi and Kimi get no version updates. Every direct dependency there is a
pinned provider release, and the pins feed the provider's ACPX
`commandDigest`. The Runner checks compare the Pi lock with
`PI_DISTRIBUTION_PINS`, and the Kimi build compares the lock SHA-256
with a pin. So any Dependabot change there fails CI (see #18998), and a
real upgrade starts saved sessions fresh. GitHub security alerts still
cover both lockfiles.
- The Pi zod `3.25.76` pin is still affected by GHSA-mrhx-c7xc-m3w5
(open alert). It is deliberate: `pi-acp@0.0.33` has `zod ^3.25.0` as a
direct dependency, not a peer. A fix needs a `pi-acp` release that
allows zod 4. This pull request does not change it.
- `packages/plugins/examples/plugin-orchestration-smoke-example` is also
outside the root workspace. It uses `workspace:*` dependencies, so it
cannot install alone, and this pull request does not cover it.

## Model Used

- Claude Opus 5.5 (`claude-opus-5-5`), Anthropic, used through Claude
Code with tool use (shell, file edits, local Docker runs of the
Dependabot CLI).

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have searched GitHub for duplicate or related PRs and linked
them above
- [x] I have either (a) linked existing issues with `Fixes: #` / `Closes
#` / `Refs #` OR (b) described the issue in-PR following the relevant
issue template
- [x] I have not referenced internal/instance-local Paperclip issues or
links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip`
URLs)
- [x] My branch name describes the change (e.g. `docs/...`, `fix/...`)
and contains no internal Paperclip ticket id or instance-derived details
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [x] All Paperclip CI gates are green
- [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups
- [x] I will address all Greptile and reviewer comments before
requesting merge

🤖 Generated with [Claude Code](https://claude.com/claude-code)

---------

Co-authored-by: Claude Opus 5.5 <noreply@anthropic.com>
2026-11-06 11:08:39 -08:00
DottaandClaude Opus 5.5 71313207eb fix(runner): continue after a restore-lost turn the checkpoint never bound (#19539)
## Thinking Path

> - Paperclip is the open source app people use to manage AI agents for
work
> - Native Codex and ACPX runs survive control-plane restarts: the
runner restores the provider conversation, and the control plane
continues the task from its checkpoint
> - When the runner restores a conversation after process loss, it
reports the turn that was active as lost on restore
(`provider_turn_lost_on_restore`)
> - A controller can die after the provider accepted a turn but before
that turn reached the checkpoint. Then the next recovery does not know
the turn that the runner reports as lost
> - In a restart chaos wave with two hard kills about 20 s apart, this
made the second recovery fail with "Provider turn terminal did not name
the active turn". The session close then became unrecoverable
> - This pull request lets recovery continue: the transport no longer
stalls a new turn start behind that report, and the Codex session
records the report as restored history
> - The benefit is that a task continues automatically after
back-to-back restarts, instead of failing and needing an operator

## Linked Issues or Issue Description

**What happened?**
A Codex task was resumed after a hard restart. A second hard restart
came about 20 s later. The second recovery failed at once with
`NativeProviderTerminalFailure: Provider turn terminal did not name the
active turn.`, and automatic recovery stopped. The session close could
not settle, which quarantined later work (that blast radius is fixed
separately in #19532).

**Steps to reproduce**
1. Start a native Codex task. Kill the control plane (SIGKILL) shortly
after the provider accepts a turn and before the next checkpoint is
saved.
2. Let restart recovery resume the run. Kill the control plane again
while the resumed run is active.
3. Observe the second recovery.

Durable evidence from the wave (runner journal of the run):
- Restart 1 (17:32:34.568): the provider accepted continuation turn T2.
The controller was killed 170 ms later, before T2 reached the
checkpoint.
- Recovery 1 started a new turn T3. The runner command result named T3
(seq 15). The restored runner then reported T2 as lost on restore (seq
20) before `turn.started` for T3 (seq 23). The transport held the T2
terminal while the T3 start was pending, and stopped pumping at it. So
T3 ran in the provider (items, a tool call) but the control plane never
accepted or checkpointed it.
- Restart 2: recovery found no active turn. The restored runner reported
T3 as lost on restore. The Codex session had never bound T3, so it
failed the protocol (`turn_binding_mismatch`).

**Expected behavior**
Recovery continues the task after each restart (R1).

**Actual behavior**
The run failed with a protocol error. Its close could not prove
settlement, so cleanup needed an operator.

## What Changed

- `runnerd-codex-transport.ts`: while a turn start is pending, the event
pump holds a terminal only when the terminal can belong to that turn.
When the durable command result names the new provider turn and the
terminal names a different turn, the pump delivers it and continues to
the new `turn.started`. A terminal that names no turn, or any terminal
before the command result, is still held.
- `codex-session-notifications.ts`: a `turn/completed` with status
`failed` and a recoverable `provider_turn_lost_on_restore` error, for a
turn that this session never bound (not active and not terminal), is
recorded as restored history with a `harness.diagnostic`
(`unbound_restored_turn_lost`). The session keeps its own turn. The
runner reports this cause only after it proved that the old provider
process ended and restored the conversation, so that turn can produce no
further work or result.
- Other terminals for an unbound turn (a completion, an ordinary
failure) still fail with `turn_binding_mismatch`.

## Verification

- Red before the fix, real `paperclip-runnerd` and fake Codex app
server: `pnpm --filter @paperclipai/paperclip-runner exec vitest run
src/live/runnerd-restart-continuation.test.ts -t "never bound"` failed
with `NativeProviderTerminalFailure: Provider turn terminal did not name
the active turn.` at `codex-harness-session.ts:207` via
`native-session-runtime.ts` (the same stack as the wave).
- Green after the fix: that test completes the run on `provider-turn-2`
with no `session.failed` and no `turn.failed`.
- New driver tests in `codex-app-server-driver.terminal-replay.test.ts`:
the restore-lost unbound turn is recorded (also on replay) and the
session's own turn completes. A completion or ordinary failure for an
unbound turn still fails the protocol.
- New transport unit test for the hold rule (`does not hold a pending
turn start behind another turn's restore-lost terminal`).
- Existing suites pass: `src/drivers/codex/`,
`src/native-session-runtime.test.ts`,
`src/live/runnerd-restart-continuation.test.ts`,
`src/live/runnerd-controller-outage.test.ts`,
`src/live/runnerd-codex-transport-warm-attachment.test.ts`,
`src/live/runnerd-codex-transport.test.ts` (turn-start cases). Three
tests timed out once at host load 51 and passed when rerun alone.
- `pnpm --filter @paperclipai/paperclip-runner typecheck:typescript`
passes.
- Live replay of the wave task: results are added in a comment below.

## Risks

- The transport change applies only when the command result already
named the new turn and the terminal names a different turn. A terminal
for the new turn keeps the existing fence that puts `turn.accepted`
first.
- The session change accepts only the runner's restart-interruption
cause. A lost turn's work is already in the restored conversation. The
continuation turn tells the agent to reconcile unfinished work.
- No profile, schema or pack contract changes. ACPX sessions that use
the same Codex harness session get the same behavior.

## Model Used

- Claude Opus 5.5 (`claude-opus-5-5`), Anthropic, with tool use and code
execution in Claude Code.

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have searched GitHub for duplicate or related PRs and linked
them above
- [x] I have either (a) linked existing issues with `Fixes: #` / `Closes
#` / `Refs #` OR (b) described the issue in-PR following the relevant
issue template
- [x] I have not referenced internal/instance-local Paperclip issues or
links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip`
URLs)
- [x] My branch name describes the change (e.g. `docs/...`, `fix/...`)
and contains no internal Paperclip ticket id or instance-derived details
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [ ] All Paperclip CI gates are green
- [ ] Greptile is 5/5 with no open P2s, recommendations, or follow-ups
- [x] I will address all Greptile and reviewer comments before
requesting merge

🤖 Generated with [Claude Code](https://claude.com/claude-code)

Co-authored-by: Claude Opus 5.5 <noreply@anthropic.com>
2026-11-06 13:02:25 -06:00
DottaandClaude Opus 5.5 d4d3383c97 fix(runner): scope cleanup quarantine to the session's task and conversation (#19532)
## Thinking Path

> - Paperclip is the open source app people use to manage AI agents for
work
> - Native runs (Codex, ACPX) execute through the runner's
`executeNativeSession`, which gates each new session behind cleanup of
earlier sessions
> - When a session close fails in a way that needs operator recovery
(`NativeSessionCloseUnrecoverableError`), the runner keeps a quarantine
entry for it
> - The admission gate keyed that quarantine by `[companyId, backend
kind, backend name]`, so one bad close blocked every later run of the
same backend in the whole company
> - In a restart chaos wave (two hard kills about 20 s apart), one Codex
session's close became unrecoverable. After that, every Codex run and
every Retry in the company failed in about 1 s with
`native_session_cleanup_quarantined`
> - This pull request scopes the gate to the resources that a retained
owner can still hold: its task (issue) and its provider conversation
(normalized session)
> - The benefit is that one failed close no longer stops unrelated
tasks, while the task and conversation that are really at risk stay
protected

## Linked Issues or Issue Description

**What happened?**
After two hard control-plane restarts about 20 s apart, one Codex
session close became unrecoverable. From then on, every Codex execution
in the company failed at admission with
`native_session_cleanup_quarantined: prior session cleanup requires
operator recovery…` (`retryQuarantinedSessionCleanups`). Board Retries
for four unrelated tasks were accepted and then failed at once.

**Steps to reproduce**
1. Run two native Codex tasks in one company (local runner).
2. Make one session's close throw `NativeSessionCloseUnrecoverableError`
(in the wave: a protocol failure after a second hard kill, then an
unsettled runner suspension).
3. Start or retry a different Codex task in the same company.

**Expected behavior**
Only work that shares a resource with the retained owner waits. Other
tasks run normally.

**Actual behavior**
Every later Codex run in the company fails within about 1 s, until the
server process restarts.

## What Changed

- `packages/paperclip-runner/src/native-session-runtime.ts`: the cleanup
domain is now `{ key, resources }`. `key` is the old backend key
(company, backend kind and name, optional remote cleanup scope).
`resources` are the session's issue and its normalized session (or its
run when it has no normalized session).
- The admission gate (`retryQuarantinedSessionCleanups`) and its
retained close owners block a new session only when the backend key
matches and at least one resource matches.
- The exact retirement paths (`completeRetainedNativeSessionCleanup`,
`completeTerminatedRemoteNativeSessionCleanup`,
`completeTerminatedLocalNativeSessionCleanup`) read the unchanged
backend key, so their behavior does not change.
- New regression test: an unrecoverable close on session A does not
block session B of another task. A session with the same issue, or with
the same normalized session, stays blocked.

Why this scope is safe: the resources that a retained owner can still
hold are its runner state root and its workspace. The server derives the
runner state root from the session scope (company, agent, workspace,
provider, normalized session). The workspace belongs to the task.
Different tasks already run concurrently on the same backend, so a
different task shares no resource with the retained owner that normal
concurrency does not already share.

## Verification

- Red before the fix: `pnpm --filter @paperclipai/paperclip-runner exec
vitest run src/native-session-runtime.test.ts -t "unrelated tasks of the
same backend"` failed with `native_session_cleanup_quarantined` for the
unrelated task (the RC-20 error).
- Green after the fix: the same test passes. The full file passes
(211/211).
- `pnpm --filter @paperclipai/paperclip-runner typecheck` passes.

## Risks

- A retained owner can no longer block a different task that shares a
project workspace. Concurrent tasks in a shared workspace are already
allowed, so this adds no new kind of overlap.
- The same task and the same conversation stay blocked. A Retry of the
task whose close failed can still be accepted and then fail at
admission. The trigger of that close is handled separately.

## Model Used

- Claude Opus 5.5 (`claude-opus-5-5`), Anthropic, with tool use and code
execution in Claude Code.

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have searched GitHub for duplicate or related PRs and linked
them above
- [x] I have either (a) linked existing issues with `Fixes: #` / `Closes
#` / `Refs #` OR (b) described the issue in-PR following the relevant
issue template
- [x] I have not referenced internal/instance-local Paperclip issues or
links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip`
URLs)
- [x] My branch name describes the change (e.g. `docs/...`, `fix/...`)
and contains no internal Paperclip ticket id or instance-derived details
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [ ] All Paperclip CI gates are green
- [ ] Greptile is 5/5 with no open P2s, recommendations, or follow-ups
- [x] I will address all Greptile and reviewer comments before
requesting merge

🤖 Generated with [Claude Code](https://claude.com/claude-code)

Co-authored-by: Claude Opus 5.5 <noreply@anthropic.com>
2026-11-06 12:39:31 -06:00
github-actions[bot]andlockfile-bot 17b4f972bf chore(lockfile): refresh pnpm lockfiles (#19534)
## Thinking Path

> - Paperclip uses a dependency lock for reproducible builds.
> - Dependency changes on master need matching lock entries.
> - Paid eval reports also pin a reviewed offline correction.
> - Reports must install before paid model work starts.
> - This automated PR keeps the lock and report proof together.

## Linked Issues or Issue Description

**What happened?**

Dependency manifests on master changed after the last committed lock
refresh.

**Expected behavior**

Frozen installs must match those manifests. Eval reports must retain
matching offline lock proof.

**Steps to reproduce**

Run a frozen install before and after this lock refresh.

## What Changed

- Refresh the dependency lock from the manifests on master.
- Refresh the sandbox provider lockfiles from their manifests on master.
- Include the matching offline report correction and hashes.

## Verification

- Pinned pnpm resolution completed with lifecycle scripts disabled.
- The report proof refresh accepted the reviewed committed baseline.
- The workflow rejected changes outside the lock and report proof files.

## Risks

The lockfile bot merges this PR without CI or review when every added
package version is at least 3 days old on npm. Otherwise the PR waits
for a maintainer, and the daily refresh tries again. The bot merges only
the exact commit this workflow generated from manifests already reviewed
on master. Unknown report lock baselines remain blocked. This update
changes no permissions or paid enable gates.

## Model Used

None — generated by pnpm and the deterministic report-lock updater.

## Checklist

- [x] Thinking path and problem description included
- [x] Generated lock and matching report proof included
- [x] Release-age gate decides between bot merge and maintainer review

Co-authored-by: lockfile-bot <lockfile-bot@users.noreply.github.com>
2026-11-06 18:09:43 +00:00
DottaandClaude Opus 5.5 30a0b5982e fix(runner): let Codex agents generate images with their existing provider key (#19516)
## Thinking Path

> - Paperclip is the open source app people use to manage AI agents for
work
> - The Paperclip runner launches Codex agents in an isolated app-server
with a sandboxed shell
> - On the Codex API path, the agent's OpenAI API key reaches only the
trusted app-server process, never the shell
> - The runner launched Codex with `--disable image_generation`, so
Codex's built-in image tool was not available
> - Codex then falls back to its `image_gen.py` script, which needs
`OPENAI_API_KEY` in the shell, so the agent asked the user for a second
key
> - This pull request keeps Codex's built-in image tool on, so it uses
the agent's existing provider auth, and lets the sandbox read only the
folder where Codex saves the images
> - The benefit is that a Codex agent can make images without a second
key, and the provider key still does not reach the shell

## Linked Issues or Issue Description

**What happened?**
Manual onboarding test on Paperclip Cloud staging (Codex API path):
"Open AI requests another api key for image model even though it has an
active api key powering the agent."

**Steps to reproduce**
1. Create a company with a Codex agent that uses an OpenAI API key.
2. Ask the agent to generate an image.
3. The agent asks for another OpenAI API key.

**Expected behavior**
The agent uses the OpenAI API key that already powers it.

**Root cause**
`createIsolatedCodexAppServerArgs` passed `--disable image_generation`
and the thread config set `features.image_generation: false`. The pinned
Codex 0.160.0 binary has two image paths. Its own instructions say the
built-in `image_gen` tool "Does not require `OPENAI_API_KEY`". The
fallback CLI path "Requires `OPENAI_API_KEY`". The runner removes
`OPENAI_API_KEY` from the shell on purpose
(`codex-shell-environment.ts`), so the fallback can never work and the
agent asks the user.

## What Changed

- `codex-security-config.ts`: remove `--disable image_generation` and
`features.image_generation: false`. Codex's built-in tool runs in the
trusted app-server with the agent's existing auth.
- `codex-security-config.ts`: in the workspace and plan permission
profiles, grant **read** on `CODEX_HOME/generated_images` only. Codex
saves images there and tells the agent to copy them into the workspace.
The rest of `CODEX_HOME` (for example `auth.json`) stays denied.
Preconfigured-home mode is unchanged (it does not deny `CODEX_HOME`).
- `eval-gateway-runtime.ts`: set `image_generation = false` in the
controller-gateway Codex config. That gateway admits no hosted tools
(`unqualified_hosted_tool`), so qualified evals keep the earlier
behavior.
- Tests: two new N-12 tests, and updates to the tests that asserted the
old disable flag.

## Verification

Red on `master` (819420a60a), same test file before the source change:

```
     × N-12: lets an API-key Codex agent generate images with its existing provider key instead of asking for another 5ms
     × N-12: the pinned Codex binary keeps built-in image generation enabled under the isolated launch 4400ms
⎯⎯⎯⎯⎯⎯⎯ Failed Tests 2 ⎯⎯⎯⎯⎯⎯⎯
 FAIL  src/drivers/codex/codex-security-config.test.ts > Codex security configuration > N-12: lets an API-key Codex agent generate images with its existing provider key instead of asking for another
AssertionError: expected [ '-c', …(22) ] to not include 'image_generation'
    378|     expect(args).not.toContain("image_generation");
 FAIL  src/drivers/codex/codex-security-config.test.ts > Codex security configuration > N-12: the pinned Codex binary keeps built-in image generation enabled under the isolated launch
AssertionError: expected 'image_generation                     …' to match /\strue\s*$/
+ Received:
"image_generation                         stable             false"
      Tests  2 failed | 17 skipped (19)
```

Green after the fix:

```
      Tests  2 passed | 17 skipped (19)
```

Neighbouring suites (`src/drivers/codex`,
`src/cli/eval-gateway-runtime.test.ts`, `src/provider-events.test.ts`):

```
 Test Files  25 passed (25)
      Tests  429 passed (429)
```

Real sandbox check with the pinned Codex 0.160.0 binary (`codex sandbox`
with the generated permission profile, macOS seatbelt):

```
generated_images/t1/img.png status=0 "PNGDATA"     # agent can read the saved image
auth.json status=1 "cat: ...: Operation not permitted"  # rest of CODEX_HOME stays denied
cp status=0                                          # agent can copy the image into the workspace
```

- `pnpm exec tsc --noEmit -p packages/paperclip-runner`: no errors in
changed files (only pre-existing errors from the unbuilt
`@paperclipai/paperclip-eval-kernel` package).
- `pnpm verify` exits 2 (changes outside resolved test graphs); required
CI supplies the broad coverage.
- **Test scope.** The red/green tests assert the launch configuration:
the disable flag, the thread config, the sandbox grant, and the
effective `image_generation` state that the pinned Codex binary reports.
They do not drive a model. So they do not directly observe the reported
"asks for a second key" behavior. The link from the flag to that
behavior comes from the pinned Codex 0.160.0 bundled instructions: the
built-in `image_gen` tool "Does not require `OPENAI_API_KEY`", and the
fallback `scripts/image_gen.py` CLI "Requires `OPENAI_API_KEY`". The
runner removes `OPENAI_API_KEY` from the shell.
- Not run: a live paid image generation with an API-key Codex agent.
There is no Codex staging company.

## Risks

- Image generation uses the agent's OpenAI account. Images cost money on
API-key billing. This is the expected behavior when the user asks for an
image.
- The agent can read images it (or an earlier thread of the same Codex
home) generated. It cannot read other files in `CODEX_HOME`.
- Codex's built-in `view_image` tool was already enabled, so the trusted
process already reads image files for the model. This change does not
add a new kind of file access to the provider.
- If a future Codex release changes the image save folder, the agent can
still see the image inline but cannot copy it. The N-12 binary test pins
the feature state for the current Codex version.

### Security policy change (needs maintainer sign-off)

**Why it was disabled.** #12364 ("isolate Codex security configuration")
disabled host apps, plugins, memories, multi-agent behavior, and image
generation as one group. Its goal was a closed launch configuration that
does not depend on ambient Codex defaults. The PR records no specific
threat for image generation. This PR keeps the other features disabled.

**Why re-enabling it is safe.**
- The tool is a hosted tool. It runs at OpenAI inside the same model
request that the trusted app-server already makes. It adds no new
network endpoint, process, or shell capability.
- No credential moves. `OPENAI_API_KEY` stays out of the shell, argv,
and serialized config (the N-12 test asserts this).
- The new sandbox grant is read-only and covers only
`CODEX_HOME/generated_images`. The rest of `CODEX_HOME` (`auth.json`,
config, sessions) stays denied. The real `codex sandbox` check above
confirms this. In plan mode the grant is also read-only.
- Codex's `view_image` tool was already enabled. So the trusted process
already sends local image content to the provider.
- Controller-gateway evals keep the tool off (`image_generation =
false`), because that gateway admits no hosted tools.

**Credentials and billing.**
- API-key path: the hosted tool uses the agent's existing OpenAI API key
through the app-server. OpenAI bills image generation to that API
account at image-model rates.
- ChatGPT-subscription path: the tool uses the agent's existing ChatGPT
sign-in. Use counts against that ChatGPT plan's limits. There is no
separate API bill.
- These two points follow from how Codex sends hosted tools in the
provider request. I did not observe them in a live paid run.
- Open question: Paperclip cost tracking uses provider token usage. I
did not confirm that image-generation charges appear in Paperclip's
per-agent cost and budget totals. If they do not, budget hard-stops
could undercount image spend.

## Model Used

- Claude Opus 5.5 (`claude-opus-5-5`), Anthropic, via Claude Code with
tool use (shell, file edits, test execution).

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have searched GitHub for duplicate or related PRs and linked
them above
- [x] I have either (a) linked existing issues with `Fixes: #` / `Closes
#` / `Refs #` OR (b) described the issue in-PR following the relevant
issue template
- [x] I have not referenced internal/instance-local Paperclip issues or
links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip`
URLs)
- [x] My branch name describes the change (e.g. `docs/...`, `fix/...`)
and contains no internal Paperclip ticket id or instance-derived details
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [ ] All Paperclip CI gates are green
- [ ] Greptile is 5/5 with no open P2s, recommendations, or follow-ups
- [x] I will address all Greptile and reviewer comments before
requesting merge

🤖 Generated with [Claude Code](https://claude.com/claude-code)

---------

Co-authored-by: Claude Opus 5.5 <noreply@anthropic.com>
2026-11-06 11:48:54 -06:00
DottaandClaude Opus 5.5 a0cba70f18 fix(runner): continue restart-interrupted ACPX and OpenCode turns (#19501)
## Thinking Path

> - Paperclip is the open source app people use to manage AI agents for
work
> - Native runs keep their provider conversation when the control plane
restarts
> - A local Codex turn lost in a restart already continues once in the
same conversation (#15297)
> - ACPX (Claude and the other ACPX profiles) and OpenCode took a
different path: the runner closed the lost turn as a provider failure
> - The task then blocked with "Provider turn failed", and the user's
queued follow-up stayed unread
> - A restart must not need a user action when continuing is safe
> - This pull request gives ACPX and OpenCode the same recoverable
restart-loss cause and the same single continuation as Codex
> - The benefit is that work interrupted by a controller restart
finishes on its own

## Linked Issues or Issue Description

Refs #15297 (Codex continuation), #19399 (restart-interrupted turn
hook), #19471 (harness fix used for the live reruns).

**What happened?**

After a control-plane restart during an active native ACPX Claude turn,
the task ended `blocked` with `native_provider_terminal_failed: Provider
turn failed`. The queued follow-up comment was not consumed. No
continuation started. The next run then failed with
`native_session_cleanup_quarantined`. A native OpenCode run killed
mid-turn ended the same way (`turn.failed` with `error: null`).

**Expected behavior**

When the old provider process is gone and the conversation can be
restored, continue the task once in the same conversation. When that is
not safe, record an honest restart cause instead of a generic provider
failure.

**Steps to reproduce**

1. Start a native ACPX Claude task on a local runner.
2. Submit a follow-up comment while the turn is active.
3. Restart the control plane while the turn is still running.
4. Run `pnpm test:e2e:runner -- --max-automatic-retries 0 --id
everyday-workflows.runner-acpx-claude.local.recover-controller`.

**Root cause**

- `runner-core/src/acpx_provider_backend.rs`
`restore_session_if_needed`: a saved `turn_active` state always closed
the session. It recorded `turn.failed` with only a top-level `code:
acpx_active_turn_recovery_closed` and no `error` object. It also emitted
`run.terminal`.
- The runnerd transport forwards only `error`, so the controller saw
`error: null` and reported generic `provider_turn_failed`.
- `runner-core/src/provider_backend.rs` gave the recoverable
`provider_turn_lost_on_restore` cause only to `provider_label ==
"codex"`. OpenCode shares that backend.
- `nativeRestartInterruptedTurnId` accepted only `codex_app_server`. The
runtime continuation gate accepted only `provider.kind === "codex"`.
- Two follow-on defects appeared once the continuation ran live:
- The restored ACPX provider rejected the controller's result for the
lost turn's open semantic call. That call never settled.
- The restored provider's MCP request ids restart. The controller keys
semantic calls by `hash(runId, callId)`. The continuation's first
Paperclip tool call reused an earlier id, was treated as already
answered, and hung. After the result was accepted,
`runner_settlement_incomplete` failed the run.

## What Changed

- ACPX runner: for an active turn lost to a runner restart, prove that
the original provider lifetime lost its fence quorum. Then restore the
same conversation and record `turn.failed` with `error: { code:
"provider_turn_lost_on_restore", recoverable: true }`. Keep the run open
for the controller's continuation. An accepted result, an unanswered
runtime request, or an active goal keeps the old close behavior. So do
an unproven lifetime fence and a failed restore.
- ACPX runner fallback close: add a structured `error`
(`acpx_active_turn_recovery_closed`, not recoverable, with an honest
restart message), so the cause survives the transport.
- ACPX runner: track open semantic calls durably. On restore, retire the
lost turn's open calls. Acknowledge their controller results as
`retired` and do not send them to the new provider.
- ACPX sidecar: when the sidecar restores an existing session, prefix
forwarded semantic `callId`s with a per-process namespace
(`r<hex>:<id>`). Fresh sessions keep raw ids.
- OpenCode runner: give OpenCode the same recoverable cause and open run
as Codex (`restart_lost_turn_is_continuable`). Cursor Cloud stays
excluded because its agent runs remotely.
- Runner TS: `nativeRestartInterruptedTurnId` accepts `acpx_runtime` and
`opencode_server`. The runtime continuation gate accepts `acpx` and
`opencode`. All other Codex safety rules are unchanged: one
continuation, admitted dead-runner restart only, no compaction, goal,
semantic result, or pending runtime request.
- Docs: `doc/execution-semantics.md` and `doc/run-log-events.md`.

## Verification

Red, then green, at each layer:

- Rust `tests/acpx_warm_attachment.rs`
`restores_the_conversation_after_losing_an_active_turn_to_a_runner_restart`.
Red: status `closed`. Then red on the lost call's result: "tool result
does not match a pending provider call". Green after the fix.
- Rust `tests/native_provider_backend.rs`
`restart_lost_opencode_turn_records_a_recoverable_cause`, with the
qualified OpenCode launch fixture. Red: `error` was `null`. Green after
the fix.
- Rust unit test
`restart_lost_turns_continue_only_for_locally_restored_providers`
(Codex, OpenCode yes; Cursor Cloud no).
- TS `native-session-runtime.test.ts` "continues a restart-lost
acpx_runtime / opencode_server turn once". Red:
`NativeProviderTerminalFailure provider_turn_lost_on_restore`. Green:
exactly one continuation, which does not resend the task.
- TS `acpx-runtime-sidecar.test.ts`: a restored provider's call ids are
namespaced and resolve.
- Server `native-runner-restart-recovery.integration.test.ts`: a
checkpointed `acpx_runtime` or `opencode_server` restart interruption is
claimed as `resume_dead_runner`. Red without the driver gate. Green with
it.
- Two `native_provider_backend.rs` tests asserted the old
close-on-restore result. They now assert the new contract. Their real
invariant still holds: the delivered response is never replayed.

Suites run locally on the final revision:

- runner-core: `cargo test --no-fail-fast acpx`, `--test
native_provider_backend` (38), `--test acpx_warm_attachment`, `--test
codex_provider restart_lost`
- runner TS: `native-session-runtime`, `runnerd-restart-continuation`,
Codex driver recovery, contracts, and `acpx-runtime-sidecar` (all pass)
- server: `native-runner-restart-recovery.integration.test.ts` (80
passed)
- `pnpm --filter "@paperclipai/paperclip-runner..." build` (all
generated-contract checks pass)

Live runner E2E (local, real Claude via ACPX, macOS arm64):

- `everyday-workflows.runner-acpx-claude.local.recover-controller`: PASS
twice in a row on the final runner code. The restart crossed an active
turn. The task finished `done`, the queued follow-up was consumed, the
ZIP download was verified, and there were no failure codes.
- `stock-harness.runner-acpx-claude.local.continuity-restart`
regression: PASS.
- Earlier failing reruns are kept as evidence of the follow-on defects:
one harness `kill EPERM` while stopping the server (unrelated to this
change), one hang on the colliding call id, and one
`runner_settlement_incomplete`.

## Risks

- A continuation can run more work in the restored conversation. Its
prompt requires inspecting state before repeating an uncertain action,
as for Codex.
- The ACPX restore waits up to 5 s for the original provider lifetime
fence before it falls back to the old close.
- The ACPX provider state file gains two fields with defaults. Older
saved states still load. A downgraded runner cannot read state that a
newer runner wrote with these fields.
- Restored ACPX sessions now forward prefixed call ids. Only fresh
sessions keep raw ids. Live proof covers Claude. Codex-ACP, Pi, Cursor,
Copilot, Grok, Kimi, and Antigravity share this path, but this PR proves
them only by unit tests and code review.
- OpenCode is covered by the runner fixture and gate tests. The live
OpenCode restart-chaos cell was not rerun here.
- `runner-core`
`unconfirmed_suspension_state_becomes_recoverable_only_after_cleanup_and_suspend`
is flaky when run in parallel. It also fails with the new path disabled,
so it predates this change.

## Model Used

- Anthropic Claude Opus 5.5 (`claude-opus-5-5`) in Claude Code, with
tool use, code execution, and extended reasoning.

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have searched GitHub for duplicate or related PRs and linked
them above
- [x] I have either (a) linked existing issues with `Fixes: #` / `Closes
#` / `Refs #` OR (b) described the issue in-PR following the relevant
issue template
- [x] I have not referenced internal/instance-local Paperclip issues or
links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip`
URLs)
- [x] My branch name describes the change (e.g. `docs/...`, `fix/...`)
and contains no internal Paperclip ticket id or instance-derived details
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [x] All Paperclip CI gates are green
- [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups
- [x] I will address all Greptile and reviewer comments before
requesting merge

🤖 Generated with [Claude Code](https://claude.com/claude-code)

---------

Co-authored-by: Claude Opus 5.5 <noreply@anthropic.com>
2026-11-06 11:39:29 -06:00
Nicky LeachandClaude Opus 5.5 ff1d1dea5d fix(tools): reject non-tool connections before any write (#19492)
## Thinking Path

> - Paperclip is the open source app people use to manage AI agents for
work
> - Apps and tools connect to Paperclip through tool connections
> - `POST /api/companies/:companyId/tools/connections` creates a tool
connection through `createConnection`
> - The request schema accepts a channel purpose and the chat and voice
transports, but `createConnection` cannot store them
> - The database then rejects the row, so the caller gets a 500 and a
stray tool application stays behind
> - This pull request rejects those requests with a 422 before any
write, and stores `config` as `transportConfig` when the caller leaves
`transportConfig` out
> - The benefit is a clear error, no leftover rows, and consistent
connection rows

## Linked Issues or Issue Description

No issue exists. The new test typecheck in #18739 found this problem.
#18739 listed it as a possible product problem and did not change it.

**What happened?**

1. `createConnection` never writes `input.connectionPurpose`, so every
row gets the database default `tool`.
2. The schema allows `transport: "chat_sdk"` and `transport: "voice"`.
The database check `tool_connections_channel_transport_check` does not
allow these transports on a `tool` row.
3. No error mapping exists for a check violation, so the route returns
500.
4. When the request has no `applicationId`, the service inserts a
`tool_applications` row first, outside the connection transaction. That
row stays after the failure.
5. The schema gave `transportConfig` a default of `{}`. The service
stores `input.transportConfig ?? config`, so it stored `{}` instead of a
copy of `config`.

**Expected behavior**

The route returns 422 for a purpose or transport that it cannot create,
and writes no rows. When the request leaves `transportConfig` out, the
row stores `config` there.

**Steps to reproduce**

1. Send `POST /api/companies/:companyId/tools/connections` with `{
"name": "x", "transport": "chat_sdk" }`.
2. See the 500 response.
3. See the new `tool_applications` row for the company.

## What Changed

- `server/src/services/tool-access.ts`: `createConnection` rejects a
purpose other than `tool`, and the `chat_sdk` and `voice` transports,
with 422. The check runs before any lookup or write. Channel connections
still come from their own services.
- `packages/shared/src/validators/tool-access.ts`: `transportConfig` is
optional and has no default. The update schema already removed defaults,
so it does not change.
- `server/src/__tests__/tool-access-service.test.ts`: added tests for
the three rejected inputs (no rows written), and for a request that
sends only `config`.

## Verification

- `pnpm exec vitest run server/src/__tests__/tool-access-service.test.ts
server/src/__tests__/generic-mcp-connection.test.ts
server/src/__tests__/tool-connection-health-work.test.ts
server/src/__tests__/openapi-routes.test.ts
server/src/__tests__/tool-access-routes.test.ts
packages/shared/src/validators`: 27 files, 995 tests pass.
- `cd server && pnpm typecheck`: passes. This includes the source layers
and the three test-tree shards.
- Not run locally: the full `pnpm test:run`, the root `pnpm build`, and
the UI typecheck. Required CI covers them.

## Risks

- Low risk. A client that sends a channel purpose or a chat or voice
transport to this route now gets 422 instead of 500. The request failed
before this change too.
- A client that sends only `config` now gets the same value in
`transportConfig`. Every reader checks `config` first, so this changes
no behavior.
- The OpenAPI output for this body no longer shows a default for
`transportConfig`.

## Model Used

- Claude Opus 5.5 (`claude-opus-5-5`) in Claude Code, with tool use
(shell, file edits) and extended thinking.

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have searched GitHub for duplicate or related PRs and linked
them above
- [x] I have either (a) linked existing issues with `Fixes: #` / `Closes
#` / `Refs #` OR (b) described the issue in-PR following the relevant
issue template
- [x] I have not referenced internal/instance-local Paperclip issues or
links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip`
URLs)
- [x] My branch name describes the change (e.g. `docs/...`, `fix/...`)
and contains no internal Paperclip ticket id or instance-derived details
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [ ] All Paperclip CI gates are green
- [ ] Greptile is 5/5 with no open P2s, recommendations, or follow-ups
- [ ] I will address all Greptile and reviewer comments before
requesting merge

🤖 Generated with [Claude Code](https://claude.com/claude-code)

Co-authored-by: Claude Opus 5.5 <noreply@anthropic.com>
2026-11-06 17:30:24 +00:00
DottaandPaperclip 0d03610d2f fix(opencode): export bounded tool argument diagnostics (#18699)
## Thinking Path

> - Paperclip manages work across agent runtimes.
> - Company observability sends allowed records to the operator's OTLP
receiver.
> - Native OpenCode exports tool results but omits submitted argument
diagnostics.
> - Exact argument values are excluded by the current capture policy.
> - Safe type information can distinguish malformed envelopes without
copying private values.
> - This change exports a fixed diagnostic shape from authenticated
dispatch and schema-rejection events.
> - Operators can compare rejected and accepted calls under the existing
capture controls.

## Linked Issues or Issue Description

**What happened?**

OpenCode tool spans omit argument diagnostics. The exporter reads native
tool events. The authenticated MCP boundary has the submitted arguments,
but its dispatch item events do not create tool spans. Calls rejected by
its schema check do not emit dispatch items.

**Expected behavior**

With tool details and tool content enabled, Paperclip tool spans include
the method, diagnostic schema version and allowed argument field types.
Exact values and arbitrary field names stay excluded.

**Steps to reproduce**

1. Configure a company OTLP receiver and enable native OpenCode export.
2. Enable tool details and tool content.
3. Submit a rejected Paperclip tool call and then a valid call.
4. Inspect the input diagnostics and outcome of each span.

Related work: #17989 proposes metadata-only native export. #18098 added
the normalized content exporter. This change repairs argument
diagnostics in that exporter.

## What Changed

- Export `paperclip.opencode.tool-diagnostics.v1` as `braintrust.input`
for authenticated Paperclip tool calls.
- Include `tools/call`, the argument type and types for a fixed list of
envelope fields.
- Use dispatch IDs for Paperclip tool spans. Keep separately named
`opencode tool ...` provider records for failures before dispatch. Mark
each span source.
- Preserve schema-rejected calls as failed items without invoking the
controller handler. Keep authentication and the closed tool catalog.
- Bound schema-rejection error text in stored events and transcripts
with the existing redaction and 8 KiB limit. Keep the provider response
unchanged.
- Preserve the controller opt-in, tool-detail and tool-content switches,
redaction, limits and run identity.
- Add MCP-to-receiver regression coverage and update the capture policy
and capability maps.

### Hypothesis and thesis for a fix

The exporter drops the dispatch diagnostic signal. Raw input omission is
intentional. The repair belongs in the OpenCode driver and exporter.
Shared protocol, tool permissions and task completion stay unchanged.

The regression sends schema-rejected, handler-rejected and valid
argument envelopes through a fixture OpenCode subprocess and the
authenticated MCP bridge. It checks the downstream rejection and
receipt, completion event and actual local OTLP request. The baseline
has no dispatch spans. The candidate has separate spans with safe type
diagnostics. Two warm runs and disabled capture use the same path.

Source: [OpenCode diagnostic
pattern](https://www.braintrust.dev/app/Paperclip/p/Paperclip%20Staging/patterns/f172172e-9c65-453f-bb3a-7c6ba4f5a400).

## Verification

- Baseline: `a92f616cd0a457c8ba85d994b24e1f92c2e4d1de`. The new
integration regression fails because tool spans are absent. The same
regression passes with this change.
- Exporter and MCP bridge suites: 37 tests pass. Three final driver
controls pass. Ten selected controls also passed before the final
provider-record repair. Runner TypeScript typecheck and build pass after
the review repair.
- The review regression failed with two spans before the repair. It
passes with three spans after the repair. Unauthenticated and unassigned
calls do not reach the rejection observer. A broken observer cannot
change the schema rejection.
- The full OpenCode/exporter/MCP run passes 94 tests and fails one
existing final-answer selection test. The same failure occurs in an
untouched baseline checkout. It is not claimed as a pass.
- A further filtered run reached the default five-second timeout in two
existing continuation tests during concurrent repository checks. All
five selected dispatch, warm-session and continuation controls pass with
a 15-second test deadline. The earlier timeouts remain recorded.
- `node scripts/check-maps.mjs` and `git diff --check` pass.
- Runner TypeScript checks and build pass. Full repository typecheck and
build stop at Rust because `cargo` is not installed. The full repository
test command was stopped before workspace handoff. No full-suite pass is
claimed. Local source commits:
`c48a8af1c186e415c802fa0ac95209b16b4a3122` `6744991f6`, and `a8ccf4693`.
The remote branch is based on newer master
`4814d1ab691c176170510a93a175dafdc9e021c7`. All initial eight changed
files match between those bases before the patch.
- The integration provider and controller are fixtures. The OTLP
receiver is a real local HTTP server. A separate real OpenCode 1.18.34
probe opened a session. The remote free model returned `Free usage limit
reached`. No tool call or receipt was produced. No live recovery is
claimed.

- Review follow-up: a real MCP request with 12,000 invalid array
elements produced a 264,908-character event error before the repair. The
same regression now stores 8,192 characters in both events and
transcript. The MCP error receipt stays unchanged and no handler runs.
All 37 exporter/MCP tests and 12 selected driver/exporter/MCP controls
pass. Runner TypeScript checks and build pass. Local follow-up commit:
`64d4fa583`.
- The previous remote head passed Runner, typecheck, build and E2E. Its
unchanged attention-retention shard failed twice with 15-second
timeouts, then cleanup deadlock and duplicate fixture IDs. Both affected
retention suites passed all 70 tests locally unchanged. The new head
needs fresh CI and review; no full CI pass is claimed.

- Current-master qualification (2026-11-06, merge `2959ecdb8d`):
normally merge master `53645a0104`, including the existing test-only
retention-fixture repair from #18774 reused by #18770. Keep the OpenCode
diagnostics feature and upstream durable MCP and completion-feedback
behavior. No test deadline or assertion changed. The three old CI
timeouts did not reproduce locally: the four completed-blocker-history
cases passed on the old head in 29.52 seconds, then passed on the merged
head in 13.23 seconds. The fixture rollback/provenance regression also
passed. All 116 exporter, MCP bridge and OpenCode driver fixture tests
passed. Runner TypeScript checks and both TypeScript compilation targets
passed; ACPX profiles match the release manifest and protocol-contract
checks pass. These checks use local PostgreSQL, HTTP and process
fixtures. No hosted provider call or deployed recovery is claimed. Fresh
CI and review are pending for this merge.

- Map-scope review follow-up (`61e662e179`): remove only the inherited
diagnostics paragraphs from the company capability maps. This change
adds logging detail within an existing capability. `node
scripts/check-maps.mjs` and `git diff --check` pass. Production and test
inputs are unchanged from the qualified merge; fresh CI and review are
pending for the final head.

- Test compiler follow-up (`6675b46377`): reproduce CI TS2722 with `tsc
-p packages/paperclip-runner/tsconfig.test.json --noEmit`. The harness
contract makes transcript retrieval optional. The OpenCode bounds
regression now fails explicitly if that capability is absent, then
inspects the narrowed method. The same complete Runner test compiler
project passes, and the actual local schema-rejection fixture passes
with all receipt and 8 KiB assertions retained. Production inputs are
unchanged. Fresh final-head CI and review are pending.

- Final-head qualification: `6675b4637743aa269e5214756b158e1e0a4561a5`
passes all 56 applicable CI checks (three skipped, one neutral review).
[CI
result](https://github.com/paperclipai/paperclip/actions/runs/42253119577).
Greptile gives 5/5 with no open findings. Hosted task recovery remains
pending verified rollout.

## Risks

- Authenticated spans use dispatch IDs. Provider records use separate
names and a source attribute. Consumers must choose the source they need
to avoid counting two observations of the same tool action.
- Safe types cannot reconstruct nested arguments or explain every
value-level validation failure.
- Export remains best effort and bounded. Lost native frames no longer
remove dispatch diagnostics, but abrupt process termination can still
lose a turn.
- Full local Rust checks and a deployed product journey are not yet
verified. The pull request is unmerged and not deployed.

## Model Used

OpenAI GPT-6 through Codex, with reasoning, tool use and code execution.
The exact runtime variant and context-window size are not exposed to
this session.

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have searched GitHub for duplicate or related PRs and linked
them above
- [x] I have either (a) linked existing issues with `Fixes: #` / `Closes
#` / `Refs #` OR (b) described the issue in-PR following the relevant
issue template
- [x] I have not referenced internal/instance-local Paperclip issues or
links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip`
URLs)
- [x] My branch name describes the change (e.g. `docs/...`, `fix/...`)
and contains no internal Paperclip ticket id or instance-derived details
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [x] All Paperclip CI gates are green
- [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups
- [x] I will address all Greptile and reviewer comments before
requesting merge

---------

Co-authored-by: Paperclip <noreply@paperclip.ing>
2026-11-06 11:01:25 -06:00
DottaandPaperclip c6573962f8 fix(workspaces): recover full sandboxes through read-only export (#19465)
## Thinking Path

> - Paperclip preserves agent work across failed runs and server
restarts.
> - A remote workspace must have a durable save before its source can be
released.
> - Portable capture normally writes a Git mirror and a full archive
inside the sandbox.
> - A full sandbox can prevent capture before the provider's streaming
download starts.
> - Retrying that write cannot create the required free space.
> - This change transfers a checked standalone source and seals its
archive on the controller.
> - The source remains retained unless the existing durable save
completes.

## Linked Issues or Issue Description

Related: #18644 reduced temporary capture space. #18172 added the
provider's disk-free directory transfer. This repair connects portable
capture to that transfer when the archive itself cannot be created.

**What happened?**

Workspace capture returns `remote_workspace_sandbox_disk_full` after
provider work has finished. File recovery repeats the same sandbox
write.

**Expected behavior**

Recover a stable standalone workspace without requiring another full
archive on the source disk. Preserve staged changes, untracked work,
confined links and the original source.

**Steps to reproduce**

1. Create a standalone Git repository with a commit, staged changes and
an untracked result.
2. Use the existing real-command transport fixture. Inject ENOSPC into
the sandbox helper write or archive write.
3. Run portable capture. Before this change it rejects the helper
failure.
4. With the change, restore the saved archive after removing the fixture
source. Check the commit, staged content, untracked result and Git
connectivity.

## What Changed

- Attempt one controller-side capture after an exact sandbox disk-full
failure.
- Read a source inventory without installing a helper. Use the existing
provider bulk transfer with confined links and runtime exclusions.
- Compare the transferred inventory with source fingerprints before and
after sealing.
- Reject copied Git pointers, alternates and administrative symlinks.
Parse config as data without includes; allow only portable keys before
controller Git normalization.
- Preserve socket exclusions. Retain the source and remove incomplete
controller staging after failure.
- Update execution semantics and focused regression coverage. No
database migration or new execution authority.

## Verification

- TDD red on base `2f35eb1080`: the new full-sandbox test failed with
`remote_workspace_sandbox_disk_full` before production edits.
- Green: 202 transport and archive tests passed before the additional
Git configuration guards. At head `8541086cb5`, all 116 transport tests
and the PostgreSQL durability acceptance pass. The final `e24e173ec9`
exclusion guard passes those 116 cases plus its new Git-history
regression across the full run and focused rerun. Environment: macOS
arm64, Node 26.4.0; real Node/Git commands and filesystem transfer.
- Review regressions were also red before their fixes: an internal Git
config symlink bypassed the check, and `core.attributesFile` could
select a controller path. Git administrative symlinks and nonportable
config now fail before normalization. The focused safety selection
passes 11 cases.
- Cases cover helper and archive ENOSPC, commit/staged/untracked
continuity after source removal, confined links, sockets, changed
source, corrupt or extra copied files, unsafe Git metadata, retained
diagnostic text and failed download.
- Real PostgreSQL acceptance passes: normal workspace save recovers one
sandbox ENOSPC, commits the encrypted snapshot, clears its writer, loses
the original allocation, then independently reloads the saved result
twice. The first acceptance attempt used an incorrect expected status
(`available`); the documented state is `committed`. No production change
was needed for that correction.
- Review regressions for untracked Python/Node environments and
excessive Git roots failed before their fixes. Dependency exclusions now
match normal capture. Controller parsing starts only after
whole-tree/repository budgets and layout checks; refspec/settings
budgets and a shared two-minute verification/normalization deadline
bound further work. The excessive-root test verifies zero Git
subprocesses.
- Real provider-boundary red/green: Daytona direct tar and
capacity-fallback PTY transfers first dropped `._result.txt`. The new
optional mapping contract preserves all user names and excludes only
current transfer scratch. Kubernetes implements the same contract.
Explicit caller exclusions and archive validation remain in force.
- Standalone Linux qualification on Node 24.22.2/Debian bookworm: fresh
shared/SDK build; Daytona and Kubernetes typecheck and build; Daytona
file-sync/capacity/diagnostics 68/68 pass; Kubernetes file-sync 31/31
pass, including the actual `/proc` case. Qualification was refreshed
again on the final `be6f7feacc` source tree: current shared/SDK rebuilt;
all 815 staged source/config/manifest hashes match the delivered tree
before and after testing. An initial container run as root bypassed a
read-only file test; the same source passes as uid 1000. Installing zstd
enabled eight initially skipped cases.
- A further review regression proved `.git/pyvenv.cfg` could exclude Git
history as a dependency. The inventory now handles `.git` before
dependency filtering, matching normal capture. The full capture/restore
test verifies the original commit and saved work. The first green
attempt incorrectly compared command-result object identity; correcting
the test to compare stdout passed with no production change.
- Further red/green regressions cover read-only private-copy cleanup, a
regular file replaced by a FIFO before open, case aliases of Git
administrative metadata, and permission preservation under restrictive
umask. Nonblocking no-follow file handles verify identity before and
after reading. Cleanup changes only private controller directories.
Provider extraction preserves ordinary permissions, refuses special mode
bits before writing, and does not adopt source ownership, ACLs,
attributes or flags. Final macOS Daytona tests pass 65/65; the final
Linux qualification above was repeated on these exact provider sources.
- Focused strict TypeScript compilation of the inventory and archive
modules passes.
- The first sandboxed archive run failed three Unix socket fixtures with
EPERM. The permitted run outside that filesystem sandbox passed all
tests.
- Initial full local server typecheck could not resolve the unbuilt
Runner package and produced cascading errors. Exact-head `e24e173ec9` CI
typecheck, build, Runner and browser checks pass. That CI attempt failed
two server shards: the unchanged retained-cleanup backlog test timed out
at 15 seconds and passes locally unchanged; ten cache-reclaim fixture
oracles failed because directory fallback consumed their sealed-archive
counters/faults. Final commit `caed4e4f83` isolates the intended
unavailable-directory boundary while preserving archive counts, recovery
status, integrity and no-second-reclamation assertions. Those ten
failures reproduced locally before the fixture edit. The full affected
file passes 394/395; its sole other HTTP socket-hang-up case passes
unchanged in an isolated rerun. This is combined coverage of all 395
cases, not a single complete green run. The final branch integrates
master `53645a0104` at `98ea07225592930cbb0d18bcf250bc64f6bb13b4`,
preserving upstream workspace phase timings. After integration: 117
transport cases, the PostgreSQL durability acceptance, the existing
object-storage/timing regression, and 12 affected cache cases pass. The
expanded recovery file now has 421 cases. Final-head
`be6f7feacc45c1e32a26a2417e973f1e3752fd8d` CI passes all 55 applicable
checks (three skipped, one neutral review), including the expanded
recovery suite, typecheck, builds and Runner coverage. [CI
result](https://github.com/paperclipai/paperclip/actions/runs/42251345554).
- Provider exclusion regressions were red through four real Linux
transfer paths: Daytona direct archive, direct safe-link repair,
capacity PTY repair, and Kubernetes streaming. A root socket and nested
regular file share a basename; literal glob-character files/subtrees
also survive. Preserve mode now anchors tar exclusions as literal
root-relative paths and escapes `find -path` pruning. Default callers
keep glob semantics. Receipt-count regressions were also red before
correcting preserved-output counting. All 31 Kubernetes and 68 Daytona
tests, builds and typechecks pass on the final source with 815 matching
inputs.
- The final semantics documentation explicitly records special mode
bits, the stricter config allowlist (including innocuous unlisted keys),
and provider qualification limited to Daytona/Kubernetes; these address
the optional current-head review observations without broadening
controller Git authority.
- No Daytona credential is available in this session. Provider transfer
is a local filesystem boundary in these tests. Hosted task recovery and
rollout remain unverified.

## Risks

- Recovery reads the source repeatedly and transfers the standalone
tree. It can take longer than normal capture.
- Linked worktrees, initialized submodules, Git administrative symlinks,
nonportable Git configuration, special mode bits and alternate object
stores remain retained if the normal capture cannot finish. This
fallback does not follow their pointers onto the controller.
- A provider without usable directory export, a changed source, or
insufficient controller space cannot produce a receipt. The original
source stays retained.
- The server, SDK and affected provider plugins must be built from this
revision together. An older provider can fail inventory verification on
names it omits; it cannot publish an incomplete save. No merge,
publication or deployment is included.

## Model Used

OpenAI GPT-6 family through Codex, with reasoning, code editing, shell
tools and automated tests. The exact serving model ID and context window
are not exposed in this session.

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have searched GitHub for duplicate or related PRs and linked
them above
- [x] I have either (a) linked existing issues with `Fixes: #` / `Closes
#` / `Refs #` OR (b) described the issue in-PR following the relevant
issue template
- [x] I have not referenced internal/instance-local Paperclip issues or
links (only public GitHub references)
- [x] My branch name describes the change and contains no internal
Paperclip ticket id or instance-derived details
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [x] All Paperclip CI gates are green
- [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups
- [x] I will address all Greptile and reviewer comments before
requesting merge

---------

Co-authored-by: Paperclip <noreply@paperclip.ing>
2026-11-06 11:00:32 -06:00
Nicky LeachandClaude Opus 5.5 55ea9cfa1b fix(runner): match retained cleanup and Codex close types to their contracts (#19495)
## Thinking Path

> - Paperclip is the open source app people use to manage AI agents for
work
> - The Paperclip Runner runs native agent sessions, such as Codex,
behind typed contracts
> - #18839 started to typecheck the Runner tests, and it listed contract
types that do not match their runtime use
> - First, retained runnerd cleanup accepts any backend kind, but
cleanup works only when that kind is `"runner"`
> - Second, `CodexHarnessSession.close` makes its input optional, but
the `HarnessSession` contract requires a reason
> - This pull request narrows both types to match their contracts
> - The benefit is that the compiler now rejects a cleanup proof that
would silently release nothing

## Linked Issues or Issue Description

No issue exists. #18839 listed both items under its product questions
and did not change them.

**What existing behavior does this improve?**

1. `completeRetainedNativeSessionCleanup` builds its release key from
`proof.backend.kind`. The quarantine key comes from the backend
descriptor's `kind`, and every production backend uses `"runner"`. If
the two kinds differ, the function returns 0 and the quarantine stays.
`RetainedRunnerdMaintenanceInput` and `RetainedRunnerdCleanupProof`
typed `backend.kind` as any string.
2. `HarnessSession.close` takes `{ reason: string; force?: boolean }`.
`CodexHarnessSession.close` took `input?: { reason: string }`.

**Current behavior**

The only production caller passes `backend: { kind: "runner", name:
"codex_app_server" }`. All production `close` calls pass a reason. So
nothing fails today.

**Proposed behavior**

The types state the same rules as the contracts.

**Reason and benefit**

A future caller that passes another kind gets a compile error, not a
quarantine that stays without notice.

**Breaking changes**

None for production callers. Both types are narrower, and every current
caller already passes the narrow values.

## What Changed

- `packages/paperclip-runner/src/live/runnerd-codex-transport.ts`:
`backend.kind` is `"runner"` in `RetainedRunnerdMaintenanceInput` and
`RetainedRunnerdCleanupProof`. `name` stays a string.
-
`packages/paperclip-runner/src/drivers/codex/codex-harness-session.ts`:
`close` takes `{ reason: string; force?: boolean }`, as the contract
does. The body still reads `input?.reason`, because a generated test
script calls `close()` with no arguments. Codex closes the same way with
or without `force`.

- `packages/paperclip-runner/src/live/runnerd-contract-types.test.ts`:
new type test. The Runner test typecheck fails if either type accepts
another backend kind, or if the Codex `close` parameters differ from the
contract. With the master types, this file has 4 type errors.

Not in this pull request: #18839 also listed that
`PrpEvent.normalizedSessionId` is required in the type but optional in
the event schemas. A separate pull request handles it in
`validatePrpEvent`.

## Verification

- `pnpm exec vitest run src/live/runnerd-contract-types.test.ts` (in
`packages/paperclip-runner`): passes 2 tests.
- `tsc --noEmit` passes in `packages/paperclip-runner` for
`tsconfig.json`, `tsconfig.surfaces.json`, `tsconfig.test.json` and
`tsconfig.surfaces.test.json`.
- `cd server && pnpm typecheck`: passes. The server builds the
maintenance input with the `"runner"` literal.
- In `packages/paperclip-runner`, after `pnpm run test:typescript:prep`:
`pnpm exec vitest run
src/live/runnerd-codex-transport-settlement.test.ts
src/drivers/codex/codex-protocol-cleanup.test.ts
src/drivers/codex/codex-app-server-driver.lifecycle.test.ts` passes 3
files and 43 tests.
- Not run locally: the full Runner `pnpm test` (including Rust tests)
and the root `pnpm build`. Required CI covers them.

## Risks

- Low risk. The change affects types only, plus one comment in the Codex
session. Runtime behavior does not change.

## Model Used

- Claude Opus 5.5 (`claude-opus-5-5`) in Claude Code, with tool use
(shell, file edits) and extended thinking.

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have searched GitHub for duplicate or related PRs and linked
them above
- [x] I have either (a) linked existing issues with `Fixes: #` / `Closes
#` / `Refs #` OR (b) described the issue in-PR following the relevant
issue template
- [x] I have not referenced internal/instance-local Paperclip issues or
links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip`
URLs)
- [x] My branch name describes the change (e.g. `docs/...`, `fix/...`)
and contains no internal Paperclip ticket id or instance-derived details
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [ ] All Paperclip CI gates are green
- [ ] Greptile is 5/5 with no open P2s, recommendations, or follow-ups
- [ ] I will address all Greptile and reviewer comments before
requesting merge

🤖 Generated with [Claude Code](https://claude.com/claude-code)

---------

Co-authored-by: Claude Opus 5.5 <noreply@anthropic.com>
2026-11-06 16:54:09 +00:00
Nicky LeachandClaude Opus 5.5 21a1e78852 feat(environments): add managed plugin environment rows (#19490)
## Thinking Path

> - Paperclip is the open source app people use to manage AI agents for
work
> - A managed instance gets its instance-level environments from the
`PAPERCLIP_MANAGED_CONFIG` document
> - That document cannot declare a plugin environment yet, so a managed
instance cannot get a plugin-provided environment without manual setup
> - The full change is split into three pull requests. This first one
adds the plugin environment rows and their write floor, and nothing
calls them yet
> - The second pull request lets the managed config declare plugin
entries and provisions them at boot. The third sets the instance default
once and advertises the new managed-config capability
> - The benefit is a smaller review for each step, and no instance
changes behavior until the last step lands

## Linked Issues or Issue Description

**Subsystem affected**
Server environments (managed-config environment provisioning,
environment routes) and the board UI's adapter Test target.

**Problem or motivation**
A managed instance cannot get a plugin environment from its managed
config. Company settings cannot create one either. So each managed
instance that needs one requires manual setup.

**Proposed solution**
Over three pull requests, let an `environments` entry in the managed
config declare `driver: "plugin"`. Boot then provisions one locked row
for each plugin entry, and makes one of them the instance default once
on new instances. This pull request adds only the row layer: create or
adopt a marked row, archive it, find it, and keep tenants from editing
it.

**Alternatives considered**
Manual setup on each instance, and a new control-plane endpoint. Both
need a step outside the deploy. The managed config already delivers the
sandbox entry.

**Roadmap alignment**
This extends the existing managed-config `environments` section, which
already provisions the managed sandbox. It adds no new product surface.

## What Changed

- New `server/src/services/managed-plugin-environments.ts`, used through
new `environmentService` methods (`ensureManagedPluginEnvironment`,
`archiveManagedPluginEnvironment`, `findManagedPluginEnvironment`):
- The ensure validates the driver config through
`normalizeEnvironmentConfig` and
`validatePluginEnvironmentDriverConfig`, the same path an
operator-created plugin environment takes.
- It marks the row `managedByPaperclip: true` and
`managedPluginEnvironment: "<pluginKey>:<driverKey>"`.
- It adopts an existing unmarked row for the same plugin and driver
instead of adding a second one, so a hand-made row keeps its agents.
- A row that already matches gets no write. Changes write activity log
entries.
- Archive sets an active marked row to `archived`. The next ensure
reactivates it.
- Migration `0437`: unique index
`environments_managed_plugin_environment_idx` on `metadata ->>
'managedPluginEnvironment'`. This is the only schema change of the three
pull requests. Snapshot `0432` is pruned to keep the five newest.
- `server/src/routes/environments.ts`:
`isPlatformProvisionedEnvironment` also covers the new marker (write
floor and redaction). `managedPluginEnvironment` is a reserved marker
key, so a client cannot stamp it on its own row. Nothing provisions
marked rows yet, so the marker-clear escape hatch stays open for them.
The next pull request refuses it while the managed config declares the
row's entry.
- `ui/src/lib/adapter-test-environment.ts`:
`resolveManagedSandboxEnvironmentId` requires `driver === "sandbox"`.
The plugin row also carries `managedByPaperclip`, so the old "not local"
check could take it for the managed sandbox.

## Verification

- `cd server && npx vitest run
src/__tests__/managed-plugin-environments.test.ts` (embedded Postgres):
- The ensure creates the marked row through the plugin validator. A
second ensure writes nothing and logs nothing.
- A hand-made row for the same plugin and driver is adopted. It keeps
its id and its agents.
  - Archive, then ensure, reactivates the row.
- The ensure refuses while the plugin has no running worker, and refuses
a name that another environment holds.
  - The unique index allows one row per marker.
- `npx vitest run src/__tests__/environment-routes.test.ts`: on a
cloud-managed instance, edit, env-var edit, status change and delete of
a marked plugin row are refused, including for instance admins. The
marker alone keeps the floor. A client cannot stamp the marker. The
marker clear is allowed.
- `npx vitest run src/__tests__/environment-service.test.ts`: passes.
- `cd ui && npx vitest run src/lib/adapter-test-environment.test.ts`:
the plugin row is never taken for the managed sandbox. Under
managed-sandbox-only, an agent on the sandbox tests in the sandbox, and
an agent on the plugin environment tests there.
- `pnpm --filter @paperclipai/server typecheck`, `pnpm --filter
@paperclipai/ui typecheck` and `pnpm --filter @paperclipai/db
check:migrations` pass.
- I did not run the full `pnpm test:run`, `pnpm -r typecheck` or `pnpm
build`. CI covers them. `pnpm verify` asks for broader verification
because of the migration.

## Risks

- Migration: one new partial unique index on a small table. No row
carries the marker before this change, so the index cannot fail on
existing data.
- No caller uses the new ensure yet, so no instance changes behavior.
- The UI change affects only lists that hold a non-sandbox row with
`managedByPaperclip`. Today that is only the local row, which the old
check already excluded.

> For core feature work, check [`ROADMAP.md`](ROADMAP.md) first and
discuss it in `#dev` before opening the PR. Feature PRs that overlap
with planned core work may need to be redirected — check the roadmap
first. See `CONTRIBUTING.md`.

## Model Used

- Claude Opus 5.5 (`claude-opus-5-5`), Anthropic, through Claude Code
with tool use (file edits, shell, test runs).

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have searched GitHub for duplicate or related PRs and linked
them above
- [x] I have either (a) linked existing issues with `Fixes: #` / `Closes
#` / `Refs #` OR (b) described the issue in-PR following the relevant
issue template
- [x] I have not referenced internal/instance-local Paperclip issues or
links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip`
URLs)
- [x] My branch name describes the change (e.g. `docs/...`, `fix/...`)
and contains no internal Paperclip ticket id or instance-derived details
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [ ] All Paperclip CI gates are green
- [ ] Greptile is 5/5 with no open P2s, recommendations, or follow-ups
- [x] I will address all Greptile and reviewer comments before
requesting merge

🤖 Generated with [Claude Code](https://claude.com/claude-code)

---------

Co-authored-by: Claude Opus 5.5 <noreply@anthropic.com>
2026-11-06 16:52:43 +00:00
DottaandClaude Opus 5.5 819420a60a fix(runner): give a cold OpenCode restore the 60 s admission budget (#19487)
## Thinking Path

> - Paperclip is the open source app people use to manage AI agents for
work
> - Native OpenCode agents run through a local runner. After a
control-plane restart, a replacement runner restores the saved provider
session.
> - The replacement runner does run preparation, `opencode serve`
startup and session resume inside one `run.attach` command.
> - The controller waits only 30 s for that command. A fresh start gets
separate bounds for `run.prepare` and `session.open` for the same work.
> - On a loaded host, a cold OpenCode restore took 10-38 s. When it took
more than 30 s, the continuation failed with
`runner_local_connect_failed: PRP command run.attach timed out`.
> - This pull request gives a cold OpenCode restore the same 60 s
cold-admission budget that Pi already uses.
> - The benefit is that a task that waited on a question across a
restart continues when the user answers, without a failed run.

## Linked Issues or Issue Description

**What happened?**
A native OpenCode agent asked a structured question. The control plane
restarted while the task waited. The user answered. The continuation run
failed with `native_session_recovery_failed: Error:
runner_local_connect_failed: PRP command run.attach timed out`, about 35
s after the runner transport connected. This happened in 1 of 2 runs of
the
`local-session-integrity.runner-opencode.local.structured-question-restart-resume`
runner E2E cell.

**Expected behavior**
The continuation restores the saved OpenCode session and finishes the
task. A restart must not cause a failed run.

**Steps to reproduce**
1. Run `pnpm test:e2e:runner -- --max-automatic-retries 0 --id
local-session-integrity.runner-opencode.local.structured-question-restart-resume`
on a host with other load.
2. The case asks a question, restarts Paperclip and answers the
question.
3. When the cold restore takes more than 30 s, the continuation run
fails at `run.attach`.

**Paperclip version or commit**
`master` at 0252421d5c.

Evidence from the runner spans (`runner.session.startup` of the
continuation run): 31.0 s (passed, close to the bound), 38.0 s (failed),
14.0 s and 10.1 s (passed). The first (fresh) runs took 4.9-13.7 s.

## What Changed

- `coldAdmissionTimeoutMs` returns 60 s for a cold OpenCode runner
process. Live adoption (a warm runner) keeps 30 s. Other providers keep
30 s, except Pi, which already had 60 s.
- The unit test for the cold admission budget covers the OpenCode cold
and live cases.

## Verification

- Red before the fix: `cd packages/paperclip-runner && npx vitest run
src/live/runnerd-codex-transport.test.ts -t "cold process admission
budget"` failed on `coldAdmissionTimeoutMs("opencode", undefined, true)`
(30000, expected 60000).
- Green after the fix: the same command passes.
- Live runner E2E on macOS arm64 with OpenRouter
(`openrouter/deepseek/deepseek-v4-flash-0731`), local runner, at the
fixed revision. Command: `pnpm test:e2e:runner --
--max-automatic-retries 0 --id
local-session-integrity.runner-opencode.local.structured-question-restart-resume`.
- Before the fix: 1 of 2 campaign runs failed at `run.attach` (restore
38.0 s). The passing run restored in 31.0 s. Two more local runs passed
(restore 14.0 s and 10.1 s).
- After the fix: 4 of 4 runs that reached the restart passed (restore
6.2 s, 11.3 s, 5.1 s and 11.8 s). One more run failed before the restart
because the model sent malformed `request_human_input` arguments. That
failure is not related to this change.
- Limitation: host load was lower during the after-fix runs, so no
restore took more than 30 s. The unit test proves the new bound.
- Other failures in `runnerd-codex-transport.test.ts` are unchanged on
`master` in this local environment (the fake Rust fixture binary is not
built locally). CI builds it.

## Risks

- Low risk. The change only makes a cold OpenCode admission wait longer
before it reports a failure. A runner that is really stuck now fails
after 60 s instead of 30 s.
- A fresh OpenCode start now shares one absolute 60 s deadline for
`session.open` and provider identity, the same as Pi. Fresh OpenCode
starts took 5-14 s.
- Inner bounds stay in place: the runner still bounds each provider
request (30 s) and OpenCode health checks (10 s).

## Model Used

- Claude Opus 5.5 (`claude-opus-5-5`), Anthropic, used through Claude
Code with tool use (shell, file edits). Reasoning mode was on.

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have searched GitHub for duplicate or related PRs and linked
them above
- [x] I have either (a) linked existing issues with `Fixes: #` / `Closes
#` / `Refs #` OR (b) described the issue in-PR following the relevant
issue template
- [x] I have not referenced internal/instance-local Paperclip issues or
links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip`
URLs)
- [x] My branch name describes the change (e.g. `docs/...`, `fix/...`)
and contains no internal Paperclip ticket id or instance-derived details
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [ ] All Paperclip CI gates are green
- [ ] Greptile is 5/5 with no open P2s, recommendations, or follow-ups
- [ ] I will address all Greptile and reviewer comments before
requesting merge

🤖 Generated with [Claude Code](https://claude.com/claude-code)

---------

Co-authored-by: Claude Opus 5.5 <noreply@anthropic.com>
2026-11-06 10:33:51 -06:00
Nicky LeachandClaude Opus 5.5 e1332b997f fix(plugins): align tool run context and interaction input types (#19493)
## Thinking Path

> - Paperclip is the open source app people use to manage AI agents for
work
> - Plugins add tools and issue-thread interactions through
`@paperclipai/plugin-sdk`
> - The SDK types are the public contract between the host and plugin
authors
> - Two parts of that contract do not match what the host does at
runtime
> - First, `ToolRunContext.projectId` says it is always a project UUID.
The tool gateway sends an empty string when a run has no project. The
direct tool route rejects such runs with 400
> - Second, three interaction helpers ask for the parsed output type, so
plugin authors must pass fields that the host fills in with defaults
> - This pull request makes the types and both tool paths agree with the
runtime
> - The benefit is that agents with no project can run plugin tools, and
plugin authors can omit the fields that have defaults

## Linked Issues or Issue Description

Fixes #3273

Related: #3274 removes the `projectId` requirement from the route. That
change alone is not enough today: the route now also looks up the
project to check its company, and that lookup needs a value. This pull
request also skips that lookup when the run has no project. It gives
plugins one value for "no project" on both tool paths.

The new test typecheck in #18739 and #18839 also listed both problems as
possible product problems.

## What Changed

- `server/src/routes/plugins.ts`: `POST /api/plugins/tools/execute`
accepts a `runContext.projectId` that is missing, `null`, or an empty
string. It passes an empty string to the plugin, the same value that the
tool gateway sends. It checks the project's company only when a project
ID is present. A `projectId` that is not a string returns 400.
- `server/src/routes/openapi.ts`: the request schema marks
`runContext.projectId` as optional and nullable.
- `packages/plugins/sdk/src/types.ts`:
- The `ToolRunContext.projectId` comment says the value is an empty
string when the run has no project.
- `suggestTasks`, `requestConfirmation` and
`requestCheckboxConfirmation` take `CreateIssueThreadInteractionInput`,
as `askUserQuestions` already does. The host parses this input with the
schema, so the defaults apply.
- `packages/plugins/examples/plugin-kitchen-sink-example/src/worker.ts`:
the example passes `undefined` instead of an empty project ID to
`issues.create`.
- `doc/plugins/PLUGIN_SPEC.md` (section 13.10): documents the empty
project ID.
- Tests:
- `server/src/__tests__/plugin-routes-authz.test.ts`: tests a run with
an empty, missing, or `null` project ID, which skips the project lookup.
Also tests that a project ID that is not a string returns 400.
- `packages/plugins/sdk/tests/testing-actions.test.ts`: removes the cast
that the output type required.

## Verification

- `pnpm exec vitest run server/src/__tests__/plugin-routes-authz.test.ts
server/src/__tests__/openapi-routes.test.ts
packages/plugins/sdk/tests/testing-actions.test.ts`: 3 files, 81 tests
pass.
- `cd server && pnpm typecheck`: passes. This includes the source layers
and the three test-tree shards.
- `tsc --noEmit` passes for `packages/plugins/sdk` (`tsconfig.json` and
`tsconfig.test.json`) and for the kitchen-sink example.
- Not run locally: the full `pnpm test:run` and the root `pnpm build`.
Required CI covers them.

## Risks

- Low risk. The direct tool route now accepts calls that it rejected
before. It still checks that the agent and the run belong to the
company. With no project ID, there is no project to check.
- A plugin that reads `runCtx.projectId` can get an empty string on both
tool paths. The tool gateway already sent this value before this change.
Only the documentation is new.
- The SDK parameter types are wider. Existing plugin code still
compiles.

## Model Used

- Claude Opus 5.5 (`claude-opus-5-5`) in Claude Code, with tool use
(shell, file edits) and extended thinking.

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have searched GitHub for duplicate or related PRs and linked
them above
- [x] I have either (a) linked existing issues with `Fixes: #` / `Closes
#` / `Refs #` OR (b) described the issue in-PR following the relevant
issue template
- [x] I have not referenced internal/instance-local Paperclip issues or
links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip`
URLs)
- [x] My branch name describes the change (e.g. `docs/...`, `fix/...`)
and contains no internal Paperclip ticket id or instance-derived details
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [ ] All Paperclip CI gates are green
- [ ] Greptile is 5/5 with no open P2s, recommendations, or follow-ups
- [ ] I will address all Greptile and reviewer comments before
requesting merge

🤖 Generated with [Claude Code](https://claude.com/claude-code)

Co-authored-by: Claude Opus 5.5 <noreply@anthropic.com>
2026-11-06 16:25:43 +00:00