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696e85e83d3e3cb91648bbdf76e81c97fd759be9
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Commits
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9835cbe1f5 |
Merge remote-tracking branch 'origin/master'
# Conflicts: # packages/db/src/backup-lib.test.ts # packages/db/src/backup-lib.ts # packages/plugins/plugin-workspace-diff/src/ui/index.tsx # packages/plugins/plugin-workspace-diff/src/workspace-diff.ts # server/src/__tests__/body-limits.test.ts # server/src/__tests__/issue-comment-reopen-routes.test.ts # server/src/__tests__/issue-thread-interactions-service.test.ts # server/src/__tests__/plugin-lifecycle-restart.test.ts # server/src/app.ts # server/src/http/body-limits.ts # server/src/middleware/error-handler.ts # server/src/routes/companies.ts # server/src/routes/issues.ts # server/src/services/issue-thread-interactions.ts # server/src/services/plugin-lifecycle.ts # ui/src/components/DevRestartBanner.test.tsx # ui/src/components/DevRestartBanner.tsx # ui/src/components/MarkdownEditor.test.tsx # ui/src/components/MarkdownEditor.tsx # ui/src/pages/Inbox.test.tsx |
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c91a062326 |
[codex] Runtime control-plane fixes (#6380)
## Thinking Path > - Paperclip orchestrates AI agents through a server-side control plane > - That control plane depends on reliable issue state transitions, plugin lifecycle behavior, import limits, and startup/shutdown handling > - Several small runtime fixes had accumulated on the working branch and were mixed with larger feature work > - Keeping them separate makes the correctness fixes reviewable and mergeable without waiting for cloud-sync UI work > - This pull request groups the server/runtime control-plane fixes into one standalone branch > - The benefit is a tighter, safer runtime baseline for retries, imports, plugin migrations, feedback flushing, and trusted cloud import handling ## What Changed - Fixed updated issue list pagination sorting and scheduled retry comment handling. - Re-applied pending plugin migrations during hot reload and fixed plugin-schema worktree seed restore. - Hardened public tenant DB startup, portable import body limits, trusted cloud import errors, and trusted cloud tenant import mutation access. - Expired stale request confirmations after user comments. - Added feedback export shutdown hardening so database-unavailable flush loops stop cleanly. - Guarded plugin worker `error` event emission when no listener is registered. ## Verification - `pnpm install --frozen-lockfile --ignore-scripts` - `pnpm --filter @paperclipai/plugin-sdk build` - `npm run install --prefix node_modules/.pnpm/sqlite3@5.1.7/node_modules/sqlite3` - `pnpm exec vitest run server/src/__tests__/issues-service.test.ts server/src/__tests__/plugin-lifecycle-restart.test.ts server/src/__tests__/server-startup-feedback-export.test.ts server/src/__tests__/issue-comment-reopen-routes.test.ts server/src/__tests__/issue-thread-interactions-service.test.ts server/src/__tests__/issue-thread-interaction-routes.test.ts server/src/__tests__/body-limits.test.ts server/src/__tests__/feedback-flush-controller.test.ts server/src/__tests__/error-handler.test.ts server/src/__tests__/board-mutation-guard.test.ts packages/db/src/backup-lib.test.ts` initially exposed local setup issues and two 5s test timeouts. - Rerun after local prereq build: `pnpm exec vitest run --testTimeout 15000 server/src/__tests__/issue-comment-reopen-routes.test.ts server/src/__tests__/issue-thread-interaction-routes.test.ts server/src/__tests__/feedback-flush-controller.test.ts server/src/__tests__/server-startup-feedback-export.test.ts` passed. - Some embedded Postgres-backed tests skipped on this host because local Postgres init was unavailable. ## Risks - Runtime-touching branch: startup/shutdown and issue interaction behavior should be reviewed carefully. - The feedback export change disables repeated flush attempts only for database connection-refused failures; other upload failures still log normally. - The plugin worker error guard avoids process crashes from unhandled EventEmitter errors but may hide errors from code paths that expected an emitted listener. > For core feature work, check [`ROADMAP.md`](ROADMAP.md) first and discuss it in `#dev` before opening the PR. Feature PRs that overlap with planned core work may need to be redirected — check the roadmap first. See `CONTRIBUTING.md`. ## Model Used - OpenAI Codex, GPT-5-based coding agent with local shell/git/tool use. Exact hosted model ID and context-window size are not exposed by the local Paperclip adapter runtime. ## Checklist - [x] I have included a thinking path that traces from project context to this change - [x] I have specified the model used (with version and capability details) - [x] I have checked ROADMAP.md and confirmed this PR does not duplicate planned core work - [x] I have run tests locally and they pass - [x] I have added or updated tests where applicable - [x] If this change affects the UI, I have included before/after screenshots - [x] I have updated relevant documentation to reflect my changes - [x] I have considered and documented any risks above - [x] I will address all Greptile and reviewer comments before requesting merge --------- Co-authored-by: Paperclip <noreply@paperclip.ing> |
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d1c5bf1d0f |
Defer async tenant import validation
Co-Authored-By: Paperclip <noreply@paperclip.ing> |
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1c5cfa5ba8 |
Add async tenant import jobs
Co-Authored-By: Paperclip <noreply@paperclip.ing> |
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7177335573 |
Filter plugin operation issue origins
Co-Authored-By: Paperclip <noreply@paperclip.ing> |
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f257530537 |
[codex] UI and dev ops quality-of-life (#6384)
## Thinking Path > - Paperclip operators spend most of their time scanning the board, inbox, sidebar, and local dev status surfaces > - Small UI and dev-ops frictions make repeated operator workflows feel slower than they need to be > - The working branch contained several independent quality-of-life improvements mixed with larger cloud work > - Grouping these smaller UI/dev-ops changes together keeps review overhead reasonable without merging them into feature PRs > - This pull request collects the operator-facing QoL polish into one standalone branch > - The benefit is a cleaner board navigation and local dev recovery experience without depending on cloud upstream sync ## What Changed - Relaxed forced 44px touch targets for small inline widgets. - Fixed mobile mention menu scrolling and sidebar spacing on touch/mobile layouts. - Synced inbox hover state with j/k selection. - Moved plugin sidebar entries into the Work section. - Added manual dev-server restart action/banner behavior. - Logged plugin bridge 502 causes for better diagnosis. ## Verification - `pnpm install --frozen-lockfile --ignore-scripts` - `pnpm --filter @paperclipai/plugin-sdk build` - `pnpm exec vitest run ui/src/components/MarkdownEditor.test.tsx ui/src/components/Sidebar.test.tsx ui/src/components/SidebarProjects.test.tsx ui/src/pages/Inbox.test.tsx ui/src/components/DevRestartBanner.test.tsx server/src/__tests__/dev-server-status.test.ts server/src/__tests__/health-dev-server-token.test.ts server/src/__tests__/plugin-routes-authz.test.ts` initially failed only because plugin SDK `dist` was not built in the fresh worktree. - Rerun after build: `pnpm exec vitest run server/src/__tests__/plugin-routes-authz.test.ts` passed. - The remaining targeted UI/dev-server tests passed on the first post-install run. ## Visual Evidence - Sidebar layout and plugin Work section:  - Inbox/task row selection and hover-state surface:  - Dev restart banner desktop:  - Dev restart banner mobile:  ## Risks - Mostly UI/dev ergonomics with low data risk. - Sidebar and inbox changes touch frequently used navigation surfaces, so visual review on desktop/mobile is still useful. > For core feature work, check [`ROADMAP.md`](ROADMAP.md) first and discuss it in `#dev` before opening the PR. Feature PRs that overlap with planned core work may need to be redirected — check the roadmap first. See `CONTRIBUTING.md`. ## Model Used - OpenAI Codex, GPT-5-based coding agent with local shell/git/tool use. Exact hosted model ID and context-window size are not exposed by the local Paperclip adapter runtime. ## Checklist - [x] I have included a thinking path that traces from project context to this change - [x] I have specified the model used (with version and capability details) - [x] I have checked ROADMAP.md and confirmed this PR does not duplicate planned core work - [x] I have run tests locally and they pass - [x] I have added or updated tests where applicable - [x] If this change affects the UI, I have included before/after screenshots - [x] I have updated relevant documentation to reflect my changes - [x] I have considered and documented any risks above - [x] I will address all Greptile and reviewer comments before requesting merge --------- Co-authored-by: Paperclip <noreply@paperclip.ing> |
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d67347be77 |
[codex] Provider vault secrets UX (#6381)
## Thinking Path > - Paperclip orchestrates AI agents that need scoped, auditable access to secrets > - Hosted and external deployments need provider vault configuration without exposing secret values in Paperclip metadata > - AWS Secrets Manager vault setup previously required too much manual operator knowledge > - Provider vault discovery and removal belong together as an independent secrets-management improvement > - This pull request adds AWS provider vault discovery/prefill plus vault removal flows > - The benefit is a safer operator path for configuring external secret storage before higher-level cloud workflows depend on it ## What Changed - Added shared validators/types for AWS provider vault discovery payloads and safe provider metadata. - Implemented AWS provider vault discovery preview on the server. - Added provider vault removal service/route behavior. - Added Secrets page UI for discovery prefill, removal messaging, and related rendering coverage. - Added Storybook provider-vault fixtures and captured screenshots for the new UX states. ## Verification - `pnpm install --frozen-lockfile --ignore-scripts` - `pnpm exec vitest run packages/shared/src/validators/secret.test.ts server/src/__tests__/aws-secrets-manager-provider.test.ts server/src/__tests__/secrets-routes.test.ts server/src/__tests__/secrets-service.test.ts ui/src/pages/Secrets.render.test.tsx` - Result: 4 files passed, 1 embedded Postgres-backed file skipped on this host because local Postgres init was unavailable. - `pnpm --filter @paperclipai/ui exec vitest run src/pages/Secrets.render.test.tsx` - `pnpm --filter @paperclipai/ui typecheck` - Storybook screenshot capture against `Product/Secrets` on `http://127.0.0.1:60381/iframe.html?id=product-secrets--secrets-inventory&viewMode=story&globals=theme:dark` ## Screenshots Provider vaults tab after this change:  AWS discovery candidate flow:  Provider vault removal confirmation:  ## Risks - Secret provider metadata handling must remain non-sensitive; validators reject credential-bearing Vault URLs and sensitive AWS discovery keys. - AWS discovery depends on deployment credentials being configured correctly outside Paperclip-managed company secrets. > For core feature work, check [`ROADMAP.md`](ROADMAP.md) first and discuss it in `#dev` before opening the PR. Feature PRs that overlap with planned core work may need to be redirected — check the roadmap first. See `CONTRIBUTING.md`. ## Model Used - OpenAI Codex, GPT-5-based coding agent with local shell/git/tool use. Exact hosted model ID and context-window size are not exposed by the local Paperclip adapter runtime. ## Checklist - [x] I have included a thinking path that traces from project context to this change - [x] I have specified the model used (with version and capability details) - [x] I have checked ROADMAP.md and confirmed this PR does not duplicate planned core work - [x] I have run tests locally and they pass - [x] I have added or updated tests where applicable - [x] If this change affects the UI, I have included before/after screenshots - [x] I have updated relevant documentation to reflect my changes - [x] I have considered and documented any risks above - [x] I will address all Greptile and reviewer comments before requesting merge --------- Co-authored-by: Paperclip <noreply@paperclip.ing> |
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9c29394f4d |
[codex] Allow cloud tenant import mutations without browser origin (#6378)
## Thinking Path > - Paperclip orchestrates AI agents for zero-human companies. > - Paperclip Cloud imports local company data into tenant Paperclip stacks through trusted server-to-server calls. > - Tenant imports authenticate as board actors with `source: "cloud_tenant"` because they act on behalf of an authorized stack user. > - The board mutation guard correctly protects browser session mutations with trusted `Origin`/`Referer` checks. > - But the guard treated trusted Cloud tenant calls like browser session mutations, so server-to-server imports without a browser origin failed with `403 Board mutation requires trusted browser origin`. > - This pull request exempts trusted Cloud tenant actors from browser-origin enforcement while preserving the session-backed browser guard. > - The benefit is that authorized Cloud imports can persist into tenant Paperclip storage without weakening browser CSRF protections. ## What Changed - Allow `req.actor.source === "cloud_tenant"` through `boardMutationGuard` without requiring browser `Origin` or `Referer` headers. - Add a focused regression test for Cloud tenant POST mutations without an origin. - Preserve the existing session-backed rejection test for board mutations that lack a trusted browser origin. ## Verification - `pnpm exec vitest run server/src/__tests__/board-mutation-guard.test.ts` - Result: 10 tests passed. ## Risks - Low risk: this only expands the existing non-browser exemption list to trusted Cloud tenant actors that have already passed tenant-server-token authentication. - The browser-session path remains covered by the existing rejection test, so missing-origin browser mutations still fail. > For core feature work, check [`ROADMAP.md`](ROADMAP.md) first and discuss it in `#dev` before opening the PR. Feature PRs that overlap with planned core work may need to be redirected — check the roadmap first. See `CONTRIBUTING.md`. ## Model Used - OpenAI Codex, GPT-5 coding agent, tool-enabled local repository editing and shell verification. ## Checklist - [x] I have included a thinking path that traces from project context to this change - [x] I have specified the model used (with version and capability details) - [x] I have checked ROADMAP.md and confirmed this PR does not duplicate planned core work - [x] I have run tests locally and they pass - [x] I have added or updated tests where applicable - [x] If this change affects the UI, I have included before/after screenshots - [x] I have updated relevant documentation to reflect my changes - [x] I have considered and documented any risks above - [x] I will address all Greptile and reviewer comments before requesting merge |
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d74f8bd762 | Allow cloud tenant import mutations without browser origin | ||
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155bcb6ded | Expose trusted cloud import errors | ||
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858fd027ec | Raise portable import body limit | ||
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2c3217bcd3 | Preserve cloud upstream error details | ||
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0fdfd4bd49 |
Populate perEntityTypeCounts in local upstream manifest (PAP-9800)
The hand-rolled manifest in buildLocalUpstreamExportBundle was missing the perEntityTypeCounts field that cloud's buildUpstreamDataCoverageReport indexes into during manifest_only preview. Compute the counts inline so cloud's coverage report receives the same field it does from its canonical builder, and so older clients that hit a non-defensive cloud still work. Co-Authored-By: Claude Opus 4.7 <noreply@anthropic.com> |
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15c8a8e6fd |
Switch cloud-upstream preview to manifest-only shape (PAP-9798)
Companies with thousands of issues serialize to >64 MiB when we ship every entity body to the cloud preview endpoint, so the wizard cannot leave the Connect step. The cloud now accepts a manifest-only preview shape (PAP-9797, cloud commit 41d3551); opt into it so the Preview push button works at PAP scale. Co-Authored-By: Claude Opus 4.7 <noreply@anthropic.com> |
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f393585ce0 |
Expire confirmations after user comments
Co-Authored-By: Paperclip <noreply@paperclip.ing> |
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b46ac6c556 |
Fix cloud upstream activation checklist
Co-Authored-By: Paperclip <noreply@paperclip.ing> |
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c94327b636 | Persist local cloud upstream runs | ||
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360cac8140 | Handle human comments during scheduled retry | ||
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1a25d1f8cc |
Preserve experimental settings with retired flags
Co-Authored-By: Paperclip <noreply@paperclip.ing> |
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51902dc6a3 |
Implement local cloud upstream UI
Co-Authored-By: Paperclip <noreply@paperclip.ing> |
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8cb8e5535d |
Log plugin bridge 502 causes
Co-Authored-By: Paperclip <noreply@paperclip.ing> |
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03976b8d41 |
Add provider vault removal
Co-Authored-By: Paperclip <noreply@paperclip.ing> |
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5bba16808a |
Add manual dev restart action
Co-Authored-By: Paperclip <noreply@paperclip.ing> |
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4a9d3f5d94 |
Implement AWS provider vault discovery
Co-Authored-By: Paperclip <noreply@paperclip.ing> |
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5e6e2e6b43 |
Fail closed for public tenant DB startup
Co-Authored-By: Paperclip <noreply@paperclip.ing> |
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edae521920 |
Re-apply pending plugin migrations on hot-reload
When a local-path plugin's source files change, the dev watcher calls
pluginLifecycleManager.restartWorker. Previously it only bounced the
worker subprocess, so newly added migrations/*.sql files were never
applied — the worker bundle ran against an out-of-date schema until
someone manually triggered POST /api/plugins/{id}/upgrade.
restartWorker now does a full deactivate+reactivate cycle via the
plugin loader, which re-reads the manifest from disk and runs
applyMigrations (idempotently) before starting the new worker. Falls
back to handle.restart() when the loader has no runtime services
(state-only test harness).
Fixes PAP-9585.
Co-Authored-By: Paperclip <noreply@paperclip.ing>
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0550cd1bc8 |
Fix updated issue list pagination sort
Co-Authored-By: Paperclip <noreply@paperclip.ing> |
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bfe6369ef5 |
Guard cheap recovery model usage (#6371)
## Thinking Path > - Paperclip is the control plane that coordinates AI-agent work through issues, heartbeats, comments, approvals, and auditable recovery paths. > - The affected subsystem is heartbeat/recovery orchestration, especially the optional cheap model profile used for operational recovery overhead. > - Cheap recovery should repair status and liveness, but it must not become the worker lane that writes deliverables, continues source work, or propagates cheap execution hints into downstream retries. > - The gap was that cheap-profile hints could follow recovery wake contexts and assignment overrides farther than intended, making real work eligible to run on the cheap model. > - This pull request separates status-only cheap recovery from normal source-work continuations, adds route guards for deliverable mutations during cheap status-only runs, and documents the invariant. > - The benefit is safer retry/recovery behavior: cheap runs can clean up control-plane state, while any remaining source work resumes through a normal/original model path. ## What Changed - Added recovery model-profile work classes so status-only recovery carries explicit guard context and normal-model continuations scrub cheap hints. - Updated heartbeat, productivity review, liveness continuation, and recovery service wakeups to request cheap only for bounded status-only recovery work. - Blocked cheap status-only recovery runs from writing issue documents, plans, attachments, work products, or assigning downstream work back to `modelProfile: "cheap"`. - Added/updated server tests for cheap profile propagation, artifact/document guards, route authorization, retry scheduling, and successful-run handoff behavior. - Documented the recovery model-profile lane in `doc/SPEC-implementation.md` and `doc/execution-semantics.md`. - After rebasing onto current `public-gh/master`, stabilized the new `InstanceSidebar` plugin-filter tests so the PR check lane stays green. ## Verification - Local: `pnpm exec vitest run --config vitest.config.ts src/services/recovery/model-profile-hint.test.ts src/__tests__/issue-agent-mutation-ownership-routes.test.ts src/__tests__/issue-document-restore-routes.test.ts` from `server/` - 3 files, 37 tests passed after final edits. - Local: `pnpm exec vitest run --config vitest.config.ts src/__tests__/heartbeat-process-recovery.test.ts` from `server/` - 44 tests passed after rerunning the cleanup-sensitive file alone. - Local: `pnpm --filter @paperclipai/ui exec vitest run src/components/InstanceSidebar.test.tsx` - 4 tests passed. - Local: `pnpm --filter @paperclipai/server typecheck` - passed. - Local: `pnpm --filter @paperclipai/ui typecheck` - passed. - PR checks on latest head `6f8c3b1380f5bd872c6f49f6f7188ecf3bb6d263` - all green, including `verify`, build, typecheck, server/general/serialized tests, e2e, Snyk, and policy. - Greptile: pass 3 returned Confidence Score 5/5 with zero unresolved Greptile review threads. ## Risks - Medium risk: recovery behavior is intentionally stricter, so any path that incorrectly relies on cheap recovery to keep doing source work will now need to hand back to a normal-model run. - Low migration risk: no schema changes. - No product UI changes; the UI file touched is a test-only stabilization after rebasing onto current `master`. > For core feature work, check [`ROADMAP.md`](ROADMAP.md) first and discuss it in `#dev` before opening the PR. Feature PRs that overlap with planned core work may need to be redirected — check the roadmap first. See `CONTRIBUTING.md`. ## Model Used - OpenAI Codex coding agent, GPT-5 model family (`gpt-5`), tool use and local code execution enabled; context window not exposed in this environment. ## Checklist - [x] I have included a thinking path that traces from project context to this change - [x] I have specified the model used (with version and capability details) - [x] I have checked ROADMAP.md and confirmed this PR does not duplicate planned core work - [x] I have run tests locally and they pass - [x] I have added or updated tests where applicable - [x] If this change affects the UI, I have included before/after screenshots (N/A: no product UI changes) - [x] I have updated relevant documentation to reflect my changes - [x] I have considered and documented any risks above - [x] I will address all Greptile and reviewer comments before requesting merge |
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e5a0f5debd |
fix(plugin): raise environmentProbe RPC timeout to 120s for cold-start sandboxes (#6289)
## Thinking Path
> - Paperclip orchestrates AI agents for zero-human companies
> - Companies provision execution environments via sandbox provider
plugins (Modal, Daytona, E2B, etc.)
> - At provision time, the server probes each plugin's environment /
sandbox-provider driver over a worker RPC to validate config
> - `workerManager.call()` defaults to a 30s timeout, but cold-start
sandboxes — Modal in particular — take ~31s to boot
> - Result: every fresh Modal environment probe fails with a worker RPC
timeout, blocking environment provisioning end-to-end
> - This PR passes `timeoutMs=120_000` to the two probe call sites
(`probePluginEnvironmentDriver`, `probePluginSandboxProviderDriver`)
> - The benefit is Modal — and any future provider with similar
cold-start latency — can be successfully probed without false-negative
timeout failures
## What Changed
- Pass `timeoutMs=120_000` to `workerManager.call()` in
`probePluginEnvironmentDriver`
(`server/src/services/plugin-environment-driver.ts`)
- Pass `timeoutMs=120_000` to `workerManager.call()` in
`probePluginSandboxProviderDriver` (same file)
## Verification
- Targeted unit tests:
```
pnpm --filter @paperclipai/server exec vitest run \
src/__tests__/plugin-environment-driver-seam.test.ts \
src/__tests__/heartbeat-plugin-environment.test.ts
```
5/5 tests pass.
- Manual: provision a fresh Modal sandbox environment from the UI.
Previously failed with a worker RPC timeout at ~30s; now succeeds.
## Risks
- Low risk. The change only raises a per-call timeout (default 30s →
explicit 120s) on two probe call sites. Fast providers are unaffected
since probe completes well below either bound. Worst case: a genuinely
hung worker now blocks the probe for 120s instead of 30s before giving
up — still bounded, and only on the provision-time probe path (not the
heartbeat/run path).
## Model Used
- Provider: Anthropic
- Model: `claude-opus-4-7` (Claude Opus 4.7, 1M context window)
- Capabilities: extended thinking, tool use, code execution
- Scope of AI assistance: the underlying 4-line code change was
human-authored by the committer; this PR (verification commands, message
structuring, and submission) was prepared with Claude per the
`paperclip-dev` skill.
## Checklist
- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have run tests locally and they pass
- [ ] I have added or updated tests where applicable — n/a, this is a
per-call timeout configuration bump; existing tests cover the probe call
path
- [x] If this change affects the UI, I have included before/after
screenshots — n/a, no UI change
- [ ] I have updated relevant documentation to reflect my changes — n/a,
the timeout is an internal worker-RPC tuning value with no documented
contract
- [x] I have considered and documented any risks above
- [x] I will address all Greptile and reviewer comments before
requesting merge
Co-authored-by: Paperclip <noreply@paperclip.ing>
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5071c4c776 |
[codex] Add workspace diff viewer plugin (#6071)
## Thinking Path > - Paperclip orchestrates AI agents for zero-human companies. > - Operators need to inspect what agents changed inside execution and project workspaces. > - The existing workspace detail views did not provide a first-party rich diff surface for staged, unstaged, head, renamed, binary, oversized, and untracked changes. > - The plugin system is the intended extension point for optional rich UI surfaces. > - This pull request adds a workspace diff plugin plus host services and shared contracts so Changes tabs can render workspace diffs through plugin slots. > - The diff-renderer dependency should stay owned by the plugin package rather than the core UI app. > - The dependency surface must stay aligned with repository PR policy, including intentionally omitting `pnpm-lock.yaml` from the PR. > - The benefit is a more reviewable workspace surface without hard-coding the renderer into every page. ## What Changed - Added `@paperclipai/plugin-workspace-diff`, including diff normalization, plugin manifest/worker/UI entrypoints, and focused plugin tests. - Kept `@pierre/diffs` scoped to `@paperclipai/plugin-workspace-diff`; removed the core UI lab diff-renderer surface and direct UI package dependency. - Added shared workspace diff types and validators, plus plugin SDK surface for workspace diff host services. - Added server workspace diff service support and route coverage for execution/project workspace diff flows. - Wired Execution Workspace and Project Workspace Changes tabs to load the diff plugin, including loading/error fallback behavior. - Added UI tests and fixtures for the Changes tabs and plugin bridge behavior. - Added the new plugin package manifest to the Docker deps stage so PR policy can validate dependency coverage. - Addressed review hardening around empty untracked patches, workspace path exposure, project workspace read capability checks, and default base refs. ## Verification - `pnpm --filter @paperclipai/plugin-workspace-diff test` - `pnpm exec vitest run packages/shared/src/validators/workspace-diff.test.ts server/src/__tests__/workspace-diff-service.test.ts ui/src/pages/ProjectWorkspaceDetail.test.tsx ui/src/pages/ExecutionWorkspaceDetail.test.tsx` - `pnpm exec vitest run ui/src/plugins/bridge.test.ts server/src/__tests__/workspace-runtime-routes-authz.test.ts` - `pnpm --filter @paperclipai/shared typecheck` - `pnpm --filter @paperclipai/plugin-workspace-diff typecheck` - `pnpm --filter @paperclipai/server typecheck` - `pnpm --filter @paperclipai/ui typecheck` - `node ./scripts/check-docker-deps-stage.mjs` - Browser screenshot captured from the local worktree dev server: https://files.catbox.moe/ofdpsp.png - Confirmed branch is rebased onto `public-gh/master`, `.github/workflows/pr.yml` is not included in the PR diff, `ui/package.json` is not included in the PR diff, and `pnpm-lock.yaml` is not included in the PR diff. ## Risks - Medium UI integration risk: the Changes tab depends on the plugin slot and host diff service path. - Medium dependency risk: this adds `@pierre/diffs` in the plugin package, but `pnpm-lock.yaml` is intentionally omitted per packaging instructions because repository automation manages lockfile updates. - Current CI blocker: downstream frozen installs fail until the repository policy path for new plugin package dependencies is chosen. - Diff rendering edge cases are covered for common working-tree and head diff states, but very large repositories may still expose performance limits. - No migrations are included. > For core feature work, check [`ROADMAP.md`](ROADMAP.md) first and discuss it in `#dev` before opening the PR. Feature PRs that overlap with planned core work may need to be redirected — check the roadmap first. See `CONTRIBUTING.md`. ## Model Used - OpenAI Codex, GPT-5 class coding model, tool-enabled local execution environment. Exact context window was not exposed by the runtime. ## Checklist - [x] I have included a thinking path that traces from project context to this change - [x] I have specified the model used (with version and capability details) - [x] I have checked ROADMAP.md and confirmed this PR does not duplicate planned core work - [x] I have run tests locally and they pass - [x] I have added or updated tests where applicable - [x] If this change affects the UI, I have included before/after screenshots - [x] I have updated relevant documentation to reflect my changes - [x] I have considered and documented any risks above - [x] I will address all Greptile and reviewer comments before requesting merge --------- Co-authored-by: Paperclip <noreply@paperclip.ing> |
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d734bd43d1 |
[codex] Roll up May 17 branch changes (#6210)
## Thinking Path > - Paperclip is the control plane for autonomous AI companies, so agent work needs visible ownership, recovery, and operator controls. > - This local branch had accumulated several related control-plane reliability and operator-experience fixes across recovery actions, watchdog folding, model-profile defaults, mentions, markdown editing, plugin launchers, and small UI polish. > - The branch needed to be converted into a PR against the current `origin/master` without losing dirty work or including lockfile/workflow churn. > - The safest standalone shape is a single rollup PR because the recovery/server/UI files overlap heavily across the local commits and splitting would create avoidable conflicts. > - This pull request replays the local branch onto latest `origin/master`, preserves the uncommitted work as logical commits, and adds a Zod 4 validator compatibility fix found during verification. > - The benefit is that the May 17 local branch can be reviewed and merged as one coherent, conflict-free branch under the 100-file Greptile limit. ## What Changed - Rebased the local May 17 branch work onto current `origin/master` in a dedicated worktree. - Preserved and committed previously dirty changes for recovery retry handling, plugin/sidebar launcher polish, and `.herenow` ignores. - Added recovery-action behavior for returning source issues to `todo` when retrying source-scoped recovery. - Included the existing local recovery/liveness/watchdog fold, Codex cheap-profile, markdown/mention, duplicate-agent, and UI polish commits from the branch. - Normalized shared validator `z.record(...)` schemas to explicit string-key records for Zod 4 compatibility. - Confirmed the PR has no `pnpm-lock.yaml` or `.github/workflows/*` changes and stays below the 100-file Greptile limit. ## Verification - `pnpm install --frozen-lockfile --ignore-scripts` - `npm run install` in `node_modules/.pnpm/sqlite3@5.1.7/node_modules/sqlite3` to build the local native sqlite3 binding after installing with scripts disabled - `pnpm exec vitest run packages/shared/src/validators/issue.test.ts packages/shared/src/project-mentions.test.ts packages/adapter-utils/src/server-utils.test.ts server/src/__tests__/heartbeat-model-profile.test.ts server/src/__tests__/issue-recovery-actions.test.ts server/src/__tests__/issue-agent-mutation-ownership-routes.test.ts server/src/__tests__/heartbeat-active-run-output-watchdog.test.ts server/src/__tests__/plugin-local-folders.test.ts ui/src/components/IssueRecoveryActionCard.test.tsx ui/src/components/Sidebar.test.tsx ui/src/components/SidebarAccountMenu.test.tsx ui/src/components/IssueProperties.test.tsx ui/src/components/MarkdownEditor.test.tsx ui/src/components/MarkdownBody.test.tsx ui/src/lib/duplicate-agent-payload.test.ts ui/src/pages/Routines.test.tsx` - First pass: 13 files passed with 201 passing tests; 3 server files failed before sqlite3 native binding was built. - After rebuilding sqlite3: `server/src/__tests__/heartbeat-model-profile.test.ts`, `server/src/__tests__/issue-recovery-actions.test.ts`, and `server/src/__tests__/heartbeat-active-run-output-watchdog.test.ts` passed/loaded; embedded Postgres tests were skipped by the local host guard. - `pnpm --filter @paperclipai/shared typecheck` - `pnpm --filter @paperclipai/adapter-utils typecheck` - `pnpm --filter @paperclipai/server typecheck` - `pnpm --filter @paperclipai/ui typecheck` ## Risks - Medium risk: this is a broad rollup PR across recovery semantics, server tests, shared validators, and UI surfaces. - Some embedded Postgres tests skipped locally due the host guard, so CI should provide the stronger database-backed signal. - UI changes were covered by component tests, but no browser screenshot was captured in this PR creation pass. - This branch may overlap with existing recovery/liveness PR work; merge this PR independently or restack/close overlapping branches rather than merging duplicate implementations together. > For core feature work, check [`ROADMAP.md`](ROADMAP.md) first and discuss it in `#dev` before opening the PR. Feature PRs that overlap with planned core work may need to be redirected — check the roadmap first. See `CONTRIBUTING.md`. ## Model Used - OpenAI Codex, GPT-5-based coding agent, tool-enabled local repository and GitHub workflow, medium reasoning effort. ## Checklist - [x] I have included a thinking path that traces from project context to this change - [x] I have specified the model used (with version and capability details) - [x] I have checked ROADMAP.md and confirmed this PR does not duplicate planned core work - [x] I have run tests locally and they pass - [x] I have added or updated tests where applicable - [ ] If this change affects the UI, I have included before/after screenshots - [x] I have updated relevant documentation to reflect my changes - [x] I have considered and documented any risks above - [x] I will address all Greptile and reviewer comments before requesting merge --------- Co-authored-by: Paperclip <noreply@paperclip.ing> |
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705c1b8d81 |
[codex] Add routine env secrets support (#6212)
## Thinking Path > - Paperclip orchestrates AI agents for zero-human companies. > - Scheduled routines are the control-plane path for recurring agent work. > - Routines already had dispatch/history, but their runtime environment did not carry routine-owned secret bindings through execution. > - Operators need routine-specific secrets that can override project/agent env without exposing secret values in history, logs, or access events. > - This pull request adds the routine env runtime contract, wires it into execution, and makes the routine UI/history surfaces show safe secret metadata. > - The benefit is that routine executions can use scoped secret refs predictably while preserving company boundaries and auditability. ## What Changed - Added routine env persistence/runtime support, including `routines.env`, `routine_runs.routine_revision_id`, revision snapshots, and idempotent migration `0086_routine_env_runtime_contract`. - Resolved routine env during heartbeat adapter config assembly with precedence `agent < project < routine` and secret access events recorded against the routine consumer. - Added secret binding synchronization for routine create/update/restore flows and guarded cross-company, missing, disabled, and deleted secret cases. - Added a Secrets tab to routine detail, env/secret history diff rendering, and Storybook coverage for the new UI states. - Added server/UI regression tests, including an embedded-Postgres QA path for routine secret execution and restore behavior. - Updated implementation/database docs for routine env and secret-binding behavior. ## Verification - `pnpm install --frozen-lockfile` after rebasing onto `public-gh/master` to refresh workspace links for the newly-added upstream Grok adapter package. - `pnpm exec vitest run server/src/__tests__/heartbeat-project-env.test.ts server/src/__tests__/routines-service.test.ts server/src/__tests__/secrets-service.test.ts server/src/__tests__/qa-routine-secrets-e2e.test.ts ui/src/components/RoutineHistoryTab.test.tsx` passed: 5 files, 92 tests. - `pnpm -r typecheck` passed across the workspace. - `pnpm build` passed. Vite emitted the existing large-chunk/dynamic-import warnings. - UI screenshots were captured locally during QA in `artifacts/pap-9521/` and `artifacts/pap-9522/`; generated screenshots are not committed to avoid adding binary artifacts to the repo. ## Risks - Migration risk is limited by `IF NOT EXISTS` guards for the new columns, FK, and index, and the migration is ordered as `0086` immediately after upstream `0085`. - Runtime behavior changes env precedence for routine executions by adding routine env as the highest-precedence layer; tests cover agent/project/routine precedence. - Secret handling is security-sensitive; tests cover value-free manifests/events/errors, disabled/missing/deleted secrets, and cross-company rejection. - UI history now renders routine env/secret diffs; tests and Storybook stories cover the main rendering paths. > For core feature work, check [`ROADMAP.md`](ROADMAP.md) first and discuss it in `#dev` before opening the PR. Feature PRs that overlap with planned core work may need to be redirected — check the roadmap first. See `CONTRIBUTING.md`. ## Model Used - OpenAI Codex coding agent based on GPT-5, with shell/tool use and medium reasoning effort. ## Checklist - [x] I have included a thinking path that traces from project context to this change - [x] I have specified the model used (with version and capability details) - [x] I have checked ROADMAP.md and confirmed this PR does not duplicate planned core work - [x] I have run tests locally and they pass - [x] I have added or updated tests where applicable - [x] If this change affects the UI, I have included before/after screenshots - [x] I have updated relevant documentation to reflect my changes - [x] I have considered and documented any risks above - [x] I will address all Greptile and reviewer comments before requesting merge --------- Co-authored-by: Paperclip <noreply@paperclip.ing> |
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ab8b471685 |
Add built-in grok_local adapter (#6087)
## Thinking Path > - Paperclip orchestrates AI agents for zero-human companies, so adapter quality directly affects what runtimes the control plane can supervise. > - Local CLI adapters are one of the core execution surfaces because they turn real coding tools into Paperclip-managed employees with heartbeats, transcripts, and reviewability. > - Grok Build was installed on the Paperclip host, but Paperclip had no built-in `grok_local` adapter, so the runtime could not be configured through the normal server/UI/CLI adapter path. > - That gap needed to be closed with the same built-in registry, environment diagnostics, transcript parsing, and skill/instructions behavior that the other local adapters already rely on. > - After the initial adapter landed, a real follow-up run showed that Grok streaming text was being rendered one fragment per line, which made transcripts harder to read even though the runtime itself was working. > - This pull request adds the built-in `grok_local` adapter end-to-end and then fixes the transcript parser so streamed Grok output is coalesced into readable assistant/thinking blocks. > - The benefit is that Grok Build becomes a first-class Paperclip runtime with a usable operator experience instead of a partially wired runtime with noisy transcript output. ## What Changed - Added a new built-in `@paperclipai/adapter-grok-local` package with server, UI, and CLI entrypoints. - Implemented Grok execution, session handling, environment diagnostics, config building, skill syncing, and parser coverage inside the new adapter package. - Registered `grok_local` across the built-in adapter inventories and capability/display metadata in server, UI, CLI, and shared constants. - Added adapter route coverage for the new built-in type. - Fixed Grok transcript readability by emitting streamed `text` and `thought` fragments as deltas so the shared transcript builder coalesces them into readable message blocks. - Added regression tests for the Grok parser and transcript coalescing behavior. ## Verification - `pnpm vitest run packages/adapters/grok-local/src/ui/parse-stdout.test.ts ui/src/adapters/transcript.test.ts` - `pnpm --filter @paperclipai/adapter-grok-local build` - Manual runtime verification on the Paperclip host during implementation and follow-up review: - confirmed the Grok CLI was installed and authenticated - confirmed the worktree dev server could be restarted cleanly and health-checked after the parser follow-up - No screenshots attached. This change is primarily adapter plumbing plus transcript formatting behavior; reviewers can verify via the Grok-backed run surfaces directly. ## Risks - This adds a new built-in adapter, so any missed registration surface could create inconsistencies between server, UI, and CLI behavior. - The adapter depends on Grok Build's current event/output shape; if upstream Grok streaming JSON changes, transcript parsing or session extraction may need follow-up updates. - The transcript readability fix intentionally changes how Grok fragments are grouped, so any downstream code that implicitly expected one entry per fragment would behave differently. > For core feature work, check [`ROADMAP.md`](ROADMAP.md) first and discuss it in `#dev` before opening the PR. Feature PRs that overlap with planned core work may need to be redirected — check the roadmap first. See `CONTRIBUTING.md`. ## Model Used - OpenAI Codex via Paperclip `codex_local` agent runtime. - GPT-5-class coding model with tool use, shell execution, file editing, and repo inspection enabled. - Exact backend model ID/context window were not surfaced to the agent in this Paperclip session. ## Checklist - [x] I have included a thinking path that traces from project context to this change - [x] I have specified the model used (with version and capability details) - [x] I have checked ROADMAP.md and confirmed this PR does not duplicate planned core work - [x] I have run tests locally and they pass - [x] I have added or updated tests where applicable - [ ] If this change affects the UI, I have included before/after screenshots - [ ] I have updated relevant documentation to reflect my changes - [x] I have considered and documented any risks above - [x] I will address all Greptile and reviewer comments before requesting merge |
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4c47eb46c3 |
[codex] Add multilingual issue preservation coverage (#6069)
## Thinking Path > - Paperclip orchestrates AI agents for autonomous companies. > - Agents and board operators coordinate through company-scoped issues, comments, documents, and heartbeat wake payloads. > - Chinese, Japanese, and Hindi text needs to survive the full issue lifecycle without normalization or prompt serialization damage. > - The riskiest paths are board issue creation, server issue/comment/document round-tripping, and scoped wake prompt rendering. > - This pull request adds focused regression coverage across those surfaces. > - The benefit is higher confidence that multilingual operators and agents can create, search, comment on, complete, and wake on issues using non-Latin text. ## What Changed - Added adapter-utils wake payload and prompt rendering coverage for Chinese, Japanese, and Hindi issue/comment text. - Added UI New Issue dialog coverage proving multilingual title and description text is submitted unchanged. - Added server route coverage that round-trips multilingual issue text through create, search, comments, documents, completion comments, and heartbeat context. - Addressed Greptile feedback by using a typed storage mock and splitting the server route integration path into smaller ordered assertions. ## Verification - `pnpm exec vitest run packages/adapter-utils/src/server-utils.test.ts ui/src/components/NewIssueDialog.test.tsx server/src/__tests__/multilingual-issues-routes.test.ts` - Result: 3 test files passed, 51 tests passed. ## Risks - Low risk: this PR adds regression coverage only and does not change runtime behavior. - The new server test uses embedded Postgres support and skips on unsupported hosts using the existing helper pattern. - No migrations are included. - No `pnpm-lock.yaml` changes are included. > For core feature work, check [`ROADMAP.md`](ROADMAP.md) first and discuss it in `#dev` before opening the PR. Feature PRs that overlap with planned core work may need to be redirected - check the roadmap first. See `CONTRIBUTING.md`. ## Model Used - OpenAI Codex, GPT-5 based coding agent, with shell, git, Vitest, and GitHub connector/CLI tool use. ## Checklist - [x] I have included a thinking path that traces from project context to this change - [x] I have specified the model used (with version and capability details) - [x] I have checked ROADMAP.md and confirmed this PR does not duplicate planned core work - [x] I have run tests locally and they pass - [x] I have added or updated tests where applicable - [x] If this change affects the UI, I have included before/after screenshots - [x] I have updated relevant documentation to reflect my changes - [x] I have considered and documented any risks above - [x] I will address all Greptile and reviewer comments before requesting merge |
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eb38b226c2 |
Fix LLM Wiki package and migration validation (#6010)
## Thinking Path > - Paperclip orchestrates AI agents for zero-human companies. > - Plugins extend the control plane with optional capabilities such as LLM Wiki. > - LLM Wiki needs its package assets and plugin-owned database migrations to work when installed from the packaged plugin. > - The bundled spaces migration used validation-hostile dynamic SQL, and the packaged plugin could omit non-dist runtime assets. > - This pull request makes the LLM Wiki package include its required assets and cuts the spaces migration over to explicit, idempotent SQL that passes the production plugin database validator. > - The benefit is a simpler plugin install path that validates and applies the bundled LLM Wiki migrations without adding plugin-specific legacy handling to Paperclip core. ## What Changed - Added the LLM Wiki package asset allowlist so agents, migrations, skills, templates, dist output, and README are included when packaged. - Renamed the bootstrap `.gitignore` template to `gitignore.template` and updated the runtime lookup so package tooling does not drop the hidden template file. - Relaxed plugin migration validation to allow namespace-scoped `INSERT`/`UPDATE` backfills and `CREATE INDEX` statements while continuing to reject destructive or cross-namespace SQL. - Replaced the LLM Wiki spaces migration's dynamic constraint-drop DO block with explicit `DROP CONSTRAINT IF EXISTS` statements. - Replaced fragile regex-source dispatch in SQL reference extraction with explicit capture-group descriptors. - Added regression coverage that applies the bundled LLM Wiki migrations through the production validator and checks the expected constraints. ## Verification - `pnpm exec vitest run --project @paperclipai/server server/src/__tests__/plugin-database.test.ts --pool=forks --poolOptions.forks.isolate=true` - `pnpm --filter @paperclipai/plugin-llm-wiki build` - `git diff --check` - Confirmed `pnpm-lock.yaml` is not included in the branch diff. ## Risks - Low migration risk for current users: LLM Wiki spaces are new, so this intentionally cuts over the plugin migration instead of adding legacy handling in core. - Validator behavior is broader than before, but still requires fully qualified plugin namespace targets, blocks deletes/destructive DDL, and keeps public table access read-only and allowlisted. > Checked [`ROADMAP.md`](ROADMAP.md); this is a targeted plugin packaging/migration fix and does not duplicate planned core feature work. See `CONTRIBUTING.md`. ## Model Used - OpenAI Codex, GPT-5 based coding agent, tool-enabled local repo access, reasoning mode managed by the Paperclip/Codex runtime. Exact context window was not surfaced in this session. ## Checklist - [x] I have included a thinking path that traces from project context to this change - [x] I have specified the model used (with version and capability details) - [x] I have checked ROADMAP.md and confirmed this PR does not duplicate planned core work - [x] I have run tests locally and they pass - [x] I have added or updated tests where applicable - [x] If this change affects the UI, I have included before/after screenshots - [x] I have updated relevant documentation to reflect my changes - [x] I have considered and documented any risks above - [x] I will address all Greptile and reviewer comments before requesting merge --------- Co-authored-by: Paperclip <noreply@paperclip.ing> |
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03ad5c5bea |
[codex] Add issue document locking (#6009)
## Thinking Path > - Paperclip orchestrates AI-agent companies through company-scoped issues, comments, and issue documents. > - Issue documents are the durable place where plans, handoffs, and other work artifacts are revised over time. > - Some documents need to be preserved as operator-approved snapshots while agents continue working on the same issue. > - Without document locking, a later board or agent write can overwrite the document key that reviewers expected to remain stable. > - This pull request adds board-managed issue document locks and makes agent writes to locked keys create a derived document instead of mutating the locked document. > - The benefit is safer document handoffs: approved or frozen issue documents stay immutable until the board explicitly unlocks them. ## What Changed - Added `locked_at`, `locked_by_agent_id`, and `locked_by_user_id` document fields plus migration `0085_tranquil_the_executioner.sql`. - Added document lock/unlock service behavior, route endpoints, activity events, and locked-document write protections. - Made agent document writes to locked keys create a new derived key such as `plan-2` rather than overwriting the locked document. - Surfaced lock state through shared issue document types, UI API methods, document header lock controls, and activity formatting. - Added server and UI tests for lock/unlock behavior, locked document immutability, and UI action visibility. - Updated `doc/SPEC-implementation.md` with the V1 document lock contract and endpoints. ## Verification - `git rebase public-gh/master` completed cleanly after committing the branch changes. - `git diff --check` passed before commit. - `pnpm run preflight:workspace-links && pnpm exec vitest run server/src/__tests__/documents-service.test.ts server/src/__tests__/issue-agent-mutation-ownership-routes.test.ts ui/src/components/IssueDocumentsSection.test.tsx ui/src/components/IssueContinuationHandoff.test.tsx ui/src/lib/document-revisions.test.ts` passed: 5 files, 32 tests. ## Risks - Medium risk because this changes the document persistence contract and adds a migration. - The migration uses `ADD COLUMN IF NOT EXISTS` and guarded foreign-key creation so it remains safe for users who may have already applied an earlier copy of the migration. - Locked documents intentionally reject board edits/deletes/restores until unlocked; any existing workflows that expected direct overwrite need to unlock first. - Agent writes to locked keys now create derived documents, which may create extra issue documents when agents retry locked writes. ## Model Used - OpenAI Codex coding agent based on GPT-5, with tool use and local code execution in the Paperclip worktree. ## Checklist - [x] I have included a thinking path that traces from project context to this change - [x] I have specified the model used (with version and capability details) - [x] I have checked ROADMAP.md and confirmed this PR does not duplicate planned core work - [x] I have run tests locally and they pass - [x] I have added or updated tests where applicable - [ ] If this change affects the UI, I have included before/after screenshots - [x] I have updated relevant documentation to reflect my changes - [x] I have considered and documented any risks above - [x] I will address all Greptile and reviewer comments before requesting merge --------- Co-authored-by: Paperclip <noreply@paperclip.ing> |
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901c088e14 |
fix: propagate projectId into wakeup context and support identifier lookup (#6026)
## Thinking Path > - Paperclip orchestrates AI agents for zero-human companies > - The server's heartbeat/wakeup pipeline resolves which project workspace an agent run should bind to > - `enqueueWakeup` resolves an issue (and therefore a project) before scheduling a run, but the resolved `projectId` was never written back into `enrichedContextSnapshot.projectId`, so `resolveWorkspaceForRun` always saw `contextProjectId === null` > - When the `issueProjectRef` DB lookup also returned null (e.g. identifier-style id like `ENV-13`, not a UUID), workspace resolution fell through to the `agent_home` fallback instead of the correct project workspace > - Surfaced while running the QA matrix on sandbox/SSH — runs were ending up in the wrong workspace > - This pull request stores the resolved `projectId` back into context and replaces the raw UUID-only DB query with `issuesSvc.getById`, which accepts both UUIDs and identifiers and canonicalizes `context.issueId` / `context.taskId` to the UUID on identifier hits > - The benefit is that wakeups triggered with identifier-style ids correctly bind to their project workspace instead of silently degrading to `agent_home` ## What Changed - In `enqueueWakeup`, after the issue resolves, write `projectId` back into `enrichedContextSnapshot.projectId` so downstream workspace resolution can use it. - Replace the raw UUID-only DB query for the issue with `issuesSvc.getById`, which handles both UUIDs and identifiers (e.g. `ENV-13`). - On an identifier hit, canonicalize `context.issueId` and `context.taskId` to the resolved UUID. ## Verification - Trigger a wakeup with an identifier-style id (`ENV-13`) on the dev instance and confirm the run binds to the correct project workspace instead of `agent_home`. - Confirm UUID-style wakeups still resolve to the same project workspace as before. ## Risks - Low risk. Scope is a single function in `server/src/services/heartbeat.ts` (+20/-7). Failure mode if regressed is the prior behavior (fallback to `agent_home`). ## Model Used - Claude (Anthropic), `claude-opus-4-7`, via Claude Code / Paperclip `claude_local` adapter. ## Checklist - [x] I have included a thinking path that traces from project context to this change - [x] I have specified the model used (with version and capability details) - [x] I have checked ROADMAP.md and confirmed this PR does not duplicate planned core work - [ ] I have run tests locally and they pass - [ ] I have added or updated tests where applicable - [x] If this change affects the UI, I have included before/after screenshots - [ ] I have updated relevant documentation to reflect my changes - [x] I have considered and documented any risks above - [x] I will address all Greptile and reviewer comments before requesting merge --------- Co-authored-by: Paperclip <noreply@paperclip.ing> |
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333a16b035 |
Fix company export with missing run logs (#5960)
## Thinking Path > - Paperclip is the control plane for autonomous AI companies. > - Company export/import lets operators move company state, including issue threads and agent execution context, between Paperclip instances. > - Issue comments can be enriched by nearby heartbeat run logs so exported threads preserve useful agent/run attribution metadata. > - Some local instances can have heartbeat run database rows whose local log files were deleted or never copied into the current workspace. > - The export path should still include the original user comments instead of failing because optional run-log metadata is unavailable. > - This pull request makes comment run-log metadata derivation tolerate missing local log files, logs the missing-file condition for operators, and adds a regression test. > - The benefit is safer company exports for real instances with incomplete local run-log storage. ## What Changed - Treat missing local heartbeat run logs as absent optional metadata while listing issue comments. - Emit a structured warning with `runId` and `logRef` when optional comment-attribution log content is missing. - Preserve the existing error behavior for non-404 run-log read failures. - Added a regression test proving user comments still list when a candidate attribution run has a missing local log reference. ## Verification - `pnpm exec vitest run server/src/__tests__/issues-service.test.ts -t "candidate attribution run log is missing"` passed: 1 selected test passed, 47 skipped. - `pnpm --filter @paperclipai/server typecheck` passed. - Greptile Review passed with Confidence Score 5/5 and zero unresolved threads on commit `f68cac02bf98d7d31e7831e5bdfa95cffa85e254`. - GitHub PR workflow run succeeded: `policy`, `verify`, four serialized server suites, `e2e`, and `Canary Dry Run` all passed. - `security/snyk (cryppadotta)` passed. - Confirmed this branch is on top of `public-gh/master` and `pnpm-lock.yaml` is not in the PR diff. ## Risks - Low risk. The change only softens optional comment metadata derivation for 404/missing local log files; other log read errors still throw. - Exported comments in this edge case may lack derived run metadata, but they remain visible/exportable instead of failing the request. - Operators may see new warnings when historical run-log references point to missing local files; those warnings indicate degraded optional metadata, not data loss. ## Model Used - OpenAI Codex, GPT-5 coding agent in this Paperclip heartbeat, with shell/git/GitHub CLI tool use. ## Checklist - [x] I have included a thinking path that traces from project context to this change - [x] I have specified the model used (with version and capability details) - [x] I have checked ROADMAP.md and confirmed this PR does not duplicate planned core work - [x] I have run tests locally and they pass - [x] I have added or updated tests where applicable - [x] If this change affects the UI, I have included before/after screenshots - [x] I have updated relevant documentation to reflect my changes - [x] I have considered and documented any risks above - [x] I will address all Greptile and reviewer comments before requesting merge --------- Co-authored-by: Paperclip <noreply@paperclip.ing> |
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1bd44c8a0d |
Harden Cloudflare sandbox execution (#5967)
## Thinking Path > - Paperclip orchestrates AI agents for zero-human companies. > - Remote-managed adapters need sandbox/environment execution to behave like real agent runs, not just local host probes. > - The Cloudflare sandbox path was the weakest leg in the SSH + Cloudflare QA matrix because bridge execution could truncate output, time out long-running installs, and under-provision the worker instance. > - That made several adapters fail for reasons unrelated to their actual business logic, which blocks confidence in Paperclip's non-local environment model. > - This pull request hardens the Cloudflare bridge/runtime path and adjusts sandbox probe budgets so adapter verification matches the measured behavior of the fixed environment. > - It also corrects the Pi sandbox install command so the QA matrix exercises a real, supported install path. > - The benefit is a materially more reliable SSH + Cloudflare adapter matrix with fewer false negatives and clearer failure boundaries. ## What Changed - Switched the Cloudflare bridge worker instance type to `standard-2` for the QA-matrix execution path. - Raised Cloudflare bridge/plugin-worker timeout budgets and added SSE keepalives so long-running install/exec calls can complete instead of dying at the transport layer. - Fixed Cloudflare bridge-channel command handling to avoid dropped final stdout chunks on short-lived execs. - Made Claude, OpenCode, and Cursor sandbox probe timeouts configurable/sandbox-aware, then tightened the defaults to the measured post-fix range. - Updated the Pi sandbox install command to use the package currently installed by the official `pi.dev` installer, pinned to a specific npm version. - Added/updated tests around Cloudflare bridge behavior and adapter sandbox probe paths. ## Verification - `pnpm --filter @paperclipai/adapter-claude-local typecheck` - `pnpm --filter @paperclipai/adapter-opencode-local typecheck` - `pnpm --filter @paperclipai/adapter-cursor-local typecheck` - `pnpm vitest run packages/adapters/cursor-local packages/adapters/claude-local packages/adapters/opencode-local packages/adapters/pi-local packages/plugins/sandbox-providers/cloudflare server/src/services/__tests__/plugin-worker-manager.test.ts` - Manual QA on the dedicated dev instance using the SSH + Cloudflare environment matrix (`ENV-29` through `ENV-40`). Clean end-to-end passes: SSH `claude_local`, `codex_local`, `cursor`, `gemini_local`; Cloudflare `claude_local`, `codex_local`, `cursor`, `gemini_local`. ## Risks - Cloudflare sandbox cost increases because the bridge worker now runs on `standard-2` instead of `lite`. - Higher timeout ceilings can delay surfacing truly hung Cloudflare bridge calls, even though they remove transport-level false negatives. - The manual heartbeat matrix still exposed follow-on execution/sync/disposition bugs in `opencode_local` and `pi_local`; those are not fixed by this PR. ## Model Used - OpenAI `gpt-5.4` via Paperclip `codex_local`, reasoning effort `high`, tool use enabled, repo search enabled. ## Checklist - [x] I have included a thinking path that traces from project context to this change - [x] I have specified the model used (with version and capability details) - [x] I have checked ROADMAP.md and confirmed this PR does not duplicate planned core work - [x] I have run tests locally and they pass - [x] I have added or updated tests where applicable - [x] If this change affects the UI, I have included before/after screenshots (not applicable) - [x] I have updated relevant documentation to reflect my changes (not applicable) - [x] I have considered and documented any risks above - [x] I will address all Greptile and reviewer comments before requesting merge --------- Co-authored-by: Paperclip <noreply@paperclip.ing> |
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4142559c37 |
[codex] Add blocked inbox attention view (#5603)
## Thinking Path > - Paperclip orchestrates AI agents for zero-human companies through company-scoped issues, comments, approvals, and execution workspaces. > - Operators need the Inbox to show not only active work, but also blocked work that may need human or agent attention. > - The existing inbox experience did not have a dedicated blocked-work surface, so blocked tasks were harder to triage and resume deliberately. > - Backend consumers also needed a compact attention signal that distinguishes actionable blockers from covered or waiting blocker states. > - This pull request adds a Blocked Inbox tab backed by issue blocker-attention metadata, shared validators, and UI helpers. > - The benefit is a clearer triage path for stalled or blocked Paperclip work without exposing external wait internals in the operator-facing UI. ## What Changed - Added shared issue blocker-attention types, validators, and exports for the API/UI contract. - Added backend blocker-attention computation and issue route support for blocked inbox data. - Added the Blocked Inbox tab, blocked reason chips, filtering/search UI, responsive layouts, and Storybook stories. - Updated inbox helpers and page behavior so toolbar controls only appear where they apply. - Added coverage for shared validators, server blocker-attention behavior, blocked inbox UI helpers/components, and the Inbox page. - Added a screenshot helper script for the blocked inbox Storybook stories. - Addressed Greptile feedback by making urgency sorting deterministic for null stop times, avoiding full blocked-inbox list enrichment for counts, and hardening the screenshot helper. ## Verification - Rebased the branch cleanly onto `public-gh/master`. - Confirmed the diff does not include `pnpm-lock.yaml`. - Confirmed the diff does not include database migration files. - Ran `pnpm exec vitest run packages/shared/src/validators/issue.test.ts server/src/__tests__/issue-blocker-attention.test.ts ui/src/components/BlockedInboxView.test.tsx ui/src/components/BlockedReasonChip.test.tsx ui/src/lib/blockedInbox.test.ts ui/src/lib/inbox.test.ts ui/src/pages/Inbox.test.tsx`. - Ran `pnpm --filter @paperclipai/shared typecheck && pnpm --filter @paperclipai/server typecheck && pnpm --filter @paperclipai/ui typecheck`. - Checked `ROADMAP.md`; this is scoped inbox/operator triage work and does not duplicate a listed roadmap feature. - Greptile Review is green on the latest head and all four Greptile review threads are resolved. - GitHub PR checks are green on the latest head: policy, security/snyk, e2e, verify, Canary Dry Run, Greptile Review, and serialized server suites 1/4 through 4/4. ## Risks - Medium review surface because this touches the shared issue contract, server issue services, and the Inbox UI together. - Blocker-attention classification may need product tuning after operators use it on real blocked queues. - UI screenshots were not attached in this PR-opening pass; the branch includes `scripts/screenshot-blocked-inbox.mjs` and Storybook stories for visual capture. > For core feature work, check [`ROADMAP.md`](ROADMAP.md) first and discuss it in `#dev` before opening the PR. Feature PRs that overlap with planned core work may need to be redirected — check the roadmap first. See `CONTRIBUTING.md`. ## Model Used OpenAI Codex, GPT-5-based coding agent with shell, git, GitHub CLI, GitHub connector, and Paperclip API tool use. Reasoning mode: medium. Context window: not exposed by the runtime. ## Checklist - [x] I have included a thinking path that traces from project context to this change - [x] I have specified the model used (with version and capability details) - [x] I have checked ROADMAP.md and confirmed this PR does not duplicate planned core work - [x] I have run tests locally and they pass - [x] I have added or updated tests where applicable - [ ] If this change affects the UI, I have included before/after screenshots - [x] I have updated relevant documentation to reflect my changes - [x] I have considered and documented any risks above - [x] I will address all Greptile and reviewer comments before requesting merge --------- Co-authored-by: Paperclip <noreply@paperclip.ing> |
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d1a8c873b2 |
fix(remote-sandbox): harden host workspace resumes (#5922)
## Thinking Path > - Paperclip orchestrates AI agents through a control plane while adapters execute work in local, remote, or sandboxed runtimes. > - Remote sandbox execution depends on a strict host-versus-remote workspace boundary: the host prepares/restores files, while the adapter command runs inside the sandbox cwd. > - Jannes' PR #5823 identified host-side failure modes that were not covered by replacement PR #5822. > - Persisting a remote pod cwd in session params could poison the next host heartbeat resume and make Paperclip inspect or upload system temp roots. > - Plugin sandbox providers also need a narrow way to receive model-provider API keys without exposing the full server environment to every plugin worker. > - This pull request ports the host-side fixes from #5823 in the current codebase style, with focused regression coverage. > - The benefit is safer remote sandbox resumes and plugin worker environment handling without broadening core plugin privileges. ## What Changed - Persist host workspace cwd, not remote sandbox cwd, in `claude_local` session params while retaining remote execution identity metadata. - Reject saved session cwds that point at system roots before heartbeat falls back to agent home workspace. - Skip sockets, FIFOs, devices, and other non-file entries during workspace restore snapshot capture/comparison. - Pass a small model-provider API-key allowlist only to plugins declaring `environment.drivers.register`. - Added focused regression tests for remote Claude session params, unsafe session cwd detection, plugin worker env filtering, and non-file snapshot entries. Credits: ports host-side fixes from Jannes' #5823. ## Verification - `pnpm vitest run packages/adapter-utils/src/workspace-restore-merge.test.ts server/src/services/session-workspace-cwd.test.ts server/src/__tests__/claude-local-execute.test.ts server/src/__tests__/plugin-database.test.ts` (25 passed, 7 skipped by existing embedded-Postgres host guard) - `pnpm --filter @paperclipai/adapter-utils typecheck` - `pnpm --filter @paperclipai/adapter-claude-local typecheck` - `pnpm --filter @paperclipai/server typecheck` ## Risks - Low risk: changes are scoped to remote sandbox/session metadata, workspace snapshot filtering, and plugin worker env setup. - Sandbox-provider plugins now receive only the explicit model-provider key allowlist; any provider needing another key name will need a deliberate allowlist update. > For core feature work, check [`ROADMAP.md`](ROADMAP.md) first and discuss it in `#dev` before opening the PR. Feature PRs that overlap with planned core work may need to be redirected — check the roadmap first. See `CONTRIBUTING.md`. ## Model Used - OpenAI Codex, GPT-5-based coding agent, tool-enabled local code execution and repository editing. ## Checklist - [x] I have included a thinking path that traces from project context to this change - [x] I have specified the model used (with version and capability details) - [x] I have checked ROADMAP.md and confirmed this PR does not duplicate planned core work - [x] I have run tests locally and they pass - [x] I have added or updated tests where applicable - [x] If this change affects the UI, I have included before/after screenshots - [x] I have updated relevant documentation to reflect my changes - [x] I have considered and documented any risks above - [x] I will address all Greptile and reviewer comments before requesting merge --------- Co-authored-by: Paperclip <noreply@paperclip.ing> |
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eb452fba30 |
Fix comment date binding regression (#5919)
## Thinking Path > - Paperclip is the control plane for autonomous AI companies, and issue comments are the primary durable communication surface between operators and agents. > - Commit `c445e592` (`fix(ui): fix message attribution for agent-posted comments with user author IDs (#5780)`) added server-side derived attribution for historical comments by scanning heartbeat runs near comment timestamps. > - That scan accidentally bound JavaScript `Date` objects directly into postgres-js SQL fragments for the run timestamp window. > - On real Postgres, that can fail while listing issue comments with `ERR_INVALID_ARG_TYPE`, which makes comments disappear from issue pages such as `PAP-9284`. > - This pull request keeps the attribution behavior intact while changing only the broken timestamp binding path. > - The benefit is that comments load again without weakening the conservative attribution recovery introduced by `c445e592`. ## What Changed - Convert the derived-attribution heartbeat-run window bounds to ISO timestamp strings before binding them into SQL, with explicit `::timestamptz` casts. - Add an embedded Postgres regression that inserts a heartbeat run and user-authored comment, then verifies `issueService.listComments()` returns the comment while the attribution scan runs. - Delete `heartbeat_runs` during the issue service test cleanup before deleting agents so the new test data does not leak across cases. ## Verification - `pnpm exec vitest run server/src/__tests__/issues-service.test.ts -t "lists user comments when derived run attribution scans a timestamp window"` - `pnpm --filter @paperclipai/server typecheck` - `git diff --check` ## Risks - Low risk. The change is limited to how timestamp parameters are bound for an existing query. - The derived attribution logic remains conservative and still requires exact run-log proof before relabeling a comment. - The regression uses embedded Postgres so it covers the postgres-js binding path that failed in production-like local runs. > For core feature work, check [`ROADMAP.md`](ROADMAP.md) first and discuss it in `#dev` before opening the PR. Feature PRs that overlap with planned core work may need to be redirected — check the roadmap first. See `CONTRIBUTING.md`. ## Model Used - OpenAI Codex via the Paperclip `codex_local` adapter; GPT-5 coding-agent family with local terminal, file-editing, and git/GitHub CLI tool use. Exact hosted model deployment ID is not exposed by this local adapter runtime. ## Checklist - [x] I have included a thinking path that traces from project context to this change - [x] I have specified the model used (with version and capability details) - [x] I have checked ROADMAP.md and confirmed this PR does not duplicate planned core work - [x] I have run tests locally and they pass - [x] I have added or updated tests where applicable - [x] If this change affects the UI, I have included before/after screenshots (not applicable: server-side comment API bugfix) - [x] I have updated relevant documentation to reflect my changes (not applicable: no documented behavior or command changed) - [x] I have considered and documented any risks above - [x] I will address all Greptile and reviewer comments before requesting merge Co-authored-by: Paperclip <noreply@paperclip.ing> |
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b947a7d76c |
[codex] Improve local plugin development workflow (#5821)
## Thinking Path > - Paperclip is the control plane for autonomous AI-agent companies. > - Plugins are the extension point for adding capabilities without expanding the core product surface. > - Local plugin development needed a tighter CLI-first loop so plugin authors can scaffold, run, install, inspect, and reload plugins without reaching into internal package paths. > - The server plugin install path also needed local-path handling that keeps plugin identity, dashboard routes, and development watchers coherent. > - This pull request adds the CLI scaffold/install workflow, fixes the server and SDK edge cases that blocked that loop, and updates the agent-facing plugin creation skill and docs. > - The benefit is that contributors can develop plugins from local folders with a documented, repeatable happy path. ## What Changed - Added `paperclipai plugin init` coverage and CLI wiring for local plugin scaffolding. - Improved local plugin install handling, plugin key route resolution, dashboard capability behavior, and dev watcher startup/reload behavior. - Fixed plugin SDK worker entrypoint validation for symlinked package layouts. - Added targeted tests for plugin init, server plugin authz/watcher behavior, SDK worker host validation, and the authoring smoke example. - Added a short local plugin development guide and refreshed the plugin authoring guide plus `paperclip-create-plugin` skill instructions. ## Verification - `pnpm run preflight:workspace-links && pnpm --filter @paperclipai/plugin-sdk build && pnpm --filter @paperclipai/create-paperclip-plugin typecheck && pnpm --filter paperclipai typecheck && pnpm --filter @paperclipai/plugin-sdk typecheck && pnpm --filter @paperclipai/server typecheck` - `pnpm exec vitest run --project paperclipai cli/src/__tests__/plugin-init.test.ts` - `pnpm exec vitest run --project @paperclipai/plugin-sdk packages/plugins/sdk/tests/worker-rpc-host.test.ts` - `pnpm exec vitest run --project @paperclipai/server server/src/__tests__/plugin-dev-watcher.test.ts --pool=forks --poolOptions.forks.isolate=true` - `pnpm exec vitest run --project @paperclipai/server server/src/__tests__/plugin-routes-authz.test.ts --pool=forks --poolOptions.forks.isolate=true` - `pnpm --dir packages/plugins/examples/plugin-authoring-smoke-example test` - Confirmed `pnpm-lock.yaml` is not included in the PR diff. ## Risks - Medium risk: this touches plugin install routing, CLI command behavior, and the local development watcher. - Local path plugin installs execute trusted local code by design; the new docs call out that trust boundary. - No database migrations are included. > For core feature work, check [`ROADMAP.md`](ROADMAP.md) first and discuss it in `#dev` before opening the PR. Feature PRs that overlap with planned core work may need to be redirected — check the roadmap first. See `CONTRIBUTING.md`. ## Model Used - OpenAI Codex, GPT-5 coding agent, tool-enabled local shell and git workflow, medium reasoning effort. Context window details were not exposed in this runtime. ## Checklist - [x] I have included a thinking path that traces from project context to this change - [x] I have specified the model used (with version and capability details) - [x] I have checked ROADMAP.md and confirmed this PR does not duplicate planned core work - [x] I have run tests locally and they pass - [x] I have added or updated tests where applicable - [x] If this change affects the UI, I have included before/after screenshots - [x] I have updated relevant documentation to reflect my changes - [x] I have considered and documented any risks above - [x] I will address all Greptile and reviewer comments before requesting merge UI screenshots: not applicable; this PR changes CLI/server/plugin docs and tests, not board UI rendering. --------- Co-authored-by: Paperclip <noreply@paperclip.ing> |
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0808b388ee |
[codex] Add source-scoped recovery actions (#5599)
## Thinking Path > - Paperclip is a control plane for autonomous AI companies, where work must end with a clear disposition rather than ambiguous agent liveness. > - Recovery currently detects stalled or missing-next-step issues, but source issue recovery can become split across child recovery issues, blockers, and comments. > - That makes it harder for operators and agents to see who owns recovery and what exact action is needed on the original issue. > - Source-scoped recovery actions give the original issue a first-class active recovery state with owner, evidence, wake policy, and resolution outcome. > - This pull request adds the recovery-action data model, backend reconciliation and resolution APIs, and board UI indicators/actions. > - The benefit is clearer stalled-work recovery without losing source issue context or relying on comments as the liveness path. ## What Changed - Added the `issue_recovery_actions` schema, shared types/constants/validators, and an idempotent `0084_issue_recovery_actions` migration ordered after current `master` migrations. - Updated stranded/missing-disposition recovery to create source-scoped recovery actions, wake the recovery owner on the source issue, and avoid locking the source issue for recovery-action wakes. - Added API support for reading active recovery actions on issue detail/list surfaces and resolving them with restored, blocked, cancelled, or false-positive outcomes. - Require blocked recovery resolutions to have an unresolved first-class blocker, and removed the UI shortcut that could mark recovery blocked without a blocker selection path. - Surfaced recovery indicators/actions in the issue UI, blocker notices, active run panels, issue rows, and Storybook coverage. - Updated docs and focused tests for recovery semantics, ownership, races, stale comments, and UI behavior. ## Verification - `pnpm exec vitest run server/src/__tests__/issue-recovery-actions.test.ts server/src/__tests__/heartbeat-process-recovery.test.ts ui/src/components/IssueRecoveryActionCard.test.tsx ui/src/components/IssueBlockedNotice.test.tsx ui/src/api/issues.test.ts` — 5 files, 72 tests passed. - `pnpm --filter @paperclipai/shared typecheck` — passed. - `pnpm --filter @paperclipai/db typecheck` — passed, including migration numbering check. - `pnpm --filter @paperclipai/server typecheck` — passed. - `pnpm --filter @paperclipai/ui typecheck` — passed. - Follow-up verification after blocker-resolution guard: `pnpm exec vitest run server/src/__tests__/issue-recovery-actions.test.ts ui/src/components/IssueRecoveryActionCard.test.tsx ui/src/api/issues.test.ts` — 3 files, 27 tests passed. - Follow-up `pnpm --filter @paperclipai/server typecheck` — passed. - Follow-up `pnpm --filter @paperclipai/ui typecheck` — passed. - UI states are available in `ui/storybook/stories/source-issue-recovery.stories.tsx`; screenshot capture helper is `scripts/screenshot-recovery-card.cjs`. ## Risks - Medium: recovery behavior changes from child recovery issue ownership toward source-scoped actions, so operators may see stalled-work state in new places. - Migration risk is mitigated by using the next migration slot after `master` and making the table/constraints/index creation idempotent for anyone who previously applied the old branch-local `0082_dizzy_master_mold` migration. - Existing child recovery issue paths are still guarded for already-created recovery issues, but new source-scoped flows should be watched in CI and Greptile review. > For core feature work, check [`ROADMAP.md`](ROADMAP.md) first and discuss it in `#dev` before opening the PR. Feature PRs that overlap with planned core work may need to be redirected — check the roadmap first. See `CONTRIBUTING.md`. ## Model Used - OpenAI Codex, GPT-5 coding agent, tool use enabled for shell, Git, GitHub, and local test execution. Context window not exposed by the runtime. ## Checklist - [x] I have included a thinking path that traces from project context to this change - [x] I have specified the model used (with version and capability details) - [x] I have checked ROADMAP.md and confirmed this PR does not duplicate planned core work - [x] I have run tests locally and they pass - [x] I have added or updated tests where applicable - [x] If this change affects the UI, I have included before/after screenshots - [x] I have updated relevant documentation to reflect my changes - [x] I have considered and documented any risks above - [x] I will address all Greptile and reviewer comments before requesting merge --------- Co-authored-by: Paperclip <noreply@paperclip.ing> |
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c445e59256 |
fix(ui): fix message attribution for agent-posted comments with user author IDs (#5780)
## Thinking Path > - Paperclip’s issue chat is an audit surface: reviewers need to trust who actually authored a message. > - Some historical agent comments were persisted with `authorUserId` and no surviving `createdByRunId`, so the UI rendered real agent output as if it came from the board user. > - A pure timestamp-window fallback is too risky because human reviewers can comment while agents are running. > - The safe recovery path is to derive attribution only when the server can prove it from same-issue run logs that include the exact posted comment id, then let the chat renderer prefer that recovered agent attribution. > - This keeps historical threads trustworthy without mutating old database rows or guessing in ambiguous cases. ## What Changed - Added shared `IssueComment` fields for derived attribution so server and UI can carry recovered `derivedAuthorAgentId`, `derivedCreatedByRunId`, and `derivedAuthorSource` consistently. - Added server-side attribution recovery in `server/src/services/issues.ts` that reads same-issue run logs and only derives agent authorship when a run log contains the exact `comment id: ...` emitted during posting. - Updated issue chat rendering in `ui/src/lib/issue-chat-messages.ts` to prefer direct agent authorship, then activity-log `runAgentId`, then the server-derived attribution. - Removed the unsafe UI-only run-window fallback from `ui/src/pages/IssueDetail.tsx` so human comments posted during an active run are not silently relabeled as agent output. - Added regression coverage for both the run-log derivation path and the chat-rendering fallback behavior. - Bounded server-side run-log enrichment to 8 concurrent reads per request and removed the unused `issueCommentSchema` declaration during PR cleanup. ## Verification - `pnpm exec vitest run ui/src/lib/issue-chat-messages.test.ts server/src/__tests__/issues-service.test.ts` - `pnpm test:run:general` - Live validation on May 12, 2026 in `PAPA-322`: confirmed the previously misattributed historical comments on `PAPA-316` now render as Claude-authored on `http://goldie.gerbil-company.ts.net:3100`. - Reviewer check: open `PAPA-316` in the running instance and confirm historical comments such as `## Investigation: exe.dev 422 + codex re-test` render under Claude instead of the board user. ## Risks - Low risk. The change is scoped to comment attribution recovery and rendering. - Derived attribution is intentionally conservative: if there is no exact run-log proof, the comment remains user-authored instead of guessing. - Run-log recovery depends on retained same-issue logs, so older comments without that evidence remain unchanged. ## Model Used - OpenAI Codex via the Paperclip `codex_local` adapter (GPT-5-class coding agent with tool use in the local Paperclip runtime; the exact deployment/model ID is not surfaced by this workspace). ## Checklist - [x] I have included a thinking path that traces from project context to this change - [x] I have specified the model used (with version and capability details) - [x] I have checked ROADMAP.md and confirmed this PR does not duplicate planned core work - [x] I have run tests locally and they pass - [x] I have added or updated tests where applicable - [ ] If this change affects the UI, I have included before/after screenshots - [ ] I have updated relevant documentation to reflect my changes - [x] I have considered and documented any risks above - [x] I will address all Greptile and reviewer comments before requesting merge --------- Co-authored-by: Paperclip <noreply@paperclip.ing> |
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ad0bb57350 |
Fix exe.dev sandbox installs for gemini/opencode local adapters (#5737)
## Thinking Path > - Paperclip orchestrates AI agents for zero-human companies, including running adapter CLIs inside remote sandboxes > - The QA matrix in PAPA-316 spins up local-runtime adapters (claude/gemini/opencode) against both SSH and the new exe.dev sandbox provider, and "Test" exercises the same install + probe path the real runtime uses > - On exe.dev the QA matrix failed at three different points: SSH/sandbox secret refs would not resolve, gemini-local could not find npm, and opencode-local installed a binary that was not on the probe-shell PATH > - These are all environment-shape issues the runtime should handle, not regressions in any individual adapter, so they need to be fixed in the shared install/resolve layer before the matrix can pass > - This pull request wires the environment id through to secret-ref resolution, bootstraps npm from a portable Node tarball when the sandbox image lacks Node, and symlinks the opencode binary into a directory that non-login shells see > - The benefit is that the QA matrix passes end-to-end on exe.dev, and any future sandbox provider that ships without Node or relies on rc-file PATH wiring gets the same fixes for free ## What Changed - `server/src/services/environment-execution-target.ts`: pass the environment `id` into `resolveEnvironmentDriverConfigForRuntime` for both the sandbox and SSH branches, so `privateKeySecretRef` / sandbox-provider secret refs (e.g. exe.dev `apiKey`) can resolve against the secret store at runtime instead of throwing `Runtime secret resolution requires an environment id`. - `packages/adapter-utils/src/sandbox-install-command.ts`: extend `buildSandboxNpmInstallCommand` with an `ENSURE_NPM_PREAMBLE` that, when `npm` is missing, downloads a portable Node v22 tarball into `$HOME/.local` and sets `PAPERCLIP_NPM_BOOTSTRAPPED=1` so the install step skips sudo (sudo's `secure_path` would lose the freshly-installed `npm` in `$HOME/.local/bin`). Distro-packaged Node from apt-get is intentionally avoided because it tends to be too old to parse modern JS syntax used by `@google/gemini-cli`. - `packages/adapters/gemini-local/src/index.ts`: switch the hardcoded `npm install -g @google/gemini-cli` to `buildSandboxNpmInstallCommand`, so gemini-local picks up the same sudo-aware + npm-bootstrap behavior as the other local adapters. - `packages/adapters/opencode-local/src/index.ts`: append a step to the install command that symlinks `$HOME/.opencode/bin/opencode` into `$HOME/.local/bin`. The upstream installer only adds `~/.opencode/bin` to PATH via `~/.bashrc`, which non-login `sh -c` probe invocations do not source. - `packages/adapter-utils/src/sandbox-install-command.test.ts`: cover the new preamble plus the unchanged root/sudo/user-prefix branches. ## Verification - `cd packages/adapter-utils && npm test -- sandbox-install-command` (passes; new "bootstraps npm from a portable Node tarball when missing" case is included). - Manual: ran the in-app `Test` action against the QA matrix dev instance for `QA exe.dev Claude`, `QA exe.dev Gemini`, and `QA exe.dev OpenCode` — all three now report `status=pass` including the hello probe. `QA SSH Claude` also passes; without the environment-id fix, SSH resolution threw before the wrapper / install fixes could run. - Suggested reviewer check: re-run the matrix on a fresh exe.dev environment and confirm the install step no longer hits `npm: command not found` for gemini and the opencode probe no longer hits `opencode: command not found`. ## Risks - Low/medium. The npm bootstrap pins Node `v22.11.0` from `nodejs.org/dist`; if that URL becomes unreachable the install will fail with a clear `curl` error rather than corrupting state. The bootstrap path is only taken when `npm` is genuinely missing, so existing sandbox images that ship with Node are unaffected. - The opencode symlink uses `ln -sf` into `$HOME/.local/bin`, which is created with `mkdir -p`; idempotent on re-install. - The `id` change is a strict additive: callers previously got `undefined` and only the secret-ref code paths actually read it. No behavior change for environments without secret refs. ## Model Used - Claude (Anthropic), `claude-opus-4-7`, with extended thinking and tool use enabled. Iterated through the Paperclip QA matrix harness; no other model assisted. ## Checklist - [x] I have included a thinking path that traces from project context to this change - [x] I have specified the model used (with version and capability details) - [x] I have checked ROADMAP.md and confirmed this PR does not duplicate planned core work - [x] I have run tests locally and they pass - [x] I have added or updated tests where applicable - [ ] If this change affects the UI, I have included before/after screenshots (n/a — runtime/install path only) - [x] I have considered and documented any risks above - [x] I will address all Greptile and reviewer comments before requesting merge --------- Co-authored-by: Paperclip <noreply@paperclip.ing> |
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486fb88a15 |
Add Cloudflare sandbox provider plugin (#5687)
> _Stacked on top of #5685 → #5686. Diff against master includes commits from earlier PRs in the stack — review focuses on the two new commits (`Extend sandbox callback bridge for Worker-hosted plugins` + `Add Cloudflare sandbox provider plugin`)._ ## Thinking Path > - Paperclip orchestrates AI agents for zero-human companies > - Each agent runs in a sandbox environment, and operators choose which provider backs that sandbox — today E2B and Daytona are bundled with the platform > - Cloudflare Workers + Durable Objects + the Sandbox SDK offer a credible new option: globally distributed, cheap idle, and operator-deployable as a single Worker > - To plug it in, Paperclip needs (a) a provider plugin that speaks the `PaperclipPluginManifestV1` lifecycle and (b) a small operator-deployed Worker — the **bridge** — that adapts Paperclip's runtime RPCs to the Cloudflare Sandbox SDK > - The plugin extends the existing sandbox-callback-bridge with a `bridge.transport: "worker"` discriminator so the platform routes runtime RPCs through the Worker bridge instead of the in-process runner > - This pull request adds the plugin, the bridge Worker template, and the supporting adapter-utils + server hooks the new transport needs > - The benefit is that operators can run sandboxes on Cloudflare's edge with no new platform code beyond installing the plugin and deploying the Worker ## What Changed **Shared support (`Extend sandbox callback bridge for Worker-hosted plugins`):** - `packages/adapter-utils/src/sandbox-callback-bridge.{ts,test.ts}`: expose `expectedHostHeader` so plugin-side bridge clients can verify the canonical request envelope before forwarding. - `packages/adapter-utils/src/command-managed-runtime.{ts,test.ts}`: relax the always-fresh runner construction so callers can re-use a runner across exec calls (Worker-hosted bridges hold the runner inside a Durable Object). - `server/src/services/environment-runtime.ts` + `environment-runtime.test.ts`: route Worker-hosted bridges through the same env-shaping path as E2B and pin the `requestEnv` contract. - `server/src/services/plugin-environment-driver.ts`: thread an optional `issueId` through the runtime descriptor so bridges can scope leases to the originating issue (used by Cloudflare to map a sandbox to the issue/workflow for billing and audit). - `packages/plugins/sdk/src/protocol.ts`: add `issueId?` to `PluginEnvironmentDriverBaseParams` and the new `bridge.transport: "worker"` discriminator that the new plugin declares. - `server/__tests__/heartbeat-plugin-environment.test.ts`: pin the heartbeat path against the new runtime descriptor. **The Cloudflare plugin itself (`Add Cloudflare sandbox provider plugin`):** - `packages/plugins/sandbox-providers/cloudflare/`: plugin entry, manifest, plugin runtime (lifecycle + bridge client), config parsing, and Vitest coverage. Manifest declares `bridge.transport: "worker"` so the platform routes runtime RPCs through the bridge client. - `bridge-template/`: a Worker template the operator deploys with `wrangler`. Owns Durable Object-backed sessions (`sessions.ts`), exec/stream routes (`exec.ts`, `routes.ts`), and an HMAC auth layer (`auth.ts`) that pins the `Host` header surface. Includes the SDK-contract-correct exec implementation, lease recovery, and chunked stdout/stderr streaming. - Tests cover lease/session handoff (`bridge-template/src/exec.test.ts`, `routes.test.ts`), bridge client request shaping (`src/bridge-client.test.ts`), and end-to-end plugin behavior (`src/plugin.test.ts`) including streamed exec output. 27 tests in total. - `README.md` walks the operator through deploying the bridge Worker, registering the plugin, and configuring the runtime. ## Verification - `pnpm typecheck` - `pnpm exec vitest run --no-coverage packages/adapter-utils/src/sandbox-callback-bridge.test.ts packages/adapter-utils/src/command-managed-runtime.test.ts server/src/__tests__/environment-runtime.test.ts server/src/__tests__/heartbeat-plugin-environment.test.ts` - `(cd packages/plugins/sandbox-providers/cloudflare && pnpm test)` — 27 passing For an operator-side smoke test: 1. Deploy the bridge: `cd packages/plugins/sandbox-providers/cloudflare/bridge-template && wrangler deploy` 2. Register the plugin in your Paperclip instance, point its bridge URL at the deployed Worker, set the HMAC shared secret. 3. Create a sandbox environment whose provider is `cloudflare`, then run a Codex or Claude job against it. ## Risks - Adds a new `bridge.transport: "worker"` code path, but the existing E2B / Daytona transports go through the same shaped helpers and have explicit test coverage that pins their behavior unchanged. - The Worker bridge stores session state in a Durable Object; operator instances must be aware of the corresponding Cloudflare costs (DO requests, storage). Documented in the README. - The `issueId` plumbing is optional throughout — existing plugins that don't supply it continue to work. ## Model Used - Provider: Anthropic - Model: Claude Opus 4.7 (1M context) - Capabilities used: extended reasoning, tool use (Read/Edit/Bash/Grep) ## Checklist - [x] I have included a thinking path that traces from project context to this change - [x] I have specified the model used (with version and capability details) - [x] I have checked ROADMAP.md and confirmed this PR does not duplicate planned core work - [x] I have run tests locally and they pass - [x] I have added or updated tests where applicable - [ ] If this change affects the UI, I have included before/after screenshots — N/A, no UI change - [x] I have updated relevant documentation to reflect my changes (plugin README, bridge-template README) - [x] I have considered and documented any risks above - [x] I will address all Greptile and reviewer comments before requesting merge --------- Co-authored-by: Paperclip <noreply@paperclip.ing> |
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b24c6909e8 |
Harden remote sandbox runtime probes, timeouts, and installs (#5685)
## Thinking Path > - Paperclip orchestrates AI agents for zero-human companies > - Each agent runs inside a sandbox environment so its CLI is isolated from the host > - Sandbox-backed adapter runs go through a small set of shared helpers — `ensureAdapterExecutionTargetCommandResolvable`, the sandbox callback bridge runner, and per-adapter `SANDBOX_INSTALL_COMMAND` strings > - When standing up new sandbox provider plugins, the existing helpers timed out, missed install fallbacks, or leaned on assumptions that only held for E2B > - Local adapters (`claude-local`, `codex-local`, `gemini-local`, `opencode-local`) needed slightly hardened probes so they could install themselves and validate inside *any* remote sandbox transport, not just E2B > - This pull request bundles those runtime fixes so future sandbox provider plugins inherit a working baseline > - The benefit is that adding a new sandbox provider plugin no longer requires touching adapter-utils or each local-adapter probe — the supporting infra is already correct ## What Changed - `packages/adapter-utils/src/execution-target.ts`: introduce `DEFAULT_REMOTE_SANDBOX_ADAPTER_TIMEOUT_SEC = 1800` and `resolveAdapterExecutionTargetTimeoutSec(...)`. Local and SSH adapters keep the historical "0 means no adapter timeout" behavior; sandbox-backed runs without an explicit `timeoutSec` get an explicit 30-minute default so remote installs and warm-up don't time out at the per-RPC default. Plumbed `timeoutSec` through `ensureAdapterExecutionTargetCommandResolvable` so install probes inside a sandbox honor adapter-level overrides instead of the bridge's 5-minute default. - `packages/adapters/opencode-local/src/index.ts`: switch `SANDBOX_INSTALL_COMMAND` from `npm install -g opencode-ai` to `curl -fsSL https://opencode.ai/install | bash`. The npm package reifies four large prebuilt-binary subpackages in parallel even though only one matches the host arch; on bandwidth-constrained sandboxes that blew through the 240s install budget. The official installer fetches one arch-specific binary and adds `$HOME/.opencode/bin` to PATH via `~/.bashrc`, which the sandbox-callback-bridge login-shell script already sources. - `packages/adapters/{claude,codex,gemini,opencode}-local/`: harden remote-target probes — pass `--skip-git-repo-check` for Codex when probing outside a repo, normalize permission flags for Claude, and add `*.remote.test.ts` coverage that exercises the remote-sandbox path explicitly for each adapter. - `packages/adapter-utils/src/sandbox-install-command.{ts,test.ts}` (new): add `buildSandboxNpmInstallCommand` helper. `server/src/adapters/registry.ts` + new `server/src/__tests__/adapter-registry.test.ts`: wire adapter install commands so they fall back to a writable `$HOME/.local` prefix when global install isn't available. - `server/src/__tests__/plugin-worker-manager.test.ts` + new `server/src/__tests__/fixtures/plugin-worker-delayed.cjs`: pin per-call timeout overrides so plugin worker exec calls honor the caller's timeout instead of the worker's default. ## Verification - `pnpm typecheck` - `pnpm exec vitest run --no-coverage packages/adapter-utils/src/execution-target-sandbox.test.ts packages/adapter-utils/src/sandbox-install-command.test.ts` - `pnpm exec vitest run --no-coverage server/src/__tests__/plugin-worker-manager.test.ts server/src/__tests__/adapter-registry.test.ts server/src/__tests__/claude-local-adapter-environment.test.ts server/src/__tests__/claude-local-execute.test.ts server/src/__tests__/gemini-local-adapter-environment.test.ts` - `pnpm exec vitest run --no-coverage packages/adapters/codex-local/src/server/test.remote.test.ts packages/adapters/opencode-local/src/server/test.remote.test.ts packages/adapters/codex-local/src/server/codex-args.test.ts packages/adapters/codex-local/src/server/execute.remote.test.ts packages/adapters/gemini-local/src/server/execute.remote.test.ts` All passing locally. ## Risks - Touches shared `adapter-utils` and several `*-local` adapters. The 30-minute default applies only when both (a) the target is `remote+sandbox` and (b) no `timeoutSec` is configured — local + SSH paths are unchanged. New test coverage was added alongside each behavior change to pin the contracts. - Switching OpenCode's install command to the official installer is a behavior change for any operator running OpenCode inside a remote sandbox. Local installs are unaffected (the `SANDBOX_INSTALL_COMMAND` only runs when an adapter is being installed inside a sandbox). - Low risk overall — no migrations, no API surface change. ## Model Used - Provider: Anthropic - Model: Claude Opus 4.7 (1M context) - Capabilities used: extended reasoning, tool use (Read/Edit/Bash/Grep), no code execution beyond local repo commands ## Checklist - [x] I have included a thinking path that traces from project context to this change - [x] I have specified the model used (with version and capability details) - [x] I have checked ROADMAP.md and confirmed this PR does not duplicate planned core work - [x] I have run tests locally and they pass - [x] I have added or updated tests where applicable - [ ] If this change affects the UI, I have included before/after screenshots — N/A, no UI change - [x] I have updated relevant documentation to reflect my changes - [x] I have considered and documented any risks above - [x] I will address all Greptile and reviewer comments before requesting merge Co-authored-by: Paperclip <noreply@paperclip.ing> |
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534aee66ae |
Add cursor_cloud adapter for Cursor SDK + Cloud Agents API v1 (#5664)
## Thinking Path
> - Paperclip orchestrates AI agents for zero-human companies
> - There are many adapter types, one per agent-runtime product (Claude,
Codex, OpenCode, Cursor local CLI, etc.)
> - Cursor shipped a public TypeScript SDK on 2026-04-29 that exposes
Cursor's full hosted-agent platform (cloud VMs, harness, MCP, skills,
hooks)
> - Paperclip had no first-class adapter for this — agents that wanted
to use Cursor's managed cloud runtime had to fall back to the local CLI
adapter, which loses the cloud session, streaming, and durable run model
> - This PR adds a new `cursor_cloud` adapter built directly on
`@cursor/sdk`, with Paperclip's heartbeat mapped to Cursor's
durable-agent + per-run model
> - The benefit is that any Paperclip agent can now drive a Cursor cloud
agent across heartbeats with native session reuse, streaming, and
cancellation, while Paperclip remains the source of truth for issue/task
state
## What Changed
- New built-in adapter package `packages/adapters/cursor-cloud` (15
files, ~1.7k LOC) backed by `@cursor/sdk` ^1.0.12
- `src/server/execute.ts` — SDK-first lifecycle: `Agent.create` /
`Agent.resume` / `Agent.getRun` / `agent.send` / `run.stream` /
`run.wait`, with session reuse keyed on the (runtime env type, env name,
repo set) tuple
- `src/server/session.ts` — codec for `cursorAgentId` + `latestRunId` +
repo metadata, persisted in `runtime.sessionParams`
- `src/server/test.ts` — environment probe via `Cursor.me()` and
optional model validation via `Cursor.models.list()`
- `src/ui/parse-stdout.ts` + `src/cli/format-event.ts` — normalize
Cursor SDK message types (`status`, `thinking`, `assistant`, `user`,
`tool_call`, `tool_result`, `result`) into Paperclip transcript events
for the UI and CLI
- Registrations: `packages/shared/src/constants.ts`,
`packages/adapter-utils/src/session-compaction.ts`,
`server/src/adapters/{registry,builtin-adapter-types}.ts`,
`ui/src/adapters/{registry,adapter-display-registry}.ts` +
`ui/src/adapters/cursor-cloud/index.ts`, `cli/src/adapters/registry.ts`,
plus workspace deps in `cli`/`server`/`ui` `package.json`
- `ui/src/components/AgentConfigForm.tsx` — hide local-Cursor
`mode`/thinking-effort field for `cursor_cloud` (different config
surface)
- 11 vitest tests covering execute paths (fresh create, matching-resume,
active-run reattach, non-finished result), session codec round-trip,
transcript parsing, and config building
## Verification
Reviewer steps:
```bash
pnpm install
pnpm --filter @paperclipai/adapter-cursor-cloud typecheck # → clean
pnpm vitest run packages/adapters/cursor-cloud # → 11/11 passing
```
End-to-end check against a real Cursor cloud agent (requires
`CURSOR_API_KEY` and Cursor GitHub-app install on the target repo):
1. Create a `cursor_cloud` agent in Paperclip with `repoUrl` set to the
test repo, `repoStartingRef: main`, and `env.CURSOR_API_KEY` set
2. Trigger a heartbeat → adapter calls `Agent.create({ cloud: { env: {
type: "cloud" }, repos: [...] } })`, streams events, terminates on
`finished`
3. Trigger a second heartbeat → adapter calls `Agent.resume` or
`agent.send` follow-up depending on prior-run state, reusing
`cursorAgentId`
4. The Paperclip UI/CLI transcript reflects Cursor `status` / `thinking`
/ `assistant` events as they stream
5. Cancellation from Paperclip maps to `run.cancel()` or Cloud API v1
`cancelRun` for cross-heartbeat cancellation
A direct-SDK smoke run against a real repo (devinfoley/my_test_project @
main) confirmed: `Cursor.me()` ok → `Agent.create` → `agent.send` →
`run.stream()` (30 events) → terminal status `finished` in ~11s.
## Risks
- **New adapter, additive only.** No existing adapter or registry is
replaced; current `cursor` local-CLI adapter is untouched. Default
behavior of any existing agent is unchanged.
- **External dependency on `@cursor/sdk`.** Cursor's SDK is v1.0.x and
may evolve. Mocked unit tests cover the public surface used here; if the
SDK breaks compatibility we update the adapter independently.
- **Cost/budget.** `cursor_cloud` runs on Cursor's billed cloud VMs;
operators must understand they are spending money outside Paperclip's
budget controls when they enable this adapter. Same shape as other
API-billed adapters.
- **No webhook support in V1.** The SDK already provides
stream/wait/cancel/reattach, so V1 does not require a public callback
URL. If a future use case needs out-of-band wakes, we add a Cloud API v1
webhook bridge as a separate change. This is called out in the issue
plan document.
- **Lockfile.** Per repo policy, `pnpm-lock.yaml` is intentionally not
in this PR — CI's lockfile workflow will update it on merge given the
manifest changes.
## Model Used
- Provider: Anthropic Claude (via Claude Code / Paperclip `claude_local`
adapter)
- Model: `claude-opus-4-7` (Claude Opus 4.7), knowledge cutoff January
2026
- Mode: standard tool-use with extended reasoning
- Context: ~200k token window
- Capabilities used: code generation, multi-file edits, shell/test
execution, GitHub PR workflow
## Checklist
- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have run tests locally and they pass (11/11 in
`packages/adapters/cursor-cloud`)
- [x] I have added or updated tests where applicable (4 new test files,
11 cases)
- [ ] If this change affects the UI, I have included before/after
screenshots (the only UI change is hiding the local-Cursor mode field on
the `cursor_cloud` adapter — happy to attach a screenshot if the
reviewer wants one)
- [x] I have updated relevant documentation to reflect my changes (issue
plan document supersedes the pre-SDK design; tracked in PAPA-203)
- [x] I have considered and documented any risks above
- [x] I will address all Greptile and reviewer comments before
requesting merge
---------
Co-authored-by: Paperclip <noreply@paperclip.ing>
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0096b56a1c |
[codex] Add LLM Wiki plugin host support (#5597)
## Thinking Path > - Paperclip orchestrates AI agents for zero-human companies. > - The plugin system needs host contracts and runtime support before large plugins can integrate cleanly. > - The source branch mixed the LLM Wiki package with supporting host/runtime work, managed plugin skills, root-level storage spaces, and a bookmarks reference plugin. > - [PAP-9173](/PAP/issues/PAP-9173) asked for the current branch to be split by file boundary: plugin package separately from everything else. > - [PAP-9188](/PAP/issues/PAP-9188) clarified that LLM Wiki may have plugin-local spaces, but Paperclip core should not reorganize top-level local storage into spaces. > - Follow-up review clarified that the bookmarks example should not ship in this PR either. > - This pull request contains the non-`packages/plugins/plugin-llm-wiki/` host/runtime work, keeps runtime state under the selected Paperclip instance root, and no longer includes the bookmarks example. ## What Changed - Added/updated plugin host contracts, SDK types, worker RPC plumbing, managed plugin skill support, and related server tests. - Removed the bookmarks example plugin package and its bundled-example/workspace references. - Removed the root-level local spaces CLI/migration surface and restored instance-root runtime defaults for config, db, logs, storage, secrets, workspaces, projects, and adapter homes. - Replaced shared root `space-paths` helpers with `home-paths` helpers for core runtime storage. - Tightened stranded recovery unique-conflict detection so concurrent recovery scans reuse the raced recovery issue when Postgres errors are wrapped. - Kept `packages/plugins/plugin-llm-wiki/` out of this PR diff; plugin-local spaces remain in the stacked plugin-only PR. ## Verification - `pnpm exec vitest run cli/src/__tests__/data-dir.test.ts cli/src/__tests__/home-paths.test.ts cli/src/__tests__/onboard.test.ts packages/shared/src/home-paths.test.ts packages/db/src/runtime-config.test.ts server/src/__tests__/agent-instructions-service.test.ts server/src/__tests__/claude-local-execute.test.ts server/src/__tests__/codex-local-execute.test.ts` - `pnpm exec vitest run packages/db/src/runtime-config.test.ts` - `pnpm exec vitest run server/src/__tests__/plugin-routes-authz.test.ts` - `pnpm --filter @paperclipai/server typecheck` - `pnpm exec vitest run server/src/__tests__/heartbeat-process-recovery.test.ts -t "reuses the raced stranded recovery issue"` skipped locally because embedded Postgres did not initialize on this macOS temp host; the code path was typechecked and is covered by Linux CI. - Boundary check: no core references remain for `PAPERCLIP_SPACE_ID`, `spaces migrate-default`, `@paperclipai/shared/space-paths`, `registerSpacesCommands`, or the removed bookmarks example. - Previous PR head `4f23e034` had green GitHub checks: `verify`, all four serialized server shards, `e2e`, `Canary Dry Run`, `policy`, Snyk, and `Greptile Review`. Current head `582f466d` is re-running checks after the bookmarks deletion. ## Risks - Plugin host changes touch shared runtime paths, so regressions would most likely appear in adapter startup, plugin loading, or local dev path defaults. - Removing the bookmarks example also removes one demonstration of plugin database namespaces plus local-folder persistence; remaining plugin examples still cover bundled example discovery and plugin host flows. - The plugin package itself is intentionally deferred to the stacked plugin-only PR, where LLM Wiki plugin-local spaces live. - Existing installs that tested the transient root-level spaces CLI should stop using it; this PR intentionally removes that unsupported migration surface before merge. > For core feature work, check [`ROADMAP.md`](ROADMAP.md) first and discuss it in `#dev` before opening the PR. Feature PRs that overlap with planned core work may need to be redirected — check the roadmap first. See `CONTRIBUTING.md`. ## Model Used - OpenAI GPT-5 Codex via Codex CLI, tool use and local code execution enabled; context window not exposed. ## Checklist - [x] I have included a thinking path that traces from project context to this change - [x] I have specified the model used (with version and capability details) - [x] I have checked ROADMAP.md and confirmed this PR does not duplicate planned core work - [x] I have run tests locally and they pass, except where noted above for host-specific embedded Postgres initialization - [x] I have added or updated tests where applicable - [x] If this change affects the UI, I have included before/after screenshots - [x] I have updated relevant documentation to reflect my changes - [x] I have considered and documented any risks above - [x] I will address all Greptile and reviewer comments before requesting merge Stacked follow-up: PR #5592 contains only `packages/plugins/plugin-llm-wiki/` and targets this branch. --------- Co-authored-by: Paperclip <noreply@paperclip.ing> |