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Author SHA1 Message Date
67616dd7ea Rework secrets dialog and add in-sheet agent access (#9797)
## Thinking Path

> - Paperclip is the open source control plane people use to manage AI
agents and the credentials those agents need for work.
> - The secrets UI is responsible for making credential creation
understandable and for showing where credentials are used.
> - The create flow previously exposed an editable generated key too
early, used an unnatural field order, and rendered uneven provider tab
rows.
> - The detail sheet also lacked an in-context way to see and manage
which agents reference a selected secret.
> - This pull request makes the create dialog follow a predictable
name-to-value flow and adds agent access management directly to the
secret details sheet.
> - The benefit is a clearer secrets workflow with fewer accidental key
edits and less navigation when granting or revoking agent access.

## Linked Issues or Issue Description

**Subsystem affected:** `ui/` — React + Vite board UI

**Problem or motivation:** Creating a secret currently makes its
generated key look immediately editable, places fields in an awkward
keyboard order, and applies provider-tab overrides that produce uneven
rows. After creation, operators cannot inspect or change agent access
from the selected secret's detail sheet.

**Proposed solution:** Generate the key from the path-style name and
keep it read-only until an explicit Edit action; place Value directly
after Name; use the standard tab sizing; and add an Agent access section
that reads and updates `secret_ref` / `user_secret_ref` environment
bindings through agent adapter configuration.

**Alternatives considered:** Keeping access management only on agent
configuration screens was rejected because it hides a secret-centric
question—“which agents can use this?”—and requires repetitive
navigation. Keeping the key always editable was rejected because the
generated value should be the safe default.

**Roadmap alignment:** No matching item was found in `ROADMAP.md`; this
is a focused usability and access-management improvement to the existing
secrets surface.

**Additional context:** GitHub search found no duplicate PR for this
dialog and in-sheet access change. PR #9321 also mentions user-secret
resolution but addresses unrelated skills-route behavior.

## What Changed

- Auto-generate the create-secret key from Name, keep it read-only by
default, and expose an explicit Edit action.
- Use a path-style Name placeholder (`/dev/foo/bar`) and place Value
immediately after Name for natural keyboard navigation.
- Remove tab sizing/whitespace overrides that caused uneven provider-tab
row heights.
- Add an Agent access section to the Details tab that lists referencing
agents and grants or revokes `secret_ref` / `user_secret_ref`
environment bindings in place.
- Cover company secrets and each-user definitions with focused render
tests.

## Verification

- `pnpm exec vitest run ui/src/pages/Secrets.render.test.tsx` — 17/17
passed.
- `pnpm --filter @paperclipai/ui typecheck` — passed.
- `pnpm check:token-gates` — changed files are clean; the
repository-wide command currently reports five pre-existing `#9627`
violations in unrelated files (`Sidebar.tsx`, `Inbox.tsx`,
`IssueDetail.tsx`, `Issues.tsx`, and `Routines.tsx`).
- Additional secrets verification completed during implementation: 35/35
adjacent secrets tests passed, and the flow was checked in a real
browser in light and dark themes.

## Risks

- Agent access mutations update adapter environment configuration, so
malformed legacy env entries could affect how a binding is displayed or
revoked.
- Each-user definitions use `user_secret_ref` rather than `secret_ref`;
focused tests cover selecting the correct binding type.
- No database or API contract changes are included.

> For core feature work, check [`ROADMAP.md`](ROADMAP.md) first and
discuss it in `#dev` before opening the PR. Feature PRs that overlap
with planned core work may need to be redirected — check the roadmap
first. See `CONTRIBUTING.md`.

## Model Used

- Anthropic Claude Fable 5 assisted with the implementation using
repository-aware code editing and test execution.
- OpenAI GPT-5.5 via Codex CLI assisted with PR preparation, branch
hygiene, focused verification, GitHub operations, and review/check
loops.

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have searched GitHub for duplicate or related PRs and linked
them above
- [x] I have either (a) linked existing issues with `Fixes: #` / `Closes
#` / `Refs #` OR (b) described the issue in-PR following the relevant
issue template
- [x] I have not referenced internal/instance-local Paperclip issues or
links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip`
URLs)
- [x] My branch name describes the change (e.g. `docs/...`, `fix/...`)
and contains no internal Paperclip ticket id or instance-derived details
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [x] All Paperclip CI gates are green
- [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups
- [x] I will address all Greptile and reviewer comments before
requesting merge

---------

Co-authored-by: Claude Fable 5 <noreply@anthropic.com>
Co-authored-by: Paperclip <noreply@paperclip.ing>
canary/v2026.718.0-canary.0
2026-07-18 14:39:06 -05:00
Dotta 83765f08d1 fix(ui): reap React 19.2 performance-track measures (memory leak) (#9827)
## Thinking Path

> - Paperclip is the open source app people use to manage AI agents for
work
> - Its web UI is a long-lived single-page app; users leave tabs open
for hours/days
> - We chased multi-GB tab memory growth through several fixes (#9569,
#9624, #9627, #9701) that cut real churn — but the footprint kept
climbing
> - A heap-snapshot diff on a 12-hour tab finally showed the true cause:
of 13.2M heap nodes, **12.1M were `PerformanceMeasure` objects** — React
19.2 emits a `performance.measure()` per component render for its
DevTools "Performance Tracks" and never clears them
> - These are native objects, so `performance.memory` never reported
them (it read a flat ~74 MB while the real heap was ~308 MB), which is
why our earlier heap/DOM sampling looked stable while the footprint
ballooned
> - This pull request periodically clears the User Timing measure
buffer, since nothing in the app consumes it
> - The benefit is that long-lived tabs stop accumulating millions of
native `PerformanceMeasure` objects, eliminating the remaining unbounded
growth

## Linked Issues or Issue Description

No public GitHub issue exists; describing inline per CONTRIBUTING.md →
"Link Issues or Describe Them In-PR", following the bug report template.
This is the root-cause fix for the memory growth chased in #9569 / #9624
/ #9627 / #9701.

**What happened?**

Long-lived browser tabs grew to multiple GB of memory footprint over
hours/days. A heap snapshot of a 12h tab showed **13.2M nodes, of which
12.1M were `PerformanceMeasure`** (vs ~1.0M total nodes on a fresh tab).
Live capture showed **~340 `performance.measure()` calls/sec**, named
after React components with a `detail.devtools` payload — React 19.2's
"Performance Tracks". Nothing ever clears them, so they accumulate
without bound.

**Expected behavior**

A long-lived tab should not accumulate millions of `PerformanceMeasure`
entries. Idle/long-running tabs should hold a bounded footprint.

**Steps to reproduce**

Open the app (React 19.2 production build), leave a tab open with normal
activity, and run `performance.getEntriesByType('measure').length`
periodically — it climbs unbounded (12.3M after ~12h).
`performance.clearMeasures()` drops it to near-zero and frees the
memory.

**Paperclip version or commit**

Branch `fix/react-perf-measure-leak`, off `master` (after #9701).

**Deployment mode**

Local dev (`pnpm dev` build served by the dev instance), web UI. React
19.2.7. Not adapter-specific.

## What Changed

- **`ui/src/lib/perf-measure-reaper.ts` (new)** —
`startPerfMeasureReaper(intervalMs = 10_000)` clears
`performance.clearMeasures()` on a timer and returns a stop function. It
never calls `getEntriesByType('measure')` (which would materialize the
huge buffer). Honors a `window.__paperclipKeepPerfMeasures = true`
opt-out so a developer recording a React Performance Track in DevTools
can keep the entries.
- **`ui/src/main.tsx`** — start the reaper at app boot.
- Only *measures* are cleared — React's tracks pass explicit start/end
times and leave no marks, and the app doesn't use the User Timing API at
all (verified), so nothing else is affected.

## Verification

- **Root cause proven** by heap-snapshot diff: fresh tab ~1.0M nodes vs
12h tab 13.2M nodes, 12.1M of them `PerformanceMeasure`; live capture
showed ~340 measures/sec with `detail.devtools` and React component
names.
- **Fix proven live**: `performance.clearMeasures()` on the aged tab
dropped the buffer from **12,418,266 → 1,500** and reclaimed the memory
(heap `perf.memory` 308 → 269 MB, plus the ~12M native objects, which
are the bulk of the footprint).
- `vitest`: `perf-measure-reaper.test.ts` — interval clearing, `stop()`,
opt-out flag, and no-API no-op. All pass.
- `tsc -b` clean.

## Risks

Very low, client-only.
- Clearing the User Timing measure buffer only affects the DevTools
Performance panel's React track *history*; normal users never consume
it. Developers who want to record it can set
`window.__paperclipKeepPerfMeasures = true`.
- Only `performance.clearMeasures()` is called (not `clearMarks`), so
any mark-based timing elsewhere is untouched; a grep confirmed the app
makes no `performance.mark()/measure()` calls of its own.
- Adds exactly one 10s interval (negligible), and `clearMeasures()` does
not materialize the buffer.

Note: this is a React 19.2 upstream behavior (its performance tracks are
emitted in the production build and never cleared). If React later gates
or clears them, this reaper can be removed.

## Model Used

- **Provider:** Anthropic, via the Claude Code CLI.
- **Model:** Claude Opus 4.8 (`claude-opus-4-8`).
- **Reasoning mode:** Extended thinking enabled.
- **Capabilities used:** tool use (shell, file editing), the Chrome
DevTools MCP to reproduce and profile, and a streaming heap-snapshot
parser to identify the `PerformanceMeasure` accumulation.

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have searched GitHub for duplicate or related PRs and linked
them above (continues #9701; no duplicates)
- [x] I have either (a) linked existing issues with `Fixes: #` / `Closes
#` / `Refs #` OR (b) described the issue in-PR following the relevant
issue template
- [x] I have not referenced internal/instance-local Paperclip issues or
links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip`
URLs)
- [x] My branch name describes the change and contains no internal
Paperclip ticket id or instance-derived details
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [x] I have considered and documented any risks above
- [ ] I have updated relevant documentation to reflect my changes (N/A —
no user-facing docs; rationale documented inline)
- [x] All Paperclip CI gates are green
- [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups
- [x] I will address all Greptile and reviewer comments before
requesting merge

🤖 Generated with [Claude Code](https://claude.com/claude-code)
2026-07-18 14:05:25 -05:00
Nicky Leach 14da75dfc7 feat(codex-local): outbound auth copy-back as home-asset restore contribution (#9788) 2026-07-18 09:13:45 -05:00
936215693c feat(codex-local): add outbound direction to codex-auth-merge decision predicate (#9787)
## Thinking Path

> - Paperclip runs Codex as a sandboxed agent with its own CODEX_HOME;
at the start of each run Paperclip merges the sandbox's auth.json with
the host's so the agent can authenticate to the Codex API
> - The merge uses `codex-auth-merge-decision.cjs`, a small CJS script
that reads two `auth.json` snapshots and exits `10` (use source copy) or
`20` (keep destination copy)
> - Until now the script only handled the **inbound** direction (host →
sandbox) with hard-coded sandbox/host semantics
> - Sandbox-to-host copy-back (**outbound**) requires the same freshness
guard but with swapped roles — and exposing both directions via a flag
requires hard-coding knowledge about which role is "sandbox" and which
is "host" into the predicate itself
> - A cleaner design: the predicate is **direction-agnostic** — it
accepts a `source` path and a `destination` path; the caller decides
direction by which argument it passes first. The script answers one
question: "should destination be replaced by source?" Exit `10` = yes
(use source); exit `20` = no (keep destination)
> - This PR refactors `codex-auth-merge-decision.cjs` to this
source/destination model, removes the `--direction` flag, and extends
coverage with a 15-row source/destination predicate matrix plus updated
extract integration tests

## Linked Issues or Issue Description

No public GitHub issue exists. The underlying problem:

**Context** — Paperclip merges `auth.json` files between sandbox and
host to keep Codex credentials in sync across agent runs. The existing
decision predicate (`codex-auth-merge-decision.cjs`) handled the inbound
direction (host→sandbox) with hard-coded sandbox/host naming. A
copy-back (outbound) direction was needed, but rather than add a
`--direction` flag that hard-codes role knowledge into the predicate,
the design was simplified: the predicate is now **direction-agnostic**,
taking `source` and `destination` paths and answering "replace
destination with source?" The freshness guard is unified: exit `10` only
when source and destination share the same `account_id`, same
subscription-kind, both carry a parseable `last_refresh`, and
`source.last_refresh > destination.last_refresh` (strict). Ties and null
freshness keep the destination copy so a spent single-use refresh token
(openai/codex#15502) is never written back over a valid one.

Related PRs:
- Refs #9785 — Phase 2: relocated the decision predicate from
`adapter-utils` into `codex-local`; this PR builds on that merged change
- Refs #9621 — community PR targeting Codex sandbox auth sync-back via a
different approach; operates on different files (runtime layer vs.
decision script), non-conflicting

## What Changed

-
`packages/adapters/codex-local/src/server/codex-auth-merge-decision.cjs`
— refactored from direction-parameterized (sandbox/host with
`--direction`) to **direction-agnostic source/destination** semantics.
Args: first = source path, second = destination path. Exit `10` (use
source) only when: same `account_id`, same subscription-kind, both carry
a parseable `last_refresh`, and `source.last_refresh >
destination.last_refresh` (strict). Every other case exits `20` (keep
destination). Unknown/extra flags are still rejected with exit `1`. No
token bytes are emitted to stdout/stderr.
- `packages/adapters/codex-local/src/server/codex-auth-merge.test.ts` —
rewritten to source/destination API: 15-row predicate matrix
(strictly-newer→`10`;
tie/older/identity-mismatch/null-refresh/apikey/kind-mismatch/unusable→`20`)
plus token-bytes non-emission guard. The inbound extract integration
suite updated to match.
- Runtime callers (`codex-auth-merge-extract.sh`) already invoke `node
decision <sandbox> <host>` = `(source, destination)` and branch on exit
`10` → keep sandbox, so **no caller changes are needed**.

**Behavioral note:** unifying the two directions under a single "use
source only when strictly fresher" rule means a tie (exact equal
`last_refresh`) now keeps the **destination** for both the inbound and
outbound frames. For inbound restore, this means an exact timestamp tie
keeps the host copy. On a tie, both credentials are the same generation
— preferring the canonical destination (host) copy is more conservative.
This is an intentional consequence of the unified guard.

## Verification

```sh
# From the codex-local package root:
pnpm vitest run src/server/codex-auth-merge.test.ts
# Expected: all predicate rows green (15-row source/destination matrix + token-leak guard)
# Plus: codex-auth-merge-extract integration rows green
```

The test suite drives the `.cjs` as a child process over temporary
`auth.json` fixtures:
- Source/destination predicate matrix (15 rows): strictly-newer→`10`;
tie→`20`; older→`20`; identity-mismatch→`20`; source last_refresh
unparseable→`20`; destination last_refresh unparseable→`20`; apikey
either side→`20`; kind-mismatch→`20`; unusable either side→`20`
- Token-bytes non-emission guard: asserts no auth token bytes appear in
`stdout`/`stderr`
- Inbound extract integration: `codex-auth-merge-extract.sh` end-to-end
rows including tie/identity-mismatch/sandbox-newer cases

## Risks

- **Tie behavior change**: exact `last_refresh` ties now always keep the
destination copy (was: keep-sandbox for inbound). On a tie both
credentials are the same generation; keeping the canonical destination
(host) copy is the more conservative choice. Covered by test assertions.
- **Token non-emission**: `stdout`/`stderr` of the `.cjs` must not echo
credential bytes; covered by the token-bytes non-emission guard test.
- **Unknown/extra flags**: handled with `process.exit(1)` rather than a
silent default, so misconfigured callers surface errors immediately.
- **Caller compatibility**: the only runtime caller,
`codex-auth-merge-extract.sh`, already calls `node decision <sandbox>
<host>` with no flags — compatible with the new source/destination API
with no changes required.
- **Low risk overall**: the script is exercised end-to-end via the
extract integration tests; all paths covered.

## Model Used

Claude claude-sonnet-4-6 (Anthropic, `claude-sonnet-4-6`), 200 k context
window, tool use and agentic code execution enabled. Automated Paperclip
multi-agent system.

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have searched GitHub for duplicate or related PRs and linked
them above
- [x] I have either (a) linked existing issues with `Fixes: #` / `Closes
#` / `Refs #` OR (b) described the issue in-PR following the relevant
issue template
- [x] I have not referenced internal/instance-local Paperclip issues or
links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip`
URLs)
- [x] My branch name describes the change (e.g. `docs/...`, `fix/...`)
and contains no internal Paperclip ticket id or instance-derived details
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [x] All Paperclip CI gates are green
- [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups
- [x] I will address all Greptile and reviewer comments before
requesting merge

---------

Co-authored-by: Harold Kim <harold@paperclip.ing>
Co-authored-by: Paperclip <noreply@paperclip.ing>
canary/v2026.717.0-canary.7
2026-07-17 16:18:39 -05:00
7ffeafad1f refactor(codex-local): relocate Codex auth-merge scripts + decision predicate into the adapter (#9785)
## Thinking Path

> - Paperclip is an open source platform for managing AI agent teams,
with adapter packages providing concrete runtime environments (e.g.
`codex-local` runs a local OpenAI Codex sandbox)
> - `adapter-utils` is the shared utilities package — it should hold
only generic, adapter-agnostic primitives (sandbox lifecycle helpers,
merge logic, type definitions) usable by every adapter
> - Three files lived in `adapter-utils/src/` that are entirely
Codex-specific: `codex-auth-merge-extract.sh` (shell script that
extracts auth tokens), `codex-auth-merge-decision.cjs` (CJS decision
helper), and `codex-auth-merge-scripts.ts` (TypeScript factory that
wires them into the inbound provision seam added in PR #9778)
> - Their presence in a "generic" package violates the adapter isolation
principle and requires a cross-package build step to copy `.sh`/`.cjs`
files into `codex-local/dist/server/` at build time
> - This PR completes Phase 2 of the inbound-seam refactor: move all
three files to `packages/adapters/codex-local/src/server/`, rebase the
TypeScript imports, update `execute.ts` to import locally, move the
Codex-auth tests into a new `codex-local` test file, and fix packaging
so `codex-local` copies its own scripts to `dist/server/`
> - Script bytes are identical after the move; no change to inbound
auth-merge behavior or to which bytes cross the sandbox boundary
> - The benefit is a clean ownership boundary: `adapter-utils` retains
only generic runtime code, and the structural "Codex-free core" test in
the adapter-utils suite validates this invariant going forward

## Linked Issues or Issue Description

No pre-existing public GitHub issue. Describing the underlying problem
inline:

**Problem:** `packages/adapter-utils/src/` contains three files
(`codex-auth-merge-extract.sh`, `codex-auth-merge-decision.cjs`,
`codex-auth-merge-scripts.ts`) consumed exclusively by the `codex-local`
adapter. Their presence in a generic utilities package violates adapter
isolation and requires a cross-package build step (copy `.sh`/`.cjs`
into `codex-local/dist/server/`). The inbound provision seam landed in
PR #9778 routed these through `adapter-utils`; this PR finishes the
relocation.

**Related:** Refs #9778 (Phase 1 — generic asset-lifecycle-seam, now
merged).

## What Changed

- Moved `codex-auth-merge-extract.sh`, `codex-auth-merge-decision.cjs`,
and `codex-auth-merge-scripts.ts` from `packages/adapter-utils/src/` →
`packages/adapters/codex-local/src/server/` (script bytes are unchanged;
`codex-auth-merge-scripts.ts` imports rebased to `adapter-utils`
subpaths for `shellQuote` and `SandboxManagedRuntimeAssetProvision`)
- `packages/adapters/codex-local/src/server/execute.ts`: updated import
of `buildCodexAuthInboundProvision` from `adapter-utils` → local
`./codex-auth-merge-scripts`
- New
`packages/adapters/codex-local/src/server/codex-auth-merge.test.ts` — 5
Codex-auth test rows extracted from
`adapter-utils/src/workspace-restore-merge.test.ts`; the generic test
file stays and no longer references Codex
- `packages/adapters/codex-local/package.json`: build now copies
`.sh`/`.cjs` from `src/server/` into `dist/server/` directly
- `packages/adapter-utils/package.json`: removed the now-obsolete
cross-package copy step for those files

## Verification

```sh
# Type-check both affected packages
pnpm --filter @paperclipai/adapter-utils --filter @paperclipai/adapter-codex-local typecheck

# Codex auth-merge suite (moved tests — 5/5 pass)
pnpm --filter @paperclipai/adapter-codex-local test -- --reporter=verbose codex-auth-merge

# Full adapter-utils suite including the structural "core free of Codex literals" test (243 passed, 4 pre-existing skips)
pnpm --filter @paperclipai/adapter-utils test

# Confirm build copies scripts to dist/server
pnpm --filter @paperclipai/adapter-codex-local build
ls packages/adapters/codex-local/dist/server/*.sh packages/adapters/codex-local/dist/server/*.cjs
```

All of the above were run locally and passed before this PR was opened.

## Risks

Low risk — pure file relocation:

- No change to `.sh` or `.cjs` script bytes; the same content reaches
the sandbox boundary as before
- No behavioral change to inbound auth-merge logic from the sandbox's
perspective
- `adapter-utils`' structural "core free of Codex literals" test now
validates that the relocation is complete and will catch any regression
- Only `codex-local` consumed these files from `adapter-utils`; no other
package in the monorepo imported them from there

## Model Used

Claude Sonnet 4.6 (`claude-sonnet-4-6`) — Anthropic, 200k context
window, tool use, agentic reasoning. Used to author the refactor.
`Co-authored-by: Paperclip <noreply@paperclip.ing>` trailer present on
all commits.

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have searched GitHub for duplicate or related PRs and linked
them above
- [x] I have either (a) linked existing issues with `Fixes: #` / `Closes
#` / `Refs #` OR (b) described the issue in-PR following the relevant
issue template
- [x] I have not referenced internal/instance-local Paperclip issues or
links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip`
URLs)
- [x] My branch name describes the change (e.g. `docs/...`, `fix/...`)
and contains no internal Paperclip ticket id or instance-derived details
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [ ] All Paperclip CI gates are green
- [ ] Greptile is 5/5 with no open P2s, recommendations, or follow-ups
- [x] I will address all Greptile and reviewer comments before
requesting merge

Co-authored-by: Harold Kim <harold@paperclip.ing>
Co-authored-by: Paperclip <noreply@paperclip.ing>
2026-07-17 14:45:36 -05:00
cf5ba4bbea feat(adapter-utils): generic per-asset lifecycle-contribution seam (#9778)
## Thinking Path

> - Paperclip's sandbox managed runtime is responsible for provisioning
the agent's execution environment — it extracts a home directory asset
into the sandbox before the adapter runs.
> - The sandbox runtime core was directly branching on the adapter key
(`codex`) to decide which merge scripts to stage and which merge-extract
command to run, coupling generic infrastructure to a specific adapter's
credential-merge protocol.
> - This makes it harder to add, remove, or modify per-adapter asset
provisioning without touching the runtime core; it also prevents other
adapters from contributing staged files or a custom extract command at
all.
> - The fix is to move the adapter-specific knowledge into the adapter
itself: the asset descriptor gains optional `provision` (stageFiles +
extractCommand) and `restore` contribution fields that any adapter can
populate, and the runtime core consumes them generically.
> - This pull request introduces those contribution fields, wires the
Codex adapter's inbound credential-merge as a `provision` contribution,
and removes the adapter-specific branching from the runtime core.
> - The benefit is a clean seam: the runtime core is now
adapter-agnostic for asset provisioning, the inbound behavior is
unchanged (same merge matrix, same scripts), and other adapters can
attach custom staged files or extract commands without modifying shared
infrastructure.

## Linked Issues or Issue Description

No pre-existing public GitHub issue. Describing the problem inline per
the feature template:

**Problem or motivation**

The sandbox managed-runtime asset provisioning in
`sandbox-managed-runtime.ts` branched directly on the adapter key
(`codex`) to decide which merge scripts to stage and which shell command
to use during asset extraction. This tight coupling prevents other
adapters from customizing their provisioning without modifying the
runtime core, and it means the runtime core must import and know about
adapter-specific merge scripts.

**Proposed solution**

Add an optional `provision` contribution (array of `stageFiles` entries
+ an `extractCommand` string) and an optional `restore` contribution to
the asset descriptor returned by adapters. The runtime core now consumes
these generically — if a `provision` contribution is present, it stages
those files and uses the supplied command; otherwise it falls back to
the default `tar -xf` extraction. The Codex adapter populates the
`provision` contribution where it previously depended on core branching.

**Alternatives considered**

Keeping the adapter-specific logic in the core as a documented
exception; rejected because it makes the seam inextensible.

**Roadmap alignment**

Decoupling — removes a latent coupling between the runtime core and a
specific adapter.

## What Changed

- Added `provision` contribution field (`stageFiles: Array<{src, dest}>`
+ `extractCommand: string`) to the `SandboxManagedRuntimeAsset`
descriptor type in `adapter-utils`.
- Added `restore` contribution field (hook for post-restore logic,
populated in a later phase) to the descriptor.
- Removed adapter-key branching (`if adapterKey === 'codex'`) from the
runtime core in `sandbox-managed-runtime.ts`; the core now reads
`provision.stageFiles` and `provision.extractCommand` generically.
- Extracted Codex-specific merge-script paths and the merge-extract
command into `codex-auth-merge-scripts.ts` in `adapter-utils`; the Codex
adapter's `execute.ts` now attaches them as a `provision` contribution
when it builds its managed-home asset descriptor.
- Updated `execution-target.ts` to pass the extended asset type through
to the adapter call site so the new fields are load-bearing end-to-end.
- Added seam-proving unit tests in `sandbox-managed-runtime.test.ts`:
contribution-less asset uses the default path; a non-adapter asset
round-trips the generic provision+restore seam; a structural assertion
verifies the runtime core carries no Codex-specific string literals.
- Added one test in `workspace-restore-merge.test.ts` confirming the
inbound merge matrix is unaffected.

## Verification

```bash
# Unit tests (20 pass):
npx vitest run packages/adapter-utils/src/sandbox-managed-runtime.test.ts packages/adapter-utils/src/workspace-restore-merge.test.ts

# Type-check both affected packages:
cd packages/adapter-utils && npx tsc --noEmit
cd packages/adapters/codex-local && npx tsc --noEmit

# Structural: runtime core carries no adapter string literals
grep -n 'codex\|auth\.json' packages/adapter-utils/src/sandbox-managed-runtime.ts
# Expected: zero matches
```

## Risks

**Low risk.** This is a behavior-preserving refactor: the inbound
provisioning output (which files get staged, which command runs) is
identical to before, now driven by the adapter-supplied contribution
instead of core branching. The existing inbound merge matrix tests are
the regression guard. No change to which bytes cross the sandbox
boundary. The SSH transport is untouched.

## Model Used

- **Provider:** Anthropic
- **Model:** Claude Sonnet 4.6 (`claude-sonnet-4-6`)
- **Context window:** 200 K tokens
- **Capabilities used:** tool use (file read/edit, bash execution,
Paperclip API), extended reasoning over multi-file TypeScript refactor
- **Mode:** agentic (Paperclip ACPX platform)

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have searched GitHub for duplicate or related PRs and linked
them above
- [x] I have either (a) linked existing issues with `Fixes: #` / `Closes
#` / `Refs #` OR (b) described the issue in-PR following the relevant
issue template
- [x] I have not referenced internal/instance-local Paperclip issues or
links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip`
URLs)
- [x] My branch name describes the change (e.g. `docs/...`, `fix/...`)
and contains no internal Paperclip ticket id or instance-derived details
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [x] All Paperclip CI gates are green
- [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups
- [x] I will address all Greptile and reviewer comments before
requesting merge

---------

Co-authored-by: Paperclip <noreply@paperclip.ing>
Co-authored-by: Harold Kim <harold@paperclip.ing>
canary/v2026.717.0-canary.6
2026-07-17 14:18:01 -05:00
DottaandPaperclip 051ae4d102 feat: restore decision training library and inspector (#9779)
## Thinking Path

> - Paperclip is the open source control plane people use to manage
AI-agent companies and supervise governed work.
> - Decisions capture high-value operator judgment, and the
decision-training foundation merged in #9702 freezes that evidence for
later evaluation and learning.
> - Operators still need the UI from the closed stacked PR #9718 to
intentionally capture examples and inspect the resulting dataset.
> - GitHub automatically closed #9718 when its stacked base branch was
deleted after #9702 merged, leaving the server foundation on `master`
without the corresponding UI.
> - This pull request restores the final UI and its still-required
supporting API fields directly on current `master`, while excluding the
obsolete migration and duplicated server-foundation diffs.
> - The benefit is a reviewable replacement PR that preserves the
completed decision-training workflow without replaying stale stack
history.

## Linked Issues or Issue Description

- Refs #9718
- Refs #9702

## What Changed

- Restored the top-level `/training` library and record inspector with
search, filters, JSONL export, notes editing, and evidence tabs.
- Restored the Decisions-row training affordance and capture drawer,
including preview, provenance, deletion, cache refresh, and approval
consistency behavior.
- Restored the shared types and focused server support needed by the UI
without reintroducing decision-training migrations or the already-merged
server foundation.
- Restored focused UI and attention-service tests from the final #9718
state.
- Credit to the authors and reviewers of #9718; this recovery
transplants their final reviewed delta after the stacked base deletion.

## Verification

- `pnpm exec vitest run ui/src/pages/Training.test.tsx
ui/src/components/DecisionTrainingDrawer.test.tsx
ui/src/components/AttentionQueueRow.test.tsx
server/src/__tests__/attention-service.test.ts
server/src/__tests__/decision-training.test.ts` — 5 files, 48 tests
passed.
- `pnpm --filter @paperclipai/shared typecheck` — passed.
- `pnpm --filter @paperclipai/server typecheck` — passed.
- `pnpm --filter @paperclipai/ui typecheck` — passed.
- `pnpm exec vitest run server/src/__tests__/openapi-routes.test.ts` — 3
tests passed; confirms exact route/OpenAPI parity for the restored
preview endpoint.
- `pnpm check:token-gates` — the restored files are clean; the
repository-wide command currently reports five pre-existing false
positives where comments reference GitHub issue `#9627` as if it were a
color literal.

## Risks

- Low migration risk: this PR contains no database migrations and is
based directly on current `master`.
- The main behavioral risk is cache invalidation across Decisions and
Training views; focused tests cover capture, update, deletion, row
state, and approval refresh behavior.
- The token-gate baseline remains red on unrelated `#9627` comment
references; this PR does not modify those files.

> For core feature work, check [`ROADMAP.md`](ROADMAP.md) first and
discuss it in `#dev` before opening the PR. Feature PRs that overlap
with planned core work may need to be redirected — check the roadmap
first. See `CONTRIBUTING.md`.

## Model Used

- OpenAI Codex, GPT-5.3-Codex, reasoning with repository/tool access and
code execution. Context window not exposed by the runtime.

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have searched GitHub for duplicate or related PRs and linked
them above
- [x] I have either (a) linked existing issues with `Fixes: #` / `Closes
#` / `Refs #` OR (b) described the issue in-PR following the relevant
issue template
- [x] I have not referenced internal/instance-local Paperclip issues or
links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip`
URLs)
- [x] My branch name describes the change (e.g. `docs/...`, `fix/...`)
and contains no internal Paperclip ticket id or instance-derived details
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [x] All Paperclip CI gates are green
- [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups
- [x] I will address all Greptile and reviewer comments before
requesting merge

---------

Co-authored-by: Paperclip <noreply@paperclip.ing>
2026-07-17 13:27:32 -05:00
DottaandPaperclip f7e511a3e5 fix(ui): stop the inbox unread dot from indenting rows (#9767)
## Thinking Path

> - Paperclip is the open source app people use to manage AI agents for
work
> - The Inbox lists issues as rows; unread rows show a small blue
mark-read dot at the leading edge
> - The dot was rendered as an `order-first` flex column that existed
only on unread rows, so it changed each row's leading layout depending
on read state
> - On parent (chevron) rows the dot stacked on top of the collapse
chevron and pushed the whole row's status/title to the right, so unread
rows sat indented relative to their read siblings
> - This PR gives every inbox row a reserved leftmost dot slot so the
dot never changes horizontal alignment
> - The benefit is a stable, non-shifting inbox: read and unread rows
line up at the same x, and the dot no longer crowds the collapse caret

## Linked Issues or Issue Description

No public issue exists. Describing as a bug report:

- **What happened:** In the Inbox, an unread issue row's blue mark-read
dot pushed the row's status/title to the right, so unread rows were
indented relative to read siblings. On parent (collapsible) rows the dot
also overlapped the collapse chevron.
- **Expected behavior:** The unread dot should not change a row's
horizontal alignment. Read and unread rows should line up identically,
and the dot should sit clear of the collapse caret.
- **Steps to reproduce:** Open the Inbox with a mix of read/unread
issues, including a parent issue with children. Observe unread rows
indented vs. read rows, and the dot crowding the chevron on parent rows.
- **Deployment mode:** UI-only (frontend).

Related PR (same inbox area, in flight):
https://github.com/paperclipai/paperclip/pull/9685

## What Changed

- `ui/src/components/IssueRow.tsx`: Add a reserved leftmost dot slot
(`w-4`, desktop) that is present on **all** inbox rows — read and unread
alike — so the mark-read dot renders far-left ahead of any leading
control without shifting content. The dot button markup is now shared
between the desktop reserved slot and the mobile in-flow rendering. The
row is `relative` for slot positioning.
- `ui/src/pages/Inbox.tsx`: Always reserve the leading spacer for
non-chevron rows (removed the special-case that dropped it for unread
rows), since the dot now has its own dedicated slot to the left of the
spacer. This removes the double-indent.
- Mobile keeps the dot in flow as the leading item (no reserved desktop
gutter there).
- Tests: `IssueRow.test.tsx` and `Inbox.test.tsx` updated to assert the
reserved dot slot exists on read and unread rows and that alignment no
longer differs by read state.

## Verification

- `cd ui && NODE_ENV=development npx vitest run
src/components/IssueRow.test.tsx src/pages/Inbox.test.tsx` → 28 tests
pass.
- `cd ui && npm run typecheck` → clean.
- Note: running the full UI suite with `NODE_ENV=production` surfaces
pre-existing `act is not a function` failures unrelated to this change
(React's production bundle strips `act`); they pass under a normal test
env.

## Risks

Low risk. UI-only, scoped to inbox row layout. The reserved slot is
`hidden ... sm:inline-flex`, so mobile layout is unchanged (dot stays in
flow). No API, schema, or telemetry changes.

## Model Used

Claude Opus 4.8 (claude-opus-4-8), 1M context window, extended thinking
+ tool use.

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have searched GitHub for duplicate or related PRs and linked
them above
- [x] I have either (a) linked existing issues with `Fixes: #` / `Closes
#` / `Refs #` OR (b) described the issue in-PR following the relevant
issue template
- [x] I have not referenced internal/instance-local Paperclip issues or
links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip`
URLs)
- [x] My branch name describes the change (e.g. `docs/...`, `fix/...`)
and contains no internal Paperclip ticket id or instance-derived details
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [ ] I have updated relevant documentation to reflect my changes (no
docs affected)
- [x] I have considered and documented any risks above
- [ ] All Paperclip CI gates are green (pending CI)
- [ ] Greptile is 5/5 with no open P2s, recommendations, or follow-ups
(pending review)
- [x] I will address all Greptile and reviewer comments before
requesting merge

Co-authored-by: Paperclip <noreply@paperclip.ing>
canary/v2026.717.0-canary.5
2026-07-17 12:21:28 -05:00
DottaandPaperclip a090c09ee5 feat: add decision training snapshot foundation (#9702)
## Thinking Path

> - Paperclip is the open source control plane people use to manage
AI-agent companies and their work
> - Human approvals, issue interactions, and execution decisions already
capture high-value decision moments
> - Those moments are currently transient and cannot be reused as stable
evaluation or training examples
> - Reusable examples need a server-owned, immutable snapshot so later
comments or runs cannot leak into the recorded state
> - Human notes need to remain editable and auditable without changing
the captured state
> - This pull request adds the database model, snapshot capture service,
API, export format, and attention-feed enrichment for decision training
> - The benefit is a durable, inspectable foundation for evaluating
whether agents can reproduce good human decisions from only the context
available at decision time

## Linked Issues or Issue Description

### Subsystem affected

Cross-cutting (`server/`, `packages/db`, and `packages/shared`).

### Problem or motivation

Paperclip has no durable dataset for converting human decisions into
evaluation-ready examples. Teams need to capture pending or resolved
decisions with the exact issue context, comments, runs, and repository
evidence available at a cutoff, while preventing future context from
leaking into the example.

### Proposed solution

Store immutable, schema-versioned snapshots anchored to durable
interaction, approval, or execution-decision records; keep notes
separately editable with history; expose human-only CRUD, list, and
JSONL export APIs.

### Alternatives considered

Client-generated snapshots were rejected because they duplicate cutoff
logic and cannot reliably enforce no-leakage boundaries. Automatic
outcome backfill was deferred so captured examples remain faithful to
what was known at capture time.

### Roadmap alignment

Supports the roadmap direction of turning completed work and decision
patterns into reusable organizational knowledge.

### Additional context

The implementation records explicit commit-resolution confidence
(`exact`, `nearest_run`, `workspace`, or `none`) so downstream
evaluation can distinguish evidence quality.

## What Changed

- Added the `decision_training_examples` schema and idempotent migration
with company, issue, and source/author indexes.
- Added shared types for decision-training records, notes history, and
versioned snapshots.
- Added a single server-side snapshot capture path with inclusive
comment cutoffs, pre-cutoff run capture, durable decision payloads, and
explicit commit-resolution confidence.
- Added create, list, detail, notes-only update, delete, and JSONL
export routes with human-only write authorization and activity logging
that skips no-op note submissions.
- Added per-user `trainingExampleId` enrichment to attention items.
- Added focused embedded-Postgres tests for cutoff boundaries,
post-cutoff leakage, immutable snapshots, human-only writes, duplicate
prevention, notes history, attention enrichment, and export shape.
- Updated UI test and Storybook attention-item factories for the new
required `trainingExampleId` contract.

## Verification

- `pnpm exec vitest run server/src/__tests__/decision-training.test.ts`
— 10 tests passed.
- `pnpm --filter @paperclipai/db typecheck` — passed, including
migration numbering and safety checks.
- `pnpm --filter @paperclipai/shared typecheck` — passed.
- `pnpm --filter @paperclipai/server typecheck` — passed.
- `pnpm --filter @paperclipai/ui typecheck` — passed.

## Risks

- The migration adds a new table and indexes only; it does not rewrite
existing rows or install resolve-time hooks.
- Snapshot JSON can grow with long comment threads and run histories; v1
intentionally favors complete, inspectable examples over aggressive
truncation.
- Commit SHA resolution is evidence-based and records `exact`,
`nearest_run`, or `none` so downstream consumers can account for
confidence.
- The API is additive, but future UI work must continue to treat the
snapshot as immutable and use notes-only updates.

> For core feature work, check [`ROADMAP.md`](ROADMAP.md) first and
discuss it in `#dev` before opening the PR. Feature PRs that overlap
with planned core work may need to be redirected — check the roadmap
first. See `CONTRIBUTING.md`.

## Model Used

- OpenAI Codex using `gpt-5.3-codex`, with repository tool use, terminal
execution, and code-editing capabilities; context-window size is not
exposed by the runtime.

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have searched GitHub for duplicate or related PRs and linked
them above
- [x] I have either (a) linked existing issues with `Fixes: #` / `Closes
#` / `Refs #` OR (b) described the issue in-PR following the relevant
issue template
- [x] I have not referenced internal/instance-local Paperclip issues or
links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip`
URLs)
- [x] My branch name describes the change (e.g. `docs/...`, `fix/...`)
and contains no internal Paperclip ticket id or instance-derived details
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [ ] All Paperclip CI gates are green
- [ ] Greptile is 5/5 with no open P2s, recommendations, or follow-ups
- [x] I will address all Greptile and reviewer comments before
requesting merge

---------

Co-authored-by: Paperclip <noreply@paperclip.ing>
canary/v2026.717.0-canary.4
2026-07-17 12:17:34 -05:00
1f1f545238 feat: add built-in summarizer and summary slots (#9713)
## Thinking Path

> - Paperclip is the open source control plane people use to organize,
govern, and understand AI-agent work
> - Operators need concise, current status views across projects and
execution workspaces without manually reading every issue and run
> - Paperclip already has auditable issues, documents, built-in agents,
routines, and live run events, but no first-class summary-slot workflow
connecting those systems
> - A built-in Summarizer can generate status prose through ordinary
governed tasks while summary slots provide stable, revisioned
destinations for that output
> - The UI needs to show current summaries, generation progress,
failures, revisions, and streaming draft status in the places operators
already work
> - This pull request adds the end-to-end summary-slot data, API, agent,
orchestration, and UI surfaces behind an experimental setting
> - The benefit is decision-oriented status context that remains
company-scoped, auditable, retryable, and inexpensive by default

## Linked Issues or Issue Description

No public GitHub issue exists for this feature.

**Problem**

Operators currently have to reconstruct project and workspace status by
reading many issues, runs, and comments. This makes it hard to identify
decisions, review queues, recent work, and the next event worth
watching.

**Proposed capability**

Add an experimental summary system with revisioned summary slots for
projects and workspaces, a paused-by-default built-in Summarizer agent,
governed generation tasks, live draft status, and reusable UI cards.

**Expected behavior**

- Summary data remains company-scoped and revisions remain auditable.
- Generation runs through normal issue/agent orchestration and
deduplicates active requests.
- Only the linked built-in Summarizer generation task can author a slot
revision.
- Operators can generate, retry, inspect revisions, and follow draft
progress from project and workspace views.
- The feature remains opt-in and background generation remains paused by
default.

## What Changed

- Added summary-slot schema, idempotent migrations, shared contracts,
validators, API paths, and service tests.
- Added company-scoped summary-slot routes for reading revisions,
requesting generation, and guarded Summarizer writes with activity
logging.
- Added terminal generation finalization, failure reasons, assignment
wakeups, and orchestration integration.
- Added the paused-by-default built-in Summarizer bundle, low-cost
runtime defaults, status-summarization skill, and stale-summary routine.
- Added summary cards, revision selection, retry/configuration states,
live draft streaming, transcript chunk handling, and project/workspace
integrations.
- Updated Claude local parsing for streamed status output and expanded
server, adapter, shared, database, catalog, and UI coverage.

## Verification

- `pnpm -r typecheck`
- `pnpm exec vitest run packages/db/src/summary-slots-schema.test.ts
packages/shared/src/summary-slot.test.ts
server/src/__tests__/summary-slot-routes.test.ts
server/src/__tests__/summary-slots.test.ts
server/src/__tests__/built-in-agents.test.ts
ui/src/components/SummarySlotCard.test.tsx
ui/src/components/SummarySlotCard.status.test.tsx
ui/src/components/useSummaryDraftStream.test.tsx
ui/src/lib/summary-draft-stream.test.ts
ui/src/lib/run-log-chunks.test.ts
ui/src/context/LiveUpdatesProvider.hook.test.tsx` — 113 tests passed
- `pnpm test:run` — server and UI suites passed; one CLI AWS doctor test
was affected by inherited `AWS_ACCESS_KEY_ID`/`AWS_SECRET_ACCESS_KEY`,
and passed when those host credentials were removed
- `pnpm exec vitest run cli/src/__tests__/secrets.test.ts` with
inherited AWS credential variables removed — 8 tests passed
- `pnpm build`
- `pnpm check:token-gates` currently reports nine `#9627` comment
references introduced by current `master`; none are in this PR diff

## Risks

- Database risk is limited by incrementally ordered, idempotent
migrations and migration safety checks.
- Summary generation creates normal issues/runs, so misconfiguration can
produce failed slots; the UI exposes retryable failure reasons and agent
configuration entry points.
- Streaming draft parsing depends on the documented `STATUS:` protocol;
final persisted revisions remain the source of truth.
- The feature is experimental, opt-in, and its built-in routine is
paused with no background token spend by default.

> For core feature work, check [`ROADMAP.md`](ROADMAP.md) first and
discuss it in `#dev` before opening the PR. Feature PRs that overlap
with planned core work may need to be redirected — check the roadmap
first. See `CONTRIBUTING.md`.

## Model Used

- OpenAI GPT-5.3 Codex with reasoning, repository tool use, code
execution, GitHub CLI, and Paperclip control-plane integration. Earlier
branch commits also record Claude model co-authorship where applicable.

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have searched GitHub for duplicate or related PRs and linked
them above
- [x] I have either (a) linked existing issues with `Fixes: #` / `Closes
#` / `Refs #` OR (b) described the issue in-PR following the relevant
issue template
- [x] I have not referenced internal/instance-local Paperclip issues or
links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip`
URLs)
- [x] My branch name describes the change (e.g. `docs/...`, `fix/...`)
and contains no internal Paperclip ticket id or instance-derived details
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [x] All Paperclip CI gates are green
- [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups
- [x] I will address all Greptile and reviewer comments before
requesting merge

---------

Co-authored-by: Paperclip <noreply@paperclip.ing>
Co-authored-by: Claude Opus 4.8 <noreply@anthropic.com>
canary/v2026.717.0-canary.3
2026-07-17 11:03:07 -05:00
DottaandPaperclip 009410164f Fix inbox unread badge alignment (#9685)
## Thinking Path

> - Paperclip is the open source app people use to manage AI agents for
work
> - The Inbox lets operators scan task state and distinguish unread
activity at a glance
> - Read and unread rows should keep the same status-and-title alignment
so the list remains easy to scan
> - The mark-read dot previously participated in flex layout, which
added an extra leading column and visibly indented unread rows
> - Parent rows also needed special handling because their collapse
chevron occupies the normal leading gutter
> - This pull request moves the unread dot out of desktop flex flow,
preserves a consistent leading spacer, and positions parent-row dots
after the chevron
> - The benefit is consistent alignment for read, unread, leaf, nested,
and collapsible parent rows without hiding tree controls

## Linked Issues or Issue Description

### What happened?

In the Inbox, an unread row rendered its status icon and title farther
right than an equivalent read row because the mark-read dot occupied its
own flex column. On a collapsible parent row, the dot also competed with
the leading chevron.
### Expected behavior

Read and unread Inbox rows keep identical status/title alignment while
preserving the unread affordance and any tree-expansion controls.
### Steps to reproduce

  1. Run Paperclip from `master` and open the Inbox at desktop width.
  2. Compare otherwise-equivalent read and unread leaf rows.
  3. Expand a task tree containing an unread depth-zero parent.
4. Observe the unread row indentation and the dot competing with the
parent chevron.
### Paperclip version or commit

Reproduced against the pre-fix `master` parent of this PR.
- **Deployment mode:** Local dev (`pnpm dev`).
- **Installation method:** Built from source.
- **Agent adapters involved:** Not adapter-specific; this is a core
Inbox UI bug.
- **Database mode:** Not database-related.
- **Access context:** Board (human operator).
- **Additional context:** No logs or configuration are involved; the
regression is visual layout behavior covered by focused component/page
tests.

## What Changed

- Render the desktop unread dot as an absolute overlay so it does not
consume row width; retain the existing in-flow behavior on mobile.
- Add an `unreadDotPlacement` option so depth-zero collapsible parents
place the dot after the leading chevron.
- Reserve the same leading spacer for read and unread non-chevron Inbox
rows.
- Expand `IssueRow` and Inbox tests to cover leaf alignment, nested
rows, parent chevrons, fading state, and mobile behavior.

## Verification

- `pnpm exec vitest run ui/src/components/IssueRow.test.tsx
ui/src/pages/Inbox.test.tsx` — 2 files, 30 tests passed.
- `pnpm check:token-gates` — all three token gates clean across 630
scanned files.
- Browser QA (desktop 1280px and mobile 375px) — PASS: read/unread
desktop content measured at identical x positions; nested guides, parent
chevron hit target, fading state, and mobile mark-read hit targets
verified.

## Risks

- Low risk: the change is isolated to Inbox row presentation and has
focused regression coverage.
- The main visual risk is breakpoint-specific placement of the mark-read
dot; tests explicitly cover desktop absolute positioning and mobile
in-flow positioning.

> For core feature work, check [`ROADMAP.md`](ROADMAP.md) first and
discuss it in `#dev` before opening the PR. Feature PRs that overlap
with planned core work may need to be redirected — check the roadmap
first. See `CONTRIBUTING.md`.

## Model Used

- OpenAI Codex `gpt-5.6-sol`, high reasoning effort, with
repository/tool execution. The runtime did not expose a context-window
size.
- Original implementation commit also records assistance from Claude
Opus 4.8.

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have searched GitHub for duplicate or related PRs and linked
them above
- [x] I have either (a) linked existing issues with `Fixes: #` / `Closes
#` / `Refs #` OR (b) described the issue in-PR following the relevant
issue template
- [x] I have not referenced internal/instance-local Paperclip issues or
links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip`
URLs)
- [x] My branch name describes the change (e.g. `docs/...`, `fix/...`)
and contains no internal Paperclip ticket id or instance-derived details
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [ ] All Paperclip CI gates are green
- [ ] Greptile is 5/5 with no open P2s, recommendations, or follow-ups
- [x] I will address all Greptile and reviewer comments before
requesting merge

Co-authored-by: Paperclip <noreply@paperclip.ing>
canary/v2026.717.0-canary.2
2026-07-17 09:20:44 -05:00
5d42382df4 feat(ui): stabilize workspace service controls (#9705)
## Thinking Path

> - Paperclip is the open source control plane people use to coordinate
AI-agent work.
> - Execution workspaces provide the local service loop where operators
start, stop, restart, inspect, and open workspace services.
> - The existing header exposed those actions through separate controls
whose position and labeling changed across runtime states.
> - That movement made the most common development actions harder to
scan and easier to misclick, especially with multiple services or long
URLs.
> - The design therefore uses one fixed-geometry, state-aware control
bar and keeps service-specific detail behind a compact disclosure.
> - This pull request adds that control surface, maps existing runtime
data and every pending mutation into it, and integrates it into the
execution-workspace header without changing server contracts.
> - The benefit is a calmer, predictable service-control loop across
stopped, transitional, running, unhealthy, failed, multi-service, and
narrow-width states.

## Linked Issues or Issue Description

### Subsystem affected

`ui/ — React + Vite board UI`

### Problem or motivation

Execution-workspace service actions move and change shape as runtime
state changes, while URLs and multi-service status compete for header
space. During bulk actions, operators also need every targeted service
to show its transitional state immediately.

### Proposed solution

Use one fixed-geometry, state-aware service control bar in the workspace
header. Map existing runtime records into a stable status, URL, and
actions model, and track each in-flight bulk request independently until
it settles.

### Alternatives considered

Keeping the separate quick-control buttons was rejected because their
geometry changes by state. Showing every service inline was rejected
because it makes the header too wide; per-service detail remains in a
compact disclosure and the Services tab.

### Roadmap alignment

Reviewed `ROADMAP.md`; this focused execution-workspace UI improvement
does not duplicate a listed roadmap initiative.

### Additional context

The published design and state viewer is available at
https://pages.paperclip.ing/pap-14233-workspace-service-controls/.

## What Changed

- Added `WorkspaceServiceControlBar`, a fixed-geometry responsive
control for single- and multi-service runtime states.
- Added 15 Storybook states covering running, stopped, transitions,
unhealthy, failed, disabled, long-URL, mobile, and multi-service
behavior.
- Replaced `WorkspaceRuntimeQuickControls` in the execution-workspace
header with adapters that map live services and all pending requests
into the new control model.
- Added focused unit coverage for service-entry construction, bulk
pending overlays, request resolution, clipboard feedback, and header
integration.

## Verification

- `cd ui && NODE_ENV=development pnpm vitest run
src/components/WorkspaceServiceControlBar.test.tsx
src/components/WorkspaceRuntimeControls.test.tsx
src/pages/ExecutionWorkspaceDetail.test.tsx` — 29 tests passed.
- `NODE_ENV=development pnpm --dir ui typecheck` — passed.
- `pnpm check:token-gates` — all token gates clean.
- Reviewed the Storybook captures for all primary states.

## Risks

- Low-to-moderate UI risk: service controls depend on adapter mapping
from existing runtime records; focused tests cover single-service and
bulk-action mapping and integration paths.
- Multi-service bulk actions intentionally apply to all eligible
services, while per-service actions remain in the disclosure.

> For core feature work, check [`ROADMAP.md`](ROADMAP.md) first and
discuss it in `#dev` before opening the PR. Feature PRs that overlap
with planned core work may need to be redirected — check the roadmap
first. See `CONTRIBUTING.md`.

## Model Used

- OpenAI Codex, exact model ID `gpt-5.3-codex`; runtime-managed context
window; coding/reasoning mode with repository, terminal, Git, GitHub
CLI, and test execution tools.

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have searched GitHub for duplicate or related PRs and linked
them above
- [x] I have either (a) linked existing issues with `Fixes: #` / `Closes
#` / `Refs #` OR (b) described the issue in-PR following the relevant
issue template
- [x] I have not referenced internal/instance-local Paperclip issues or
links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip`
URLs)
- [x] My branch name describes the change (e.g. `docs/...`, `fix/...`)
and contains no internal Paperclip ticket id or instance-derived details
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [x] All Paperclip CI gates are green
- [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups
- [x] I will address all Greptile and reviewer comments before
requesting merge

---------

Co-authored-by: Claude Fable 5 <noreply@anthropic.com>
Co-authored-by: Paperclip <noreply@paperclip.ing>
canary/v2026.717.0-canary.1
2026-07-16 21:07:04 -05:00
DottaandPaperclip b07b2994cc feat: stamp responsible users on activity logs (#9731)
## Thinking Path

> - Paperclip is the control plane people use to manage AI-agent
companies and their work
> - The activity log is the generic audit spine for mutations across the
control plane
> - Activity rows identify agents and runs, but they do not persist the
responsible human upstream
> - Relying only on run joins loses attribution after run pruning and
misses agent API-key actions outside a run
> - This pull request resolves responsible-user attribution when each
activity row is written and stores it directly
> - The benefit is durable, queryable agent audit feeds without
rewriting historical provenance

## Linked Issues or Issue Description

### Problem or motivation

Agent activity records do not persist the responsible user, so
attribution can disappear when runs are pruned and no-run API-key
mutations cannot be attributed correctly.

### Proposed solution

Resolve attribution for each new activity row from the run, related
issue, active agent API key, or company default, in that order, and
persist the result directly.

### Alternatives considered

Read-time joins alone were rejected because pruned runs lose durable
attribution and out-of-run agent-key actions have no run to join.
Historical backfill was rejected because it would invent provenance.

### Roadmap alignment

This strengthens the durable audit-trail direction described in
`ROADMAP.md` without adding a new product surface.

## What Changed

- Added nullable `activity_log.responsible_user_id` plus
company/agent/time and company/responsible-user/time indexes.
- Added an idempotent forward-only migration with no historical
backfill.
- Added centralized write-time resolution: heartbeat run → issue
attribution → active agent API key → company default.
- Propagated authenticated API-key IDs through existing request-backed
`logActivity()` calls.
- Added unit coverage for every fallback and an embedded-Postgres
assertion for the no-run API-key stamping path.

## Verification

- `pnpm --filter @paperclipai/db typecheck`
- `pnpm --filter @paperclipai/server typecheck`
- `pnpm --filter @paperclipai/server exec vitest run
src/__tests__/activity-log-responsible-user.test.ts
src/__tests__/authz-company-access.test.ts`
- Initial focused verification: 25 tests passed; migration safety
passed.
- Follow-up regression verification: 54 focused
attribution/company-skill/environment/issue-tree/tool-gateway tests
passed; server typecheck passed.
- GitHub: full build, typecheck, server shards, serialized suites, e2e,
security, and policy checks passed.

## Risks

- Adding two indexes to an existing large table can hold a write lock
while the transactional migration runs. The migration safety
suppressions document why `CONCURRENTLY` is unavailable under the
current Drizzle migration runner.
- Historical rows remain nullable by design; this avoids inventing
provenance and keeps the migration forward-only.
- API-key attribution requires request-backed activity call sites to
pass the authenticated key ID; this PR mechanically updates the existing
actor-based activity calls and covers the no-run path with integration
testing.

> For core feature work, check [`ROADMAP.md`](ROADMAP.md) first and
discuss it in `#dev` before opening the PR. Feature PRs that overlap
with planned core work may need to be redirected — check the roadmap
first. See `CONTRIBUTING.md`.

## Model Used

- OpenAI Codex, `gpt-5.4`; context-window size was not exposed by the
runtime. Medium reasoning with repository editing, terminal execution,
and test execution capabilities was used.

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have searched GitHub for duplicate or related PRs and linked
them above
- [x] I have either (a) linked existing issues with `Fixes: #` / `Closes
#` / `Refs #` OR (b) described the issue in-PR following the relevant
issue template
- [x] I have not referenced internal/instance-local Paperclip issues or
links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip`
URLs)
- [x] My branch name describes the change (e.g. `docs/...`, `fix/...`)
and contains no internal Paperclip ticket id or instance-derived details
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [x] All Paperclip CI gates are green
- [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups
- [x] I will address all Greptile and reviewer comments before
requesting merge

---------

Co-authored-by: Paperclip <noreply@paperclip.ing>
canary/v2026.717.0-canary.0
2026-07-16 20:54:55 -05:00
DottaandPaperclip 53f09cb818 fix: prevent duplicate task creation and recovery loops (#9648)
## Thinking Path

> - Paperclip is the open source control plane people use to coordinate
AI-agent companies
> - Agents, routines, productivity review, and recovery services can all
create or re-trigger work
> - Repeated heartbeats or catch-up cycles can produce duplicate tasks
or repeat recovery actions before prior work is visible
> - The base duplicate-create and routine catch-up coalescing work has
now landed on `master` via related PRs while this PR was being prepared
> - This pull request carries the remaining hardening: bounded
idempotency retention, recovery cooldown/throttle fixes,
productivity-review query batching and ordering fixes, and regression
coverage
> - The benefit is fewer duplicate tasks, safer retries, and enough
provenance to diagnose any future recurrence

## Linked Issues or Issue Description

Agents can retry issue creation after ambiguous responses or
independently recreate the same child title, while recovery and
short-interval routine catch-up paths can repeat before prior work
settles. This can produce visible duplicate tasks and makes the
originating heartbeat difficult to identify.

Related work: Refs #8356 for caller-supplied issue-create idempotency
and Refs #9224 for plugin-scoped issue-create idempotency. Prior related
PR: #6936. The base issue-create deduplication and routine catch-up
coalescing pieces have since landed on `master` via #9650 and #9649;
this PR remains as the follow-up hardening stack on top of those
changes.

## What Changed

- Add 7-day retention for issue-create idempotency claims with indexed,
batch-limited cleanup so the claim table does not grow forever.
- Preserve recovery cooldown intent after terminal recovery actions are
closed, and throttle repeated source-scoped recovery work.
- Batch productivity-review source-activity checks to avoid repeated
per-source queries while keeping the no-action suppression behavior.
- Order productivity-review no-action streak windows by review creation
time, matching the window semantics even when completion timestamps are
out of order.
- Preserve generated issue IDs in route mocks used by backlog/assignment
contract tests.
- Document PR-gardening task deduplication expectations in the company
skill.
- Add focused regression tests for idempotency retention, liveness
recovery cooldowns, and productivity-review
batching/suppression/ordering behavior.

## Verification

- `pnpm --filter @paperclipai/server typecheck` — passed on latest head.
- `pnpm exec vitest run --project @paperclipai/server
server/src/__tests__/productivity-review-service.test.ts
server/src/__tests__/issue-create-deduplication-routes.test.ts
--reporter verbose` — 2 files, 23 tests passed on latest head.
- `pnpm --filter @paperclipai/adapter-utils build && pnpm exec vitest
run --project @paperclipai/adapter-utils --reporter dot` — 30 files
passed, 476 tests passed, 8 skipped.
- `pnpm build` — passed on latest head.
- `pnpm -r typecheck` — passed on the rebased head before the final
productivity-review ordering commit; the latest touched server code is
covered by the server typecheck above.
- `pnpm check:token-gates` — passed.
- `pnpm test:run` — progressed through server, UI, CLI, shared,
skills-catalog, and DB sections, then exposed an adapter-utils
compiled-test fingerprint mismatch before rebuilding adapter-utils; the
adapter-utils project passed after rebuild, and the GitHub split PR
checks passed on the pushed head.

## Risks

- Caller-supplied idempotency replay is now bounded to 7 days; reusing
an old key after retention can create new work, which matches
retry-oriented idempotency semantics.
- Recovery and productivity-review timing changes may suppress redundant
follow-up work; focused tests cover the intended boundaries.
- Advisory locking and idempotency cleanup rely on PostgreSQL-compatible
transaction semantics already used by the production data layer.
- The migration extends the private claim table indexes without
rewriting existing issue rows.

> For core feature work, check [`ROADMAP.md`](ROADMAP.md) first and
discuss it in `#dev` before opening the PR. Feature PRs that overlap
with planned core work may need to be redirected — check the roadmap
first. See `CONTRIBUTING.md`.

## Model Used

- OpenAI Codex based on GPT-5, with reasoning, repository editing,
shell/tool execution, and test execution. Exact model ID and
context-window size are not exposed by the runtime.

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have searched GitHub for duplicate or related PRs and linked
them above
- [x] I have either (a) linked existing issues with `Fixes: #` / `Closes
#` / `Refs #` OR (b) described the issue in-PR following the relevant
issue template
- [x] I have not referenced internal/instance-local Paperclip issues or
links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip`
URLs)
- [x] My branch name describes the change (e.g. `docs/...`, `fix/...`)
and contains no internal Paperclip ticket id or instance-derived details
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [x] All Paperclip CI gates are green
- [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups
- [x] I will address all Greptile and reviewer comments before
requesting merge

---------

Co-authored-by: Paperclip <noreply@paperclip.ing>
canary/v2026.716.0-canary.21
2026-07-16 17:00:53 -05:00
DottaandPaperclip a015ac7a57 fix(ui): allow interrupting queued issue runs (#9725)
## Thinking Path

> - Paperclip is the open source app people use to manage AI agents for
work
> - The issue detail chat lets operators send messages while an issue
run is live
> - Messages sent during a live run are shown as queued and can expose
an interrupt action
> - The UI only treated running runs as interruptible, even though
queued runs can also own the pending message
> - That mismatch hid the interrupt button after sending a message while
the agent run was still queued
> - This pull request treats queued and running issue runs as
interruptible and preserves the exact target run on optimistic and
persisted comments
> - The benefit is that operators can immediately interrupt the queued
run their message is waiting behind

## Linked Issues or Issue Description

- **What happened:** Sending a message while an issue-owned agent run
was in `queued` state showed the message as pending but did not make the
interrupt action available.
- **Expected behavior:** A message queued behind either a queued or
running issue run should retain that run as its interrupt target and
expose the interrupt control.
- **Steps to reproduce:** Open an in-progress issue with an issue-owned
run still queued, send a chat message, and inspect the queued message
actions.
- **Version/commit:** Reproduced against the pre-change `master` UI
behavior.
- **Deployment mode:** Paperclip board UI with a queued issue execution
run.

## What Changed

- Generalized issue-run resolution from running-only to
queued-or-running interruptible runs.
- Used the interruptible run consistently for optimistic queue metadata,
persisted comment decoration, cancel controls, and targeted
interruption.
- Added a regression test that sends a message behind a queued run and
verifies the exact run is cancelled.

## Verification

- `pnpm exec vitest run ui/src/pages/IssueDetail.test.tsx` — 44 tests
passed.
- `pnpm --filter @paperclipai/ui typecheck` — passed.
- `pnpm check:token-gates` — repository-wide gate currently reports nine
pre-existing `#9627` comment literals; this patch adds no token literals
or gate violations.

## Risks

- Low risk: the behavior change is limited to selecting queued
issue-owned runs as valid interrupt targets in the existing chat flow.
- Cancellation remains targeted by run ID, and the regression test
verifies the queued run ID is preserved through optimistic and persisted
comment states.

> For core feature work, check [`ROADMAP.md`](ROADMAP.md) first and
discuss it in `#dev` before opening the PR. Feature PRs that overlap
with planned core work may need to be redirected — check the roadmap
first. See `CONTRIBUTING.md`.

## Model Used

- OpenAI `gpt-5.4` via Codex CLI; context-window size is not exposed by
this runtime; reasoning-enabled with repository, shell, GitHub CLI, and
code-execution tools.

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have searched GitHub for duplicate or related PRs and linked
them above
- [x] I have either (a) linked existing issues with `Fixes: #` / `Closes
#` / `Refs #` OR (b) described the issue in-PR following the relevant
issue template
- [x] I have not referenced internal/instance-local Paperclip issues or
links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip`
URLs)
- [x] My branch name describes the change (e.g. `docs/...`, `fix/...`)
and contains no internal Paperclip ticket id or instance-derived details
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [x] All Paperclip CI gates are green
- [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups
- [x] I will address all Greptile and reviewer comments before
requesting merge

Co-authored-by: Paperclip <noreply@paperclip.ing>
canary/v2026.716.0-canary.20
2026-07-16 16:55:51 -05:00
59fb27ff79 feat(inbox): let agents safely tidy user inboxes (#9724)
## Thinking Path

> - Paperclip is the open source control plane people use to manage
AI-agent companies and their work
> - The inbox is a per-user attention view, so archiving an item must
not alter the underlying issue, assignment, or status
> - Agents can help responsible users tidy resolved work only when the
action is company-scoped, reversible, policy-controlled, and fully
attributable
> - The database and authorization foundations landed in #9654 and
#9658, but the end-to-end archive routes, audit details, agent workflow
guidance, and operator UI still need to ship together
> - Separate stacked PRs #9659 and #9661 made the complete behavior
harder to review and land as one coherent capability
> - This pull request consolidates the remaining server,
shared-contract, documentation, skill, and UI work on top of current
master
> - The benefit is a single reviewable change that lets agents safely
archive responsible-user inbox items and lets users control or undo that
behavior

## Linked Issues or Issue Description

### Subsystem affected

Cross-cutting inbox management across shared contracts, server
authorization/routes/services, shipped agent skills, and the board UI.

### Problem or motivation

Agents may complete work whose issue remains in the responsible user's
Mine inbox. Existing board-user archive behavior does not provide the
agent-facing policy endpoints, target resolution, heartbeat-run
attribution, typed denials, conservative workflow guidance, or UI needed
for safe agent-managed cleanup.

### Proposed solution

Allow authorized agents to archive or unarchive responsible-user inbox
items under the user's open, allowlist, or disabled policy; preserve
actor/agent/run attribution in issue detail and activity records; expose
policy controls and agent archive attribution in the UI; and document
conservative cleanup rules for agents and PR gardening.

### Alternatives considered

- Reuse generic issue mutation permissions: rejected because inbox state
belongs to a target user and requires user-scoped authorization.
- Automatically archive every completed or closed item: rejected because
completion signals can still require human review or a decision.
- Keep the backend and UI as separate stacked PRs: superseded by this
consolidated PR so the complete user-visible behavior can be reviewed
and verified together.

### Related work

- Builds on merged foundations #9654 and #9658.
- Supersedes the remaining stacked changes in #9659 and #9661.
- `ROADMAP.md` has no overlapping inbox archive or inbox authorization
initiative.

## What Changed

- Added shared inbox-agent policy types and validators plus
company-scoped self-service policy routes and OpenAPI coverage.
- Enabled agent archive/unarchive mutations with responsible-user
targeting, policy enforcement, typed failures, attribution, idempotency,
and detailed activity auditing.
- Returned agent archive attribution in issue detail and documented
reversible inbox cleanup semantics in the implementation spec and
Paperclip skill.
- Added conservative PR-gardening inbox tidy guidance that keeps GitHub
access read-only and avoids archiving work that still needs human
action.
- Added the Profile settings policy control and Issue Properties
attribution/unarchive UI with focused component coverage and narrow-pane
handling.

## Verification

- `pnpm exec vitest run
server/src/__tests__/inbox-archive-routes.test.ts
server/src/__tests__/inbox-agent-policy-routes.test.ts
server/src/__tests__/authorization-service.test.ts
server/src/__tests__/openapi-routes.test.ts
ui/src/components/InboxAgentPolicyControl.test.tsx
ui/src/components/IssueProperties.test.tsx` — 110 passed.
- `pnpm --filter @paperclipai/db exec vitest run
src/inbox-archive-agent-policies-migration.test.ts` — 1 passed.
- `node --test
.agents/skills/pr-gardening/scripts/pr-gardening.test.mjs` — 9 passed.
- `pnpm --filter @paperclipai/server typecheck` — passed.
- `pnpm --filter @paperclipai/ui typecheck` — passed.
- `pnpm check:token-gates` — changed files are clean; the
repository-wide command currently reports nine unrelated pre-existing
`#9627` literals outside this PR's diff.

## Risks

- Agent inbox mutations broaden an existing endpoint path, so
authorization and target resolution must remain fail-closed; focused
route and authorization tests cover allowed and denied paths.
- Archive state affects only the responsible user's inbox presentation
and remains reversible; it does not mutate issue status, assignment, or
visibility.
- The UI policy defaults to the existing open behavior, while allowlist
and disabled modes can reduce agent access.
- This PR intentionally builds on #9654 and #9658 and contains no new
migration number or modification to an already-applied migration.

> For core feature work, check [`ROADMAP.md`](ROADMAP.md) first and
discuss it in `#dev` before opening the PR. Feature PRs that overlap
with planned core work may need to be redirected — check the roadmap
first. See `CONTRIBUTING.md`.

## Model Used

- OpenAI Codex using GPT-5.4, medium reasoning, repository tool use,
shell execution, code review, and test execution.

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have searched GitHub for duplicate or related PRs and linked
them above
- [x] I have either (a) linked existing issues with `Fixes: #` / `Closes
#` / `Refs #` OR (b) described the issue in-PR following the relevant
issue template
- [x] I have not referenced internal/instance-local Paperclip issues or
links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip`
URLs)
- [x] My branch name describes the change
(`feat/inbox-agent-archive-complete`) and contains no internal Paperclip
ticket id or instance-derived details
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [x] All Paperclip CI gates are green
- [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups
- [x] I will address all Greptile and reviewer comments before
requesting merge

---------

Co-authored-by: Paperclip <noreply@paperclip.ing>
Co-authored-by: Claude Opus 4.8 <noreply@anthropic.com>
2026-07-16 16:49:18 -05:00
DottaandPaperclip 89af58b6dc Clarify task-level model overrides in issue properties (#9710)
## Thinking Path

> - Paperclip is the control plane where operators configure and inspect
AI-agent work.
> - An issue can override the assigned agent's primary model for that
task.
> - The issue-properties UI labeled that per-task setting as `Custom ·
<model>`, which could be read as a property of the model rather than a
replacement of the agent default.
> - Operators need the UI to distinguish the agent's primary model from
an issue-specific override at both the collapsed summary and selection
point.
> - This pull request renames the lane presentation to `Override` and
adds concise provenance text without changing the stored lane value or
adapter configuration behavior.
> - The benefit is that operators can immediately understand which model
will run and why it differs from the agent default.

## Linked Issues or Issue Description

No matching public GitHub issue was found. Related implementation work:
#9700 moved Codex ACPX model configuration to startup and is already on
`master`; #9355 also addresses ACP session-config rejection behavior.
Those PRs concern execution behavior, while this PR is limited to
clarifying the issue-level override UI.

Bug report details:

- **What happened?** The issue-properties Model row displayed `Custom ·
<model>` for a task-level
`assigneeAdapterOverrides.adapterConfig.model`. Operators could misread
`Custom` as describing the model itself and could not see that the value
replaced the agent's primary model for this issue.
- **Expected behavior:** The UI should explicitly identify a task-level
model as an override and explain that it replaces the agent's primary
model for the issue.
- **Steps to reproduce:** Configure an agent with a primary model, set a
different model on an issue, and inspect the Model row and model picker
in Issue Properties.
- **Paperclip version or commit:** Reproduced on the pre-change branch
derived from current `master`.
- **Deployment mode:** Local development or any deployment using the
board UI.
- **Installation method:** Built from source.
- **Agent adapters involved:** Adapter-agnostic; any adapter exposing
model selection.
- **Database mode:** Not database-related.
- **Access context:** Board operator viewing issue properties.
- **Relevant logs or output:** Not applicable; this is a presentation
ambiguity.
- **Relevant config:** An issue-level
`assigneeAdapterOverrides.adapterConfig.model` differing from the
assigned agent's primary model.
- **Additional context:** The internal lane identifier remains `custom`;
only user-facing copy and explanatory text change.
- **Privacy checklist:** No private instance links, internal ticket IDs,
secrets, usernames, or local paths are included.

## What Changed

- Renamed the collapsed issue model label from `Custom · <model>` to
`Override · <model>` and added a provenance tooltip.
- Renamed the model-picker lane from `Custom` to `Override` and added
explanatory subtext at the selection point.
- Updated the Issue Properties component test to assert the new label.
- Added an isolated Storybook fixture for the task model override state
so visual review has a stable target.

## Verification

- `pnpm exec vitest run ui/src/components/IssueProperties.test.tsx` — 43
tests passed.
- `pnpm --filter @paperclipai/ui typecheck` — passed.
- `git diff --check public-gh/master...HEAD` — passed.
- `pnpm check:token-gates` — the changed files are clean, but the
repo-wide command currently reports nine unrelated `#9627` comment
references already present on `master` as color literals.

## Risks

- Low risk: this changes display strings and explanatory copy only;
override storage, lane identifiers, API contracts, and execution
behavior are unchanged.
- The global token-gate false positive may also appear in CI until the
unrelated `#9627` references on `master` are allowlisted or the scanner
ignores issue-number comments.

> For core feature work, check [`ROADMAP.md`](ROADMAP.md) first and
discuss it in `#dev` before opening the PR. Feature PRs that overlap
with planned core work may need to be redirected — check the roadmap
first. See `CONTRIBUTING.md`.

## Model Used

OpenAI Codex coding agent assisted this PR preparation using medium
reasoning, repository-aware shell execution, Git/GitHub tooling, and
local test/typecheck execution. The hosted runtime did not expose an
exact model ID or context-window size to this session.

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have searched GitHub for duplicate or related PRs and linked
them above
- [x] I have either (a) linked existing issues with `Fixes: #` / `Closes
#` / `Refs #` OR (b) described the issue in-PR following the relevant
issue template
- [x] I have not referenced internal/instance-local Paperclip issues or
links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip`
URLs)
- [x] My branch name describes the change (e.g. `docs/...`, `fix/...`)
and contains no internal Paperclip ticket id or instance-derived details
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [x] All Paperclip CI gates are green
- [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups
- [x] I will address all Greptile and reviewer comments before
requesting merge

---------

Co-authored-by: Paperclip <noreply@paperclip.ing>
canary/v2026.716.0-canary.19
2026-07-16 15:53:03 -05:00
DottaandPaperclip 52aea90263 feat: organize skills with nested folders and My Skills (#9633)
## Thinking Path

> - Paperclip is the open source control plane people use to organize
and govern AI-agent companies
> - Company skills are durable resources that users browse, import,
assign, and maintain over time
> - A flat skill list plus tags does not provide a stable location or
hierarchy for personal, company, project-imported, and bundled skills
> - Folder paths need to be canonical, company-scoped, safe to move, and
preserved across re-imports without changing skill IDs
> - The `/skills` UI also needs traversal, breadcrumbs, move/create
flows, and a dedicated My Skills namespace that work on desktop and
mobile
> - This pull request adds the folder data model and APIs, reserved-root
lifecycle, project import behavior, and the folder-first skills
experience
> - The benefit is a predictable filesystem-like organization model
while tags remain available for cross-cutting classification

## Linked Issues or Issue Description

Refs #9619 — the reviewed folder foundation was intentionally closed and
folded into this combined feature PR.
Refs #9026 — earlier flat-folder attempt superseded by this integrated
implementation.
Refs #3281 — related skill organization proposal; this PR uses canonical
persisted folders rather than deriving groups from skill keys, and does
not add hidden-skill behavior.

**Feature request**

- **Problem:** Skills currently lack a canonical hierarchical location,
making personal skills, project imports, bundled skills, and
company-authored skills difficult to traverse and manage at scale.
- **Proposed behavior:** Add nested company-scoped folders with stable
paths, reserved My/Projects/Bundled roots, subtree queries, safe
move/create operations, and a folder-first `/skills` library UI.
- **Import behavior:** New project scans file skills under
`projects/<project-slug>`; later imports update content without
overriding a user-selected folder.
- **Alternatives considered:** Tags alone remain useful for
cross-cutting classification, but they do not provide canonical
location, nesting, reserved namespaces, or stable import placement.
- **Roadmap alignment:** Extends the completed Skills Manager and
Scheduled Routines capabilities without duplicating an active roadmap
item.

## What Changed

- Adds `folders` persistence for routine and skill folders, nested
canonical paths, parent/slug/system-key fields, migration backfills, and
reapply-safe migrations `0174`–`0175` after current master migrations.
- Adds company-scoped folder CRUD, cycle/depth/namespace validation,
reserved My/Projects/Bundled lifecycle, item moves, subtree filtering,
and folder paths on skill results.
- Preserves project-import placement: first import files into the
project folder, while re-import keeps user-owned placement and stable
skill IDs.
- Adds the `/skills` folder tree rail, tags facet, breadcrumbs,
subfolder browser, move/new-folder dialog, canonical detail location,
inline tag editing, and folder-aware Studio creation.
- Keeps bundled skills read-only even when their source metadata is
incomplete by detecting the reserved Bundled folder and hiding
selection/move actions.
- Extends routine folder UI and OpenAPI coverage, and adds regression
tests across migrations, services, routes, tree helpers, pages, and
Studio creation.

## Verification

- `pnpm exec vitest run
packages/db/src/nested-skill-folders-migration.test.ts
server/src/__tests__/folders-routes.test.ts
server/src/__tests__/folders-service.test.ts
server/src/__tests__/company-skills-service.test.ts
server/src/__tests__/routines-service.test.ts
ui/src/components/folders/FolderControls.test.tsx
ui/src/components/folders/SkillFolderTree.test.tsx
ui/src/components/folders/skill-folder-tree.test.ts
ui/src/pages/CompanySkills.test.tsx ui/src/pages/Routines.test.tsx
ui/src/pages/SkillStudio.test.tsx
ui/src/lib/company-skill-routes.test.ts ui/src/lib/skill-create.test.ts`
— 13 files, 192 tests passed.
- `pnpm exec vitest run ui/src/pages/CompanySkills.test.tsx
ui/src/components/folders/SkillFolderTree.test.tsx` — 2 files, 20 tests
passed after preserving the existing PR's bundled-skill fixes.
- `pnpm -r typecheck` — passed for all workspace packages.
- `pnpm test:run` — passed in an isolated CI-like environment with
inherited Paperclip runtime identity and static AWS credential variables
removed.
- `pnpm build` — production build passed for all workspace packages.
- Greptile iteration 2 — 5/5 confidence with zero unresolved threads on
commit `ff2d67aa71`.
- Latest-head GitHub checks — all success, neutral, or skipped; PR is
mergeable with a clean merge state.
- `pnpm check:token-gates` — reports nine existing `#9627` comment false
positives already present on `master`; this PR introduces no new token
violation.

## Risks

- **Migration/backfill:** `0174` creates the foundation and `0175` adds
nested/reserved semantics. Both are ordered after current master
migration `0173`, are covered by numbering/safety checks, and are
designed to be reapply-safe.
- **Reserved namespaces:** My, Projects, and Bundled roots are
service-managed. Regression coverage prevents namespace squatting,
cross-company folder use, bundled writes, cycles, and excessive depth.
- **Behavioral change:** Project scans choose a project folder only on
initial creation; existing skills deliberately retain their current
folder during refresh.
- **UI scope:** The folder rail applies to the Installed library;
Catalog retains the discovery-oriented category sidebar.

> For core feature work, check [`ROADMAP.md`](ROADMAP.md) first and
discuss it in `#dev` before opening the PR. Feature PRs that overlap
with planned core work may need to be redirected — check the roadmap
first. See `CONTRIBUTING.md`.

## Model Used

- OpenAI `gpt-5.5` in Codex CLI, medium reasoning mode; runtime did not
expose a context-window value. Used repository/file tools, terminal
execution, Git/GitHub operations, test execution, and code editing.

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have searched GitHub for duplicate or related PRs and linked
them above
- [x] I have either (a) linked existing issues with `Fixes: #` / `Closes
#` / `Refs #` OR (b) described the issue in-PR following the relevant
issue template
- [x] I have not referenced internal/instance-local Paperclip issues or
links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip`
URLs)
- [x] My branch name describes the change (e.g. `docs/...`, `fix/...`)
and contains no internal Paperclip ticket id or instance-derived details
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [x] All Paperclip CI gates are green
- [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups
- [x] I will address all Greptile and reviewer comments before
requesting merge

---------

Co-authored-by: Paperclip <noreply@paperclip.ing>
canary/v2026.716.0-canary.18
2026-07-16 15:50:45 -05:00
Nicky LeachandPaperclip 1d2b6af5ac fix(tests): stabilize heartbeat cleanup for tsx update (#9573)
## Thinking Path

> - Paperclip is an open-source platform for orchestrating AI agents,
built on an embedded-Postgres server running a heartbeat loop to advance
agent work.
> - The server test suite exercises heartbeat liveness escalation and
retry scheduling logic against a real embedded database; tests create
and tear down full database state across every case.
> - Dependabot PR #9480 bumps `tsx` from 4.22.4 to 4.23.1. The new
version exposed two fragile teardown patterns in the heartbeat tests
that caused failures.
> - The first problem: `TRUNCATE TABLE "companies" CASCADE` in the
liveness-escalation teardown clashes with FK constraints when child
tables (e.g. `heartbeat_run_events`, `issue_tree_hold_members`) hold
rows that tsx 4.23.1's changed execution order materialises before the
CASCADE runs.
> - The second problem: the retry-scheduling test duplicated a 10-line
delete block inline at two mid-test reset points; one copy deleted
`heartbeat_run_events` after `heartbeat_runs` (wrong FK order) and
`activityLog` was deleted twice.
> - A third concern was identified during review: several `GET
/tool-connections/:connectionId` routes called `assertCompanyAccess`
before checking whether the actor has access at all, leaking 403
(existence oracle) instead of 404. This is fixed in this PR.
> - This PR updates the three `tsx` version pins to `^4.23.1`, replaces
the TRUNCATE with explicit child-to-parent deletes, centralises the
retry cleanup into a shared `cleanupRetryFixture()` helper, and adds
`hasCompanyAccess` pre-checks before the four affected
`assertCompanyAccess` calls in `tool-access.ts`.
> - The benefit is CI green on tsx 4.23.1, cleaner non-duplicated
teardown code across both test files, and no cross-tenant existence
leakage on tool-connection routes.

## Linked Issues or Issue Description

Refs #9480 (`tsx` 4.22.4 → 4.23.1 dependabot bump whose CI failures this
fixes)

## What Changed

- **cli/package.json**, **packages/db/package.json**,
**server/package.json**: bump `tsx` dev-dependency range from `^4.22.4`
to `^4.23.1` so package manifests agree with the lockfile update landing
in #9480. `pnpm-lock.yaml` is left untouched — GitHub Actions owns
lockfile regeneration.
- **heartbeat-issue-liveness-escalation.test.ts**: replace `TRUNCATE
TABLE "companies" CASCADE` with explicit FK-ordered deletes. The new
chain adds `heartbeatRunEvents`, `issueTreeHoldMembers`,
`agentRuntimeState`, and `companySkills` before their respective parent
tables.
- **heartbeat-retry-scheduling.test.ts**: extract the repeated teardown
block into a `cleanupRetryFixture()` helper; call it from `afterEach`
and the two mid-test resets; fix `heartbeatRunEvents` deleted before
`heartbeatRuns` (parent-child FK order); remove the duplicate
`activityLog` delete.
- **server/src/routes/tool-access.ts**: add `hasCompanyAccess`
pre-checks before `assertCompanyAccess` on four `GET
/tool-connections/:connectionId` and `GET
/tool-profiles/:profileId/new-tools` routes. Returns 404 instead of 403
when the actor cannot access the resource, closing the cross-tenant
existence oracle.

## Verification

```sh
# Focused test run (49 tests, all pass)
pnpm exec vitest run \
  server/src/__tests__/heartbeat-retry-scheduling.test.ts \
  server/src/__tests__/heartbeat-issue-liveness-escalation.test.ts

pnpm --filter @paperclipai/server typecheck   # pass
pnpm -r typecheck                              # pass
pnpm build                                     # pass
```

Full `pnpm test:run` was also attempted: server suite (242 files, 2 243
tests) and UI suite (310 files, 2 536 tests) both passed. A backup-dir
assertion in `src/__tests__/onboard.test.ts` failed but is unrelated to
this diff — it expects a temp `PAPERCLIP_HOME` but receives the global
instance path.

## Risks

Low risk. Changes are limited to test teardown logic, dev-dependency
version pins, and existence-oracle guard additions on read-only
tool-connection routes. No new business logic or production data paths
are introduced.

## Model Used

Claude Sonnet 4.6 (`claude-sonnet-4-6`, 200 k context, tool use, agentic
coding)

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have searched GitHub for duplicate or related PRs and linked
them above
- [x] I have either (a) linked existing issues with `Fixes: #` / `Closes
#` / `Refs #` OR (b) described the issue in-PR following the relevant
issue template
- [x] I have not referenced internal/instance-local Paperclip issues or
links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip`
URLs)
- [x] My branch name describes the change (e.g. `docs/...`, `fix/...`)
and contains no internal Paperclip ticket id or instance-derived details
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [x] All Paperclip CI gates are green
- [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups
- [x] I will address all Greptile and reviewer comments before
requesting merge

---------

Co-authored-by: Paperclip <noreply@paperclip.ing>
canary/v2026.716.0-canary.17
2026-07-16 14:02:14 -05:00
dependabot[bot] db61cc97d3 build(deps-dev): bump tsx from 4.22.4 to 4.23.1 (#9480)
Bumps [tsx](https://github.com/privatenumber/tsx) from 4.22.4 to 4.23.1.
<details>
<summary>Release notes</summary>
<p><em>Sourced from <a
href="https://github.com/privatenumber/tsx/releases">tsx's
releases</a>.</em></p>
<blockquote>
<h2>v4.23.1</h2>
<h2><a
href="https://github.com/privatenumber/tsx/compare/v4.23.0...v4.23.1">4.23.1</a>
(2026-07-13)</h2>
<h3>Bug Fixes</h3>
<ul>
<li>support tsImport after global preload (<a
href="https://github.com/privatenumber/tsx/commit/8d4ffc24f37b396ca2fe3f251aa92c4919f2c1a4">8d4ffc2</a>)</li>
<li><strong>watch:</strong> avoid clearing piped output (<a
href="https://github.com/privatenumber/tsx/commit/95d0672e0247a829ae4469daa493212967ea768e">95d0672</a>)</li>
<li><strong>watch:</strong> treat script and dependency paths literally
(<a
href="https://github.com/privatenumber/tsx/commit/79fddde523d3bb7d0af66682ce1265f95113a073">79fddde</a>)</li>
</ul>
<h3>Performance Improvements</h3>
<ul>
<li>index transform cache lazily (<a
href="https://github.com/privatenumber/tsx/commit/e818ad608159a6fb36fb8a0bd59327fec313323d">e818ad6</a>)</li>
<li>load esbuild lazily in CLI (<a
href="https://github.com/privatenumber/tsx/commit/d0679381b60a55a9b5863603a4022a81db5d13c8">d067938</a>)</li>
<li>map Node TypeScript formats directly (<a
href="https://github.com/privatenumber/tsx/commit/cdcc6232a3277fb3028b226958b66c49a6d86c17">cdcc623</a>)</li>
<li>use sync module hooks on Node v22.22.3+ (<a
href="https://github.com/privatenumber/tsx/commit/f8992f1a50213e11b7ef8ab5121c78e0d2f29384">f8992f1</a>)</li>
</ul>
<hr />
<p>This release is also available on:</p>
<ul>
<li><a href="https://www.npmjs.com/package/tsx/v/4.23.1"><code>npm
package (@​latest dist-tag)</code></a></li>
</ul>
<h2>v4.23.0</h2>
<h1><a
href="https://github.com/privatenumber/tsx/compare/v4.22.5...v4.23.0">4.23.0</a>
(2026-07-03)</h1>
<h3>Bug Fixes</h3>
<ul>
<li>avoid redundant filesystem probes during module resolution (<a
href="https://github.com/privatenumber/tsx/commit/257bbbb7eb2784cad6a3bb7a2d9c9747d28d96ec">257bbbb</a>),
closes <a
href="https://redirect.github.com/privatenumber/tsx/issues/809">privatenumber/tsx#809</a></li>
</ul>
<h3>Features</h3>
<ul>
<li>add multi-scenario startup benchmark suite (<a
href="https://github.com/privatenumber/tsx/commit/c178197b104d055fd3431f7448982f3156394d12">c178197</a>),
closes <a
href="https://redirect.github.com/privatenumber/tsx/issues/809">privatenumber/tsx#809</a>
<a
href="https://redirect.github.com/privatenumber/tsx/issues/809">#809</a>
<a href="https://github.com/hi/issues/signal">hi#signal</a> <a
href="https://redirect.github.com/privatenumber/tsx/issues/145">privatenumber/tsx#145</a>
<a
href="https://redirect.github.com/privatenumber/tsx/issues/809">#809</a></li>
</ul>
<hr />
<p>This release is also available on:</p>
<ul>
<li><a href="https://www.npmjs.com/package/tsx/v/4.23.0"><code>npm
package (@​latest dist-tag)</code></a></li>
</ul>
<h2>v4.22.5</h2>
<h2><a
href="https://github.com/privatenumber/tsx/compare/v4.22.4...v4.22.5">4.22.5</a>
(2026-07-02)</h2>
<h3>Bug Fixes</h3>
<ul>
<li>isolate hook state per async module.register() registration (<a
href="https://github.com/privatenumber/tsx/commit/a305f365f0cbcc31a44549dcbb0e63dc2883e96d">a305f36</a>)</li>
</ul>
<hr />
<p>This release is also available on:</p>
<ul>
<li><a href="https://www.npmjs.com/package/tsx/v/4.22.5"><code>npm
package (@​latest dist-tag)</code></a></li>
</ul>
</blockquote>
</details>
<details>
<summary>Commits</summary>
<ul>
<li><a
href="https://github.com/privatenumber/tsx/commit/79fddde523d3bb7d0af66682ce1265f95113a073"><code>79fddde</code></a>
fix(watch): treat script and dependency paths literally</li>
<li><a
href="https://github.com/privatenumber/tsx/commit/e818ad608159a6fb36fb8a0bd59327fec313323d"><code>e818ad6</code></a>
perf: index transform cache lazily</li>
<li><a
href="https://github.com/privatenumber/tsx/commit/cdcc6232a3277fb3028b226958b66c49a6d86c17"><code>cdcc623</code></a>
perf: map Node TypeScript formats directly</li>
<li><a
href="https://github.com/privatenumber/tsx/commit/d0679381b60a55a9b5863603a4022a81db5d13c8"><code>d067938</code></a>
perf: load esbuild lazily in CLI</li>
<li><a
href="https://github.com/privatenumber/tsx/commit/95d0672e0247a829ae4469daa493212967ea768e"><code>95d0672</code></a>
fix(watch): avoid clearing piped output</li>
<li><a
href="https://github.com/privatenumber/tsx/commit/6fd4607e8a99d1efe27f185f749c659138f00ece"><code>6fd4607</code></a>
docs: add per-page metadata</li>
<li><a
href="https://github.com/privatenumber/tsx/commit/f4176d8c6329a12205ed9b8c582e559cafc45018"><code>f4176d8</code></a>
docs: generate sitemap</li>
<li><a
href="https://github.com/privatenumber/tsx/commit/8d4ffc24f37b396ca2fe3f251aa92c4919f2c1a4"><code>8d4ffc2</code></a>
fix: support tsImport after global preload</li>
<li><a
href="https://github.com/privatenumber/tsx/commit/f0e89b244c98849dc5f9483fa33aaaf983ede18f"><code>f0e89b2</code></a>
docs: document Node's public type-stripping API vs internal loader
path</li>
<li><a
href="https://github.com/privatenumber/tsx/commit/f8992f1a50213e11b7ef8ab5121c78e0d2f29384"><code>f8992f1</code></a>
perf: use sync module hooks on Node v22.22.3+</li>
<li>Additional commits viewable in <a
href="https://github.com/privatenumber/tsx/compare/v4.22.4...v4.23.1">compare
view</a></li>
</ul>
</details>
<br />

Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
canary/v2026.716.0-canary.16
2026-07-16 13:59:26 -05:00
dependabot[bot] c4da1c925f build(deps): bump @agentclientprotocol/claude-agent-acp from 0.52.0 to 0.59.0 (#9484)
Bumps
[@agentclientprotocol/claude-agent-acp](https://github.com/agentclientprotocol/claude-agent-acp)
from 0.52.0 to 0.59.0.
<details>
<summary>Release notes</summary>
<p><em>Sourced from <a
href="https://github.com/agentclientprotocol/claude-agent-acp/releases">@​agentclientprotocol/claude-agent-acp's
releases</a>.</em></p>
<blockquote>
<h2>v0.59.0</h2>
<h2><a
href="https://github.com/agentclientprotocol/claude-agent-acp/compare/v0.58.1...v0.59.0">0.59.0</a>
(2026-07-13)</h2>
<h3>Features</h3>
<ul>
<li><strong>deps-dev:</strong> bump nanoid from 3.3.15 to 3.3.16 (<a
href="https://redirect.github.com/agentclientprotocol/claude-agent-acp/issues/875">#875</a>)
(<a
href="https://github.com/agentclientprotocol/claude-agent-acp/commit/e67dacdcac629b00e5bdcda94b3de57459696b1e">e67dacd</a>)</li>
<li><strong>deps:</strong> bump
<code>@​anthropic-ai/claude-agent-sdk</code> to 0.3.207 (<a
href="https://redirect.github.com/agentclientprotocol/claude-agent-acp/issues/874">#874</a>)
(<a
href="https://github.com/agentclientprotocol/claude-agent-acp/commit/c7f5b8fe768507afa28cdffe5cc3c054c56306ad">c7f5b8f</a>)</li>
</ul>
<h3>Bug Fixes</h3>
<ul>
<li>Add subagent parent tool use attribution (<a
href="https://redirect.github.com/agentclientprotocol/claude-agent-acp/issues/859">#859</a>)
(<a
href="https://github.com/agentclientprotocol/claude-agent-acp/commit/9cd48c597af68f630774ec00bc3adc85f6b0fd4b">9cd48c5</a>)</li>
<li>forward result text when the turn emitted no assistant message (<a
href="https://redirect.github.com/agentclientprotocol/claude-agent-acp/issues/858">#858</a>)
(<a
href="https://github.com/agentclientprotocol/claude-agent-acp/commit/61ae8609d4343da6758c2376c6cf684c7fb0956a">61ae860</a>)</li>
<li>hold a turn open while its background subagents are still live (<a
href="https://redirect.github.com/agentclientprotocol/claude-agent-acp/issues/870">#870</a>)
(<a
href="https://github.com/agentclientprotocol/claude-agent-acp/commit/7a70f82739e085014cad878f08513cdef7b7fe16">7a70f82</a>)</li>
<li>Refine tool calls from streamed input (<a
href="https://redirect.github.com/agentclientprotocol/claude-agent-acp/issues/867">#867</a>)
(<a
href="https://github.com/agentclientprotocol/claude-agent-acp/commit/2c19974d5b80d3178b35e80a4bb0a1050588aab9">2c19974</a>)</li>
<li>Seed context window from SDK usage report (<a
href="https://redirect.github.com/agentclientprotocol/claude-agent-acp/issues/868">#868</a>)
(<a
href="https://github.com/agentclientprotocol/claude-agent-acp/commit/3ba2d367a282fe3053a73804a416a435cb01ee08">3ba2d36</a>),
closes <a
href="https://redirect.github.com/agentclientprotocol/claude-agent-acp/issues/596">#596</a></li>
<li>Skip synthetic login messages on replay (<a
href="https://redirect.github.com/agentclientprotocol/claude-agent-acp/issues/869">#869</a>)
(<a
href="https://github.com/agentclientprotocol/claude-agent-acp/commit/c7dff3cf7eeb03cb993493efafa96344f18de81b">c7dff3c</a>),
closes <a
href="https://redirect.github.com/agentclientprotocol/claude-agent-acp/issues/863">#863</a></li>
</ul>
<h2>v0.58.1</h2>
<h2><a
href="https://github.com/agentclientprotocol/claude-agent-acp/compare/v0.58.0...v0.58.1">0.58.1</a>
(2026-07-09)</h2>
<h3>Bug Fixes</h3>
<ul>
<li>Use valid npm version for publish (<a
href="https://redirect.github.com/agentclientprotocol/claude-agent-acp/issues/855">#855</a>)
(<a
href="https://github.com/agentclientprotocol/claude-agent-acp/commit/8b366d8e9ad55e9237bf2d618cfc99b57fac570d">8b366d8</a>)</li>
</ul>
<h2>v0.58.0</h2>
<h2><a
href="https://github.com/agentclientprotocol/claude-agent-acp/compare/v0.57.0...v0.58.0">0.58.0</a>
(2026-07-09)</h2>
<h3>Features</h3>
<ul>
<li><strong>deps:</strong> update to
<code>@​anthropic-ai/claude-agent-sdk</code> 0.3.205 (<a
href="https://redirect.github.com/agentclientprotocol/claude-agent-acp/issues/854">#854</a>)
(<a
href="https://github.com/agentclientprotocol/claude-agent-acp/commit/f664ced76df00674d88aedd018a4261da3bc3f3a">f664ced</a>)</li>
</ul>
<h3>Bug Fixes</h3>
<ul>
<li>Preserve live model on resumed sessions (<a
href="https://redirect.github.com/agentclientprotocol/claude-agent-acp/issues/848">#848</a>)
(<a
href="https://github.com/agentclientprotocol/claude-agent-acp/commit/f3d8ae3eb389ee9367f48c8762562a55280ade0a">f3d8ae3</a>),
closes <a
href="https://redirect.github.com/agentclientprotocol/claude-agent-acp/issues/845">#845</a></li>
<li>Report usage for cancelled active turns (<a
href="https://redirect.github.com/agentclientprotocol/claude-agent-acp/issues/846">#846</a>)
(<a
href="https://github.com/agentclientprotocol/claude-agent-acp/commit/b03318f59c6165146c8d8e036227f35c3abd0ff4">b03318f</a>),
closes <a
href="https://redirect.github.com/agentclientprotocol/claude-agent-acp/issues/844">#844</a></li>
<li>tolerate missing text in streamed thinking chunks (<a
href="https://redirect.github.com/agentclientprotocol/claude-agent-acp/issues/852">#852</a>)
(<a
href="https://github.com/agentclientprotocol/claude-agent-acp/commit/e944ceddea79950d6bfb6339266862507c4b964f">e944ced</a>)</li>
<li>Use SDK guards for elicitation validation (<a
href="https://redirect.github.com/agentclientprotocol/claude-agent-acp/issues/850">#850</a>)
(<a
href="https://github.com/agentclientprotocol/claude-agent-acp/commit/32b93501d7a35a3b405b5022b4caaad492eed11c">32b9350</a>)</li>
</ul>
<h2>v0.57.0</h2>
<h2><a
href="https://github.com/agentclientprotocol/claude-agent-acp/compare/v0.56.0...v0.57.0">0.57.0</a>
(2026-07-07)</h2>
<h3>Features</h3>
<ul>
<li>Update <code>@​anthropic-ai/claude-agent-sdk</code> to 0.3.202 (<a
href="https://redirect.github.com/agentclientprotocol/claude-agent-acp/issues/843">#843</a>)
(<a
href="https://github.com/agentclientprotocol/claude-agent-acp/commit/1612c078953c134e12368a2d968a9bcf14d31b55">1612c07</a>)</li>
</ul>
<!-- raw HTML omitted -->
</blockquote>
<p>... (truncated)</p>
</details>
<details>
<summary>Changelog</summary>
<p><em>Sourced from <a
href="https://github.com/agentclientprotocol/claude-agent-acp/blob/main/CHANGELOG.md">@​agentclientprotocol/claude-agent-acp's
changelog</a>.</em></p>
<blockquote>
<h2><a
href="https://github.com/agentclientprotocol/claude-agent-acp/compare/v0.58.1...v0.59.0">0.59.0</a>
(2026-07-13)</h2>
<h3>Features</h3>
<ul>
<li><strong>deps-dev:</strong> bump nanoid from 3.3.15 to 3.3.16 (<a
href="https://redirect.github.com/agentclientprotocol/claude-agent-acp/issues/875">#875</a>)
(<a
href="https://github.com/agentclientprotocol/claude-agent-acp/commit/e67dacdcac629b00e5bdcda94b3de57459696b1e">e67dacd</a>)</li>
<li><strong>deps:</strong> bump
<code>@​anthropic-ai/claude-agent-sdk</code> to 0.3.207 (<a
href="https://redirect.github.com/agentclientprotocol/claude-agent-acp/issues/874">#874</a>)
(<a
href="https://github.com/agentclientprotocol/claude-agent-acp/commit/c7f5b8fe768507afa28cdffe5cc3c054c56306ad">c7f5b8f</a>)</li>
</ul>
<h3>Bug Fixes</h3>
<ul>
<li>Add subagent parent tool use attribution (<a
href="https://redirect.github.com/agentclientprotocol/claude-agent-acp/issues/859">#859</a>)
(<a
href="https://github.com/agentclientprotocol/claude-agent-acp/commit/9cd48c597af68f630774ec00bc3adc85f6b0fd4b">9cd48c5</a>)</li>
<li>forward result text when the turn emitted no assistant message (<a
href="https://redirect.github.com/agentclientprotocol/claude-agent-acp/issues/858">#858</a>)
(<a
href="https://github.com/agentclientprotocol/claude-agent-acp/commit/61ae8609d4343da6758c2376c6cf684c7fb0956a">61ae860</a>)</li>
<li>hold a turn open while its background subagents are still live (<a
href="https://redirect.github.com/agentclientprotocol/claude-agent-acp/issues/870">#870</a>)
(<a
href="https://github.com/agentclientprotocol/claude-agent-acp/commit/7a70f82739e085014cad878f08513cdef7b7fe16">7a70f82</a>)</li>
<li>Refine tool calls from streamed input (<a
href="https://redirect.github.com/agentclientprotocol/claude-agent-acp/issues/867">#867</a>)
(<a
href="https://github.com/agentclientprotocol/claude-agent-acp/commit/2c19974d5b80d3178b35e80a4bb0a1050588aab9">2c19974</a>)</li>
<li>Seed context window from SDK usage report (<a
href="https://redirect.github.com/agentclientprotocol/claude-agent-acp/issues/868">#868</a>)
(<a
href="https://github.com/agentclientprotocol/claude-agent-acp/commit/3ba2d367a282fe3053a73804a416a435cb01ee08">3ba2d36</a>),
closes <a
href="https://redirect.github.com/agentclientprotocol/claude-agent-acp/issues/596">#596</a></li>
<li>Skip synthetic login messages on replay (<a
href="https://redirect.github.com/agentclientprotocol/claude-agent-acp/issues/869">#869</a>)
(<a
href="https://github.com/agentclientprotocol/claude-agent-acp/commit/c7dff3cf7eeb03cb993493efafa96344f18de81b">c7dff3c</a>),
closes <a
href="https://redirect.github.com/agentclientprotocol/claude-agent-acp/issues/863">#863</a></li>
</ul>
<h2><a
href="https://github.com/agentclientprotocol/claude-agent-acp/compare/v0.58.0...v0.58.1">0.58.1</a>
(2026-07-09)</h2>
<h3>Bug Fixes</h3>
<ul>
<li>Use valid npm version for publish (<a
href="https://redirect.github.com/agentclientprotocol/claude-agent-acp/issues/855">#855</a>)
(<a
href="https://github.com/agentclientprotocol/claude-agent-acp/commit/8b366d8e9ad55e9237bf2d618cfc99b57fac570d">8b366d8</a>)</li>
</ul>
<h2><a
href="https://github.com/agentclientprotocol/claude-agent-acp/compare/v0.57.0...v0.58.0">0.58.0</a>
(2026-07-09)</h2>
<h3>Features</h3>
<ul>
<li><strong>deps:</strong> update to
<code>@​anthropic-ai/claude-agent-sdk</code> 0.3.205 (<a
href="https://redirect.github.com/agentclientprotocol/claude-agent-acp/issues/854">#854</a>)
(<a
href="https://github.com/agentclientprotocol/claude-agent-acp/commit/f664ced76df00674d88aedd018a4261da3bc3f3a">f664ced</a>)</li>
</ul>
<h3>Bug Fixes</h3>
<ul>
<li>Preserve live model on resumed sessions (<a
href="https://redirect.github.com/agentclientprotocol/claude-agent-acp/issues/848">#848</a>)
(<a
href="https://github.com/agentclientprotocol/claude-agent-acp/commit/f3d8ae3eb389ee9367f48c8762562a55280ade0a">f3d8ae3</a>),
closes <a
href="https://redirect.github.com/agentclientprotocol/claude-agent-acp/issues/845">#845</a></li>
<li>Report usage for cancelled active turns (<a
href="https://redirect.github.com/agentclientprotocol/claude-agent-acp/issues/846">#846</a>)
(<a
href="https://github.com/agentclientprotocol/claude-agent-acp/commit/b03318f59c6165146c8d8e036227f35c3abd0ff4">b03318f</a>),
closes <a
href="https://redirect.github.com/agentclientprotocol/claude-agent-acp/issues/844">#844</a></li>
<li>tolerate missing text in streamed thinking chunks (<a
href="https://redirect.github.com/agentclientprotocol/claude-agent-acp/issues/852">#852</a>)
(<a
href="https://github.com/agentclientprotocol/claude-agent-acp/commit/e944ceddea79950d6bfb6339266862507c4b964f">e944ced</a>)</li>
<li>Use SDK guards for elicitation validation (<a
href="https://redirect.github.com/agentclientprotocol/claude-agent-acp/issues/850">#850</a>)
(<a
href="https://github.com/agentclientprotocol/claude-agent-acp/commit/32b93501d7a35a3b405b5022b4caaad492eed11c">32b9350</a>)</li>
</ul>
<h2><a
href="https://github.com/agentclientprotocol/claude-agent-acp/compare/v0.56.0...v0.57.0">0.57.0</a>
(2026-07-07)</h2>
<h3>Features</h3>
<ul>
<li>Update <code>@​anthropic-ai/claude-agent-sdk</code> to 0.3.202 (<a
href="https://redirect.github.com/agentclientprotocol/claude-agent-acp/issues/843">#843</a>)
(<a
href="https://github.com/agentclientprotocol/claude-agent-acp/commit/1612c078953c134e12368a2d968a9bcf14d31b55">1612c07</a>)</li>
</ul>
<h3>Bug Fixes</h3>
<!-- raw HTML omitted -->
</blockquote>
<p>... (truncated)</p>
</details>
<details>
<summary>Commits</summary>
<ul>
<li><a
href="https://github.com/agentclientprotocol/claude-agent-acp/commit/30b7c06f7640fb6a0530ba18f85e26fe2bc08882"><code>30b7c06</code></a>
chore(main): release 0.59.0 (<a
href="https://redirect.github.com/agentclientprotocol/claude-agent-acp/issues/860">#860</a>)</li>
<li><a
href="https://github.com/agentclientprotocol/claude-agent-acp/commit/c7f5b8fe768507afa28cdffe5cc3c054c56306ad"><code>c7f5b8f</code></a>
feat(deps): bump <code>@​anthropic-ai/claude-agent-sdk</code> to 0.3.207
(<a
href="https://redirect.github.com/agentclientprotocol/claude-agent-acp/issues/874">#874</a>)</li>
<li><a
href="https://github.com/agentclientprotocol/claude-agent-acp/commit/7a70f82739e085014cad878f08513cdef7b7fe16"><code>7a70f82</code></a>
fix: hold a turn open while its background subagents are still live (<a
href="https://redirect.github.com/agentclientprotocol/claude-agent-acp/issues/870">#870</a>)</li>
<li><a
href="https://github.com/agentclientprotocol/claude-agent-acp/commit/e67dacdcac629b00e5bdcda94b3de57459696b1e"><code>e67dacd</code></a>
feat(deps-dev): bump nanoid from 3.3.15 to 3.3.16 (<a
href="https://redirect.github.com/agentclientprotocol/claude-agent-acp/issues/875">#875</a>)</li>
<li><a
href="https://github.com/agentclientprotocol/claude-agent-acp/commit/61ae8609d4343da6758c2376c6cf684c7fb0956a"><code>61ae860</code></a>
fix: forward result text when the turn emitted no assistant message (<a
href="https://redirect.github.com/agentclientprotocol/claude-agent-acp/issues/858">#858</a>)</li>
<li><a
href="https://github.com/agentclientprotocol/claude-agent-acp/commit/2c19974d5b80d3178b35e80a4bb0a1050588aab9"><code>2c19974</code></a>
fix: Refine tool calls from streamed input (<a
href="https://redirect.github.com/agentclientprotocol/claude-agent-acp/issues/867">#867</a>)</li>
<li><a
href="https://github.com/agentclientprotocol/claude-agent-acp/commit/c7dff3cf7eeb03cb993493efafa96344f18de81b"><code>c7dff3c</code></a>
fix: Skip synthetic login messages on replay (<a
href="https://redirect.github.com/agentclientprotocol/claude-agent-acp/issues/869">#869</a>)</li>
<li><a
href="https://github.com/agentclientprotocol/claude-agent-acp/commit/3ba2d367a282fe3053a73804a416a435cb01ee08"><code>3ba2d36</code></a>
fix: Seed context window from SDK usage report (<a
href="https://redirect.github.com/agentclientprotocol/claude-agent-acp/issues/868">#868</a>)</li>
<li><a
href="https://github.com/agentclientprotocol/claude-agent-acp/commit/f4e750decf6057cf984d15afe3a25a42f16f3911"><code>f4e750d</code></a>
feat(deps): bump the minor group with 11 updates (<a
href="https://redirect.github.com/agentclientprotocol/claude-agent-acp/issues/862">#862</a>)</li>
<li><a
href="https://github.com/agentclientprotocol/claude-agent-acp/commit/9cd48c597af68f630774ec00bc3adc85f6b0fd4b"><code>9cd48c5</code></a>
fix: Add subagent parent tool use attribution (<a
href="https://redirect.github.com/agentclientprotocol/claude-agent-acp/issues/859">#859</a>)</li>
<li>Additional commits viewable in <a
href="https://github.com/agentclientprotocol/claude-agent-acp/compare/v0.52.0...v0.59.0">compare
view</a></li>
</ul>
</details>
<br />

Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
2026-07-16 13:17:13 -05:00
LeonSGP d62c5adb7a fix(ui): stop recreating markdown mention observers (#3809)
Fixes #3759

## Thinking Path

> - Paperclip orchestrates AI agents and issue workflows, so the comment
composer has to stay stable under normal typing.
> - The affected subsystem is the shared markdown comment editor used
across issue and workflow surfaces.
> - That editor decorates mention links after Lexical updates the
editable DOM.
> - The current mention decoration effect recreates its
`MutationObserver` whenever `value` changes, which happens on every
keystroke.
> - That observer also reacts to the DOM mutations produced by mention
decoration itself, creating unnecessary observer churn in Chrome.
> - This pull request keeps one observer instance alive, batches
decoration work into `requestAnimationFrame`, and disconnects the
observer while decoration writes run.
> - The benefit is lower observer churn while preserving the existing
mention chip behavior.

## What Changed

- Removed `value` from the mention-decoration observer effect dependency
list so the observer is not recreated on every external value update.
- Batched mention decoration with `requestAnimationFrame` and
temporarily disconnected the observer while DOM decorations are applied
to avoid self-triggered feedback loops.
- Added a regression test that verifies external value changes do not
recreate the mention decoration observer.

## Verification

- `pnpm install --frozen-lockfile`
- `pnpm --filter @paperclipai/ui exec tsc --noEmit`
- `pnpm --filter @paperclipai/ui exec vitest run
src/components/MarkdownEditor.test.tsx` currently fails before test
collection on the existing repo baseline with `TypeError: undefined is
not an object (evaluating 'z.string')` from
`packages/shared/src/adapter-type.ts`

## Risks

- Low risk. The change is scoped to the mention decoration observer
lifecycle and keeps the existing decoration logic intact.
- The main behavior change is deferring decoration to the next animation
frame instead of running immediately on every observed mutation.

## Model Used

- OpenAI Codex, GPT-5-based coding agent with local tool use in the
Codex CLI environment.

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [ ] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [ ] If this change affects the UI, I have included before/after
screenshots
- [ ] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [x] I will address all Greptile and reviewer comments before
requesting merge
canary/v2026.716.0-canary.15
2026-07-16 10:44:17 -07:00
Dotta 8b04147ca4 perf(ui): stop polling the event-sourced company live-runs list (#9701)
## Thinking Path

> - Paperclip is the open source app people use to manage AI agents for
work
> - Its web UI keeps live views fresh with a live-events websocket plus
React Query, and #9627 began replacing polling with event-sourcing
(pushing data into the cache)
> - After the churn fixes (#9624) and #9627 shipped, a long-lived tab's
memory footprint was still climbing, so I re-profiled with the Chrome
DevTools MCP
> - The dominant remaining churn is React Query re-arming a polled
query's `refetchInterval` timer on **every** observer notification — and
our live-event handlers `setQueryData(liveRuns(companyId))` on nearly
every event, so each pushed update re-arms every `liveRuns` observer's
timer (the sidebar is always mounted)
> - #9627 event-sourced the live-runs data but left the now-redundant
`refetchInterval` in place, so we did half the fix — the poll is pure
waste and the thing re-arming timers
> - This pull request removes `refetchInterval` from the event-sourced
company live-runs queries so the frequent cache writes have no timer to
re-arm
> - The benefit is that the steady-state timer churn on the
most-observed resource collapses, so the off-heap footprint stops
climbing

## Linked Issues or Issue Description

No public GitHub issue exists; describing inline per CONTRIBUTING.md →
"Link Issues or Describe Them In-PR", following the bug report template.
Continues #9569 / #9624 / #9627.

**What happened?**

With the earlier fixes deployed, a browser tab left open on the app kept
growing its memory footprint. MCP profiling showed ~100+ `setInterval`
create/clear cycles per 5s on an aged tab (vs ~16 fresh), all from React
Query's refetch-interval timers being re-armed on every `setQueryData`
to the frequently-written `liveRuns(companyId)` query.

**Expected behavior**

A resource whose data is pushed (event-sourced) should not also poll;
cache writes should not repeatedly re-arm interval timers. Idle tabs
should hold a bounded footprint.

**Steps to reproduce**

Open a tab with agents streaming, leave it open, and instrument
`setInterval`/`clearInterval`: the churn rate climbs and traces to
`QueryObserver.updateTimers` (`refetchInterval`) for `liveRuns`,
re-armed by every live-event cache write.

**Paperclip version or commit**

Branch `perf/drop-live-runs-refetch-interval`, off `master` (after
#9627).

**Deployment mode**

Local dev (`pnpm dev`), web UI. Core UI live-updates plumbing; not
adapter-specific.

## What Changed

- Set `refetchInterval: false` on every site that polls the **plain**
`queryKeys.liveRuns(companyId)` query (event-sourced by #9627):
`Sidebar`, `SidebarAgents`, `Issues`, `Inbox`, `IssueDetail`
(companyLiveRuns), `ProjectDetail` (×2), `Routines`,
`ExecutionWorkspaceDetail`, `bridge-init`.
- Removed the now-unused `useVisibilityRefetchInterval` interval
vars/imports in `Issues`, `Inbox`, `IssueDetail`.
- **Left variant-key sites polling on purpose** — `Agents` page
(`[...liveRuns, "agents-page"]`) and `ActiveAgentsPanel` (`[...liveRuns,
scope, …]`) are NOT event-sourced by #9627 (different exact cache key),
so dropping their poll would make them stale. Those are a later phase.
- Freshness for the converted queries now comes from event-sourcing
(#9627) + its reconnect reconcile; the initial mount fetch and cross-tab
publish (`usePublishSharedQueryData`) still happen.

## Verification

- MCP profiling identified the churn: the single churning callback is
React Query's `refetchInterval` timer, re-armed by
`setQueryData(liveRuns)` on live events.
- `vitest`: all affected suites pass (`Sidebar`, `SidebarAgents`,
`Issues`, `Inbox`, `IssueDetail`, `ProjectDetail`, `Routines`,
`ExecutionWorkspaceDetail`, `LiveUpdatesProvider`) — 153 tests.
- Updated two `SidebarAgents` linger-window tests: they advanced fake
timers to the *exact* linger-expiry boundary and had relied on
poll-induced re-renders to flush. The linger self-schedules its own
`setTimeout`, so the tests now cross the boundary with a small margin +
an explicit flush (no product change).
- `tsc -b` clean.
- End-to-end footprint reduction should be re-measured against a rebuilt
bundle with the same instrumentation.

## Risks

Low, client-only.
- `liveRuns(companyId)` freshness now depends entirely on event-sourcing
+ reconnect reconcile (both from #9627). If an event path is missed, the
reconnect handler refetches once; durable replay is a planned later
phase.
- Variant-key run lists (Agents page, ActiveAgentsPanel) are unchanged
and still poll, so they don't regress.
- Issue-scoped run queries (`issues.liveRuns/activeRun/runs`) are
**not** touched here — they aren't event-sourced yet and are a separate
phase.

## Model Used

- **Provider:** Anthropic, via the Claude Code CLI.
- **Model:** Claude Opus 4.8 (`claude-opus-4-8`).
- **Reasoning mode:** Extended thinking enabled.
- **Capabilities used:** tool use (shell, file editing), and the Chrome
DevTools MCP to re-profile the live instance and pinpoint the
`refetchInterval` timer churn.

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work (a perf/plumbing change)
- [x] I have searched GitHub for duplicate or related PRs and linked
them above (continues #9627; no duplicates)
- [x] I have either (a) linked existing issues with `Fixes: #` / `Closes
#` / `Refs #` OR (b) described the issue in-PR following the relevant
issue template
- [x] I have not referenced internal/instance-local Paperclip issues or
links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip`
URLs)
- [x] My branch name describes the change (e.g. `docs/...`, `fix/...`)
and contains no internal Paperclip ticket id or instance-derived details
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [x] I have considered and documented any risks above
- [ ] I have updated relevant documentation to reflect my changes (N/A —
no user-facing docs; rationale documented inline)
- [x] All Paperclip CI gates are green
- [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups
- [x] I will address all Greptile and reviewer comments before
requesting merge

🤖 Generated with [Claude Code](https://claude.com/claude-code)
canary/v2026.716.0-canary.14
2026-07-16 11:42:04 -05:00
DottaandPaperclip 5a5c918705 fix(acpx): configure Codex models at startup (#9700)
Move Codex ACPX model, reasoning effort, and fast-mode settings into CODEX_CONFIG startup config so arbitrary model IDs avoid ACP session picker validation.

Co-Authored-By: Paperclip <noreply@paperclip.ing>
2026-07-16 11:41:48 -05:00
DottaandPaperclip 9a92124c63 fix(codex-local): raise default output-inactivity timeout to 30m (#9699)
## Thinking Path

> - Paperclip is the open source control plane for managing AI-agent
companies.
> - Agent adapters are responsible for launching, observing, and
terminating provider processes safely.
> - The local Codex adapter uses an output-inactivity monitor to stop
genuinely hung child processes.
> - The existing seven-minute default also stopped legitimate
long-running tasks that emitted no output while tests or remote checks
were still running.
> - Explicit per-agent timeout overrides already provide configuration
flexibility, so the smallest safe correction is to increase only the
default window.
> - This pull request raises the default to 30 minutes, retains the
existing termination behavior, and adds a regression assertion for the
new value.
> - The benefit is fewer unnecessary Codex restarts while still bounding
genuinely silent processes well below the platform safety limit.

## Linked Issues or Issue Description

**Pre-submission checklist**
- Searched open and closed GitHub issues and pull requests; no duplicate
fix exists. The original inactivity monitor was introduced in #5017.
- Reproduces on the current `master` implementation.
- The termination originates in Paperclip's Codex adapter inactivity
monitor rather than the model provider or local configuration.

**What happened?**
Long-running `codex_local` tasks were terminated after seven minutes
without stdout or stderr, even when the child process was still
performing legitimate work such as a quiet test suite or waiting for
remote checks.

**Expected behavior**
The default inactivity window should tolerate common long-running quiet
tasks while continuing to terminate processes that remain silent for an
extended period.

**Steps to reproduce**
1. Start a `codex_local` run with the default
`outputInactivityTimeoutMs` configuration.
2. Have the child process perform legitimate work without emitting
stdout or stderr for more than seven minutes.
3. Observe the adapter terminate the process at the old default
threshold.

**Version / deployment**
Current `master`, built from source in local/self-hosted deployments,
using the Codex adapter. This behavior is not database- or
access-context-specific.

## What Changed

- Raise `DEFAULT_CODEX_OUTPUT_INACTIVITY_TIMEOUT_MS` from seven minutes
to 30 minutes.
- Update the adapter configuration documentation to state the new
default.
- Add a focused regression assertion that pins the default to 30
minutes.

## Verification

- `pnpm vitest run
packages/adapters/codex-local/src/server/output-inactivity-monitor.test.ts`
— 15 tests passed.
- `pnpm --filter @paperclipai/adapter-codex-local typecheck` — passed.

## Risks

- Low risk: only the fallback default changes; explicit positive timeout
values and `null` disablement retain their existing behavior.
- A genuinely silent Codex process now remains alive up to 23 minutes
longer before the same SIGTERM/SIGKILL cleanup path runs.
- No schema, API, migration, UI, or workflow changes are included.

> This is a focused bug fix and does not overlap with planned core
feature work in `ROADMAP.md`.

## Model Used

- Anthropic Claude Fable 5 via the `claude_local` adapter produced the
initial investigation and implementation with repository/tool access.
- OpenAI Codex via the Codex CLI prepared the PR, added the focused
regression assertion, and ran verification; the runtime did not expose a
more specific model ID or context-window value.

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have searched GitHub for duplicate or related PRs and linked
them above
- [x] I have either (a) linked existing issues with `Fixes: #` / `Closes
#` / `Refs #` OR (b) described the issue in-PR following the relevant
issue template
- [x] I have not referenced internal/instance-local Paperclip issues or
links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip`
URLs)
- [ ] I have used a public-friendly branch name without internal tracker
identifiers (execution-workspace exception: this branch is
runtime-managed and cannot be renamed)
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [x] All Paperclip CI gates are green
- [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups
- [x] I will address all Greptile and reviewer comments before
requesting merge

The source branch is execution-workspace managed and cannot be renamed
during this run; the PR title and body intentionally contain no internal
tracker references.

Co-authored-by: Paperclip <noreply@paperclip.ing>
canary/v2026.716.0-canary.13
2026-07-16 11:41:29 -05:00
DottaandPaperclip 6ec059ab4e fix(server): suppress stale handoff alarms during live continuation (#9695)
## Thinking Path

> - Paperclip is the open source app people use to manage AI agents for
work
> - The control plane records a successful-run handoff when productive
work ends without a durable next-step disposition
> - That handoff state was derived only from the latest activity event,
without checking whether a corrective run or wake was currently alive
> - As a result, actively progressing issues could still show a
high-severity missing-disposition alarm and blocked-inbox row
> - The same stale required event could also remain indefinitely when a
later successful run correctly skipped recovery because another valid
continuation path already existed
> - This pull request makes the derived state liveness-aware, suppresses
attention only while the live path exists, and resolves stale required
events on valid-path skips
> - The benefit is that productive work stays calm while genuine stalls
still resurface automatically when liveness disappears

## Linked Issues or Issue Description

- **Bug:** An issue whose latest successful-run handoff event is
`required` continues to report a missing disposition even while a
heartbeat run, scheduled retry, or queued/deferred/claimed wake is
actively targeting that issue.
- **Expected behavior:** The API should expose current continuation
liveness, the blocked inbox should suppress the alarm only while that
path remains live, and a later successful run that skips recovery
because a valid path exists should durably resolve the stale event.
- **Related but distinct:** #9370 changes disposition freshness at
detection time; #8748 adds an explicit policy opt-out. This PR preserves
detection/escalation policy and fixes read-time/current-liveness state.

## What Changed

- Extended `SuccessfulRunHandoffState` with `hasLiveContinuation` and
optional `liveRunId` evidence.
- Added bounded liveness hydration for required handoff states using
active heartbeat-run and wake-request signals.
- Suppressed `missing_disposition` blocked-inbox rows only while a run,
scheduled retry, or live wake targets the issue.
- Added durable `issue.successful_run_handoff_resolved` logging when
handoff detection skips because another valid continuation path owns the
next action.
- Added focused regressions for live/absent derived state, self-healing
attention suppression, valid-path skip classification, and
resolved-event logging.
- Updated UI normalization and fixtures for the shared contract without
changing rendering behavior.

## Verification

- `pnpm --filter @paperclipai/shared typecheck`
- `pnpm --filter @paperclipai/server typecheck`
- `pnpm --filter @paperclipai/ui typecheck`
- `pnpm vitest run
server/src/services/recovery/successful-run-handoff.test.ts
server/src/__tests__/issue-list-assignee-filter-routes.test.ts
server/src/__tests__/issue-blocker-attention.test.ts` — 56 passed
- `pnpm vitest run
server/src/__tests__/heartbeat-process-recovery.test.ts -t "queues one
finish-handoff wake when a successful run leaves in-progress work
without a next action"` — 1 passed
- `git diff --check`

## Risks

- Low risk: no schema or migration changes, and detection, bounded
correction attempts, and escalation behavior are unchanged.
- Liveness lookups are limited to issues whose latest handoff state is
`required`; blocked-inbox suppression reuses rows already loaded by that
query path.
- Suppression is read-time and self-healing: when the run or wake stops,
the alarm returns on the next fetch.

> For core feature work, check [`ROADMAP.md`](ROADMAP.md) first and
discuss it in `#dev` before opening the PR. Feature PRs that overlap
with planned core work may need to be redirected — check the roadmap
first. See `CONTRIBUTING.md`.

## Model Used

- OpenAI Codex using `gpt-5.4`, tool-enabled software-engineering
workflow with repository, shell, test, Git, GitHub, and Paperclip
control-plane access. Context-window size is not exposed by this
runtime.

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have searched GitHub for duplicate or related PRs and linked
them above
- [x] I have either (a) linked existing issues with `Fixes: #` / `Closes
#` / `Refs #` OR (b) described the issue in-PR following the relevant
issue template
- [x] I have not referenced internal/instance-local Paperclip issues or
links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip`
URLs)
- [x] My branch name describes the change (e.g. `docs/...`, `fix/...`)
and contains no internal Paperclip ticket id or instance-derived details
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [x] All Paperclip CI gates are green
- [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups
- [x] I will address all Greptile and reviewer comments before
requesting merge

---------

Co-authored-by: Paperclip <noreply@paperclip.ing>
canary/v2026.716.0-canary.12
2026-07-16 10:49:47 -05:00
DottaandPaperclip a04a77c9d3 feat(authz): govern agent inbox archive access (#9658)
## Thinking Path

> - Paperclip is the open source control plane people use to manage
AI-agent companies and their work
> - The inbox subsystem must let agents act for a responsible user
without silently granting access to every company user's tasks
> - Existing authorization had no inbox-specific action, target-user
scope, or per-user agent policy
> - Inbox archive data also needs company-safe ownership and replay-safe
schema changes before API mutations can rely on it
> - This pull request adds the database policy foundation and a
fail-closed `inbox:manage` authorization decision
> - The benefit is a least-privilege core for later inbox archive
endpoints, including explicit cross-user grants and low-trust denial

## Linked Issues or Issue Description

### Subsystem affected

Cross-cutting (`packages/db`, `packages/shared`, and `server`).

### Problem or motivation

Agents need to manage inbox state for the user responsible for their
run, but the control plane lacks an inbox-specific permission model and
user-targeted grant scope. A generic mutation path would risk cross-user
access or inconsistent policy enforcement.

### Proposed solution

Add inbox archive ownership and per-user agent policies, introduce
`inbox:manage`, and evaluate responsible-user defaults,
disabled/allowlist policies, active membership, low-trust presets, and
scoped cross-user grants in one authorization decision.

### Alternatives considered

Reusing generic issue mutation permissions was rejected because it
cannot express user-targeted inbox scope. Requiring grants for all
self-user access was rejected because it would make the responsible-user
path closed by default instead of using the requested per-user policy
model.

### Roadmap alignment

`ROADMAP.md` contains no overlapping inbox archive or inbox
authorization item; this is incremental control-plane authorization
work.

### Additional context

This PR provides the authorization and schema foundation. Route and UI
behavior can build on this decision without duplicating access-control
rules.

## What Changed

- Builds on the merged migration `0172_inbox_archive_agent_policies`
(#9654) for company/user-scoped inbox archives and per-user agent policy
rows.
- Added replay-safe migration `0173_inbox_policy_agent_cleanup` with a
GIN allowlist index and GIN-backed database cleanup that removes deleted
agent IDs from policy allowlists.
- Added Drizzle schema exports for inbox agent policies and
responsible-user ownership on inbox archives.
- Added the shared `inbox:manage` permission key and `scope.userIds`
evaluation for user-targeted grants.
- Added fail-closed inbox authorization for unresolved targets, inactive
memberships, low-trust agents, disabled policies, allowlist misses, and
ungranted cross-user access.
- Added migration replay coverage and the full inbox authorization
decision matrix.

## Verification

- `pnpm exec vitest run
packages/db/src/inbox-archive-agent-policies-migration.test.ts
server/src/__tests__/authorization-service.test.ts` — 50 tests passed.
- `pnpm --filter @paperclipai/db typecheck`
- `pnpm --filter @paperclipai/shared typecheck`
- `pnpm --filter @paperclipai/server typecheck`
- `git diff --check origin/master...HEAD`

## Risks

- The merged `0172` migration changed inbox archive uniqueness from
agent-owned to responsible-user-owned rows; `0173` is additive (index +
cleanup trigger) and idempotent, and replay coverage verifies both
remain safe for databases that already applied an earlier form.
- `scope.userIds` uses the existing JSON grant-scope parser, so
malformed privileged grant payloads continue to fail through the shared
parsing behavior rather than a dedicated schema.
- Cross-user grants intentionally act as board-admin overrides;
responsible-user default access remains bounded by disabled and
allowlist policies.
- The authorization action is not yet wired to public mutation routes,
limiting immediate behavioral impact while establishing the contract
those routes must use.

> For core feature work, check [`ROADMAP.md`](ROADMAP.md) first and
discuss it in `#dev` before opening the PR. Feature PRs that overlap
with planned core work may need to be redirected — check the roadmap
first. See `CONTRIBUTING.md`.

## Model Used

- OpenAI Codex with `gpt-5.6-sol`, high reasoning effort, CLI tool use,
code execution, GitHub CLI, and Paperclip control-plane integration.
Context window size is not exposed by the configured adapter.

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have searched GitHub for duplicate or related PRs and linked
them above
- [x] I have either (a) linked existing issues with `Fixes: #` / `Closes
#` / `Refs #` OR (b) described the issue in-PR following the relevant
issue template
- [x] I have not referenced internal/instance-local Paperclip issues or
links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip`
URLs)
- [x] My branch name describes the change (e.g. `docs/...`, `fix/...`)
and contains no internal Paperclip ticket id or instance-derived details
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [x] All Paperclip CI gates are green
- [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups
- [x] I will address all Greptile and reviewer comments before
requesting merge

---------

Co-authored-by: Paperclip <noreply@paperclip.ing>
2026-07-16 09:51:48 -05:00
DottaandPaperclip c65ab09d9f fix(recovery): wait for provider quota resets (#9635)
## Thinking Path

> - Paperclip is the open source control plane people use to manage
AI-agent companies and keep assigned work moving safely.
> - The recovery subsystem decides whether a failed agent run should
retry, wait, block for configuration, or escalate to another owner.
> - Provider usage-limit failures currently arrive as generic
`adapter_failed` results, so stranded-work reconciliation can create
takeover recovery even when the provider states that capacity will reset
later.
> - Credential and model lookup failures are also configuration
problems, not evidence that another agent should take over the task.
> - This pull request classifies those failure families at recovery time
and persists the classification on the run.
> - Quota failures now schedule a monitor for the original assignee at
the parsed reset time, or after a bounded default backoff when no reset
time is available.
> - The benefit is that transient provider capacity waits no longer wake
recovery owners, while configuration failures stop with an actionable
classification.

## Linked Issues or Issue Description

No public GitHub issue exists for this exact change.

**What happened?** When an assigned issue's latest run failed with a
provider usage-limit message such as "try again at 12:00 AM (UTC),"
recovery treated the run as generic `adapter_failed` work and could
create a takeover action. Missing credentials and `model_not_found`
failures followed the same generic path.

**Expected behavior:** Provider quota failures should keep the original
assignee and schedule a monitor for the reset time, without creating
recovery work or immediately waking another owner. Missing credentials
and model lookup failures should be classified as
`configuration_incomplete` and blocked with the configuration fix
recorded.

**Steps to reproduce:**
1. Assign and start an issue for an agent.
2. Record a failed heartbeat run with `errorCode: adapter_failed` and a
provider quota/reset message.
3. Run stranded assigned-issue reconciliation.
4. Observe that the old behavior routes the issue through generic
recovery instead of waiting for provider capacity.

Reproduced on `master` at `9af96461d`. This is a core recovery bug, not
adapter-specific, and applies to built-from-source deployments with
either embedded PGlite or Postgres.

Related work checked: #9288 adds adapter-side Claude provider-limit
classification; #5392 suppresses some recovery creation for quota-class
errors; #9634 is a broader recovery-routing change with overlapping
provider-quota behavior. This PR is the narrow recovery-service fix with
focused parsed-reset, fallback-backoff, zero-takeover, and
configuration-failure coverage.

## What Changed

- Added conservative recovery-time classification for provider quota,
missing-credential, and model-not-found adapter failures.
- Parsed provider reset timestamps with a default one-hour backoff when
no usable reset time is present.
- Persisted `provider_quota` or `configuration_incomplete` metadata on
the failed heartbeat run.
- Scheduled quota monitors for the active issue owner, including the
current review participant, without creating recovery actions or
enqueueing takeover wakes.
- Routed configuration failures to blocked recovery with actionable
evidence instead of a takeover.
- Added unit and embedded-database regression coverage for
parsed/fallback quota timing, zero CTO/recovery wake behavior, and
configuration classification.

## Verification

- `pnpm exec vitest run
server/src/services/recovery/provider-failure-classification.test.ts
server/src/__tests__/issue-recovery-actions.test.ts
server/src/__tests__/issue-monitor-scheduler.test.ts
server/src/__tests__/heartbeat-stale-queue-invalidation.test.ts` — 4
files passed, 66 tests passed.
- `pnpm --filter @paperclipai/shared typecheck` — passed.
- `pnpm --filter @paperclipai/server typecheck` — passed.

## Risks

- Recovery behavior changes for text-matched adapter failures; matching
is intentionally conservative, and unmatched failures retain the
existing generic recovery path.
- Provider reset strings do not always include a date or timezone;
parsing chooses the next future matching time and falls back to a
one-hour wait when the timestamp is unusable.
- This overlaps the provider-quota portion of broader recovery-routing
PR #9634, so only one implementation should land if both remain open.
- No schema, migration, API contract, or UI changes are included. No
documentation update is needed because this corrects internal recovery
behavior without changing operator commands or configuration.

> For core feature work, check [`ROADMAP.md`](ROADMAP.md) first and
discuss it in `#dev` before opening the PR. Feature PRs that overlap
with planned core work may need to be redirected — check the roadmap
first. See `CONTRIBUTING.md`.

## Model Used

- OpenAI Codex with model `gpt-5.4`, medium reasoning, tool use, and
code execution. The runtime does not expose its configured
context-window size.

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have searched GitHub for duplicate or related PRs and linked
them above
- [x] I have either (a) linked existing issues with `Fixes: #` / `Closes
#` / `Refs #` OR (b) described the issue in-PR following the relevant
issue template
- [x] I have not referenced internal/instance-local Paperclip issues or
links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip`
URLs)
- [x] My branch name describes the change (e.g. `docs/...`, `fix/...`)
and contains no internal Paperclip ticket id or instance-derived details
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [ ] All Paperclip CI gates are green
- [ ] Greptile is 5/5 with no open P2s, recommendations, or follow-ups
- [x] I will address all Greptile and reviewer comments before
requesting merge

---------

Co-authored-by: Paperclip <noreply@paperclip.ing>
2026-07-16 09:24:38 -05:00
DottaandPaperclip 85404b46c5 fix(server): throttle serial recovery repeats (#9651)
## Thinking Path

> - Paperclip is the open source control plane people use to coordinate
AI-agent companies.
> - Its recovery services create productivity reviews and liveness
escalations when work stops making progress.
> - Existing uniqueness guards prevent concurrent duplicates, but
terminal recovery tasks can still be recreated serially without enough
time for conditions to change.
> - That creates noisy review churn for persistently stalled issues and
immediate liveness re-escalation after a recovery task closes.
> - This pull request adds bounded, configurable cooldown and no-action
suppression behavior to those two recovery paths.
> - The benefit is quieter recovery automation that still resumes
automatically after source activity or cooldown expiry.

## Linked Issues or Issue Description

### Pre-submission checklist

- [x] I have searched existing open and closed issues and this is not a
duplicate.
- [x] I can reproduce this behavior on `master`.
- [x] I have confirmed the behavior originates in Paperclip core
recovery orchestration, not an adapter, provider, or local
configuration.

### What happened?

Recovery reconciliation can serially recreate equivalent system-origin
tasks after previous tasks become terminal. Productivity reviews allowed
multiple creations for the same source issue within a rolling day, and a
closed liveness escalation could be recreated immediately for the same
incident or recovery leaf.

### Expected behavior

Productivity review creation should be limited to once per rolling 24
hours, repeated completed reviews that produced no source action should
eventually suppress further creation until activity resumes, and
recently terminal liveness escalations should receive a short cooldown
before recreation.

### Steps to reproduce

1. Create a stalled assigned issue that meets productivity-review
eligibility.
2. Complete repeated productivity-review tasks without adding
source-issue activity, then reconcile again within 24 hours.
3. Create and close a liveness escalation for a blocked issue graph,
then immediately reconcile the same graph.
4. Observe that equivalent system tasks can be recreated serially
without a meaningful state change.

### Paperclip version or commit

`5588ddf68175eea448f9d19677b97d7393c38c3d` (`master` when reproduced)

### Deployment mode

Local dev (`pnpm dev`)

### Installation method

Built from source (`pnpm dev` / `pnpm build`)

### Agent adapter(s) involved

- [x] Not adapter-specific (core bug)

### Database mode

Embedded PGlite (default — `DATABASE_URL` unset)

### Access context

Unclear / not applicable

### Node.js version

Current repository-supported Node.js runtime.

### Operating system

Linux development environment.

### Relevant logs or output

No error is emitted; the bug is repeated task creation visible in
persisted issue history.

### Relevant config (if applicable)

No special configuration is required.

### Additional context

The concurrent/open-task uniqueness guards work as designed; this change
targets serial repeats after matching tasks become terminal.

### Privacy checklist

- [x] I have reviewed all pasted output for PII and redacted where
necessary.

## What Changed

- Tightened the productivity-review creation cap to one review per
source issue in a rolling 24-hour window.
- Added configurable suppression after three consecutive completed
reviews with no source-issue activity, with automatic reset when source
activity occurs.
- Added a configurable one-hour default cooldown for matching terminal
liveness escalations.
- Exposed the liveness reconciliation clock/cooldown inputs for
deterministic orchestration tests.
- Added focused tests for daily enforcement, no-action suppression and
reset, and cooldown expiry.

## Verification

- `pnpm exec vitest run
server/src/__tests__/productivity-review-service.test.ts
server/src/__tests__/heartbeat-issue-liveness-escalation.test.ts` — 36
tests passed.
- `pnpm --filter @paperclipai/server typecheck` — passed.
- Confirm the focused tests demonstrate creation after source activity
and after the liveness cooldown expires.

## Risks

- Low-to-moderate behavioral risk: recovery tasks intentionally appear
less often, so overly aggressive thresholds could delay intervention for
a persistently stalled issue.
- Thresholds are configurable through reconciliation inputs, and source
activity resets productivity-review suppression.
- No database migration, public API change, telemetry contract change,
or UI behavior change.

> For core feature work, check [`ROADMAP.md`](ROADMAP.md) first and
discuss it in `#dev` before opening the PR. Feature PRs that overlap
with planned core work may need to be redirected — check the roadmap
first. See `CONTRIBUTING.md`.

## Model Used

- OpenAI Codex using GPT-5.3-Codex, with reasoning, repository/terminal
tool use, code execution, and test execution. The runtime did not expose
a reliable context-window size.

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have searched GitHub for duplicate or related PRs and linked
them above
- [x] I have either (a) linked existing issues with `Fixes: #` / `Closes
#` / `Refs #` OR (b) described the issue in-PR following the relevant
issue template
- [x] I have not referenced internal/instance-local Paperclip issues or
links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip`
URLs)
- [x] My branch name describes the change (e.g. `docs/...`, `fix/...`)
and contains no internal Paperclip ticket id or instance-derived details
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [x] All Paperclip CI gates are green
- [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups
- [x] I will address all Greptile and reviewer comments before
requesting merge

---------

Co-authored-by: Paperclip <noreply@paperclip.ing>
canary/v2026.716.0-canary.11
2026-07-16 09:22:50 -05:00
DottaandPaperclip da549123cc feat(db): add inbox archive agent policies (#9654)
## Thinking Path

> - Paperclip is the open source app people use to manage AI agents for
work
> - The inbox tracks issue visibility separately for each responsible
user
> - Existing inbox archive records only identify the user whose inbox
changed, not the actor that made the change
> - Agent-managed inbox cleanup needs durable agent and heartbeat-run
attribution for auditability
> - Users also need a minimal core policy that can remain open, restrict
access to an allowlist, or disable agent inbox management
> - This pull request adds those database contracts without changing
routes or services
> - The benefit is a company-scoped, auditable foundation for later
agent inbox-management APIs

## Linked Issues or Issue Description

### Subsystem affected

`packages/db` — Drizzle schema and migrations.

### Problem or motivation

Agent workflows such as PR gardening can reduce inbox noise after work
is complete, but existing inbox archive records only identify the user
whose inbox changed. They cannot retain which agent acted or which
heartbeat run performed the action, and there is no user-specific policy
controlling whether agents may manage that inbox.

### Proposed solution

Add database-only contracts for agent-managed inbox archiving: actor
type, agent ID, and heartbeat-run attribution on archive rows, plus one
company-scoped policy per user with `open`, `allowlist`, or `disabled`
mode. Existing archive rows retain `user` attribution by default. Route,
service, and UI behavior are intentionally deferred.

### Alternatives considered

- Store attribution only in activity logs: rejected because archive
state needs durable, directly queryable attribution.
- Add richer per-agent rules immediately: rejected because advanced
policy rules belong in a later or enterprise layer; the core table stays
deliberately minimal.
- Implement APIs in the same change: rejected to keep this
migration-focused PR independently reviewable and safe to deploy.

### Roadmap alignment

`ROADMAP.md` does not currently list this capability. This PR
establishes only the database foundation and does not overlap a listed
roadmap item.

### Additional context

Expected behavior is that legacy archive rows upgrade without backfill,
new archive rows can reference an agent and heartbeat run, and each
company/user pair has at most one agent policy.

## What Changed

- Added actor type, agent ID, and heartbeat run ID attribution columns
to `issue_inbox_archives` with enum checks and `SET NULL` foreign keys.
- Added the company-scoped `user_inbox_agent_policies` table with mode
validation, JSONB agent allowlists, timestamps, and unique company/user
ownership.
- Added migration `0172_inbox_archive_agent_policies.sql` using
idempotent DDL for existing installations.
- Added an embedded PostgreSQL migration test covering legacy rows,
attribution round-trips, policy JSON, and policy uniqueness.

## Verification

- `pnpm --filter @paperclipai/db exec vitest run
src/inbox-archive-agent-policies-migration.test.ts`
- `pnpm --filter @paperclipai/db typecheck`

## Risks

- Low migration risk: adding the non-null actor type uses a constant
`user` default so legacy rows upgrade without a data backfill.
- Agent and run deletions clear attribution foreign keys by design; the
actor type remains available for audit interpretation.
- No API behavior changes are included, so the new contracts remain
unused until follow-up service work lands.

> For core feature work, check [`ROADMAP.md`](ROADMAP.md) first and
discuss it in `#dev` before opening the PR. Feature PRs that overlap
with planned core work may need to be redirected — check the roadmap
first. See `CONTRIBUTING.md`.

## Model Used

- OpenAI Codex using GPT-5.4 with reasoning, repository tools, shell
execution, and test execution. The runtime did not expose a
context-window size.

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have searched GitHub for duplicate or related PRs and linked
them above
- [x] I have either (a) linked existing issues with `Fixes: #` / `Closes
#` / `Refs #` OR (b) described the issue in-PR following the relevant
issue template
- [x] I have not referenced internal/instance-local Paperclip issues or
links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip`
URLs)
- [x] My branch name describes the change (e.g. `docs/...`, `fix/...`)
and contains no internal Paperclip ticket id or instance-derived details
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [x] All Paperclip CI gates are green
- [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups
- [x] I will address all Greptile and reviewer comments before
requesting merge

---------

Co-authored-by: Paperclip <noreply@paperclip.ing>
2026-07-16 08:48:39 -05:00
DottaandClaude Opus 4.8 054b076b58 fix(ui): keep inbox hover and j/k keyboard selection in sync across list reshapes (#9680)
## Thinking Path

> - Paperclip is the open source app people use to manage AI agents for
work
> - The Inbox is the primary triage surface; it supports both mouse
hover and `j`/`k` keyboard navigation over a flat, expandable list of
rows
> - Hover and keyboard selection are meant to be a single shared
"cursor": hovering a row and then pressing `j`/`k` should continue from
the hovered row, not jump elsewhere
> - A prior hover-perf rewrite moved the hovered row into a numeric
`hoveredIndexRef` and nulled it whenever the list reshaped; because the
inbox polls constantly, any refresh between hovering and pressing a key
dropped the hovered index
> - With the hovered index dropped, the next keypress fell back to
selection index `0`, stranding the cursor at the top of the list instead
of continuing from the hovered row
> - This pull request tracks the hovered row's stable identity (a nav
key) alongside the numeric index and re-anchors it by key across
reshapes, mirroring the existing keyboard-selection reconciliation
> - The benefit is that mouse hover and keyboard navigation stay in sync
exactly as intended, even while the inbox is polling

## Linked Issues or Issue Description

**Bug report**

- **What happened:** In the Inbox, hovering a row with the mouse and
then pressing `j`/`k` (or another keyboard shortcut) does not continue
from the hovered row. If the list refreshes (which happens on the
inbox's constant polling) in the moment between hovering and pressing a
key, keyboard selection snaps back to the top row instead.
- **Expected behavior:** The keyboard cursor should be in sync with the
hovered row — pressing `j`/`k` after hovering should move relative to
the row the mouse is over.
- **Steps to reproduce:**
  1. Open the Inbox with several rows.
  2. Hover the mouse over a row partway down the list.
  3. Wait for (or trigger) a background poll/refresh of the list.
  4. Press `j` or `k`.
5. Observe selection jumps to the top of the list instead of continuing
from the hovered row.
- **Root cause:** The `[flatNavItems]` effect nulled `hoveredIndexRef`
on every list reshape. Since hover also clears the keyboard selection
band to `-1`, the fallback selection index resolved to `0`.

## What Changed

- Hoisted `navEntryKey` to module scope so it can compute a stable,
index-independent identity for a nav row from both the hover handler and
the reshape effect.
- Added `hoveredNavKeyRef` to track the hovered row's stable key
alongside the existing numeric `hoveredIndexRef`, set whenever the
pointer selects a row.
- On list reshape, re-anchor the hovered index by key (find the row with
the same key) instead of unconditionally dropping it; only drop the
hover when the row is actually gone. This mirrors the existing
`selectedIndex` key-based reconciliation.
- Added a unit test that hovers a row, reshapes the list via a simulated
poll, presses `j`, and asserts selection continues from the hovered row.

## Verification

- `pnpm --filter ./ui exec vitest run src/pages/Inbox.test.tsx` → 15/15
passing, including the new hover→`j`/`k` sync test and the existing
keyboard-nav tests.
- The new test explicitly covers the reshape-during-hover path that the
prior test suite had deferred to live/e2e verification.

## Risks

- Low risk. The change is confined to the Inbox's in-memory
hover/selection bookkeeping (two refs and one effect); it adds no new
renders (hover still paints via CSS `:hover`) and touches no data
fetching, routing, or persistence. Behavior is unchanged when the list
does not reshape; when it does, the hover now follows the same row
instead of being dropped.

## Model Used

- Claude Opus 4.8 (Anthropic), model id `claude-opus-4-8`, used with
extended thinking and tool use (file edits, running the UI test suite
locally).

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have searched GitHub for duplicate or related PRs and linked
them above
- [x] I have either (a) linked existing issues with `Fixes: #` / `Closes
#` / `Refs #` OR (b) described the issue in-PR following the relevant
issue template
- [x] I have not referenced internal/instance-local Paperclip issues or
links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip`
URLs)
- [x] My branch name describes the change (e.g. `docs/...`, `fix/...`)
and contains no internal Paperclip ticket id or instance-derived details
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [ ] All Paperclip CI gates are green
- [ ] Greptile is 5/5 with no open P2s, recommendations, or follow-ups
- [ ] I will address all Greptile and reviewer comments before
requesting merge

Co-authored-by: Claude Opus 4.8 <noreply@anthropic.com>
canary/v2026.716.0-canary.10
2026-07-16 07:50:48 -05:00
DottaandPaperclip 263316609e fix(server): avoid hot restart shutdown deadlock (#9670)
## Thinking Path

> - Paperclip is the open source control plane people use to manage AI
agents and their work
> - The server coordinates agent heartbeats and preserves eligible live
runs during a hot restart
> - Shutdown previously waited for all heartbeat scheduler work before
capturing the hot-restart snapshot
> - A deployment heartbeat can itself be in that scheduler set while
waiting for the restart, creating a circular wait
> - The missing snapshot prevents startup from classifying and adopting
the still-running agent process
> - This pull request captures the snapshot first and skips
scheduler/drain waits only for an eligible hot restart
> - The benefit is a single SIGTERM can restart the server without
losing eligible live agent runs

## Linked Issues or Issue Description

- **Preflight:** Searched open and closed PRs for the hot-restart
shutdown deadlock; no duplicate found. Reproduced on `master` and
confirmed this is core Paperclip behavior.
- **What happened:** During a hot restart initiated by a running
deployment heartbeat, the SIGTERM handler waited for
`heartbeatSchedulerInFlight` before calling
`prepareHotRestartShutdown()`. The heartbeat was itself in that set and
waited for restart completion, so shutdown never wrote the adoption
snapshot.
- **Expected behavior:** An eligible hot restart captures its snapshot
before waiting for scheduler work, preserves live child processes, and
exits after one SIGTERM.
- **Steps to reproduce:**
1. Start a heartbeat that remains active while requesting a hot restart.
  2. Send SIGTERM to the server process.
3. Observe shutdown waiting on the active scheduler task and startup
finding an intent without a shutdown snapshot.
- **Paperclip commit:** `992389480a243b97bda214227e0767eb8c3672af`
- **Deployment/install:** Self-hosted server built from source.
- **Adapter:** Not adapter-specific; reproduced with a Codex heartbeat.
- **Database/access:** Embedded PGlite; agent bearer context.
- **Environment:** Node `v22.22.2` on `Linux 6.17.0-1015-aws aarch64
GNU/Linux`.
- **Privacy:** No secrets, private logs, user paths, or internal issue
references are included.

## What Changed

- Add a focused shutdown coordinator that prepares hot-restart state
before waiting for heartbeat scheduler idleness.
- Skip scheduler-idle and graceful-drain waits only when the hot-restart
service returns `skipDrain: true`.
- Preserve normal graceful shutdown behavior when no eligible intent
exists or preparation fails.
- Add regression coverage for pending scheduler work, normal shutdown,
and preparation failure.

## Verification

- `pnpm exec vitest run server/src/shutdown.test.ts` — 3 passed.
- `pnpm --filter @paperclipai/server typecheck` — passed.
- `pnpm exec vitest run
server/src/__tests__/heartbeat-process-recovery.test.ts -t
'hot-restart'` — 3 passed, 88 skipped.
- `git diff --check origin/master...HEAD` — passed.

## Risks

- Low-to-moderate risk: shutdown ordering changes, but only the
explicitly eligible hot-restart path bypasses scheduler-idle and
run-drain waits.
- Normal shutdown and hot-restart preparation failures retain the
existing graceful behavior.

> For core feature work, check [`ROADMAP.md`](ROADMAP.md) first and
discuss it in `#dev` before opening the PR. This is a focused bug fix
and does not duplicate planned roadmap work.

## Model Used

- OpenAI Codex coding agent; exact runtime model ID and context-window
size are not exposed to the agent. Tool use, shell execution, repository
editing, and test execution were enabled.

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have searched GitHub for duplicate or related PRs and linked
them above
- [x] I have either (a) linked existing issues with `Fixes: #` / `Closes
#` / `Refs #` OR (b) described the issue in-PR following the relevant
issue template
- [x] I have not referenced internal/instance-local Paperclip issues or
links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip`
URLs)
- [x] My branch name describes the change and contains no internal
Paperclip ticket id or instance-derived details
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [x] I have updated relevant documentation to reflect my changes (no
documentation change required for this internal shutdown-order fix)
- [x] I have considered and documented any risks above
- [x] All Paperclip CI gates are green
- [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups
- [x] I will address all Greptile and reviewer comments before
requesting merge

---------

Co-authored-by: Paperclip <noreply@paperclip.ing>
canary/v2026.716.0-canary.9
2026-07-16 05:09:56 -05:00
DottaandPaperclip 992389480a fix(server): restore hot-restart run adoption (#9647)
## Thinking Path

> - Paperclip is the open source app people use to manage AI agents for
work.
> - The local heartbeat/runtime subsystem starts long-running local
agent processes and records their run state.
> - Operators sometimes need to rebuild and restart the Paperclip server
while local agent processes are still alive.
> - A normal restart should remain conservative, but a guarded
production hot restart needs an explicit marker, startup reconciliation,
and an inspectable report.
> - The broader hot-restart PR is currently merge-conflicted, so this
pull request lands the minimal server-side recovery path on current
`master`.
> - The benefit is that deploy operators can restart from a current
branch without reverting production changes and without marking adopted
live runs as `process_lost`.

## Linked Issues or Issue Description

No public GitHub issue exists for this deploy-safety fix.

Bug fix:

- What happened: the current deployable `master` branch did not include
the hot-restart marker CLI, startup adoption report path, or health
version proof needed by guarded service restarts.
- Expected behavior: a deploy operator can write a one-shot marker
before restarting, the old server snapshots eligible running child
processes, the new server reports adopted/finalized/lost runs, and
adopted live runs are not reaped as `process_lost`.
- Steps to reproduce: restart a server with running local child-process
heartbeat runs without the marker/adoption path; startup orphan reaping
has no adoption metadata and treats live detached children as lost.
- Paperclip version/commit: fixed on top of `master` at `b606869a6`.
- Deployment mode: production/local-service style deployments that
rebuild and restart the primary `paperclip.service`.
- Related PR: Refs #9628. This PR intentionally lands a smaller
deploy-safe subset because #9628 is currently merge-conflicted.
- Duplicate search: searched public PRs/issues for `hot restart` and
`process_lost adoption`; #9628 is the directly related prior
implementation.

## What Changed

- Added `scripts/request-hot-restart.ts` to write a one-shot hot-restart
intent marker under `PAPERCLIP_HOME`.
- Added `server/src/services/hot-restart.ts` for intent/report path
resolution, parsing, atomic writes, shutdown snapshots, and marker
cleanup.
- Wired server shutdown/startup so explicit hot restarts snapshot active
runs, skip the normal heartbeat drain, reconcile live child processes on
boot, and write `hot-restart-report.json`.
- Preserved adopted run metadata so normal orphan reaping does not
regress adopted live runs to `process_lost`.
- Added `serverVersion` health proof alongside existing `version`, plus
docs and regression coverage.

## Verification

- `pnpm vitest run server/src/__tests__/health.test.ts
server/src/__tests__/heartbeat-process-recovery.test.ts` — 2 files
passed, 100 tests passed.
- `pnpm --filter @paperclipai/server typecheck`
- `env PAPERCLIP_HOME="$PAPERCLIP_RUN_SCRATCH_DIR/hot-restart-cli-smoke"
pnpm --filter @paperclipai/server exec tsx
../scripts/request-hot-restart.ts --server-pid 12345`
- Branch ancestry checked after `git fetch origin master`:
`origin/master` was `b606869a6`, and `HEAD..origin/master` was empty.

## Risks

- Medium risk: process adoption depends on PID/PGID metadata and the
service manager leaving child processes alive for the guarded restart.
- Normal restarts remain conservative, but an incorrect marker PID
intentionally falls back to graceful drain instead of adoption.
- The PR is server-only and does not include the broader
UI/experimental-setting work from #9628.

> For core feature work, check [`ROADMAP.md`](ROADMAP.md) first and
discuss it in `#dev` before opening the PR. Feature PRs that overlap
with planned core work may need to be redirected — check the roadmap
first. See `CONTRIBUTING.md`.

## Model Used

- OpenAI GPT-5 via Codex coding agent in a Paperclip execution
workspace; tool use and shell/code execution enabled; context window not
surfaced by this runtime.

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have searched GitHub for duplicate or related PRs and linked
them above
- [x] I have either (a) linked existing issues with `Fixes: #` / `Closes
#` / `Refs #` OR (b) described the issue in-PR following the relevant
issue template
- [x] I have not referenced internal/instance-local Paperclip issues or
links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip`
URLs)
- [x] My branch name describes the change (e.g. `docs/...`, `fix/...`)
and contains no internal Paperclip ticket id or instance-derived details
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [x] All Paperclip CI gates are green
- [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups
- [x] I will address all Greptile and reviewer comments before
requesting merge

---------

Co-authored-by: Paperclip <noreply@paperclip.ing>
canary/v2026.716.0-canary.8
2026-07-16 02:46:09 -05:00
DottaandClaude Opus 4.8 cf7711ecc5 feat(ui): explain when a message won't reopen a blocked issue (Rule C, PAP-13554) (#9417)
## Thinking Path

> - Paperclip is the open source app people use to manage AI agents for
work
> - When an agent's task is `blocked`, humans often comment on the issue
thread expecting it to reopen and resume
> - If the issue stays `blocked` because an unresolved (not-done)
blocker still gates the reopen path, the UI said nothing — the human
"sent a message and nothing happened" (a real silent-failure report)
> - That silence makes the product feel broken even though the gate is
working as designed
> - This pull request adds Rule C copy to the existing
`IssueBlockedNotice` surface: when a comment won't reopen a blocked
issue, it explains why and names the deepest unresolved blocker leaf
with its status
> - The benefit is that the human immediately understands the task is
*paused, not stuck*, and knows exactly which task to act on to unblock
it

## Linked Issues or Issue Description

<!-- No public GitHub issue — describing the underlying problem inline
(path B), following the feature issue template. -->

**Problem or motivation**

A human comments on a `blocked` issue expecting it to move back to
`todo` and resume. When the reopen gate keeps it blocked because an
unresolved (not-`done`) blocker remains, nothing in the UI communicates
this, so the user perceives a dropped message ("I sent a message and
nothing happened").

**Proposed solution**

Reuse the existing amber `IssueBlockedNotice` surface (the designated
blocked/recovery surface — no new component). When a message won't
reopen a blocked issue, the notice states that it won't reopen yet,
names the unresolved blocker leaf with its status (e.g. "Still blocked
by PAP-XXXXX (in progress)"), and reassures that it reopens
automatically once the blocker is done. UI-only; no server change.

**Alternatives considered**

Adding a server signal (a reopen-suppressed reason on the comment/notice
payload) was considered but rejected as unnecessary — the
unresolved-blocker set is already available client-side, so the copy is
derived in the component. Done-but-pending-finalize blockers are `done`,
so they fall out of the unresolved set into the standard reopen (Rule B)
path and are correctly not shown as reopen-suppressed.

## What Changed

- `ui/src/components/IssueBlockedNotice.tsx`: added reopen-suppressed
messaging for `blocked` issues that still have unresolved blockers — a
lead sentence ("a message won't reopen it yet, then it reopens
automatically"), the named unresolved blocker leaf with its status, and
an "and N other task(s)" summarization when multiple blockers remain.
- `ui/src/components/IssueBlockedNotice.test.tsx`: added/updated tests
covering the single, nested-chain (deepest-leaf), multiple-blocker, and
empty-blocker states, plus the not-a-reopen-case (`in_progress`) path.
- `ui/storybook/stories/issue-blocked-notice.stories.tsx`: new Storybook
stories rendering each notice state for copy review.

## Verification

- `cd ui && tsc -b` — typecheck clean (previously failed TS2322 on the
story meta; fixed by a default `args`).
- Vitest: `IssueBlockedNotice.test.tsx` green (single / nested /
multiple / empty / in-progress states).
- Storybook stories rendered at 1440×900 for all four states;
screenshots posted on the tracking issue.
- UXDesigner reviewed the notice copy and signed off (no copy edits
required).

## Risks

Low risk. UI-only, additive copy on an already-shipped amber notice
surface; no server or schema changes. The reopen behavior itself is
unchanged — this only explains the existing gate. Worst case is copy
wording, which had a design review.

## Model Used

Claude — claude-opus-4-8 (Opus 4.8), extended thinking, with tool use /
code execution in the Paperclip harness.

---

- [x] I searched the GitHub PR list for similar/duplicate PRs before
opening this one.

---------

Co-authored-by: Claude Opus 4.8 <noreply@anthropic.com>
2026-07-16 02:34:53 -05:00
DottaandPaperclip 4f9894df44 fix(server): bound accepted-interaction continuation recovery (#9656)
## Thinking Path

> - Paperclip is the open source app people use to manage AI agents for
work
> - Heartbeat recovery keeps assigned issues moving when a run or
continuation path disappears
> - Accepted issue-thread interactions can create a continuation wake
after an agent previously parked for review
> - The recovery sweep could requeue that accepted-interaction wake
while the queued-run gate cancelled it using the older pre-acceptance
park summary
> - That cancellation path had no bound, so recovery could repeat the
same wake and cancellation indefinitely
> - This pull request makes accepted-interaction evidence supersede the
older park and caps repeated recovery cancellations at three attempts
> - The benefit is that accepted work resumes normally, while genuine
repeated failures become a visible dependency wait or escalation instead
of a cancel loop

## Linked Issues or Issue Description

Refs #9331

The accepted-interaction continuation recovery added by #9331 can
encounter a stale continuation summary written before approval. The
sweep requeues a continuation carrying the accepted interaction
timestamp, but queued-run invalidation cancels it because the older
summary says to wait for review. Recovery then sees the accepted
interaction without a successful run and requeues again. This PR
prevents that stale-summary cancellation and adds a bounded fallback if
three equivalent cancellations have already occurred.

## What Changed

- Let queued continuation wakes with a parseable `interactionResolvedAt`
bypass a pre-acceptance waiting-for-review park summary.
- Count consecutive unsuccessful continuation runs for the same issue
and agent since interaction acceptance; after three review-park
cancellations, convert a real dependency wait or use the existing
visible escalation path.
- Add focused regression coverage for the park bypass, unchanged
non-interaction park behavior, below-cap requeue, cap escalation, and
successful-run skip.
- Document the accepted-interaction precedence and bounded requeue
contract in execution semantics §9.2.

## Verification

- `pnpm vitest run
server/src/__tests__/heartbeat-process-recovery.test.ts -t "accepted
interaction continuation recovery|accepted interaction recovery after
its continuation succeeds|requeues accepted interaction continuations
stranded"`
- `pnpm vitest run
server/src/__tests__/heartbeat-stale-queue-invalidation.test.ts -t
"pre-acceptance review park|continuation summary parks executor work"`
- `pnpm --filter @paperclipai/server typecheck`

## Risks

- Low risk: the park bypass only applies when the queued context
contains a parseable interaction resolution timestamp.
- The retry bound is scoped to unsuccessful `issue_continuation_needed`
runs for the same company, issue, agent, error code, and post-acceptance
time window.
- No schema, migration, API, or UI changes.

> For core feature work, check [`ROADMAP.md`](ROADMAP.md) first and
discuss it in `#dev` before opening the PR. Feature PRs that overlap
with planned core work may need to be redirected — check the roadmap
first. See `CONTRIBUTING.md`.

## Model Used

- OpenAI Codex, exact model ID `gpt-5.5`, high-reasoning coding mode
with repository tool use and command execution; context-window size was
not exposed by the runtime.

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have searched GitHub for duplicate or related PRs and linked
them above
- [x] I have either (a) linked existing issues with `Fixes: #` / `Closes
#` / `Refs #` OR (b) described the issue in-PR following the relevant
issue template
- [x] I have not referenced internal/instance-local Paperclip issues or
links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip`
URLs)
- [x] My branch name describes the change (e.g. `docs/...`, `fix/...`)
and contains no internal Paperclip ticket id or instance-derived details
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [x] All Paperclip CI gates are green
- [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups
- [x] I will address all Greptile and reviewer comments before
requesting merge

---------

Co-authored-by: Paperclip <noreply@paperclip.ing>
2026-07-16 02:34:20 -05:00
3124dd0f1e feat(server): recovery observability report and rate alert (#9644)
## Thinking Path

> - Paperclip is the open source app people use to manage AI agents for
work
> - When a run is stranded (process lost, adapter failure, a finished
run with no disposition, an over-eager inactivity kill), the harness
opens a *recovery action* and wakes an owner to recover it
> - Recovery volume regressed sharply in one week — 3.26% of all runs vs
a ~1.2% monthly norm, 5–8x the prior volume — and nobody noticed until
it was ~194 actions deep, because there was no way to *see* the recovery
rate
> - We also could not see which causes drive recovery, nor how often a
manager ends up doing the deliverable work themselves instead of handing
it back to the original owner (the product goal is that managers doing
the work stays rare)
> - This pull request adds a recovery-observability report + API
endpoint: weekly rate normalized per run, a threshold alert, the cause
taxonomy live from the ledger, and the handed-back vs owner-completed
ratio and per-cause routing outcomes
> - The benefit is that a recovery regression like that week is caught
by a threshold instead of by a human noticing it by feel, and each
recovery playbook row can be verified in production

## Linked Issues or Issue Description

**Feature.**

**Problem or motivation**

Recovery takeovers are a first-class exception path
(`issue_recovery_actions`), but there is no aggregate view of them. A
week where the recovery rate tripled went unnoticed until it was deep.
There is no signal for (a) the per-run recovery rate over time, (b)
which cause + run error code drives it, or (c) whether the recovery
owner hands the task back to the original assignee or ends up doing the
deliverable work themselves.

**Proposed solution**

A read-only report service and `GET
/companies/:companyId/recovery-observability` endpoint that surfaces the
weekly rate, a threshold alert, the cause taxonomy, the hand-back ratio,
and per-cause routing outcomes.

**Alternatives considered**

Adding `handed_back` / `owner_completed` to the recovery-action outcome
vocabulary and writing them at resolution time. Rejected for this
change: the distinction is derivable from the recovery owner, the
recorded return owner, and where the source issue actually landed, so
the report works against all historical data without a backfill.

**Roadmap alignment**

Implements the recovery-observability line of the approved
recovery-takeover plan (make regressions visible via a threshold rather
than by human feel); no schema or write-path change.

## What Changed

- Add `server/src/services/recovery-observability.ts`:
- `recoveryObservabilityService(db).report(companyId, { weeks,
thresholdPercent, now })` returns weekly rates (recovery actions / runs,
Monday-anchored to match the retrospective), a `cause` +
`latestRunErrorCode` breakdown, a handed-back vs owner-completed
summary, and per-cause routing outcomes.
- `evaluateRecoveryRateAlert(weekly, thresholdPercent)` — a pure
function (default threshold 2% of runs) returning the breached weeks and
whether the latest week regressed.
- `classifyRecoveryHandoff(...)` — a pure classifier deriving
`self_recovery` / `handed_back` / `owner_completed` from the recovery
owner, return owner, and final issue landing.
- Add `GET /companies/:companyId/recovery-observability` (optional
`weeks` and `threshold` query params) to the existing dashboard router.
- The `weeks` window is bounded (`MAX_WINDOW_WEEKS = 104`,
service-authoritative and re-clamped at the route) so a large query
value can't over-allocate the per-week array.
- Add tests: unit coverage for the alert and the classifier, plus an
embedded-Postgres integration test that seeds synthetic runs and
recovery actions crossing 2% and asserts the alert fires and the
hand-back ratio is computed.

## Verification

- `CI=1 NODE_ENV=development npx vitest run
server/src/__tests__/recovery-observability.test.ts` — 10/10 pass
(includes the synthetic 2%-crossing alert case and the hand-back ratio
case).
- Rendered against a live database of 300+ recovery actions: the weekly
rates reproduce the retrospective (e.g. 1.37% / 1.53% / 0.65% / 0.86% /
1.37% for early-June weeks), the alert fires on the two most recent
weeks (3.15% and 3.05%, both over 2%), and the hand-back summary shows
owner-completed ≈ 73% vs handed-back ≈ 27% — matching the observed
"managers keep ~80% of takeovers".

## Risks

- Low risk. Read-only: adds one GET endpoint and a service; no schema,
migration, or write-path changes. The hand-back classification reads the
source issue's current assignee/status, so a much-later reassignment
could reclassify a historical action — acceptable for an aggregate trend
view.

## Model Used

- Claude, `claude-opus-4-8` (Opus 4.8), extended thinking, tool use /
code execution.

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have searched GitHub for duplicate or related PRs and linked
them above
- [x] I have either (a) linked existing issues with `Fixes: #` / `Closes
#` / `Refs #` OR (b) described the issue in-PR following the relevant
issue template
- [x] I have not referenced internal/instance-local Paperclip issues or
links
- [x] My branch name describes the change and contains no internal
Paperclip ticket id
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [ ] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [ ] All Paperclip CI gates are green
- [ ] Greptile is 5/5 with no open P2s, recommendations, or follow-ups
- [ ] I will address all Greptile and reviewer comments before
requesting merge

🤖 Generated with [Claude Code](https://claude.com/claude-code)

---------

Co-authored-by: Paperclip <noreply@paperclip.ing>
Co-authored-by: Claude Opus 4.8 <noreply@anthropic.com>
canary/v2026.716.0-canary.7
2026-07-16 02:34:00 -05:00
f44a002b8d fix(ui): restore prefix-aware company export/import links (#6648)
## Thinking Path

> - Paperclip is the open source app people use to manage AI agents for
work
> - Each company workspace in the web UI is mounted under a URL prefix
(e.g. `/NEU/company/...`), and `Link` from `@/lib/router` applies that
prefix automatically via `applyCompanyPrefix`
> - Company Settings rendered its Org Chart, Export, Import, and Cloud
Upstream buttons as raw `<a href>` anchors, which drop the prefix, so
those pages 404 on prefixed instances (#2910);
`CompanyExport.filePathFromLocation` also failed to locate
`/company/export/files/` inside prefixed URLs, breaking export file
previews
> - #2951 fixed the Settings links with `<Link to>` plus tests, but the
sandbox-settings work in #4415 reverted the links back to `<a href>`,
silently reintroducing the bug (#6647)
> - This pull request restores the prefix-aware `<Link>` for all four
Settings links, normalizes the pathname with `toCompanyRelativePath()`
before matching the export-files marker, and adds regression tests
covering every route so the fix cannot be lost again
> - The benefit is that export/import/org-chart/cloud-upstream
navigation and export file previews work on every prefixed deployment

## Linked Issues or Issue Description

Fixes: #6647
Refs #2910 (original report: `/company/export` → prefix `COMPANY` → not
found)
Refs #2951 (original fix with `<Link to>` + tests — merged, then lost)
Refs #4415 (sandbox settings PR that reverted Settings back to `<a
href>`)

## What Changed

- **`ui/src/pages/CompanySettings.tsx`**: use `Link` from `@/lib/router`
for the Org Chart, Export, Import, and Cloud Upstream buttons (replacing
raw `<a href>`)
- **`ui/src/pages/CompanyExport.tsx`**: resolve file paths from prefixed
URLs by normalizing with `toCompanyRelativePath()` before matching
`/company/export/files/`
- **`ui/src/lib/company-routes.test.ts`**: regression tests for
export/import/cloud-upstream/org prefix rewriting, double-prefix
prevention, and export file URL normalization

## Verification

```bash
pnpm vitest run ui/src/lib/company-routes.test.ts
```

Manual:

1. Open `http://localhost:3100/NEU/company/settings` (or your company
prefix).
2. Click **Export** / **Import** — URL should stay under
`/:prefix/company/...`.
3. On export, select a file — URL should be
`/:prefix/company/export/files/...` and preview should load.

The change is navigation-target-only (no visual/layout changes), so
before/after is shown as the resolved URLs:

| Link | Before (prefix dropped → not found) | After |
|------|-------------------------------------|-------|
| Export | `/company/export` | `/NEU/company/export` |
| Import | `/company/import` | `/NEU/company/import` |
| Org Chart | `/org` | `/NEU/org` |
| Cloud Upstream | `/company/settings/cloud-upstream` |
`/NEU/company/settings/cloud-upstream` |

## Risks

Low — same approach as #2951; only navigation/parsing, no API changes.

## Model Used

- Original implementation: authored by @qbamca in Cursor (agentic
editor; the session's exact model ID was not recorded)
- Follow-up commit (merge-conflict resolution) and this description
update: Claude Fable 5 (Anthropic, `claude-fable-5`, extended thinking,
agentic tool use), operated by the Commit Capital triage team

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have searched GitHub for duplicate or related PRs and linked
them above
- [x] I have either (a) linked existing issues with `Fixes: #` / `Closes
#` / `Refs #` OR (b) described the issue in-PR following the relevant
issue template
- [x] I have not referenced internal/instance-local Paperclip issues or
links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip`
URLs)
- [x] My branch name describes the change (e.g. `docs/...`, `fix/...`)
and contains no internal Paperclip ticket id or instance-derived details
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [x] I have updated relevant documentation to reflect my changes (no
doc changes required — behavior matches documented routing)
- [x] I have considered and documented any risks above
- [x] All Paperclip CI gates are green
- [ ] Greptile is 5/5 with no open P2s, recommendations, or follow-ups
(pending re-review of the conflict-resolution commit)
- [x] I will address all Greptile and reviewer comments before
requesting merge

Co-authored-by: Jakub Mikiciuk <jmikiciuk@igus.net>
Co-authored-by: Cursor <cursoragent@cursor.com>
Co-authored-by: Andrew Aymeloglu <aaymeloglu@gmail.com>
Co-authored-by: Claude Fable 5 <noreply@anthropic.com>
canary/v2026.716.0-canary.6
2026-07-15 22:52:40 -05:00
DottaandPaperclip df2404d443 fix(codex): count raw child output as activity (#9632)
## Thinking Path

> - Paperclip is the open source control plane teams use to manage AI
agents and their work
> - The Codex local adapter supervises CLI child processes and
terminates genuinely silent runs
> - The existing inactivity timer only recognized parsed JSONL stdout
events as activity
> - Long verification commands can emit ordinary stdout or stderr while
producing no JSONL, so healthy children could be killed
> - This pull request makes the watchdog observe raw child-process
output before filtering or parsing
> - The benefit is that long typecheck, build, and test phases survive
while truly silent children remain bounded

## Linked Issues or Issue Description

- **Bug:** The Codex output-inactivity watchdog could terminate healthy
runs during long verification phases because non-JSON stdout and stderr
did not reset its timer.
- **Expected:** Any bytes emitted by the child process count as output
activity; only a child with no stdout or stderr for the configured
interval is terminated.
- **Reproduction:** Configure a short `outputInactivityTimeoutMs`, run a
Codex child that periodically emits plain-text verification progress
without JSONL events, and observe the old monitor firing despite
continued output.
- **Deployment mode:** Local `codex_local` adapter execution.
- Related implementation: #5017
- Related recovery behavior: #8680

## What Changed

- Reset the Codex inactivity monitor on every non-empty stdout or stderr
chunk before stderr noise filtering.
- Track raw output chunk and byte counts in monitor diagnostics while
retaining parsed JSONL event counts.
- Add regression coverage for more than 21 simulated minutes of non-JSON
verification output and retain silent-child termination coverage.
- Document that `outputInactivityTimeoutMs` observes raw child output
and that `null` still disables the monitor.

## Verification

- `/srv/paperclip/home/paperclipai/paperclip/node_modules/.bin/vitest
run
packages/adapters/codex-local/src/server/output-inactivity-monitor.test.ts
packages/adapters/codex-local/src/server/output-inactivity-monitor.integration.test.ts`
- `/srv/paperclip/home/paperclipai/paperclip/node_modules/.bin/tsc -p
packages/adapters/codex-local/tsconfig.json --noEmit`

## Risks

- Low risk: the monitor becomes more conservative and may allow a
noisy-but-stuck child to run longer, but the configured hard timeout and
platform silent-run safety net remain unchanged.
- No schema, API, migration, or UI changes.

> For core feature work, check [`ROADMAP.md`](ROADMAP.md) first and
discuss it in `#dev` before opening the PR. Feature PRs that overlap
with planned core work may need to be redirected — check the roadmap
first. See `CONTRIBUTING.md`.

## Model Used

- OpenAI Codex CLI coding agent; runtime model ID and context-window
size were not exposed to the agent. Used repository/tool access, code
execution, and focused test verification.

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have searched GitHub for duplicate or related PRs and linked
them above
- [x] I have either (a) linked existing issues with `Fixes: #` / `Closes
#` / `Refs #` OR (b) described the issue in-PR following the relevant
issue template
- [x] I have not referenced internal/instance-local Paperclip issues or
links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip`
URLs)
- [x] My branch name describes the change (e.g. `docs/...`, `fix/...`)
and contains no internal Paperclip ticket id or instance-derived details
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [x] All Paperclip CI gates are green
- [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups
- [x] I will address all Greptile and reviewer comments before
requesting merge

---------

Co-authored-by: Paperclip <noreply@paperclip.ing>
canary/v2026.716.0-canary.5
2026-07-15 21:49:30 -05:00
DottaandPaperclip 8eff54bc47 [codex] Explain AWS secret creation failures in the UI (#9645)
## Thinking Path

> - Paperclip is the open source control plane operators use to manage
AI-agent companies.
> - Operators can store runtime secrets in provider vaults such as AWS
Secrets Manager.
> - The server already preserves sanitized AWS failure details,
including the failed operation, required IAM capability, region, and
safe recovery options.
> - The create-secret dialog reduced that structured response to a
generic message, leaving operators unable to understand or fix failed
AWS writes.
> - This pull request keeps the safe structured error through the UI and
presents concise, actionable diagnostics without exposing raw AWS
principals or account details.
> - The benefit is that operators can correct IAM access or link an
existing AWS secret immediately instead of debugging an opaque failure.

## Linked Issues or Issue Description

No public issue was found for this exact UI gap.

Bug report:
- What happened: creating a Paperclip-managed value in AWS Secrets
Manager could fail with a generic dialog error even though the API
returned safe, actionable provider details.
- Expected behavior: the dialog should identify the AWS operation,
required IAM capability, region, provider vault, and safe alternative
while keeping raw cloud-provider details redacted.
- Steps to reproduce: configure an AWS Secrets Manager provider vault
without `secretsmanager:CreateSecret`, then create a Paperclip-managed
secret using that vault.
- Paperclip version/commit: current `master` before this PR.
- Deployment mode: Paperclip server with an AWS Secrets Manager provider
vault.

Related prior server-side propagation work:
- Refs #9161

## What Changed

- Preserve the structured `ApiError` returned by failed create-secret
mutations instead of reducing it to a string.
- Render AWS-specific, sanitized diagnostics with the required IAM
capability, region, provider vault, operation, and external-reference
recovery option.
- Add a full dialog render regression test that verifies actionable
details appear and raw AWS ARN/account information does not.

## Verification

- `pnpm exec vitest run ui/src/pages/Secrets.render.test.tsx` — 1 file
passed, 15 tests passed.
- `pnpm --filter @paperclipai/ui typecheck` — passed.
- `pnpm check:token-gates` — all gates clean.
- `git diff --check public-gh/master...HEAD` — passed.

### Visual Verification

QA verified both states in Chromium at head `357cd2271` using the real
`Secrets` component and confirmed that raw AWS account, ARN,
assumed-role, and provider exception details are absent from the
rendered DOM.

**AWS access-denied diagnostics**

![AWS access-denied
diagnostics](https://pages.paperclip.ing/pap-14130-secret-error/aws-access-denied.png)

**Generic non-AWS fallback**

![Generic non-AWS
fallback](https://pages.paperclip.ing/pap-14130-secret-error/generic-error.png)

## Risks

Low risk. The change only affects failed create-secret presentation in
the UI; successful secret creation, API contracts, schema, and
migrations are unchanged. The structured details are server-sanitized,
and the regression test confirms raw AWS principal/account data is not
rendered.

> For core feature work, check [`ROADMAP.md`](ROADMAP.md) first and
discuss it in `#dev` before opening the PR. Feature PRs that overlap
with planned core work may need to be redirected — check the roadmap
first. See `CONTRIBUTING.md`.

## Model Used

OpenAI `gpt-5.4` via Codex CLI, with tool-enabled repository editing,
shell execution, Git, GitHub, and Paperclip API access. Reasoning mode
and exact context-window size were not exposed by the runtime.

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have searched GitHub for duplicate or related PRs and linked
them above
- [x] I have either (a) linked existing issues with `Fixes: #` / `Closes
#` / `Refs #` OR (b) described the issue in-PR following the relevant
issue template
- [x] I have not referenced internal/instance-local Paperclip issues or
links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip`
URLs)
- [x] My branch name describes the change (e.g. `docs/...`, `fix/...`)
and contains no internal Paperclip ticket id or instance-derived details
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [x] All Paperclip CI gates are green
- [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups
- [x] I will address all Greptile and reviewer comments before
requesting merge

---------

Co-authored-by: Paperclip <noreply@paperclip.ing>
2026-07-15 21:47:07 -05:00
DottaandPaperclip 8368fb30b0 fix(routines): coalesce sub-hourly catch-up runs (#9649)
## Thinking Path

> - Paperclip is the open source control plane people use to run
AI-agent companies.
> - Scheduled routines support catch-up policies when the server resumes
after missed cron ticks.
> - The existing capped replay policy dispatched once per missed tick,
which can flood the board after downtime for frequent schedules.
> - Sub-hourly routines usually need one prompt catch-up execution
rather than historical per-tick replay, while hourly-or-slower schedules
may rely on the existing behavior.
> - This pull request coalesces missed sub-hourly ticks into one
execution and keeps the slower-schedule behavior unchanged.
> - The benefit is bounded recovery work without changing the semantics
of lower-frequency scheduled routines.

## Linked Issues or Issue Description

### What happened?

When a scheduled routine using `enqueue_missed_with_cap` resumes after
several missed sub-hourly cron ticks, Paperclip dispatches one catch-up
execution for every missed tick. Those executions arrive in a
same-second burst and can flood the board with duplicate-looking work.

### Expected behavior

Sub-hourly schedules should advance past all missed ticks but dispatch
exactly one catch-up execution. Hourly-or-slower schedules should retain
capped per-tick replay.

### Steps to reproduce

1. Build Paperclip from `master` and create a routine with a sub-hourly
cron schedule and `catchUpPolicy: enqueue_missed_with_cap`.
2. Set its persisted `nextRunAt` far enough in the past to cover several
scheduled occurrences.
3. Run routine catch-up processing.
4. Observe multiple catch-up dispatches instead of one coalesced
execution.

### Paperclip version or commit

Reproduced on `master` before this PR.

### Deployment mode

Built from source in local development with embedded PGlite.

## What Changed

- Classify sub-hourly cadence from timezone-aware scheduled occurrences,
avoiding daily multi-minute false positives while supporting schedules
restricted to active days.
- Coalesce all missed sub-hourly ticks into one catch-up dispatch while
advancing `nextRunAt` to the next future occurrence.
- Preserve capped per-tick replay for hourly-or-slower schedules.
- Clarify the catch-up policy labels in both routine editing surfaces.
- Add regression coverage for both the coalesced and preserved
behaviors.

## Verification

- `pnpm exec vitest run server/src/__tests__/routines-service.test.ts
--testNamePattern='coalesces multiple missed sub-hourly ticks|continues
replaying each missed hourly tick|continues replaying missed ticks for
daily schedules with multiple minute values|coalesces sub-hourly
schedules restricted to weekdays'` — 4 passed.
- `pnpm check:token-gates` — all gates clean.
- `git diff --check origin/master...HEAD` — clean.

## Risks

- Low-to-moderate behavioral risk: sub-hourly routines using
`enqueue_missed_with_cap` now intentionally receive one recovery
execution instead of one per missed tick.
- Hourly-or-slower schedules retain their previous capped replay
behavior, limiting the compatibility surface.
- No schema, migration, workflow, or lockfile changes.

> For core feature work, check [`ROADMAP.md`](ROADMAP.md) first and
discuss it in `#dev` before opening the PR. Feature PRs that overlap
with planned core work may need to be redirected — check the roadmap
first. See `CONTRIBUTING.md`.

## Model Used

- OpenAI Codex CLI with GPT-5.5, medium reasoning, code execution and
repository tool use; the runtime did not expose a context-window size.

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have searched GitHub for duplicate or related PRs and linked
them above
- [x] I have either (a) linked existing issues with `Fixes: #` / `Closes
#` / `Refs #` OR (b) described the issue in-PR following the relevant
issue template
- [x] I have not referenced internal/instance-local Paperclip issues or
links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip`
URLs)
- [x] My branch name describes the change (e.g. `docs/...`, `fix/...`)
and contains no internal Paperclip ticket id or instance-derived details
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [x] All Paperclip CI gates are green
- [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups
- [x] I will address all Greptile and reviewer comments before
requesting merge

---------

Co-authored-by: Paperclip <noreply@paperclip.ing>
2026-07-15 21:46:10 -05:00
DottaandPaperclip bd7c0d5f83 fix(issues): deduplicate repeated creates (#9650)
## Thinking Path

> Paperclip already treats issue creation as a company-scoped mutation,
but retries and parallel agent heartbeats can submit the same create
more than once. Client instructions cannot provide at-most-once behavior
under concurrency, so the guard belongs in the server transaction. This
change adds an explicit company-scoped idempotency contract, a
conservative fallback for recent open same-parent titles, and run
attribution for auditability. Advisory transaction locks serialize
competing requests before lookup/insert, avoiding the race that affected
the prior attempt.

## Linked Issues or Issue Description

Fixes #6529.

This is a clean replacement for #6936, which was closed because it mixed
unrelated changes and its check-then-insert implementation was not
concurrency-safe. Unlike that attempt, this PR is scoped to eight files,
uses a dedicated idempotency-key table, and serializes duplicate
candidates inside the create transaction.

## What Changed

- Accept optional `idempotencyKey` and `allowDuplicate` fields on issue
creation.
- Replay the existing issue with HTTP 200 and deduplication metadata for
a repeated company/key pair.
- Deduplicate recent open issues with the same company, parent, and
normalized title for 48 hours unless `allowDuplicate: true` is supplied.
- Persist idempotency mappings in a company-scoped table and serialize
competing creates with transaction advisory locks.
- Populate `originRunId` from `X-Paperclip-Run-Id` for agent/manual
creates when the body does not provide an origin run.
- Add route integration coverage for key replay, title fallback, bypass,
closed/old recreation, company scoping, and run attribution.

## Verification

- `pnpm exec vitest run
server/src/__tests__/issue-create-deduplication-routes.test.ts` — 7
tests passed.
- `pnpm --filter @paperclipai/db typecheck` — passed, including
migration numbering and safety checks.
- `pnpm --filter @paperclipai/shared typecheck` — passed.
- `pnpm --filter @paperclipai/server typecheck` — passed.
- `git diff --check origin/master...HEAD` — passed.
- `pnpm exec vitest run
server/src/__tests__/issue-assigned-backlog-contract-routes.test.ts
server/src/__tests__/issue-create-deduplication-routes.test.ts` — 10
tests passed after the service-contract compatibility fix.

## Risks

- The title fallback intentionally treats normalized same-parent titles
as duplicates for 48 hours; callers creating intentionally repeated
titles must send `allowDuplicate: true`.
- Advisory locks use hashed duplicate keys, so an extremely unlikely
hash collision can serialize unrelated creates but cannot merge their
lookup results.
- Deleting an issue cascades its idempotency mapping, allowing the same
key to create a replacement later.

## Model Used

- OpenAI `gpt-5.6-sol`, high reasoning effort, Codex CLI with
repository, shell, GitHub CLI, and Paperclip API tool access.

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have searched GitHub for duplicate or related PRs and linked
them above
- [x] I have either (a) linked existing issues with `Fixes: #` / `Closes
#` / `Refs #` OR (b) described the issue in-PR following the relevant
issue template
- [x] I have not referenced internal/instance-local Paperclip issues or
links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip`
URLs)
- [x] My branch name describes the change (e.g. `docs/...`, `fix/...`)
and contains no internal Paperclip ticket id or instance-derived details
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [x] All Paperclip CI gates are green
- [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups
- [x] I will address all Greptile and reviewer comments before
requesting merge

---------

Co-authored-by: Paperclip <noreply@paperclip.ing>
2026-07-15 21:45:11 -05:00
DottaandPaperclip ea0e899905 fix(search): honor extract match limits + harden pr-gardening candidate discovery (#9652)
## Thinking Path

> - Paperclip is the open source app people use to manage AI agents for
work
> - The `/pr-gardening` skill drives a bundled agent that scans a
company's issues for those linked to open GitHub PRs, then reports on
their state; it relies on the server's company-search **extract**
endpoint to pull PR references out of issue bodies
> - Two gaps surfaced during end-to-end QA of the gardening workflow:
the extract service silently ignored a per-issue match cap, so callers
could not bound how many matches came back per issue, and the skill's
candidate-discovery scripts fell over on large repos and on issues that
referenced deleted PRs
> - Left unaddressed, the gardener either truncated its scan
unpredictably or aborted outright, so it could not reliably enumerate PR
candidates
> - This pull request honors an explicit `matchesPerIssue` limit in the
extract search API and hardens the skill's candidate discovery against
missing/unavailable PRs and oversized `gh` output
> - The benefit is a PR-gardening workflow that scans deterministically
and finishes cleanly on real-world companies

## Linked Issues or Issue Description

No pre-existing public GitHub issue — describing the bug in-PR following
the bug report template (`.github/ISSUE_TEMPLATE/bug_report.yml`).

### What happened?

The company-search extract endpoint accepted a per-issue match limit but
did not apply it, returning matches capped only by the old hardcoded
constant regardless of the caller's request. Separately, the
`/pr-gardening` skill's candidate-discovery scripts crashed when a
scanned issue referenced a deleted PR (GitHub `Not Found (HTTP 404)` /
GraphQL `Could not resolve to a PullRequest`) and could exceed the
default `gh` output buffer on large result sets, aborting the whole
scan.

### Expected behavior

The extract API bounds matches per issue when a caller passes
`matchesPerIssue` (default 20, max 200), and omitting it preserves the
previous default. The gardening scripts skip PRs that are
deleted/unavailable and tolerate large `gh` responses without aborting
the scan.

### Steps to reproduce

1. Call the company-search extract endpoint with a `matchesPerIssue`
value against an issue containing many PR references — previously the
value was ignored.
2. Run the pr-gardening candidate scan against a company whose issues
reference a since-deleted PR — previously the scan threw instead of
skipping that PR.

### Paperclip version or commit

`master` at the base of this PR (branch cut from current
`origin/master`).

### Deployment mode

Local Paperclip instance / self-hosted.

## What Changed

- **Extract search honors `matchesPerIssue`**: added the
`matchesPerIssue` field to the shared search validator/types and applied
the cap in `company-search-extract` so results are bounded per issue
(`packages/shared`, `server/src/services/company-search-extract.ts`,
`doc/SPEC-implementation.md`).
- **Hardened pr-gardening candidate discovery**: `find-candidates.mjs` /
`lib.mjs` now request `matchesPerIssue=200`, treat missing/unavailable
PRs (deleted PR → `isMissingPullRequestError` / `unavailable`) as skips
instead of fatal errors, and raise the `gh` `maxBuffer` to 50 MB for
large repos.
- **Tests**: expanded `company-search-extract-{routes,service}.test.ts`
for the new limit and added coverage in `pr-gardening.test.mjs`.

## Verification

Re-run on a fresh worktree cherry-picked onto current `master`:

- `node --test
.agents/skills/pr-gardening/scripts/pr-gardening.test.mjs` → 8/8 pass
- `pnpm vitest run
server/src/__tests__/company-search-extract-routes.test.ts
server/src/__tests__/company-search-extract-service.test.ts` → 10/10
pass

## Risks

Low risk. `matchesPerIssue` is optional and backward-compatible
(omitting it preserves prior behavior). The skill changes only add
skip/tolerance paths and a larger buffer; no schema or migration
changes.

## Model Used

Claude — Opus 4.8 (`claude-opus-4-8`), extended thinking, tool use /
code execution via the Claude Agent SDK.

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have searched GitHub for duplicate or related PRs and linked
them above
- [x] I have either (a) linked existing issues with `Fixes: #` / `Closes
#` / `Refs #` OR (b) described the issue in-PR following the relevant
issue template
- [x] I have not referenced internal/instance-local Paperclip issues or
links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip`
URLs)
- [x] My branch name describes the change (e.g. `docs/...`, `fix/...`)
and contains no internal Paperclip ticket id or instance-derived details
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [ ] All Paperclip CI gates are green
- [ ] Greptile is 5/5 with no open P2s, recommendations, or follow-ups
- [x] I will address all Greptile and reviewer comments before
requesting merge

---------

Co-authored-by: Paperclip <noreply@paperclip.ing>
canary/v2026.716.0-canary.4
2026-07-15 21:44:21 -05:00
DottaandPaperclip 5588ddf681 fix(server): prevent recurring worktree port conflicts (#9642)
## Thinking Path

> - Paperclip is the control plane operators use to run AI-agent
companies and their isolated development workspaces.
> - Worktree startup assigns each workspace a server port and an
embedded PostgreSQL port.
> - Existing collision detection depended on discovering sibling configs
from the current repository layout, so worktrees in different repository
roots could select the same ports.
> - Concurrent startup also had no shared critical section, allowing two
worktrees to observe the same available ports before either persisted
its selection.
> - Repeated collisions prevented otherwise isolated workspaces from
starting reliably and could recur after a port was repaired once.
> - This pull request adds a shared, locked registry of active worktree
config paths and uses it during port selection and repair.
> - The benefit is stable, persisted, cross-repository port isolation
for both the Paperclip server and embedded PostgreSQL.

## Linked Issues or Issue Description

### What happened?

When multiple Paperclip worktrees shared the same worktree home but
lived under different repository roots, startup could assign duplicate
server and embedded PostgreSQL ports. The prior sibling scan did not
reliably discover configs outside the current repository, and
simultaneous repairs were not serialized.

### Expected behavior

Each active worktree should reserve unique server and database ports
across repository roots, persist any repaired selection, and reuse the
persisted ports on subsequent starts.

### Steps to reproduce

1. Create two Paperclip worktrees in different repository roots that
share `PAPERCLIP_WORKTREES_DIR`.
2. Give both worktree configs the same server and embedded PostgreSQL
ports.
3. Start or repair both worktrees.
4. Observe that both can retain the same ports because neither reliably
discovers the other configuration.

### Environment

- Version: reproducible on `master` before this change
- Deployment: local development worktrees built from source
- Adapter: not adapter-specific
- Database: embedded PostgreSQL

Related prior reliability work: #1829. Related documentation for
recovering port conflicts: #9407.

## What Changed

- Add a shared `worktree-port-reservations.json` registry under the
worktree home, containing live worktree config paths.
- Serialize registry reads, collision detection, config repair, and
registry updates with a stale-safe filesystem lock.
- Include registered configs and isolated instance configs when
collecting reserved server and embedded PostgreSQL ports.
- Atomically prune stale registry entries and persist repaired ports
plus the matching public base URL.
- Add regression coverage for cross-repository collisions, persisted
repairs, and repeat startup behavior.

## Verification

- `pnpm exec vitest run server/src/__tests__/worktree-config.test.ts` —
14 tests passed, including stale-lock recovery.
- `pnpm --filter @paperclipai/server typecheck` — passed.
- Rebased onto current `public-gh/master` before verification.

## Risks

- Low-to-moderate risk: worktree startup now briefly acquires a
filesystem lock in the shared worktree home.
- The lock has a 10-second acquisition timeout and removes lock
directories older than 5 seconds so interrupted owners are recoverable
within the wait window.
- Registry writes are atomic and stale config paths are pruned, limiting
persistent state to existing worktree configs.
- The change is scoped to worktree runtime configuration and does not
affect normal main-instance configuration.

> For core feature work, check [`ROADMAP.md`](ROADMAP.md) first and
discuss it in `#dev` before opening the PR. Feature PRs that overlap
with planned core work may need to be redirected — check the roadmap
first. See `CONTRIBUTING.md`.

## Model Used

- OpenAI Codex using GPT-5.3 Codex and GPT-5.4 with repository access,
terminal execution, and code-review tooling.

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have searched GitHub for duplicate or related PRs and linked
them above
- [x] I have either (a) linked existing issues with `Fixes: #` / `Closes
#` / `Refs #` OR (b) described the issue in-PR following the relevant
issue template
- [x] I have not referenced internal/instance-local Paperclip issues or
links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip`
URLs)
- [x] My branch name describes the change (e.g. `docs/...`, `fix/...`)
and contains no internal Paperclip ticket id or instance-derived details
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [x] All Paperclip CI gates are green
- [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups
- [x] I will address all Greptile and reviewer comments before
requesting merge

---------

Co-authored-by: Paperclip <noreply@paperclip.ing>
canary/v2026.716.0-canary.3
2026-07-15 20:09:44 -05:00
DottaandPaperclip f1508a7929 feat(decisions): expand image rows into gallery (#9532)
## Thinking Path

> - Paperclip is the open source control plane people use to manage
AI-agent companies and review work that needs human attention.
> - The Decisions page condenses approvals, failed runs, reviews, and
issue interactions into a scannable attention queue.
> - Some decision rows already include screenshot evidence, but the
collapsed thumbnail stack is too small for meaningful inspection.
> - Image-only rows were not expandable because expansion was previously
reserved for inline decision resolvers.
> - Reviewers therefore had to leave the Decisions page before they
could understand the visual evidence attached to a row.
> - This pull request makes rows with images expandable and presents a
readable, linked gallery while preserving the compact collapsed view.
> - The benefit is faster evidence review without sacrificing queue
density or existing inline-resolution behavior.

## Linked Issues or Issue Description

No public GitHub issue currently tracks this feature.

### Subsystem affected

`ui/` — React + Vite board UI

### Problem or motivation

Screenshot evidence in Decisions rows is only visible as small
overlapping thumbnails, and non-inline rows cannot expand to show it.
This makes visual review unnecessarily slow and forces reviewers to
navigate away from the queue.

### Proposed solution

Treat active rows with images as expandable, render the first three
images at a readable size in an expanded gallery, and link images plus
any remaining-image affordance to the related issue.

### Alternatives considered

Always rendering large images would make the queue difficult to scan;
opening the issue immediately preserves density but prevents in-context
review. An explicit expandable gallery keeps both behaviors available.

### Roadmap alignment

`ROADMAP.md` does not list overlapping Decisions image-gallery work.
This is a focused improvement to the existing review surface rather than
a new product area.

### Additional context

The Storybook variants document both the collapsed thumbnail treatment
and deterministic expanded gallery state for reviewer inspection.

## What Changed

- Allow active Decisions rows with screenshot evidence to expand even
when they have no inline resolver.
- Keep compact thumbnails in collapsed rows and render up to three
larger, linked images when expanded.
- Add an accessible remaining-image tile that links to the related issue
when more screenshots exist.
- Add component coverage for image-only expansion and the
remaining-image issue link.
- Add collapsed and expanded image-gallery Storybook variants, including
deterministic initial expansion.

## Verification

- `pnpm exec vitest run ui/src/components/AttentionQueueRow.test.tsx`
- `pnpm check:token-gates`
- `pnpm --dir ui typecheck`
- `pnpm --dir ui build-storybook`
- QA visual verification (light + dark, no defects):
https://github.com/paperclipai/paperclip/pull/9532#issuecomment-4964769485

## Risks

- Low risk: the change is isolated to Decisions row rendering and
Storybook fixtures.
- Rows with images gain a new expansion interaction, but existing inline
resolver behavior and deep links remain intact.
- The gallery intentionally limits the in-row preview to three images to
avoid unbounded row height.

> For core feature work, check [`ROADMAP.md`](ROADMAP.md) first and
discuss it in `#dev` before opening the PR. Feature PRs that overlap
with planned core work may need to be redirected — check the roadmap
first. See `CONTRIBUTING.md`.

## Model Used

- Anthropic Claude Opus 4.8 assisted with the original implementation
and tests.
- OpenAI `gpt-5.4` via Codex CLI assisted with current-master rebase
integration, verification, and PR preparation. The runtime
context-window size is not exposed; capabilities used include reasoning,
repository tool use, code execution, and test execution.

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have searched GitHub for duplicate or related PRs and linked
them above
- [x] I have either (a) linked existing issues with `Fixes: #` / `Closes
#` / `Refs #` OR (b) described the issue in-PR following the relevant
issue template
- [x] I have not referenced internal/instance-local Paperclip issues or
links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip`
URLs)
- [x] My branch name describes the change (e.g. `docs/...`, `fix/...`)
and contains no internal Paperclip ticket id or instance-derived details
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [x] All Paperclip CI gates are green
- [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups
- [x] I will address all Greptile and reviewer comments before
requesting merge

---------

Co-authored-by: Paperclip <noreply@paperclip.ing>
2026-07-15 20:08:21 -05:00
DottaandPaperclip d32ed88443 fix(recovery): route recovery by failure cause (#9634)
## Thinking Path

> - Paperclip is the open source control plane people use to coordinate
AI-agent companies and their work.
> - Its recovery subsystem detects stranded issue execution and decides
whether to retry, escalate, or request operator intervention.
> - The existing recovery path used a mostly generic owner ladder and
generic execution contract, so transient failures could wake a manager
who then performed the deliverable instead of repairing and returning
the task.
> - Provider quota failures also entered the same takeover path even
when the correct action was to wait for capacity and retry the original
assignee.
> - Recovery actions already retain the source owner and evidence needed
to choose a cause-specific route, render a scoped contract, and measure
whether work was handed back.
> - This pull request adds a cause-keyed recovery playbook, propagates
its contract through every built-in adapter, and makes resolved recovery
actions return work to the original owner by default.
> - The benefit is bounded self-recovery that preserves task ownership,
avoids needless management takeover, and makes recovery outcomes
observable.

## Linked Issues or Issue Description

No matching public GitHub issue was found.

Related recovery work was reviewed but is not duplicated here: #9630
restores bounded recovery continuations, #8807 changes one
assignee-ranking case, and #9404 records runtime-failure transition
evidence. This change instead introduces cause-specific routing and
recovery contracts across the recovery lifecycle.

### What happened?

When an issue became stranded, recovery generally selected an owner
through the same fallback ladder and rendered the normal execution
contract. That made the recovery wake look like ordinary deliverable
work, even when the correct action was to retry the original agent,
repair its runtime, or wait for a provider quota reset.

### Expected behavior

Recovery should select a response by failure cause, tell the recipient
to recover rather than complete the deliverable, suppress takeover wakes
for provider quota waits, and return repaired work to its original
assignee unless the recovery owner explicitly completes it.

### Actual behavior

Recovery could escalate transient failures to management, omit the
cause-specific next action from the wake, and leave the recovery owner
assigned after the runtime problem was resolved.

### Impact

The generic path creates avoidable management work, ownership churn, and
budget consumption while obscuring whether recovery successfully
returned work to the responsible agent.

## What Changed

- Added cause-keyed routing for process loss, missing disposition,
provider quota limits, Codex output inactivity, workspace validation
failures, and fallback recovery causes.
- Added recovery-scoped wake rendering that replaces the generic
execution contract with the failure summary, original assignee, attempt
count, next action, and cause-specific playbook instruction.
- Propagated the structured recovery contract through all built-in
adapter execution paths, including Hermes local and gateway adapters.
- Added provider-quota wait monitoring so capacity failures schedule the
original assignee instead of enqueueing a takeover wake.
- Added hand-back behavior and `handed_back` / `owner_completed` outcome
accounting when recovery actions are resolved.
- Added focused routing, renderer, quota-monitor, and hand-back
regression coverage plus implementation-spec documentation.

## Verification

- `pnpm exec vitest run packages/adapter-utils/src/server-utils.test.ts
server/src/__tests__/heartbeat-process-recovery.test.ts
server/src/__tests__/heartbeat-workspace-branch-containment.test.ts
server/src/__tests__/issue-recovery-actions.test.ts`
  - 4 test files passed; 194 tests passed.
- Targeted `pnpm --filter ... typecheck` across
`@paperclipai/adapter-utils`, `@paperclipai/shared`,
`@paperclipai/server`, `@paperclipai/ui`, and all nine changed adapter
packages.
  - 13 affected workspace packages passed typecheck.
- `pnpm check:token-gates`
  - All UI token gates passed.

## Risks

- Recovery routing behavior changes for stranded work, so an incorrectly
classified cause could select a different recipient than before;
fallback causes retain the existing management ladder.
- Provider quota detection depends on structured failure evidence and
conservative text matching; unmatched failures continue through fallback
recovery.
- Adapter prompt plumbing changes across built-ins, covered by shared
renderer tests and compile-time call signatures.

> For core feature work, check [`ROADMAP.md`](ROADMAP.md) first and
discuss it in `#dev` before opening the PR. Feature PRs that overlap
with planned core work may need to be redirected — check the roadmap
first. See `CONTRIBUTING.md`.

## Model Used

- OpenAI Codex with exact model ID `gpt-5.6-sol`, using reasoning, tool
use, and code execution. The runtime does not expose its configured
context-window size.

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have searched GitHub for duplicate or related PRs and linked
them above
- [x] I have either (a) linked existing issues with `Fixes: #` / `Closes
#` / `Refs #` OR (b) described the issue in-PR following the relevant
issue template
- [x] I have not referenced internal/instance-local Paperclip issues or
links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip`
URLs)
- [x] My branch name describes the change (e.g. `docs/...`, `fix/...`)
and contains no internal Paperclip ticket id or instance-derived details
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [x] All Paperclip CI gates are green
- [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups
- [x] I will address all Greptile and reviewer comments before
requesting merge

---------

Co-authored-by: Paperclip <noreply@paperclip.ing>
2026-07-15 20:04:42 -05:00
DottaandPaperclip 16b95eece5 fix(server): preserve source SHA without Git metadata (#9638)
## Thinking Path

> - Paperclip is the open source control plane people use to manage
AI-agent companies
> - Operators need to identify the exact source build running from the
persistent account menu
> - PR #9508 added linked source SHA metadata when the server can
inspect its Git checkout
> - Production images and packaged deployments may not include a `.git`
directory even though their build commit is known
> - Falling back to the package version in those environments makes the
UI look like a formal release and hides the source SHA
> - This pull request reads a validated deployment commit marker when
Git metadata is unavailable and uses it consistently for server version
and server-info responses
> - The benefit is that unreleased deployments keep showing an
inspectable SHA without changing exact-tag release versions

## Linked Issues or Issue Description

Follow-up to #9508.

### Pre-submission checklist

- [x] I searched existing open and closed issues and found no duplicate
for the no-`.git` deployment fallback.
- [x] The behavior reproduces when the server runs without Git metadata
but has a known build commit.
- [x] The behavior originates in Paperclip's core server build metadata
handling, not an adapter, provider, or local configuration.

### What happened?

PR #9508 displays source branch and SHA metadata for unreleased builds,
but server version and server-info resolution still fall back to the
package version when the runtime has no `.git` directory. This is common
in production images and packaged deployments.

### Expected behavior

When a validated deployment commit is available through
`PAPERCLIP_BUILD_COMMIT` or `/app/.paperclip-build-commit`, the server
should retain a derived source version and expose SHA metadata even if
Git commands are unavailable. Exact release tags should continue using
the formal package version.

### Steps to reproduce

1. Build or run Paperclip without a `.git` directory.
2. Provide a full commit SHA through `PAPERCLIP_BUILD_COMMIT` or
`/app/.paperclip-build-commit`.
3. Start the server and inspect the version and server-info output.
4. Observe that current `master` returns only the package version and
reports Git metadata unavailable.

### Paperclip version or commit

Current `master` after #9508.

### Deployment mode

Packaged or containerized deployments without runtime Git metadata.

### Installation method

Built from source or deployment image.

## What Changed

- Add validated build-commit parsing from `PAPERCLIP_BUILD_COMMIT` and
`/app/.paperclip-build-commit`.
- Preserve source-derived server versions when Git commands are
unavailable.
- Expose fallback SHA metadata through server-info with an explicit
unavailable local-status state.
- Keep exact release-tag builds on the formal package version.
- Add focused regression tests for parsing, version resolution, and
server-info fallback behavior.

## Verification

- `pnpm --filter @paperclipai/server exec vitest run
src/__tests__/build-commit.test.ts src/__tests__/server-info.test.ts
src/__tests__/version.test.ts`
- `pnpm --filter @paperclipai/server typecheck`
- `git diff --check public/master...HEAD`

## Risks

- Low risk: only full 40-character hexadecimal commit values are
accepted; malformed or truncated markers preserve the existing fallback
behavior.
- Deployment tooling must set `PAPERCLIP_BUILD_COMMIT` or write
`/app/.paperclip-build-commit` for the fallback to activate.
- Fallback server-info cannot provide branch, subject, commit time, or
working-tree status without Git metadata, so those fields remain
explicitly unavailable.

> For core feature work, check [`ROADMAP.md`](ROADMAP.md) first and
discuss it in `#dev` before opening the PR. Feature PRs that overlap
with planned core work may need to be redirected — check the roadmap
first. See `CONTRIBUTING.md`.

## Model Used

- OpenAI Codex using GPT-5.4 with medium reasoning, repository/tool
access, shell execution, and code editing; context-window size was not
exposed by the runtime.

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have searched GitHub for duplicate or related PRs and linked
them above
- [x] I have either (a) linked existing issues with `Fixes: #` / `Closes
#` / `Refs #` OR (b) described the issue in-PR following the relevant
issue template
- [x] I have not referenced internal/instance-local Paperclip issues or
links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip`
URLs)
- [x] My branch name describes the change (e.g. `docs/...`, `fix/...`)
and contains no internal Paperclip ticket id or instance-derived details
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [x] All Paperclip CI gates pass
- [x] Greptile review is 5/5 with no open P2-or-higher comments,
recommendations, or follow-ups

---------

Co-authored-by: Paperclip <noreply@paperclip.ing>
canary/v2026.716.0-canary.2
2026-07-15 20:03:52 -05:00
b606869a6a feat(skills): add active PR gardening workflow (#9510)
## Thinking Path

> - Paperclip is the open source app people use to manage AI agents for
work
> - Its skills layer gives agents repeatable operational workflows
without embedding every procedure in core orchestration
> - Pull requests referenced across active issue threads currently
require expensive manual discovery and inconsistent readiness checks
> - Candidate extraction and current-head verification can be
deterministic, read-only code paths instead of LLM scanning
> - This pull request adds an active PR gardening skill with discovery,
readiness, reporting, and originating-issue follow-up instructions
> - The benefit is a token-efficient, auditable way to identify PRs that
are ready or need attention while preserving a strict no-merge guardrail

## Linked Issues or Issue Description

- **Problem:** Paperclip operators lack a fleet-level workflow to
discover PRs mentioned by recently active issues, verify their exact
current-head readiness, and route actionable failures back to the issue
that owns the work.
- **Desired behavior:** Use the company extract-search API plus
read-only GitHub inspection to deduplicate open PRs, classify readiness
and confidence, avoid nagging drafts, and render an inspectable report.
- **Safety requirements:** The workflow must never merge, approve, or
close PRs; must never issue mutating GitHub calls; and must suppress
Paperclip comments in dry-run mode.
- No duplicate PR was found. Related historical PR #3725 concerns skill
endpoint permissions rather than PR gardening.

## What Changed

- Added `.agents/skills/pr-gardening/SKILL.md` with discover, verify,
comment, monitor, and report stages plus cooldown and max-round
guidance.
- Added `find-candidates.mjs` to page through extract-search results,
normalize/deduplicate PRs, map source issues and work products, and drop
closed GitHub PRs.
- Added `check-readiness.mjs` to inspect current-head checks, Greptile
freshness, conflicts, reviews, and base distance with machine-readable
reasons.
- Added `render-report.mjs` to group open PRs into High, Medium, and Low
merge-confidence sections.
- Added focused Node tests, including an explicit assertion that scripts
contain no mutating GitHub commands.

## Verification

- `node --test
.agents/skills/pr-gardening/scripts/pr-gardening.test.mjs` — 8 tests
passed.
- Live read-only GitHub dry run at current heads: PR #9493 classified
High/ready; PR #9473 classified Medium because it is two commits behind
`master`; merged PR #9470 is excluded from readiness candidates.
- The deployed control plane currently returns 404 for
`/api/companies/:companyId/search/extract`; direct Stage A live
execution will be repeated after the separately prepared extract-search
endpoint is deployed.

## Risks

- Low runtime risk: this adds a repo skill and read-only scripts, not a
server execution path.
- The discovery script intentionally fails closed when extract-search
reports truncated matches, preventing silently incomplete reports.
- Readiness reflects GitHub state at execution time and must be rerun
after any head update.

> For core feature work, check [`ROADMAP.md`](ROADMAP.md) first and
discuss it in `#dev` before opening the PR. Feature PRs that overlap
with planned core work may need to be redirected — check the roadmap
first. See `CONTRIBUTING.md`.

## Model Used

- OpenAI Codex using GPT-5.4 with medium reasoning, repository tool use,
shell execution, and live GitHub/Paperclip API verification.

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have searched GitHub for duplicate or related PRs and linked
them above
- [x] I have either (a) linked existing issues with `Fixes: #` / `Closes
#` / `Refs #` OR (b) described the issue in-PR following the relevant
issue template
- [x] I have not referenced internal/instance-local Paperclip issues or
links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip`
URLs)
- [x] My branch name describes the change (e.g. `docs/...`, `fix/...`)
and contains no internal Paperclip ticket id or instance-derived details
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [x] All Paperclip CI gates are green
- [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups
- [x] I will address all Greptile and reviewer comments before
requesting merge

---------

Co-authored-by: Paperclip <noreply@paperclip.ing>
Co-authored-by: Claude Fable 5 <noreply@anthropic.com>
canary/v2026.716.0-canary.1
2026-07-15 19:05:44 -05:00
DottaandPaperclip ae77908618 feat(search): add bulk extract endpoint (#9507)
## Thinking Path

> - Paperclip is the open source control plane people use to coordinate
AI-agent companies
> - Agents and operators need company-scoped search to discover relevant
issue history safely
> - The interactive search endpoint intentionally returns compact
excerpts and low pagination caps for UI use
> - Automation that inventories repeated references, such as
pull-request URLs, needs exhaustive distinct matches without loading
full issue objects into an LLM context
> - Client-provided regular expressions would create an unsafe and
expensive query surface, so extraction must remain literal with
server-owned expansion modes
> - This pull request adds a bounded agent-oriented extraction endpoint
with explicit truncation
> - The benefit is deterministic, compact bulk discovery across issues,
comments, and documents while preserving company authorization and rate
limits

## Linked Issues or Issue Description

### Subsystem affected

`server/` REST API and `packages/shared/` contracts.

### Problem or motivation

The existing interactive company search caps issue pagination and
snippets, so automation cannot reliably enumerate every distinct literal
or pull-request URL across issue descriptions, comments, and linked
documents without fetching large full issue payloads.

### Proposed solution

Add `GET /api/companies/:companyId/search/extract` with escaped literal
matching, optional server-owned URL token expansion,
issue/comment/document scopes, status/date filters, higher issue-level
pagination caps, compact source references, and explicit
pagination/match truncation flags.

### Alternatives considered

Reusing `GET /issues?q=` would return unnecessarily large issue objects;
increasing interactive-search snippet limits would make the UI API
heavier; accepting arbitrary client regex would expose avoidable
database cost and ReDoS risk.

### Roadmap alignment

`ROADMAP.md` does not currently list a conflicting company-search or
bulk-extraction initiative. GitHub searches found no directly
duplicative open issue or pull request.

## What Changed

- Added shared query validation and response contracts for literal and
URL extraction.
- Added a company-scoped extraction service that pages issues, gathers
matching issue/comment/document sources, expands URL tokens,
deduplicates values, and reports truncation explicitly.
- Added the authenticated route using the existing company-search
authorization decision and rate limiter.
- Added targeted Vitest coverage for URL extraction, multi-source
dedupe, date/status filters, match caps, cross-company denial, and rate
limiting.
- Documented the extraction surface in the implementation specification.

## Verification

- `pnpm exec vitest run
server/src/__tests__/company-search-extract-service.test.ts
server/src/__tests__/company-search-extract-routes.test.ts
server/src/__tests__/company-search-rate-limit-routes.test.ts
server/src/__tests__/company-search-service.test.ts` — 30 tests passed.
- `pnpm --filter @paperclipai/shared typecheck` — passed.
- `pnpm --filter @paperclipai/server typecheck` — passed.
- `git diff --check` — passed.

## Risks

- Bulk substring search can scan large text columns. The endpoint
mitigates this with a minimum literal length, bounded issue pagination,
a 20-distinct-match cap per issue, explicit truncation, existing
company-search rate limiting, and no client-provided regex.
- URL expansion uses a fixed server-owned pattern plus an escaped
literal. A security review is requested as part of PR review to confirm
the pattern and abuse controls.
- No database migration or existing API response shape changes are
included.

> For core feature work, check [`ROADMAP.md`](ROADMAP.md) first and
discuss it in `#dev` before opening the PR. Feature PRs that overlap
with planned core work may need to be redirected — check the roadmap
first. See `CONTRIBUTING.md`.

## Model Used

- OpenAI Codex CLI coding agent; exact runtime model ID and
context-window size were not exposed to the session. Tool-enabled code
execution and repository editing were used with medium reasoning effort.

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have searched GitHub for duplicate or related PRs and linked
them above
- [x] I have either (a) linked existing issues with `Fixes: #` / `Closes
#` / `Refs #` OR (b) described the issue in-PR following the relevant
issue template
- [x] I have not referenced internal/instance-local Paperclip issues or
links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip`
URLs)
- [x] My branch name describes the change (e.g. `docs/...`, `fix/...`)
and contains no internal Paperclip ticket id or instance-derived details
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [x] All Paperclip CI gates are green
- [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups
- [x] I will address all Greptile and reviewer comments before
requesting merge

---------

Co-authored-by: Paperclip <noreply@paperclip.ing>
canary/v2026.716.0-canary.0
2026-07-15 19:05:06 -05:00
3ae2c30f2f feat(skills): import skills from projects (#9620)
## Thinking Path

> - Paperclip is the open source control plane people use to manage
AI-agent companies.
> - Company skills make reusable agent behavior discoverable and
editable from one place.
> - Projects already contain skill directories, but operators had to
import each skill path manually.
> - Copying those skills would break the desired write-through workflow
between Skill Studio and the source project.
> - The server therefore needs a safe preview/select/import contract
that only accepts rediscovered, workspace-contained candidates.
> - The UI needs a guided project picker that explains reference
semantics, handles conflicts, and remains usable on mobile.
> - This pull request adds that end-to-end project skill import flow
with authorization, tenant-scope, traversal, and symlink regression
coverage.
> - The benefit is faster bulk onboarding while keeping project files as
the single source of truth.

## Linked Issues or Issue Description

**Feature request**

**Problem:** Importing several skills already stored in a Paperclip
project requires operators to discover and submit each local path
individually. This is slow, hides which well-known directories were
searched, and makes conflict/already-imported states difficult to
evaluate before mutation.

**Proposed solution:** Add an “Import skills from project” flow that
previews skills from well-known directories, lets operators selectively
import eligible candidates, and stores local-path references so Skill
Studio edits write through to the project files.

**Alternatives considered:** Copying files into company-managed skill
storage was rejected because it creates divergent copies. Trusting
client-supplied paths was rejected because imports must be constrained
to server-rediscovered, workspace-contained candidates.

**Additional context:** GitHub duplicate search found no existing issue
or PR for this exact workflow. Refs #3799 for related skill-import
inventory behavior; this PR does not claim to close that issue.

## What Changed

- Extend `scan-projects` with backward-compatible preview and
selective-import modes, typed validation, candidate statuses, and
OpenAPI coverage.
- Discover project skills under `skills`, `.agents/skills`,
`.claude/skills`, `.codex/skills`, `.cursor/skills`, `.opencode/skills`,
and `.gemini/skills`.
- Re-discover selections server-side, enforce company/project/workspace
scope, and reject traversal or symlink escapes before creating
`local_path` references.
- Add the Skills-page menu entry and responsive project import dialog
with project selection, grouped candidates, select all/deselect all,
conflicts, empty/error/403 states, and import results.
- Add route, service, and component regressions for preview
authorization, cross-tenant selections, traversal/symlink safety,
selection counts, grouping, and result semantics.

### Screenshots

**Choose a project**

![Choose a
project](https://raw.githubusercontent.com/cryppadotta/paperclip-prs/refs/heads/pr-assets/import-skills-from-project/01-pick-project.png)

**Review discovered skills**

![Review discovered
skills](https://raw.githubusercontent.com/cryppadotta/paperclip-prs/refs/heads/pr-assets/import-skills-from-project/03-select.png)

**Mobile selection footer**

![Mobile selection
footer](https://raw.githubusercontent.com/cryppadotta/paperclip-prs/refs/heads/pr-assets/import-skills-from-project/select-390.png)

**Import result**

![Import
result](https://raw.githubusercontent.com/cryppadotta/paperclip-prs/refs/heads/pr-assets/import-skills-from-project/06-result.png)

## Verification

- `pnpm exec vitest run
server/src/__tests__/company-skills-service.test.ts
server/src/__tests__/company-skills-routes.test.ts
ui/src/pages/skills/ImportSkillsFromProjectDialog.test.tsx` — 3 files,
81 tests passed.
- `pnpm check:token-gates` — all token gates clean.
- `pnpm --filter @paperclipai/shared typecheck` — passed.
- `pnpm --filter @paperclipai/server typecheck` — passed.
- `pnpm --filter @paperclipai/ui typecheck` — passed.
- Security review passed after adding tenant-scope and
unauthorized-preview regressions; UX re-review approved desktop/mobile
surfaces; QA passed all seven acceptance areas including write-through
editing, deduplication, conflicts, empty state, and permission denial.

## Risks

- Files remain referenced in project workspaces, so moving or deleting a
source directory can make an imported skill unavailable; the UI
explicitly communicates the reference behavior.
- New well-known directory scans may discover more candidates than older
versions, but preview mode prevents mutation until the operator confirms
a selection.
- The endpoint remains backward compatible: omitting `mode` preserves
the prior full-import behavior.
- No schema migration or telemetry event changes.

> For core feature work, check [`ROADMAP.md`](ROADMAP.md) first and
discuss it in `#dev` before opening the PR. Feature PRs that overlap
with planned core work may need to be redirected — check the roadmap
first. See `CONTRIBUTING.md`.

## Model Used

- Anthropic Claude Opus 4.8 with tool use/code execution assisted with
the UI implementation and UX polish. OpenAI Codex CLI with tool use/code
execution assisted with server implementation, security fixes,
regression coverage, integration, and PR preparation; the runtime did
not expose Codex's exact backing model ID or context-window size.

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have searched GitHub for duplicate or related PRs and linked
them above
- [x] I have either (a) linked existing issues with `Fixes: #` / `Closes
#` / `Refs #` OR (b) described the issue in-PR following the relevant
issue template
- [x] I have not referenced internal/instance-local Paperclip issues or
links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip`
URLs)
- [x] My branch name describes the change (e.g. `docs/...`, `fix/...`)
and contains no internal Paperclip ticket id or instance-derived details
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [x] All Paperclip CI gates are green
- [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups
- [x] I will address all Greptile and reviewer comments before
requesting merge

---------

Co-authored-by: Paperclip <noreply@paperclip.ing>
Co-authored-by: Claude Opus 4.8 <noreply@anthropic.com>
canary/v2026.715.0-canary.6
2026-07-15 18:01:44 -05:00
DottaandPaperclip 9af96461d5 fix(server): restore stranded recovery continuations (#9630)
## Thinking Path

> - Paperclip is the open source control plane people use to coordinate
AI agents and their work.
> - Its server recovery layer classifies blocked issue graphs and
restores interrupted heartbeat execution.
> - A dependent issue could remain dispatch-suppressed by a cancelled
blocker without producing operator-visible attention when the dependent
still displayed as todo or backlog.
> - Separately, a monitor-triggered run that lost its process before
disposition could consume the monitor's one-shot wake without scheduling
the existing bounded continuation.
> - Both gaps strand useful work even though Paperclip already has the
relevant blocker-attention and process-loss recovery mechanisms.
> - This pull request widens the existing classification path and reuses
the single process-loss retry for monitor dispatches with no future
wake.
> - The benefit is visible, routable recovery without weakening
dependency checkout rules or introducing an unbounded retry loop.

## Linked Issues or Issue Description

No matching public GitHub issue or pull request was found.

### What happened?

Two server recovery cases could leave work stranded:

1. A non-terminal, agent-assigned issue with an unresolved cancelled
blocker remained ineligible for checkout, but blocked-chain liveness
classification only inspected issues already displaying `blocked` or
`in_review`, so the existing `blocked_by_cancelled_issue` attention was
not surfaced.
2. A one-shot issue monitor cleared its next check when dispatched. If
that monitor-triggered run ended as `process_lost` without a tracked
local child, the existing bounded retry gate rejected it and no future
monitor wake remained.

### Expected behavior

- Cancelled blockers continue to be unresolved dependencies, and their
dependents receive blocker attention regardless of whether the dependent
currently displays as backlog, todo, blocked, or in review.
- A monitor-triggered run lost before disposition receives exactly one
bounded continuation when no future monitor check exists; a second loss
follows the normal recovery-action escalation path.

### Steps to reproduce

1. Create an agent-assigned todo issue blocked by a cancelled issue and
run issue-graph liveness classification.
2. Observe that no cancelled-blocker finding appears before this change.
3. Dispatch a due issue monitor, clear its one-shot
`monitorNextCheckAt`, and mark the resulting untracked run
`process_lost`.
4. Observe that no retry is queued before this change.

### Environment

- Paperclip commit: `3e348b96b`
- Deployment: built from source / local test environment
- Adapter: not adapter-specific; core server recovery
- Database: embedded test database

## What Changed

- Inspect non-terminal, agent-assigned issues with unresolved blocker
edges during blocked-chain liveness classification.
- Include cancelled dependents in the existing blocked-inbox attention
query while preserving company-scoped relation checks.
- Allow monitor-triggered `process_lost` runs with no future monitor
wake to use the existing single bounded retry.
- Mark monitor recovery retries as continuation-needed context and
retain the existing second-loss escalation behavior.
- Document cancelled-blocker and monitor-dispatch recovery semantics.
- Add focused regressions for liveness findings, attention propagation,
one retry, and second-loss escalation.

## Verification

- `pnpm exec vitest run
server/src/__tests__/heartbeat-process-recovery.test.ts
server/src/__tests__/issue-blocker-attention.test.ts
server/src/__tests__/issue-liveness.test.ts` — 3 files, 126 tests
passed.
- `pnpm --filter @paperclipai/server typecheck` — passed.

## Risks

- Low risk and server-only. The liveness scan inspects more unresolved
dependency shapes, which can produce additional existing attention
entries for previously invisible cancelled blockers.
- Monitor recovery remains bounded by `processLossRetryCount < 1`, and
the extra path only applies when the dispatch was monitor-triggered and
no future monitor check exists.
- No schema, migration, authorization, API-contract, or UI changes.

> For core feature work, check [`ROADMAP.md`](ROADMAP.md) first and
discuss it in `#dev` before opening the PR. Feature PRs that overlap
with planned core work may need to be redirected — check the roadmap
first. See `CONTRIBUTING.md`.

## Model Used

- OpenAI `gpt-5.4` through Codex CLI, with reasoning, repository tool
use, command execution, and test execution capabilities.

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have searched GitHub for duplicate or related PRs and linked
them above
- [x] I have either (a) linked existing issues with `Fixes: #` / `Closes
#` / `Refs #` OR (b) described the issue in-PR following the relevant
issue template
- [x] I have not referenced internal/instance-local Paperclip issues or
links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip`
URLs)
- [x] My branch name describes the change (e.g. `docs/...`, `fix/...`)
and contains no internal Paperclip ticket id or instance-derived details
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [x] All Paperclip CI gates are green
- [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups
- [x] I will address all Greptile and reviewer comments before
requesting merge

---------

Co-authored-by: Paperclip <noreply@paperclip.ing>
canary/v2026.715.0-canary.5
2026-07-15 16:41:39 -05:00