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DottaandClaude Opus 5.5	65f41593d1	fix(runner): tell agents a skill found in a directory is imported, not re-created (#19983 ) ## Thinking Path > - Paperclip is the open source app people use to manage AI agents for work > - Agents can add skills to the company library in two ways: author new content with `create_skill`, or import an existing skill so its source is kept > - #18717 told agents in the `create_skill` contract to import "an existing skill" instead of copying it > - An agent read "existing" as "already in the company library" > - It searched the library, found no match, and saved a managed copy of a SKILL.md from a vetted local directory > - The copy has no source locator, so update, audit and reset flows cannot follow the source > - This pull request says in the same contract that a SKILL.md in a local directory, repository, URL or catalog is an existing skill even when the library has no match > - The benefit is that agents import such skills and keep their provenance ## Linked Issues or Issue Description Refs #18717 What happened A person asked the CEO agent: "Find a useful accessibility-review skill and add it to our company." The conversation pointed to a vetted local directory with a SKILL.md. The agent called `search_skills`, found no match, and wrote in its reasoning "No existing accessibility skill. Now create it via paperclip_create_skill". It saved a `managed` skill with `sourceLocator: null`. It did not call the import API that the `create_skill` description recommends. Expected behavior The agent imports the skill from its directory through `POST /api/companies/{companyId}/skills/import`. The saved skill is `local_path` with the directory as its source locator. Steps to reproduce 1. Put a SKILL.md in a directory that a company project workspace allows. 2. Give the directory path to the agent in chat, and ask it to add the skill to the company. 3. Look at the saved skill. Before this change, the agent can save a `managed` copy without a source locator. ## What Changed - Add one sentence to the `create_skill` description in `packages/paperclip-runner/src/protocol-actions/create-skill.ts`: a SKILL.md in a local directory, repository, URL or catalog is an existing skill, even when the company library has no match, so import it instead of copying its content. - Regenerate the semantic action catalog, the semantic tool contracts, the protocol manifest digest and the seeded catalog digest. - Extend the existing contract test so that the discovered, live and scenario descriptions all contain the new rule. ## Verification - `pnpm exec vitest run src/semantic-tools/paperclip-semantic-tools.test.ts -t "distinguishes authored skills"` in `packages/paperclip-runner` passes. The new assertion fails on the parent, because the parent description does not contain the sentence. - `node scripts/generate-semantic-action-catalog.mjs --check`, `node scripts/generate-protocol-manifest.mjs --check` and `node scripts/generate-semantic-contracts.mjs --check` pass. - End-to-end chat eval `skills.find-and-install` (runner-opencode, local), with this commit cherry-picked onto the eval branch: before, run 42448994428 failed because the agent saved a managed copy. After, run 42450246200 passed. The agent quoted the new sentence in its reasoning, imported the directory through the import API, and the saved skill is `local_path` with the vetted directory as its source locator. ## Risks - Low risk. The change is model-facing text only. It does not change permissions, routes or tool inputs. - Agents that author truly new skills still use `create_skill`. The sentence applies only when a SKILL.md already exists somewhere. ## Model Used - Anthropic Claude Opus 5.5 (`claude-opus-5-5`), with tool use and code execution in Claude Code. ## Checklist - [x] I have included a thinking path that traces from project context to this change - [x] I have specified the model used (with version and capability details) - [x] I have checked ROADMAP.md and confirmed this PR does not duplicate planned core work - [x] I have searched GitHub for duplicate or related PRs and linked them above - [x] I have either (a) linked existing issues with `Fixes: #` / `Closes #` / `Refs #` OR (b) described the issue in-PR following the relevant issue template - [x] I have not referenced internal/instance-local Paperclip issues or links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip` URLs) - [x] My branch name describes the change (e.g. `docs/...`, `fix/...`) and contains no internal Paperclip ticket id or instance-derived details - [x] I have run tests locally and they pass - [x] I have added or updated tests where applicable - [x] I have updated relevant documentation to reflect my changes - [x] I have considered and documented any risks above - [ ] All Paperclip CI gates are green - [ ] Greptile is 5/5 with no open P2s, recommendations, or follow-ups - [x] I will address all Greptile and reviewer comments before requesting merge 🤖 Generated with [Claude Code](https://claude.com/claude-code) Co-authored-by: Claude Opus 5.5 <noreply@anthropic.com>	2026-11-07 23:47:30 -06:00
DottaandClaude Opus 5.5	051834bdc8	feat(chaos): add the on-demand crash-point suite and its manual CI workflow (#19946 ) ## Thinking Path > - Paperclip is the open source app people use to manage AI agents for work > - A control-plane restart between two durable writes leaves an in-progress record owned by a dead process > - Random restart-chaos waves found these 20 ms–1 s windows only by luck > - #19937 added `crashPoint(name)`, and #19938 put it at 20 durable write boundaries > - Nothing yet runs a task, kills the server at a chosen point, restarts it, and checks the plan's invariants > - This pull request adds that on-demand suite, as a local command and as a manual CI workflow (not a required check, per Decision 2) > - The benefit is a repeatable work list: which boundary breaks which invariant, for Phases 2–4 ## Linked Issues or Issue Description Refs #19831 (plan, Phase 5 and Decision 2). Refs #19861 (report-only reconciler used for I1–I7). Stacked on #19938 (call sites), which is stacked on #19937 (helper). Problem The named crash points cannot be exercised end to end. No command arms one point, runs real agent tasks across it, restarts, and grades the result. Expected behavior `node scripts/crash-points.mjs --points <glob> --kinds <id> --adapters <list>` runs one wave per selected point and reports each point as pass, fail (with failing R rules and violated invariants), not reached, or harness error. A `workflow_dispatch` workflow runs the same thing on demand. ## What Changed - Runtime arming. `PAPERCLIP_CRASH_POINT_CONTROL=<file>`, in the shared helper and the runner mirror. Each hit reads `<token> <name>[:<nth>]`, and a new token resets the count. It is test mode only: `NODE_ENV=production` ignores it, and the disarmed path is still one comparison. - `tests/restart-chaos/main.ts --crash-point <a>:<nth>,<b>:<nth>,...` (config, types, ledger): - one booted server and no Vite UI; - per point: take an invariant baseline, launch the point's batch, arm the point, then on rest disarm it and check invariants as violations that are new since the baseline; - every task is graded R1–R6 and T; - `crash-point.json` (v2) holds one entry per point. - `tests/restart-chaos/supervisor.ts`: - every spawn gets the control file; - a SIGKILL whose receipt names the child's pid is restarted like K1: the control file is emptied first, the owned tree is killed, and a replacement starts. A failed tree cleanup fails the fault; - the isolated instance pins `PAPERCLIP_IN_WORKTREE=false` (a `.paperclip/.env` above the checkout otherwise suppressed all scheduling); - `RESTART_CHAOS_HEALTH_TIMEOUT_MS`. - `tests/restart-chaos/invariants.ts`: - the Phase 1 report-only pass with `record: false`: two real-clock passes for I1 and I2, and one pass 15 minutes ahead for I3, I4 and I7; - spool kinds are read from the wave's instance; - an unfinished pass is a harness error; - each violation carries its wake and run state as evidence. - `tests/restart-chaos/crash-points.ts` and `scripts/crash-points.mjs`: - select points by glob, kind and environment, and run them in one wave; - a per-point outcome: pass, fail, not_reached or harness_error; - `SUMMARY.md` with a violation evidence column. - `.github/workflows/crash-points.yml`, manual only, under the paid-workflow contract: - a credential-free `authorize` job; - a `suite` job in `runner-e2e-paid` whose first step reauthorizes; - a frozen install with `--ignore-scripts` and no shared cache; - only the selected adapters' keys; - the workflow is added to both security-test allowlists. - Docs: "Crash-point suite" in `tests/restart-chaos/README.md`, and "Built (Phase 5)" plus the first work list in the plan. ## Verification - Focused tests: - `pnpm exec vitest run --config tests/restart-chaos/vitest.config.ts tests/restart-chaos/crash-points.test.ts`; - `cd packages/shared && npx vitest run src/crash-points.test.ts`: 15 tests, including runtime arming in a real child process; - `node --test scripts/__tests__/release-verify-workflow.test.mjs`: 72 tests; - `tests/runner-e2e/workflow-security.test.ts`: 19 tests. - Typecheck: `node scripts/typecheck-test-projects.mjs tests/restart-chaos` passes. - Loop line: question "how long is one crash-point loop?" \| loop: `node scripts/crash-points.mjs --points <one>` (codex A1) \| elapsed 2.7 min end to end: boot 9 s, crash 9 s after arming, replacement ready in 6 s, rest about 2 min \| result: one point alone takes about 3 min. Before this change it took about 15 min (one cold boot per point, Vite UI, host at load 77). - Full local run, 14 points, codex A1, 11.8 min in all: - every point was reached (the server killed itself at each one, and the replacement came back); - 11 pass; - `workspace.finalize.after_start_before_copyback` and `workspace.finalize.after_copyback_before_done` fail I2 and R6: a `workspace_finalize` operation stays running after the run succeeded; - `wake.claim.after_run_running_before_wakeup_claimed` reports I4. Its evidence shows the wake failed with "…retrying once", and the retry delivered the work, so this is the known refusal-regex false positive. - The 6 Daytona-only points were not run. ## Risks - Test harness and an on-demand workflow only. No product code changes. - `.github/**` needs a CODEOWNER review. The workflow uses provider keys, so it refuses non-default branches and actors that are not on the allowlist, like `runner-full-stack-e2e.yml`. - `PAPERCLIP_IN_WORKTREE=false` is pinned in every chaos wave, not only crash-point waves. A chaos instance is never a worktree dev instance, so scheduling must not be suppressed. ## Model Used - Claude Opus 5.5 (`claude-opus-5-5`), Anthropic, via Claude Code with tool use (shell, file edits). ## Checklist - [x] I have included a thinking path that traces from project context to this change - [x] I have specified the model used (with version and capability details) - [x] I have checked ROADMAP.md and confirmed this PR does not duplicate planned core work - [x] I have searched GitHub for duplicate or related PRs and linked them above - [x] I have either (a) linked existing issues with `Fixes: #` / `Closes #` / `Refs #` OR (b) described the issue in-PR following the relevant issue template - [x] I have not referenced internal/instance-local Paperclip issues or links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip` URLs) - [x] My branch name describes the change (e.g. `docs/...`, `fix/...`) and contains no internal Paperclip ticket id or instance-derived details - [x] I have run tests locally and they pass - [x] I have added or updated tests where applicable - [x] I have updated relevant documentation to reflect my changes - [x] I have considered and documented any risks above - [ ] All Paperclip CI gates are green - [ ] Greptile is 5/5 with no open P2s, recommendations, or follow-ups - [x] I will address all Greptile and reviewer comments before requesting merge 🤖 Generated with [Claude Code](https://claude.com/claude-code) --------- Co-authored-by: Claude Opus 5.5 <noreply@anthropic.com>	2026-11-07 23:41:15 -06:00
DottaandClaude Opus 5.5	576ba29fff	feat(recovery): settle the legacy controller lease on the shared ownership path (#19953 ) ## Thinking Path > - Paperclip is the open source app people use to manage AI agents for work > - Legacy (non-native) runs hold a controller lease on `heartbeat_runs` while the server prepares and dispatches the adapter. The shared ownership reconciler now settles proven-gone owners (Phase 2 of the durable ownership plan) > - The lease stamped only a boot id. The reconciler could never prove its owner gone (`missing_identity` in the Phase 2 data), and recovery released it by age: lease expiry (60 s), then a 5-minute age guard on dispatched runs > - A hard-killed server's legacy run therefore stayed `running` for up to 6 minutes after the next boot > - This pull request records the controller process with the claim, registers a compare-and-swap settle, and makes live-run recovery use the shared prover instead of the age guard when the controller is proven gone > - The benefit is that a dead controller's run is settled at once, while a live, unprovable, or previous-release controller keeps today's behavior ## Linked Issues or Issue Description Refs #19933 (the settle hook, merged). Stacked on #19950 (migration 0446, registry) and targets its branch until it merges; then it retargets to master. What happened? After a hard kill, a dispatched legacy run stayed `running` until its controller lease expired and its last update was 5 minutes old. What did you expect? The next boot proves the old controller gone and fails the run as a lost process at once. Steps to reproduce 1. Start a legacy (non-native) run and let it dispatch the adapter. 2. Kill the server (SIGKILL). 3. Start the server. The run stays `running` for up to 6 minutes. ## What Changed - `heartbeat_runs.controller_process` (jsonb, migration 0447): `{bootId, pid, hostHash, processStartedAt}` of the claiming server process. It names the controller only while its `bootId` equals `controller_boot_id`. Revocation swaps the boot id, so a revoked lease never keeps it. - `legacyControllerClaim` writes it in the same UPDATE (from `currentControllerProcessStamp()`, no I/O). - `legacy-controller-lease.ts`: `legacyControllerOwnerStamp`, `legacyControllerProvenGone` (calls `proveOwnerGone`), and `settleLegacyControllerLease` (compare-and-swap expiry of the proven controller's outstanding lease after it wakes live-run recovery). - `ownership-registry.ts`: `legacy_controller_lease` registers `settle` and `listForRuns`. The owner is the bound process; other rows are boot-id fences. The listing covers outstanding leases only. - `heartbeat/recovery.ts` (3 small hunks): a controller of another boot that the shared prover proves gone has its live lease settled through `settleOwnableKind` and skips the age guard. The local child-process check after it is unchanged, so a live child still keeps the run running. - Migration 0447 builds the partial index with `CREATE INDEX CONCURRENTLY` (heartbeat_runs is a known-large table) and is added to `MIGRATIONS_WITH_TOP_LEVEL_STATEMENTS`. Bespoke code deleted: none. The kind had no liveness proof; the age guard stays for controllers that are not proven gone. ## Verification - `cd server && npx vitest run src/services/legacy-controller-lease.test.ts`: 33 passed. - `cd server && npx vitest run src/__tests__/ownership-reconciliation-report.test.ts`: 17 passed. - Red with `recovery.ts` and `ownership-registry.ts` from the base commit (tests, schema and lease module from this branch): 4 failed, 29 passed. Red: the crash-point reaper test, the expired-lease age-guard test, the reconciler settle test, the exact-controller CAS test. The tests were written after the code. - New tests: - the claim stamps this process, and a changed boot id unbinds it; - crash point: a controller dispatched the adapter and was killed with its lease live; the startup reaper (default 5-minute age guard) fails the run as `process_lost` at once; - a dead controller's expired lease skips the age guard; - counter-cases keep the run and lease through the reaper and a reconciler pass: a live earlier-boot PID, a dead PID in another PID space, and a previous-release row with no `controller_process`; an expired lease of a live controller stays behind the age guard; - a read-only pass (`record: false`) never settles; a recording pass expires the lease and leaves the run to live-run recovery; - settle refuses a controller that changed after the proof. - Not run locally: typecheck (CI runs it) and the wide suites. ## Risks - Previous-release story (rules/upgrade-safe-run-state.mdc): rows saved by the previous release have no `controller_process`. They stay boot-id fences with today's release (expiry, revocation, age guard). A rollback ignores the column. - Unprovable controllers (another host or PID space, unknown space, a live PID with an unreadable start time) never release early. Their handoff stays the lease expiry plus revocation, and the age guard. A different host is never proof. - Behavior change: a dispatched run whose controller is proven gone is failed as `process_lost` without the 5-minute wait. The retry decision is unchanged. - The settle expires the lease only. Live-run recovery still settles the run under its own checks. Accounting and workspace obligations are not touched. - The index build is concurrent. A cancelled build is retried by the migrator's invalid-index handling. ## Model Used - Claude Opus 5.5 (`claude-opus-5-5`), Anthropic, via Claude Code with tool use (shell, file edits, local test runs). ## Checklist - [x] I have included a thinking path that traces from project context to this change - [x] I have specified the model used (with version and capability details) - [x] I have checked ROADMAP.md and confirmed this PR does not duplicate planned core work - [x] I have searched GitHub for duplicate or related PRs and linked them above - [x] I have either (a) linked existing issues with `Fixes: #` / `Closes #` / `Refs #` OR (b) described the issue in-PR following the relevant issue template - [x] I have not referenced internal/instance-local Paperclip issues or links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip` URLs) - [x] My branch name describes the change (e.g. `docs/...`, `fix/...`) and contains no internal Paperclip ticket id or instance-derived details - [x] I have run tests locally and they pass - [x] I have added or updated tests where applicable - [x] I have updated relevant documentation to reflect my changes - [x] I have considered and documented any risks above - [ ] All Paperclip CI gates are green - [ ] Greptile is 5/5 with no open P2s, recommendations, or follow-ups - [x] I will address all Greptile and reviewer comments before requesting merge 🤖 Generated with [Claude Code](https://claude.com/claude-code) --------- Co-authored-by: Claude Opus 5.5 <noreply@anthropic.com>	2026-11-07 23:27:54 -06:00
DottaandClaude Opus 5.5	c0c26188db	fix(runner): stamp event generations and record an earlier generation's events as history (#19960 ) ## Thinking Path > - Paperclip is the open source app people use to manage AI agents for work > - Native runs execute through the Paperclip Runner, which turns provider output (Codex, OpenCode, Claude through ACPX) into durable runner events > - In the restart chaos campaign, events from an earlier turn or runner generation failed the current turn about ten times (RC-15, 20, 20b, 20c, 33, 33b, 59 and 61) > - #19718, #19722, #19772 and #19783 each special-cased one variant, and other variants still fail the run > - The durable-ownership plan (section G, invariant 6) asks for one rule: every event carries its generation and turn, and an earlier generation's events are recorded as history and never fail the current turn > - This pull request stamps the runner generation on every event and applies one stale-event rule in the ACPX provider state, the Codex driver (which Runnerd also uses for OpenCode) and the pending `turn.start` check > - The benefit is that a late report about a settled or restored turn no longer stops a healthy turn, while events for a turn the runner never saw still fail closed ## Linked Issues or Issue Description Refs #19718, #19722, #19772, #19783 What happened? A runner or provider can report a turn after that turn settled: a resumed provider reports the lost turn's usage or terminal, an ACPX sidecar emits a last delta after the turn terminal, or a held failure of the previous turn sits in front of a new `turn.start`. Several of these paths fail the current turn: ACPX `AcpxEventScope` rejects any event for a non-active turn ("named a stale turn"), the Codex driver fails `turn_binding_mismatch` for a settled turn's late item between turns, and `runnerdPendingTurnStartFailure` reports any held non-recoverable failure, whatever turn it names. Runner events carried no generation. Expected behavior An event for a turn that is not active, and that an earlier generation accepted or this generation already settled, is recorded as history and never fails the current turn. An event for a turn the runner never saw still fails closed. Steps to reproduce ACPX: settle turn 1, start turn 2, and deliver a late `runtime.event` for turn 1. Before this change, the provider state returns an error and the run fails. ## What Changed - Runner (`durable/state.rs`, `durable/runner.rs`): every event payload carries `generation`, the runner process generation that emitted it. A runner process that recovers state starts the next generation (`begin_recovered_generation`); it is saved with the next normal write, so recovery adds no write before the first turn. Loading stays pure. Old saved state loads as generation 0. Outbox events keep their original generation. - PRP event schemas v1–v3 declare the optional `generation` property; generated validators and the manifest are regenerated. - ACPX (`acpx_event_scope.rs`, `acpx_provider_state.rs`): an event that names a settled turn of this run becomes a bounded `stale_generation_event` diagnostic (32 per state) and changes no state. Unknown turns still fail. - Codex driver (`codex-session-state.ts`, `codex-session-notifications.ts`): one predicate, `isHistoryTurn()`: the turn is not active, and it was restored from the checkpoint (an earlier generation) or settled in this generation. The classifier's stale-turn branch, the resume-usage branch, restored-terminal replay and the main fail point (`notificationNamesActiveTurn`) all use it. A terminal for an earlier generation's turn is history even when it disagrees with the checkpoint. A terminal that contradicts a turn this same generation settled is still a `conflicting_turn_terminal` integrity failure, and a provider that starts a settled turn again is still rejected. - Transport (`runnerd-codex-transport.ts`): a pending `turn.start` ignores a held failure that names another provider turn. - `DURABLE_TRANSPORT.md` documents the stamp and the rule. ## Verification - `cargo test -p paperclip-runner-core`: new `records_late_events_for_a_settled_turn_as_history` (red before), `stamps_every_event_with_the_runner_process_generation`; two existing ACPX tests now assert "recorded as history, no state change" instead of "rejected". Durable tests: 112 passed. `cargo fmt` clean. - `codex-app-server-driver.stale-generation.test.ts` (new, 9 tests): late item, delta, terminal and workspace change for a settled turn during and before the next turn, an earlier generation's conflicting terminal after recovery, and an unknown turn that still fails. Red on master: 8 of 9 (the during-turn cases on master already dropped the event, with a different diagnostic; the between-turn and recovery cases failed the session). - `runnerd-pending-turn-start-failure.test.ts` (new): an earlier turn's held failure no longer fails the pending start; the pending turn's own failure and a failed run terminal still do. - `vitest run src/drivers/codex src/live/runnerd-codex-transport`: 787 passed; 2 Codex executable-resolution tests timed out under host load and pass when run alone. - `tsc -p tsconfig.json` for the runner package, `check:protocol-types`, `check:replay-goldens`: clean. - Not run: chaos waves (the coordinator schedules them on this host). ## Risks - A late report about a settled turn is now dropped with a diagnostic instead of failing. A provider that keeps working on a settled turn could have its output ignored silently; a provider that starts a settled turn again, or names a turn the runner never saw, still fails closed. - `generation` is a new optional field. Consumers that do not know it ignore it, as the PRP contract requires. - The generation counter is written with the next normal state save, so there is no new write before `turn.start`. > For core feature work, check [`ROADMAP.md`](ROADMAP.md) first and discuss it in `#dev` before opening the PR. Feature PRs that overlap with planned core work may need to be redirected — check the roadmap first. See `CONTRIBUTING.md`. ## Model Used - Claude Opus 5.5 (`claude-opus-5-5`), Anthropic, via Claude Code with tool use (shell, file edits, test execution). Extended reasoning enabled. ## Checklist - [x] I have included a thinking path that traces from project context to this change - [x] I have specified the model used (with version and capability details) - [x] I have checked ROADMAP.md and confirmed this PR does not duplicate planned core work - [x] I have searched GitHub for duplicate or related PRs and linked them above - [x] I have either (a) linked existing issues with `Fixes: #` / `Closes #` / `Refs #` OR (b) described the issue in-PR following the relevant issue template - [x] I have not referenced internal/instance-local Paperclip issues or links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip` URLs) - [x] My branch name describes the change (e.g. `docs/...`, `fix/...`) and contains no internal Paperclip ticket id or instance-derived details - [x] I have run tests locally and they pass - [x] I have added or updated tests where applicable - [x] I have updated relevant documentation to reflect my changes - [x] I have considered and documented any risks above - [ ] All Paperclip CI gates are green - [ ] Greptile is 5/5 with no open P2s, recommendations, or follow-ups - [x] I will address all Greptile and reviewer comments before requesting merge 🤖 Generated with [Claude Code](https://claude.com/claude-code) --------- Co-authored-by: Claude Opus 5.5 <noreply@anthropic.com>	2026-11-07 23:16:00 -06:00
DottaandClaude Opus 5.5	fda58d8cc1	fix(chat): post the complete final reply, not a 4,000-character run-log preview (#19971 ) ## Thinking Path > - Paperclip is the open source app people use to manage AI agents for work. > - People talk to agents in chat. The agent's final message becomes the chat reply. > - The runner cuts every completed agent message to a 4,000-character run-log preview. The server then posts that preview as the reply. > - A long answer, for example a list of 501 open tasks, reaches the person cut off with "…[truncated]". > - PR #19959 fixed only the case where the accepted summary starts with the exact preview text. It missed runs where the final prose differs from the summary. > - This pull request keeps the complete final answer in the runner, and makes the server never prefer a preview over a complete source. > - The benefit is that the person receives the agent's complete reply. ## Linked Issues or Issue Description Supersedes #19959. What happened A chat agent wrote a final answer of about 4,985 characters (all 501 tasks). The posted chat reply was a 4,000-character preview that ended with "…[truncated]". Expected behavior The person receives the agent's complete final message. A preview of a message is never posted when a complete text exists. Steps to reproduce 1. Ask a chat agent (OpenCode or Codex) to list a large set of open work, so that its final answer is longer than 4,000 characters. 2. Let the run finish. 3. Read the chat reply. It ends with "…[truncated]" at 4,000 characters. Root cause: - `packages/paperclip-runner/runner/crates/runner-core/src/provider_events.rs`: the codex/OpenCode facade projection of `item/completed` and the ACPX `AssistantMessage` projection cut the final answer with `bounded_text(text, MAX_TEXT_CHARS)` (4,000 characters). - `durable/state.rs` `sanitize_value` caps every string again at 4,096 bytes before the event goes to the server. - `server/src/services/heartbeat-run-summary.ts` `resolveHeartbeatRunResponse` gives an explicit `final` agent message top precedence, so it posts the preview. ## What Changed - Runner (`provider_events.rs`): a completed `final_answer` agent message keeps its complete redacted text, up to a new 32,000-character `MAX_FINAL_AGENT_MESSAGE_CHARS` bound. Progress prose and in-flight items keep the 4,000-character preview. - Runner (`durable/state.rs`): `preserve_final_agent_message_text` keeps the complete redacted text of a completed final agent message when it fits in half of the transport frame. Otherwise the marked preview stays, so a large message never fails the frame check. - Server (`heartbeat-run-summary.ts`): `readCompletedAssistantMessageCandidate` marks a stored preview as `bounded`. The resolver never posts a bounded preview while a complete source exists. It posts a marked adapter final response or the accepted semantic summary instead (`bounded_final_agent_message_replaced_by_semantic_summary`). It posts the marked preview only when no complete text exists (`bounded_final_agent_message_without_complete_source`). This also fixes replies from runners that are already deployed. ## Verification - `cd server && npx vitest run src/__tests__/heartbeat-run-summary.test.ts`: 86 passed. Six new tests: a complete final message longer than 4,000 characters is posted in full; the old exact-prefix case posts the complete accepted answer; a preview whose prose differs from the summary posts the complete summary (also with chat precedence); a marked adapter final response wins over a preview; the marked preview is posted only when nothing complete exists; a stored preview candidate is marked `bounded`. Five of the six fail against the `master` resolver. - `cargo test -p paperclip-runner-core --lib -- final_answer complete_final`: 3 passed. Both new runner tests fail when the fix is reverted. - `cargo test -p paperclip-runner-core --lib`: 581 passed, 3 failed. The failures are `task_memory::tests::monitor_*` (OOM-kill monitor timing tests). They do not touch the changed code. - `cargo test -p paperclip-runner-core --test acpx_event_projection --test acpx_rich_events --test local_integrity_boundary_golden --test acpx_provider_events`: all passed. `cargo fmt --check` passes. - Evidence from the failed eval run: the `item.completed` final `agentMessage` text was exactly 4,000 characters (3,988 retained plus the marker). The `run.result.proposed` summary was complete at 4,985 characters. ## Risks - Larger durable events: a final answer can now be up to 32,000 characters (at most about 128 KB). The outbox keeps the preview when the text exceeds half of the frame size, so the frame check does not fail. - Redaction stays the same. The complete text goes through `redact_sensitive_text_values`, which the preview also used. - The server treats any final message that ends with "…[truncated]" as a preview. If an agent writes that text itself, the server posts the complete accepted summary instead. That summary is also the agent's own complete answer. - The runner part reaches users only after a runner release. The server part fixes replies at once when an accepted summary exists. > For core feature work, check [`ROADMAP.md`](ROADMAP.md) first and discuss it in `#dev` before opening the PR. Feature PRs that overlap with planned core work may need to be redirected — check the roadmap first. See `CONTRIBUTING.md`. ## Model Used - Anthropic Claude Opus 5.5 (`claude-opus-5-5`), agentic coding with tool use (shell, file edits, test runs). ## Checklist - [x] I have included a thinking path that traces from project context to this change - [x] I have specified the model used (with version and capability details) - [x] I have checked ROADMAP.md and confirmed this PR does not duplicate planned core work - [x] I have searched GitHub for duplicate or related PRs and linked them above - [x] I have either (a) linked existing issues with `Fixes: #` / `Closes #` / `Refs #` OR (b) described the issue in-PR following the relevant issue template - [x] I have not referenced internal/instance-local Paperclip issues or links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip` URLs) - [x] My branch name describes the change (e.g. `docs/...`, `fix/...`) and contains no internal Paperclip ticket id or instance-derived details - [x] I have run tests locally and they pass - [x] I have added or updated tests where applicable - [x] I have updated relevant documentation to reflect my changes - [x] I have considered and documented any risks above - [ ] All Paperclip CI gates are green - [ ] Greptile is 5/5 with no open P2s, recommendations, or follow-ups - [x] I will address all Greptile and reviewer comments before requesting merge 🤖 Generated with [Claude Code](https://claude.com/claude-code) --------- Co-authored-by: Claude Opus 5.5 <noreply@anthropic.com>	2026-11-07 23:01:00 -06:00
DottaandClaude Opus 5.5	f755361ffe	fix(recovery): deliver a steered message the restart lost before the model read it (#19962 ) ## Thinking Path > - Paperclip is the open source app people use to manage AI agents for work > - A user can steer a running Codex or Pi turn: a comment goes into the live turn instead of waiting for the next run > - The provider acknowledges the steer at once, but the model reads it only at its next step, after the in-flight tool call > - A control-plane restart in that window kills the provider with the message in memory. Restart recovery starts a continuation turn that does not carry the message. The message is lost and no error shows > - The restart chaos harness showed this in 6 of 6 steered runs (Codex, K1, K2 and K6, 2 samples each): steer acknowledged, run succeeded, no reply to the steered message > - This pull request makes restart recovery deliver every acknowledged steer that the model did not read, exactly once > - The benefit is that manual Steer no longer loses messages on restart, and the planned automatic steering can ship on top of it ## Linked Issues or Issue Description What happened? A comment steered into a running Codex turn got no reply when a control-plane restart (SIGKILL, SIGTERM or crash loop) happened during the agent's tool call. The run succeeded, and the steered comment had no effect. Steps to reproduce 1. Start a Codex task that runs a 40-second command. 2. During the command, post a comment and click Steer. The provider acknowledges it. 3. Restart the control plane before the command ends. 4. Recovery resumes the turn with a continuation. The agent finishes the task and ignores the comment. Expected behavior The agent reads and handles the steered comment once, after recovery. Root cause The provider keeps acknowledged steering input in memory until its next model step. The restart continuation (`paperclip.native-continuation.v1`) only told the model to continue the current request, so the acknowledged input was gone. ## What Changed - `unreadSteeredMessageIds` (runner package): derives acknowledged-but-unread steers from run-log events in order. A `steering_acknowledgement` item adds the message id (once per id). A `userMessage` item in the same turn reads the oldest unread steer. Codex records each steered input as one `userMessage` item when it enters the conversation. A `userMessage` item in a later turn reads all earlier steers, because the continuation carries them. `turn.completed` reads all steers. - `readUnreadSteeredMessages` (server): reads those facts from `heartbeat_run_events` (only transport-validated events with a `sourceEventId`). It also reads the comment or interaction text for the same company and issue. The run log is the durable record of both "acknowledged" and "read", so no new column is needed. - The restart continuation now includes `steeredMessages` and one instruction to handle them, oldest first. The runtime reads them through a lazy `getUnreadSteeredMessages` option, only when a restart continuation starts. Native recovery wires it for every run. - `queuedInteractionSteeringBody` is extracted, so recovery rebuilds a steered interaction response with the same text the steer sent. - Fake Codex gets `--consume-steer`, which emits the `userMessage` item for an accepted steer, like real Codex. ## Verification - Red/green live test with real runnerd and fake Codex (`runnerd-restart-continuation.test.ts`, "delivers a steered message the restart lost exactly once"): start a held turn, steer it, SIGKILL runner and provider, restore and recover. - "unread": the continuation carries the message exactly once. Without the runtime change this test fails. - "read" (`--consume-steer`): the continuation does not carry it again. - Both: after the continuation completes, a later restart has nothing to deliver. - `steering-delivery.test.ts`: ordering, dedupe, initial-input, later-turn and completed-turn rules. - `unread-steered-messages.test.ts` (embedded Postgres): ignores events without a source id and messages from other issues. It reads interaction text, ignores model-output items as read evidence, and returns nothing after the continuation input. - `pnpm vitest run src/steering-delivery.test.ts src/live/runnerd-restart-continuation.test.ts` (runner) and `pnpm vitest run src/services/native-runtime/unread-steered-messages.test.ts` (server): pass on the rebased revision. - `issue-queued-comments-routes.test.ts` and `native-session-runtime.test.ts -t restart`: pass. `native-session-resume.test.ts` "archives a damaged prior epoch…" fails locally on plain `origin/master` too (local runnerd binary); CI runs it with a fresh build. - Restart chaos (Codex steer mode, K1/K2/K6) runs after this lands in the harness slot. Before: 0 of 6 steered messages answered. ## Risks - Duplicate delivery: a provider that records steered input without a `userMessage` item, or a `userMessage` event lost in the crash window before persistence, makes recovery send the message again. The model then sees it twice. That is safer than losing it, and the instruction asks the model to handle each one once. - Pi (ACPX) steering has no `userMessage` read evidence today, so a Pi steer that the model already read before a restart may arrive again in the continuation. - Only the restart continuation carries the messages. Other recovery paths start after a completed turn, which already read every steer. - No schema or migration change. A session saved by an earlier release resumes normally; its run log already holds the acknowledgement events. ## Model Used - Claude Opus 5.5 (`claude-opus-5-5`), Anthropic, via Claude Code with tool use (shell, file editing, test execution). ## Checklist - [x] I have included a thinking path that traces from project context to this change - [x] I have specified the model used (with version and capability details) - [x] I have checked ROADMAP.md and confirmed this PR does not duplicate planned core work - [x] I have searched GitHub for duplicate or related PRs and linked them above - [x] I have either (a) linked existing issues with `Fixes: #` / `Closes #` / `Refs #` OR (b) described the issue in-PR following the relevant issue template - [x] I have not referenced internal/instance-local Paperclip issues or links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip` URLs) - [x] My branch name describes the change (e.g. `docs/...`, `fix/...`) and contains no internal Paperclip ticket id or instance-derived details - [x] I have run tests locally and they pass - [x] I have added or updated tests where applicable - [x] I have updated relevant documentation to reflect my changes - [x] I have considered and documented any risks above - [ ] All Paperclip CI gates are green - [ ] Greptile is 5/5 with no open P2s, recommendations, or follow-ups - [x] I will address all Greptile and reviewer comments before requesting merge 🤖 Generated with [Claude Code](https://claude.com/claude-code) --------- Co-authored-by: Claude Opus 5.5 <noreply@anthropic.com>	2026-11-07 22:22:52 -06:00
DottaandClaude Opus 5.5	bf3a067076	feat(recovery): settle the finalizer and cleanup leases on the shared ownership path (#19950 ) ## Thinking Path > - Paperclip is the open source app people use to manage AI agents for work > - Native runs keep their ownership in `native_run_finalizations`, and the shared ownership reconciler now settles proven-gone owners (Phase 2 of the durable ownership plan) > - The finalizer lease (`native-finalizer:`, 5 min) and the retained-session cleanup lease (`native-cleanup:`, 60 s) recorded only a random token. They named no holder process > - A server killed while it finalized or cleaned up kept the run waiting for the whole lease. The lease was released by age alone. A graceful shutdown also keeps an in-progress finalizer lease for the next boot to wait out > - This pull request records the holder process with each claim and moves both kinds onto the shared prover and a compare-and-swap settle > - The benefit is that a dead holder's run continues in the first pass after boot, and a live or unprovable holder is never released ## Linked Issues or Issue Description Refs #19933 (the settle hook and the first moved kind, merged). What happened? A finalizer or cleanup lease whose server process died stayed held until the lease expired (5 min or 60 s). The run stayed `running` and its follow-up work waited. What did you expect? The next boot proves the dead holder gone and frees the lease at once. A live holder, or one that cannot be proven gone, keeps its lease. Steps to reproduce 1. Accept a native result and let the finalizer claim it. 2. Kill the server (SIGKILL) before the finalizer commits. 3. Start the server. The run stays `running` for up to 5 minutes. ## What Changed - `native_run_finalizations.lease_holder` (jsonb, migration 0446): `{token, bootId, pid, hostHash, processStartedAt}` of the process that took a token-only lease. It names the holder only while `token` equals `lease_owner`, so renewals keep it and a later lease never inherits it. The executor's `controller_*` columns are not changed. - The finalizer claim (`native-run-finalizer.ts`) and the cleanup claim (`native-session-executor.ts`) write it in the same UPDATE as the lease, from `currentControllerProcessStamp()` (no I/O). - New `native-token-lease-settlement.ts`: compare-and-swap settle that expires exactly the proven-gone holder's outstanding lease, after it notifies the finalization or cleanup work that the expiry frees. - Both claims also wake the ownership worker queue in their transaction, so a quiet worker watches the new holder (Greptile round 1). - `ownership-registry.ts`: `native_finalizer_lease` and `native_cleanup_lease` register `settle`. Their owner is the holder process; rows without a holder keep the token fence. Listings cover outstanding leases only. - `heartbeat/recovery.ts`: restart recovery settles both kinds before it finalizes and schedules cleanup. A failure is logged and the reconciler pass retries it. - Two sparse partial indexes on `lease_expires_at` for the two listings, so the settle watch re-check stays indexed. Bespoke code deleted: none. These kinds had no liveness check; their only release was lease age (the takeover in the claim), which stays as the fence for unprovable holders. ## Verification - `cd server && npx vitest run src/__tests__/heartbeat-native-restart-suspension.test.ts -t "finalizer\|cleanup\|holder\|exact lease"`: 12 passed (rerun after the rebase on master). The crash-point test also asserts the ownership wake for its run; it fails without the signal. - `cd server && npx vitest run src/__tests__/ownership-reconciliation-report.test.ts`: 17 passed. - Red on the base branch (server code at `bea3bfb20b`, tests and schema from this branch): 7 new tests fail, 5 pass (the 5 are existing tests). Red: the crash-point restart test, the two reconciler settle tests, the three live/unprovable counter-cases (owner was a token fence), and the exact-lease CAS test. The tests were written after the code. - New tests: - crash point: a finalizer claim was written and its holder killed before commit; the next restart finalizes the run, and this boot's claim stamps itself as holder; - a dead finalizer or cleanup holder is settled by a recording pass, never by a read-only pass (`record: false`); the accepted result and phase are untouched; - live counter-cases: a live earlier-boot PID (`pid_alive`), the current boot (`current_process`), a dead PID in another PID space (`different_process_space`, unprovable) keep the lease through a pass and a restart; - a holder written for another token, and a holderless row of the previous release, stay token fences, also with `PAPERCLIP_EPHEMERAL_SERVER=true`; - settle refuses a lease taken over after the proof (`owner_changed_since_proof`). - Not run locally: typecheck (CI runs it) and the wide suites. ## Risks - Previous-release story (rules/upgrade-safe-run-state.mdc): rows saved by the previous release have no `lease_holder`. They stay token fences and the existing claim takes them over at expiry. Neither lease outlives 5 min, so this covers at most 5 min after the upgrade. A rollback ignores the new column. - Unprovable holders (other host or PID space, unknown space): no operator action. The lease is short and self-expiring; at expiry the next claim takes it over and the old holder's next token compare-and-swap fails. That fence is the handoff. A different host is never proof. - The settle only expires a lease. Finalization and cleanup still run under their own checks (cleanup keeps its maintenance-history proofs). Settling ownership does not settle the accepted result, workspace preservation, or accounting. - Migration adds a nullable column and two partial indexes on a sparse predicate. Low risk. ## Model Used - Claude Opus 5.5 (`claude-opus-5-5`), Anthropic, via Claude Code with tool use (shell, file edits, local test runs). ## Checklist - [x] I have included a thinking path that traces from project context to this change - [x] I have specified the model used (with version and capability details) - [x] I have checked ROADMAP.md and confirmed this PR does not duplicate planned core work - [x] I have searched GitHub for duplicate or related PRs and linked them above - [x] I have either (a) linked existing issues with `Fixes: #` / `Closes #` / `Refs #` OR (b) described the issue in-PR following the relevant issue template - [x] I have not referenced internal/instance-local Paperclip issues or links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip` URLs) - [x] My branch name describes the change (e.g. `docs/...`, `fix/...`) and contains no internal Paperclip ticket id or instance-derived details - [x] I have run tests locally and they pass - [x] I have added or updated tests where applicable - [x] I have updated relevant documentation to reflect my changes - [x] I have considered and documented any risks above - [ ] All Paperclip CI gates are green - [ ] Greptile is 5/5 with no open P2s, recommendations, or follow-ups - [x] I will address all Greptile and reviewer comments before requesting merge 🤖 Generated with [Claude Code](https://claude.com/claude-code) --------- Co-authored-by: Claude Opus 5.5 <noreply@anthropic.com>	2026-11-07 22:16:34 -06:00
DottaandClaude Opus 5.5	779913333a	fix(documents): say whether an exact revision read is still current (#19939 ) ## Thinking Path > - Paperclip is the open source app people use to manage AI agents for work > - Task documents keep a revision history, and agents read and restore revisions through the API > - The exact-revision read returns one revision, but it does not say if that revision is still current > - An agent read the revision that it restored earlier by its ID and reported it as "latest", but another person had saved a newer edit > - This pull request adds the document's current revision to the exact-revision read > - The benefit is that a pinned read cannot pass as a read of the current document ## Linked Issues or Issue Description What happened In a chat eval, the agent restored a plan revision. Then another person saved a new revision. The user asked the agent to read the current plan. The agent called `GET /api/issues/{id}/documents/plan/revisions/{revisionId}` with the ID of its own restored revision. The response did not show that a newer revision existed. The agent reported the old revision as the latest and said that the read confirmed this. Expected behavior A read of one exact revision must show if that revision is still current, and which revision is current. Then the reader can see a newer edit and read the current document. Steps to reproduce 1. Save two revisions of a task plan. 2. Call `GET /api/issues/{id}/documents/plan/revisions/{firstRevisionId}`. 3. See that the response gives no sign that revision 2 is the current revision. ## What Changed - `getIssueDocumentRevision` now also returns `latestRevisionId`, `latestRevisionNumber` and `isLatest`. - Shared type `ExactDocumentRevision` describes this response. The UI client uses it. - The OpenAPI description of the exact-revision read names these fields and points to `GET /api/issues/{id}/documents/{key}` for the current text. - The service test checks `isLatest` for an older and a current revision. ## Verification - `cd server && pnpm exec vitest run src/__tests__/documents-service.test.ts src/__tests__/openapi-routes.test.ts` (42 passed). - `npx tsc --noEmit -p packages/shared` passes. ## Risks - Low risk. The change only adds fields to a read response. No caller removes or renames a field. No migration. ## Model Used - Anthropic Claude Opus 5.5 (`claude-opus-5-5`), with tool use and code execution. ## Checklist - [x] I have included a thinking path that traces from project context to this change - [x] I have specified the model used (with version and capability details) - [x] I have checked ROADMAP.md and confirmed this PR does not duplicate planned core work - [x] I have searched GitHub for duplicate or related PRs and linked them above - [x] I have either (a) linked existing issues with `Fixes: #` / `Closes #` / `Refs #` OR (b) described the issue in-PR following the relevant issue template - [x] I have not referenced internal/instance-local Paperclip issues or links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip` URLs) - [x] My branch name describes the change (e.g. `docs/...`, `fix/...`) and contains no internal Paperclip ticket id or instance-derived details - [x] I have run tests locally and they pass - [x] I have added or updated tests where applicable - [x] I have updated relevant documentation to reflect my changes - [x] I have considered and documented any risks above - [ ] All Paperclip CI gates are green - [ ] Greptile is 5/5 with no open P2s, recommendations, or follow-ups - [x] I will address all Greptile and reviewer comments before requesting merge 🤖 Generated with [Claude Code](https://claude.com/claude-code) --------- Co-authored-by: Claude Opus 5.5 <noreply@anthropic.com>	2026-11-07 21:29:24 -06:00
DottaandClaude Opus 5.5	f5400e2594	feat(recovery): settle the accepted-result lease on the shared ownership path (#19933 ) ## Thinking Path > - Paperclip is the open source app people use to manage AI agents for work. > - A control-plane restart can kill the controller after an agent's result is accepted. The result then stays leased to a dead process. > - Today a private sweep (`native-dead-controller-result-lease.ts`, #19713) proves that controller dead with its own liveness rules. > - The durable-ownership plan (#19831) replaces private proofs with one prover (`proveOwnerGone`, #19853) and one registry (#19861). > - This pull request moves the accepted-result executor lease to that shared path and deletes the private sweep. It is Phase 2's first kind. > - The benefit is one tested rule for when a dead owner's result lease is released, and the reconciler now repairs a lease that restart recovery missed. ## Linked Issues or Issue Description Refs #19831 (plan), #19853 (prover), #19861 (registry), #19713 (old sweep), #19883 (legacy host fallback), #19927 (Phase 2 data). What happened? The accepted-result lease had its own liveness proof, separate from the shared prover. The reconciler could only report a dead owner, not settle it. When restart recovery missed a lease, it waited out the 20-minute lease. What did you expect? One prover decides, and both restart recovery and the periodic reconciler pass settle a lease whose controller is proven gone. Steps to reproduce 1. Accept a native run result. 2. Kill the controller (SIGKILL) and start a new server. 3. If the restart sweep does not see the row, the result stays leased until the lease expires. ## What Changed - `ownership-registry.ts`: a kind may register `settle` and `onUnprovable`. `native_accepted_result_lease` registers both. Other kinds stay report-only. - New `native-accepted-result-lease-settlement.ts`: a compare-and-swap settle that expires exactly the proven owner's lease. It keeps the old guards: the run must still be `running`, remote copyback stays fenced, and a lease taken over since the proof is left alone. - `ownership-invariant-report.ts`: the pass calls `settle` on `gone` and `onUnprovable` on `unprovable`. A read-only pass (`record: false`) never settles. New `settleOwnableKind()` for restart recovery. - `heartbeat/recovery.ts`: restart recovery calls `settleOwnableKind("native_accepted_result_lease")` instead of the old sweep. - Deleted `native-dead-controller-result-lease.ts`. - `owner-proof.ts`: accepts a board attestation (`operator_attested`). It also keeps the one-release local fallback for rows saved before their PID space was recorded, on single-host servers only, and flags each use so it is logged (`legacy_host_unknown_dead_pid_proof`, #19883). An ephemeral server returns `unprovable` (`process_space_unrecorded`) and the existing "confirm the previous server stopped" board action is raised. ## Verification - `cd server && npx vitest run src/__tests__/heartbeat-native-restart-suspension.test.ts`: 27 pass, 7 of them new. - `npx vitest run src/services/owner-proof.test.ts src/__tests__/ownership-reconciliation-report.test.ts`: pass. - Red/green (tests written after the code): 5 new behaviour tests fail on master and pass here. They cover the ephemeral board action, the reconciler-pass settle, the live-owner counter-case in that pass, the legacy marker, and operator attestation. The stamped-dead-controller and foreign-PID-space cases pass on both, as the old path behaved the same. - Server typecheck passes (`npx tsc --noEmit -p server/tsconfig.json`). - Not run locally: the full server suite (`pnpm verify` asks for broad coverage because a file was deleted). Required CI covers it. ## Risks - Previous-release story (rules/upgrade-safe-run-state.mdc): NRF rows saved before #19868 have no `controller_host_hash`. They keep the same one-release local proof as before on single-host servers, and each use is logged. On ephemeral servers they stay unprovable and ask the board, as before. Rows on another PID space keep their lease (the fence), as before. - Fail-open risk: settle is compare-and-swap on the lease token, boot, PID, host hash and start time of the proven owner. An `unprovable` owner is never released. Live-owner and foreign-space cases are tested. - No change adds work before `turn.start`. ## Model Used - Claude Opus 5.5 (`claude-opus-5-5`), Anthropic, in Claude Code with tool use (shell, file edits). ## Checklist - [x] I have included a thinking path that traces from project context to this change - [x] I have specified the model used (with version and capability details) - [x] I have checked ROADMAP.md and confirmed this PR does not duplicate planned core work - [x] I have searched GitHub for duplicate or related PRs and linked them above - [x] I have either (a) linked existing issues with `Fixes: #` / `Closes #` / `Refs #` OR (b) described the issue in-PR following the relevant issue template - [x] I have not referenced internal/instance-local Paperclip issues or links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip` URLs) - [x] My branch name describes the change (e.g. `docs/...`, `fix/...`) and contains no internal Paperclip ticket id or instance-derived details - [x] I have run tests locally and they pass - [x] I have added or updated tests where applicable - [x] I have updated relevant documentation to reflect my changes - [x] I have considered and documented any risks above - [ ] All Paperclip CI gates are green - [ ] Greptile is 5/5 with no open P2s, recommendations, or follow-ups - [ ] I will address all Greptile and reviewer comments before requesting merge 🤖 Generated with [Claude Code](https://claude.com/claude-code) --------- Co-authored-by: Claude Opus 5.5 <noreply@anthropic.com>	2026-11-07 20:58:04 -06:00
DottaandClaude Opus 5.5	18644a3263	feat(recovery): instrument 20 durable write boundaries with crash points (#19938 ) ## Thinking Path > - Paperclip is the open source app people use to manage AI agents for work > - A control-plane restart between two durable writes leaves an in-progress record owned by a dead process > - #19937 added `crashPoint(name)` and a registry of 20 named boundaries from the Phase 0 inventory > - A name without a call site cannot fire, so the crash-point suite cannot test it > - This pull request puts one call at each registered boundary and adds a test that keeps the registry and the call sites in step > - The benefit is that the on-demand suite (next pull request) can kill the control plane at every known write-ahead gap ## Linked Issues or Issue Description Refs #19831 (plan, Phase 5). Refs #19846 (inventory, "Write-ahead coverage"). Stacked on #19937 (helper and registry). Refs #19861 (ownable kind ids). Problem The registered crash points have no call sites. Expected behavior Each registered point is called at its gap: after the first durable write or outside effect returns, before the next one starts. Disarmed (always in production) each call is one comparison. Scope Call sites and a coverage test only. The suite runner and CI workflow follow. ## What Changed - Server call sites (`@paperclipai/shared/crash-points`): - `sandbox-creation-operations.ts`: around the provider `create` call (intent → provider → lease). - `native-session-executor.ts`: after `native.process_start_requested`, before spawn. - `paperclip-control-plane-port.ts`: after the result-accept transaction, before finalization starts (only when a result was inserted). - `native-run-finalizer.ts`: after `commitNativeStatusDecision`, before the run projection. - `workspace-operations.ts`: `workspace_finalize` only — after the running row, and after `settle()` before the done row. - `environment-runtime.ts`: provider release → lease row; teardown claim → destroy; reusable destroy → lease release; stop-and-retain claim → stop. - `heartbeat.ts`: lease release → runtime services; budget reservation hold → dispatch. - `heartbeat/queue.ts`: run claimed `running` → wake request `claimed`. - `run-cost-accounting.ts`, `usage-receipts.ts`: accounting commit → spool unlink; receipt spool → DB row → unlink. - `packages/paperclip-runner/src/crash-point.ts`: a small copy of the helper for controller code in this package, which does not depend on `@paperclipai/shared` (adding that dependency would change the runner content ID). It arms only `runner.*` names. runnerd never sees the variable: its environment is an allowlist. - Runner call sites: after the runnerd spawn, before its identity is published (both spawn paths); `turn.start` result received → controller journal saved → next send. - `server/src/__tests__/crash-point-call-sites.test.ts`: every registered point has a call site, every call names a registered point, and every `kinds` entry is an ownable kind id of the Phase 1 registry. ## Verification - `cd server && npx vitest run src/__tests__/crash-point-call-sites.test.ts` → 3 passed. - `pnpm --filter @paperclipai/server typecheck` → clean. `pnpm --filter @paperclipai/paperclip-runner exec tsc --noEmit -p .` → clean. - Behavior with nothing armed is unchanged: each call returns at its first comparison (measured in #19937: about 3.7 ns). ## Risks - Low risk. No call changes control flow unless `PAPERCLIP_CRASH_POINT` names it and `NODE_ENV` is not `production`. - Points on the path before `turn.start` (process start, runner spawn) cost nanoseconds, within plan invariant 8. - `usage-receipts.ts`: the persist-then-unlink one-liner became a block with the same statements in the same order. - The runner package change gives the runner a new content ID, as any runner source change does. No persisted run state changes (rules/upgrade-safe-run-state.mdc). ## Model Used - Claude Opus 5.5 (`claude-opus-5-5`), Anthropic, via Claude Code with tool use (shell, file edits) and a read-only exploration subagent that mapped the boundaries. ## Checklist - [x] I have included a thinking path that traces from project context to this change - [x] I have specified the model used (with version and capability details) - [x] I have checked ROADMAP.md and confirmed this PR does not duplicate planned core work - [x] I have searched GitHub for duplicate or related PRs and linked them above - [x] I have either (a) linked existing issues with `Fixes: #` / `Closes #` / `Refs #` OR (b) described the issue in-PR following the relevant issue template - [x] I have not referenced internal/instance-local Paperclip issues or links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip` URLs) - [x] My branch name describes the change (e.g. `docs/...`, `fix/...`) and contains no internal Paperclip ticket id or instance-derived details - [x] I have run tests locally and they pass - [x] I have added or updated tests where applicable - [x] I have updated relevant documentation to reflect my changes - [x] I have considered and documented any risks above - [ ] All Paperclip CI gates are green - [ ] Greptile is 5/5 with no open P2s, recommendations, or follow-ups - [x] I will address all Greptile and reviewer comments before requesting merge 🤖 Generated with [Claude Code](https://claude.com/claude-code) --------- Co-authored-by: Claude Opus 5.5 <noreply@anthropic.com>	2026-11-07 20:56:33 -06:00
DottaandClaude Opus 5.5	2a2d3f6e23	fix(ui): stop refetching the @task mention pool on every task event (#19931 ) ## Thinking Path > - Paperclip is the open source app people use to manage AI agents for work > - The board UI keeps its caches fresh from live events in `LiveUpdatesProvider` > - Each task activity event invalidates the whole `["issues", companyId]` query prefix > - That prefix also holds the `@task` mention pool: the 100 most recently updated tasks, about 315 KB per response > - A chat turn emits many comment, status and run events, so an open task page downloads that list again for almost every event > - This pull request keeps the pool fresh from push events without a refetch per event: a closed server flag marks real membership or title changes, progress on pooled tasks reorders the cache in place, and other progress refetches at most once per 30 seconds > - The benefit is less bandwidth and CPU for users with an open task or chat, and smaller eval traces ## Linked Issues or Issue Description What happened While a task chat page is open, the browser repeats `GET /api/companies/:id/issues?limit=100&sortField=updated&sortDir=desc` (about 315 KB each). One 10-minute chat-eval attempt recorded about 194 of these requests. The trigger is `invalidateActivityQueries` in `ui/src/context/LiveUpdatesProvider.tsx`. For every `entityType: "issue"` activity event, it invalidates `queryKeys.issues.list(companyId)`. That prefix matches `queryKeys.issues.mentionPool(companyId)`, which `IssueDetail` (and `NewIssueDialog`) keep active for the `@task` picker. Invalidation refetches active queries and ignores `staleTime`. Expected behavior Comments, run progress and status changes on any task do not download the full mention pool again. The pool still updates when a task that the picker can show is created, deleted or renamed. Steps to reproduce 1. Run `pnpm dev` and create a company with about 140 tasks. 2. Open a task page, for example `/REF/issues/REF-1`. 3. Every 4 seconds for 15 rounds, post comments on the open task, on a task in the top 100, and on a task outside the top 100, and change the open task's priority (60 events). 4. Count requests to `issues?limit=100&sortField=updated`. Before this change there are 15 (about 3.3 MB). After this change there are 2 (about 480 KB). ## What Changed - New shared helper `issueActivityChangesTaskIdentity` (`packages/shared/src/issue-activity-identity.ts`). It is true for a created, deleted, hidden, unhidden or renamed task. - `server/src/realtime/live-events-ws.ts`: task `activity.logged` events now carry the closed boolean `taskIdentityChanged`. Authenticated sockets still get no `details`; the flag carries no task content. - `ui/src/context/LiveUpdatesProvider.tsx` refreshes the mention pool this way: - The task identity flag is true (or full details show a create, delete, hide, unhide or rename): the pool refetches at once. - Other events on a task already in the pool: the task moves to the front of the cached list. There is no request. The freshness clock does not change, and a pending invalidation is never overwritten. - Other events on a task outside the pool: one trailing refetch at most every 30 seconds, because the task can now be in the top 100. - The picker is closed: the pool is only marked stale. - `ui/src/lib/query-invalidation-batcher.ts`: new `excludingQueryKeys()` keyed exclusion predicate. The batcher coalesces it and uses it for prefix coverage. The broad `["issues", companyId]` invalidation uses it to skip the pool, so a burst is again one broad refresh per batch. - Tests: `ui/src/context/LiveUpdatesProvider.mention-pool.test.ts` (authenticated event shape, hide and unhide, the 30-second window, reorder safety, a burst through the batcher), new batcher tests, `packages/shared/src/issue-activity-identity.test.ts`, and socket assertions in `server/src/__tests__/live-events-toast.test.ts`. ## Verification - `cd ui && npx vitest run src/context/LiveUpdatesProvider src/lib/query-invalidation-batcher`: 231 tests pass. - `cd server && npx vitest run src/__tests__/live-events-toast.test.ts`: 11 tests pass. In authenticated mode the socket keeps `details` off and sends `taskIdentityChanged` (false for routine updates, true for a create, rename or hide). - `cd packages/shared && npx vitest run src/issue-activity-identity.test.ts`: 14 tests pass. - The new UI tests fail against the first commit of this PR: the authenticated burst, hide, unhide, the 30-second window and the batcher burst. - `tsc --noEmit` for ui, server and shared: no new errors. - Browser measurement: a local `pnpm dev` instance (local trusted), headless Chromium on a task page, 141 tasks, 60 events over about 63 seconds (the reproduction steps above): - Before (master UI): 15 mention-pool requests, about 3.3 MB. - After: 2 requests, about 480 KB (one per 30-second window). - Freshness after the fix: one rename, hide, unhide or create each caused 1 refetch. A priority change caused 0. - I did not run a browser session in authenticated mode. The authenticated event shape is covered by the socket test and the UI unit tests. ## Risks - A task that moves into the top 100 can be missing from the `@task` picker for up to 30 seconds. - The cached order is approximate between refetches: a moved task goes to the front, but its `updatedAt` value is not changed. - Other queries under `["issues", companyId]` (descendants, created-from, summaries, onboarding first task) still refresh for each event batch. They are small, but they can get the same treatment later. ## Model Used - Anthropic Claude Opus 5.5 (`claude-opus-5-5`), with tool use and code execution in Claude Code. ## Checklist - [x] I have included a thinking path that traces from project context to this change - [x] I have specified the model used (with version and capability details) - [x] I have checked ROADMAP.md and confirmed this PR does not duplicate planned core work - [x] I have searched GitHub for duplicate or related PRs and linked them above - [x] I have either (a) linked existing issues with `Fixes: #` / `Closes #` / `Refs #` OR (b) described the issue in-PR following the relevant issue template - [x] I have not referenced internal/instance-local Paperclip issues or links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip` URLs) - [x] My branch name describes the change (e.g. `docs/...`, `fix/...`) and contains no internal Paperclip ticket id or instance-derived details - [x] I have run tests locally and they pass - [x] I have added or updated tests where applicable - [x] I have updated relevant documentation to reflect my changes - [x] I have considered and documented any risks above - [ ] All Paperclip CI gates are green - [ ] Greptile is 5/5 with no open P2s, recommendations, or follow-ups - [x] I will address all Greptile and reviewer comments before requesting merge 🤖 Generated with [Claude Code](https://claude.com/claude-code) --------- Co-authored-by: Claude Opus 5.5 <noreply@anthropic.com>	2026-11-07 20:55:39 -06:00
DottaandClaude Opus 5.5	4a8c8003fd	feat(recovery): add the crashPoint helper and crash-point registry (#19937 ) ## Thinking Path > - Paperclip is the open source app people use to manage AI agents for work > - A control-plane restart can land between two durable writes and leave an in-progress record owned by a dead process > - The restart-chaos campaign found these windows (20 ms–1 s) by luck, with random kill timing > - The durable ownership plan (Phase 5, "Testing: enumerate crash points") asks for named crash points at each durable write boundary, so a suite can kill the process at each one on purpose > - Phases 2–4 run in parallel and need the helper early for their per-kind tests > - This pull request adds only the `crashPoint` helper and the registry of named points > - The benefit is one shared, zero-cost way to mark a boundary and to arm it in a test ## Linked Issues or Issue Description Refs #19831 (plan, "Testing: enumerate crash points", Phase 5). Refs #19846 (Phase 0 inventory). Refs #19861 (Phase 1 registry; the crash-point `kinds` use its kind ids). Problem No code marks the durable write boundaries. A test cannot stop the control plane at a chosen boundary, so restart bugs are found only when random chaos timing hits a window. Expected behavior A call `crashPoint("<name>")` at each boundary. In test mode an environment variable makes the process SIGKILL itself at the nth hit of one name. In production the call does nothing and costs nothing measurable. Scope Helper and registry only. The call sites, the suite runner and the CI workflow follow in separate pull requests. ## What Changed - `packages/shared/src/crash-points.ts` (subpath export `@paperclipai/shared/crash-points`, server-side only): - `crashPoint(name)`. Disarmed, it is one comparison against a module constant. - `PAPERCLIP_CRASH_POINT=<name>[:<nth>]` arms one point when the module loads. The nth hit appends a JSON receipt to `PAPERCLIP_CRASH_POINT_RECEIPT` (optional), writes a `[crash-point]` line to stderr, and sends SIGKILL to the process. - `PAPERCLIP_CRASH_POINT_GATE=<file>` (optional): hits before the file exists do not count, so setup work cannot fire the point. - The variable is ignored when `NODE_ENV=production`. An unknown name throws at import, so a typo cannot arm nothing. - `armCrashPointForTest(spec)` throws `CrashPointReached` at the nth hit instead, for in-process per-kind tests (Phases 2–4). It returns a disarm function. - `packages/shared/src/crash-point-registry.ts` (browser-safe data): 20 named points from the inventory's write-ahead table. Each has a description, the environments that reach it (local, Daytona), the ownable kind ids it affects, and the invariants (I1–I8) at risk. Names follow `<subsystem>.<record>.<before\|after>_<step>`. - `packages/shared/src/crash-points.test.ts`: registry shape, spec parsing, throw mode, real SIGKILL of a child process with a receipt, the gate, production disarm, unknown-name refusal, and a disarmed-cost check. ## Verification - `cd packages/shared && npx vitest run src/crash-points.test.ts` → 11 passed. - Disarmed cost on an M-series Mac: `crashPoint disarmed: 3.66 ns/call (empty call 0.61 ns)`. A turn passes a handful of points, so the added time before `turn.start` is in nanoseconds (plan invariant 8). The test fails if the cost exceeds an empty call by more than 10 ns. - `cd packages/shared && npx tsc --noEmit -p .` → clean. ## Risks - Low risk. Nothing calls `crashPoint` yet, and nothing reads the variable in production. - An operator who sets `PAPERCLIP_CRASH_POINT` on a non-production server makes it kill itself. The variable name and the `[crash-point] armed` stderr line make this visible. - No persisted run state changes (rules/upgrade-safe-run-state.mdc: no previous-release story is needed). ## Model Used - Claude Opus 5.5 (`claude-opus-5-5`), Anthropic, via Claude Code with tool use (shell, file edits) and a read-only exploration subagent. ## Checklist - [x] I have included a thinking path that traces from project context to this change - [x] I have specified the model used (with version and capability details) - [x] I have checked ROADMAP.md and confirmed this PR does not duplicate planned core work - [x] I have searched GitHub for duplicate or related PRs and linked them above - [x] I have either (a) linked existing issues with `Fixes: #` / `Closes #` / `Refs #` OR (b) described the issue in-PR following the relevant issue template - [x] I have not referenced internal/instance-local Paperclip issues or links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip` URLs) - [x] My branch name describes the change (e.g. `docs/...`, `fix/...`) and contains no internal Paperclip ticket id or instance-derived details - [x] I have run tests locally and they pass - [x] I have added or updated tests where applicable - [x] I have updated relevant documentation to reflect my changes - [x] I have considered and documented any risks above - [ ] All Paperclip CI gates are green - [ ] Greptile is 5/5 with no open P2s, recommendations, or follow-ups - [x] I will address all Greptile and reviewer comments before requesting merge 🤖 Generated with [Claude Code](https://claude.com/claude-code) --------- Co-authored-by: Claude Opus 5.5 <noreply@anthropic.com>	2026-11-07 20:37:32 -06:00
DottaandClaude Opus 5.5	7fd98682ca	fix(workspaces): give every subtask its own execution workspace (#19860 ) ## Thinking Path > - Paperclip is the open source app people use to manage AI agents for work > - Agents split work into child tasks, and each task runs in an execution workspace (a checkout, branch, or sandbox folder) > - Since early 2026, a new child task used its parent's realized workspace by default: the same checkout, branch and sandbox > - A parent and its child often run at the same time. Two writers in one folder lose each other's files, the waking parent is cancelled with `workspace_busy`, and sandbox lease ownership crosses from the parent into the child, so retained-file recovery refuses the workspace as ambiguous > - The product rule is simple: a subtask gets its own workspace, independent of the parent's saved files. Paperclip never needs to carry a parent's unmerged changes into a child > - This pull request makes that the only behaviour on every creation path, and moves existing shared children to their own workspace on their next run, with no user or admin action > - The benefit is that parents and children never block or overwrite each other, and recovery ownership stays with one task ## Linked Issues or Issue Description What happened? A child task inherited its parent's realized execution workspace by default (`createChild` defaulted to `executionWorkspaceInheritanceMode: "linkage"`, and `issueService.create` fell back from `inheritExecutionWorkspaceFromIssueId` to `parentId`). When the parent woke while the child wrote to the shared workspace, the parent run was cancelled with `workspace_busy`. In sandbox environments, the lease ownership chain crossed from the parent into the child, and retained-file recovery refused the workspace with `allocation_ownership_ambiguous`. Expected behavior Every new child task gets its own execution workspace, realized from the project base exactly as a top-level task in that project. It never uses the parent's checkout, branch, saved snapshot or unmerged changes. A parent and its descendant never share a workspace by any route. Steps to reproduce 1. Run a parent task in a project with isolated (git worktree) or sandbox workspaces, so the parent has a realized execution workspace. 2. From the parent run, create a child task with only `parentId` (or through the runner `create_task` tool, chat suggestions, decision effects, plugins, or the New sub-task dialog). 3. See that the child's `executionWorkspaceId` is the parent's, with `executionWorkspacePreference: "reuse_existing"`. 4. Wake the parent while the child runs in a sandbox environment. The parent run is cancelled with `workspace_busy`. Additional context Refs #9233 (the existing `strategy_only` opt-out). The opt-out `executionWorkspaceInheritanceMode: "strategy_only"` already existed for accepted-plan decomposition. This change makes that behaviour (tightened to drop a pinned existing branch) the only behaviour. ## What Changed - One rule for every creation path (`server/src/services/issues.ts`). `issueService.create` still uses the parent (or `inheritExecutionWorkspaceFromIssueId`) as a source for the project, project workspace and workspace strategy, but it never copies the source's `executionWorkspaceId`, `reuse_existing` preference, or pinned existing branch. All server paths that create a task go through `create()`/`createChild()`: issue routes (`POST /issues`, `POST /issues/:id/children`, the run-bound default parent and run workspace source), runner `create_task`, chat suggestion acceptance, native status decisions, accepted-plan decomposition, decision effects, plugins (`ctx.issues.create`), external agents, watchdog follow-ups, monitor recovery issues, case handoffs and email channels. - Explicit ancestor workspaces are dropped. If a create names an `executionWorkspaceId` (or an `existing` workspace selection) that an ancestor of the new task created or is bound to, `create()` drops it and keeps only the strategy. Older clients and skills that copied the parent's id keep working and get an independent workspace. - `createChild` no longer has a "linkage" mode. `executionWorkspaceInheritanceMode` is still accepted from internal callers and is ignored. - `inheritExecutionWorkspaceFromIssueId` decision. I kept the field for API compatibility, but it now copies only the source issue's project and workspace strategy. I removed its workspace-sharing behaviour for every pair, not only parent/child: the source task and its follow-up can run at the same time (the runner, watchdog and status-decision callers all create the follow-up while the source run is live), so sharing would again let two tasks write one folder. Explicit sharing between unrelated tasks stays available through an explicit `existing` workspace selection. - New `server/src/services/task-workspace-lineage.ts`. `buildIndependentTaskWorkspaceSettings` (strategy only: mode, environment, runtime, network egress, shared-workspace concurrency, base ref, branch template, commands; no `reuse_existing`, no `operator_branch`, no `existingBranch`), `loadTaskLineageIssueIds` (the parent chain plus, for a task that depth placement put beside its requester, the requester's chain via `privacyParentIssueId`) and `isAncestorExecutionWorkspace` (the workspace's `sourceIssueId` is in that lineage, or a lineage issue is bound to it). A child in another project does not take the parent's strategy. - Upgrade-safe rebind at admission. `executionWorkspaceService.releaseAncestorWorkspaceBindingAtAdmission` runs at the same admission point as the pending workspace selection (`heartbeat.ts`). For a child (or a flattened task beside its requester) that an older release bound to an ancestor's workspace, it clears the child's binding (keeps the project workspace and strategy, bumps the binding revision) so the run realizes the child's own workspace. It does nothing while another run of the child is running, while the child's earlier run still owns workspace finalization or recovery, for native restart/lease-owner recovery, for a process-loss retry, or for a Retry that keeps the current workspace. The parent and its workspace are never changed. - Projects without a project workspace (per-task repository acquisition). A parent with no project workspace worked in its own task files, so its settings (for example `isolated_workspace`) do not describe the project base. A child of such a parent, and an older child released from one, takes the project's defaults exactly like a top-level task, instead of an isolated mode that would resolve to a git worktree with no git base ("needs a project / project workspace"). When the child's new workspace is created at admission, `executionWorkspaceRepositoryService.prepareForAdmission` repeats the parent's (or requester's) repository requests as the child's own pending requests (identity, URL, catalog id and requested ref only; no pinned commit, branch or files). The normal acquisition path then clones a fresh copy into the child's task files with the child's own access checks. This runs only for a workspace created by that admission, so existing tasks never gain repositories. - UI. The New sub-task dialog no longer pre-selects the parent's workspace. `buildSubIssueDefaults` drops `executionWorkspaceId` and `reuse_existing`, and derives the parent's independent mode (`shared_workspace`, `isolated_workspace` or `agent_default`) from its preference, saved settings or current workspace. The "This sub-task will no longer use the parent task workspace" warning is removed. - Contracts and docs. Shared validator and plugin SDK comments describe the new meaning of `inheritExecutionWorkspaceFromIssueId`. Updated `doc/execution-semantics.md` (new rule in §6 and a wording fix in the retained-sandbox paragraph), `doc/SPEC-implementation.md` (child workspace rule, requester keeps strategy inheritance, watchdog follow-ups), `doc/SPEC.md` (task workspace ownership), `docs/specs/external-task-protocol.md`, `skills/paperclip/SKILL.md` (step 9 and the workspace bullet), `skills/paperclip/references/issue-workspaces.md`, the CEO onboarding `HEARTBEAT.md`, and the plugin SDK README. ### Previous-release story (`rules/upgrade-safe-run-state.mdc`) - Migrated on next admission. A child that the previous release bound to its parent's (or any ancestor's) execution workspace keeps that binding until its next normal admission. Then the server clears the binding and the run realizes the child's own workspace from the project base. No schema migration is needed. No user or admin action is needed. - In-flight writers finish first. A running child is not interrupted. Its current run, its native restart recovery (admitted native input or lease owner), a process-loss retry, and a Retry that keeps the current workspace all finish in the shared workspace. While a child's earlier run is still running or its workspace finalization or recovery is unsettled, the binding stays and a later admission releases it. - No files are dropped. The release changes only the child's binding row. The parent keeps its binding, and the shared workspace row, folder, branch and saved snapshots are not touched. Anything the child left there stays in the parent's workspace. - No new refusal codes. Saved run identity (native execution input, leases, checkpoints) is not changed or refused; the rebind only affects new admissions. ## Verification - New `server/src/__tests__/subtask-workspace-independence.test.ts` (embedded Postgres): `create` with `parentId`, `createChild` with no mode / `"linkage"` / `"strategy_only"`, `inheritExecutionWorkspaceFromIssueId` pointing at the parent, explicit parent and grandparent `executionWorkspaceId`, a non-child follow-up, and unchanged top-level defaults and explicit top-level reuse. 7 creation cases fail on `master` and pass with this change. Admission cases: an old-release child is rebound while its parent is running and the parent keeps its workspace; a running child is not rebound (deploy lands mid-run); an unrelated explicit share is kept; the parent is never rebound. - New heartbeat case in `server/src/__tests__/heartbeat-workspace-busy.test.ts`: an old-release child bound to its running parent's workspace in a sandbox environment runs to `succeeded` with no `workspace_busy`, gets a new workspace, and the parent run and binding stay unchanged. It fails on `master` (the child waits with `workspace_busy`). - Updated tests that asserted the old inheritance in `issues-service.test.ts`, `task-workspace-binding.test.ts`, `chat-project-tools.test.ts`, `task-workspace-child-trust.test.ts`, `heartbeat-git-restore-point-resume.test.ts` (a child bound to a closed parent's expired workspace now starts from the project base and leaves the parent's restore point alone), and `ui/src/lib/subIssueDefaults.test.ts`. Remote-workspace reservation, continuation and writer-wait suites now seed the older-release shared shape directly (or an unrelated explicit share), so those safety paths stay covered. - `npx vitest run` on the changed suites and about 45 related server suites (heartbeat workspace, recovery admission, issue routes, routines, plugins), `ui` `subIssueDefaults` and `NewIssueDialog` tests, `pnpm check:token-gates`, `pnpm -r typecheck`. - New `server/src/__tests__/heartbeat-subtask-acquired-repository.test.ts`: a project with no project workspace, a parent whose task files hold an acquired repository with an unmerged change, and a child (new, and the older-release shape bound to the parent's workspace) that runs to `succeeded` in its own task files with a fresh clone at the project base and its own ready repository receipt. The parent's checkout keeps its change. Both cases fail on the previous head with "needs a project / project workspace". ## Risks - Project-level configuration still applies to children exactly as to top-level tasks. In a project configured for `shared_workspace`, every task (top-level or child) uses the project's one folder under the existing shared-workspace concurrency policy. A branch that the project itself pins applies to every task in the project. This PR removes only the parent-to-child carry-over of the realized workspace; it does not change those project defaults. - Standalone follow-ups that an older release bound through `inheritExecutionWorkspaceFromIssueId` are migrated only when the source is in their recorded lineage (parent or privacy parent). Others keep their explicit share and the existing writer-wait serialization. - Behaviour change for agents that relied on a shared checkout. A child or follow-up no longer sees the parent's unpushed or uncommitted changes. Agents must push or merge code they want a subtask to build on. The skill and onboarding text now say this. - Explicit ancestor workspace ids are silently dropped instead of rejected, so older clients do not break. The task gets an independent workspace. - First run of a migrated child starts from the project base. If an older child had uncommitted work in the parent's workspace, that work stays in the parent's workspace and is not copied into the child's new workspace. - Admission adds one indexed read for tasks with a parent and a bound workspace; the locking transaction and ancestor query run only when the bound workspace was created by another issue. ## Model Used - Claude Opus 5.5 (Anthropic), model ID `claude-opus-5-5`, used through Claude Code with tool use (file edits, shell, test execution) and extended reasoning. ## Checklist - [x] I have included a thinking path that traces from project context to this change - [x] I have specified the model used (with version and capability details) - [x] I have checked ROADMAP.md and confirmed this PR does not duplicate planned core work - [x] I have searched GitHub for duplicate or related PRs and linked them above - [x] I have either (a) linked existing issues with `Fixes: #` / `Closes #` / `Refs #` OR (b) described the issue in-PR following the relevant issue template - [x] I have not referenced internal/instance-local Paperclip issues or links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip` URLs) - [x] My branch name describes the change (e.g. `docs/...`, `fix/...`) and contains no internal Paperclip ticket id or instance-derived details - [x] I have run tests locally and they pass - [x] I have added or updated tests where applicable - [x] I have updated relevant documentation to reflect my changes - [x] I have considered and documented any risks above - [x] All Paperclip CI gates are green - [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups - [x] I will address all Greptile and reviewer comments before requesting merge 🤖 Generated with [Claude Code](https://claude.com/claude-code) --------- Co-authored-by: Claude Opus 5.5 <noreply@anthropic.com>	2026-11-07 18:34:09 -06:00
DottaandClaude Opus 5.5	5f1b1bb81d	fix(recovery): continue from the last save when a retained source cannot be verified (#19867 ) ## Thinking Path > - Paperclip is the open source app people use to manage AI agents for work. > - When a native run cannot save its files, a retained-file recovery hold blocks the task until the worker saves them from the retained sandbox. > - The worker verifies the recorded source strictly. This includes the reusable-lease chain of the sandbox. > - A reusable sandbox chain can cross from a parent task into a child task. The check then refuses the source with `allocation_ownership_ambiguous` on every attempt. > - Retry repeats the same refusal. The task stays blocked by three gates: the saved-work wait, the repair flag and the remote writer hold. The only text left tells a person to inspect the run and its environment. > - The source check must stay strict. Recovery must still work without a person. > - This pull request adds an automatic fallback: the task continues from its last committed workspace save, the unverified files are attached to the task but never applied, and the unverified workspace epoch is abandoned so its root is never reused. > - The benefit is that tasks with an unverifiable retained source continue by themselves, with no lost saved work and no admin action. ## Linked Issues or Issue Description Refs #19840 (removes the "inspect the run and its environment" text and keeps Retry; this change removes the need for that Retry). What happened? A child task ran in a reusable sandbox that it inherited from its parent task. The run saved a checkpoint, wrote more files, and then failed to save them. Retained-file recovery refused the source with `allocation_ownership_ambiguous`, because the lease history of the sandbox crosses into the parent task. The hold was exhausted after one attempt. Retry made a new generation that failed the same way. The task stayed blocked with `saved_work_recovery_failed`, `workspaceRepairRequired: true`, and the failed run still the dirty writer of the workspace. A second task had a stale exhausted hold for a run whose files a sibling recovery action had already saved. That hold also kept the task from continuing. Expected behavior Recovery works without a person. When the source cannot be verified, the task continues from its last saved version. The unverified files are not applied, but they stay available. A stale hold whose files were already saved settles as recovered. Steps to reproduce 1. Use a native run with a remote workspace whose reusable sandbox lease history includes a lease of another task. 2. Let the run save a checkpoint, write more files, and fail its final save. 3. Let retained-file recovery run, or press Retry. 4. Before this change, the hold is exhausted with `allocation_ownership_ambiguous` and the task stays blocked. Paperclip version or commit Observed on deployed builds that include `630411af53`. Holds saved by the Nov 3–6 releases have this shape. ## What Changed - New `server/src/services/workspace-recovery-fallback.ts`: - `continueFromLastSavedWorkspace` runs when a hold is exhausted by a permanent source refusal: `allocation_ownership_ambiguous`, `source_binding_invalid`, `source_unavailable` or `historical_source_missing` with retry class `service_required` or `use_alternative_strategy`. It applies only to remote workspace sources in the `prepared` state. - Quarantine (secrets omitted under the workspace file policy: `.env`, keys, repository metadata, dependency directories): if the retained root is readable, the worker copies it with the existing read-only capture (no write to the sandbox), converts it to a `.tar`, stores it, and attaches it to the task as `unverified-files-run-<runId>.tar`. A `workspace_recovery_quarantine` operation records it as `verified: false, applied: false`. If the root is not readable, the worker records a closed reason label. - Stop proof: every allocation of the source run must carry a provider stop receipt. A missing receipt is obtained through the same stop-only cleanup as normal recovery (`prepareSandboxStopAndRetain` / `prepareHistoricalSandboxStopVerification`, `retryPendingSandboxTeardown`, `settleStopOnlyCleanup`). A sandbox that another lease holds (`active` / `pending_cleanup`) is never read or stopped from here; the hold waits. - One transaction (lock order: task, coordinator, run, recovery action, workspace) re-checks all facts including the stop receipts, abandons the epoch, resolves the hold with the named outcome `retained_source_unverifiable_continued_from_last_saved`, records an `executionReconciliation` decision with `retainedSourceFallback`, and denies native replacement. A Blocked task belongs to the hold only while the hold's own `workspaceFinalizationBlock` receipt still owns that status version, or, for receipt-less holds saved by older releases, while the block was set by the run's terminal failure (within its finalization window) and no status decision followed. Only then is the task restored to `todo` and a continuation scheduled; a newer block is kept and no continuation starts. The decision carries machine `workspaceRepairEvidence`, which the reconciled admission requires for runs with a restore failure. - Continuation: with no waiting user input, the hold uses `continuationDelivery: "pending"`, so the existing reconciled delivery starts one continuation. Waiting user input continues the task itself (`not_requested`), so there is never a second continuation. - Agent note: the decision's `outcomeEvidence` (part of the continuation's recovery outcomes) says that the run's unsaved changes could not be verified and were not applied, where the attached copy is, that the agent should check what to redo, and that completed external actions must not be repeated. - `settleSiblingRecoveredHold`: an exhausted hold whose run has a verified repair receipt from a different recovery action settles as recovered. It runs for every exhausted hold, including adoptable native sources. A sibling marked recovered whose receipt no longer verifies records a permanent deferral, so discovery does not reselect it. - Deferral: when the fallback cannot settle yet, the hold records `retainedSourceFallbackCheck` (reason, generation, count). Transient reasons (live writer, running operation, missing stop, sandbox in use, pending status effect, lock busy, storage failure) are checked again after 5 minutes, at most 12 times. Permanent reasons (uncertain external action, non-remote source) wait for new input, Retry or a new generation. Storage or database failures after a successful read are retryable and never recorded as "unreadable". - New `server/src/services/workspace-recovery-fallback-discovery.ts`: SQL for pending and due fallbacks. `retainedWorkspaceCandidates` (the production worker's obligations sweep) and `nextWorkspaceRecoveryAt` (its scheduler) include them, so the worker reaches old holds without saved input. - New `server/src/services/remote-workspace-epoch-abandonment.ts` (kept out of `remote-workspaces.ts`, which is near 1,000 lines): authority transition `abandonUnverifiedRemoteWorkspaceEpoch`. It clears the writer and the dirty flag, keeps `snapshotId`, drops `location`, advances the epoch, clears `providerRef` and the migration root, and records the abandoned epoch. The next preparation restores the last save into a new `<workspace>-<epoch>-<lease>` root. - `server/src/services/workspace-recovery.ts`: hooks. An exhausted hold first tries the sibling settlement, then the fallback (under the existing workspace ownership lock). A fresh permanent refusal in an attempt runs the fallback in the same pass, under the same ownership. - `remote-workspace-transport.ts`: export the existing read-only capture. - `packages/shared`: optional `retainedSourceFallback` on `ExecutionReconciliation`. - `doc/execution-semantics.md`: document the fallback. - No new polling or worker: the fallback runs inside the existing retained-workspace recovery pass (`rules/sleep-aware-background-work.mdc`). Safety: - The cross-task lease check (`retiredReusableLeasePredecessors`) is unchanged and stays strict. Unverified files are never applied. - No second executor: the source run, its controller and its finalizer must be stopped. A live writer of the task or workspace, or a running workspace operation, keeps the hold. - No repeated external side effects: pending status effects, non-completed or unknown API receipts, and uncertain tool invocations keep the existing reconciliation path. The continuation keeps the existing API receipt fences. - Never overwrite another run's files: only the exact epoch that the failed run wrote is abandoned, and the old root is never reused. - Bounded and idempotent: a settled hold is never revisited. The quarantine record is reused. A changed generation or revision leaves the hold unchanged. Previous-release story (`rules/upgrade-safe-run-state.mdc`): holds saved by earlier releases carry forward. A hold saved by the Nov 3–6 releases (`systemRecovery` exhausted with `allocation_ownership_ambiguous` / `service_required`, board owner, old admin text) takes the fallback on the next worker pass after deploy (restart sweep, Retry, or a new message). No migration is needed. Refusals that do not qualify keep today's behavior. The only new persisted shapes are additive: `retainedSourceFallback` and `siblingWorkspaceRecovery` on the hold, `remoteWorkspaceAbandonedEpochs` on the workspace, and a `workspace_recovery_quarantine` operation. Earlier releases ignore them. ## Verification - `cd server && npx vitest run src/services/workspace-recovery-fallback.test.ts` — 15 tests: - cross-task hold, saved by the previous release and refused fresh: continues from the checkpoint snapshot, the quarantine `.tar` holds the unverified file, the epoch is abandoned, `getExecutionBlocker` is `null`, the task is `todo`, explicit continuation is not blocked by `saved_work_recovery_failed` or `workspace_repair_required`, one reconciled continuation is delivered, and the next writer restores into a new root while the old root keeps its files; - unreadable root: continues and records the reason; - idempotency: a second pass changes nothing and delivers no second continuation; - waiting user input: no second continuation; - negatives (live writer, pending side effect, uncertain external action, sandbox held by another lease): the hold stays, the authority is unchanged, nothing is attached or delivered, the deferral reason and recheck time are recorded; - an allocation without a stop receipt is stopped (stop-only) before the hold settles; - the production worker (`reconcileRetainedWorkspaces` with `obligationsOnly`) and `nextWorkspaceRecoveryAt` discover and settle an old hold with no saved input; a transient deferral is not revisited until due, then settles; - an old-release hold without a Blocked receipt keeps its status; a current hold with the receipt is restored to `todo`; - stale exhausted hold with a sibling-saved receipt settles as recovered; one whose sibling receipt no longer verifies is recorded and no longer discovered; - a newer Blocked decision is kept and no continuation is delivered, while the file hold settles; - the attached copy omits `.env` and key files. - RED: with `workspace-recovery.ts` and `system-recovery.ts` reverted to master, all tests fail. - Regression suites pass: `workspace-recovery-warm-handoff`, `workspace-recovery-retry-copyback`, `workspace-recovery-preparation-gates`, `workspace-recovery-source`, `task-retry`, `execution-blocker-read` (288 tests), and `workspace-recovery-admission`, `workspace-recovery-preparation*`, `remote-workspaces.integration`, `native-failed-workspace-recovery`, `remote-workspace-transport`, `workspace-restore-repair-route` (683 tests). - `server` typecheck passes. ## Risks - A task now continues without the unverified changes of its failed run. The agent receives a note and the attached copy, so it can redo or re-apply the work. This replaces an indefinite block. - Abandoning an epoch on a workspace shared with a parent task also moves the parent to the last save. This is correct: the unverified changes are not part of the saved lineage. - Clearing the migration root means sessions bound to the old root start fresh. The fallback continuation already forces a fresh session. - The quarantine capture reads a sandbox that can be shared with another task. It writes nothing there, and it verifies the copy against inventories taken before and after. ## Model Used - Provider: Anthropic. Model: Claude Opus 5.5 (`claude-opus-5-5`), with tool use (shell, file edits, read-only browser for API inspection) in Claude Code. ## Checklist - [x] I have included a thinking path that traces from project context to this change - [x] I have specified the model used (with version and capability details) - [x] I have checked ROADMAP.md and confirmed this PR does not duplicate planned core work - [x] I have searched GitHub for duplicate or related PRs and linked them above - [x] I have either (a) linked existing issues with `Fixes: #` / `Closes #` / `Refs #` OR (b) described the issue in-PR following the relevant issue template - [x] I have not referenced internal/instance-local Paperclip issues or links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip` URLs) - [x] My branch name describes the change (e.g. `docs/...`, `fix/...`) and contains no internal Paperclip ticket id or instance-derived details - [x] I have run tests locally and they pass - [x] I have added or updated tests where applicable - [x] I have updated relevant documentation to reflect my changes - [x] I have considered and documented any risks above - [ ] All Paperclip CI gates are green - [ ] Greptile is 5/5 with no open P2s, recommendations, or follow-ups - [x] I will address all Greptile and reviewer comments before requesting merge 🤖 Generated with [Claude Code](https://claude.com/claude-code) --------- Co-authored-by: Claude Opus 5.5 <noreply@anthropic.com>	2026-11-07 18:34:05 -06:00
Nicky Leach	0363ebec70	fix(connectors): stop GitHub access refreshes from advancing agent runtimes (#19902 )	2026-11-07 14:43:39 -08:00
Dotta	eb7c7b083a	Recover Muse verification after contact, restart and access restoration (#19909 ) ## Thinking Path > - Paperclip manages AI agents and their work under company access rules. > - Muse readiness uses a saved connection, receiver contact and an authenticated challenge reply. > - A failed challenge write could leave a saved contact with no later recovery trigger. > - A server restart or restored access must recover that contact under current authority. > - This pull request uses the existing delivery coordinator and saved Muse state for recovery. > - It keeps the normal receiver schedule, authorization checks and real deadlines. > - It lets eligible verification recover and lets idle verification stop work. ## Linked Issues or Issue Description What happened? The first Muse receiver contact could persist while readiness challenge creation failed. The contact then had no durable retry or startup recovery path. Later membership, lifecycle or feature restoration could also leave pending verification without a notice. Expected behavior Retry a temporary failure through the existing worker. Recover pending contact after restart. Recheck the current company, agent, operator, credential and binding generation before issuing a challenge. Stop verification work while it is ineligible or complete. Do not revive revoked credentials. Steps to reproduce 1. Use the normal invitation and OAuth registration, PKCE and token flow. 2. Send one receiver contact and let its normal persistence schedule run. 3. Fail the first readiness challenge operation before it commits. 4. Observe whether the existing worker retries without another contact or a manual Verify action. 5. Restart the App with a new database owner. Check that it creates one usable challenge from the saved contact. Paperclip version or commit The causal baseline test used the unchanged production implementation at `90148317b2a447794ff29a4acae5648ad11a9770` plus its normal fixture. The accepted positive test used `9d383041028776ad8469ac4af3fe14ba6c369425`. The initial published head was `fe518c9b72504daf6374225987f24d45bc7bcf75`. The lease/auth correction was locally qualified at `cfd515a207416097fe8b586277d70c4fd4a679fa`. The current candidate is `6efe722e7eb1e22acd466125c7b4a627611d0273`; its added Cloud actor fixture correction passed the full normal owning program and all 35 tests. Its current normal build, lifecycle owner controls, healthy-wait and restoration measurements are described below. Earlier results below are bound to their stated revisions. Related public changes: Refs #19819 for original-principal authentication. Refs #19750 for the transaction-owned external feature read. These are related foundations, not duplicate fixes. The current Muse title and head-branch searches found no duplicate contact-verification recovery PR. Related maintenance work is #17000 and terminal assignment settlement is #17793. ## What Changed - Add a typed, exact-binding verification notice through the existing Muse delivery queue. - Register the first-contact notice before its durable write in the same transaction. - Recover pending contact from saved state at startup. Retry temporary failures through the existing scheduler. - Recheck current feature, lifecycle, credential and access state after commit. Park unavailable authority without recurring verification scans. - Add narrowly scoped notices to the existing access, lifecycle, configuration, company, budget and settings write owners. - Save a healthy lifecycle verification wait in the existing operation JSONB. Keep generic unresolved-work and error retries unchanged. - Commit authenticated confirmation and its lifecycle recheck in one transaction. Retain a raced recheck under the active lease, and recover saved waits once at startup. - Retain a committed lifecycle recheck while an expired attempt still owns the row, so its late wait cannot park accepted confirmation. Replacement claims keep their existing owner fence and fresh fact read. - Keep the receiver gap, persistence and per-segment contact limits unchanged. - Add real App OAuth, failure, retry, restart, challenge and quiet evidence. Add two normal-route restoration tests. - Document recovery, reconnect requirements and the existing connected-receiver sleep restriction. ## Verification - Causal baseline: the real invitation and OAuth flow saved one contact. The first challenge operation failed. The normal test failed because it observed one verification attempt instead of a retry. No setup or cleanup failure was counted as this regression. - At `9d383041`: normal own Shared/SDK, DB with migration 0441 assets, Runner TypeScript core and surfaces, module boundaries, and all seven normal App programs passed. One new redundant role comparison first failed typecheck; that diagnostic remains recorded and the corrected full App gate passed. - At `9d383041`: all 17 maintenance component tests passed with zero skips. All original deadline, rollback, drain, terminal settlement and startup controls remain. - At `9d383041`: the one normal App case passed. Real OAuth authorized one receiver signal. A retry occurred about 5.01 seconds after the first failure. A new Db/App owner created one challenge, advanced revision 2 to 3, and accepted authenticated confirmation and mailbox ACK. Query instrumentation had an active positive control. All measured query, callback, session and verifier counters stayed equal across the unchanged scheduled 15-second quiet window. Token revocation and old-token/signal rejection passed. - Known App, worker, HTTP and database owners closed without cleanup errors. The tests used bounded local PostgreSQL and HTTP fixtures. They did not call a live Muse model. - Current integrated semantics: the full normal App driver completed all programs. Only a new test callback had two undefined-value diagnostics. An explicit defined-value guard corrected that test. The full 416-root owning program then passed with empty diagnostics. A separate collector incorrectly required an explicit child `noEmit` field; the normal inherited setting was verified without repeating the compiler. The original failures remain recorded. - The first restoration run failed both cases. Permission parking recorded 120 main-pool queries without more verifier calls. The lifecycle counter recorded two denials without their exact scope. These observations remain unexplained at the individual-query/call level. Source separately shows a lifecycle readiness retry every two seconds while the real external reply is absent. - At `fe518c9b`: normal Shared/SDK and DB producers, module policy, all seven full App programs, and all 33 pure diagnostic controls passed. The lifecycle owner file passed all 19 cases, including both confirmation/park orders, rollback, duplicate notices, startup recovery and authority controls. - At `fe518c9b`: the normal OAuth failure/retry/new-Db reconstruction case passed. Its new healthy-wait window measured 15,002 ms with unchanged total activity before genuine confirmation; the existing ready quiet and revocation checks also passed. - At `fe518c9b`: both normal restoration tests passed in Vitest. Ordinary viewer-to-operator restoration and Pause/Resume recovered the same binding, grant and single contact; each committed one challenge and advanced revision 2 to 3. All six parked, restored and revoked/disabled quiet windows measured at least 15 seconds with active positive read controls and unchanged total queries, callbacks, sessions and verifier calls. Both cleanups passed. - The restoration wrapper still recorded failure: it required lifetime lifecycle denial count zero, whereas the measured count was one before the parked quiet window. The reviewed fixture explicitly permits a current-authority denial from an earlier observation and requires no committed challenge before restoration. Precise denial timing relative to Pause was not serialized. The original wrapper failure is retained; no rerun or retrospective explanation of the earlier failures is claimed. - Review exposed an expired-lease race. The added real-store baseline test failed after the late defer restored `waitingForSignal`; no setup or timeout was counted as the regression. On `cfd515a`, the whole lifecycle owner file passed all 20 tests, including that case. The full normal production declaration program (1067 roots), verification program (662), and auth owning program (405) passed; all 1942 declarations remained byte-identical. - The original remote auth-session shard failed three tests because their partial query adapters lacked the new binding query's join/order/limit chain. A fixture-only correction preserved the real notifier and existing authorization assertions. All 12 auth-session tests passed locally. - Complete remote inspection also found 33 failures in the 35-test Cloud actor fixture with the same missing `innerJoin` method and downstream incomplete-auth assertions. Its original full log and exact synthetic Source comparison are retained. At `6efe722e`, the three-line fixture adapter repair passed the complete normal 662-root test program and the whole 35-test file with zero failures or skips. All existing lock, authorization, settings, debounce and unfinished-auth assertions remain. - The earlier healthy/restoration quiet measurements remain bound to `fe518c9b`. Those steady 15-second windows did not exercise a still-owned attempt passing its 120-second lease. The targeted expired-owner regression qualifies that new boundary; it is not a fresh measurement of the earlier windows. - The initial `fe518c9b` remote gates failed the auth fixtures and reported a Greptile 4/5 P1. The aggregate failure reported the underlying shard. Those actual causes were fixed and qualified above. - Current `6efe722e` remote gates completed with 57 successful checks and three explicit skips. The full latest edited Greptile summary is 5/5, explicitly reviews this exact head, and has no new finding. The original P1 thread is resolved. All general, inline and nested review pages were read. - One current-head CI attempt timed out after 30 seconds in the Runner evidence/privacy file, with 6,864 passes and one failure. That file and its transitive inputs are byte-identical to the CI base. A separate local diagnostic preserved every assertion and the original timeout, ran the full normal Runner test project and the entire 41-case file, and passed all 41 with zero skips. Its private bounded timing records measured the target body at 74 ms. The diagnostic was then removed, restoring the exact original test. This is local recovery evidence; the original CI stalled await was not recorded and its cause remains unproven. - One retry of only the failed jobs on the unchanged head passed the Runner support suite and dependent aggregate verification. The complete second attempt and original failure logs are preserved. No test, timeout, privacy guard or product code was weakened. This result does not turn the original timeout into an explained failure or a diagnosed flake. - Full recursive typecheck, full `test:run` and a full release build were not repeated locally. The normal full App programs, focused producers and tests above passed, and the required current-head remote gates passed. Final review is against the exact unchanged head; local quiet remains separate from deployed suspension. Reviewer commands use the normal project entry points: `node server/scripts/typecheck-layers.mjs`, the whole `server/src/services/muse-maintenance.test.ts` file, and both normal App PostgreSQL files. PostgreSQL fixtures require explicit owned fixture/admin URLs and normal migrations before imports. Run the files serially with one worker. The private controller retains exact Source, output, worker and owner-closure receipts. ## Risks - Missing or early producer notices could lose a restoration trigger. Notices stay in the transaction that commits the write. The worker checks current authority after commit. - A stale notice must not grant access. Binding generation, current membership, company, agent and credential checks remain authoritative. Revoked credentials require reconnecting. - The change adds no table, migration, alternate task queue or periodic verification scan. It adds two optional fields to existing lifecycle operation JSONB. Generic pending/error deadlines, setup holds and manual repair remain obligations. - Confirmation can race with an active verification attempt. The park compare-and-set must retain the durable recheck. Startup recovery uses a fixed cutoff and keyset pages; it must not become another recurring scan. Wrong company, stale version, pause and revoked credentials must stay fenced. - The connected receiver still has its documented tenant-sleep restriction. Worker quiet is not proof of deployed suspension or external wake. - The normal challenge reply is sent by an authenticated protocol fixture. Live Muse background replies, cost/usage, full Muse lifecycle and full hosted Dot behavior remain unqualified. Partial Dot profile ACK and unsigned-device cutover stay withheld. - Restoration coverage for the additional company, budget, configuration and feature producers remains a separate qualification obligation. This pull request does not mark the whole hosted area complete. ## Model Used OpenAI `gpt-6.1-sol` authored the implementation and tests with local code and tool use. A GPT-6-based Codex coordinator reviewed the changes and owns integration. Its exact underlying model ID is not exposed. Context window sizes are unavailable. No context size is inferred. ## Checklist - [x] I have included a thinking path that traces from project context to this change - [x] I have specified the model used (with version and capability details) - [x] I have checked ROADMAP.md and confirmed this PR does not duplicate planned core work - [x] I have searched GitHub for duplicate or related PRs and linked them above - [x] I have either (a) linked existing issues with `Fixes: #` / `Closes #` / `Refs #` OR (b) described the issue in-PR following the relevant issue template - [x] I have not referenced internal/instance-local Paperclip issues or links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip` URLs) - [x] My branch name describes the change (e.g. `docs/...`, `fix/...`) and contains no internal Paperclip ticket id or instance-derived details - [x] I have run tests locally and they pass - [x] I have added or updated tests where applicable - [x] I have updated relevant documentation to reflect my changes - [x] I have considered and documented any risks above - [x] All Paperclip CI gates are green - [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups - [x] I will address all Greptile and reviewer comments before requesting merge	2026-11-07 16:41:15 -06:00
DottaandClaude Opus 5.5	adb7633d7b	fix(status-cards): give agents the person's restore route when archiving a card (#19903 ) ## Thinking Path > - Paperclip is the open source app people use to manage AI agents for work > - Status cards are saved summaries of company work. People and agents can archive and restore them. > - A person asked a chat agent to archive a card "to reuse it next quarter". The agent archived it correctly. > - The archive response had no board route, and the PATCH operation had no description. The completion guidance tells agents not to guess routes. > - So the agent told the person to restore the card "by clearing `archived`". That is an API instruction, not a route a person can use. > - This pull request gives single-card responses an `href` to the Status page and documents archive and restore on the PATCH operation. > - The benefit is that an agent can give the person a usable link and a true account of restore, which starts a fresh summary. ## Linked Issues or Issue Description What happened A chat agent archived a status card. Its reply told the person to restore the card by clearing `archived` on the card. It gave no link to the place where a person restores it. Expected behavior The reply links the card on the Status page, where a person can show archived cards and click Restore. It also says that restore starts a fresh summary. Steps to reproduce 1. Enable status cards and create a card as an agent. 2. Ask the CEO agent in chat to archive the card for later reuse. 3. Read the reply. It has no usable restore route, because `PATCH /api/status-cards/{id}` returns no `href` and has no description. ## What Changed - `POST /api/companies/{companyId}/status-cards`, `GET /api/status-cards/{id}` and `PATCH /api/status-cards/{id}` now return `href`, the company-scoped Status page route for the card. - The shared `statusCardSchema` has an optional `href` field. - The `PATCH /api/status-cards/{id}` OpenAPI operation has a description. It says that archive keeps the card and its history, that a person restores it on the Status page with the returned `href`, and that restore starts a fresh full summary. - The create route reads the company issue prefix before it creates the card. A failed link lookup can not delete a card whose compile task is queued. - Regression tests cover the `href` on the archive and get responses, the new PATCH description, and a failed prefix read on create (no card and no task are left). ## Verification - `pnpm exec vitest run server/src/__tests__/status-cards.test.ts server/src/__tests__/openapi-routes.test.ts` (71 tests pass). The new create-route test fails on the first commit and passes on the fix. - End to end: the chat eval `status-cards.archive-card` runs with this change on an eval branch. The result is in the eval report for that case. ## Risks - Low risk. The change adds one optional response field and one description. List responses do not change. The UI ignores the new field. - Each single-card response does one more small company read for the issue prefix. On create, this read occurs before the card exists, so its failure leaves nothing behind. ## Model Used - Anthropic Claude Opus 5.5 (`claude-opus-5-5`), used in Claude Code with tool use and code execution. ## Checklist - [x] I have included a thinking path that traces from project context to this change - [x] I have specified the model used (with version and capability details) - [x] I have checked ROADMAP.md and confirmed this PR does not duplicate planned core work - [x] I have searched GitHub for duplicate or related PRs and linked them above - [x] I have either (a) linked existing issues with `Fixes: #` / `Closes #` / `Refs #` OR (b) described the issue in-PR following the relevant issue template - [x] I have not referenced internal/instance-local Paperclip issues or links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip` URLs) - [x] My branch name describes the change (e.g. `docs/...`, `fix/...`) and contains no internal Paperclip ticket id or instance-derived details - [x] I have run tests locally and they pass - [x] I have added or updated tests where applicable - [x] I have updated relevant documentation to reflect my changes - [x] I have considered and documented any risks above - [ ] All Paperclip CI gates are green - [ ] Greptile is 5/5 with no open P2s, recommendations, or follow-ups - [ ] I will address all Greptile and reviewer comments before requesting merge 🤖 Generated with [Claude Code](https://claude.com/claude-code) --------- Co-authored-by: Claude Opus 5.5 <noreply@anthropic.com>	2026-11-07 16:28:11 -06:00
DottaandClaude Opus 5.5	fc6e1b0346	perf(native): keep local Codex and OpenCode runners warm by default (#19888 ) ## Thinking Path > - Paperclip is the open source app people use to manage AI agents for work. > - When someone messages an agent, the turn must start fast. Time to first token (TTFT) is a first-class metric. > - The Phase 0 baseline (#19846) found that every local turn launches a new runner and loads the provider session again, because `per_turn` is the default lifecycle. That made a follow-up message slower than a new task. > - Warm runners keep the runner and provider session alive between runs. #19874 fixed the defect that broke warm OpenCode follow-ups, and #19879 bounds an idle warm runner whose controller dies. > - This pull request makes warm the default for local Codex and OpenCode agents, and migrates existing agents that only carried the old creation default. > - The benefit: follow-up TTFT p50 drops from 12.0 s to 4.7 s (Codex) and from 21.7 s to 4.2 s (OpenCode), with no new restart-chaos failures. ## Linked Issues or Issue Description Refs #19846 (TTFT baseline), #19852 (startup sub-spans), #19874 (warm completion contract), #19879 (warm reconnect grace). What existing behavior does this improve? The default runner lifecycle for native agents, and how a follow-up message starts. Current behavior Agent creation writes `lifecycleMode: "per_turn"` into every native agent. Every follow-up launches a new runner and restores the provider session: 4.2 s (Codex) and 16.3 s (OpenCode) at p50 before the turn starts. Proposed behavior New native agents store no lifecycle. On a local target, an unset lifecycle resolves to `warm` with the default 5-minute idle window for Codex and OpenCode. Other harnesses, remote targets and managed providers without warm support stay `per_turn`. An explicit choice always wins. Migration 0443 clears the stored creation default from existing agents, except where an edit set "Turn by turn" explicitly. Reason and benefit Measured locally (`doc/plans/2026-11-07-warm-follow-up-ttft.md`). Warm follow-ups are 2.6–5× faster for Codex and OpenCode, and restart recovery latency is equal or lower. ## What Changed - `native-lifecycle.ts`: an unset `agentMode` resolves to warm (5-minute idle window) for local `codex_app_server` and `opencode_server` agents. `runtime-selection.ts` passes `localTarget`. Explicit `per_turn` or `warm` wins. An admitted session keeps its persisted policy. ACPX Claude stays `per_turn`: it relaunches its provider process on every follow-up by design, so warm did not shorten its follow-up (10.7 s warm vs 10.5 s per_turn). - Creation and configuration writes no longer store `lifecycleMode: "per_turn"` for Codex, Claude or OpenCode. This covers `normalizePaperclipRunnerAdapterConfig` (runs on every create and update), `paperclipRunnerTransitionConfig` (switching to the native runner), `agent-runner-selection.ts`, `codex-local` `build-config.ts`, and the simplified new-agent setup (`paperclipRunnerCreationLifecycle` in `@paperclipai/shared`). Grok, Pi and Cursor keep their explicit value. - Agent form: the Runner lifecycle field shows the unset state as "Automatic". "Turn by turn" and "Warm session" remain. - Migration `0443_native_warm_follow_up_default.sql`: clears `lifecycleMode = 'per_turn'` from native Codex, OpenCode and Claude agents unless `agent_config_revisions` shows an edit that set it to `per_turn`. Each migrated agent gets an `agent.updated` activity entry with the old value (`actor_id = migration:native-warm-follow-up-default`). Creation records no revision, so a "Turn by turn" pick made at creation cannot be told apart from the old default. The product owner approved migrating those agents. Claude agents follow the default, which is `per_turn` today. - Restart chaos harness and TTFT driver: `--lifecycle per_turn\|warm\|default` (saved in the wave plan). `default` removes the catalog's pinned lifecycle, so a wave exercises the real default path. - Docs: `doc/DEVELOPING.md` "Runner lifecycle default", and the results in `doc/plans/2026-11-07-warm-follow-up-ttft.md`, which also documents baseline finding 4 (Claude's resumed turn-start gap is ACPX's per-turn process generation, not the provider). ## Verification - `server`: `native-lifecycle.test.ts` (new default cases: local Codex and OpenCode warm, Claude, remote, unknown target, unmeasured harness, managed Claude, admitted per-turn session, explicit choices, non-native adapter), `agent-runner-selection.test.ts`, `runtime-selection.test.ts` (335 pass). - `packages/db`: `native-warm-follow-up-default-migration.test.ts` on embedded Postgres. Default agents are cleared, the explicit edit is kept, other harnesses and legacy adapters are untouched, audit rows are written once, and a rerun is a no-op. Without the explicit-edit filter the test fails. `check:migrations` passes. - `codex-local` `build-config.test.ts` (65), `ui` `config-fields.test.tsx` (40), restart-chaos unit tests (134), `tsc --noEmit` for `server`. - `adapter-utils` `paperclip-runner-lifecycle-default.test.ts`: configuration writes and adapter conversion store no lifecycle for Codex, OpenCode and Claude, keep `per_turn` for the others, and preserve explicit choices. It fails without the fix. - End-to-end default check on this branch (`ttft-baseline.ts --lifecycle default`, codex and opencode, 2 samples): the agents read back with no stored lifecycle, and every follow-up reused the runner and provider session (no `runner.process.launch`). Follow-up TTFT was 3.6–4.8 s. This check found the per-write `per_turn` injection fixed here. - Restart chaos (codex and opencode, A1/B1/B5, K1/K2/K6, seed 4242), 8/8 PASS each with no open signatures: forced warm, forced per_turn, and `--lifecycle default` on this branch (agents created without a lifecycle). - `pnpm verify` selects broader CI (harness config is a global input), so required CI supplies the broad coverage. ## Risks - Behavior change: local Codex and OpenCode agents keep a runner and provider process for up to 5 minutes after a run. Instance sleep waits for that idle window. The process is reaped by the idle timer, by graceful shutdown, or by the #19879 reconnect grace if its controller dies. - Migration: agents whose "Turn by turn" was chosen at creation become Automatic. The activity entry records the old value; choosing "Turn by turn" restores it. - Previous-release story (`rules/upgrade-safe-run-state.mdc`): a task session keeps the lifecycle policy it was admitted with, so sessions saved before this change stay `per_turn`. New sessions get the default. No run, checkpoint or launch state changes shape. > For core feature work, check [`ROADMAP.md`](ROADMAP.md) first and discuss it in `#dev` before opening the PR. Feature PRs that overlap with planned core work may need to be redirected — check the roadmap first. See `CONTRIBUTING.md`. ## Model Used - Anthropic Claude Opus 5.5 (`claude-opus-5-5`) in Claude Code, with tool use (shell, file edit, test execution). ## Checklist - [x] I have included a thinking path that traces from project context to this change - [x] I have specified the model used (with version and capability details) - [x] I have checked ROADMAP.md and confirmed this PR does not duplicate planned core work - [x] I have searched GitHub for duplicate or related PRs and linked them above - [x] I have either (a) linked existing issues with `Fixes: #` / `Closes #` / `Refs #` OR (b) described the issue in-PR following the relevant issue template - [x] I have not referenced internal/instance-local Paperclip issues or links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip` URLs) - [x] My branch name describes the change (e.g. `docs/...`, `fix/...`) and contains no internal Paperclip ticket id or instance-derived details - [x] I have run tests locally and they pass - [x] I have added or updated tests where applicable - [x] I have updated relevant documentation to reflect my changes - [x] I have considered and documented any risks above - [ ] All Paperclip CI gates are green - [ ] Greptile is 5/5 with no open P2s, recommendations, or follow-ups - [x] I will address all Greptile and reviewer comments before requesting merge 🤖 Generated with [Claude Code](https://claude.com/claude-code) --------- Co-authored-by: Claude Opus 5.5 <noreply@anthropic.com>	2026-11-07 14:37:36 -06:00
DottaandClaude Opus 5.5	f439150cb3	fix(recovery): limit the null-host owner fallback to single-host servers and record each use (#19883 ) ## Thinking Path > - Paperclip is the open source app people use to manage AI agents for work > - #19868 and #19871 made restart recovery judge a recorded pid only in the PID space that recorded it > - Rows saved before those host columns existed have no recorded host. They kept the previous local dead-pid proof, so in-flight native runs would not be stranded at upgrade > - On an ephemeral (multi-host) server that fallback is unsafe: the row may have been written on another host > - This pull request limits the fallback to single-host servers, records every use, and gives ephemeral servers a working board action > - The benefit is that single-host upgrades still recover on their own, multi-host servers never accept a cross-host proof, and the next release can remove the fallback with evidence ## Linked Issues or Issue Description Bug description After #19868 and #19871, a `native_run_finalizations` row with `controller_host_hash = null`, or a run with `process_host_hash = null`, still accepted "the pid is dead here" as proof on every server. That includes an ephemeral server, where the row may come from another host. Nothing recorded how often the fallback was used, so it had no safe removal path. Expected behavior - Single-host server: the fallback applies for one release, and each use writes a `legacy_host_unknown_dead_pid_proof` activity-log entry. - Ephemeral server (`PAPERCLIP_EPHEMERAL_SERVER=true`): the row is unprovable, and the board has an action to confirm the previous server stopped. - A mismatched host is always unprovable. Refs #19868, #19871, #19846 ## What Changed - `native-restart-recovery.ts` `evaluateNativeControllerTakeover`: - A coordinator row with `controllerHostHash: null` returns `controller_host_unrecorded` when `ephemeralServerEnabled()` is true. - Otherwise a pid proof from that row carries `legacyHostFallback: true`. - `operator_attested` is accepted as proof (`operator_attested_controller_stopped`). - Receipt-built owners, which have no host key, are unchanged. - New `recordLegacyHostFallbackProof` writes the activity-log entry. It is not a run-log event: run events are progress evidence for restart recovery's crash-loop credit, and the record must not change any recovery decision. It is called from restart recovery, the dead-controller result-lease release, native retirement, and remote warm-session recovery. - New `native-controller-host-recovery.ts`: - `requestNativeControllerStopConfirmation` (board-owned `native_controller_host_unverified` recovery action, idempotent, never displaces another active action). - `confirmNativeControllerStopped`. It verifies the exact recorded controller and stamps `operator_attested` with compare-and-set. It then resolves the action, wakes live-run recovery, and logs `issue.native_controller_stop_confirmed`. - Route `POST /issues/:id/recovery-actions/confirm-controller-stopped`. It is board-only and requires `runtime:confirm_owner_stop`. Generic `restored`/`false_positive` resolution of this cause is refused. A shared `confirmNativeControllerStoppedSchema` validates the body. - UI: `WorkspaceExportRecovery` reuses the "Confirm the previous server stopped" control for this cause, and the generic recovery card hides it. Adds the `issuesApi.confirmControllerStopped` client call. - `recovery/service.ts` orphan reaper: a null `process_host_hash` is judged only when not ephemeral. A successful use records the entry best-effort, after the terminal write. On an ephemeral server the run is left to its existing Stop control. - `ephemeralServerEnabled` moves to a leaf `ephemeral-server-mode.ts` (re-exported by `ephemeral-server-contract.ts`). Importing the contract module from recovery code created an import cycle in the runner child process. - The new route is registered in OpenAPI. - `doc/execution-semantics.md`: documents the host rule and the one-release sunset. ## Verification - `native-restart-recovery.test.ts`: null host on a single-host server is released with the flag. Null host on an ephemeral server is unprovable. A mismatched host is unprovable in both modes. An attested controller is accepted. Receipt owners are unchanged. - New `native-controller-host-recovery.test.ts` (embedded Postgres): - The fallback writes the activity-log entry and no run event. - Ephemeral mode creates exactly one board action. - A wrong run id is refused. - Confirmation stamps the attestation, after which takeover is allowed. The action resolves and the activity is logged. A second confirmation is refused. - `recovery-stale-issue-lock-sweep.test.ts`: on a single-host server a null host is terminalized and records one event. On an ephemeral server it is left alone with no event. The existing audit-failure case still clears the lock. - `WorkspaceExportRecovery.control.test.tsx`: the controller confirmation posts to `confirmControllerStopped` and never to the copyback endpoint. - Locally: these suites plus `remote-warm-session-recovery`, `native-controller-recovery.integration` and `native-startup-cleanup-recovery` (136 passed), and after the CI fixes `native-runner-restart-preparation` and `native-runner-restart-recovery` integration, `openapi-routes` and the suites above (256 passed); the UI recovery suites (52 passed); `node scripts/typecheck-layers.mjs` with no errors in the touched files; `pnpm check:token-gates` clean. ## Risks - Previous-release story: no schema change. Null-host rows saved by earlier releases recover as before on single-host servers, now with an event, and wait for the board on ephemeral servers. The next release removes the fallback; the event count shows whether any rows remain. - On an ephemeral server, a null-host orphaned run process is not reaped automatically. The operator uses Stop. That is the intended "unprovable" outcome. - A board confirmation is an attestation. It applies only to the exact recorded controller (boot id + pid) and only while the host is still unrecorded. ## Model Used - Claude Opus 5.5 (`claude-opus-5-5`), Anthropic, used with tool use and code execution in Claude Code. ## Checklist - [x] I have included a thinking path that traces from project context to this change - [x] I have specified the model used (with version and capability details) - [x] I have checked ROADMAP.md and confirmed this PR does not duplicate planned core work - [x] I have searched GitHub for duplicate or related PRs and linked them above - [x] I have either (a) linked existing issues with `Fixes: #` / `Closes #` / `Refs #` OR (b) described the issue in-PR following the relevant issue template - [x] I have not referenced internal/instance-local Paperclip issues or links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip` URLs) - [x] My branch name describes the change (e.g. `docs/...`, `fix/...`) and contains no internal Paperclip ticket id or instance-derived details - [x] I have run tests locally and they pass - [x] I have added or updated tests where applicable - [x] I have updated relevant documentation to reflect my changes - [x] I have considered and documented any risks above - [ ] All Paperclip CI gates are green - [ ] Greptile is 5/5 with no open P2s, recommendations, or follow-ups - [x] I will address all Greptile and reviewer comments before requesting merge 🤖 Generated with [Claude Code](https://claude.com/claude-code) --------- Co-authored-by: Claude Opus 5.5 <noreply@anthropic.com>	2026-11-07 13:25:47 -06:00
Héctor Villarreal Ortega	576d6f6430	fix(ssh-restore): reset the local index to HEAD after importing remote git history (#16644 ) ## Thinking Path > - Paperclip is the open source app people use to manage AI agents for work > - Agents can run on a remote SSH environment. After the run, Paperclip restores the workspace and imports the remote git history. > - The import moves the checked-out branch with `git update-ref`. `update-ref` does not change the index. > - The index then still matches the old tip. `git status` in the workspace shows the new files of the run as staged deletions. > - An operator who commits in that workspace can remove the work of the agent by mistake. > - The sandbox restore already resets the index after the import (#8595). The SSH restore does not. > - This pull request calls the same `resetLocalGitIndexToHead` after the SSH restore. > - The benefit is a clean `git status` after each SSH run, the same as after a sandbox run. ## Linked Issues or Issue Description Refs #8595 (the same fix for the sandbox restore). Refs #15662, Refs #16440 (other open changes to the same SSH restore code). What happened? After a remote SSH run imported a commit, `git status` in the local workspace showed every new file of that commit as a staged deletion, and every changed file as a staged modification. The files on disk were correct. Expected behavior `git status` is clean after the import, because the working tree and HEAD are the commit of the run. Steps to reproduce 1. Use an opencode_local agent on an SSH environment with a git_worktree project workspace. 2. Let the agent add a file and commit on the remote copy. 3. After the run, run `git status` in the local worktree. The new file shows as `D` in the index. Paperclip version or commit paperclipai 2026.916.1 (also present on master `272316808`) ## What Changed - `packages/adapter-utils/src/ssh.ts`: the SSH restore merge gets an `afterApply` that calls `resetLocalGitIndexToHead`, when remote git history was imported. The sandbox restore does the same since #8595. - `packages/adapter-utils/src/ssh-fixture.test.ts`: "round-trips remote git commits through the managed runtime restore path" now also checks that nothing is staged after the restore. ## Verification - I ran the SSH fixture tests in a container with `sshd` (they skip on a host without it): `ssh-fixture.test.ts` and `git-workspace-sync.test.ts`, 87 tests pass. - Without the change, the managed runtime restore test leaves `M tracked.txt` staged (`git diff --cached`) and `git status` shows `MM tracked.txt`. With the change, nothing is staged and `git status` shows ` M tracked.txt`, which is the uncommitted remote edit. - `npx tsc --noEmit -p packages/adapter-utils` passes. - I found the bug on a real SSH environment (opencode_local in a runner container, paperclipai 2026.916.1). ## Risks Low risk. It reuses the index reset that the sandbox restore already uses. It runs only when remote git history was imported. Work staged on the host before the run is reset to HEAD, the same as in the sandbox path. ## Model Used Claude Opus 5.5 (claude-opus-5-5), Anthropic, used through Claude Code with tool use (shell, file edits). Human-reviewed. ## Checklist - [x] I have included a thinking path that traces from project context to this change - [x] I have specified the model used (with version and capability details) - [x] I have checked ROADMAP.md and confirmed this PR does not duplicate planned core work - [x] I have searched GitHub for duplicate or related PRs and linked them above - [x] I have either (a) linked existing issues with `Fixes: #` / `Closes #` / `Refs #` OR (b) described the issue in-PR following the relevant issue template - [x] I have not referenced internal/instance-local Paperclip issues or links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip` URLs) - [x] My branch name describes the change (e.g. `docs/...`, `fix/...`) and contains no internal Paperclip ticket id or instance-derived details - [x] I have run tests locally and they pass - [x] I have added or updated tests where applicable - [ ] I have updated relevant documentation to reflect my changes - [x] I have considered and documented any risks above - [ ] All Paperclip CI gates are green - [ ] Greptile is 5/5 with no open P2s, recommendations, or follow-ups - [ ] I will address all Greptile and reviewer comments before requesting merge	2026-11-07 13:15:16 -06:00
DottaandClaude Opus 5.5	0189fedffc	fix(native): bound an idle warm local runner whose controller died (#19879 ) ## Thinking Path > - Paperclip is the open source app people use to manage AI agents for work. > - A warm runner (`lifecycleMode: warm`) keeps runnerd alive between runs so a follow-up turn starts fast. The follow-up default flip (next PR) makes warm the default for local Codex and OpenCode agents. > - The controller owns a warm runner's idle window. Runnerd ignores the idle timeout itself. > - A graceful controller shutdown suspends idle warm sessions. A controller that dies (SIGKILL, crash) does not. Local runners launch with no process reconnect grace, so the idle runner kept running until its 1-hour connection lease ran out, owned by nobody. > - This pull request gives warm local runners the 7-minute reconnect grace that remote runners already use. > - The benefit: idle runners are reaped by proof within a bounded time, never left orphaned, before warm becomes the default. ## Linked Issues or Issue Description Refs #19874 (warm completion contract), #19846 (TTFT baseline), #19852. What existing behavior does this improve? Ownership of an idle warm local runner after its controller dies. Current behavior `runnerProcessReconnectGraceMs` is `undefined` for local targets, so runnerd launches without `--reconnect-grace-ms`. An idle warm runner whose controller was killed stays alive until its connection lease (one hour) expires. The restart-chaos harness cannot show this: its K1 kills the controller's whole process tree, runner included. Proposed behavior `localRunnerProcessReconnectGraceMs(policy)` returns the remote grace (7 minutes) for a warm policy and `undefined` for per-turn. After the grace, runnerd records `transport_reconnect_grace_exceeded`, stops its provider, keeps durable state and exits. The next run resumes cold. Reason and benefit The restart plan requires idle runners to be reaped by proof, never orphaned. Seven minutes is far longer than a controller restart (13–20 s locally) and the long-outage fault holds (3–5 minutes), so a live turn still reattaches. ## What Changed - `native-runner-recovery-contract.ts`: `localRunnerProcessReconnectGraceMs`. - `native-session-executor.ts`: the local runnerd transport passes it as `runnerProcessReconnectGraceMs`. Remote targets keep `null` (lease-owned). - `runnerd-warm-idle-orphan.test.ts` (new): real runnerd and fake Codex. An idle warm runner, after its turn completed, whose controller detaches. - `doc/DEVELOPING.md`: the grace and its bound. ## Verification - `pnpm --filter @paperclipai/paperclip-runner exec vitest run src/live/runnerd-warm-idle-orphan.test.ts`: with a process grace, the idle runner exits with `transport_reconnect_grace_exceeded` and the next transport resumes the same provider session cold. With no grace (`null`, today's local launch), the runner is still alive after the controller left. - `cd server && npx vitest run src/services/native-runtime/native-runner-recovery-contract.test.ts`: warm gets the remote grace; per-turn keeps none; the grace outlasts a controller restart and a long outage. - `tsc --noEmit` passes for `server` and `packages/paperclip-runner`. - Local restart measurement with warm runners (K1/K2, codex, claude, opencode, n = 3 each): every interrupted run recovered, with recovery latency equal or lower than per-turn. The chaos waves with this change are in the default-flip PR. ## Risks - A warm local runner whose controller stays down for more than 7 minutes exits. A turn in progress then resumes through `resume_dead_runner`, the same path as a controller crash that kills the runner. Remote runners already behave this way. - Previous-release story (`rules/upgrade-safe-run-state.mdc`): no persisted state changes. A warm runner launched by the previous release keeps the launch arguments it started with (no grace) until it exits. > For core feature work, check [`ROADMAP.md`](ROADMAP.md) first and discuss it in `#dev` before opening the PR. Feature PRs that overlap with planned core work may need to be redirected — check the roadmap first. See `CONTRIBUTING.md`. ## Model Used - Anthropic Claude Opus 5.5 (`claude-opus-5-5`) in Claude Code, with tool use (shell, file edit, test execution). ## Checklist - [x] I have included a thinking path that traces from project context to this change - [x] I have specified the model used (with version and capability details) - [x] I have checked ROADMAP.md and confirmed this PR does not duplicate planned core work - [x] I have searched GitHub for duplicate or related PRs and linked them above - [x] I have either (a) linked existing issues with `Fixes: #` / `Closes #` / `Refs #` OR (b) described the issue in-PR following the relevant issue template - [x] I have not referenced internal/instance-local Paperclip issues or links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip` URLs) - [x] My branch name describes the change (e.g. `docs/...`, `fix/...`) and contains no internal Paperclip ticket id or instance-derived details - [x] I have run tests locally and they pass - [x] I have added or updated tests where applicable - [x] I have updated relevant documentation to reflect my changes - [x] I have considered and documented any risks above - [ ] All Paperclip CI gates are green - [ ] Greptile is 5/5 with no open P2s, recommendations, or follow-ups - [x] I will address all Greptile and reviewer comments before requesting merge 🤖 Generated with [Claude Code](https://claude.com/claude-code) --------- Co-authored-by: Claude Opus 5.5 <noreply@anthropic.com>	2026-11-07 13:11:18 -06:00
Can H. Tartanoglu	410aa6d1b4	test(runner): resolve provider fixture signals through PATH (#14476 ) ## Thinking Path > - Paperclip is the open source app people use to manage AI agents for work. > - Its native runner tests verify exact provider shutdown and recovery. > - Four fixture call sites invoke `/bin/kill` directly. > - NixOS supplies `kill` through PATH, so those tests fail before checking process state. > - This pull request resolves `kill` through PATH, as the neighboring runner tests already do. > - The same stop, probe, and resume assertions can run on non-FHS hosts. ## Linked Issues or Issue Description What happened? Four Codex provider tests fail with `No such file or directory` on NixOS. Each failure comes from a test-owned `/bin/kill` invocation. The executable is installed on PATH. Expected behavior Tests should probe and signal their disposable provider processes with the installed `kill` command. Steps to reproduce On a NixOS host with `kill` on PATH and no `/bin/kill`, run the `codex_provider` Rust integration target. Three `durable_stop_*` cases and `structured_question_round_trips_through_the_normalized_backend` fail. All four failures were reproduced separately on unmodified `e9debd3eac328e6abe87ab89e9ff40ee2bb56b73`. Related: these failures also blocked the broader local qualification of #14474. This fixture fix has no dependency on that runtime change. ## What Changed - Replace four test-only `/bin/kill` executable paths with `kill`. - Retain every signal, PID/process-group operand, assertion, and unwind cleanup. - Match existing PATH lookup in this file and `tests/process_supervisor.rs`. ## Verification Rebased onto master `820c458465` (single commit `ad1fb1043`). - `cd packages/paperclip-runner/runner && cargo test -p paperclip-runner-core --test codex_provider --locked -j4 -- --test-threads=2`: 94 passed, 0 failed, 2 ignored (subprocess helper entries that their parent tests run). The four tests that used `/bin/kill` pass on a host without `/bin/kill`. - No production code or documentation changes. - Hosted CI: `General tests (workspaces-b)` timed out in `packages/db/src/backup-lib.test.ts` and `e2e shard (1/8)` hit `ERR_STREAM_UNABLE_TO_PIPE`. Neither area is touched by this test-only diff. Master pushes currently run the "CI profile skipped" workflow, so there is no master run of those jobs to compare against. ## Risks Low risk. Tests require a working `kill` on their test PATH. Fixture PIDs and arguments stay unchanged. ## Model Used - Anthropic Claude Sonnet 5.5 (`claude-sonnet-5-5`) through Claude Code with tool use and code execution, for the rebase and verification. Original change: OpenAI `gpt-6-astra` through OpenCode. ## Checklist - [x] I have included a thinking path that traces from project context to this change - [x] I have specified the model used (with version and capability details) - [x] I have checked ROADMAP.md and confirmed this PR does not duplicate planned core work - [x] I have searched GitHub for duplicate or related PRs and linked them above - [x] I have either (a) linked existing issues with `Fixes: #` / `Closes #` / `Refs #` OR (b) described the issue in-PR following the relevant issue template - [x] I have not referenced internal/instance-local Paperclip issues or links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip` URLs) - [x] My branch name describes the change (e.g. `docs/...`, `fix/...`) and contains no internal Paperclip ticket id or instance-derived details - [x] I have run tests locally and they pass - [x] I have added or updated tests where applicable - [x] I have updated relevant documentation to reflect my changes - [x] I have considered and documented any risks above - [ ] All Paperclip CI gates are green - [ ] Greptile is 5/5 with no open P2s, recommendations, or follow-ups - [x] I will address all Greptile and reviewer comments before requesting merge	2026-11-07 13:02:29 -06:00
DottaandClaude Opus 5.5	dcaada5f59	fix(native): carry each warm run's own completion contract (#19874 ) ## Thinking Path > - Paperclip is the open source app people use to manage AI agents for work. > - A warm runner (`lifecycleMode: warm`) keeps runnerd and the provider process alive between runs, so a follow-up message can start fast. > - Each run has its own completion contract. The revision changes with each follow-up, and the agent must name that revision when it finishes. > - On a warm attachment the transport rebuilt the `run.attach` payload from its constructor options. Those options belong to the first run. Every later run kept the first run's contract. > - The OpenCode proxy checks the finish claim locally against that stale contract. Every warm OpenCode follow-up was refused ("Semantic result completion contract revision does not match"), and the agent looped until the run timed out. > - This pull request carries each run's own contract into the warm attachment, and lets runnerd adopt it without a cold provider resume. > - The benefit: warm follow-ups finish correctly, and they keep the live provider process, which is the reason to be warm. ## Linked Issues or Issue Description Refs #19852 (startup sub-spans), #19846 (TTFT baseline). What existing behavior does this improve? Warm cross-run attachment for native Codex and OpenCode agents. Current behavior In a local measurement wave with `lifecycleMode: warm`, 4 of 4 OpenCode follow-ups looped for 8+ minutes. Each finish call was refused with "Semantic result completion contract revision does not match". The saved `runAttachTemplate` after the attachment still had revision `1`, while the follow-up turn named revision `2`. Codex hid the defect because its finish claim goes through the controller's tool path, which uses the current input. Proposed behavior The attachment carries the attaching run's contract. Runnerd updates the contract in place for Codex and OpenCode and keeps the provider process. The OpenCode proxy receives the current contract with the run identity on `turn/start`. Reason and benefit Warm follow-ups are the largest TTFT lever in the baseline. A correctness-only fix (cold-resume the provider when the contract changes) would make every warm follow-up relaunch Codex or OpenCode, because the revision changes on every follow-up. ## What Changed - `attachRun` carries `completionContract` through `NativeSession`, the harness backend, the Codex harness session and the runnerd transport. `executeNativeSession` passes the current input's contract. The transport uses it instead of its first-run `resumeCompletionContract`. - Runnerd (`codex_provider.rs`, `attach_run_in_place`): a changed contract no longer forces a cold resume for `codex` and `opencode`. Codex app-server never receives the contract, and the OpenCode proxy now receives it per turn. Other providers keep the cold-resume boundary. A changed tool set still forces it. - Runnerd sends `paperclipCompletionContract` with each OpenCode `turn/start`, next to the existing `paperclipRunId`. - The OpenCode proxy passes that contract to `attachRun` when the run changes. `OpenCodeHarnessSession.attachRun` replaces its envelope's contract and validates it. ## Verification - `src/live/runnerd-codex-transport-warm-attachment.test.ts` (new case): real runnerd and fake Codex. After a warm attachment with a new contract, the saved `runAttachTemplate` has the new revision and the Codex pid is unchanged. - `src/cli/opencode-proxy-input.test.ts`: the real proxy bundle serves a warm second run with revision `proxy-v2`. The second `paperclip/runResult` is produced and names `proxy-v2`. Without the fix the finish call is refused. - Each test fails without its part of the fix: the proxy test without the proxy change; the transport test without the transport change (stale saved revision); and, with `PAPERCLIP_ATTACH_TRANSITION_RUNNER` pointed at a runnerd built without the `codex_provider.rs` change, the Codex pid changes. - `cargo test -p paperclip-runner-core --lib warm` (11 tests), `native-session-runtime.test.ts` (232), the OpenCode driver, backend and warm-attachment suites, and `tsc --noEmit` for the runner package pass. ## Risks - Previous-release story (`rules/upgrade-safe-run-state.mdc`): no persisted shape changes. Saved `runAttachTemplate` values carry forward, and the next attachment writes the current contract. A new runnerd with an old OpenCode proxy behaves as today: the proxy ignores the new parameter and keeps the stale contract. An old runnerd sends no parameter, so a new proxy keeps its launch contract. - In-place adoption widens the warm-retention path for Codex and OpenCode to changed contracts. The idle, accounting and pending-work checks still apply first. > For core feature work, check [`ROADMAP.md`](ROADMAP.md) first and discuss it in `#dev` before opening the PR. Feature PRs that overlap with planned core work may need to be redirected — check the roadmap first. See `CONTRIBUTING.md`. ## Model Used - Anthropic Claude Opus 5.5 (`claude-opus-5-5`) in Claude Code, with tool use (shell, file edit, test execution). ## Checklist - [x] I have included a thinking path that traces from project context to this change - [x] I have specified the model used (with version and capability details) - [x] I have checked ROADMAP.md and confirmed this PR does not duplicate planned core work - [x] I have searched GitHub for duplicate or related PRs and linked them above - [x] I have either (a) linked existing issues with `Fixes: #` / `Closes #` / `Refs #` OR (b) described the issue in-PR following the relevant issue template - [x] I have not referenced internal/instance-local Paperclip issues or links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip` URLs) - [x] My branch name describes the change (e.g. `docs/...`, `fix/...`) and contains no internal Paperclip ticket id or instance-derived details - [x] I have run tests locally and they pass - [x] I have added or updated tests where applicable - [x] I have updated relevant documentation to reflect my changes - [x] I have considered and documented any risks above - [ ] All Paperclip CI gates are green - [ ] Greptile is 5/5 with no open P2s, recommendations, or follow-ups - [x] I will address all Greptile and reviewer comments before requesting merge 🤖 Generated with [Claude Code](https://claude.com/claude-code) --------- Co-authored-by: Claude Opus 5.5 <noreply@anthropic.com>	2026-11-07 12:40:51 -06:00
DottaandClaude Opus 5.5	5a20fca9f7	fix(recovery): judge an orphaned run's pid only in the PID space that recorded it (#19871 ) ## Thinking Path > - Paperclip is the open source app people use to manage AI agents for work > - The orphan reaper (`terminalizeOrphanedRunningRun`) ends a `running` run whose recorded process is gone > - It judged "gone" with `kill(pid, 0)` on the local host, wherever the process actually ran: another host, another PID namespace, or a sandbox > - So a run whose process is alive elsewhere could be terminalized while it still works > - #19868 fixed the same gap for native coordinator takeover and the runtime-control sweep. This pull request finishes finding 2 for the reaper > - The benefit is that a dead local pid never proves an owner on another host is gone ## Linked Issues or Issue Description Bug description The Phase 0 ownership inventory (finding 2) names the orphan reaper `terminalizeOrphanedRunningRun` (`recovery/service.ts`) as a proof that accepts "the pid is dead here" for a process anywhere. `heartbeat_runs` recorded `process_pid` with no PID space, and a sandbox pid could collide with a local one. Steps to reproduce 1. A run records `process_pid` on host A, or in a sandbox. 2. On host B, that pid number is not alive. 3. B's stale-lock sweep terminalizes the run as `orphaned_running_run`. Expected behavior The process-death authority applies only in the PID space that recorded the pid. Issue-terminal authority is unchanged. Refs #19846, follows #19868 ## What Changed - Migration `0442`: add nullable `heartbeat_runs.process_host_hash`. - `heartbeat/run-lifecycle.ts` `persistHeartbeatRunProcessMetadata`, the one writer of `process_pid`, stores `currentProcessSpaceHash()` for a local pid and `"remote"` for a sandbox pid. - `recovery/service.ts`: the process-death authority runs only when `process_host_hash` is null (rows saved before this column, for one release) or `sameProcessSpace` matches. - Tests: the reaper leaves a dead pid alone for another host, a sandbox, and an unreadable space, and terminalizes it in this space. The writer stamps local and remote pids. ## Verification - `npx vitest run src/__tests__/recovery-stale-issue-lock-sweep.test.ts`: 46 passed. - Red before the fix: with the old `recovery/service.ts`, the three cross-space cases fail (the run is terminalized). Green after. - `pnpm db:generate` produced `0442_low_salo.sql` (one `ADD COLUMN`), and the snapshot set was pruned to five. `pnpm --filter @paperclipai/db check:migrations` passed. Server `tsc --noEmit` shows no errors in the changed files. ## Risks - Previous-release story: runs saved with `process_host_hash = null` keep the previous local proof for this release. That matches #19868, because stranding in-flight runs at upgrade would be a restart failure. New rows are strict. - A run whose process really lived on another host now stays `running` until issue-terminal authority, its controller lease, or another owner settles it. - No new I/O before `turn.start`. The hash is computed at module load, and the stamp rides the existing process-metadata update. ## Model Used - Claude Opus 5.5 (`claude-opus-5-5`), Anthropic, used with tool use and code execution in Claude Code. ## Checklist - [x] I have included a thinking path that traces from project context to this change - [x] I have specified the model used (with version and capability details) - [x] I have checked ROADMAP.md and confirmed this PR does not duplicate planned core work - [x] I have searched GitHub for duplicate or related PRs and linked them above - [x] I have either (a) linked existing issues with `Fixes: #` / `Closes #` / `Refs #` OR (b) described the issue in-PR following the relevant issue template - [x] I have not referenced internal/instance-local Paperclip issues or links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip` URLs) - [x] My branch name describes the change (e.g. `docs/...`, `fix/...`) and contains no internal Paperclip ticket id or instance-derived details - [x] I have run tests locally and they pass - [x] I have added or updated tests where applicable - [x] I have updated relevant documentation to reflect my changes - [x] I have considered and documented any risks above - [ ] All Paperclip CI gates are green - [ ] Greptile is 5/5 with no open P2s, recommendations, or follow-ups - [x] I will address all Greptile and reviewer comments before requesting merge 🤖 Generated with [Claude Code](https://claude.com/claude-code) --------- Co-authored-by: Claude Opus 5.5 <noreply@anthropic.com>	2026-11-07 12:22:15 -06:00
DottaandClaude Opus 5.5	68db7ed9e3	fix(recovery): never accept a dead local pid as proof for an owner on another host (#19868 ) ## Thinking Path > - Paperclip is the open source app people use to manage AI agents for work > - After a restart, recovery decides that an in-progress record's owner is gone and takes it over > - Two of those proofs use `kill(pid, 0)` on the local host. A pid that is dead here says nothing about a process on another host or in another PID namespace > - So a controller or runtime-control owner that is still alive elsewhere can be taken over while it still runs > - This pull request records the owner's PID space (the existing `controller-process-identity` host hash) and judges a pid only in that same space > - The benefit is that a different host is never proof. Those records follow their existing lease or TTL instead ## Linked Issues or Issue Description Bug description The Phase 0 ownership inventory (finding 2) found three proofs that accept "the pid is dead here" as proof for an owner on another host: `evaluateNativeControllerTakeover` (`native_run_finalizations` has no host column), the runtime-control sweep (`workspace-operations.ts`), and the orphan reaper `terminalizeOrphanedRunningRun`. Only `controllerProcessExited` checked the host. Steps to reproduce 1. Run two control-plane processes on different hosts, or in different PID namespaces, against one database. 2. Let host A own a native finalization lease or a runtime-control operation. 3. On host B, run restart recovery. If A's pid number is not alive on B, B takes over the live owner. Expected behavior An owner whose PID space differs from this process's, or cannot be read, is unprovable. Its record waits for its lease, fence, or TTL. Refs #19846 ## What Changed - Migration `0441`: add nullable `native_run_finalizations.controller_host_hash`. - `controller-process-identity.ts`: export `currentProcessSpaceHash()` and `sameProcessSpace()`. An unreadable space is stored as `"unknown"`, which never matches. - `native-restart-recovery.ts`: `currentNativeControllerIdentity` carries `hostHash`, which both coordinator claim writes (`native-restart-recovery.ts`, `native-session-executor.ts`) store. `evaluateNativeControllerTakeover` returns `controller_host_unprovable` before any pid probe when the recorded space is not this one. `native-dead-controller-result-lease.ts` selects the column. - `workspace-operations.ts`: runtime-control owner stamps record `hostHash`. `ownerProcessProvenGone` requires the same PID space (EPERM = alive), otherwise the existing staleness TTL applies. - Not in this PR: the orphan reaper `terminalizeOrphanedRunningRun`. `heartbeat_runs` has no host for `process_pid`, and its writers are spread across legacy and native paths. It follows as a separate PR with its own column. ## Verification - `npx vitest run src/services/native-runtime/native-restart-recovery.test.ts src/__tests__/workspace-runtime-control-recovery.test.ts`: 55 passed. New cases cover another host and an unreadable space (dead and recycled pid) for takeover, plus another host, unreadable space, and legacy stamp for the sweep. The sweep cases also confirm that the TTL still reclaims after the heartbeat lapses. - Red before the fix: the 5 new cases fail on the old code. Green after. - `native-controller-recovery.integration.test.ts`, `native-failed-run-owner-release.test.ts`, `native-startup-cleanup-recovery.test.ts`: 71 passed. - `pnpm db:generate` produced `0441_lucky_chameleon.sql` (one `ADD COLUMN`) and pruned to five snapshots. `pnpm --filter @paperclipai/db check:migrations` passed. Server `tsc --noEmit` shows no errors in the changed files. ## Risks - Previous-release story: `native_run_finalizations` rows saved before this column have `controller_host_hash = null`. They keep the previous local dead-pid proof for this release. Making them unprovable would leave every native run in flight at the upgrade in `awaiting_evidence` with no TTL, because local takeovers have no lease fallback. Rows written by this release onward are strict. Runtime-control stamps without `hostHash` are strict now, because that path has a staleness TTL. - Owners built from other receipts (workspace finalization owner, workspace stop proof) pass no host and keep the previous behavior. Track 2's shared `OwnerStamp` should absorb them. - A new row on a host that really moved (redeploy onto a new machine) waits for its lease or an operator instead of being taken over by pid. That is the intended "different host is never proof" rule. - No new I/O before `turn.start`. The hash is computed once at module load. ## Model Used - Claude Opus 5.5 (`claude-opus-5-5`), Anthropic, used with tool use and code execution in Claude Code. ## Checklist - [x] I have included a thinking path that traces from project context to this change - [x] I have specified the model used (with version and capability details) - [x] I have checked ROADMAP.md and confirmed this PR does not duplicate planned core work - [x] I have searched GitHub for duplicate or related PRs and linked them above - [x] I have either (a) linked existing issues with `Fixes: #` / `Closes #` / `Refs #` OR (b) described the issue in-PR following the relevant issue template - [x] I have not referenced internal/instance-local Paperclip issues or links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip` URLs) - [x] My branch name describes the change (e.g. `docs/...`, `fix/...`) and contains no internal Paperclip ticket id or instance-derived details - [x] I have run tests locally and they pass - [x] I have added or updated tests where applicable - [x] I have updated relevant documentation to reflect my changes - [x] I have considered and documented any risks above - [ ] All Paperclip CI gates are green - [ ] Greptile is 5/5 with no open P2s, recommendations, or follow-ups - [x] I will address all Greptile and reviewer comments before requesting merge 🤖 Generated with [Claude Code](https://claude.com/claude-code) Co-authored-by: Claude Opus 5.5 <noreply@anthropic.com>	2026-11-07 11:14:48 -06:00
DottaandClaude Opus 5.5	a9ac2e2039	feat(native): split local runner startup into stage, launch and session-load spans (#19852 ) ## Thinking Path > - Paperclip is the open source app people use to manage AI agents for work. > - When a person messages an agent, the agent must start its turn fast. Time to first token (TTFT) and agent boot are first-class metrics. > - The Phase 0 baseline (#19846) found that local runner startup costs 1.6–17 s at p50 and up to 50 s at p95. It is the largest part of TTFT. > - The run log records that startup as one span (`runner.session.bootstrap` or `runner.session.resume`). We cannot see if the time goes to staging, to the `paperclip-runnerd` process launch, or to the provider session load. > - This pull request splits local runner startup into three sub-spans in the run log. > - The benefit: the follow-up work to cut follow-up-turn TTFT can measure each step before and after. ## Linked Issues or Issue Description Refs #19846 (TTFT baseline, finding 1 and gap "No sub-spans exist inside local runner startup"). Refs #19838. What existing behavior does this improve? The run-log performance spans for local native runner startup. Current behavior The local path records one `runner.session.bootstrap` or `runner.session.resume` span that covers runtime staging, the runner process launch and the provider handshake together. The remote path already records `runner.runtime.stage` and `runner.process.launch`; the local path does not. Proposed behavior The local path records three sequential child spans of `runner.session.startup`: `runner.runtime.stage`, `runner.process.launch` and `provider.session.load`. Reason and benefit The TTFT work needs to know which step dominates before it changes the runner lifecycle. Without these spans, a change to warm runner reuse cannot show which cost it removes. ## What Changed - `RunnerdCodexTransport` has a new optional `onStartupStep` callback. `#start` and `#resume` time three milestones and call it synchronously. A failing callback never changes startup. A nested startup (exact adoption from `thread/start`) keeps the outer clock. - `runner.runtime.stage`: launch preparation before the runner process exists. - `runner.process.launch`: spawn until runnerd accepts the run (`run.prepare`, or the recovery attachment on resume). An adopted live runner records no launch. This keeps the existing meaning in `summarizeStartupReuse`: a launch span means a fresh runner. - `provider.session.load`: `session.open` (or the recovery probe) until the provider identity is confirmed. - `recordNativeRunnerStartupStep` (`native-run-trace.ts`) records each step as a `run.performance.span` row with `mode` and `target: "local"`. It uses `trace.defer`, so the run-log write never delays `turn.start`. - The native executor passes the callback only for a local target. Remote launchers keep their own spans, so there are no duplicates. - `redaction.ts`: allowlist `runner.process.launch` and `provider.session.load` as native span names. - `doc/run-log-events.md`: new section "Local runner startup sub-steps". Data path (AGENTS.md §5.7): run log only, plus Observability spans when an operator sets an OTLP endpoint. The attributes (`mode`, `target`, `outcome`) are already in the closed span-attribute allowlist. No Telemetry change. ## Verification - `pnpm --filter @paperclipai/paperclip-runner exec vitest run src/live/runnerd-codex-transport-startup-steps.test.ts`: a real runnerd and the fake Codex fixture. Bootstrap and a cold resume each report stage, launch and session load in order, with `ok` outcomes and no overlap. A throwing sink does not change startup. - `cd server && npx vitest run src/services/native-runtime/native-run-trace.test.ts src/__tests__/redaction.test.ts`: the rows have the correct parent, offsets, durations and failed level. A stalled run-log sink does not block the caller. The rows settle before `task.provider_session.measured`. The names survive redaction. - The existing `runnerd-codex-transport*` suites pass (412 tests). Under host load (load average 16–27), the first full run had 7 timing failures in suites that do not set the callback. Each failing file passed when I ran it again alone. `runnerd-codex-transport-settlement` passed 3/3 for the failing case alone. - `tsc --noEmit` passes for `packages/paperclip-runner` and `server`. ## Risks - Low risk. Without `onStartupStep`, the transport behaves as before: the clock is not created and each milestone call is an optional-chain no-op. - More run-log rows: three per local runner startup. - The step boundaries are controller-side observations. `runner.process.launch` includes the runnerd authentication and the `run.prepare` acknowledgement, not only the OS spawn. > For core feature work, check [`ROADMAP.md`](ROADMAP.md) first and discuss it in `#dev` before opening the PR. Feature PRs that overlap with planned core work may need to be redirected — check the roadmap first. See `CONTRIBUTING.md`. ## Model Used - Anthropic Claude Opus 5.5 (`claude-opus-5-5`) in Claude Code, with tool use (shell, file edit, test execution). ## Checklist - [x] I have included a thinking path that traces from project context to this change - [x] I have specified the model used (with version and capability details) - [x] I have checked ROADMAP.md and confirmed this PR does not duplicate planned core work - [x] I have searched GitHub for duplicate or related PRs and linked them above - [x] I have either (a) linked existing issues with `Fixes: #` / `Closes #` / `Refs #` OR (b) described the issue in-PR following the relevant issue template - [x] I have not referenced internal/instance-local Paperclip issues or links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip` URLs) - [x] My branch name describes the change (e.g. `docs/...`, `fix/...`) and contains no internal Paperclip ticket id or instance-derived details - [x] I have run tests locally and they pass - [x] I have added or updated tests where applicable - [x] I have updated relevant documentation to reflect my changes - [x] I have considered and documented any risks above - [ ] All Paperclip CI gates are green - [ ] Greptile is 5/5 with no open P2s, recommendations, or follow-ups - [x] I will address all Greptile and reviewer comments before requesting merge 🤖 Generated with [Claude Code](https://claude.com/claude-code) --------- Co-authored-by: Claude Opus 5.5 <noreply@anthropic.com>	2026-11-07 10:57:31 -06:00
DottaandClaude Opus 5.5	e7936fb1ad	fix(heartbeat): gate process-loss retries on the shared failure budget (#19856 ) ## Thinking Path > - Paperclip is the open source app people use to manage AI agents for work > - When a server restart loses a run's process, the orphan reaper decides whether to retry the run > - `doc/execution-semantics.md` says process loss uses the shared durable failure retry counter, and `enqueueProcessLossRetry` already schedules against that budget > - The reaper still guards on `processLossRetryCount < 1`, but nothing has written that column since the move to the shared budget, so the guard does nothing > - So an exhausted chain still says "retrying once" and skips the interaction continuation path, and a legacy row with a non-zero counter is refused a retry it is owed > - This pull request replaces the dead guard with `failedRunRetryBudgetSpent`, the budget that the retry actually spends > - The benefit is one restart budget, read and written in one place, with honest run messages ## Linked Issues or Issue Description Bug description The Phase 0 ownership inventory (finding 5) found that `processLossRetryCount` has no writer and that its only reader is the reaper guard at `heartbeat/recovery.ts:2675`. The guard always passes for new rows. For rows written by earlier releases, it refuses a retry even when the shared failure budget has room. Steps to reproduce 1. Seed a legacy run that a restart stopped before adapter dispatch. Spend its whole failure retry budget (`executionRetryAccounting.failureRetries = max`). 2. Run `reapOrphanedRuns()`. 3. The run fails with "Process lost -- server may have restarted; retrying once", but no retry is scheduled. Expected behavior An exhausted budget gives no promise of a retry. A legacy counter value does not block a retry that the shared budget allows. Refs #19846 ## What Changed - `heartbeat/recovery.ts`: `shouldRetry` now checks `!failedRunRetryBudgetSpent(run)` instead of `processLossRetryCount < 1`. When the budget is spent, the reaper falls through to `scheduleInteractionContinuationInfrastructureRetryIfEligible`, which is what the old guard intended. - `packages/db/src/schema/heartbeat_runs.ts`: a comment marks `process_loss_retry_count` as legacy. There is no schema or migration change. - Tests: the three cases that used `processLossRetryCount: 1` to mean "retry already spent" now spend the real failure budget. Two new cases cover a legacy counter (a retry is still scheduled) and a spent budget (no "retrying once", `retryEligible: false`, no retry run). ## Verification - `npx vitest run src/__tests__/heartbeat-process-recovery.test.ts -t "process-loss\|failure budget\|bypass unknown process outcomes\|immediate terminal-run cleanup\|paused-tree work\|restart stopped before adapter dispatch\|reached adapter dispatch"`: 7 passed. - Red before the fix: with the old `recovery.ts`, both new cases fail. Green after. - Server `tsc --noEmit` shows no errors in the changed files. - The full `heartbeat-process-recovery.test.ts` file (419 cases) stalled locally at 0% CPU after about 15 minutes. That run was on a worktree whose package builds were stale at first. I ran the focused subset instead, and required CI runs the full file. ## Risks - Low risk. The retry decision now follows the same budget that `enqueueProcessLossRetry` already enforced. A run with budget left behaves as before. - Previous-release story: rows saved with `process_loss_retry_count > 0` are no longer refused for that reason alone. The shared failure budget, which earlier releases also wrote, bounds them. The column stays, so earlier-release readers (`queue.ts` startup resume) keep working. ## Model Used - Claude Opus 5.5 (`claude-opus-5-5`), Anthropic, used with tool use and code execution in Claude Code. ## Checklist - [x] I have included a thinking path that traces from project context to this change - [x] I have specified the model used (with version and capability details) - [x] I have checked ROADMAP.md and confirmed this PR does not duplicate planned core work - [x] I have searched GitHub for duplicate or related PRs and linked them above - [x] I have either (a) linked existing issues with `Fixes: #` / `Closes #` / `Refs #` OR (b) described the issue in-PR following the relevant issue template - [x] I have not referenced internal/instance-local Paperclip issues or links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip` URLs) - [x] My branch name describes the change (e.g. `docs/...`, `fix/...`) and contains no internal Paperclip ticket id or instance-derived details - [x] I have run tests locally and they pass - [x] I have added or updated tests where applicable - [x] I have updated relevant documentation to reflect my changes - [x] I have considered and documented any risks above - [ ] All Paperclip CI gates are green - [ ] Greptile is 5/5 with no open P2s, recommendations, or follow-ups - [x] I will address all Greptile and reviewer comments before requesting merge 🤖 Generated with [Claude Code](https://claude.com/claude-code) Co-authored-by: Claude Opus 5.5 <noreply@anthropic.com>	2026-11-07 10:37:39 -06:00
Dotta Paperclip Paperclip	377bc87df1	feat(connectors): show and select personal AI account defaults (#19845 ) Show a crown on each saved personal AI provider default. Add a provider-specific menu action to other eligible accounts. Share saved-state queries, block duplicate writes, and keep the saved crown until a write succeeds. Keep account details available for accessible grants. Show session lookup errors with Retry. Resolve list permissions once per request and index account lookups. Add UI and API regression coverage and account documentation. Co-Authored-By: Paperclip <noreply@paperclip.ing> Co-Authored-By: Paperclip <Paperclip-Paperclip@users.noreply.github.com>	2026-11-07 10:26:08 -06:00
DottaandClaude Opus 5.5	b5b972ceb1	fix(runner): stop provider tool processes that leave the owned process group (#19727 ) ## Thinking Path > - Paperclip is the open source app people use to manage AI agents for work > - The local runner (`paperclip-runnerd`) supervises each provider process, such as the ACPX sidecar for Claude, in its own process group > - Run teardown stops that process group, and nothing else > - Claude Code starts each Bash tool command in a new session (`setsid`). A command such as `nohup ./bench.sh & echo $!` leaves a job in that session, and the wrapper exits at once. The job is then a child of init and outside the owned group > - In a restart chaos storm, a run failed after a restart resume. Its tool job kept running beside the task's next run, in the same workspace, for more than four minutes > - This pull request makes the supervisor record every process that its provider starts, including processes that leave the group, and stop them all before teardown reports success > - The benefit is that a run's tools cannot outlive the run and cause duplicate side effects in the next run ## Linked Issues or Issue Description What happened? A restart chaos storm ran a local ACPX Claude task. After a restart resume, the agent ran `nohup ./bench.sh <nonce> > log 2>&1 & echo "started pid $!"` and then ended its turn without a result. The run failed with `native_finalization_missing`. The runner tore down the sidecar group, and the guardian killed the provider group. `bench.sh` was in the session that Claude Code made for the tool (pgid and sid = the exited wrapper, ppid = 1). It was never signalled. It kept forking `sleep 1` while the task's next run started and finished in the same workspace. Steps to reproduce 1. Run a local ACPX Claude task whose agent runs a Bash tool command such as `nohup ./bench.sh x > log 2>&1 & echo $!`. 2. End the run (any outcome, including failure after a restart resume). 3. Run `ps -axo pid,ppid,pgid,command \| grep bench.sh`. The job is still running with ppid 1. Agent adapter(s) involved Claude Code (local ACPX). The gap is in the shared supervisor, so any provider whose tools leave the group is affected. Root cause `SupervisedProcess` (`packages/paperclip-runner/runner/crates/runner-core/src/process_supervisor.rs`) spawns with `process_group(0)` and stops only that group in `terminate_group`, `terminate_group_immediately`, `wait` and `Drop`. Its own comment said that a caller that must exclude escaped or re-parented descendants needs a separate lifetime fence. No caller had one. The ACPX sidecar transport (`acpx_sidecar_transport.rs`, `shutdown` and `poison`) and the ACPX provider guardian (`installation-integrity.ts`, which kills only its own group) therefore left every `setsid` tool job behind. The failure path after the resume was not special: the same gap applies to every teardown. Expected behavior When a run ends for any reason, every process that its provider or tools started stops, and teardown proves that they are gone. Identity comes from PID, group, session and start time, never from a command name. ## What Changed - Add the `paperclip-process-table` crate. It reads PID, parent, process group and start time for every process (libproc on macOS, `/proc` on Linux). `runner-core` forbids unsafe code, so the two checked libproc calls live in this small crate. - Add `process_lineage.rs` to `runner-core`. A sampler thread (every 50 ms) records each descendant of the supervised process by PID and start time. It also records each group and session that a descendant leads, with the leader's start time. A process belongs to the lineage when its parent belongs, or when it is in a recorded group or session and started no earlier than its leader. Groups and sessions that the supervised process only inherited (runnerd's session) are never recorded. A recorded ID whose PID now names a different process is dropped. - `SupervisedProcess` samples the lineage just before it signals, and after the leader is reaped it stops every live member: TERM, then KILL after the shutdown grace. It fails with an error until it proves that no member is alive (grace plus 5 s). This applies to `terminate_group`, `terminate_group_immediately`, `wait` and `Drop`. - If the lineage sampler cannot start, the supervisor stops the process it just started and reports the failure, so a provider never runs without tool cleanup. - Table reads and state updates happen under one lock, so an older read cannot erase members that a newer read recorded. - The process table reports processes that exist but cannot be read. A recorded member that cannot be read stays unresolved, and teardown fails until its exit is proven. - The Runner workspace now has two members. `scripts/runner-release-crate-cache.mjs` and `scripts/runner-debug-crate-cache.mjs` cache and mark current the process-table lib unit with the Runner crate (otherwise Cargo rebuilds the Runner crate after every restore). The debug contract accepts only this library-only member and still refuses any other workspace change. The workflow cache path lists and the debug clean step are updated to match. - `terminate_group_immediately` now accepts `EPERM` from the group signal when the leader has already exited. macOS returns `EPERM` for a group whose only member is the unreaped leader. The lineage pass then proves that no other member remains. ## Verification - `cargo test -p paperclip-runner-core --lib -- process_lineage tool_job immediate_group_fence` (macOS, local). - New real-process tests in `process_supervisor.rs`: a supervised shell starts a wrapper with `setsid` (Perl `POSIX::setsid`), the wrapper runs `nohup <loop> &`, writes the job PID and exits. The test asserts that the job is outside the owned group and re-parented, then calls `terminate_group`, `terminate_group_immediately` or drops the process, and asserts that the job is gone when the call returns. - Red: with the tracker disabled, all three fail with `tool job <pid> outlived its provider`. - Green: all three pass. - Unit tests in `process_lineage.rs` cover a re-parented job, a job that left its group but stayed in the recorded session, a session made after the first sighting, PID reuse, and no claim through the supervisor's inherited session. - `node --test scripts/__tests__/runner-release-crate-cache.test.mjs scripts/__tests__/runner-debug-crate-cache.test.mjs` (new case: the process-table library is cached with the crate, and any other member still needs review). - `cargo test -p paperclip-process-table` (includes an exited process reported as gone), and `cargo test -p paperclip-runner-core --lib` (570 passed). `acpx_provider_backend::tests::unconfirmed_suspension_state_becomes_recoverable_only_after_cleanup_and_suspend` fails sometimes under full-suite load. It fails at the same rate with the tracker disabled, so it is a flake that already existed. - Sampler cost: one table read takes about 0.4 ms for 1,200 processes on macOS (about 0.8% of one core for each supervised process). - The restart-chaos replay (`--replay w-20261107T023921-s7106/t67`) did not run. The local session was not permitted to load provider credentials. It is not proven against a live Claude run. ## Risks - Teardown now stops all the processes that a provider started, also intentional background jobs. This is the intended contract: nothing outlives the run. - A wrapper that lives less than one sample (50 ms) and orphans a job before the sampler sees it is not recorded. Claude Code's wrapper sources a shell snapshot and lives for seconds. On Linux, a child-subreaper would close this gap. That is not in this change. - When `runnerd` itself is killed with SIGKILL, this code does not run. The provider guardian still kills its own group, but escaped tool sessions are not stopped in that case. - Teardown can return a new error when it cannot prove the lineage stopped. Callers already handle `terminate_group` errors as provider shutdown failures. - The server does not yet gate the next run on the tool lineage of the prior run directly. It relies on the runner finishing its teardown before the runner exits. ## Model Used - Claude Opus 5.5 (`claude-opus-5-5`), Anthropic, with tool use and code execution in Claude Code. ## Checklist - [x] I have included a thinking path that traces from project context to this change - [x] I have specified the model used (with version and capability details) - [x] I have checked ROADMAP.md and confirmed this PR does not duplicate planned core work - [x] I have searched GitHub for duplicate or related PRs and linked them above - [x] I have either (a) linked existing issues with `Fixes: #` / `Closes #` / `Refs #` OR (b) described the issue in-PR following the relevant issue template - [x] I have not referenced internal/instance-local Paperclip issues or links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip` URLs) - [x] My branch name describes the change (e.g. `docs/...`, `fix/...`) and contains no internal Paperclip ticket id or instance-derived details - [x] I have run tests locally and they pass - [x] I have added or updated tests where applicable - [x] I have updated relevant documentation to reflect my changes - [x] I have considered and documented any risks above - [ ] All Paperclip CI gates are green - [ ] Greptile is 5/5 with no open P2s, recommendations, or follow-ups - [x] I will address all Greptile and reviewer comments before requesting merge 🤖 Generated with [Claude Code](https://claude.com/claude-code) --------- Co-authored-by: Claude Opus 5.5 <noreply@anthropic.com>	2026-11-07 08:24:41 -06:00
DottaandClaude Opus 5.5	b2af45f0f1	fix(runner): let OpenAI API-key Codex agents generate images with their existing key (#19654 ) ## Thinking Path > - Paperclip is the open source app people use to manage AI agents for work. > - New users often connect a Codex agent with an OpenAI API key during onboarding. > - A user asked such an agent for a logo. The agent said that the built-in image generator was not available and that its fallback needed a separate API key. It then drew an SVG by hand. > - #19516 removed `--disable image_generation`. That change is correct, but it does not reach this path. The pinned Codex 0.160.0 shows its `image_gen` tool only when Codex signs in with ChatGPT. The check is `image_generation_available` in `codex-rs/core/src/tools/spec_plan.rs`. An API key never gets the tool. > - The runner keeps the provider key out of the agent's shell on purpose, so the skill's `scripts/image_gen.py` fallback cannot run. > - This pull request adds a Paperclip `generate_image` tool. The server makes the image with the agent's existing OpenAI key. The key never goes to the agent process or the shell. > - The benefit is that API-key Codex agents can make images with no second key. The spend goes to the agent's budget and the budget can stop it. ## Linked Issues or Issue Description Refs #19516 What happened? An agent connected through onboarding with an OpenAI API key (Codex harness, `gpt-5.6-sol`) could not generate images. The agent said: "The image skill's built-in generator isn't available in this run, and its fallback would require a separate API key." It then drew an SVG instead. Steps to reproduce 1. Create a company with a Codex agent that uses an OpenAI API key. 2. Ask the agent for a raster image, for example a logo PNG. 3. The agent reports that image generation is not available. It does not make the image. Expected behavior The agent makes the image with the OpenAI key that already powers it. Root cause The agent ran on the native runner's Codex app-server path, with `auth.json = {"OPENAI_API_KEY": ...}`. Codex 0.160.0 removes `image_gen.imagegen` from the model's tools unless `current_auth_uses_codex_backend()` is true. That function is true only for a ChatGPT sign-in. I proved this with the real pinned binary. I gave it the runner's isolated launch arguments and the API-key auth file, and pointed it at a local Responses endpoint. The first model request offers only `exec`, `wait`, `request_user_input` and the collaboration tools. #19516's test checked only `codex features list`, so it could not see this gate. ## What Changed - New `server/src/services/native-runtime/generate-image-tool.ts`: - The tool schema and definition. - `imageGenerationBindingForRun`. It applies only to native Codex runs on a direct OpenAI `api_key` connection with no router selection. - The OpenAI Images API call (`gpt-image-2`, `b64_json`, PNG check, 180 s timeout). The reply is read as a stream with a byte cap before it is parsed. A decoded image larger than 20 MiB is refused. - A reviewed rate card for `gpt-image-2`: text input $5, image input $8 and image output $30 per 1M tokens, from developers.openai.com/api/docs/pricing, retrieved 2026-11-06. - A create-only, symlink-confined local write. - `paperclip-runner-tool-authority.ts`: - Adds the `imageGeneration` binding. - Advertises the tool only for standard mode with a workspace. A remote target must also have an installer. Dot, Muse, Grok and native review do not get the tool. - Adds the `#generateImage` handler. Before any spend, it checks again: the run and task, budget authority, `issue:mutate`, case handoff, and the connection. - Stores a claim-before-spend per-call receipt in `resultJson.imageToolReceipts`. A retry or recovery replays the receipt and does not pay again. - Saves a `charged` receipt (usage, price, request ID and charge time) as soon as OpenAI returns. A failed save, failed accounting write or crash can then still settle the spend. A retry or recovery records the cost once and never buys again. - Records one `cost_events` row through `createCostEventInTransaction`. The row is `metered_api` with `costStatus: "estimated"`, and the budget is evaluated. The row is recorded even if saving fails. - Checks the task's project budget, as well as the company and agent budgets, before spending. - Writes content-free `runner.image_generate` activity entries: started, completed, failed and unconfirmed. - `ai-connections.ts`: adds `selectImageGeneration`. It checks again that the connection is an active, healthy OpenAI `api_key` connection with no custom routing. It also checks the responsible user's membership, the grant audience and the agent or company installation. These are the same rules that runtime selection uses. - `native-session-executor.ts`: gets the binding from the run's admitted `contextSnapshot.aiConnection`. The value comes only from the server, never from tool input. - `native-session-resume.ts`: the native tool contract changes from `v18` to `v19` and now lists `generate_image`. A persisted provider thread cannot add tools when it resumes, so older threads must rotate. - `doc/runner-api-tools.md`: a new section about image generation for OpenAI API-key Codex agents. - #19516: kept, not reverted. Its changes have no effect on the API-key path. They are still correct for Codex agents that sign in with ChatGPT, because `image_gen` works there and saves to `CODEX_HOME/generated_images`. Those agents need the read grant that #19516 added. On the API-key path, the new tool replaces the built-in tool. The tool's description tells the agent to use it instead of `image_gen` or `scripts/image_gen.py`. ## Verification Red on `master` (`e482f0f632`). Behavioural red with the first version of the new test: ``` FAIL src/services/native-runtime/generate-image-tool.test.ts > generate_image for OpenAI API-key Codex agents (N-12) > lets an API-key Codex agent make an image with its existing OpenAI key, saved in its workspace and billed AssertionError: expected [ 'connections_search', …(51) ] to include 'generate_image' ❯ src/services/native-runtime/generate-image-tool.test.ts:78:60 Tests 1 failed \| 3 passed (4) ``` The final test file on master's source also fails. The reason is that the module does not exist: `Cannot find module './generate-image-tool.js'`. Real pinned Codex binary. The new test is `packages/paperclip-runner/src/drivers/codex/codex-api-key-image-tools.test.ts`. It uses the runner's isolated launch, the API-key `auth.json` and a local Responses endpoint. It shows that the model gets no `image_gen`, `imagegen` or `image_generation` tool, and that a server-advertised `generate_image` tool does reach the model: ``` Test Files 1 passed (1) Tests 1 passed (1) ``` Green after the fix: `server/src/services/native-runtime/generate-image-tool.test.ts` uses embedded PostgreSQL and a stubbed OpenAI fetch. ``` Test Files 1 passed (1) Tests 11 passed (11) ``` The 11 tests cover these behaviours: - Main path. The tool is advertised. The request goes to `api.openai.com/v1/images/generations` with the existing key. The PNG is written to the workspace. The key does not appear in the result or in activity. One `cost_events` row is written: 50 text tokens and 1000 output tokens, which is $0.03025, estimated, from the rate card. A retry and `recover()` replay the receipt with no second fetch and no second cost row. - No binding: the tool is not offered and `execute` refuses. - Budget hard-stop. The stop pauses the agent, so the call is refused before any fetch and no file is written. - Bad grant: the call is refused before any fetch. - Project budget stop. The task's project is paused by its budget, so the call is refused before any fetch. - Charge settlement. A crash left a `charged` receipt. The retry and `recover()` record the cost once, report the image path and do not buy another image. - Oversized reply. The read stops before the body is parsed. - Save failure. The spend is still recorded. A same-call retry does not pay again and reports the failure. - Binding gate. Only Codex on a direct OpenAI API key gets the binding. A subscription, ACPX, OpenRouter or a routed connection does not. - Rate card math. - Provider errors. The error text does not contain the key, and non-PNG data is rejected. Neighbouring suites: - `src/drivers/codex` in the runner package: 24 files, 350 tests passed. - Server: `paperclip-runner-tool-authority.test.ts`, `native-session-resume.test.ts`, `fast-responses.test.ts`, `ai-connection-session.test.ts` and the new suite. 157 of 158 passed. - The one failure is `native-session-resume.test.ts › archives a damaged prior epoch … with real runnerd` (ENOENT on `authority-epochs`). It fails the same way on unmodified `master` in this local environment, so this change did not cause it. - `tsc --noEmit -p server/tsconfig.json`: clean. - `pnpm verify` exits 2 (broad). Required CI supplies the broad coverage. ## Risks - New security surface: this needs maintainer sign-off. The server now sends the agent's OpenAI API key to `api.openai.com` on the agent's request. The tool is limited in these ways: - The key stays in the server. - Each call checks run, task, budget, mutation and connection authority again. - The destination name comes from the server and must match `^[a-z0-9-]+-[0-9a-f]{8}\.png$`. The write is create-only and confined to the workspace root. On macOS it uses `O_NOFOLLOW_ANY`. On Linux it uses a `/proc` descriptor walk. - Spend. Each call costs money. The tool description tells the agent to make only what the task needs. The cost is an estimate from a rate card (`costStatus: "estimated"`), not an invoice. The rate card applies the image-output rate to all output tokens, so the estimate errs on the high side. - Checkpoint rotation. The tool-contract bump from v18 to v19 makes existing native provider threads start fresh once at their next turn. This is what the contract requires when the tool surface changes. - Pricing drift. If OpenAI changes `gpt-image-2` prices, the rate card must be updated. ## Model Used - Claude Opus 5.5 (`claude-opus-5-5`), Anthropic, used through Claude Code with tool use (shell, file edits, sub-agents) and extended reasoning. ## Checklist - [x] I have included a thinking path that traces from project context to this change - [x] I have specified the model used (with version and capability details) - [x] I have checked ROADMAP.md and confirmed this PR does not duplicate planned core work - [x] I have searched GitHub for duplicate or related PRs and linked them above - [x] I have either (a) linked existing issues with `Fixes: #` / `Closes #` / `Refs #` OR (b) described the issue in-PR following the relevant issue template - [x] I have not referenced internal/instance-local Paperclip issues or links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip` URLs) - [x] My branch name describes the change (e.g. `docs/...`, `fix/...`) and contains no internal Paperclip ticket id or instance-derived details - [x] I have run tests locally and they pass - [x] I have added or updated tests where applicable - [x] I have updated relevant documentation to reflect my changes - [x] I have considered and documented any risks above - [ ] All Paperclip CI gates are green - [ ] Greptile is 5/5 with no open P2s, recommendations, or follow-ups - [x] I will address all Greptile and reviewer comments before requesting merge 🤖 Generated with [Claude Code](https://claude.com/claude-code) --------- Co-authored-by: Claude Opus 5.5 <noreply@anthropic.com>	2026-11-07 07:48:39 -06:00
DottaandClaude Opus 5.5	5eac099fbb	fix(agents): batch independent follow-up questions into one card (#19634 ) ## Thinking Path > - Paperclip is the open source app people use to manage AI agents for work. > - Agents ask users for input with the `request_human_input` tool or the `ask_user_questions` interaction. Paperclip shows each call as one question card. > - In an onboarding walk, a Codex execution agent asked five independent questions (name, menu and prices, contact, style, output). It posted five cards, one after the other. Each card came 20-60 s after the previous answer. > - The tool description said: "For one question at a time, ask only the next unanswered question and wait for its real answer." Agents read this as a rule. The paperclip skill showed only a one-question example and did not tell agents to batch. > - No server cap exists. A question set accepts up to 64 questions. > - This pull request changes the guidance. Agents now ask independent inputs together in one card. They use a follow-up card only when a question depends on an earlier answer. One-at-a-time stays available when the user asks for it. > - The benefit is fewer waits for the user: one card and one agent turn instead of five. ## Linked Issues or Issue Description What happened? An execution agent asked a user five independent follow-up questions in five separate question cards. Each card appeared only after the user answered the previous card and the agent finished another turn (20-60 s each). Expected behavior When an agent needs several independent inputs, it asks them together in one multi-question card. The onboarding interview already does this ("1 of 4" pager). Steps to reproduce 1. Complete onboarding on the Codex API path and hand off a task such as "Create printable cake menu and logo". 2. Watch the execution agent's first turns. 3. See five sequential single-question cards. Paperclip version or commit master at `4938a930d6` (local dev server). Agent adapter(s) involved Codex (gpt-5.6-sol). The guidance is shared by all adapters that use the Runner `request_human_input` tool or the `paperclip` skill. ## What Changed - `packages/paperclip-runner/src/protocol-actions/request-human-input.ts`: replace the ambiguous "For one question at a time…" sentence. The new text tells agents to ask independent inputs together in one questions card. They use a follow-up card only when it depends on an earlier answer. It keeps one-at-a-time for when the user asks for it. - `skills/paperclip/SKILL.md` and `skills/paperclip/references/api-reference.md`: add the same batching rule to the human-input sections. - `packages/mcp-server/src/tools.ts`: add the batching hint to the `paperclipAskUserQuestions` tool description. - Regenerated runner contracts (`semantic-tool-contracts.json`, `protocol/manifest.json`, `native-execution-seeded.json`) and updated the legacy MCP alias semantics in `spec/capability/mcp-tool-map.yaml`. - New tests: `core-contracts.test.ts` (tool description) and `paperclip-skill-utils.test.ts` (skill and API reference). ## Verification Red on master (tests added, source unchanged): ``` packages/paperclip-runner: npx vitest run src/protocol-actions/core-contracts.test.ts -t batch × tells agents to batch independent questions into one card instead of asking them one by one AssertionError: expected 'Create a durable human question or ap…' not to contain 'For one question at a time' Tests 1 failed \| 20 skipped (21) npx vitest run server/src/__tests__/paperclip-skill-utils.test.ts -t batch × tells agents to batch independent human-input questions into one card AssertionError: expected ' For an open answer, use a text field…' to contain 'ask them together in one card' Tests 1 failed \| 21 skipped (22) ``` Green after the fix: ``` packages/paperclip-runner: npx vitest run src/protocol-actions src/drivers/runner-tool-bridge.claude-schema.test.ts Test Files 4 passed (4) Tests 46 passed (46) npx vitest run server/src/__tests__/paperclip-skill-utils.test.ts Tests 22 passed (22) npx vitest run server/src/services/native-runtime/paperclip-runner-tool-authority.test.ts Tests 41 passed (41) node scripts/generate-semantic-contracts.mjs --check / generate-capability-contract --check / generate-semantic-action-catalog --check / generate-replay-goldens --check: current ``` `packages/mcp-server` has one failure ("allows create issue requests to omit status…"). It also fails on master without this change, so it is not related. This is a guidance change. The automated check proves that the guidance the agent receives tells it to batch. I did not run a live-model eval. ## Risks - Low risk. The change is text only: tool descriptions and skill docs. No schema, API, or storage change. - An agent could put a dependent question into the same card. The text tells agents to use a follow-up card for dependent questions. ## Model Used - Claude Opus 5.5 (`claude-opus-5-5`) in Claude Code, with tool use and code execution. ## Checklist - [x] I have included a thinking path that traces from project context to this change - [x] I have specified the model used (with version and capability details) - [x] I have checked ROADMAP.md and confirmed this PR does not duplicate planned core work - [x] I have searched GitHub for duplicate or related PRs and linked them above - [x] I have either (a) linked existing issues with `Fixes: #` / `Closes #` / `Refs #` OR (b) described the issue in-PR following the relevant issue template - [x] I have not referenced internal/instance-local Paperclip issues or links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip` URLs) - [x] My branch name describes the change (e.g. `docs/...`, `fix/...`) and contains no internal Paperclip ticket id or instance-derived details - [x] I have run tests locally and they pass - [x] I have added or updated tests where applicable - [x] I have updated relevant documentation to reflect my changes - [x] I have considered and documented any risks above - [ ] All Paperclip CI gates are green - [ ] Greptile is 5/5 with no open P2s, recommendations, or follow-ups - [x] I will address all Greptile and reviewer comments before requesting merge 🤖 Generated with [Claude Code](https://claude.com/claude-code) --------- Co-authored-by: Claude Opus 5.5 <noreply@anthropic.com>	2026-11-07 07:48:28 -06:00
greegorij Grzegorz Golaś Devin Foley Paperclip	5a92d53f7d	fix(adapter-utils): handle closed child stdin safely (#14057 ) Handle closed child stdin without losing the child result. Keep each child stdin error handler scoped to that child. Expected EPIPE and stream-destroyed failures no longer crash the host. The child close event remains the source of its exit result. Verification: 2,024 tests passed and 12 live/platform cases skipped across 87 complete adapter-utils suites. The final 140-test server-utils suite passed. The regression reproduces the EPIPE crash on unchanged master. Final qualification: all applicable CI passed and exact-head Greptile Apex scored 5/5 with no unresolved findings. Co-Authored-By: Grzegorz Golaś <193330749+greegorij@users.noreply.github.com> Co-Authored-By: Devin Foley <devinfoley@users.noreply.github.com> Co-Authored-By: Paperclip <noreply@paperclip.ing>	2026-11-07 03:01:03 -08:00
DottaandClaude Opus 5.5	2468b3f907	fix(native): tell a restart continuation that earlier processes may be gone (#19804 ) ## Thinking Path > - Paperclip is the open source app people use to manage AI agents for work > - After a control-plane restart loses a turn, the native runtime sends a same-conversation continuation (#19501, #19699, #19771) > - A restart can also kill shell or background processes that earlier turns started > - In three restart storms, the continuation agent could not inspect its killed `bench.sh` and set the task to blocked > - The continuation prompt told the agent not to "blindly rerun an action whose outcome is unknown", so the agent did not re-run the command > - This pull request tells the agent that earlier processes may be gone, and to check the workspace outputs and re-run a command whose expected output is missing > - The benefit is that a task can finish after a restart instead of blocking on a process that no longer exists ## Linked Issues or Issue Description Refs #19501, #19699, #19771 What happened? Restart chaos workload B5 (Codex and Claude) failed this way three times: storm 6b t14, s7111 t16 and storm 10 t12. The agent started `bench.sh` in the background. A restart killed it. The restart continuation agent tried to find its tool session and got "process inspection is denied". It then blocked the task. The comment read: "Blocked by the Paperclip runtime restart: the benchmark session is unavailable…". It added that it "cannot verify whether the original run is still active or recover its output, so I have not rerun it". Expected behavior The agent knows it is in a resumed session after a restart. It checks the workspace for the command's outputs. If the expected output is missing, it re-runs the command and finishes the task. Root cause `packages/paperclip-runner/src/native-session-runtime.ts`, `restartContinuation`: the prompt did not say that processes from earlier turns may be gone. It told the agent to inspect each unfinished command's "current state" and not to "blindly rerun an action whose outcome is unknown". With the process gone, the agent could not inspect it, so it blocked. ## What Changed - The restart continuation prompt now says: - This is a resumed session after a Paperclip control-plane restart. - Shell commands and background processes from earlier turns may no longer be running, and their tool sessions may be gone. Do not block only because one cannot be found or inspected. - Check the workspace for the outputs or artifacts the command should have produced. If the expected output is present, use it. If the expected output is missing, re-run the command. - Do not repeat completed work. Before repeating an action with external effects (a push, a message, a deployment), check whether it already took effect. If you cannot tell, report the blocker. - The prompt does not say that re-running is always safe. Process teardown (#19727) has not merged. - `doc/execution-semantics.md`: one additive sentence. ## Verification - `native-session-runtime.test.ts`: the three restart continuation tests (Codex, ACPX, OpenCode) now check the new guidance. They were red before the prompt change and are green after it. - Guard: "uses the admitted session cwd in the task envelope" now checks that fresh turns and ordinary resumed turns do not contain the restart guidance. - `npx vitest run src/native-session-runtime.test.ts src/drivers/codex/ src/live/runnerd-restart-continuation.test.ts` in `packages/paperclip-runner`: 603 passed. - `tsc -p tsconfig.json` and `tsc -p tsconfig.test.json` for `packages/paperclip-runner` are clean. - Not run: a live restart-chaos replay with a real model. ## Risks - Low. This changes only the prompt text of the restart continuation. Ordinary turns do not change. - An agent may now re-run a command whose earlier run had partial side effects. The prompt asks it to check external effects first, and to re-run only when the expected output is missing. ## Model Used - Claude Opus 5.5 (`claude-opus-5-5`), Anthropic, through Claude Code with tool use (shell, file edits, code execution). ## Checklist - [x] I have included a thinking path that traces from project context to this change - [x] I have specified the model used (with version and capability details) - [x] I have checked ROADMAP.md and confirmed this PR does not duplicate planned core work - [x] I have searched GitHub for duplicate or related PRs and linked them above - [x] I have either (a) linked existing issues with `Fixes: #` / `Closes #` / `Refs #` OR (b) described the issue in-PR following the relevant issue template - [x] I have not referenced internal/instance-local Paperclip issues or links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip` URLs) - [x] My branch name describes the change (e.g. `docs/...`, `fix/...`) and contains no internal Paperclip ticket id or instance-derived details - [x] I have run tests locally and they pass - [x] I have added or updated tests where applicable - [x] I have updated relevant documentation to reflect my changes - [x] I have considered and documented any risks above - [ ] All Paperclip CI gates are green - [ ] Greptile is 5/5 with no open P2s, recommendations, or follow-ups - [x] I will address all Greptile and reviewer comments before requesting merge 🤖 Generated with [Claude Code](https://claude.com/claude-code) Co-authored-by: Claude Opus 5.5 <noreply@anthropic.com>	2026-11-07 03:46:20 -06:00
DottaandClaude Opus 5.5	ef83d566ca	fix(native): ask for the result once after a restart continuation ends without one (#19771 ) ## Thinking Path > - Paperclip is the open source app people use to manage AI agents for work > - Native runs continue a turn that a control-plane restart lost, in the same conversation (#19501, #19699) > - In restart storms 5, 6b and 8, ACPX Claude runs crossed restarts, ran the continuation, and then failed with `native_session_retry_exhausted` > - The continuation completed, but Claude ended it with "I'll wait for the notification when it completes" for a background command, and did not call `paperclip_finish` > - The next same-run attempt then sent no turn at all and failed with "session returned no semantic result" > - This pull request makes the continuation ask for the result, and asks once more in the same attempt if the continuation still ends without one > - The benefit is that a restart-interrupted task settles without a Retry, and the restarts that the run survived cannot block the request ## Linked Issues or Issue Description Refs #19501, #19699, #19720 What happened? Storm 8, run 84c532f7 and its Retry 0faead66 (ACPX Claude, task CHA-5). The steps are the same in both runs: 1. `resume_dead_runner`, then `session.resumed`, then `turn.failed` with `provider_turn_lost_on_restore` (recoverable). 2. The restart continuation runs. Claude starts the bench in the background and ends the turn with "I'll wait for the notification when it completes". The turn completes with no `paperclip_finish`. 3. Lifecycle: "provider turn completed without a semantic result; same-run disposition recovery persisted" (attempt 2). 4. 30 s later, attempt 3 restores the session. It sends no turn. After about 2 s it fails with `native_finalization_missing: session returned no semantic result`, and the attempt count makes it `native_session_retry_exhausted`. Expected behavior The continuation tells the agent to finish and report its result. If the continuation still completes without a result, Paperclip asks for the disposition one time. Restarts that the run already survived do not block that request. An agent that never reports a result still fails closed. Root cause - `packages/paperclip-runner/src/drivers/codex/codex-harness-session.ts` `startTurn` (lines 224 and 248): the restart continuation uses the driver's one-shot disposition marker (`dispositionOnlyRecoveryAvailable`). #19699 uses the marker on purpose, so that a crash can adopt the accepted continuation turn. The marker then stays consumed with the continuation turn id. - `packages/paperclip-runner/src/drivers/codex/codex-session-terminal.ts` (line 226): only a lost continuation gives the marker back. A completed continuation with no result does not. - `packages/paperclip-runner/src/native-session-runtime.ts` (`dispositionRecoveryWasSubmitted`, about line 2761): on the next attempt, the consumed marker looks like a disposition request that already ran. Recovery replays the continuation's terminal and starts no turn. So the disposition request never happens. - `server/src/services/native-runtime/native-session-executor.ts` (lines 9755-9761 and `nativeSessionFailureDisposition` at 7768): the `semantic_result_missing` same-run retry charges a provider attempt on the same counter as restart resumes. In this run, attempt 3 was the last allowed attempt. - The continuation prompt (`restartContinuation`) did not tell the agent to report a result, or not to stop and wait for a background notification. ## What Changed - Codex-protocol driver (used by Codex and by ACPX through runnerd): when a restart continuation completes without a semantic result, the driver gives back the one-shot disposition marker. The disposition request is not a continuation, so it consumes the marker for good. - Native session runtime: after that, the same attempt sends one disposition request (`Paperclip semantic-result recovery after a restart continuation ... invoke exactly one paperclip_finish or paperclip_block`). It does this only when the driver shows that the continuation borrowed the marker and gave it back. Other drivers keep the current behavior. - Restart continuation prompt: it now says to finish in this turn, not to end the turn to wait for a background command or a notification, and to report one `paperclip_finish` or `paperclip_block`. - `doc/execution-semantics.md`: one additive paragraph. - No server change. The disposition request runs in the same attempt, so it uses no provider attempt. This avoids `native-restart-recovery.ts` (#19747). ## Verification Red before the fix, green after: - `codex-app-server-driver.recovery.test.ts` "keeps one disposition request after a restart continuation completes without a result". Red: marker stays consumed on `turn-2`. Green: the marker is given back, one disposition turn starts, and a resultless disposition turn does not re-arm. - `native-session-runtime.test.ts` "settles a restart continuation that ended without a result through one disposition turn (Codex driver)". Real Codex-protocol driver with a fake transport. Red: only one `turn/start`, then `native_finalization_missing`. Green: the disposition turn `turn-3` reports the result and the run completes. - `native-session-runtime.test.ts` "asks once for the disposition when a restart continuation ends without a result" and "fails closed when the driver keeps the continuation's disposition marker". Also run: - `npx vitest run src/native-session-runtime.test.ts src/drivers/codex/` in `packages/paperclip-runner`: 593 passed. - `src/live/runnerd-restart-continuation.test.ts` (real runnerd and fake Codex, killed runner): 5 passed. - `tsc --noEmit` for `packages/paperclip-runner`. - `pnpm verify` exits 2 because the doc change is a global CI input. Required CI supplies the broad coverage. Not run: a live replay of storm 8 t05 with Claude. The chaos harness needs provider keys from the operator's shell. ## Risks - Low to medium. A run whose continuation ends without a result now gets one more provider turn in the same attempt. The bound is one disposition request per continuation. Each continuation still needs an admitted restart, and the provider-attempt budget bounds those. - If the controller crashes after the continuation completes but before its checkpoint, the checkpoint keeps the stricter consumed marker. That case fails closed as before. - The prompt text changes for restart continuations. It does not change a protocol schema or a profile digest. ## Model Used - Claude Opus 5.5 (`claude-opus-5-5`), Anthropic, through Claude Code with tool use (shell, file edits, code execution). ## Checklist - [x] I have included a thinking path that traces from project context to this change - [x] I have specified the model used (with version and capability details) - [x] I have checked ROADMAP.md and confirmed this PR does not duplicate planned core work - [x] I have searched GitHub for duplicate or related PRs and linked them above - [x] I have either (a) linked existing issues with `Fixes: #` / `Closes #` / `Refs #` OR (b) described the issue in-PR following the relevant issue template - [x] I have not referenced internal/instance-local Paperclip issues or links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip` URLs) - [x] My branch name describes the change (e.g. `docs/...`, `fix/...`) and contains no internal Paperclip ticket id or instance-derived details - [x] I have run tests locally and they pass - [x] I have added or updated tests where applicable - [x] I have updated relevant documentation to reflect my changes - [x] I have considered and documented any risks above - [ ] All Paperclip CI gates are green - [ ] Greptile is 5/5 with no open P2s, recommendations, or follow-ups - [x] I will address all Greptile and reviewer comments before requesting merge 🤖 Generated with [Claude Code](https://claude.com/claude-code) --------- Co-authored-by: Claude Opus 5.5 <noreply@anthropic.com>	2026-11-07 03:22:37 -06:00
DottaandClaude Opus 5.5	fff70fe49e	fix(runner): relaunch a provider whose runner died before admitting it (#19784 ) ## Thinking Path > - Paperclip is the open source app people use to manage AI agents for work > - Native runs execute through `paperclip-runnerd`. When the control plane restarts, recovery starts a new runnerd process, and that process restores the provider (for example the Codex app server) from durable state. > - Each provider launch writes a durable startup fence before it spawns the process. Admission clears the fence. The fence stops a second runner from launching a provider while an unadmitted one may still run. > - A restart chaos wave sent SIGTERM and then SIGKILL to the control plane in quick succession. The second kill landed after the restored Codex provider was spawned and before it was admitted. > - The fence stayed in state with phase `spawned`. Every later runner refused to restore. The recovery probe's `runner.drain` failed with "provider startup ownership remains unadmitted", and the task needed a manual Retry. > - This pull request lets a new runner retire that fence when the recorded provider process and its process group have provably exited. It keeps every other fence closed. > - The benefit is that a double restart during provider relaunch continues automatically. ## Linked Issues or Issue Description What happened? A Codex run was active. A graceful restart (K2) suspended it, and recovery started a new runnerd that began restoring the provider. That runnerd spawned the Codex app server (pid recorded, phase `spawned`). A hard restart (K1) 9 s later killed it before admission. At the next boot, recovery chose `resume_dead_runner` and queued its `runner.drain` probe. The new runnerd failed the probe with `command_execution_failed: provider startup ownership remains unadmitted`. The run ended `native_session_recovery_failed`, and the task needed a Retry. The kept provider state had `lifecycle: "turn_active"` and a `startupAttempt` with `phase: "spawned"`, `trigger: "restore"`, `processId` = `processGroupId`, and no recorded exit. That process no longer existed. Steps to reproduce 1. Start a Codex task on a local runner. 2. Restart the control plane gracefully during the turn. 3. Kill the control plane again while recovery relaunches the provider, before the provider is admitted. Expected behavior Recovery relaunches the provider and continues the run. Actual behavior Every later runner refuses to restore, and the run fails. ## What Changed - `provider_backend.rs`: after a runner loads durable provider state, `retire_orphaned_startup_attempt` clears the startup fence only when all of these hold: - the attempt is in phase `spawned` (neither admitted nor failed); - the session is still restorable (`session_open`, `turn_active` or `provider_exited`); - signal 0 returns `ESRCH` for both the recorded process and its process group. It records a `provider_startup_retired` diagnostic event with the attempt, persists the state, and lets the normal restore path relaunch the provider. - Intent-phase fences (OpenCode). Three OpenCode runs after a K6 crash loop, and other runs on master, stopped at phase `intent` with no recorded process. Under load, the runner spends seconds verifying launch artifacts after it records intent. An intent alone could not show whether a process was started. - A new intent now carries `beforeSpawn: true`. - A new `SpawnStarting` observation clears the mark immediately before every provider spawn site in `start_with_tools_observed`. That clear is fsynced, but it emits no extra diagnostic event. - An intent still marked `beforeSpawn` (in a restorable session) proves that no process was started, so the fence is retired. - An intent that reached the spawn, or one written before this mark existed, stays fenced. - A runner that predates the field rejects the state as unknown (`deny_unknown_fields`), which fails closed. - `validate()` only allows the mark on an intent or on a spawn-stage failure. - The fence stays closed for: - an intent that reached the spawn, or one without the before-spawn mark; - a failed startup (initialization or spawn); - a session that recovery closed; - a process or group that may still run; - a permission error or an invalid id. - The existing test `failed_authenticated_identity_commit_keeps_the_durable_startup_fence` now uses a live process group instead of the fixed pid 123. That pid might not exist on a CI host, so the test would no longer prove a running provider keeps the fence. ## Verification - Red before the fix: the new integration test `restart_relaunches_a_provider_whose_runner_died_before_admitting_it` (fake Codex app server; turn active; a `spawned` restore fence with an exited process group; then the recovery `runner.drain` probe) failed with `provider startup ownership remains unadmitted`, the incident error. After the fix it passes. It shows one more `thread/resume`, the retired diagnostic, and a cleared fence. - Unit tests (unix-only module): retirement for each restorable lifecycle, and for an intent still before the spawn. A `SpawnStarting` outside its intent is rejected. The fence stays closed for: - an intent that reached the spawn; - an intent without the before-spawn mark; - a real child that survives its killed leader (process-group probe, no stubs); - a failed spawn; - a failed admission; - a closed session; - a live provider; - a surviving process group. - `cargo test -p paperclip-runner-core --test codex_provider`: 119 passed. The startup event counts are unchanged, because the spawn-start mark emits no event. The existing fence tests (`failed_provider_startup_is_persistently_fenced_before_another_process_can_resume`, `durable_recovery_closes_a_provider_that_reopens_a_settled_turn`) still pass. - `cargo test -p paperclip-runner-core --lib`: 570 passed. `cargo check --workspace --tests` passes. - `cargo fmt --check` passes. ## Risks - Process ids can be reused. A reused id only makes a gone process look alive, so the fence stays closed. Retirement needs `ESRCH` for both the pid and the group. - A provider process that moved to a new process group is outside this check. Before admission the runner has sent it no turn, so it cannot repeat provider work. - Intent fences written by older runners, including the kept incident states, have no before-spawn mark. They stay fenced and still need the Retry. New launches carry the mark. - A runner-side change takes effect on local runners after the runner build. Daytona needs a new image. > For core feature work, check [`ROADMAP.md`](ROADMAP.md) first and discuss it in `#dev` before opening the PR. Feature PRs that overlap with planned core work may need to be redirected — check the roadmap first. See `CONTRIBUTING.md`. ## Model Used - Anthropic Claude Opus 5.5 (`claude-opus-5-5`), used through Claude Code with tool use (shell, file edits, test execution). Default context window. Extended reasoning was available. ## Checklist - [x] I have included a thinking path that traces from project context to this change - [x] I have specified the model used (with version and capability details) - [x] I have checked ROADMAP.md and confirmed this PR does not duplicate planned core work - [x] I have searched GitHub for duplicate or related PRs and linked them above - [x] I have either (a) linked existing issues with `Fixes: #` / `Closes #` / `Refs #` OR (b) described the issue in-PR following the relevant issue template - [x] I have not referenced internal/instance-local Paperclip issues or links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip` URLs) - [x] My branch name describes the change (e.g. `docs/...`, `fix/...`) and contains no internal Paperclip ticket id or instance-derived details - [x] I have run tests locally and they pass - [x] I have added or updated tests where applicable - [x] I have updated relevant documentation to reflect my changes - [x] I have considered and documented any risks above - [x] All Paperclip CI gates are green - [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups - [x] I will address all Greptile and reviewer comments before requesting merge 🤖 Generated with [Claude Code](https://claude.com/claude-code) --------- Co-authored-by: Claude Opus 5.5 <noreply@anthropic.com>	2026-11-07 03:12:13 -06:00
DottaandClaude Opus 5.5	35d41f11bb	fix(runner): keep Codex thread usage reported before a run's first turn as history (#19783 ) ## Thinking Path > - Paperclip is the open source app people use to manage AI agents for work > - A new Codex run can attach to a Codex thread that earlier runs used > - In restart storm 9, a comment-wake run attached to that thread after a restart. Before its first turn, it received the thread's usage from the earlier run > - The runnerd transport gave that usage an empty turn owner. The driver rejected it as an unowned authoritative notification and failed the run > - The task then stopped with `native_event_replay_conflict` and needed the next run to finish > - This pull request keeps usage that arrives before a run's first turn as history > - The benefit is that a run is not lost to earlier work's usage, and it is not billed for that usage ## Linked Issues or Issue Description Refs #19718, #19722 What happened? Restart storm 9 (seed 7111), task CHA-5 (Codex). Run A succeeded. A K2 restart fired. The comment-wake run B then started on a fresh runnerd and attached to the same durable Codex session. Before run B started a turn, runnerd committed a `usage.reported` event for the thread's earlier usage. The transport rehydrated it as `thread/tokenUsage/updated` with `turnId: ""`, because no turn was bound yet. `classifyCodexNotification` classifies an empty id as `invalid_authority`. The driver failed the run with "Provider authoritative notification thread/tokenUsage/updated did not name its execution owner." Recovery then stopped with `native_event_replay_conflict`. Expected behavior Usage that arrives before a run's first turn does not fail the run. If the session has no usage baseline yet, that usage is history, so the run is not billed for it. Steps to reproduce 1. Use fake Codex with `--usage-before-first-turn`. It reports thread usage right after `thread/start`. 2. Open a driver session over the real runnerd transport. Wait until runnerd commits the usage, then start a turn. 3. Before this change, the run fails with "did not name its execution owner". ## What Changed - `runnerd-codex-transport.ts` (`rehydrateRunnerdUsageNotification`): the transport omits `turnId` when no turn is bound. It no longer sends an empty owner. - `codex-session-notifications.ts`: usage reported before the session's first turn, with no baseline yet, sets the baseline (history). Usage during or after a turn keeps its existing accounting. - Fake Codex: new `--usage-before-first-turn` flag. - New test `src/live/runnerd-codex-pre-turn-usage.test.ts` with real runnerd, the real Codex driver and fake Codex. ## Verification - Red, run twice before the fix: the test failed with `NativeProviderTerminalFailure: Provider authoritative notification thread/tokenUsage/updated did not name its execution owner.` This is the live message. - Green, run three times after the fix: the turn completes. The run's usage `runDelta` is 7/2 (thread total 12/3 minus the 5/1 reported before the turn). - `npx vitest run src/drivers/codex src/live/runnerd-codex-transport src/native-session-runtime`: 991 of 992 tests pass. One settlement test timed out under parallel load. It passes alone (19/19), and this change does not touch it. - `pnpm run typecheck` in `packages/paperclip-runner` passes. `cargo fmt` is clean. - Not run: the live restart-chaos replay. It needs provider credentials, which this session does not load. ## Risks - Low risk. The accounting change applies only when no turn is active, no turn is pending, the session has no settled turns and there is no baseline. In that state, the usage cannot belong to this run's work. - The test reproduces the failing shape (usage committed before the first turn) with a fresh session. It does not reproduce the exact restart and run-attach sequence from the storm. ## Model Used - Claude Opus 5.5 (`claude-opus-5-5`), Anthropic, used through Claude Code with tool use (shell, file editing). Default context window and reasoning mode. ## Checklist - [x] I have included a thinking path that traces from project context to this change - [x] I have specified the model used (with version and capability details) - [x] I have checked ROADMAP.md and confirmed this PR does not duplicate planned core work - [x] I have searched GitHub for duplicate or related PRs and linked them above - [x] I have either (a) linked existing issues with `Fixes: #` / `Closes #` / `Refs #` OR (b) described the issue in-PR following the relevant issue template - [x] I have not referenced internal/instance-local Paperclip issues or links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip` URLs) - [x] My branch name describes the change (e.g. `docs/...`, `fix/...`) and contains no internal Paperclip ticket id or instance-derived details - [x] I have run tests locally and they pass - [x] I have added or updated tests where applicable - [x] I have updated relevant documentation to reflect my changes - [x] I have considered and documented any risks above - [ ] All Paperclip CI gates are green - [ ] Greptile is 5/5 with no open P2s, recommendations, or follow-ups - [x] I will address all Greptile and reviewer comments before requesting merge 🤖 Generated with [Claude Code](https://claude.com/claude-code) --------- Co-authored-by: Claude Opus 5.5 <noreply@anthropic.com>	2026-11-07 02:19:42 -06:00
Dotta Paperclip Codex	af0fe8fe81	Keep personal MCP connections functional while idle tenants sleep (#19427 ) ## Thinking Path > - Paperclip manages work for AI agents. > - Personal MCP connections should remain enabled while an idle tenant sleeps. > - Unfinished OAuth, transfer and delivery work must retain its owner and deadline. > - Cloud can receive bounded metadata and incoming work while the tenant remains the company-scoped authorizer. > - Current identity, revision and delivery acknowledgments establish when ownership has transferred. > - This change preserves useful wake, retries and revocation while making settled ownership inspectable without writes. ## Linked Issues or Issue Description Refs: #19377 and #19750. Hosted companion: [paperclip-cloud#1217](https://github.com/paperclipai/paperclip-cloud/pull/1217). What happened? Enabled personal MCP grants and subscriptions could keep an otherwise idle tenant awake. Ignoring those records would lose discovery, authorization, delivery and revocation obligations. Expected behavior Unconsumed authorization codes, device requests, file handoffs and delivery work retain their original deadlines. Settled connections remain enabled and become quiet after the current external owner acknowledges responsibility. Incoming useful work resumes normal authorization and delivery; revocation still takes effect for the current company. Steps to reproduce Complete normal PKCE/device consent and company selection, synchronize client/device and revocation state, retain the connection while idle, then exercise useful tools/events and revocation. Sleep eligibility requires current incoming/deadline ownership throughout. ## What Changed - Add bounded signed client/device metadata and revocation synchronization with exact revision, identity and ACK checks, startup recovery and finite legacy-device cutover. - Preserve company selection, authorization and operation identity. Register grant work before its INSERT in the same transaction; retain rollback, expiry and retry behavior. - Require current managed identity/resource before hosted publication. Receipt-cleared re-enable must obtain a fresh source ACK before device creation. - Reuse read-only settings and inspection budgets; connect MCP owners to normal startup, drain and shutdown. - Bound metadata pages and the actual signed request body while preserving the default limits of other operations. - Generate migration 0440 after the merged Legacy migration. Preserve all 438 existing executable migrations and the journal prefix; retain the normal five newest snapshots. - Preserve the merged transaction-owner forwarding and regression coverage from #19750 through normal ancestry integration. ## Verification - Current own Shared/SDK, database, eval-kernel and Runner builds passed, together with all seven normal application TypeScript programs. Missing generated package exports/workspace links were restored through normal setup; the original setup failures were retained. No source, compiler option, test assertion or timeout was weakened. - Normal migration generation changed only the five intended MCP tables; its SQL is byte-identical to the reviewed MCP delta. Fresh reference databases and both retained master/Muse histories upgraded through 0440, preserving historical hashes, row fields, schema and idempotence. Direct assertions cover the Legacy null default and MCP null/zero defaults. Two selected history cases passed; the other 21 database cases were unselected. - All six current MCP lifecycle cases passed with zero skips: normal PKCE approval intent, ACK recovery after outage, mutation during publication, disable/re-enable with original expiry, company-deletion rollback/commit and key rotation. - All 81 checks in five current whole files passed with zero skips: OpenAPI 34, read-only settings 2, diagnostic catalog 25, PostgreSQL diagnostics 7 and dependency scheduling 13. PostgreSQL fixtures ran normal migrations before test imports. - Earlier canonical proof at App `cd1c8c6` / Cloud `9f67531` includes real 60-second rate and three 15-second quiet windows, useful work and three revokes. Later paired proof at App `43af514` / Cloud `914eb0f` plus its reviewed candidate includes normal DCR, PostgreSQL metadata, a 144,017-byte signed publication, actual ACK, cap/default-413 controls and a real 15-second quiet window. The relevant producer/signing/wire inputs remain byte-identical in this integration; shared changes are qualified above. These remain source-scoped observations, not a fresh full canonical run on the integrated tree. - All known test owners, process groups and OS sockets closed; an independent final PostgreSQL audit found no remaining test sessions. One dependency-test trace recorded 46 opens and 45 close events. Its cause is unknown; this is not claimed as proof of graceful closure. - Fresh exact-head remote checks passed: 59 successful and 4 skipped contexts, with a complete current 5/5 Greptile review and all seven review threads resolved. Targeted local checks do not constitute a new whole-repository test run. ## Risks App and Cloud must agree on identity, revision, namespace, deadlines and revocation. Partial rollout, unavailable authority or missing ACK must retain awake debt. Shared startup/shutdown and settings changed since the earlier canonical profile, so historical observations carry only within their stated source scope. No deployed Railway/Neon suspension, Cloud alarm, savings or complete hosted Dot/Muse acceptance is claimed. ## Model Used OpenAI `gpt-6.1-sol` produced code and verification, with a Codex coordinator reviewing and integrating the changes. The coordinator's exact runtime model ID and context-window sizes were not exposed. ## Checklist - [x] I have included a thinking path that traces from project context to this change - [x] I have specified the model used (with version and capability details) - [x] I have checked ROADMAP.md and confirmed this PR does not duplicate planned core work - [x] I have searched GitHub for duplicate or related PRs and linked them above - [x] I have either (a) linked existing issues with `Fixes: #` / `Closes #` / `Refs #` OR (b) described the issue in-PR following the relevant issue template - [x] I have not referenced internal/instance-local Paperclip issues or links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip` URLs) - [x] My branch name describes the change (e.g. `docs/...`, `fix/...`) and contains no internal Paperclip ticket id or instance-derived details - [x] I have run tests locally and they pass - [x] I have added or updated tests where applicable - [x] I have updated relevant documentation to reflect my changes - [x] I have considered and documented any risks above - [x] All Paperclip CI gates are green - [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups - [x] I will address all Greptile and reviewer comments before requesting merge --------- Co-authored-by: Paperclip <noreply@paperclip.ing> Co-authored-by: Codex <noreply@openai.com>	2026-11-07 02:12:48 -06:00
DottaandClaude Opus 5.5	ee1e1a3994	fix(runner): adopt the turn a dying controller's turn.start already started (#19772 ) ## Thinking Path > - Paperclip is the open source app people use to manage AI agents for work > - A remote Runner hosts the provider (here Claude through ACPX) and keeps working while the control plane restarts > - A controller can die after the Runner accepts its `turn.start` but before the controller checkpoints the accepted turn or emits `turn.accepted` > - The provider keeps running that turn. On reattach, recovery saw no checkpointed active turn, and the Runner's replayed `turn/started` failed the session with "Provider started an unexpected turn" > - The run then failed with `native_event_replay_conflict`, replay was blocked, and a finished issue moved from done to blocked > - This pull request lets recovery adopt that turn when the Runner's authenticated command result proves it is the controller's own turn > - The benefit is that a controller crash loop no longer fails a run that the provider is still doing correctly, and a foreign turn still fails closed ## Linked Issues or Issue Description What happened? In a restart chaos run (Claude through ACPX on a remote Runner, crash loop fault), a follow-up comment woke a new run. The controller sent `turn.start` and the crash loop began about one second later. After the restarts, the controller reattached to the same Runner and failed with "Provider started an unexpected turn". The run failed with `native_event_replay_conflict` and recovery required workspace repair. What did you expect? The new controller generation adopts the turn that the old generation started, waits for its terminal, and finishes the run. Evidence The durable controller journal for the run shows command 4, `turn.start` with `turnId: turn_lab_18ac…`, completed with `{ providerTurnId: turn_lab_18ac…, status: accepted }`. The Runner emitted `turn.started` for that turn 1.4 s after the command, after the old controller died. The replacement's `session.snapshot` returned `activeProviderTurnId: turn_lab_18ac…`. The controller's own checkpoint had no active turn and the run had no `turn.accepted` event. Related: #19711, #19691, #19718 ## What Changed - `codex-app-server-driver-impl.ts` `recoverSession`: when the checkpoint has no active turn, no semantic result, and no autonomous goal or disposition turn applies, adopt the single in-progress provider turn if the transport proves that this run's latest completed `turn.start` accepted that exact turn id. Any other active turn is not adopted and still fails closed. - `codex-session-state.ts`: a recovered session with an adopted turn emits the missing `turn.accepted` before any of that turn's notifications. - `app-server-transport.ts`: new optional transport method `controllerAcceptedTurnId()`. - `runnerd-codex-transport.ts`: implement it from the durable command journal (`controllerAcceptedTurnStartId`). The latest `turn.start` must be completed and accepted, its result must name the requested turn id, and no run attachment may come after it. - `DURABLE_TRANSPORT.md`: document the adoption rule. ## Verification - Red/green with the real `paperclip-runnerd` and the scripted ACPX Claude sidecar: `npx vitest run src/control-plane/acpx-controller-recovery.test.ts -t RC-59`. The old controller sends `turn.start` and stops before the provider accepts it. The provider accepts and starts the turn while no controller is attached. A replacement controller adopts the live Runner through the production transport and `CodexAppServerDriver.recoverSession`. Before the fix: `activeTurnId` is null (the session then fails on `turn/started`). After the fix: events are `turn.accepted`, `turn.started`, `turn.completed` for the same turn, with one `turn.start` to the provider. - Driver tests: `npx vitest run src/drivers/codex/codex-app-server-driver.recovery.test.ts -t "controller that died"`. Adoption passes. With no accepted result, or a result for a different turn, `startTurn` still fails with "Provider started an unexpected turn." - Journal unit tests: `npx vitest run src/live/runnerd-codex-transport.test.ts -t controllerAcceptedTurnStartId` (pending, failed, rejected, mismatched turn, later attachment, later pending start all return null). - Regression: `src/drivers/codex` (all files), `src/live/runnerd-restart-continuation.test.ts`, `src/live/runnerd-codex-transport-adoption.test.ts`, `src/live/runnerd-codex-transport-release-resume.test.ts`, `src/control-plane/acpx-controller-recovery.test.ts` pass. `pnpm run typecheck:typescript` passes in `packages/paperclip-runner`. - `pnpm verify` asks for broader coverage (exit 2). Required CI supplies it. ## Risks - Low to medium. The change only acts when the checkpoint has no active turn and the Runner reports exactly one active turn. Adoption needs the Runner's authenticated, run-scoped `turn.start` result for that exact id. Without that proof, behavior does not change. - If a `turn.start` result is still pending when the replacement reads the thread, recovery does not adopt and fails closed as before. - Not proven on Daytona. I did not run the paid replay. > For core feature work, check [`ROADMAP.md`](ROADMAP.md) first and discuss it in `#dev` before opening the PR. Feature PRs that overlap with planned core work may need to be redirected — check the roadmap first. See `CONTRIBUTING.md`. ## Model Used - Claude Opus 5.5 (Anthropic), model ID `claude-opus-5-5`, used through Claude Code with tool use (shell, file edits, test runs). ## Checklist - [x] I have included a thinking path that traces from project context to this change - [x] I have specified the model used (with version and capability details) - [x] I have checked ROADMAP.md and confirmed this PR does not duplicate planned core work - [x] I have searched GitHub for duplicate or related PRs and linked them above - [x] I have either (a) linked existing issues with `Fixes: #` / `Closes #` / `Refs #` OR (b) described the issue in-PR following the relevant issue template - [x] I have not referenced internal/instance-local Paperclip issues or links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip` URLs) - [x] My branch name describes the change (e.g. `docs/...`, `fix/...`) and contains no internal Paperclip ticket id or instance-derived details - [x] I have run tests locally and they pass - [x] I have added or updated tests where applicable - [x] I have updated relevant documentation to reflect my changes - [x] I have considered and documented any risks above - [ ] All Paperclip CI gates are green - [ ] Greptile is 5/5 with no open P2s, recommendations, or follow-ups - [x] I will address all Greptile and reviewer comments before requesting merge 🤖 Generated with [Claude Code](https://claude.com/claude-code) --------- Co-authored-by: Claude Opus 5.5 <noreply@anthropic.com>	2026-11-07 01:50:32 -06:00
Devin FoleyandPaperclip	2d4f80504e	fix(runner): retain exact ACPX checkpoints after rejected turn starts (#19762 ) Preserve the exact idle ACPX conversation when a matching turn.start response rejects work with retryable SESSION_RESUME_REQUIRED. Require verified identity, no pending work, confirmed process cleanup and the provider lifetime fence before normal drain and suspension can publish a reusable checkpoint. Unknown acceptance and arbitrary closed states remain closed. The real Runner regression completes the next turn on attempts 2 and 3, requires successful terminal status for the exact submitted turn, and checks expectedIdentity on both resume requests. Controlled wire faults reject failed, cancelled and missing-identity recovery. Validation: 193 affected Rust tests on unchanged Rust source/fixtures; 134 recovery integration tests, 14 environment-gated skips; 21 Claude effort tests; all server typecheck layers. Exact-head CI: 59 successful checks and statuses, 6 intentional skips. Greptile Apex 5/5, no unresolved findings. Hosted deployment and task acceptance remain separate. Fixes: #19751 Refs: #19366 Refs: #19745 Co-Authored-By: Paperclip <noreply@paperclip.ing>	2026-11-06 23:45:35 -08:00
DottaandClaude Opus 5.5	7475577cdb	fix(daytona): keep a runner sandbox alive through the controller reconnect grace (#19754 ) ## Thinking Path > - Paperclip is the open source app people use to manage AI agents for work > - A remote agent run executes in a Daytona sandbox and keeps working while the Paperclip server restarts > - The server reattaches that runner within a 7-minute reconnect grace > - Daytona stops an idle sandbox after its `autoStopInterval`, and it counts only SDK and lifecycle calls as activity > - With the server down, nothing touches the sandbox, so a 5-minute auto-stop kills the runner before the server returns > - This pull request makes the host tell the provider its reconnect grace, so Daytona never auto-stops a runner sandbox inside that grace > - The benefit is that a controller outage of up to 7 minutes no longer turns a healthy remote run into a blocked task ## Linked Issues or Issue Description Refs #19199 (the same floor for the warm runner idle window). Refs #19741 (follow-up delivery through restarts; no overlap). What happened? A restart-chaos wave on Daytona killed the server for 4m51s while a per-turn remote run was active. The environment used `autoStopInterval: 5`. The last sandbox activity was at 06:09:16. The server came back at 06:14:19 and then crashed again. At 06:15:21 recovery called the sandbox. The plugin found it not started and started it again. The runner identity marker was still on disk, but its process was gone: `native.remote_runner_recovery_failed {stage: process_verification, reason: process_not_running}`, then `runner_remote_process_identity_unavailable`. The task went from done to blocked. An earlier wave showed the same failure after a 4m45s outage. Expected behavior A sandbox that holds a live remote runner survives any controller outage up to the reconnect grace. The server reattaches the runner and the run continues. Steps to reproduce 1. Create a Daytona environment with `autoStopInterval: 5` and a `paperclip_runner` agent. 2. Start a remote run and kill the server for more than 5 minutes (less than 7). 3. Restart the server. Recovery reports `process_not_running` and the task becomes blocked. ## What Changed - `server`: add `resolveRunnerReconnectGraceMsForRun`. It returns `REMOTE_RUNNER_RECONNECT_GRACE_MS` for `paperclip_runner` on a sandbox environment. - `server`: forward `runnerReconnectGraceMs` to the provider worker on lease acquisition and on the recovery reattach resume. It uses the same provider-only path as `warmRunnerIdleTimeoutMs`. It is not lease identity, lease metadata, or saved environment config. - Daytona plugin: the effective auto-stop is at least the largest host floor (warm idle window or reconnect grace) plus 5 minutes. With the current grace this is 12 minutes. The plugin applies it at creation and raises an older sandbox's shorter interval on resume (bounded, best effort). - Daytona plugin: keep the forwarded grace out of the normalized config. Update the `autoStopInterval` manifest description. - `doc/execution-semantics.md`: document the reconnect-grace floor next to the warm floor. ## Verification - Red/green Daytona plugin tests: `cd packages/plugins/sandbox-providers/daytona && npx vitest run --config vitest.config.ts`. The new cases failed before the fix (for example `expected 120000 to be >= 720000`, and no `setAutostopInterval` call on resume). All 605 tests pass after the fix. - Server tests: `cd server && npx vitest run src/__tests__/environment-run-orchestrator.test.ts src/__tests__/environment-runtime.test.ts`. 247 pass. They prove acquisition forwards the grace only for `paperclip_runner` on a sandbox, that the reattach resume forwards it, and that it does not reach lease metadata or saved config. - `pnpm typecheck` for the plugin and `tsc --noEmit` for the server are clean. - `pnpm verify` asks for broad CI coverage because a doc changed. Required CI supplies it. - Evidence from the kept wave database: lease metadata shows `autoStopInterval: 5`, `reuseLease: false`, `runnerLifecycleMode: per_turn`. The run had no events between 06:09:16 and 06:14:19. ## Risks - Cost: a runner sandbox that leaks (no cleanup) now auto-stops after 12 minutes instead of a shorter configured value. Cleanup still stops or destroys released sandboxes. Explicit `0` and longer values are unchanged. Auto-archive and auto-delete are unchanged. - I did not inspect the sandbox state in Daytona directly. Cleanup destroyed it before this investigation. The proof is the timing, the lease config, and the `process_not_running` result after a restart that kept the disk. - No live Daytona replay ran. ## Model Used - Claude Opus 5.5 (`claude-opus-5-5`), Anthropic, with tool use (shell, file edit, code execution) in Claude Code. ## Checklist - [x] I have included a thinking path that traces from project context to this change - [x] I have specified the model used (with version and capability details) - [x] I have checked ROADMAP.md and confirmed this PR does not duplicate planned core work - [x] I have searched GitHub for duplicate or related PRs and linked them above - [x] I have either (a) linked existing issues with `Fixes: #` / `Closes #` / `Refs #` OR (b) described the issue in-PR following the relevant issue template - [x] I have not referenced internal/instance-local Paperclip issues or links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip` URLs) - [x] My branch name describes the change (e.g. `docs/...`, `fix/...`) and contains no internal Paperclip ticket id or instance-derived details - [x] I have run tests locally and they pass - [x] I have added or updated tests where applicable - [x] I have updated relevant documentation to reflect my changes - [x] I have considered and documented any risks above - [ ] All Paperclip CI gates are green - [ ] Greptile is 5/5 with no open P2s, recommendations, or follow-ups - [x] I will address all Greptile and reviewer comments before requesting merge 🤖 Generated with [Claude Code](https://claude.com/claude-code) --------- Co-authored-by: Claude Opus 5.5 <noreply@anthropic.com>	2026-11-07 01:36:18 -06:00
Nicky Leach	8be6d70538	fix(runner): select Claude effort again after a cold session resume (#19708 )	2026-11-06 23:10:51 -08:00
Nicky Leach	167e39c4ef	fix(runner): keep warm run.attach events on ordinary accounting (#19707 )	2026-11-06 23:09:57 -08:00
Dotta Paperclip Codex	96bc021edb	fix(server): certify settled legacy processes for future retries (#19377 ) ## Thinking Path > - Paperclip is the open source app people use to manage AI agents for work. > - Bounded retries must preserve current authority, budgets and deadlines. > - The tenant can wait for supported future work after the source process and its cleanup stop. > - Retained process identity alone cannot prove that cleanup finished. > - This change records host-owned settlement and checks its exact identity before a retry can cover its wait. > - Uncertain process state, changed authority, live claims and cleanup debt keep the tenant awake. ## Linked Issues or Issue Description Refs #19001. Related dependencies: #19019 and #18988. Related #19340 covers explicit Native task Retry; this change covers future Legacy process retries. Current integrated source: `1645970a9322d1213ba25fc7b52366c285682977`, normally merged with actual master `131b566ca4fa866c4348739c75cfe48c805b3398`. The prerequisites above are merged. This PR targets `master`. What happened? A future issue, company or review retry can retain its failed source process identity. The deadline reader could not prove that host cleanup finished. Supported waits stayed blocked. Ordinary issue retries also needed an exact source-settlement check, and represented coalesced requests needed exact input coverage. Expected behavior A supported future retry covers only its existing wait, under current company and actor authority, after exact host settlement. Missing, malformed, stale, cancelled, Native or unfinished source state stays blocked. No retry gains new execution authority. Steps to reproduce Fail an ordinary process or fail environment preparation before adapter entry. Let normal cleanup schedule the existing retry. Inspect its settlement and deadline, stop and reconstruct the owner, and admit one useful successor at the saved deadline. Hold cleanup or change authority to verify that the reader refuses coverage. ## What Changed - Add nullable internal `legacyProcessSettlement` state through normally generated migration `0439_cultured_impossible_man`. No backfill or adapter result creates the record. - Write exact host settlement after stopped-process and cleanup checks. Compare the current run and reject live claims or cleanup debt. Optional persistence failure preserves normal cleanup and keeps sleep coverage blocked. - Add a separate preparation receipt for a claimed Legacy run that failed before any adapter or Native dispatch. Require the same boot, run times, preparing stage, released claim and completed cleanup. A null PID alone proves nothing. - Clear settlement on a new claim, process metadata or Native selection. Omit the internal record from public serialized data. - Check exact source lineage and current authority for ordinary issue, company and taskless retries. Cover completed coalesced requests only when the admitted retry represents their exact inputs. - Add the closed `current_review_retry` wait with current reviewer, stage and existing issue authority checks. Require a nonempty current stage ID. - Add actual producer, cold reconstruction, SQL negative, redaction and optional-persistence controls. - Repair CI fixture expectations for the additive column, startup mock, budget owner and popup return URL. Bind the controlled Native comment server explicitly to loopback. - Replace temporary Slack clock logging with an exact persisted-deadline assertion. Wait until that real deadline before the existing single default poll. Keep both forced polls, business assertions and timing limits. ## Verification - On final integrated source `1645970a`, normal Shared/SDK prerequisites, Runner TypeScript and the entire normal App layered typecheck pass. Tracked source and lockfile remain unchanged. - All 26 whole-file settlement, recovery-reader and bootstrap controls pass. Seven separate real PostgreSQL producer/negative cases pass at `cf16c6a`; each has one selected passing case and 18 filtered registrations. Filtered registrations are not acceptance. - Master then changed the preparation source-lock scope. Its three intersecting cases were rerun on final `1645970a`: an actual failed company process, an actual failed ordinary issue process, and held preparation cleanup. Each preserves its source identity and original deadline and admits one useful successor. Issue and preparation cases exercise normal automatic retry; the company case uses the normal explicit bounded-retry producer. - The unchanged 26 controls and four other PostgreSQL cases retain their `cf16c6a` proof after a scoped source comparison. Optional settlement/preparation persistence failures keep certification blocked while normal cleanup completes. An entered adapter without process identity stays uncertified. This is scoped carry, not a claim that every earlier case ran again on the final head. - All recorded test owners and controlled groups closed. Final read-only SQL audits returned no test sessions. One earlier postcase resource barrier observed a transient unattributed database backend; that database and original evidence remain preserved. Its later disappearance is recovery, not an explained cause. No assertion, deadline or test body was relaxed. - Migration0439 was generated normally after master history. All executable SQL and journal history are preserved; the five retained snapshots are0435–0439. Every Legacy-owned patch and unrelated actual-master blob/mode is preserved. - Published exact head `1645970a9322d1213ba25fc7b52366c285682977` passes all current required checks: 68 successful contexts and eight expected skips after exhaustive pagination and superseded-run accounting. The fresh complete Greptile review scores this exact head 5/5. All four inline review threads are resolved. The latest Ponytail turn stopped without a verdict; one normal retry was requested, with no active turn or new finding observed. No old-head score is used. The original old-base policy failure, its dependent aggregate failure, and the corrected description-gate failure remain recorded. No full local repository suite is claimed; remote typecheck, test and build gates pass. To repeat the real database coverage, set both `PAPERCLIP_RECOVERY_DEADLINES_TEST_DATABASE_URL` and `PAPERCLIP_RECOVERY_DEADLINES_TEST_ADMIN_DATABASE_URL` to the same fresh dedicated test database and run the selected `recovery-deadline-acceptance.test.ts` cases with one worker. An unset URL, skipped case or filtered registration is not acceptance. The fixtures use controlled local processes and real PostgreSQL. Reconstruction creates new service owners inside the same test process. They do not prove deployed Cloud alarms, physical host/database suspension, new-host recovery or Native capacity settlement. The original30-second retry remains below the Cloud270-second minimum wake lead. The merge projection also includes actual master `c3180398faca815fed7a62674bd4b0c4e88884ae`, whose common completion path now sends deferred/recovery notifications. Its unpublished normal merge tree is `16b028d57150f8caa576e913f38343a365b542dd`. Normal Shared/SDK, Runner TypeScript and the full App graph pass on that combined source. One unchanged ordinary-issue acceptance case was rerun there: an actual failed process retains the original automatic retry deadline, admits one useful successor, and passes the settlement, authority and no-duplicate assertions. It passed in 45.055 s; 18 filtered registrations are not acceptance. All known owners and groups closed, and the independent final database audit found zero remaining test sessions. The successful database was removed normally. Recorded worker socket peak is unavailable for this run; parent-process zero values are not used as worker measurements. All 29 Legacy-owned paths and every unrelated master blob and mode are preserved. Two outside-diff review observations concern existing waiting-chat compaction and cross-host Native result-lease recovery. Their files are byte-identical to current master. This focused Legacy change does not fix or qualify those separate paths. ## Risks Settlement proves exact local closure. It does not cover live provider work, Native ownership, cancellation, costs, claims, cleanup debt or changed authority. Independent checks remain. Ship normal migration0439 with the reader and writer. Preserve executable history and the newest five snapshots0435–0439. Generate the MCP child's next migration normally after this parent. The prerequisites are merged; the final remote checks must use this integrated exact head. This proof uses controlled local processes and external PostgreSQL. It does not establish deployed Cloud alarm acceptance, physical host or database suspension, cold host recovery, or R5 Native capacity settlement. The30-second retry is below the Cloud minimum wake lead. This focused repair follows the roadmap's bounded recovery and Cloud deployment work. It adds no new provider policy. ## Model Used OpenAI `gpt-6.1-sol` assisted with readers, fixtures, source review and verification through Codex. A coordinating GPT-6-family agent implemented and reviewed shared lifecycle wiring and integration. Tools included Git, native TypeScript checks and controlled tests. Exact served revisions and context limits were not exposed. ## Checklist - [x] I have included a thinking path that traces from project context to this change - [x] I have specified the model used and its available capability details - [x] I have checked ROADMAP.md and related work - [x] I have searched GitHub for duplicate or related PRs and linked them above - [x] I have linked existing public work and described the issue - [x] I have not included internal issue IDs or private links - [x] My branch name describes the change - [x] Required focused checks pass at their explicitly recorded source/carry scopes above - [x] I have added or updated meaningful tests - [x] I have recorded the internal contract and migration requirements - [x] I have documented risks and evidence limits - [x] All required published exact-head Paperclip CI gates are green - [x] Published exact-head Greptile is 5/5 with no open findings in this focused diff; separate unchanged master observations are identified above - [x] I will address reviewer findings before requesting merge --------- Co-authored-by: Paperclip <noreply@paperclip.ing> Co-authored-by: Codex <noreply@openai.com>	2026-11-07 00:56:04 -06:00
Nicky LeachandClaude Opus 5.5	bf45f66619	docs(runner): separate the legacy-adapter paragraph in the Runner README (#19753 ) ## Thinking Path > - Paperclip is the open source app people use to manage AI agents for work > - The native Runner package has a README that explains its contracts > - One section explains how a resumed run gets a fresh-conversation handoff > - The next text, about legacy adapters, has no blank line before it > - Markdown renders the two texts as one paragraph, so the legacy-adapter text looks like part of the native handoff text > - This pull request adds the missing blank line > - The benefit is a README that separates native and legacy behavior clearly ## Linked Issues or Issue Description Issue type Formatting error in package documentation. Where is the issue? `packages/paperclip-runner/README.md`, the paragraph that starts "Legacy adapters advertise `supportsToolRefreshOnResume`". What's wrong? The paragraph has no blank line before it. Markdown joins it to the previous paragraph about the native fresh-conversation handoff. Suggested fix Add a blank line before "Legacy adapters advertise". ## What Changed - Add one blank line in `packages/paperclip-runner/README.md` before the legacy-adapter paragraph. ## Verification - `git diff --stat`: one file, one line added. - I read the changed section. The legacy-adapter text now starts its own paragraph. - No code changed, so no tests are necessary. ## Risks - Low risk. This is a documentation-only change. - The Runner build-input digest includes every file in `packages/paperclip-runner`. This change therefore changes that digest, and the next release builds a new Runner image. The Runner behavior does not change. ## Model Used - Claude Opus 5.5 (`claude-opus-5-5`) in Claude Code, with tool use (shell, file editing). ## Checklist - [x] I have included a thinking path that traces from project context to this change - [x] I have specified the model used (with version and capability details) - [x] I have checked ROADMAP.md and confirmed this PR does not duplicate planned core work - [x] I have searched GitHub for duplicate or related PRs and linked them above - [x] I have either (a) linked existing issues with `Fixes: #` / `Closes #` / `Refs #` OR (b) described the issue in-PR following the relevant issue template - [x] I have not referenced internal/instance-local Paperclip issues or links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip` URLs) - [x] My branch name describes the change (e.g. `docs/...`, `fix/...`) and contains no internal Paperclip ticket id or instance-derived details - [x] I have run tests locally and they pass - [x] I have added or updated tests where applicable - [x] I have updated relevant documentation to reflect my changes - [x] I have considered and documented any risks above - [x] All Paperclip CI gates are green - [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups - [x] I will address all Greptile and reviewer comments before requesting merge 🤖 Generated with [Claude Code](https://claude.com/claude-code) Co-authored-by: Claude Opus 5.5 <noreply@anthropic.com>	2026-11-07 06:38:14 +00:00
DottaandClaude Opus 5.5	464e6e16e0	fix(native): resume copyback after a restart kills its same-host owner; one board action otherwise (#19717 ) ## Thinking Path > - Paperclip is the open source app people use to manage AI agents for work > - Native runs save the agent's workspace files after the provider turn finishes (copyback) > - One controller owns copyback at a time. The run records that owner in `runnerProfileJson.nativeWorkspaceFinalizationOwner` (host, PID, token) > - A control-plane restart can kill the controller during copyback. The dead controller can never confirm its own stop > - Recovery then waited for a board confirmation. No surface offered that confirmation, so the run stayed `running` and the task stayed `in_progress` with no visible action > - This pull request lets the next controller on the same host prove the stop by itself. It also gives the board one clear action when that proof is not possible > - The benefit is that a restart during copyback resumes by itself, and a task never waits silently for a person ## Linked Issues or Issue Description What happened? In a Daytona restart-chaos wave, a kill during workspace copyback left the run `running` and its task `in_progress`. Recovery reported `native_workspace_finalization_owner_unverified`. The run was still `running` when the wave timed out. Steps to reproduce 1. Start a native remote (sandbox) run. 2. Kill the control-plane process (SIGKILL) after the provider result is accepted, during copyback. 3. Restart the control plane on the same host. Expected behavior If the previous controller and its copyback children are proven stopped on this host, recovery resumes copyback without a new agent turn. Otherwise, the task shows one board action to confirm that the previous server stopped. Actual behavior The recorded owner was cleared only by `resumeNativeWorkspaceAfterOwnerStop`. Same-host recovery also required a completed-copyback barrier, which an interrupted copyback never has. The task presentation showed `working`, and the UI had no control for the confirmation. Refs #19578 (boot-ID fencing for unstarted runs; same proof style). ## What Changed - Root cause: `server/src/services/native-runtime/native-workspace-finalization-ownership.ts` sent a dead same-host owner to `requireStopVerification` when no `workspace_finalize` operation had succeeded. That case is exactly a restart during copyback. - New `native-workspace-owner-stop-proof.ts`. The owner receipt now records the controller's process group (`processGroupId`). Copyback children (tar, Git) are not detached, so they keep that group. A successor on the same host releases the receipt only when the receipt names another controller boot, the PID is dead or recycled (process start time), and the group is empty or has no member outside the successor's own process tree that started after the old controller. Age alone never proves a stop. - A still-live group member returns `local_stop_pending`. The finalization worker rechecks it on its existing ownership recheck interval. The board action stays visible meanwhile. - A successful local proof writes `issue.workspace_owner_stop_verified` with the proof and marks the recovery `resuming`, like the existing platform proof. - A receipt from another host, a receipt without a process group, or a host without `ps` keeps the fence. The task interruption is now `waiting_for_user` with `userAction: "confirm_owner_stop"` (new shared enum value), not `working`. - UI: the task chat shows one Confirm the previous server stopped action. It asks for stop evidence and calls the existing `resume-workspace-finalization` API. It is shown only to roles that hold `runtime:confirm_owner_stop` (company owner or administrator, local board, instance administrator). The inbox names the same action. - The copyback advisory lock, the coordinator finalization lease, and remote save fencing are unchanged. - Docs: `doc/native-workspace-finalization-recovery.md`. ## Verification - Red then green on embedded Postgres (`server/src/services/native-runtime/native-workspace-finalizer.test.ts`): - same-host controller killed with SIGKILL, its process group empty: before `owner_unverified`, after `acquired` with the proof logged and no agent wake - a non-detached orphan child of the dead controller still runs: `local_stop_pending`, no copyback; after the child exits, `acquired` - a receipt without a process group: still `owner_unverified` - a foreign-host owner: the task presentation was `working` (red), now `waiting_for_user` / `confirm_owner_stop`; after the board confirmation it is `working` again - The existing orphan test (a detached child) and all other finalizer tests pass: `npx vitest run src/services/native-runtime/native-workspace-finalizer.test.ts src/__tests__/native-workspace-finalization-work.test.ts src/services/task-interruption-presentation.test.ts` (135 passed). - UI: `npx vitest run src/components/WorkspaceExportRecovery` (34 passed), including the action call body and the non-administrator case. - `pnpm check:token-gates` clean. Server and UI typecheck clean for the changed files. - Live Daytona restart-chaos wave: results are added in a comment below. ## Risks - A process-table check that reports a member wrongly as live only keeps the existing fence. The board action is still available. - A subreaper that adopts orphans does not change their process group, so the proof does not depend on the parent PID. - A child that a future change spawns with `detached: true` would leave the group. Copyback paths do not do that today. The existing detached-orphan test still fails closed, because a receipt without a process group is not released. - Old receipts have no process group. They keep the board action. ## Model Used - Claude Opus 5.5 (`claude-opus-5-5`), Anthropic, used through Claude Code with tool use (shell, file edits, test runs). ## Checklist - [x] I have included a thinking path that traces from project context to this change - [x] I have specified the model used (with version and capability details) - [x] I have checked ROADMAP.md and confirmed this PR does not duplicate planned core work - [x] I have searched GitHub for duplicate or related PRs and linked them above - [x] I have either (a) linked existing issues with `Fixes: #` / `Closes #` / `Refs #` OR (b) described the issue in-PR following the relevant issue template - [x] I have not referenced internal/instance-local Paperclip issues or links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip` URLs) - [x] My branch name describes the change (e.g. `docs/...`, `fix/...`) and contains no internal Paperclip ticket id or instance-derived details - [x] I have run tests locally and they pass - [x] I have added or updated tests where applicable - [x] I have updated relevant documentation to reflect my changes - [x] I have considered and documented any risks above - [ ] All Paperclip CI gates are green - [ ] Greptile is 5/5 with no open P2s, recommendations, or follow-ups - [x] I will address all Greptile and reviewer comments before requesting merge 🤖 Generated with [Claude Code](https://claude.com/claude-code) --------- Co-authored-by: Claude Opus 5.5 <noreply@anthropic.com>	2026-11-06 23:31:07 -06:00
DottaandClaude Opus 5.5	fc7e3a6503	fix(recovery): never replace a native session after a deterministic refusal (#19733 ) ## Thinking Path > - Paperclip is the open source app people use to manage AI agents for work > - Native agent runs keep a saved provider session, and same-run recovery resumes it after a failure > - When resume fails and the checkpoint allows it, recovery archives the saved continuity state and opens a fresh replacement session > - Recovery used that path for every resume failure, including deterministic refusals that left the saved state unchanged and repeat on every retry > - In five staging tasks a refusal (a protected launch argument, or a predecessor tool call with no result) escalated into a replacement. The remote archive move failed part way, the next attempt found no runner state, and each task was blocked for workspace repair > - This pull request stops before replacement after a closed-class refusal, keeps the saved state, and hands the run to an operator with a named reason > - The benefit is that a deterministic refusal can no longer damage saved state or open a replacement over an unsettled external action ## Linked Issues or Issue Description Refs #19659, Refs #19516, Refs #19334 What happened? Five Codex tasks on Daytona sandboxes failed on staging. The first attempt failed with a deterministic refusal: - `run.attach cannot change protected launch arguments` (four tasks, fixed separately in #19659), or - `native_runner_source_semantic_reconciliation_required` with a predecessor `paperclip_call_assigned_tool` call still pending (one task). The same-run retry then opened a replacement session. `archiveContinuityState` failed with `runner_continuity_break_archive_failed` and no detail. The third attempt failed with `runner_remote_state_unavailable: exit=1`, and the task was blocked with "Workspace repair required". Steps to reproduce 1. Save a native session whose checkpoint policy is `allow_replacement_after_resume_failure`. 2. Make the resume fail with a refusal that does not change state (an attach refusal, or a pending tool call). 3. Same-run recovery opens a replacement session and archives the saved continuity state. Expected behavior A deterministic refusal stops the run for an operator. The saved state stays intact. A run with a pending side-effecting call never reaches replacement. Transport drops keep the existing retry behavior. Root cause `executeNativeSession` checked only the checkpoint's replacement policy. The closed failure class (#19334) only had an effect when replacement was forbidden. Attach refusals and pending tool calls had no class at all, and the source-reconciliation refusal was a plain `Error`. ## What Changed - Runner (`provider_backend.rs`, `durable/mod.rs`): `run.attach` refusals that would change the durable Codex profile or a protected launch argument carry the closed classification `provider_attach_refused`. An attach blocked by `durable_pending_tool_calls` carries `provider_side_effect_pending`. These refusals already leave the saved state unchanged. - Contracts (`harness-driver.ts`): new closed classes `PROVIDER_ATTACH_REFUSED` and `PROVIDER_SIDE_EFFECT_PENDING`. A typed `NativeRunnerSourceReconciliationRequiredError` replaces the plain `Error` at the five `native_runner_source_*_reconciliation_required` throw sites. `runnerRecoveryFailureClass` reads the authenticated command-result classification or the typed error, never message text. - Runtime (`native-session-runtime.ts`): after either class, recovery never opens a replacement session, whatever the checkpoint policy. - An attach refusal ends with the existing `NativeProviderStateIncompatibleError`, which maps to the existing operator path `native_provider_state_incompatible`. - A pending side effect ends with the new `NativeProviderSideEffectPendingError`. - Server (`native-session-executor.ts`, `native-session-resume.ts`, shared `EXECUTION_RECONCILIATION_CAUSES`): `native_provider_side_effect_pending` is a permanent failure and an execution-reconciliation cause, so the board gets a reconciliation (record whether the action ran) instead of a generic Retry. The reconciled continuation does not rebind the saved session, which still refuses attachment. It starts a fresh provider session in the same workspace. The saved session and workspace are unchanged. - Archive (`archiveContinuityState`): a failed remote move now records the bounded (512 characters), redacted exit status and output in `runner_continuity_break_archive_failed: exit=… timedOut=… <output>`. The remote move already ran before the local move on `master`, so a failed remote move leaves the local state in place. `restart-interrupted-turn.ts` accepts the detailed message for its reattachment-loss retry. - Docs: `doc/execution-semantics.md` and `packages/paperclip-runner/docs/durable-recovery.md` describe the new rule. ## Verification Red before the fix, green after (each test first run against unchanged source from `origin/master` `644ee66f5d`): - `native-session-runtime.test.ts`, test "never replaces a session after a deterministic, non-destructive recovery refusal". Red: replacement was attempted (`TypeError: Invalid value used as weak map key` from the stub replacement). Green: typed error, and `openReplacementSession`, `openSession` and `openRun` are not called. - `harness-driver-backend.test.ts`, test "keeps the runner's closed class of a failed recovery". Red: the typed error did not exist. Green: both new classes are read from the command result and from the typed error. The same message text without the type stays unclassified. - `tests/codex_provider.rs` (real durable executor and fake Codex app-server): - `attach_with_a_pending_tool_call_is_classified_as_a_pending_side_effect`. Red: `left: None, right: Some("provider_side_effect_pending")`. - `saved_codex_thread_attaches_after_a_release_changes_its_feature_toggles` (protected sandbox change). Red: `left: None, right: Some("provider_attach_refused")`. - `native-session-executor.test.ts`: - Test "stops same-run retries for an operator while a saved side-effecting call has no result". Red: `expected 'native_session_interrupted' to be 'native_provider_side_effect_pending'`. - Test "retains the local controller checkpoint until remote continuity archiving succeeds: failed/timeout". Red: the message had no detail. Green: the message has the exit status and output, a token in the output is redacted, and the local runner and control-plane files are intact. Safety and regression checks: - New test "still replaces a session after an unclassified resume failure when the checkpoint allows it". It passes before and after: a transport drop still reaches replacement. - Existing test "types a runner-proven incompatible session when same-session recovery is required" still passes. - `native-session-resume.test.ts`: a source stopped with `native_provider_side_effect_pending` is not rebound. - `run-completion.test.ts` "replays saved user intent through normal Retry …" passes with the detailed archive message. - Runner Vitest: `native-session-runtime.test.ts` and `harness-driver-backend.test.ts` (266 passed); `runnerd-codex-transport-warm-attachment.test.ts` and `codex-app-server-driver.recovery.test.ts` (74 passed). - Rust: `--lib` (560 passed, plus one ACPX timing test that failed under load and passed when rerun alone), `codex_provider` (118 passed), `native_provider_backend` (45 passed), `durable_recovery` (3 passed). Not run: a live staging recovery at this revision. The local server typecheck could not resolve the unbuilt runner package, so required CI provides typecheck. ## Risks - A run that a replacement session would have continued after an attach refusal now stops for an operator. The refusal repeats on every retry, so the replacement was the only way past it. It also destroyed saved state, which is what blocked the staging tasks. A board Retry still continues the task in a fresh session in the same workspace. This is the existing `native_provider_state_incompatible` behavior. - A new failure code `native_provider_side_effect_pending` appears in run records and recovery actions. It joins `EXECUTION_RECONCILIATION_CAUSES`, so the UI shows the reconciliation flow, not Retry. - An attach refusal used to reach an automatic replacement; it now needs one board Retry. This is intended: the replacement archived saved state and failed part way on staging. - The pending-side-effect class means "no result delivered to the runner". The controller replays a recorded tool outcome only after attach. A call whose outcome the server already recorded therefore also stops for an operator. That is conservative; the reconciliation shows the recorded outcome. - Only a pending tool call classifies an attach blocker. Other blockers (active turn, ambiguous turn start, active goal) keep their current behavior. - The archive error message is longer. The one exact-match consumer now accepts the `code: detail` form. ## Model Used - Claude Opus 5.5 (`claude-opus-5-5`), Anthropic, used through Claude Code with tool use (shell, file edit, browser reads of staging). ## Checklist - [x] I have included a thinking path that traces from project context to this change - [x] I have specified the model used (with version and capability details) - [x] I have checked ROADMAP.md and confirmed this PR does not duplicate planned core work - [x] I have searched GitHub for duplicate or related PRs and linked them above - [x] I have either (a) linked existing issues with `Fixes: #` / `Closes #` / `Refs #` OR (b) described the issue in-PR following the relevant issue template - [x] I have not referenced internal/instance-local Paperclip issues or links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip` URLs) - [x] My branch name describes the change (e.g. `docs/...`, `fix/...`) and contains no internal Paperclip ticket id or instance-derived details - [x] I have run tests locally and they pass - [x] I have added or updated tests where applicable - [x] I have updated relevant documentation to reflect my changes - [x] I have considered and documented any risks above - [x] All Paperclip CI gates are green - [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups - [x] I will address all Greptile and reviewer comments before requesting merge 🤖 Generated with [Claude Code](https://claude.com/claude-code) --------- Co-authored-by: Claude Opus 5.5 <noreply@anthropic.com>	2026-11-06 23:25:54 -06:00
Dotta Paperclip Codex	839d41aabb	fix(server): retire owned plugin listeners before idle sleep (#19358 ) ## Thinking Path > - Paperclip is the open source app people use to manage AI agents for work. > - Plugins receive durable agent lifecycle events through a registered host. > - The host uses a PostgreSQL LISTEN connection to wake delivery. > - An idle report could return `none` while that host-owned connection stayed open. > - This change gives that listener an exclusive owner and closes it during the current idle hold. > - Release or expiry restores listening before journal replay. > - Failed close and pending work continue to block sleep. ## Linked Issues or Issue Description Refs #18988, which is now merged. This focused ten-file change now targets master. Current integrated candidate: `0f83005122ef1bdb1f1e08f8f58424c9a840ebb1`, with actual master `644ee66f5d4ae8365fe8b9eca57df2be7405b5ab` preserved through normal merges. No history was rewritten. What happened? A normal local App with an installed lifecycle plugin could return an idle `none` report while its lifecycle LISTEN backend and socket stayed open. Expected behavior The host must close its own listener before it reports idle safety. It must retain other subscriptions, durable events, company scope, retry deadlines and useful reactivation. Steps to reproduce Start the normal server with a lifecycle plugin. Create an agent and wait for its durable acknowledgment. Stop the server, create another agent while it is stopped, and restart with the same files. Request an owned idle hold after ordinary replay. Check the exact listener backend and matched Node socket before shutdown. Let the valid hold expire naturally, then make an ordinary authorized agent update and check its durable plugin acknowledgment. Live executing or persistent preview services remain active. The separate hosted preview dependency [paperclip-cloud#478](https://github.com/paperclipai/paperclip-cloud/pull/478) retains its own App and operator prerequisites. This PR does not claim deployed preview or suspension acceptance. ## What Changed - Add a private, exclusive database listener owner that inherits the normal client policy. - Prepare plugin lifecycle retirement after native retirement under the same current idle hold. - Use one delivery-eligibility helper for dispatch and idle journal inspection. It preserves the same manifest, capability, company-disable query, and skip rules. - Close only the owned listener. Keep failed close ownership and inspection failures visible. - Resume listening on normal release or expiry, before journal replay. - Preserve disabled-feature retry history and the original deadline on re-enable. - Await lifecycle disposal during normal shutdown and consumer teardown. - Add owner regressions and document the lifecycle contract. ## Verification Current integrated source: `0f83005122ef1bdb1f1e08f8f58424c9a840ebb1`. Fresh normal Runner TypeScript passed in 0.785 seconds. The complete normal App layered semantic check passed in 28.284 seconds. All tracked source, the lockfile and the 18 separate private witness inputs stayed unchanged. Known compiler owners closed and the isolated temporary home was removed. Current product qualification: at measured integration `896cc9b62993e6ed10418d7a7417e1ddbf8dc89c`, all three whole files passed with no failures or skips: lifecycle delivery 40, runtime hooks 20, and runtime assignments 24. The actual physical LISTEN and natural-expiry controls passed. All owned clients and captured processes closed. Independent final session checks were zero before normal deletion of each successful test database. Normal full-App physical retirement: the original case passed in 47.574 seconds. It exercised real startup, readiness, SDK callbacks, durable ACK, foreign-company exclusion, physical stop, offline input and cold replay. The initial unknown hold and its ordinary release remain in the evidence. After the original 30.5-second cadence, a new valid hold returned quiescent. The exact current cold-App LISTEN backend and its matched Node socket closed before server stop. Normal full-App natural expiry: the separate original case passed in 77.391 seconds under its original 90-second body cap. The final valid 30-second hold expired naturally. A new listener backend and matched current App socket appeared before fresh input. An ordinary authorized agent-name PATCH produced journal event 20, the actual SDK callback and durable ACK. Foreign exclusion and readiness assertions passed. The final measured hold had no manual release, replacement hold or shortened TTL. The original preparatory unknown hold, ordinary release and 30.5-second cadence remain explicit. Both App cases used the normal current server helpers and actual SDK bundling/worker entry. A private compatibility change supplied the same owned HOME at the exact existing child-fork boundary. It did not change the product helpers, business assertions or timing limits. These separate acceptance fixtures remain outside the focused product diff. Source carry to the current candidate: all nine other owned files, listener mechanics, actual producer paths, SDK paths and measured hold behavior are unchanged. The sole owned intersection from newer master is an independent environment-delete cleanup callback in `app.ts`. The plugin witnesses do not call that route. Normal merges preserve every unrelated master blob and file mode. The fresh current semantic checks above qualify the integrated source. New master Native crash-recovery and saved-copyback Retry capabilities are not claimed by these plugin cases. Actual master merge target: newer master contains retained plugin Runner release/resume and other Native recovery fixes. The projected combined target passed fresh normal Runner TypeScript in 0.799 seconds and the full App semantic check in 29.715 seconds. All ten plugin-owned blobs and modes remain exact to the published head; every unrelated master change is preserved. The measured plugin cases create no Native provider turn or warm Native session. The unchanged native-first/plugin-second ordering still checks the native result before listener retirement. Later sparse-checkpoint and Native response-publication changes do not enter those paths. This is a scoped source carry, not new hosted Runner acceptance. Failures retained: an earlier reactivation fixture's real timer returned one millisecond before its original wall-clock expiry. Its private fixture now waits any positive remainder and retains the same expiry assertion and limits. The earlier partial-composition `unknown` result remains distinct from normal-startup proof. Current qualification also exposed missing normal workspace dependencies and a private guard that assumed loose Git refs. Normal owned dependency setup and an exact loose-or-packed reader fixed those setup failures. No business assertion, timeout, permission boundary or product sleep gate was relaxed. Repeat focused product coverage with a fresh external fixture database and the normal server Vitest command, one worker: ```sh pnpm --filter @paperclipai/server exec vitest run src/__tests__/plugin-lifecycle-delivery.test.ts --maxWorkers=1 --no-file-parallelism pnpm --filter @paperclipai/server exec vitest run src/__tests__/agent-runtime-hooks.test.ts --maxWorkers=1 --no-file-parallelism pnpm --filter @paperclipai/server exec vitest run src/__tests__/agent-runtime-assignments.test.ts --maxWorkers=1 --no-file-parallelism ``` Exact current head `0f83005122ef1bdb1f1e08f8f58424c9a840ebb1` has 60 successful checks, three skips and one neutral result, with no pending or failing contexts. Greptile completed its full review at 5/5 with no actionable issue. All root and nested review pages were read; the earlier eligibility finding is resolved. Ponytail's latest turn stopped before a verdict. A normal retry was requested; no current Ponytail verdict or score is claimed. Previous `3ca86ec` CI and scores are historical. A full local repository typecheck/test/build or browser run is not claimed. Controlled local App/SDK/PostgreSQL proof does not establish live provider, deployed Railway/Neon suspension, signed Cloud alarms or global exactly-once delivery. ## Risks - A listener close failure or uncertain inspection must continue to block sleep. - Release, expiry, configuration changes, and journal arrival can race with retirement. Epoch and current-hold checks retain conservative results. - Delivery remains at least once across uncertain ACK boundaries. This change does not add global exactly-once delivery. - The database helper closes only its exclusive listener client. Other owners and subscriptions keep their resources. ## Model Used OpenAI `gpt-6.1-sol`, reasoning and code/tool use. The managing Codex agent implemented shared database/composition seams and reviewed the change; its exact model ID was not exposed. The runtime does not expose a verified context-window size. ## Checklist - [x] I have included a thinking path that traces from project context to this change - [x] I have specified the model used (with version and capability details) - [x] I have checked ROADMAP.md and confirmed this PR does not duplicate planned core work - [x] I have searched GitHub for duplicate or related PRs and linked them above - [x] I have either (a) linked existing issues with `Fixes: #` / `Closes #` / `Refs #` OR (b) described the issue in-PR following the relevant issue template - [x] I have not referenced internal/instance-local Paperclip issues or links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip` URLs) - [x] My branch name describes the change (e.g. `docs/...`, `fix/...`) and contains no internal Paperclip ticket id or instance-derived details - [x] I have run tests locally and they pass - [x] I have added or updated tests where applicable - [x] I have updated relevant documentation to reflect my changes - [x] I have considered and documented any risks above - [x] All Paperclip CI gates are green - [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups - [x] I will address all Greptile and reviewer comments before requesting merge --------- Co-authored-by: Paperclip <noreply@paperclip.ing> Co-authored-by: Codex <noreply@openai.com>	2026-11-06 22:56:47 -06:00
DottaandClaude Opus 5.5	c45c7cb854	fix(workspaces): ignore killed-transfer scratch in sparse checkpoints (#19730 ) ## Thinking Path > - Paperclip is the open source app people use to manage AI agents for work > - A native run in a remote sandbox copies its workspace back to the host after the turn. A sparse checkpoint copies only changed entries, and the host validates each entry against the sandbox's own manifest > - Every Daytona transfer stages a `.paperclip-upload-<uuid>` scratch file at the sandbox workspace root and removes it only in the same process > - A control-plane kill during any transfer leaves that scratch behind. The sparse checkpoint then recorded it as a workspace file, but providers never export it. Every later copyback and every saved-work recovery attempt failed with "Workspace checkpoint payload mismatch" > - The failed recovery then left an accepted Retry showing "Paperclip is finishing the saved result" with no run > - This pull request stops recording transfer scratch, makes the checkpoint export an exact copy, names the failing entry, and gives a Retry behind a spent recovery an honest reason and a working action > - The benefit is that a restart during a transfer no longer makes a task's saved work permanently unrecoverable ## Linked Issues or Issue Description Refs #19721 (RC-50: the killed copyback owner; this PR covers the separate RC-50b cause) What happened? Restart-chaos waves s12/t01 and s14/t05 (Claude on Daytona). After a SIGKILL of the control plane, the native result was accepted, and then workspace copyback failed with "Workspace checkpoint payload mismatch". In s14 all 6 saved-work recovery attempts failed the same way. A Retry accepted during recovery kept `retryWait.reason = finalizing_saved_result` after the recovery budget was spent. No run was created. Steps to reproduce 1. Start a native Claude run in a Daytona sandbox. 2. SIGKILL the control plane while any provider transfer is in flight. 3. Let the run finish its turn and copy its workspace back. Expected behavior Copyback succeeds. Provider scratch is not workspace content. A Retry behind a spent recovery names the failure and can start a new recovery. Actual behavior The s14 sandbox (6f4a0b6a) still held `/home/daytona/paperclip-workspace/.paperclip-upload-d99fe36b-5acc-437b-96ad-85d5ff9e79c4.tar`. Its mtime was 03:29:23, the second of the K4 SIGKILL. The Daytona provider stages transfer scratch at `remoteDir`, which is the lease `remoteCwd` (the workspace root). The runtime workspace wipe deliberately preserves `.paperclip-upload-`. The checkpoint helper (`workspace-checkpoint.ts`, `checkpointMain`) recorded the stale tar. The ordinary export excludes `.paperclip-upload`, so the host received nothing for that entry. `validateCheckpointPayload` then threw "payload mismatch" on every attempt. The file-mode hypothesis was disproved: the sandbox umask is 022 and the scratch is mode 644. ## What Changed - `packages/adapter-utils/src/exclude-patterns.ts`: new `isSandboxTransferScratchPath`, which matches a root-level `.paperclip-upload-` entry. This agrees with the wipe's preserve rule in `buildWorkspaceTarExtractCommand`. - `packages/adapter-utils/src/workspace-checkpoint.ts`: the sandbox checkpoint helper skips that scratch. A mismatch error now names the entry and its recorded, baseline and received forms (kind, octal mode, short hash; never contents). - `packages/adapter-utils/src/sandbox-managed-runtime.ts`: the checkpoint export requests `preserveSourceEntries: true`. The checkpoint output is an exact copy that the host validates entry by entry. An ordinary export applies the host umask and drops `._` and `.paperclip-upload` names at any depth. That gives the same permanent mismatch for a legitimate user file such as `._summary`, `notes/.paperclip-upload-plan.md`, or a `0775` script. - `server/src/services/explicit-native-continuation.ts` and `task-interruption-presentation.ts`: when the run's saved-work recovery is exhausted, a waiting Retry reports `saved_work_recovery_failed` with Retry available, instead of `finalizing_saved_result`. The existing task Retry path starts one new recovery generation. - `doc/execution-semantics.md`: a short additive note. ## Verification - `packages/adapter-utils/src/workspace-checkpoint-capture.test.ts` uses the real checkpoint helper and an export that behaves like Daytona's ordinary export: - Before the fix: `Workspace checkpoint payload mismatch at ".paperclip-upload-d99fe36b-….tar": sandbox recorded file mode=644 …; baseline absent; received absent`. That is the wave error. - After the fix: the scratch is not recorded, and validation passes. - A second case shows that reserved-looking user names and `0775` modes need the exact export. - `packages/adapter-utils/src/workspace-checkpoint.test.ts` is an end-to-end `prepareSandboxManagedRuntime` restore through a provider model. In that model, ordinary exports drop reserved names and apply the umask, and preserve exports copy exactly. Two red checks: - Without `preserveSourceEntries`, it fails with the mismatch on `._summary`. - Without the scratch skip, the stale tar leaks into the host workspace. - Green: the agent file, the `._summary` file and the `0775` mode arrive, and no scratch arrives. - `server/src/services/workspace-recovery-preparation-gates.test.ts`, "names a spent saved-work recovery behind an accepted Retry, and the next Retry finishes it" (s14 shape): - Red: `finalizing_saved_result` after 6 failed attempts. - Green: `saved_work_recovery_failed` with `canRetry: true`. The next Retry starts a new generation, recovery completes, and the Retry continues in exactly one new run. - Suites: adapter-utils checkpoint, capture, sandbox-managed-runtime, seed-reuse and managed-seed (168 passed). Server preparation-gates (47), explicit-native-continuation and task-interruption-presentation (455), workspace-recovery admission and retry-copyback, and native-workspace-finalizer. `tsc --noEmit` is clean for adapter-utils and server. - Live evidence: I started the stopped s14 sandbox read-only, listed its workspace, and stopped it again. No Daytona replay was run. The runner content ID of this checkout matches no built image. ## Risks - A user file named `.paperclip-upload-` directly at the workspace root is no longer captured by a sparse checkpoint. Providers already drop that name from every ordinary export, and the runtime already reserves it at the root. - The checkpoint export now uses the provider's exact-copy mode. A workspace file with setuid, setgid or sticky bits is refused by that mode, as it is for the existing exact-copy transfers. The ordinary export would have stripped those bits and failed validation anyway. - The stale scratch tar stays in the sandbox. It is ignored, not deleted, because a concurrent transfer can own a file with the same prefix. ## Model Used - Claude Opus 5.5 (`claude-opus-5-5`), Anthropic, through Claude Code with tool use (shell, file edits, test runs, embedded Postgres, a read-only Daytona sandbox listing). ## Checklist - [x] I have included a thinking path that traces from project context to this change - [x] I have specified the model used (with version and capability details) - [x] I have checked ROADMAP.md and confirmed this PR does not duplicate planned core work - [x] I have searched GitHub for duplicate or related PRs and linked them above - [x] I have either (a) linked existing issues with `Fixes: #` / `Closes #` / `Refs #` OR (b) described the issue in-PR following the relevant issue template - [x] I have not referenced internal/instance-local Paperclip issues or links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip` URLs) - [x] My branch name describes the change (e.g. `docs/...`, `fix/...`) and contains no internal Paperclip ticket id or instance-derived details - [x] I have run tests locally and they pass - [x] I have added or updated tests where applicable - [x] I have updated relevant documentation to reflect my changes - [x] I have considered and documented any risks above - [ ] All Paperclip CI gates are green - [ ] Greptile is 5/5 with no open P2s, recommendations, or follow-ups - [ ] I will address all Greptile and reviewer comments before requesting merge 🤖 Generated with [Claude Code](https://claude.com/claude-code) Co-authored-by: Claude Opus 5.5 <noreply@anthropic.com>	2026-11-06 22:46:16 -06:00
DottaandClaude Opus 5.5	d1ee25d0f7	fix(runner): fail a pending Codex turn start at once with the runner's own terminal failure (#19722 ) ## Thinking Path > - Paperclip is the open source app people use to manage AI agents for work > - The control plane starts each Codex turn through runnerd and waits for the turn's start event (`#startTurnWork` in `runnerd-codex-transport.ts`) > - In restart storm 5, runnerd failed an accepted continuation turn before it started (`turn_binding_mismatch`, fixed at its source in #19718) > - The transport held that terminal for the pending start and waited the full 30 s bound > - It then reported "runnerd did not report the provider turn identity", which hid the real cause > - This pull request makes a pending start fail at once with the runner's own terminal failure > - The benefit is a faster failure that names its real cause, so recovery and operators act on the correct fact ## Linked Issues or Issue Description Refs #19718, #19699, #19608 What happened? Restart storm 5 (seed 7106), task t01 (Codex). Runnerd accepted the restart continuation turn. About 0.5 s later it committed a `harness.diagnostic`, a non-recoverable `turn.failed` (`turn_binding_mismatch`) and a failed `run.terminal`. The transport's event pump holds a turn terminal while a turn start is pending, so the start loop never saw it. The start waited 30 s, the #19608 adoption check found no active turn, and the run failed with "runnerd did not report the provider turn identity". Expected behavior When runnerd reports a final failure of the pending turn (a non-recoverable `turn.failed` or a failed `run.terminal`) before the turn starts, the start fails at once. The error names the runner's code and message. Steps to reproduce 1. Use fake Codex with `--foreign-usage-before-turn-started --turn-started-delay-ms 20000`. 2. Start a turn through the runnerd Codex transport. 3. Before this change, `turn/start` rejects after the full bound with "runnerd did not report the provider turn identity". ## What Changed - `runnerd-codex-transport.ts`: new `runnerdPendingTurnStartFailure()`. It finds a non-recoverable `turn.failed` or a failed `run.terminal` among the terminals held for the pending start and the committed events after the cursor. - `#startTurnWork` checks it while it waits for `turn/started`, before the adoption snapshot, and in the post-adoption wait. It throws `runnerd failed the provider turn before it started: <code>: <message>`. - The check runs only when the turn has not started. A recoverable terminal does not trigger it. The #19608 late-start adoption path is unchanged. - Fake Codex: new `--foreign-usage-before-turn-started` flag. It sends usage for a turn the runner does not own right after it accepts a turn. This makes runnerd fail the turn with `turn_binding_mismatch` before it starts. - New test in `runnerd-codex-transport-deadlines.test.ts` with real runnerd and fake Codex. ## Verification - Red before the fix: `npx vitest run src/live/runnerd-codex-transport-deadlines.test.ts` → the new test failed after 16.4 s with "runnerd did not report the provider turn identity". - Green after the fix: the start rejects in under 5 s with `turn_binding_mismatch`, and fake Codex saw exactly one `turn/start`. - The #19608 tests ("adopts a durably accepted turn whose start notification outlives the turn-start bound" and "does not adopt an accepted turn the runner no longer reports active") still pass. - `npx vitest run src/live/runnerd-codex-transport`: 9 files, 399 tests pass. - `pnpm run typecheck` in `packages/paperclip-runner` passes. `cargo test --bin fake-codex-app-server` passes. `cargo fmt` is clean. - `pnpm verify` exits 2 (broad input: the fake Codex binary). Required CI supplies the broad coverage. ## Risks - Low risk. The new failure fires only when runnerd itself already reported a final failure and no turn start was observed. In that state the start could not succeed, and before this change it failed after the bound anyway. - If a provider sends a non-recoverable terminal before its own turn start for a turn that later starts, the start now fails earlier. Codex sends `turn/started` before its terminal, and runnerd's terminal for a protocol failure is final, so I do not expect this. ## Model Used - Claude Opus 5.5 (`claude-opus-5-5`), Anthropic, used through Claude Code with tool use (shell, file editing). Default context window and reasoning mode. ## Checklist - [x] I have included a thinking path that traces from project context to this change - [x] I have specified the model used (with version and capability details) - [x] I have checked ROADMAP.md and confirmed this PR does not duplicate planned core work - [x] I have searched GitHub for duplicate or related PRs and linked them above - [x] I have either (a) linked existing issues with `Fixes: #` / `Closes #` / `Refs #` OR (b) described the issue in-PR following the relevant issue template - [x] I have not referenced internal/instance-local Paperclip issues or links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip` URLs) - [x] My branch name describes the change (e.g. `docs/...`, `fix/...`) and contains no internal Paperclip ticket id or instance-derived details - [x] I have run tests locally and they pass - [x] I have added or updated tests where applicable - [x] I have updated relevant documentation to reflect my changes - [x] I have considered and documented any risks above - [ ] All Paperclip CI gates are green - [ ] Greptile is 5/5 with no open P2s, recommendations, or follow-ups - [x] I will address all Greptile and reviewer comments before requesting merge 🤖 Generated with [Claude Code](https://claude.com/claude-code) Co-authored-by: Claude Opus 5.5 <noreply@anthropic.com>	2026-11-06 21:48:29 -06:00
DottaandClaude Opus 5.5	42f6b3a870	fix(runner): keep a restart-lost Codex turn's late usage from failing its continuation (#19718 ) ## Thinking Path > - Paperclip is the open source app people use to manage AI agents for work > - Native Codex runs continue a turn lost to a control-plane restart once, in the same conversation (#19699) > - In restart storm 5, a Codex run crossed one graceful restart. The continuation started, but the task stopped and needed a Retry > - The runner log shows the cause. The resumed Codex thread sent the usage of the lost turn after it accepted the continuation turn. The runner rejected that usage as `turn_binding_mismatch` and failed the run > - Recovery marks the lost turn as settled in the durable ledger. It does not tell the live Codex provider, so the provider treats the old turn's usage as a foreign event > - This pull request records the lost turn as settled in the live provider too > - The benefit is that a restart-lost Codex turn continues without a Retry ## Linked Issues or Issue Description Refs #19699, #19608, #19501, #15297 What happened? Restart storm 5 (seed 7106). Task t01 (Codex, B5) crossed one K2 SIGTERM restart. Recovery resumed the dead runner. Runnerd restored the conversation and recorded `turn.failed` with `provider_turn_lost_on_restore` (recoverable). The control plane started the continuation (#19699). Runnerd accepted it as a new provider turn. About 0.5 s later, Codex sent `thread/tokenUsage/updated` for the lost turn id. The runner's durable state records these events: - `turn.accepted` for the new turn `01a1b3e2-…` - `harness.diagnostic` `turn_binding_mismatch`, method `thread/tokenUsage/updated`, `expectedTurnId` = new turn, `receivedTurnId` = lost turn `01a1b3e0-…` - `turn.failed` (`recoverable: false`) and `run.terminal` failed The control plane did not see `turn/started` and failed after 30 s with "runnerd did not report the provider turn identity". The task needed a manual Retry. Expected behavior Usage for the lost turn is history. The runner keeps it as a resume usage snapshot. The continuation runs, and the task continues without a Retry. Steps to reproduce 1. Start a Codex turn through the durable runner. 2. Kill the runner while the turn is active. Restore so that the provider reports no active turn (`provider_turn_lost_on_restore`). 3. Start the continuation turn. Let the provider send `thread/tokenUsage/updated` for the lost turn after it accepts the new turn. 4. Before this change, the runner fails the continuation with `turn_binding_mismatch`. ## What Changed - `provider_backend.rs`: when recovery finds that the previous active turn ended while the runner was offline, it now also restores that turn id into the live provider's settled-turn set. The durable ledger already settled it. The existing settled-turn path then turns its late usage into `paperclip/resumeUsageSnapshot` and does not bill its `last` usage to the run. - The code skips this step when the settled-turn epoch needs a rollover, the same as the durable ledger. - Fake Codex: new `--stale-usage-after-turn-start` flag. With durable turn ids, it sends usage for the previous turn right after it accepts the next turn, before `turn/started`. This matches the live Codex order. - New test `restart_continuation_ignores_late_usage_for_the_turn_lost_on_restore` in `tests/codex_provider.rs`. It uses the real durable Codex executor with fake Codex. ## Verification - Red before the fix: `cargo test -p paperclip-runner-core --test codex_provider restart_continuation_ignores_late_usage` failed with the same diagnostic as the live run (`turn_binding_mismatch`, method `thread/tokenUsage/updated`, `receivedTurnId: provider-turn-1`, `expectedTurnId: provider-turn-2`). - Green after the fix: the same test passes. The continuation emits `turn.started` for `provider-turn-2`, there is no `turn.failed` or `run.terminal`, and fake Codex saw exactly two `turn/start` calls (the original and one continuation). - `cargo test -p paperclip-runner-core`: all suites pass. `acpx_park_readiness::hosted_park_acpx_preserves_late_goals_and_rejects_foreign_or_busy_observations` failed once and passed on rerun. This change does not touch ACPX. - `cargo fmt --check` is clean. - Not run: the live restart-chaos replay of `w-20261107T023921-s7106/t01`. The local harness needs provider credentials that were not available to this session. ## Risks - Low risk. The change adds one already-ended turn id to the live provider's settled set. That set is only used to ignore stale events and to reject reuse of a settled id. So a provider that later reports the lost turn id as a new active turn is now rejected, as the durable ledger already does. - The change does not address a second, separate problem: after the runner failed the continuation, the control-plane transport waited the full 30 s turn-start bound and reported "runnerd did not report the provider turn identity" instead of the runner's `turn_binding_mismatch`. That message only applies when such a failure occurs. This PR removes this specific trigger. ## Model Used - Claude Opus 5.5 (`claude-opus-5-5`), Anthropic, used through Claude Code with tool use (shell, file editing). Default context window and reasoning mode. ## Checklist - [x] I have included a thinking path that traces from project context to this change - [x] I have specified the model used (with version and capability details) - [x] I have checked ROADMAP.md and confirmed this PR does not duplicate planned core work - [x] I have searched GitHub for duplicate or related PRs and linked them above - [x] I have either (a) linked existing issues with `Fixes: #` / `Closes #` / `Refs #` OR (b) described the issue in-PR following the relevant issue template - [x] I have not referenced internal/instance-local Paperclip issues or links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip` URLs) - [x] My branch name describes the change (e.g. `docs/...`, `fix/...`) and contains no internal Paperclip ticket id or instance-derived details - [x] I have run tests locally and they pass - [x] I have added or updated tests where applicable - [x] I have updated relevant documentation to reflect my changes - [x] I have considered and documented any risks above - [ ] All Paperclip CI gates are green - [ ] Greptile is 5/5 with no open P2s, recommendations, or follow-ups - [x] I will address all Greptile and reviewer comments before requesting merge 🤖 Generated with [Claude Code](https://claude.com/claude-code) Co-authored-by: Claude Opus 5.5 <noreply@anthropic.com>	2026-11-06 21:17:38 -06:00

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