Commit Graph
100 Commits
Author SHA1 Message Date
Nicky LeachandPaperclip 4310b0c947 refactor(server): remove unreachable task-drain compensation paths (#12511)
## Thinking Path

> - Paperclip is the open source app people use to manage AI agents for
work.
> - The task-drain service controls when task execution can start and
stop.
> - The service had compensation paths for states that its validators or
recovery process already handle.
> - These paths added rollback state and a stuck-claim marker without
improving normal drain behavior.
> - This pull request removes the unreachable TTL clamp, audit rollback,
generation counter, and double-fault marker.
> - The result keeps input validation, audit ordering, atomic release,
and orphan recovery.

## Linked Issues or Issue Description

**What existing behavior does this improve?**
The task-drain service and its routes manage drain state, audit rows,
and execution locks.

**Subsystem affected**
server/ — REST API and orchestration services.

**Current behavior**
The service clamps a validated TTL value. The routes mutate drain state
before audit writes and then restore state after a failed write. Claim
release also tracks a second durable-write failure with an in-memory
marker.

**Proposed behavior**
The validator remains the single TTL policy. The routes write audit rows
before they mutate drain state. Claim release logs a failed write and
lets the orphan reaper release the issue lock.

**Reason and benefit**
The removed paths cannot handle a valid API request that reaches them.
The rollback can lose the original start time. The marker can keep a
drain non-quiescent until process restart. The simpler flow keeps state
consistent and uses the existing recovery path.

**Breaking changes**
None to the public API. A failed claim release keeps the issue lock
until the next orphan-reaper cycle.

## What Changed

- Remove the service-layer TTL clamp because the shared validator
rejects values above the limit.
- Write task-drain audit rows before drain mutation and remove the
rollback helpers.
- Remove the rollback generation counter and its unused state.
- Remove double-fault stuck-claim tracking and keep the atomic release
path.
- State that the quiescent flag describes work in this process.
- Keep the orphan reaper as the recovery path after a failed claim
release.

## Verification

- Run `pnpm --filter @paperclipai/server test
server/src/__tests__/heartbeat-task-drain-admission-release.test.ts`.
- Run `pnpm --filter @paperclipai/server test
server/src/__tests__/heartbeat-task-drain.test.ts`.
- Run `pnpm --filter @paperclipai/server test
server/src/__tests__/instance-settings-routes.test.ts`.
- Run `pnpm --filter @paperclipai/server test
server/src/__tests__/heartbeat-scheduling-suppression.test.ts`.
- Run `pnpm --filter @paperclipai/server test
server/src/__tests__/execution-lock-orphan-cleanup.test.ts`.
- The five affected test files pass with 70 tests.
- Confirm the full pull request checks pass before merge.

## Risks

The issue lock remains held until the orphan reaper runs after a failed
claim release. This uses the existing recovery path for interrupted
runs. The change does not alter the public API or database schema.

## Model Used

OpenAI Codex, GPT-5, 400K context window, tool use and code execution.

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have searched GitHub for duplicate or related PRs and linked
them above
- [x] I have either (a) linked existing issues with `Fixes: #` /
`Closes: #` / `Refs: #` OR (b) described the issue in-PR following the
relevant issue template
- [x] I have not referenced internal/instance-local Paperclip issues or
links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip`
URLs)
- [x] My branch name describes the change (e.g. `docs/...`, `fix/...`)
and contains no internal Paperclip ticket id or instance-derived details
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [x] All Paperclip CI gates are green
- [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups
- [x] I will address all Greptile and reviewer comments before
requesting merge

---------

Co-authored-by: Paperclip <noreply@paperclip.ing>
2026-08-29 11:43:16 -07:00
Nicky LeachandPaperclip 6154e00f26 feat(server): add a task-drain admission hold to the instance API (#12485)
## Thinking Path

> - Paperclip is the open source app people use to manage AI agents for
work
> - The server admits agent work through heartbeat scheduling and
execution paths
> - Operators need to stop new work before maintenance or a graceful
shutdown
> - A process restart alone does not provide a reusable admission
control primitive
> - This pull request adds an instance API that holds new task admission
and reports process quiescence
> - The benefit is a small, auditable control that lets operators wait
for active work without a restart

## Linked Issues or Issue Description

**Problem or motivation**

Operators cannot hold new task admission without restarting the
Paperclip process. A restart can interrupt maintenance flows and does
not provide a status signal for active work.

**Proposed solution**

Add `GET /instance/task-drain`, `POST /instance/task-drain`, and `DELETE
/instance/task-drain`. The server keeps the drain state in process
memory, applies it to every scheduling suppression path, supports an
optional TTL up to 24 hours, and reports active wake and run counts.

**Alternatives considered**

A timer would clear the drain after its TTL, but it could keep the
Node.js event loop open during shutdown. A database row would add
storage and query work for process-local state. The implementation uses
lazy expiry and process memory instead.

**Roadmap alignment**

The change supports the roadmap goal for enforced outcomes and safe
recovery actions. It does not duplicate a listed roadmap item.

**Additional context**

This is a server and shared-package change. It adds no user interface
and no database migration.

## What Changed

- Add process-local task-drain state with lazy TTL expiry.
- Add task-drain admission suppression to the shared heartbeat resolver.
- Add instance routes to read, start, and stop a task drain.
- Add validation for positive TTL values and the shared 24-hour maximum.
- Add activity records for drain mutations and tests for status, access
control, validation, and suppression.

## Verification

- Run `pnpm exec vitest run --project @paperclipai/server
server/src/__tests__/heartbeat-task-drain.test.ts
server/src/__tests__/instance-settings-routes.test.ts
server/src/__tests__/heartbeat-scheduling-suppression.test.ts`.
- Run `pnpm --filter @paperclipai/shared exec tsc --noEmit`.
- Run `pnpm --filter @paperclipai/server exec tsc --noEmit` and compare
its known pre-existing errors with the base commit.
- Confirm that pull request CI reaches a terminal green state.

## Risks

The drain state exists only in process memory, so a restart clears it.
This behavior matches the process-local design. A drain without a TTL
remains active until an operator calls the delete route. The status
route reads in-memory activity sets and does not query stale database
rows.

## Model Used

OpenAI Codex, GPT-5, extended reasoning with tool use and code
execution. The exact runtime context window is not exposed by the
execution environment.

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have searched GitHub for duplicate or related PRs and linked
them above
- [x] I have either (a) linked existing issues with `Fixes: #` / `Closes
#` / `Refs #` OR (b) described the issue in-PR following the relevant
issue template
- [x] I have not referenced internal/instance-local Paperclip issues or
links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip`
URLs)
- [x] My branch name describes the change (e.g. `docs/...`, `fix/...`)
and contains no internal Paperclip ticket id or instance-derived details
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [x] All Paperclip CI gates are green
- [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups
- [x] I will address all Greptile and reviewer comments before
requesting merge

---------

Co-authored-by: Paperclip <noreply@paperclip.ing>
2026-08-29 08:31:11 -07:00
Nicky LeachandPaperclip a20a4944ec feat: add Grok device login to the sandbox login panel (#12469)
## Thinking Path

> - Paperclip is the open source app people use to manage AI agents for
work
> - Paperclip uses adapters to connect agents and model providers to its
control plane
> - The sandbox login panel supports displayed-code login for selected
adapters
> - Grok users need the same login path and a private credential home
for later runs
> - This pull request adds Grok support to the shared device-login path
and preserves the existing Codex path
> - The benefit is one secure login flow for both adapters with
company-scoped credential storage

## Linked Issues or Issue Description

**Agent or provider**

Grok Local needs displayed-code login support in the sandbox login
panel.

**Why this adapter is useful**

This change lets users sign in to Grok from the sandbox login panel. It
also gives later Grok runs access to the stored credential.

**How the agent is invoked**

The Grok local adapter uses its login command through the shared
displayed-code login flow. Later runs receive the managed home through
`GROK_HOME`.

**Additional context**

The change uses adapter-scoped login lifecycle handling. It stores the
credential in a company-scoped directory with mode `0700`, and it stores
the credential file with mode `0600`.

## What Changed

- Rename the shared device-login modules to adapter-neutral names.
- Scope the shared login lifecycle to a closed adapter set.
- Return the device-login URL that the provider prints.
- Add the Grok prompt parser, login command, capability, and login panel
entry.
- Store the Grok credential in a private, company-scoped home directory.
- Pass `GROK_HOME` to later Grok runs.
- Add tests for the Grok adapter, the Daytona sandbox provider, the
server login path, and the user interface.

## Verification

- Run `pnpm vitest run
packages/adapters/grok-local/src/server/adapter-auth-promotion.test.ts`.
- Run the Grok adapter package suite.
- Run the Daytona sandbox provider suite.
- Run the server device-login suites.
- Run the user interface suite.
- Confirm the full CI suite passes.

## Risks

The change extends shared login lifecycle code to another adapter. A
regression could affect Codex login. The credential path uses explicit
`chmod` calls to keep the directory at mode `0700` and the file at mode
`0600`.

## Model Used

OpenAI Codex, GPT-5. The runtime used tool calls and code review
support. The runtime did not provide a context-window value.

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have searched GitHub for duplicate or related PRs and linked
them above
- [x] I have either (a) linked existing issues with `Fixes: #` / `Closes
#` / `Refs #` OR (b) described the issue in-PR following the relevant
issue template
- [x] I have not referenced internal/instance-local Paperclip issues or
links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip`
URLs)
- [x] My branch name describes the change (e.g. `docs/...`, `fix/...`)
and contains no internal Paperclip ticket id or instance-derived details
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [x] All Paperclip CI gates are green
- [ ] Greptile is 5/5 with no open P2s, recommendations, or follow-ups
- [x] I will address all Greptile and reviewer comments before
requesting merge

---------

Co-authored-by: Paperclip <noreply@paperclip.ing>
2026-08-28 21:48:34 -07:00
Nicky LeachandPaperclip cec675ffca test(server): load the agent-permissions route module graph once per file (#12471)
## Thinking Path

> - Paperclip is the open source app people use to manage AI agents for
work
> - The server test suites verify agent permissions and route behavior
> - The agent-permissions route suite rebuilt its full module graph for
every test
> - CPU load made that repeated work exceed the test timeout and caused
intermittent failures
> - This pull request loads the route module graph once for the file and
resets each mock before every test
> - The benefit is faster, stable test execution with the same test
coverage and isolation

## Linked Issues or Issue Description

**What happened?**

`server/src/__tests__/agent-permissions-routes.test.ts` failed
intermittently in continuous integration. The suite reset modules and
re-imported the route module graph for every test. Under CPU load, one
import took seconds instead of milliseconds and caused an expected
response to become an HTTP 500.

**Expected behavior**

The suite should run all 54 cases without intermittent timeout failures.
Each test should keep isolated mock state.

**Steps to reproduce**

1. Run `npx vitest run
server/src/__tests__/agent-permissions-routes.test.ts`.
2. Repeat the file run under high CPU load.
3. Compare the failure rate and run time before and after this change.

**Paperclip version or commit**

`c4d1af4216f174a92823ca3a20e0717c54371dd5`

**Deployment mode**

Built from source.

**Installation method**

Built from source with pnpm.

**Agent adapter(s) involved**

Not adapter-specific. This change affects a server test suite.

**Database mode**

Not database-related.

## What Changed

- Load the route module graph one time for the describe block with the
existing `hoistModuleGraph` helper.
- Make `createApp` synchronous and read the hoisted graph.
- Remove per-test `vi.resetModules()` and the 26 `vi.doUnmock(...)`
calls.
- Keep stable mock objects and reset each route-facing mock before every
test.
- Keep all 44 `it` blocks and 54 parameterized cases.

## Verification

- `npx vitest run server/src/__tests__/agent-permissions-routes.test.ts`
passes and reports 54 tests.
- `npx tsc --noEmit -p server/tsconfig.json` passes with 0 errors.
- Under 32 concurrent CPU-bound loops, the file passed 15 of 15 runs
after this change, with 54 of 54 cases on each run.
- The same test failed 1 of 15 runs before this change.
- Per-run wall-clock time changed from about 29–34 seconds to about 8–10
seconds.

## Risks

- Low risk. The change affects test setup only.
- The hoisted mock objects keep stable identity, and `beforeEach` resets
every route-facing mock.
- The registration step arms no mock implementations, and the test
adapter still unregisters in a `finally` block.

## Model Used

OpenAI Codex, GPT-5. The runtime provided tool use and code execution.
The runtime did not provide a context window value.

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have searched GitHub for duplicate or related PRs and linked
them above
- [x] I have either (a) linked existing issues with `Fixes: #` / `Closes
#` / `Refs #` OR (b) described the issue in-PR following the relevant
issue template
- [x] I have not referenced internal/instance-local Paperclip issues or
links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip`
URLs)
- [x] My branch name describes the change (e.g. `docs/...`, `fix/...`)
and contains no internal Paperclip ticket id or instance-derived details
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [x] All Paperclip CI gates are green
- [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups
- [x] I will address all Greptile and reviewer comments before
requesting merge

Co-authored-by: Paperclip <noreply@paperclip.ing>
2026-08-28 19:59:23 -07:00
Nicky LeachandPaperclip ad474abece fix(server): load the mocked module graph once in the closed-workspace issue route suite (#12470)
## Thinking Path

> - Paperclip is the open source app people use to manage AI agents for
work
> - The server tests cover issue routes and execution workspace state
> - The closed-workspace route suite reloads a mocked module graph
before each test
> - CPU contention can bind one test to the real service and hide a 500
response
> - This pull request loads the mocked graph once and checks exact
success statuses
> - The benefit is a stable suite that detects route failures instead of
accepting them

## Linked Issues or Issue Description

**What happened?**

The closed-workspace issue route suite reloaded and unmocked the module
graph before each test. Under CPU contention, a route could bind to the
real execution-workspaces service. The request then returned `500`,
while a weak assertion accepted the result.

**Expected behavior**

The suite must use the configured service mocks for every test. Each
success case must assert its exact expected HTTP status.

**Steps to reproduce**

1. Run the closed-workspace route suite many times in parallel.
2. Use CPU contention during the run.
3. Observe intermittent failures or weak assertions that accept `500`
responses.

**Paperclip version or commit**

Commit `0d5686b942f1d1366112cb922f95e5c8622bb9a6`.

**Deployment mode**

Built from source with the server test runner.

**Installation method**

Built from source.

**Agent adapter(s) involved**

Not adapter-specific.

**Database mode**

Not database-related.

**Additional context**

This pull request relates to
[#11472](https://github.com/paperclipai/paperclip/pull/11472). It does
not change product code.

## What Changed

- Load the mocked service graph once per file with `hoistModuleGraph`.
- Remove the per-test module reset and unmock cycle.
- Assert exact success statuses for the three affected responses.
- Add the missing `refreshReopenPendingConsumption` mock.
- Use one named timeout constant for every `vi.waitFor` call.
- Replace `setImmediate` barriers with fake-timer advances.

## Verification

- `npx vitest run --project @paperclipai/server
server/src/__tests__/issue-closed-workspace-routes.test.ts` passes 12 of
12 tests locally.
- A 200-sample sweep with 20 parallel copies passed with zero failures.
- An independent 100-sample sweep with 20 parallel copies passed with
zero failures.
- `npx tsc --noEmit -p server` reports the same 61 pre-existing errors
with and without this change.
- GitHub Actions must run the full server suite for final verification.

## Risks

Low risk. This pull request changes one test file and does not change
product code. The stricter assertions can expose a real route failure
that the old suite hid.

## Model Used

Codex, GPT-5, tool use and code review assistance. The exact context
window and reasoning mode are not available in this handoff.

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have searched GitHub for duplicate or related PRs and linked
them above
- [x] I have either (a) linked existing issues with `Fixes: #` / `Closes
#` / `Refs #` OR (b) described the issue in-PR following the relevant
issue template
- [x] I have not referenced internal/instance-local Paperclip issues or
links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip`
URLs)
- [x] My branch name describes the change (e.g. `docs/...`, `fix/...`)
and contains no internal Paperclip ticket id or instance-derived details
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [x] All Paperclip CI gates are green
- [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups
- [x] I will address all Greptile and reviewer comments before
requesting merge

Co-authored-by: Paperclip <noreply@paperclip.ing>
2026-08-28 15:47:12 -07:00
Nicky LeachandPaperclip 64b7dce0ad refactor(adapter-utils): replace the process-wide byte ledger with route-local byte bounds (#12465)
## Thinking Path

> - Paperclip is the open source app people use to manage AI agents for
work.
> - The adapter layer carries sandbox requests to host processes.
> - The HTTP/2 bridge used one process-wide byte ledger for all routes.
> - One busy route could exhaust that shared budget and move another
route to file transport.
> - This pull request gives each host retention site a fixed byte bound
and limits concurrent HTTP/2 streams.
> - The benefit is local protection: one route cannot consume the byte
budget of another route.

## Linked Issues or Issue Description

**What happened?**

The HTTP/2 bridge used one aggregate byte ledger for retained bytes
across all routes. A busy route could exhaust the shared budget and
force an unrelated route to use file transport.

**Expected behavior**

Each route should protect its own retained bytes. A reset on one HTTP/2
stream should cancel only that stream's host forward.

**Steps to reproduce**

1. Start the HTTP/2 bridge with multiple sandbox routes.
2. Send enough retained data through one route to reach the aggregate
byte limit.
3. Send a request through a sibling route.
4. Observe that the sibling route can fall back to file transport
because the first route used the shared ledger.

**Paperclip version or commit**

`47639e227e78e3c5e0dd1a3c0e2d792fe86895a3`

**Deployment mode**

Built from source with the adapter-utils and server test suites.

## What Changed

- Bound each host retention site with a fixed local byte limit.
- Limited concurrent live HTTP/2 streams with one built-in stream limit.
- Bound each host forward and response-body read to its own HTTP/2
stream lifetime.
- Removed the process-wide byte ledger, its environment override, its
metrics, and its file-transport fallbacks.
- Added tests for the stream limit, host body budget, and sibling-stream
cancellation.

## Verification

- Run `pnpm vitest run --project adapter-utils`.
- Confirm that 996 adapter-utils tests pass.
- Confirm that `test_live_forward_work_never_passes_the_stream_limit`
passes.
- Confirm that `test_the_host_body_budget_matches_the_stream_limit`
passes.
- Confirm that the sibling-stream cancellation test passes.
- Run `pnpm tsc --noEmit`.
- Confirm that all pull request checks pass.

## Risks

The bridge no longer uses a process-wide byte ledger. A local bound or
stream limit that is too low can reject or delay valid work. The tests
cover the new limits and stream cancellation behavior.

## Model Used

OpenAI GPT-5 Codex. Runtime model ID: GPT-5. The model used code
execution and repository tools. The runtime does not expose the context
window size.

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have searched GitHub for duplicate or related PRs and linked
them above
- [x] I have either (a) linked existing issues with `Fixes: #` /
`Closes: #` / `Refs #` OR (b) described the issue in-PR following the
relevant issue template
- [x] I have not referenced internal/instance-local Paperclip issues or
links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip`
URLs)
- [x] My branch name describes the change (e.g. `docs/...`, `fix/...`)
and contains no internal Paperclip ticket id or instance-derived details
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [x] All Paperclip CI gates are green
- [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups
- [x] I will address all Greptile and reviewer comments before
requesting merge

---------

Co-authored-by: Paperclip <noreply@paperclip.ing>
2026-08-28 14:36:18 -07:00
Nicky LeachandPaperclip a3b78f9d34 fix(cli): make embedded-Postgres tests survive runner contention (#12466)
## Thinking Path

> - Paperclip is the open source app people use to manage AI agents for
work.
> - The CLI test suite uses embedded Postgres for worktree checks.
> - Several tests start a cluster and run migrations on each test.
> - Runner contention can make this cost class exceed small hand-written
time budgets.
> - A timed-out test can also leave the cluster alive while cleanup
removes its data directory.
> - This pull request gives the cost class one measured timeout and
registers cleanup for the timeout path.
> - The benefit is stable tests and fewer orphaned embedded Postgres
processes.

## Linked Issues or Issue Description

No public GitHub issue tracks this defect. Related PRs #10987 and #10961
address wider embedded-Postgres test setup issues. This pull request
addresses the CLI timeout and cleanup path described below.

**What happened?**
Five CLI tests used different hand-written time budgets while they
started embedded Postgres and ran migrations. Runner contention made one
test exceed its budget. A timeout also skipped the `finally` cleanup
path and left a Postgres process alive.

**Expected behavior**
Each embedded-Postgres test gets a budget that covers measured runner
contention. Cleanup stops the cluster before the test removes its data
directory, including after a timeout.

**Steps to reproduce**
1. Run `npx vitest run cli/src/__tests__/worktree.test.ts` on a
contended runner.
2. Observe the embedded-Postgres tests take longer than their small
hand-written budgets.
3. Inspect the process list after a timeout and observe an orphaned
Postgres process.

**Paperclip version or commit**
The defect reproduces on `master` before this pull request.

**Deployment mode**
Built from source with Vitest.

**Installation method**
Built from source with pnpm.

## What Changed

- Export `EMBEDDED_POSTGRES_TEST_TIMEOUT_MS` from the embedded-Postgres
test helper.
- Apply the shared timeout to every test defined by
`itEmbeddedPostgres`.
- Replace the five hand-written timeout values in `worktree.test.ts`.
- Register temporary-directory removal and cluster stop with
`onTestFinished` in the correct order.
- Restore the working directory during timeout cleanup.

## Verification

- `npx vitest run cli/src/__tests__/worktree.test.ts` passes 63 tests.
- `npx vitest run cli/src` passes 424 tests across 59 files.
- `tsc --noEmit` in `cli/` adds no new error in the touched files.
- CI must pass on the pull request head.
- Greptile must report 5/5 with no unresolved blocking thread.

## Risks

- Low risk. The change affects test helpers and test cleanup only.
- The shared budget can lengthen a failing test before Vitest reports
the failure.
- The cleanup order depends on Vitest callback order, which the tests
now use explicitly.

## Model Used

OpenAI Codex, GPT-5. The model used tool calls and code review support.
The context window size and internal reasoning mode were not exposed in
this run.

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have searched GitHub for duplicate or related PRs and linked
them above
- [x] I have either (a) linked existing issues with `Fixes: #` /
`Closes: #` / `Refs: #` OR (b) described the issue in-PR following the
relevant issue template
- [x] I have not referenced internal/instance-local Paperclip issues or
links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip`
URLs)
- [x] My branch name describes the change (e.g. `docs/...`, `fix/...`)
and contains no internal Paperclip ticket id or instance-derived details
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [x] All Paperclip CI gates are green
- [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups
- [x] I will address all Greptile and reviewer comments before
requesting merge

---------

Co-authored-by: Paperclip <noreply@paperclip.ing>
2026-08-28 13:51:54 -07:00
Nicky LeachandPaperclip e127faa14c fix(adapter-utils): bound the ACP startup handshake and fence the abandoned session promise (#12454)
## Thinking Path

> - Paperclip is the open source app people use to manage AI agents for
work.
> - Adapter utilities start and control agent sessions.
> - The ACP startup handshake can stay pending when the sandbox
transport closes.
> - A pending handshake keeps the run active and prevents a clear
operator result.
> - This pull request bounds the handshake and fences its abandoned
promise.
> - The result gives each startup failure a terminal state and a safe
host-authored diagnostic.

## Linked Issues or Issue Description

No matching public issue or pull request appeared in the GitHub search
for this failure. The issue details follow.

**What happened?**

The adapter engine awaited `runtime.ensureSession()` without a startup
bound. A lost sandbox transport could leave the await pending.

**Expected behavior**

The engine must end the run when the startup deadline expires or the
duplex transport closes. A late session result must not reopen the
settled run.

**Steps to reproduce**

1. Start an ACP-backed agent run.
2. Keep the ACP initialization call pending.
3. Let the startup deadline expire or close the duplex transport.
4. Confirm that the run reaches a terminal state and that a late session
result does not reopen it.

**Paperclip version or commit**

`66e1c0df8b23cb8354b36dd446d9548dc4389191` merge base.

**Deployment mode**

Local dev (`pnpm dev`).

**Installation method**

Built from source (`pnpm dev`).

**Agent adapter(s) involved**

Custom / external plugin adapter.

**Database mode**

Not database-related.

**Relevant logs or output**

The new tests use fixed host-authored diagnostics for handshake guard
failures and late close failures.

**Additional context**

The change updates the execution semantics document and adds regression
coverage. The three existing failures in `execute.test.ts` also occur at
the merge base.

## What Changed

- Bound `runtime.ensureSession()` with a startup deadline and a duplex
transport loss check.
- Added terminal error codes for handshake timeout and transport loss.
- Fenced late session resolution and rejection so the settled run has
one owner.
- Suppressed sandbox-controlled diagnostic values on the guard-failure
and late-close paths.
- Added regression tests for timeout, transport loss, late resolution,
and late close rejection.
- Documented the startup live-path contract.

## Verification

- `pnpm --filter @paperclipai/adapter-utils exec tsc --noEmit` exits 0.
- The engine test suite runs from the repository root.
- The new regression cases pass.
- The three known failures remain the only failures and also fail at the
merge base. The board approved this pre-existing test exception.
- Cold start and session resume cases pass.
- All required GitHub checks pass.
- Greptile reports 5/5 with no open P2 findings, recommendations, or
follow-ups.

## Risks

The startup guard changes only the ACP startup path. A slow but valid
startup can now end at the configured deadline. The fence closes a late
handle once and records fixed host-authored diagnostics.

## Model Used

OpenAI Codex, GPT-5, current model version, tool use and code execution,
with the full task context.

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have searched GitHub for duplicate or related PRs and linked
them above
- [x] I have either (a) linked existing issues with `Fixes: #` /
`Closes: #` / `Refs #` OR (b) described the issue in-PR following the
relevant issue template
- [x] I have not referenced internal/instance-local Paperclip issues or
links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip`
URLs)
- [x] My branch name describes the change (e.g. `docs/...`, `fix/...`)
and contains no internal Paperclip ticket id or instance-derived details
- [x] I have run tests locally. Three pre-existing failures remain and
have an approved exception.
- [x] I have added or updated tests where applicable
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [x] All Paperclip CI gates are green
- [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups
- [x] I will address all Greptile and reviewer comments before
requesting merge

---------

Co-authored-by: Paperclip <noreply@paperclip.ing>
2026-08-28 12:21:37 -07:00
Nicky LeachandPaperclip b2752b21d5 fix(adapter-utils): allow process sessions without birthtime (#12451)
## Thinking Path

> - Paperclip is the open source app people use to manage AI agents for
work.
> - Remote agent adapters use a process-session wrapper inside a
sandbox.
> - Some supported sandbox filesystems do not report inode creation
time.
> - The wrapper rejects a zero creation time before it launches the
agent.
> - This pull request accepts that filesystem shape and keeps the
existing change-time probe.
> - The benefit is that valid sandbox runs can start without a
birth-time field.

## Linked Issues or Issue Description

**What happened?**

The remote process-session wrapper exited before it launched the agent
when the sandbox filesystem reported `birthtimeMs` as zero.

**Expected behavior**

The wrapper must start on a filesystem that does not report inode
creation time.

**Steps to reproduce**

1. Start the remote process-session wrapper.
2. Make `lstat()` report a zero `birthtimeMs` for its session directory.
3. Observe that the pre-fix wrapper terminates before the child process
starts.

**Paperclip version or commit**

Reproduced from `66e1c0df8b23cb8354b36dd446d9548dc4389191`.

**Deployment mode**

Self-hosted server with a remote sandbox runtime.

## What Changed

- Allow a zero reported creation time for process-session directories.
- Keep the probe that rejects a creation time copied from change time.
- Add a regression test that launches and stops a session with zero
birth time.

## Verification

- `npx vitest run
packages/adapter-utils/src/execution-target-stdin-race.test.ts`
- `pnpm --filter @paperclipai/adapter-utils typecheck`

## Risks

A filesystem without creation time can reduce the precision of
sandbox-local path-swap detection. This change does not change host-file
or Paperclip API authority. A follow-up will review that larger security
posture alignment.

> I checked `ROADMAP.md`. This is a focused compatibility bug fix for
the existing sandbox-agent roadmap area.

## Model Used

OpenAI Codex — GPT-5.6. The exact deployment suffix and context-window
size are not exposed. The model used reasoning, shell tools, and code
execution.

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have searched GitHub for duplicate or related PRs and linked
them above
- [x] I have either (a) linked existing issues with `Fixes: #` / `Closes
#` / `Refs #` OR (b) described the issue in-PR following the relevant
issue template
- [x] I have not referenced internal/instance-local Paperclip issues or
links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip`
URLs)
- [x] My branch name describes the change (e.g. `docs/...`, `fix/...`)
and contains no internal Paperclip ticket id or instance-derived details
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [x] All Paperclip CI gates are green
- [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups
- [x] I will address all Greptile and reviewer comments before
requesting merge

Co-authored-by: Paperclip <noreply@paperclip.ing>
2026-08-28 10:33:22 -07:00
Nicky LeachandPaperclip d9449e636e feat(onboarding): sign in to an agent provider during onboarding (#12440)
## Thinking Path

> - Paperclip is the open source app people use to manage AI agents for
work
> - New organizations create their first agent through the onboarding
wizard
> - The wizard does not show provider sign-in when a host credential is
absent or unknown
> - The create step also gives unclear feedback when the provider needs
authentication
> - This pull request adds a safe auth signal and a provider sign-in
step for sandbox drivers
> - The benefit is a clearer onboarding path with no token or account
data in the signal

## Linked Issues or Issue Description

**Subsystem affected**

Cross-cutting (server API, shared types, and UI)

**Problem or motivation**

The onboarding wizard can fail when the selected provider needs
authentication. It does not tell the person how to complete sign-in.

**Proposed solution**

Add a status-only provider auth signal. Show the sign-in panel for
sandbox drivers when the signal says `absent` or `unknown`. Apply a
stored Claude login to the new agent and block creation when the adapter
test reports missing authentication.

**Alternatives considered**

The wizard could hide the sign-in panel when the signal read fails. This
would hide a needed action, so this pull request shows the panel when
the signal is unknown.

**Roadmap alignment**

The change supports the roadmap goal for scoped and audited credential
bindings.

**Additional context**

The auth signal returns only `present`, `absent`, or `unknown`. It never
returns a token, identifier, or account name.

## What Changed

- Add `GET /api/companies/:companyId/adapters/:type/auth-signal` with
company and permission checks.
- Add shared auth-signal types and the UI query path.
- Apply a stored Claude login by reference without reading its token.
- Show the provider sign-in panel only for sandbox drivers with
interactive terminal support.
- Block agent creation when the provider test reports missing
authentication.
- Add route, wizard, and end-to-end test coverage.

## Verification

- `pnpm --filter @paperclipai/server test adapter-auth-signal-routes`
passes 50 tests.
- `pnpm --filter @paperclipai/ui test OnboardingWizard` passes 69 tests.
- `pnpm --filter @paperclipai/ui exec tsc --noEmit` exits with code 0.
- The `e2e_shards` lane runs `tests/e2e/onboarding.spec.ts`.

## Risks

The route reads a host-local readiness signal. It returns `unknown` on
read errors and never exposes credential data. The UI may add a sign-in
step when the signal is unavailable.

## Model Used

OpenAI Codex, GPT-5, extended reasoning, tool use, and code execution.
The exact context window was not provided.

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have searched GitHub for duplicate or related PRs and linked
them above
- [x] I have either (a) linked existing issues with `Fixes: #` /
`Closes: #` / `Refs: #` OR (b) described the issue in-PR following the
relevant issue template
- [x] I have not referenced internal/instance-local Paperclip issues or
links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip`
URLs)
- [x] My branch name describes the change (e.g. `docs/...`, `fix/...`)
and contains no internal Paperclip ticket id or instance-derived details
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [x] All Paperclip CI gates are green
- [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups
- [x] I will address all Greptile and reviewer comments before
requesting merge

---------

Co-authored-by: Paperclip <noreply@paperclip.ing>
2026-08-28 10:20:37 -07:00
Nicky LeachandPaperclip 5f1e25c112 test(server): load the company-skills route module graph once per file (#12426)
## Thinking Path

> - Paperclip is an open source app that helps people manage AI agents
for work.
> - The server provides company-scoped routes for company skills and
their test runs.
> - The authorization tests for these routes fail intermittently in
continuous integration.
> - The failure returns HTTP 500 instead of the expected HTTP 403.
> - The test file resets and rebuilds its module graph before each test.
> - This rebuild imports an unmocked issue service and raises a
TypeError.
> - This pull request loads the module graph once per describe block.
> - The change keeps the test result stable and preserves all 53 tests.

## Linked Issues or Issue Description

**What happened?**

The company-skill test-run authorization tests failed intermittently in
continuous integration. One test returned HTTP 500 instead of HTTP 403.

**Expected behavior**

Each unauthorized request must return HTTP 403. The test file must keep
all 53 tests and skip none.

**Steps to reproduce**

1. Run `npx vitest run
server/src/__tests__/company-skills-routes.test.ts` before this change.
2. Repeat the run in continuous integration.
3. Observe the intermittent HTTP 500 result in an authorization case.

**Paperclip version or commit**

Commit `651d26a96f6e24811d336759d3e67ff3abb5ec29`.

**Deployment mode**

Built from source. Continuous integration runs the test suite.

**Agent adapter(s) involved**

Not adapter-specific. This issue affects server test module setup.

**Database mode**

Not database-related.

## What Changed

- Load the mocked route module graph once for each describe block.
- Use the existing `hoistModuleGraph` helper, as the cost service test
does.
- Remove twelve per-test `vi.doUnmock` calls and the redundant module
rebuild.
- Keep the change in
`server/src/__tests__/company-skills-routes.test.ts` only.

## Verification

- Run `npx vitest run
server/src/__tests__/company-skills-routes.test.ts`.
- Confirm that 53 tests pass and 0 tests skip.
- Confirm that the diff changes only
`server/src/__tests__/company-skills-routes.test.ts`.
- Confirm that all Paperclip continuous integration checks pass.

## Risks

Low risk. The change affects test setup only. It does not change
production code, route behavior, or assertions.

## Model Used

OpenAI GPT-5 (Codex), exact model ID `gpt-5`, tool use and code
execution enabled. The runtime does not expose the context window size.

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have searched GitHub for duplicate or related PRs and linked
them above
- [x] I have either (a) linked existing issues with `Fixes: #` / `Closes
#` / `Refs #` OR (b) described the issue in-PR following the relevant
issue template
- [x] I have not referenced internal/instance-local Paperclip issues or
links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip`
URLs)
- [x] My branch name describes the change (e.g. `docs/...`, `fix/...`)
and contains no internal Paperclip ticket id or instance-derived details
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [x] All Paperclip CI gates are green
- [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups
- [x] I will address all Greptile and reviewer comments before
requesting merge

Co-authored-by: Paperclip <noreply@paperclip.ing>
2026-08-28 08:09:30 -07:00
Nicky LeachandPaperclip dc7a1a020a fix(adapter-utils): skip the remote session close when the duplex channel is already lost (#12394)
## Thinking Path

> - Paperclip is the open source app people use to manage AI agents for
work
> - The adapter runtime settles each run through a duplex control
channel
> - A lost channel can leave the remote session-close call without a
usable peer
> - The call has no deadline, so run teardown can wait for the full
adapter timeout
> - This pull request skips that remote call after the runtime latches
channel loss
> - The benefit is faster run finalization while the local cleanup
effects remain

## Linked Issues or Issue Description

**What happened?**

The run teardown placed a remote session-close call over a duplex
control channel that the runtime had already latched as lost. The call
blocked until the adapter execution timeout released it.

**Expected behavior**

Run teardown should release the local warm handle and continue when the
duplex control channel has already failed.

**Steps to reproduce**

1. Start an adapter run with the duplex control channel.
2. Latch a channel-loss state before settlement.
3. Use a runtime whose close call never resolves.
4. Confirm that teardown returns without a remote close call.

**Paperclip version or commit**

Commit d966069a78.

**Deployment mode**

Built from source.

**Agent adapter(s) involved**

Not adapter-specific. The change applies to the shared adapter runtime.

**Database mode**

Not database-related.

**Additional context**

Pull request #12373 used a larger approach for the same failure. The
board closed that pull request. This pull request contains the smaller
change.

## What Changed

- Add the required readonly `skipRemoteClose` field to the runtime
settlement plan.
- Set the field from the latched channel-loss state on the turn-finalize
plan.
- Set the field to `false` on every other settlement plan.
- Release the warm handle locally before the `end_session` step returns
without the remote call.
- Add a test that drives the lost-channel path through the settlement
sequence.

## Verification

- `./node_modules/.bin/tsc --noEmit -p packages/adapter-utils`
- `./node_modules/.bin/vitest run
packages/adapter-utils/src/acpx-engine/execute.test.ts` passes the new
test. Three existing tests fail on the merge base: two
session-fingerprint tests and one workspace-hints test.
- `./node_modules/.bin/vitest run
packages/adapter-utils/src/acpx-engine/run-fault-matrix.test.ts` reports
20 passed.
- Full CI will run on this pull request.

## Risks

The skipped remote close also skips the vendored runtime caller for
`closeBackendSession`. The run can keep a retained client after duplex
loss. A separate follow-up owns that residual. The environment lease
still releases in the teardown `finally` block.

## Model Used

OpenAI Codex, GPT-5, with tool use and code review assistance.

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have searched GitHub for duplicate or related PRs and linked
them above
- [x] I have either (a) linked existing issues with `Fixes: #` / `Closes
#` / `Refs #` OR (b) described the issue in-PR following the relevant
issue template
- [x] I have not referenced internal/instance-local Paperclip issues or
links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip`
URLs)
- [x] My branch name describes the change (e.g. `docs/...`, `fix/...`)
and contains no internal Paperclip ticket id or instance-derived details
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [x] All Paperclip CI gates are green
- [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups
- [x] I will address all Greptile and reviewer comments before
requesting merge

---------

Co-authored-by: Paperclip <noreply@paperclip.ing>
2026-08-27 22:08:08 -07:00
Nicky LeachandPaperclip 7895f7f2b0 Install the declared Sentry server package into the hosted image (#12330)
## Thinking Path

> - Paperclip is the open source app people use to manage AI agents for
work.
> - Paperclip supports opt-in Sentry error monitoring for server and
browser errors.
> - The hosted image must include the server package when an operator
sets SENTRY_DSN.
> - The server package is an optional peer in the source tree, so the
image did not include it.
> - This pull request installs the declared server package in the hosted
image and checks the result.
> - The benefit is a hosted tenant can send server errors without a
manual package install.

## Linked Issues or Issue Description

No public issue exists for this change.

**What happened?**

The hosted image did not include the declared @sentry/node server
package. A hosted tenant could set SENTRY_DSN, but the server could not
load the package from the image.

**Expected behavior**

The hosted image must include the exact @sentry/node version from
server/package.json. The self-hosted image must remain without this
optional package.

**Steps to reproduce**

1. Build or pull the hosted image.
2. Resolve @sentry/node from the server package path.
3. Compare its version with server/package.json.
4. Confirm that the tsx loader path still resolves.

**Paperclip version or commit**

Commit b6ff556a33ebdbe764b7f495951cd59009776608.

**Deployment mode**

Docker hosted image.

## What Changed

- Add a cloud-server-deps Docker stage that installs the declared
@sentry/node version in isolation.
- Copy the isolated package into the cloud image without changing the
production image.
- Add a probe that checks the tsx loader and the resolved Sentry
version.
- Run the probe after the hosted image push in the Docker workflow.
- Add server tests and update the observability documentation.

## Verification

- Run `pnpm exec vitest run --project @paperclipai/server
server/src/__tests__/cloud-image-sentry.test.ts`.
- Confirm that the changed test passes in CI.
- Confirm that all pull request checks pass.
- Note that the Docker workflow does not run for pull requests. It runs
after a push to master, for configured tags, or after manual dispatch.

## Risks

- Low risk. The production image body stays unchanged.
- The cloud image adds the declared Sentry package and a small
dependency tree.
- The workflow probe fails if the image loses the tsx loader or resolves
a different Sentry version.

## Model Used

OpenAI GPT-5; exact model version supplied by the execution service;
tool use and code execution; context window not specified.

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have searched GitHub for duplicate or related PRs and linked
them above
- [x] I have either (a) linked existing issues with `Fixes: #` /
`Closes: #` / `Refs: #` OR (b) described the issue in-PR following the
relevant issue template
- [x] I have not referenced internal/instance-local Paperclip issues or
links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip`
URLs)
- [x] My branch name describes the change (e.g. `docs/...`, `fix/...`)
and contains no internal Paperclip ticket id or instance-derived details
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [x] All Paperclip CI gates are green
- [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups
- [x] I will address all Greptile and reviewer comments before
requesting merge

---------

Co-authored-by: Paperclip <noreply@paperclip.ing>
2026-08-27 19:10:49 -07:00
Nicky LeachandPaperclip b7fd6c59b6 fix(server): load the costs-service route module graph once per file (#12375)
## Thinking Path

> - Paperclip is the open source app people use to manage AI agents for
work
> - The server test suite checks budget and cost routes
> - The costs-service test rebuilt the full route module graph before
every test
> - Synchronous graph rebuilds caused long stalls under CPU load
> - This pull request loads the mocked graph once for each describe
block and keeps per-test mock setup
> - The benefit is a stable 17-test file without production code changes

## Linked Issues or Issue Description

**What happened?**

The costs-service route test rebuilt its full mocked module graph before
every test. Under CPU load, a rebuild sometimes stalled a test past the
15-second timeout.

**Expected behavior**

The test file should load its mocked route graph once for each describe
block while each test keeps isolated mock behavior.

**Steps to reproduce**

1. Run the costs-service route test under synthetic CPU load.
2. Repeat the file test 30 times.
3. Observe intermittent test timeouts before this change.

**Paperclip version or commit**

The test used the current master branch at the time of this change.

**Deployment mode**

Built from source.

## What Changed

- Add `hoistModuleGraph` to load the mocked route graph once for each
describe block.
- Keep per-test mock setup in `beforeEach` so test isolation stays
unchanged.
- Keep all 17 tests and their assertions.
- Remove the module graph rebuild from the per-test path.

## Verification

- Run `npx vitest run src/__tests__/costs-service.test.ts` from
`server/`.
- Confirm that the file reports 17 tests and zero skipped tests.
- Confirm that 30 runs under the same synthetic CPU load report 0.0%
failure after the change, compared with 10.0% before the change.
- Confirm that mutation checks still fail when each authorization guard
is broken.

## Risks

This change affects test setup only. The main risk is weaker test
isolation if a mock keeps state between tests. Each test still re-arms
its mock behavior in `beforeEach`, and the full assertion set remains.

> For core feature work, check [`ROADMAP.md`](ROADMAP.md) first and
discuss it in `#dev` before opening the PR. This bug fix does not add a
core feature.

## Model Used

OpenAI GPT-5. The model used tool calls and code execution. The exact
context window and reasoning configuration were not exposed by the
runtime.

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have searched GitHub for duplicate or related PRs and linked
them above
- [x] I have either (a) linked existing issues with `Fixes: #` /
`Closes: #` / `Refs: #` OR (b) described the issue in-PR following the
relevant issue template
- [x] I have not referenced internal/instance-local Paperclip issues or
links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip`
URLs)
- [x] My branch name describes the change (e.g. `docs/...`, `fix/...`)
and contains no internal Paperclip ticket id or instance-derived details
- [x] I have run tests locally and they pass (the submitting engineer
ran the file before handoff)
- [x] I have added or updated tests where applicable
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [x] All Paperclip CI gates are green
- [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups
- [x] I will address all Greptile and reviewer comments before
requesting merge

Co-authored-by: Paperclip <noreply@paperclip.ing>
2026-08-27 18:37:30 -07:00
Nicky LeachandPaperclip 17ebcc65b7 refactor(daytona): simplify the login session-home create (#12348)
## Thinking Path

> - Paperclip is the open source app people use to manage AI agents for
work
> - Sandbox providers let agents run in remote environments
> - The Daytona login flow creates a home directory for each login
session
> - The create path ran owner, mode, and link-type checks inside the
sandbox
> - These checks cannot protect the host because sandbox code can change
the checked state
> - This pull request uses one `mkdir -p` command and removes the unused
helper scripts
> - The benefit is a simpler login path with the host-side credential
checks unchanged

## Linked Issues or Issue Description

**What happened?**

The Daytona login flow used helper scripts and inside-sandbox checks for
the session-home directory. The standalone package build also copied a
scripts directory that no longer existed after the helper scripts were
removed.

**Expected behavior**

The login flow must create the session home with one `mkdir -p` command.
The package build must complete without copying a removed directory.

**Steps to reproduce**

1. Build the Daytona plugin package.
2. Start a Daytona device login.
3. Inspect the session-home create command and the package output.

**Paperclip version or commit**

Commit `dfdf5914ba37caa1e3bc380236844a7d76237e12`.

**Deployment mode**

Built from source.

## What Changed

- Replace the session-home helper checks with one `mkdir -p` command.
- Remove the two unused session-home helper scripts.
- Remove the dead build copy steps for the deleted scripts directory.
- Add coverage for a failed session-home create command.
- Keep the host-side credential reader unchanged.
- Keep the Kubernetes provider package unchanged.

## Verification

- Package unit tests pass: 220 passed, 6 skipped.
- Package typecheck passes.
- The package build passes and emits 56 files in `dist`.
- The roadmap check confirms that this change stays within the planned
sandbox-provider work.
- GitHub search found no open duplicate or related pull request.

## Risks

The login flow no longer reports owner, mode, or link-type errors from
inside the sandbox. Those checks did not protect the host. The host-side
credential reader still uses no-follow path opens and accepts only a
regular file with owner and exact mode `0600`. Risk is low because this
change removes checks that cannot enforce the host security boundary.

> For core feature work, check [`ROADMAP.md`](ROADMAP.md) first and
discuss it in `#dev` before opening the PR. This pull request updates an
existing sandbox-provider path, not a new core feature.

## Model Used

OpenAI Codex, GPT-5. The runtime provides tool use and code execution.
The runtime does not expose the context window size or a more specific
model identifier.

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have searched GitHub for duplicate or related PRs and linked
them above
- [x] I have either (a) linked existing issues with `Fixes: #` / `Closes
#` / `Refs #` OR (b) described the issue in-PR following the relevant
issue template
- [x] I have not referenced internal/instance-local Paperclip issues or
links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip`
URLs)
- [x] My branch name describes the change (e.g. `docs/...`, `fix/...`)
and contains no internal Paperclip ticket id or instance-derived details
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [x] All Paperclip CI gates are green
- [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups
- [x] I will address all Greptile and reviewer comments before
requesting merge

---------

Co-authored-by: Paperclip <noreply@paperclip.ing>
2026-08-27 15:54:48 -07:00
Nicky LeachandPaperclip 3d9be6f7fe refactor(daytona): simplify the inbound file-sync path (#12329)
## Thinking Path

> - Paperclip is the open source app people use to manage AI agents for
work
> - Sandbox providers run agent work in isolated environments
> - The Daytona inbound file-sync path writes selected sandbox data to
host paths
> - Its in-sandbox lexical and realpath guards do not protect host-write
or Paperclip API authority
> - This pull request removes those guards and simplifies the inbound
file-sync commands
> - The benefit is a smaller path with the same outbound controls and
host extraction validation

## Linked Issues or Issue Description

No public issue exists for this change. This pull request describes the
enhancement.

**What existing behavior does this improve?**

It improves inbound file and directory synchronization for the Daytona
sandbox provider.

**Subsystem affected**

`packages/plugins` — the Daytona sandbox provider.

**Current behavior**

The inbound path checks lexical and realpath confinement inside the
sandbox. It uses file-descriptor-pinned commands for file promotion,
archive extraction, and decompression. These checks do not protect
host-write or Paperclip API authority.

**Proposed behavior**

Remove the inbound lexical and realpath checks. Use `mv -f` for file
mappings, `tar -xf` for directory mappings, and `zstd -d -o` for
decompression. Keep outbound source checks, atomic snapshot downloads,
and tarball member validation.

**Reason and benefit**

The sandbox boundary protects the relevant authorities. The removed
guards run inside that boundary and only produce early errors. The
simpler commands reduce code and preserve the controls that protect the
host boundary.

**Breaking changes**

The inbound path no longer rejects mappings because of sandbox-side
lexical or realpath confinement. Outbound source validation and tarball
member validation remain unchanged.

## What Changed

- Remove lexical and realpath confinement guards from inbound file
mappings, inbound directory mappings, and post-upload command working
directories.
- Replace file-descriptor-pinned promotion with one `mv -f` command per
file mapping.
- Replace file-descriptor-pinned extraction with one `tar -xf` command
per directory mapping.
- Replace retained-descriptor decompression with `zstd -d -o`.
- Keep outbound source guards, atomic snapshot-and-download, and tarball
member validation.
- Update Daytona tests for the new command shapes and remove tests for
the removed rejections.

## Verification

- The author ran the Daytona package test suite: 232 tests passed and 6
tests skipped.
- The author ran the Daytona package typecheck successfully.
- Review the diff and confirm it changes only the three Daytona files
named in this description.
- Confirm the Storybook check may report `SKIPPED` as an expected
repository state.

## Risks

The inbound path now trusts the sandbox boundary for host-write
protection. A later change that gives sandbox code host-write or
Paperclip API authority could require new guards. Outbound source checks
and archive member validation remain in place. No Kubernetes or core
runtime file changes exist.

## Model Used

OpenAI GPT-5; exact model version and context window were not provided;
tool use and code review assistance.

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have searched GitHub for duplicate or related PRs and linked
them above
- [x] I have either (a) linked existing issues with `Fixes: #` /
`Closes: #` / `Refs: #` OR (b) described the issue in-PR following the
relevant issue template
- [x] I have not referenced internal/instance-local Paperclip issues or
links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip`
URLs)
- [x] My branch name describes the change (e.g. `docs/...`, `fix/...`)
and contains no internal Paperclip ticket id or instance-derived details
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [x] All Paperclip CI gates are green
- [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups
- [x] I will address all Greptile and reviewer comments before
requesting merge

---------

Co-authored-by: Paperclip <noreply@paperclip.ing>
2026-08-27 13:56:30 -07:00
Nicky LeachandPaperclip 036600d922 fix(db): close test database clients before the embedded Postgres cluster stops (#12335)
## Thinking Path

> - Paperclip is the open source app people use to manage AI agents for
work
> - Paperclip uses database clients and embedded PostgreSQL test
fixtures
> - A fixture stopped its embedded PostgreSQL cluster while clients
still held connections
> - The postgres.js driver then scheduled a write on a stopped
connection
> - That write escaped the timer callback and caused a test process to
exit with an error
> - This pull request closes registered clients before the fixture stops
its cluster
> - The benefit is stable test teardown and clear failure reporting in
continuous integration

## Linked Issues or Issue Description

Refs: #10869

**What happened?**

An embedded PostgreSQL test fixture stopped its cluster while database
clients still held open connections. The postgres.js driver then
scheduled a deferred write on a dead connection. The write caused an
unhandled error after the test shard reported success.

**Expected behavior**

The fixture closes all live clients for its cluster before it stops the
embedded PostgreSQL cluster. Tests then finish without a deferred write
on a dead connection.

**Steps to reproduce**

1. Run the database regression test with the embedded PostgreSQL
fixture.
2. Stop the fixture while its database client still has an open
connection.
3. Observe the deferred write and the process exit status.

**Paperclip version or commit**

Branch base: bdd8f1bed. Change head:
93e85d2ba1.

**Deployment mode**

Local dev with the embedded PostgreSQL test fixture.

**Installation method**

Built from source with pnpm.

**Agent adapter(s) involved**

Not adapter-specific. This change covers database test infrastructure.

**Database mode**

Embedded PGlite.

**Additional context**

The change keeps client references weak and keys them by host and port.
It does not retain credentials. It also handles connection URLs that the
driver accepts when the URL parser rejects them.

## What Changed

- Add a registry for live database clients in the database package.
- Close registered clients before the embedded PostgreSQL fixture stops
its cluster.
- Add a regression test for the teardown race.
- Handle driver-compatible URLs that the standard URL parser rejects.
- Add cleanup for the shared route test harness.

## Verification

- Run the full `packages/db` suite.
- Run `tsc --noEmit` in `packages/db`.
- Run the server suite that uses `route-test-harness.ts`.
- Run the teardown regression test five times.
- Confirm that the negative control fails three times.
- Confirm that no shard reports green tests and exits with an error.

## Risks

The registry changes client cleanup for embedded test fixtures. Weak
references limit retained memory in long-lived processes. The registry
uses host and port only, so it does not retain credentials. No
migration, schema, API, telemetry, authentication, or cryptography
change exists.

## Model Used

OpenAI Codex, GPT-5, tool use and code review support, standard
reasoning mode. The implementing engineer supplied the code and
verification results.

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have searched GitHub for duplicate or related PRs and linked
them above
- [x] I have either (a) linked existing issues with `Fixes: #` /
`Closes: #` / `Refs: #` OR (b) described the issue in-PR following the
relevant issue template
- [x] I have not referenced internal/instance-local Paperclip issues or
links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip`
URLs)
- [x] My branch name describes the change (e.g. `docs/...`, `fix/...`)
and contains no internal Paperclip ticket id or instance-derived details
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [x] All Paperclip CI gates are green
- [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups
- [x] I will address all Greptile and reviewer comments before
requesting merge

---------

Co-authored-by: Paperclip <noreply@paperclip.ing>
2026-08-27 13:39:42 -07:00
Nicky LeachandPaperclip 666f5a6e69 fix(server): make the wake-claim lease test deterministic (#12331)
## Thinking Path

> - Paperclip is the open source app people use to manage AI agents for
work
> - The server test suite checks question response delivery and wake
claims
> - One test used wall-clock time and could start a second delivery
under load
> - The second delivery reused one promise resolver and could hang for
15 seconds
> - This pull request uses the injected clock and one resolver for each
wakeup
> - The benefit is a deterministic test that fails at once if a second
wakeup occurs

## Linked Issues or Issue Description

**What happened?**

The wake-claim lease test slept for 70 milliseconds before it ran the
pending sweep. Under load, the lease could look stale during that
interval. The sweep then started a second delivery. The second delivery
reused one promise resolver, so the test hung until the 15-second suite
timeout.

**Expected behavior**

The test must control the time used by the service. One wakeup must use
one resolver. An unexpected second wakeup must fail at once.

**Steps to reproduce**

1. Run the question response delivery test under CPU load.
2. Let the test sleep before the pending sweep.
3. Observe that a second delivery can start and the test can reach the
15-second timeout.

**Paperclip version or commit**

Commit `0dd735e53a5cc9f6d3395834b826dfb0b1da2ea9`.

**Deployment mode**

Built from source with the server test suite.

**Installation method**

Built from source.

**Agent adapter(s) involved**

Not adapter-specific (core test issue).

**Database mode**

Not database-related.

**Additional context**

The change affects one test file. It does not change production source
code.

## What Changed

- Drive the test with the service's injected clock.
- Give each wakeup call its own promise resolver.
- Assert that lease renewal advances the last attempt time.
- Assert that the wakeup runs one time and the attempt count stays at 1.

## Verification

- Run `pnpm exec vitest run
server/src/services/__tests__/question-response-delivery.test.ts`.
- The changed file reports 29 passing tests.
- Run the changed file 25 times, including 5 runs under CPU load.

## Risks

Low risk. The change affects one test file and test setup only. It does
not change production behavior.

## Model Used

OpenAI GPT-5, exact runtime model ID supplied by the Paperclip agent
environment, tool use and code review assistance.

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have searched GitHub for duplicate or related PRs and linked
them above
- [x] I have either (a) linked existing issues with `Fixes: #` /
`Closes: #` / `Refs: #` OR (b) described the issue in-PR following the
relevant issue template
- [x] I have not referenced internal/instance-local Paperclip issues or
links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip`
URLs)
- [x] My branch name describes the change (e.g. `docs/...`, `fix/...`)
and contains no internal Paperclip ticket id or instance-derived details
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [x] All Paperclip CI gates are green
- [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups
- [x] I will address all Greptile and reviewer comments before
requesting merge

Co-authored-by: Paperclip <noreply@paperclip.ing>
2026-08-27 13:11:15 -07:00
Nicky LeachandPaperclip b06034d762 Write mode-constrained inbound files directly to their target (#12320)
## Thinking Path

> - Paperclip is the open source app people use to manage AI agents for
work
> - Adapter utilities transfer files between the host and an agent
environment
> - A sandbox target already provides the security boundary for inbound
files
> - The generic fallback adds a temporary file and a rename that do not
add protection inside that boundary
> - This pull request writes a mode-constrained inbound file directly to
its target and applies the mode after the write
> - The benefit is a simpler transfer path while host targets keep the
strict pre-write mode rule

## Linked Issues or Issue Description

**What existing behavior does this improve?**
The inbound file-sync fallback for a mode-constrained file stages the
file under a temporary name, applies the mode, and renames the file into
place.

**Subsystem affected**
`packages/adapter-utils` and `packages/plugins`.

**Current behavior**
A sandbox target uses a temporary path before it receives the file. The
host then changes the mode and renames the file to the target path.

**Proposed behavior**
A sandbox target receives the file at its target path. The host applies
the mode after the write. A host target still applies the mode before
the first byte.

**Reason and benefit**
The sandbox boundary already protects the target. The direct write
removes an unnecessary staging path and rename.

**Breaking changes**
None. The directory path and outbound transfer path keep their existing
behavior.

## What Changed

- Write a mode-constrained single-file inbound transfer directly to the
sandbox target.
- Apply the mode after the direct write and keep the confinement check
before post-upload commands.
- Scope the protocol comment by transfer direction and preserve the
strict host-target rule.
- Keep directory inbound transfers and outbound transfers unchanged.

## Verification

- Run the targeted unit suite for the changed package.
- Verify the suite covers direct target writes, post-write mode
application, and confinement rejection.
- Run `tsc --noEmit` for both changed packages.
- Review the full GitHub Actions check set after the PR opens.

## Risks

- A sandbox provider that assumes a temporary inbound path could expose
a behavior mismatch.
- The confinement check remains before post-upload commands, which
limits escape risk.
- Host targets keep the pre-write mode rule, so host permission behavior
does not change.

## Model Used

OpenAI GPT-5. This model assisted with Git operations, PR preparation,
review coordination, and tool use. Context window size and reasoning
mode are not exposed by the runtime.

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have searched GitHub for duplicate or related PRs and linked
them above
- [x] I have either (a) linked existing issues with `Fixes: #` / `Closes
#` / `Refs #` OR (b) described the issue in-PR following the relevant
issue template
- [x] I have not referenced internal/instance-local Paperclip issues or
links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip`
URLs)
- [x] My branch name describes the change (e.g. `docs/...`, `fix/...`)
and contains no internal Paperclip ticket id or instance-derived details
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [x] All Paperclip CI gates are green
- [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups
- [x] I will address all Greptile and reviewer comments before
requesting merge

---------

Co-authored-by: Paperclip <noreply@paperclip.ing>
2026-08-27 10:54:11 -07:00
Nicky LeachandPaperclip 949e975b0f docs(sandbox-providers): state the sandbox security boundary (#12286)
## Thinking Path

> - Paperclip is the open source app people use to manage AI agents for
work
> - Sandbox providers run agent work in isolated environments
> - The Daytona documents described a command wrapper that the provider
no longer uses
> - Those documents therefore described a control that the code does not
have
> - This pull request states the real sandbox boundary and the controls
for paths that cross it
> - The benefit is accurate security guidance for sandbox provider
authors and operators

## Linked Issues or Issue Description

**Issue type**

Outdated (no longer matches behavior).

**Where is the issue?**

`packages/plugins/sandbox-providers/SANDBOX-REQUIREMENTS.md` and
`packages/plugins/sandbox-providers/daytona/README.md`.

**What's wrong?**

The Daytona provider no longer uses the documented command wrapper,
package installation commands, or sudoers rule. The requirements
document also lacked a clear statement of the sandbox security boundary.

**Suggested fix**

State that the sandbox provides the boundary. Name outbound workspace
synchronization and the application programming interface bridge as the
paths that cross the boundary. State that a provider must not map a host
path into a sandbox synchronization path.

## What Changed

- Replace stale wrapper requirements with the actual sandbox security
boundary.
- State the controls that apply to outbound workspace synchronization
and the application programming interface bridge.
- State that this repository does not enforce the provider path-mapping
duty today.
- Remove obsolete Daytona package-install commands and the sudoers rule.

## Verification

- Confirm the difference contains the two documentation files and the
test file changed by the follow-up fix.
- Confirm that no unrelated source, configuration, or fixture file
appears in the difference.
- Run the repository continuous integration checks and confirm that
every required check passes.
- Run the repository review bot and confirm its final verdict.

## Risks

Low risk. This pull request changes two documents and closes a database
client in one integration test. It does not change product runtime
behavior or configuration.

## Model Used

OpenAI Codex, GPT-5, with tool use and code execution. The model
produced the documentation change and the pull request text.

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have searched GitHub for duplicate or related PRs and linked
them above
- [x] I have either (a) linked existing issues with `Fixes: #` /
`Closes: #` / `Refs: #` OR (b) described the issue in-PR following the
relevant issue template
- [x] I have not referenced internal/instance-local Paperclip issues or
links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip`
URLs)
- [x] My branch name describes the change (e.g. `docs/...`, `fix/...`)
and contains no internal Paperclip ticket id or instance-derived details
- [x] I have run the affected test locally; continuous integration
provides complete test verification.
- [x] I have added or updated tests where applicable
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [x] All Paperclip CI gates are green
- [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups
- [x] I will address all Greptile and reviewer comments before
requesting merge

---------

Co-authored-by: Paperclip <noreply@paperclip.ing>
2026-08-27 09:25:06 -07:00
Nicky LeachandPaperclip 1de105c475 fix(observability): pin the Sentry browser SDK and gate the optional Sentry server peer on the exact version (#12270)
## Thinking Path

> - Paperclip is the open source app people use to manage AI agents for
work.
> - Paperclip uses separate server and browser packages for runtime
services and the board.
> - Sentry integrations need an exact SDK version and safe optional
loading.
> - A version range can select an SDK that the privacy tests did not
audit.
> - Missing peer metadata does not describe the optional server SDK
contract.
> - This pull request pins the browser SDK and gates the optional server
SDK on its exact version.
> - The benefit is a clear SDK contract with fail-open startup behavior.

## Linked Issues or Issue Description

**What happened?**

The browser package used the range ^10.71.0, so a lockfile refresh could
select a newer SDK. The server loaded @sentry/node dynamically but did
not declare its optional peer contract.

**Expected behavior**

The browser package must use the audited 10.71.0 version. The server
must load @sentry/node only when the installed peer matches 10.71.0. The
server must start when the optional peer is absent.

**Steps to reproduce**

1. Install the project dependencies.
2. Inspect the browser Sentry version and the server package metadata.
3. Start the server without installing @sentry/node.
4. Confirm that the server starts and that the dynamic Sentry bootstrap
does not load an unsupported peer version.

**Paperclip version or commit**

9c57c0f119

**Deployment mode**

Built from source with pnpm dev or pnpm build.

**Installation method**

Built from source.

**Agent adapter(s) involved**

Not adapter-specific (core change).

**Database mode**

Not database-related.

## What Changed

- Pin @sentry/browser to exactly 10.71.0 as a UI development dependency.
- Declare @sentry/node as an optional server peer dependency at 10.71.0.
- Gate the dynamic server bootstrap on the exact peer version.
- Add tests for the browser pin, peer metadata, version gate, and
fail-open loading.
- Document the supported server SDK version.
- Keep the lockfile unchanged because the pull request workflow
regenerates it for manifest changes.

## Verification

- Server tests pass with six expected skips when @sentry/node is absent.
- UI tests pass.
- The UI build emits the lazy Sentry browser chunk.
- git diff --check passes.
- GitHub pull request checks must pass after this pull request opens.
- Greptile must return a 5/5 score with no open findings.

## Risks

The exact version gate prevents Sentry startup when an unsupported SDK
version exists. The integration remains optional and fail-open. The
lockfile workflow must regenerate the lockfile before frozen downstream
jobs run. The label-gated Storybook visual job must not run until it can
restore the generated lockfile artifact.

## Model Used

OpenAI Codex, GPT-5, tool use and code review support, exact context
window details are managed by the execution platform.

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have searched GitHub for duplicate or related PRs and linked
them above
- [x] I have either (a) linked existing issues with Fixes: # / Closes: #
/ Refs: # OR (b) described the issue in-PR following the relevant issue
template
- [x] I have not referenced internal/instance-local Paperclip issues or
links
- [x] My branch name describes the change and contains no internal
Paperclip ticket id or instance-derived details
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [x] All Paperclip CI gates are green
- [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups
- [x] I will address all Greptile and reviewer comments before
requesting merge

---------

Co-authored-by: Paperclip <noreply@paperclip.ing>
2026-08-27 07:20:03 -07:00
Nicky LeachandPaperclip d785b19213 test(server): fix the pre-bind race in the byte-ledger ceiling test (#12280)
## Thinking Path

> - Paperclip is the open source app people use to manage AI agents for
work.
> - The server manages duplex channels that carry data between workers
and hosts.
> - The aggregate byte-ledger ceiling test can race the channel bind.
> - The race can make channel open fail before the test checks the
ceiling rejection.
> - This pull request writes one byte after the open call binds the
channel.
> - The test now checks the post-bind rejection and the retained-byte
count.
> - The benefit is a stable test that checks the intended byte-ledger
behavior.

## Linked Issues or Issue Description

**What happened?**

The duplex aggregate byte-ledger ceiling test scripted data during
channel open. Under load, the host could process the data notification
before the open continuation bound the route. The test then saw
`DUPLEX_CHANNEL_OPEN_FAILED` instead of the intended post-bind
rejection.

**Expected behavior**

The test must open the channel first. It must then write one byte and
confirm that the serialized host-to-worker frame exceeds the four-byte
ceiling. The route must reject the write and retain no bytes.

**Steps to reproduce**

1. Run the focused server test file.
2. Repeat the test several times under load.
3. Observe that the old test can fail during channel open.
4. Run the updated test and confirm the post-bind rejection.

**Paperclip version or commit**

b64fbcd5b2

**Deployment mode**

Built from source with the server test runner.

**Installation method**

Built from source.

**Agent adapter(s) involved**

Not adapter-specific (core test).

**Database mode**

Not database-related.

**Additional context**

The change keeps the test-only scope to one file. A previous dependency
change used a separate pull request. This pull request covers the duplex
byte-ledger test fix only.

## What Changed

- Open the duplex channel without scripted data.
- Write one byte after the open call resolves.
- Update the test name and comments to describe the two reservations.
- Keep the change limited to
`server/src/__tests__/plugin-worker-manager-duplex-byte-ledger.test.ts`.

## Verification

- The focused test file passed five consecutive runs before this pull
request opened.
- The test passed with the four-byte ceiling.
- A control run with a 4096-byte ceiling failed only in this test case.
- GitHub Actions must pass the server test suite and all required gates.
- Greptile must return 5/5 with no open findings.

## Risks

Low risk. The change updates one test file and adds no production code.
The test now depends on the open call completing before the write, which
matches the route bind contract.

## Model Used

OpenAI Codex, GPT-5, tool use and code execution. The execution platform
manages the exact context window details.

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have searched GitHub for duplicate or related PRs and linked
them above
- [x] I have either (a) linked existing issues with Fixes: # / Closes: #
/ Refs: # OR (b) described the issue in-PR following the relevant issue
template
- [x] I have not referenced internal/instance-local Paperclip issues or
links
- [x] My branch name describes the change and contains no internal
Paperclip ticket id or instance-derived details
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [x] All Paperclip CI gates are green
- [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups
- [x] I will address all Greptile and reviewer comments before
requesting merge

Co-authored-by: Paperclip <noreply@paperclip.ing>
2026-08-26 22:20:12 -07:00
Nicky LeachandPaperclip 24d639abad feat(daytona): add transparent zstd-3 compression to the file-mapping upload path (#12271)
## Thinking Path

> - Paperclip is the open source app people use to manage AI agents for
work
> - Sandbox providers transfer files between the host and an agent
sandbox
> - The Daytona file-mapping upload path sends staged tar files without
compression
> - Large raw uploads use more transfer bandwidth and storage
> - This pull request adds transparent zstd-3 compression for eligible
inbound file mappings
> - The benefit is lower transfer size without changes for callers or
post-upload commands

## Linked Issues or Issue Description

**Subsystem affected**

The change affects `packages/plugins`, in the Daytona sandbox provider.

**Problem or motivation**

The Daytona file-mapping upload path sends eligible staged tar files
without compression. This increases transfer size and storage use.

**Proposed solution**

Compress eligible files on the host with zstd level 3. Upload the
compressed bytes to a confined remote scratch path. Decompress them
during the existing promote command, then promote the raw file. Use the
raw upload path when compression cannot run or does not reduce size
enough.

**Alternatives considered**

Keep the raw path for all uploads. This avoids compression work but does
not reduce transfer size. Add a new sandbox round trip for
decompression. This adds latency, so the change uses the existing
promote round trip.

**Roadmap alignment**

`ROADMAP.md` lists Daytona under cloud and sandbox agents. This focused
plugin change does not duplicate a planned core feature.

**Additional context**

The directory-mapping flow stays on the raw path. Callers and
post-upload commands keep the same behavior.

## What Changed

- Add transparent zstd-3 compression to `syncInFileMappings`.
- Upload compressed artifacts to confined remote scratch paths and
decompress them during promotion.
- Keep the raw upload fallback when zstd is absent, compression fails,
or the compressed result does not reduce size enough.
- Create the raw scratch file once with atomic exclusive no-clobber open
and write through the retained descriptor.
- Stage compressed host artifacts in private `0700` directories with
`0600` files.
- Remove temporary directories on success and failure.
- Add regression tests for compressed uploads, fallbacks, decompression
failures, and cleanup.

## Verification

- `pnpm --dir packages/plugins/sandbox-providers/daytona test` passes
with 20 tests.
- The compressed success path produces a byte-identical remote file.
- A target without zstd uses the raw upload path.
- A decompression failure does not promote a partial raw file.
- Temporary files and directories do not remain after success or
failure.
- The newest cleanup regression test fails when the production cleanup
fix is reverted and passes with the fix.

## Risks

- Compression adds host CPU work for eligible file mappings.
- The raw path remains available when compression is unavailable or
ineffective.
- Decompression runs during the existing promote command and can fail
before promotion.
- The change does not alter the directory-mapping flow or caller
interface.

## Model Used

OpenAI Codex, GPT-5, tool use and code execution enabled. The model
assisted with repository review and pull request preparation.

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have searched GitHub for duplicate or related PRs and linked
them above
- [x] I have either (a) linked existing issues with `Fixes: #` /
`Closes: #` / `Refs: #` OR (b) described the issue in-PR following the
relevant issue template
- [x] I have not referenced internal/instance-local Paperclip issues or
links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip`
URLs)
- [x] My branch name describes the change (e.g. `docs/...`, `fix/...`)
and contains no internal Paperclip ticket id or instance-derived details
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [x] All Paperclip CI gates are green
- [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups
- [x] I will address all Greptile and reviewer comments before
requesting merge

---------

Co-authored-by: Paperclip <noreply@paperclip.ing>
2026-08-26 21:22:49 -07:00
Nicky LeachandPaperclip e628cf35da fix(adapter-utils): harden the wrapper birth-time probe with exclusive create and identity-aware cleanup (#12248)
## Thinking Path

> - Paperclip is the open source app people use to manage AI agents for
work.
> - Adapter utilities run process sessions in local and remote
environments.
> - The remote process-session wrapper uses a probe file to verify
directory creation time.
> - A peer could pre-create the probe path or replace it before cleanup.
> - This pull request uses exclusive create and file-descriptor identity
checks to protect the probe.
> - The benefit is safer cleanup and fail-closed behavior at the sandbox
boundary.

## Linked Issues or Issue Description

**What existing behavior does this improve?**

The remote process-session wrapper creates and removes a birth-time
probe file. The old path-based flow did not prove that the wrapper
created the path or that the path still named the same file.

**Current behavior**

A sandbox peer can race with the probe path. The peer can pre-create a
symbolic link or replace the probe before cleanup. The wrapper can then
inspect or remove an object that it did not create.

**Proposed behavior**

The wrapper creates the probe with exclusive create. It reads `(dev,
ino, ctimeMs)` from the open file descriptor. It removes the path only
when a final identity read matches the created file.

**Reason and benefit**

This change prevents symlink-following during creation and avoids
removal of a peer's replacement object. The wrapper still fails closed
when it cannot prove a real creation time.

**Breaking changes**

None. The wrapper keeps its existing fail-closed capture behavior.

## What Changed

- Create the birth-time probe with `fs.open(path, "wx")`.
- Read probe identity with `fstat` from the open descriptor.
- Remove the probe only after a matching final identity read.
- Add focused race tests for ordinary cleanup and file, directory, and
symbolic-link replacement.

## Verification

- Run `pnpm --filter @paperclipai/adapter-utils exec tsc --noEmit`.
- Run the focused suite
`packages/adapter-utils/src/execution-target-stdin-race.test.ts`.
- Confirm that the focused suite passes all 33 tests.

## Risks

The change affects shared wrapper source for local and remote process
sessions. An identity read or cleanup failure leaves the probe in place
and stops capture. The focused tests cover the new race paths.

## Model Used

OpenAI Codex, GPT-5, tool use and code execution. The model reviewed and
prepared this pull request from the supplied implementation and test
results.

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have searched GitHub for duplicate or related PRs and linked
them above
- [x] I have either (a) linked existing issues with `Fixes: #` / `Closes
#` / `Refs #` OR (b) described the issue in-PR following the relevant
issue template
- [x] I have not referenced internal/instance-local Paperclip issues or
links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip`
URLs)
- [x] My branch name describes the change (e.g. `docs/...`, `fix/...`)
and contains no internal Paperclip ticket id or instance-derived details
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [x] All Paperclip CI gates are green
- [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups
- [x] I will address all Greptile and reviewer comments before
requesting merge

---------

Co-authored-by: Paperclip <noreply@paperclip.ing>
2026-08-26 17:51:36 -07:00
Nicky LeachandPaperclip 06cd21ed0f fix(observability): declare the optional OpenTelemetry peer dependencies (#12249)
## Thinking Path

> - Paperclip manages AI agents for work.
> - Paperclip includes an observability path that operators can enable
for tracing.
> - The server loads several OpenTelemetry packages only when tracing is
enabled.
> - The documentation calls these packages optional peer dependencies,
but the server manifest does not declare them.
> - This gap hides supported versions and stops Dependabot from
maintaining the packages.
> - This pull request aligns package metadata, runtime checks, and
documentation with the opt-in tracing design.
> - The change gives operators clear installation behavior and keeps the
no-op default.

## Linked Issues or Issue Description

This pull request fixes a package metadata and installation defect.
Related observability work appears in
[#8476](https://github.com/paperclipai/paperclip/pull/8476) and
[#9672](https://github.com/paperclipai/paperclip/pull/9672).

The server documentation described optional OpenTelemetry peer
dependencies, but `server/package.json` did not declare them. Package
managers and Dependabot could not see the supported version ranges. The
UI and Claude local adapter also relied on automatic peer installation
for `yjs` and `@anthropic-ai/sdk`.

The package manifests now declare the optional runtime packages. A
default install does not install optional tracing peers. The server
keeps its no-op behavior when tracing is disabled or a peer is absent.

## What Changed

- Add seven optional OpenTelemetry packages to `server/package.json` and
mark each package as optional.
- Keep `@opentelemetry/api` as a normal dependency for the no-op
interface.
- Disable automatic peer installation in `.npmrc`.
- Declare `yjs` for the UI package and `@anthropic-ai/sdk` for the
Claude local adapter.
- Check declared peer versions before the server loads a dynamic
OpenTelemetry import.
- Keep the endpoint gate, dynamic imports, and fail-open behavior
unchanged.
- Update the observability and README documentation.
- Tell Dependabot that its npm parser does not read `peerDependencies`.

## Verification

- Targeted server tests pass: 34 passed and 2 skipped.
- The skipped tests require the real OpenTelemetry SDK and remain
pre-existing.
- The pull request workflow regenerates the lockfile because manifest
files and `.npmrc` changed.
- The policy job confirms that the pull request does not include
`pnpm-lock.yaml`.
- GitHub checks pass except `security/snyk (cryppadotta)`, which remains
pending after its authorized wait cap.
- Greptile Review reports 5/5 with no open findings.
- Server typecheck passes.

## Risks

- Optional peers can produce a diagnostic when the installed version
does not match the declared range.
- A missing optional peer does not stop the server.
- Disabling automatic peer installation can expose undeclared package
use in other workspaces.
- This pull request declares the affected packages and adds tests for
the changed behavior.
- This pull request makes no database or API changes.

## Model Used

OpenAI Codex, GPT-5, with repository inspection and pull request
preparation.

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have searched GitHub for duplicate or related PRs and linked
them above
- [x] I have either (a) linked existing issues with Fixes / Closes /
Refs OR (b) described the issue in-PR following the relevant issue
template
- [x] I have not referenced internal/instance-local Paperclip issues or
links
- [x] My branch name describes the change and contains no internal
Paperclip ticket id
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [x] All Paperclip CI gates are green
- [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups
- [x] I will address all Greptile and reviewer comments before
requesting merge

---------

Co-authored-by: Paperclip <noreply@paperclip.ing>
2026-08-26 17:34:53 -07:00
Nicky LeachandPaperclip 4277ecbb2e fix(adapter-utils): terminate the remote process-session wrapper deterministically on bridge stop (#12244)
## Thinking Path

> - Paperclip is the open source app people use to manage AI agents for
work.
> - Adapter utilities run remote process-session wrappers for sandbox
work.
> - A wrapper can outlive its host run when the host removes its session
directory during shutdown.
> - A failed directory read can look like an empty queue, so the wrapper
can poll forever.
> - This pull request adds an explicit shutdown acknowledgement and
fail-closed identity checks.
> - The benefit is deterministic wrapper cleanup without killing an
unrelated session.

## Linked Issues or Issue Description

Refs: #11916

**What happened?**

Remote process-session wrappers could remain after a host run ended. The
host could remove the session directory before the wrapper read the
shutdown marker. The wrapper then treated directory errors as an empty
queue and continued to poll.

**Expected behavior**

The host must receive an explicit shutdown acknowledgement before it
treats the wrapper as stopped. The wrapper must stop when its session
identity becomes invalid or untrusted.

**Steps to reproduce**

1. Start a remote process-session wrapper.
2. Stop the bridge while the wrapper polls its session directory.
3. Remove the session directory during the poll.
4. Observe that the wrapper must terminate with its child.

**Paperclip version or commit**

`7cfbd1ecbe4a40261ba51fed07f624524352ada2`

**Deployment mode**

Built from source with the adapter-utils test suite.

## What Changed

- Add a shutdown control file and wait for a bounded `shutdownAck`
before session cleanup.
- Require `shutdownAck` as proof of host-side shutdown.
- Capture and verify session and stdin directory identity before each
poll.
- Terminate and latch the wrapper on missing, changed, linked,
non-directory, or untrusted paths.
- Reject unusable creation times and treat all identity-check `lstat`
errors as terminal.
- Add focused regression coverage for shutdown races and identity
failures.

## Verification

- `npx vitest run
packages/adapter-utils/src/execution-target-stdin-race.test.ts` passes.
- The full execution-target set passes: 175 tests across three files.
- The `packages/adapter-utils` typecheck passes with `tsc --noEmit`.
- CI will run on this pull request.
- Greptile will review the pull request.

## Risks

- A platform with unreliable directory creation times can stop a wrapper
earlier than before. This fail-closed result prevents an orphan.
- A transient identity-check error now stops the wrapper. This favors
cleanup over continued polling when the session identity cannot be
trusted.
- Session cleanup remains unconditional after the bounded
acknowledgement wait.

## Model Used

OpenAI Codex — GPT-5. Context window size is not exposed in this run.
The model used tool calls and code execution.

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have searched GitHub for duplicate or related PRs and linked
them above
- [x] I have either (a) linked existing issues with `Fixes: #` / `Closes
#` / `Refs #` OR (b) described the issue in-PR following the relevant
issue template
- [x] I have not referenced internal/instance-local Paperclip issues or
links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip`
URLs)
- [x] My branch name describes the change (e.g. `docs/...`, `fix/...`)
and contains no internal Paperclip ticket id or instance-derived details
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [x] All Paperclip CI gates are green
- [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups
- [x] I will address all Greptile and reviewer comments before
requesting merge

---------

Co-authored-by: Paperclip <noreply@paperclip.ing>
2026-08-26 15:12:49 -07:00
Nicky LeachandPaperclip 039a547962 fix(adapter-utils): make SSH env-lab fixture teardown deterministic (#12238)
## Thinking Path

> - Paperclip is the open source app people use to manage AI agents for
work
> - Agent adapters use SSH environment fixtures to test process behavior
> - The SSH fixture detached its listener process from the test process
> - Teardown removed the fixture directory without stopping and awaiting
that listener
> - This pull request validates fixture state, stops the listener with
bounded escalation, and waits before directory removal
> - The benefit is deterministic test cleanup without orphan listeners
or unsafe signals

## Linked Issues or Issue Description

**What happened?**

The SSH environment fixture detached its listener process. Test teardown
removed the temporary fixture directory without stopping and awaiting
the listener. Repeated test runs left orphan listeners that held
loopback ports.

**Expected behavior**

The fixture teardown stops its listener, waits for exit, and then
removes the fixture directory. A forged state file must not signal an
unrelated process.

**Steps to reproduce**

1. Run the SSH fixture test repeatedly.
2. Inspect listener processes after each run.
3. Observe orphan listeners or ports that remain held.

**Paperclip version or commit**

Commit 324e1331f8.

**Deployment mode**

Not deployment-related.

**Installation method**

Built from source.

**Agent adapter(s) involved**

Custom / external plugin adapter.

**Database mode**

Not database-related.

**Access context**

Unclear / not applicable.

**Node.js version**

Node.js 24.

**Operating system**

Linux.

**Relevant logs or output**

A diagnostic found orphan listeners with parent process ID 1. Each
orphan held a loopback port.

**Relevant config (if applicable)**

Not applicable.

**Additional context**

The change keeps the process identifier reuse check and limits signals
to fixture-owned processes.

## What Changed

- Add one teardown owner for each SSH fixture.
- Stop the detached listener and wait for exit before removing the
fixture root.
- Add bounded SIGTERM and SIGKILL escalation with ESRCH guards.
- Validate the state file before any signal call.
- Require a positive safe-integer PID and safe absolute paths rooted at
the fixture directory.
- Require sshdConfigPath to equal the fixture root sshd_config path.
- Add regression coverage for listener cleanup and forged state files.

## Verification

- `pnpm --filter @paperclipai/adapter-utils typecheck`
- `pnpm exec vitest run packages/adapter-utils/src/ssh-fixture.test.ts`
- Confirm the fixture listener count stays at zero before and after the
test run.

## Risks

The teardown now sends signals to a fixture-owned process. State
validation and the existing PID reuse check limit the target. The
escalation has bounded waits.

## Model Used

OpenAI GPT-5 Codex. Exact model ID: GPT-5 Codex. Context window: not
exposed in this run. Capabilities used: tool use, repository inspection,
GitHub operations, and code review workflow management.

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have searched GitHub for duplicate or related PRs and linked
them above
- [x] I have either (a) linked existing issues with `Fixes: #` / `Closes
#` / `Refs #` OR (b) described the issue in-PR following the relevant
issue template
- [x] I have not referenced internal/instance-local Paperclip issues or
links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip`
URLs)
- [x] My branch name describes the change (e.g. `docs/...`, `fix/...`)
and contains no internal Paperclip ticket id or instance-derived details
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [x] All Paperclip CI gates are green
- [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups
- [x] I have addressed all Greptile and reviewer comments before
requesting merge

---------

Co-authored-by: Paperclip <noreply@paperclip.ing>
2026-08-26 14:03:47 -07:00
Nicky LeachandPaperclip 8f1e3cfe24 feat(observability): add opt-in Sentry error monitoring for the server and the browser (#12190)
## Thinking Path

> - Paperclip is the open source app people use to manage AI agents for
work.
> - The server and the browser need clear error reports when an operator
enables external monitoring.
> - Paperclip already uses an opt-in OpenTelemetry pattern for server
traces.
> - Sentry can provide error reports for both runtime paths when the
operator sets one data source name.
> - This pull request adds one opt-in Sentry gate for the server and the
browser.
> - The benefit is faster diagnosis while the default setup sends no
Sentry data.

## Linked Issues or Issue Description

**What is improved?**

Paperclip gains optional error monitoring for server and browser
failures.

**Subsystem affected**

Cross-cutting (server, UI, and shared authentication data).

**Current behavior**

Paperclip has no built-in Sentry error capture for server failures or
browser boundary failures. Operators must inspect local logs and browser
tools.

**Proposed behavior**

When the operator sets `SENTRY_DSN`, the server and authenticated
browser use the same Sentry project. When the variable is absent, both
paths stay inactive. The server loads Sentry dynamically and fails open
when the optional package is absent.

**Reason and benefit**

Operators can inspect runtime errors in one Sentry project. The default
setup remains local and sends no monitoring data.

**Breaking changes**

None when `SENTRY_DSN` remains unset. Authenticated session responses
add the optional `sentryDsn` field.

**Additional context**

The implementation uses built-in Sentry privacy options. It disables
default HTTP context and breadcrumb integrations and keeps
`sendDefaultPii` false.

## What Changed

- Add an opt-in server Sentry gate with dynamic package loading and
fail-open behavior.
- Add the Sentry data source name to the authenticated session response.
- Add an authenticated browser Sentry gate and React error boundary
capture.
- Add tests for server, browser, route, and application error paths.
- Document activation, installation, privacy settings, capture behavior,
and operator controls.

## Verification

- Run `npx vitest run server/src/__tests__/sentry.test.ts`.
- Run `npx vitest run ui/src/lib/sentry.test.ts`.
- Run `npx vitest run server/src/__tests__/auth-routes.test.ts
server/src/__tests__/shutdown.test.ts`.
- Confirm that the full continuous integration suite passes on this pull
request.
- Leave `SENTRY_DSN` unset and confirm that the server and browser gates
stay inactive.
- Set `SENTRY_DSN` and install the optional Sentry packages before a
manual capture check.

## Risks

The operator controls the Sentry project and accepts the data risk when
the operator enables the feature. Error objects can contain messages,
stacks, or cause chains with private values. The default configuration
sends no data because the feature stays off without `SENTRY_DSN`. A
missing optional server package does not stop server boot.

## Model Used

OpenAI Codex, GPT-5, with tool use, repository inspection, GitHub CLI
operations, and code review support.

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have searched GitHub for duplicate or related PRs and linked
them above
- [x] I have either (a) linked existing issues with `Fixes: #` / `Closes
#` / `Refs #` OR (b) described the issue in-PR following the relevant
issue template
- [x] I have not referenced internal/instance-local Paperclip issues or
links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip`
URLs)
- [x] My branch name describes the change (e.g. `docs/...`, `fix/...`)
and contains no internal Paperclip ticket id or instance-derived details
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [x] All Paperclip CI gates are green
- [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups
- [x] I will address all Greptile and reviewer comments before
requesting merge

---------

Co-authored-by: Paperclip <noreply@paperclip.ing>
2026-08-26 11:15:45 -07:00
Nicky LeachandPaperclip 8ed1f51f75 fix(scripts): silence pnpm DEP0169 at provisioning install call sites (#12228)
## Thinking Path

> - Paperclip is the open source app people use to manage AI agents for
work.
> - Worktree provisioning prepares the dependencies and tools that these
agents need.
> - The pinned pnpm version calls the deprecated `url.parse()` function
during each install.
> - Node.js 24 reports this call as `DeprecationWarning [DEP0169]`.
> - The provisioning scripts run more than one install, so the warning
repeats in each run.
> - This pull request disables only `DEP0169` at each affected pnpm
install call site.
> - The benefit is a clear provisioning log while other deprecation
warnings remain visible.

## Linked Issues or Issue Description

**What happened?**

The worktree provisioning scripts printed `DeprecationWarning [DEP0169]`
during each pnpm install. The warning came from pnpm 9.15.4 and its
`toNerfDart` call to `url.parse()`.

**Expected behavior**

The provisioning scripts should hide this known warning from the pinned
pnpm version. They should keep other deprecation warnings visible.

**Steps to reproduce**

1. Use Node.js 24 with pnpm 9.15.4.
2. Run worktree provisioning with a base-workspace repair or dependency
install.
3. Observe the repeated `DeprecationWarning [DEP0169]` output.

**Paperclip version or commit**

Commit `5cd41b1a9996713efdfdc62373da8045664c7f30`.

**Deployment mode**

Built from source.

**Installation method**

Built from source with pnpm.

**Agent adapter(s) involved**

Not adapter-specific (core bug).

**Database mode**

Not database-related.

## What Changed

- Add `--disable-warning=DEP0169` to each affected pnpm install call
site.
- Append the flag to `NODE_OPTIONS` so the scripts keep existing values.
- Add comments that name the source of the warning and the removal
condition.
- Add a regression test for all affected scripts and warning codes.

## Verification

- `bash -n scripts/provision-worktree.sh` passes.
- `bash -n scripts/provision-worktree-runtime.sh` passes.
- `node --test scripts/__tests__/provision-worktree-self-heal.test.mjs`
passes with 15 tests.
- GitHub Actions must pass all required checks before merge.

## Risks

This change has low risk. It changes warning output only for `DEP0169`.
It does not overwrite existing `NODE_OPTIONS` values. Revert commit
`5cd41b1a9996713efdfdc62373da8045664c7f30` to restore the prior output.

## Model Used

OpenAI Codex, GPT-5. The model used tool calls and code execution. The
runtime did not expose a context-window value.

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have searched GitHub for duplicate or related PRs and linked
them above
- [x] I have either (a) linked existing issues with `Fixes: #` /
`Closes: #` / `Refs: #` OR (b) described the issue in-PR following the
relevant issue template
- [x] I have not referenced internal/instance-local Paperclip issues or
links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip`
URLs)
- [x] My branch name describes the change (e.g. `docs/...`, `fix/...`)
and contains no internal Paperclip ticket id or instance-derived details
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [x] All Paperclip CI gates are green
- [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups
- [x] I will address all Greptile and reviewer comments before
requesting merge

Co-authored-by: Paperclip <noreply@paperclip.ing>
2026-08-26 10:42:13 -07:00
Nicky LeachandPaperclip 198fc8b281 fix(adapter-utils): harden the referenced-project ignore scan (#12214)
## Thinking Path

> - Paperclip is the open source app people use to manage AI agents for
work
> - Agent adapters stage referenced projects into controlled sandboxes
> - The ignore scan must preserve exact Git path bytes and fail closed
on unsafe input
> - Unbounded ignored-path data and raw diagnostics can harm resource
use or expose host details
> - This pull request adds exact path parsing, input bounds, fixed
failure categories, and saturation-only retry
> - The benefit is safer and more predictable referenced-project staging

## Linked Issues or Issue Description

**What happened?**

The referenced-project ignore scan trimmed NUL-delimited Git paths. It
also accepted a large ignored-path set and exposed raw failure details
through staging errors and warnings.

**Expected behavior**

The scan must preserve leading and trailing whitespace in Git paths. It
must reject oversized ignored-path data and expose only fixed failure
categories.

**Steps to reproduce**

1. Run the referenced-project ignore scan with paths that start or end
with whitespace.
2. Provide more than 10,000 ignored entries or more than 2 MiB of path
bytes.
3. Trigger a scan failure and inspect the reported reason.

**Paperclip version or commit**

d560bc2ae2

**Deployment mode**

Built from source.

**Installation method**

Built from source.

**Agent adapter(s) involved**

Not adapter-specific.

**Database mode**

Not database-related.

**Additional context**

This change covers the overlay diff, untracked, deleted, and ignored Git
paths. It also retries only typed scheduler saturation failures.

## What Changed

- Preserve all bytes in NUL-delimited Git path records.
- Bound ignored-entry count and total UTF-8 path bytes during parsing.
- Redact scan failure details to three fixed reason categories.
- Retry only the typed scheduler saturation error, with three total
attempts and 1 second then 2 second waits.
- Add tests for path whitespace, limits, diagnostics, retry behavior,
and scheduler code parity.

## Verification

- `npx tsc --noEmit` in `packages/adapter-utils` passed.
- `npx vitest run packages/adapter-utils` passed with 977 tests and 4
skipped.
- Continuous integration must run the server suite and the full
repository gates.

## Risks

The scan now rejects ignored-path data above fixed limits. Saturation
retries add up to 3 seconds before a final failure. The resolver still
fails closed for all other errors.

## Model Used

OpenAI GPT-5. The model used tool calls, code inspection, and command
execution. The exact context window and reasoning mode are not exposed
by the runtime.

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have searched GitHub for duplicate or related PRs and linked
them above
- [x] I have either (a) linked existing issues with `Fixes: #` / `Closes
#` / `Refs #` OR (b) described the issue in-PR following the relevant
issue template
- [x] I have not referenced internal/instance-local Paperclip issues or
links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip`
URLs)
- [x] My branch name describes the change (e.g. `docs/...`, `fix/...`)
and contains no internal Paperclip ticket id or instance-derived details
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [x] All Paperclip CI gates are green
- [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups
- [x] I will address all Greptile and reviewer comments before
requesting merge

---------

Co-authored-by: Paperclip <noreply@paperclip.ing>
2026-08-26 08:30:42 -07:00
Nicky LeachandPaperclip 821573ede8 refactor(adapter-utils): extract the shared workspace-restore teardown factory (#12196)
## Thinking Path

> - Paperclip is the open source app people use to manage AI agents for
work.
> - Agent adapters run workspace restore steps when an ACP run ends.
> - Claude, Codex, and Gemini each kept a near-identical teardown
closure.
> - Duplicate closures require the same defect fix in three files.
> - This pull request adds one shared workspace-restore teardown factory
and keeps each adapter's message strings.
> - The benefit is one tested restore-failure path with the same output
and outcome for all three adapters.

## Linked Issues or Issue Description

**What existing behavior does this improve?**

The Claude, Codex, and Gemini ACP adapters restore the workspace during
teardown and report restore failures with an allowlisted message.

**Subsystem affected**

`packages/adapters/` and `packages/adapter-utils/`.

**Current behavior**

Each adapter keeps a near-identical closure. The closure logs a start
line, restores the workspace, classifies errors, and logs a fixed
failure line.

**Proposed behavior**

A shared `createWorkspaceRestoreTeardown` factory owns the common steps.
Each adapter passes its staged runtime, log sink, start line, and
failure prefix.

**Reason and benefit**

The shared factory removes duplicate error handling. One tested
implementation now preserves the existing output and outcome for all
three adapters.

**Breaking changes**

None. The refactor preserves the emitted lines and returned outcomes.

**Additional context**

This pull request contains no public issue reference because no related
public issue was found.

## What Changed

- Add `createWorkspaceRestoreTeardown` to `packages/adapter-utils`.
- Move the shared restore, classify, and allowlisted log flow into the
factory.
- Update the Claude, Codex, and Gemini ACP adapters to call the factory.
- Add a table-driven test for all three message pairs.
- Keep one end-to-end restore-failure regression test per adapter.

## Verification

- `pnpm --filter @paperclipai/adapter-claude-local typecheck`
- `pnpm --filter @paperclipai/adapter-codex-local typecheck`
- `pnpm --filter @paperclipai/adapter-gemini-local typecheck`
- `npx vitest run
packages/adapter-utils/src/workspace-restore-teardown.test.ts`
- `npx vitest run
packages/adapter-utils/src/workspace-restore-merge.test.ts`
- `npx vitest run packages/adapters/claude-local/src/server/acp.test.ts`
- `npx vitest run packages/adapters/codex-local/src/server/acp.test.ts`
- `npx vitest run packages/adapters/gemini-local/src/server/acp.test.ts`
- Continuous integration must pass before merge, except for the known
pre-existing failures listed in the handoff.

## Risks

Low risk. This change moves shared code without changing behavior. The
adapter-specific message strings remain unchanged.

## Model Used

OpenAI GPT-5, exact model ID `gpt-5`, tool use and code review
assistance. The context window size was not provided by the runtime.

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have searched GitHub for duplicate or related PRs and linked
them above
- [x] I have either (a) linked existing issues with `Fixes: #` / `Closes
#` / `Refs #` OR (b) described the issue in-PR following the relevant
issue template
- [x] I have not referenced internal/instance-local Paperclip issues or
links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip`
URLs)
- [x] My branch name describes the change (e.g. `docs/...`, `fix/...`)
and contains no internal Paperclip ticket id or instance-derived details
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [x] All Paperclip CI gates are green
- [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups
- [x] I will address all Greptile and reviewer comments before
requesting merge

---------

Co-authored-by: Paperclip <noreply@paperclip.ing>
2026-08-25 21:38:27 -07:00
Nicky LeachandPaperclip dc30dc4f34 fix(setup-token): pin the start guard to the served adapter (#12179)
## Thinking Path

> - Paperclip is the open source app people use to manage AI agents for
work
> - Sandbox agents use adapter login routes to start authenticated
sessions
> - The setup-token start route accepted adapter types that later routes
and cleanup did not serve
> - This mismatch could create sessions that no route or reaper could
reach
> - The OpenAPI body schema and synchronous login capability defaults
also differed from the enforced behavior
> - This pull request pins the start guard to the served adapter, shares
the adapter constant, aligns the schema, and exposes login capabilities
early
> - The benefit is consistent session access, cleanup, API
documentation, and login UI behavior

## Linked Issues or Issue Description

Refs: #11730

Refs: #11286

**Subsystem affected**

Cross-cutting server and UI login behavior.

**Problem or motivation**

The setup-token start route accepted a non-served adapter type.
Follow-up routes and the reaper only handled the served adapter. This
could create an unreachable session that held its slot. The OpenAPI
schema and early capability defaults also did not match the route
behavior.

**Proposed solution**

Pin the start guard, follow-up key, and reaper filter to one exported
served-adapter constant. Derive the OpenAPI body from the strict shared
schema. Add the login capability projection to synchronous defaults.

**Alternatives considered**

Keep separate adapter constants and add another guard at each follow-up
route. This would preserve duplicate sources of truth and leave future
drift possible.

**Roadmap alignment**

This change supports the Cloud / Sandbox agents milestone in
`ROADMAP.md`.

## What Changed

- Reject a setup-token start request when its adapter type is not the
served adapter.
- Reuse one exported adapter constant for the start guard, follow-up
key, and reaper filter.
- Derive the company adapter login-sessions start body from the strict
shared schema.
- Add the `login` capability projection to the synchronous Claude and
Codex adapter defaults.
- Add regression coverage for the rejected non-served adapter request.

## Verification

- The setup-token route suite passes, including the non-served adapter
regression test.
- The setup-token session-service suite passes.
- The setup-token reaper suite passes.
- The OpenAPI suite passes.
- The server TypeScript check passes.
- The UI TypeScript check passes.
- GitHub Actions must confirm all required checks after pull request
creation.

## Risks

The start route now rejects adapter types that follow-up routes cannot
serve. No database migration exists. Revert the one commit to roll back
the change.

## Model Used

OpenAI Codex, GPT-5, exact runtime model ID not exposed, large context
window, reasoning, tool use, and code execution. The implementing
engineer used AI assistance.

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have searched GitHub for duplicate or related PRs and linked
them above
- [x] I have either (a) linked existing issues with `Fixes: #` /
`Closes: #` / `Refs: #` OR (b) described the issue in-PR following the
relevant issue template
- [x] I have not referenced internal/instance-local Paperclip issues or
links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip`
URLs)
- [x] My branch name describes the change (e.g. `docs/...`, `fix/...`)
and contains no internal Paperclip ticket id or instance-derived details
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [x] All Paperclip CI gates are green
- [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups
- [x] I will address all Greptile and reviewer comments before
requesting merge

---------

Co-authored-by: Paperclip <noreply@paperclip.ing>
2026-08-25 19:48:44 -07:00
Nicky LeachandPaperclip 29d12045f4 perf(gateway): remove the whole-body string round trip on the HTTP/2 send path (#12189)
## Thinking Path

> - Paperclip is the open source app people use to manage AI agents for
work.
> - Sandbox agents send callback requests through a generated gateway.
> - The HTTP/2 callback path converts each full request body to a UTF-8
string.
> - The same path converts that string back to a buffer before it sends
the request.
> - This pull request sends the body buffer directly to the HTTP/2
forwarder.
> - The benefit is less copying and unchanged queue payload behavior.

## Linked Issues or Issue Description

**What existing behavior does this improve?**

The sandbox callback gateway HTTP/2 send path copies the full request
body through a UTF-8 string before it sends the body.

**Subsystem affected**

The affected subsystem is `packages/adapter-utils`, which contains
sandbox gateway and HTTP/2 adapter utilities.

**Current behavior**

The gateway reads the body into a buffer, converts the complete body to
a UTF-8 string, and converts that string back to a buffer for the HTTP/2
path. The queue path stores the string payload.

**Proposed behavior**

The gateway keeps a byte reader for the HTTP/2 path. A thin text wrapper
keeps the queue path behavior. The HTTP/2 path sends the original body
buffer.

**Reason and benefit**

The extra conversions add work and memory use without changing the
HTTP/2 body bytes. Direct buffer forwarding removes that work and
preserves the size limit and reject behavior.

**Breaking changes**

None. The queue payload remains a string. The body size limit, content
type check, and reject point remain unchanged.

**Additional context**

This change has no public issue link. The repository roadmap search
found no duplicate planned work. The implementation also adds tests for
non-ASCII JSON, malformed UTF-8, size limits, and queue payload shape.

## What Changed

- Add `readBodyBytes(req)` for byte-preserving body reads.
- Keep `readBody(req)` as a string wrapper for the queue path.
- Send the byte buffer directly on the HTTP/2 path.
- Add tests for byte identity, malformed UTF-8, size limits, and queue
payload shape.

## Verification

- `pnpm --filter @paperclip/adapter-utils test
src/sandbox-callback-bridge.test.ts` passed with 51 tests.
- `pnpm --filter @paperclip/adapter-utils exec tsc --noEmit` passed.
- The tests spawn the generated gateway and the real host HTTP/2 bridge.
- The tests verify byte identity, malformed UTF-8, pre-forward size
rejection, queue file protection, and string queue payloads.
- Full repository CI must pass before merge.

## Risks

Low risk. The HTTP/2 path changes its internal body conversion only. The
queue path keeps the prior string payload. The size limit and reject
point stay unchanged.

## Model Used

OpenAI Codex, GPT-5, tool use and code review assistance. The exact
runtime context window is managed by the Codex service.

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have searched GitHub for duplicate or related PRs and linked
them above
- [x] I have either (a) linked existing issues with `Fixes: #` /
`Closes: #` / `Refs: #` OR (b) described the issue in-PR following the
relevant issue template
- [x] I have not referenced internal/instance-local Paperclip issues or
links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip`
URLs)
- [x] My branch name describes the change (e.g. `docs/...`, `fix/...`)
and contains no internal Paperclip ticket id or instance-derived details
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [x] All Paperclip CI gates are green
- [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups
- [x] I will address all Greptile and reviewer comments before
requesting merge

Co-authored-by: Paperclip <noreply@paperclip.ing>
2026-08-25 14:56:17 -07:00
Nicky LeachandPaperclip 802f2af154 refactor(adapter-utils): delete the dead duplex body-chunk protocol code (#12186)
## Thinking Path

> - Paperclip is the open source app people use to manage AI agents for
work
> - The adapter utilities package provides transport code for sandbox
agents
> - The retired `duplex_v1` broker no longer produces or consumes
body-chunk frames
> - Dead protocol code remains in the host codec, gateway copy, bridge
options, and tests
> - This pull request removes that dead code and keeps the READY
handshake unchanged
> - The benefit is a smaller transport surface with fewer unused paths
to maintain

## Linked Issues or Issue Description

**What existing behavior does this improve?**

This change improves the adapter utilities code that supports sandbox
duplex readiness and frame handling.

**Subsystem affected**

`packages/adapter-utils/` — sandbox transport codecs, execution targets,
and callback bridge tests.

**Current behavior**

The repository keeps body-chunk frame types, validators, a body spool,
decoder limits, and tests after the `duplex_v1` broker removal. No live
producer or consumer uses this code.

**Proposed behavior**

Remove the unused body-chunk protocol code and retain the READY
handshake, its strict checks, and its size limits.

**Reason and benefit**

The removal reduces dead code and keeps the host and embedded gateway
paths easier to inspect. It adds no new behavior.

**Breaking changes**

The removed frame types now decode as `unknown_type`. The live readiness
gate already ignores those frames. The READY handshake stays
byte-for-byte compatible.

**Additional context**

This cleanup follows [PR
#12171](https://github.com/paperclipai/paperclip/pull/12171), which
removed the duplex broker.

## What Changed

- Remove `duplex-body-spool.ts` and its test.
- Remove unused body-chunk frame types, validators, decoder code,
vectors, and limits.
- Remove the unused `reassembledBody` option and decoder limit
environment entry.
- Remove the embedded gateway decoder copy and the unused frame type
map.
- Keep the READY handshake and its existing boundary tests unchanged in
behavior.

## Verification

- `pnpm -F @paperclip/adapter-utils typecheck` passes.
- The duplex frame codec test passes with 30 tests.
- The sandbox execution-target test passes with 136 tests.
- The sandbox callback bridge test passes with 46 tests.
- CI must confirm all required checks after it starts.

## Risks

Low risk. The change removes code only. The READY handshake, HTTP/2 body
path, and byte-ledger path remain unchanged.

## Model Used

OpenAI Codex, GPT-5, tool use and code execution.

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have searched GitHub for duplicate or related PRs and linked
them above
- [x] I have either (a) linked existing issues with `Fixes: #` / `Closes
#` / `Refs #` OR (b) described the issue in-PR following the relevant
issue template
- [x] I have not referenced internal/instance-local Paperclip issues or
links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip`
URLs)
- [x] My branch name describes the change (e.g. `docs/...`, `fix/...`)
and contains no internal Paperclip ticket id or instance-derived details
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [x] All Paperclip CI gates are green
- [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups
- [x] I will address all Greptile and reviewer comments before
requesting merge

---------

Co-authored-by: Paperclip <noreply@paperclip.ing>
2026-08-25 14:33:38 -07:00
Nicky LeachandPaperclip 822e0aed93 fix(adapter-utils): move the workspace-restore merge lock to an instance-scoped root and surface restore failures on the run (#12187)
## Thinking Path

> - Paperclip is the open source app people use to manage AI agents for
work
> - Agent adapters restore sandbox work into project workspaces after a
run
> - The restore lock used the target workspace parent, which can reject
writes
> - The teardown then hid restore errors, so a run could report success
with lost work
> - This pull request moves the lock into an instance-scoped root and
reports safe restore failure codes
> - The benefit is reliable restore coordination and visible failure
evidence without changing run success semantics

## Linked Issues or Issue Description

Refs: #10914

## What Changed

- Move the workspace-restore merge lock into a private, instance-scoped
root.
- Derive the lock key from the canonical target path with SHA-256.
- Resolve the lock root from the caller environment and reject unsafe
root types.
- Classify restore failures with three allowlisted codes.
- Add the failure code to run result JSON without exposing a host path
or process identifier.
- Keep restore failure fail-open for the run exit code and run status.

## Verification

- Run `npx vitest run
packages/adapter-utils/src/workspace-restore-merge.test.ts`.
- Run `npx vitest run
packages/adapter-utils/src/acpx-engine/run-fault-matrix.test.ts`.
- Run the four Codex credential suites.
- Confirm the branch includes the current `master` commit and no manual
lockfile edit.
- Confirm all pull request checks and the Greptile review reach a
terminal green state.

## Risks

- The lock path changes for workspace restore and removes the
sibling-directory fallback.
- A misconfigured or inaccessible instance home can still stop lock
setup.
- Restore remains fail-open, so callers must inspect the result evidence
when a restore fails.

## Model Used

OpenAI GPT-5. The model used tool calls and code execution to validate
and route an author-provided change. The implementing engineer authored
the code.

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have searched GitHub for duplicate or related PRs and linked
them above
- [x] I have either (a) linked existing issues with `Fixes: #` /
`Closes: #` / `Refs: #` OR (b) described the issue in-PR following the
relevant issue template
- [x] I have not referenced internal/instance-local Paperclip issues or
links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip`
URLs)
- [x] My branch name describes the change (e.g. `docs/...`, `fix/...`)
and contains no internal Paperclip ticket id or instance-derived details
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [x] All Paperclip CI gates are green
- [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups
- [x] I will address all Greptile and reviewer comments before
requesting merge

---------

Co-authored-by: Paperclip <noreply@paperclip.ing>
2026-08-25 14:32:14 -07:00
Nicky LeachandPaperclip d866ff374e fix(adapter-utils): report real transferred bytes for project sync, git-history export, and workspace restore (#12180)
## Thinking Path

> - Paperclip is the open source app people use to manage AI agents for
work
> - Agent adapters move files between the host and sandbox during a run
> - The sync transport reports transferred bytes, but some progress
lines discard this value
> - Discarded byte totals make large transfers display as `0.0 MB`
> - This pull request passes the transport total to the affected
progress lines
> - The benefit is accurate transfer progress without changing file
movement or confinement checks

## Linked Issues or Issue Description

**What happened?**

Three file-sync progress lines displayed `0.0 MB` when the transport
moved data. The affected paths cover referenced-project staging, native
git-history export, and native workspace restore.

**Expected behavior**

Each progress line should display the bytes that the sync transport
transfers. A provider that reports zero bytes should preserve the known
host-side value for inbound workspace sync.

**Steps to reproduce**

1. Run a sandbox task that stages a referenced project.
2. Run a task that uses native git-history export or native workspace
restore.
3. Inspect the file-sync progress lines during each transfer.

**Paperclip version or commit**

Commit `8062612baa20036a1defce8bbd683c038ba187d5`.

**Deployment mode**

Built from source with the adapter-utils Vitest suite.

## What Changed

- Add a helper that sums valid `bytesTransferred` values from a
`SandboxSyncResult`.
- Use the transport total for referenced-project staging, native
git-history export, and native workspace restore.
- Preserve the caller count when referenced-project staging reports zero
bytes.
- Add tests for non-zero progress and the zero-byte fallback.

## Verification

- Run `npx vitest run
packages/adapter-utils/src/sandbox-managed-runtime.test.ts` from the
repository root.
- Run the TypeScript check for `packages/adapter-utils`.
- Confirm that the new tests cover referenced-project staging, native
workspace restore, native git-history export, and the zero-byte
fallback.

## Risks

This change affects progress reporting only. It does not change
transferred files, transfer order, provider behavior, or confinement
checks.

## Model Used

OpenAI Codex, GPT-5, with tool use and code execution. The model
reviewed and routed the author-provided change. The implementing
engineer authored the code.

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have searched GitHub for duplicate or related PRs and linked
them above
- [x] I have either (a) linked existing issues with `Fixes: #` /
`Closes: #` / `Refs: #` OR (b) described the issue in-PR following the
relevant issue template
- [x] I have not referenced internal/instance-local Paperclip issues or
links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip`
URLs)
- [x] My branch name describes the change (e.g. `docs/...`, `fix/...`)
and contains no internal Paperclip ticket id or instance-derived details
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [x] All Paperclip CI gates are green
- [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups
- [x] I have addressed all Greptile and reviewer comments before
requesting merge

Co-authored-by: Paperclip <noreply@paperclip.ing>
2026-08-25 14:24:13 -07:00
Nicky LeachandPaperclip 6880213de5 fix(adapter-utils): honor .gitignore for referenced-project staging (#12184)
## Thinking Path

> - Paperclip is the open source app people use to manage AI agents for
work.
> - Sandbox adapters stage project files before an agent starts.
> - Referenced projects ignored Git-ignored paths and copied large local
directories.
> - This behavior increased staging time and disk use, and it differed
from anchor workspaces.
> - This pull request resolves Git-ignored paths once and shares that
result across all referenced-project consumers.
> - The benefit is smaller, faster, and consistent project staging.

## Linked Issues or Issue Description

No public GitHub issue exists for this bug.

**What happened?**
Referenced-project staging copied Git-ignored paths, except for a fixed
list of heavy directory names. A large repository therefore used much
more time and disk space than the same repository in an anchor
workspace.

**Expected behavior**
Referenced-project staging should exclude the same Git-ignored paths
that the workspace staging path excludes.

**Steps to reproduce**
1. Create a referenced project with a large Git-ignored directory.
2. Start a sandbox or SSH run that stages the referenced project.
3. Observe that the ignored directory enters the staged content.

**Paperclip version or commit**
Commit `9964b034bbff24e700c8eccf5a8b1fc3daa44bf2`.

**Deployment mode**
Built from source.

## What Changed

- Resolve each referenced project's Git-ignored paths once before
staging.
- Carry the resolved paths as a required field on
`SandboxAdditionalSource`.
- Reuse the resolved paths in sandbox staging, SSH staging, and
content-signature code.
- Harden the read-only Git helper with a bounded process, a reduced
environment, and disabled system and global configuration.
- Fail closed on Git errors, timeouts, and invalid path relations.
- Escape tar glob metacharacters in ignore-derived exclude entries.
- Add and update unit tests for the resolver and its three consumers.

## Verification

- `pnpm vitest run --config packages/adapter-utils/vitest.config.ts`
passes 266 tests locally.
- `pnpm exec tsc --noEmit -p packages/adapter-utils/tsconfig.json`
passes locally.
- CI must pass on this pull request.
- Greptile must report 5/5 with no unresolved comments before merge.

## Risks

- A Git error or timeout now prevents staging for the affected
referenced project.
- The resolver uses a bounded read-only Git process and fails closed by
design.
- The change stays inside `packages/adapter-utils` and does not change
the database schema.

## Model Used

Claude Sonnet 5 (Anthropic) assisted the implementation with code
execution and tool use. The exact context window and reasoning mode are
not recorded.

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have searched GitHub for duplicate or related PRs and linked
them above
- [x] I have either (a) linked existing issues with `Fixes: #` /
`Closes: #` / `Refs: #` OR (b) described the issue in-PR following the
relevant issue template
- [x] I have not referenced internal/instance-local Paperclip issues or
links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip`
URLs)
- [x] My branch name describes the change (e.g. `docs/...`, `fix/...`)
and contains no internal Paperclip ticket id or instance-derived details
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [x] All Paperclip CI gates are green
- [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups
- [x] I will address all Greptile and reviewer comments before
requesting merge

---------

Co-authored-by: Paperclip <noreply@paperclip.ing>
2026-08-25 14:22:47 -07:00
Nicky LeachandPaperclip 3e28d64a72 fix(plugin-worker-manager): queue and replay pre-bind login pseudo-terminal frames (#12173)
## Thinking Path

> - Paperclip routes plugin worker messages to agent sessions.
> - The login pseudo-terminal route opens after the host receives the
open reply.
> - `readline` can deliver later frames from the same pipe read before
that reply continuation runs.
> - The host dropped early output and exit frames.
> - The fix queues valid early frames, preserves arrival order, and
replays them after the route opens.
> - The route uses bounded memory and closes fail-closed when a bound
breaks.
> - The final tests also pin child issue ordering so the serialized
suite remains deterministic.

## Linked Issues or Issue Description

Fixes #12122

## What Changed

- Add a bounded queue for login pseudo-terminal output and exit frames
during route opening.
- Validate session ids, chunk types, and per-chunk limits before queue
insertion.
- Bound the queue by 10,000 frames and 8 MiB of characters.
- Charge retained worker session identifiers against the character
bound.
- Preserve arrival order and stop replay after the first valid exit.
- Drop repeated exits without changing the first exit position or code.
- Bound the repeat-exit lookup and clear queued state on all terminal
paths.
- Add regression tests and fixture support for coalesced frames,
ordering, limits, cleanup, and log safety.
- Pin issue numbers in the child-wake test so its expected child order
remains deterministic.

## Verification

- Build the plugin SDK with `pnpm --filter @paperclipai/plugin-sdk
build`.
- Run `npx vitest run
server/src/__tests__/plugin-worker-manager.test.ts` from the repository
root.
- Run `npx vitest run server/src/__tests__/issues-service.test.ts` from
the repository root.
- The focused plugin worker suite passes 66 of 66 tests at the prior
reviewed head.
- The issue service file passes 120 of 120 tests in two isolated runs at
the current head.
- Confirm that GitHub Actions passes all required checks.
- Confirm that Greptile reports 5/5 with no unresolved review threads.
- Storybook visual regression remains skipped because the PR has no
`storybook-visual` label.

## Risks

- The queue adds bounded memory use while the login pseudo-terminal
route opens.
- A queue limit breach closes the route and prevents unbounded
buffering.
- A hostile worker can fail only its own login route when it breaches a
bound.
- The first valid exit closes the route, so later records do not reach
the session.
- The child-wake test now uses distinct issue numbers to match the
service sort contract.

## Model Used

OpenAI Codex, GPT-5, extended reasoning, tool use, and code review
support. The runtime does not expose a separate context-window value.

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used with version and capability
details
- [x] I have checked ROADMAP.md and confirmed that this PR does not
duplicate planned core work
- [x] I have searched GitHub for duplicate or related PRs and linked
them above
- [x] I have linked the existing public issue with `Fixes: #12122`
- [x] I have not referenced internal Paperclip issues or links
- [x] My branch name describes the change and contains no internal
ticket id
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [x] I have updated relevant documentation where needed
- [x] I have considered and documented risks above
- [x] All required Paperclip CI gates are green
- [x] Greptile is 5/5 with no unresolved review threads
- [x] I will address all Greptile and reviewer comments before
requesting merge

---------

Co-authored-by: Paperclip <noreply@paperclip.ing>
2026-08-25 13:42:13 -07:00
Nicky LeachandPaperclip 2862e18484 refactor(adapter-utils): remove the retired duplex_v1 sandbox bridge transport (#12171)
## Thinking Path

> - Paperclip is the open source app people use to manage AI agents for
work
> - The adapter utilities provide sandbox transport paths for agent
execution
> - The retired `duplex_v1` path remains in host, gateway, and test code
after `http2_v1` replaced it
> - Retired transport code adds maintenance cost and leaves an unsafe
fallback for unknown gateway modes
> - This pull request removes the retired path, moves shared `http2_v1`
contracts to a leaf module, and closes mode dispatch to a fixed
allowlist
> - The benefit is a smaller transport surface and explicit failure for
unsupported modes

## Linked Issues or Issue Description

Refs #12120

The `http2_v1` transport replaced `duplex_v1`, but the retired broker,
gateway, constants, and tests remain in the adapter utilities. An
unknown bridge mode can also fall through to the queue gateway when a
queue directory exists. This change removes the retired code and rejects
unsupported modes before gateway selection.

## What Changed

- Delete the host `duplex_v1` broker and its transport-only tests.
- Delete the in-sandbox duplex gateway and retired mode constants.
- Move shared `http2_v1` symbols into `bridge-transport-contract.ts`.
- Update the remaining importers and repair their focused tests.
- Validate bridge modes against `http2_v1` and `queue_v1` before queue
lookup.
- Keep `queue_v1`, `duplex-frame-codec.ts`, and duplex telemetry
dimensions unchanged.

## Verification

- [x] `npx tsc --noEmit -p packages/adapter-utils` passes.
- [x] `npx vitest run packages/adapter-utils/src` passes: 48 files and
968 tests pass, with 4 pre-existing platform skips.
- [x] Full CI is green on this pull request.
- [x] Greptile review is complete and every finding is resolved.

## Risks

The change removes an internal transport that no host path selects. The
main risk is an overlooked import or test dependency. Targeted typecheck
and tests cover the adapter utility package. Full CI must confirm
workspace-wide compatibility.

## Model Used

Anthropic Claude Sonnet 5 assisted with the implementation, as recorded
in the commit. The commit does not record a context-window size or
reasoning mode.

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have searched GitHub for duplicate or related PRs and linked
them above
- [x] I have either (a) linked existing issues with `Fixes: #` / `Closes
#` / `Refs #` OR (b) described the issue in-PR following the relevant
issue template
- [x] I have not referenced internal/instance-local Paperclip issues or
links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip`
URLs)
- [x] My branch name describes the change (e.g. `docs/...`, `fix/...`)
and contains no internal Paperclip ticket id or instance-derived details
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [x] All Paperclip CI gates are green
- [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups
- [x] I will address all Greptile and reviewer comments before
requesting merge

Co-authored-by: Paperclip <noreply@paperclip.ing>
2026-08-25 08:47:43 -07:00
Nicky LeachandPaperclip 02a984068c refactor(adapter-utils): clean up the HTTP/2 bridge request-body bounds (#12166)
## Thinking Path

> - Paperclip is the open source app people use to manage AI agents for
work
> - Agent adapters use the HTTP/2 bridge to carry requests and responses
> - The bridge has an idle bound and a total-lifetime ceiling for
request bodies
> - The old renewable lifetime bound re-armed with each DATA chunk and
could not act before the idle bound
> - The code also repeated the same bounds and rationale in several
places
> - This pull request removes the unreachable renewable bound, keeps the
one-shot ceiling, and simplifies the shared bounds object
> - The benefit is clearer protection logic with the same default
request-body behavior

## Linked Issues or Issue Description

**What existing behavior does this improve?**

The HTTP/2 bridge request-body reader uses several repeated bound
parameters and comments. One renewable lifetime bound cannot act before
the idle bound under the shipped defaults.

**Subsystem affected**

`packages/adapter-utils/` — HTTP/2 bridge adapter utilities.

**Current behavior**

The idle bound and renewable lifetime bound both re-arm after each DATA
chunk. The renewable bound therefore does not act on its own. The
total-lifetime ceiling also shares timer setup with the renewable bound.

**Proposed behavior**

Remove the renewable lifetime bound. Keep the total-lifetime ceiling as
an independent one-shot timer. Pass one bounds object to the bridge call
sites and keep tests for the idle bound and total-lifetime ceiling.

**Reason and benefit**

The change removes unreachable logic and repeated rationale. It keeps
the independent total-lifetime protection and makes the bound behavior
easier to review.

**Breaking changes**

The change removes two public constant and option names that
repository-wide search found unused outside this implementation. The
shipped default behavior does not change.

## What Changed

- Remove the renewable request-body lifetime bound and its public names.
- Keep the total-lifetime ceiling as a one-shot timer that starts when
the body read starts.
- Replace repeated bound parameters with one `Http2BridgeBodyBounds`
object.
- De-duplicate bound rationale comments.
- Add shared test helpers and update tests for the idle bound and
total-lifetime ceiling.

## Verification

- Run `npx tsc --noEmit -p packages/adapter-utils`.
- Run `npx vitest run
packages/adapter-utils/src/http2-bridge-server.test.ts`.
- Wait for the pull request CI checks.
- Request the Greptile review and confirm a 5/5 verdict with no open
findings.

## Risks

The main risk is an incorrect timer lifetime after the renewable timer
removal. The one-shot ceiling remains independent, and the updated tests
cover its expiry and cleanup paths. The change does not alter the
shipped default bounds.

## Model Used

OpenAI Codex based on GPT-5. Exact runtime model version is GPT-5. The
work used tool calls and code execution for repository inspection and
GitHub operations.

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have searched GitHub for duplicate or related PRs and linked
them above
- [x] I have either (a) linked existing issues with `Fixes: #` / `Closes
#` / `Refs #` OR (b) described the issue in-PR following the relevant
issue template
- [x] I have not referenced internal/instance-local Paperclip issues or
links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip`
URLs)
- [x] My branch name describes the change (e.g. `docs/...`, `fix/...`)
and contains no internal Paperclip ticket id or instance-derived details
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [x] All Paperclip CI gates are green
- [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups
- [x] I will address all Greptile and reviewer comments before
requesting merge

Co-authored-by: Paperclip <noreply@paperclip.ing>
2026-08-25 08:09:52 -07:00
Nicky LeachandPaperclip 445547c989 feat(duplex): run the Daytona sandbox callback bridge over Node HTTP/2 (#12120)
## Thinking Path

> - Paperclip is the open source app people use to manage AI agents for
work
> - Sandbox providers carry agent work through controlled execution
channels
> - The Daytona callback bridge uses a bespoke line-framed protocol over
its duplex channel
> - The bespoke protocol adds framing work and does not use the Node
transport that already supports multiplexed streams
> - This pull request carries raw bytes across the channel, adds a Node
HTTP/2 bridge, and selects it for Daytona
> - The benefit is one authenticated, multiplexed callback session with
queue_v1 as the bounded fallback

## Linked Issues or Issue Description

**Subsystem affected**

The packages/plugins Daytona provider and the shared duplex execution
path.

**Problem or motivation**

The Daytona callback bridge uses a bespoke line-framed protocol over the
provider duplex channel. This adds protocol work and limits stream
handling.

**Proposed solution**

Carry raw bytes through the cross-layer channel. Add an authenticated
Node HTTP/2 host server and sandbox client gateway. Select http2_v1 for
Daytona and retain queue_v1 as the fallback.

**Alternatives considered**

Keep the current duplex_v1 protocol. This keeps the bespoke framing path
and does not provide one HTTP/2 session for callback streams.

**Roadmap alignment**

ROADMAP.md lists Daytona under cloud and sandbox agents. This change
improves the shipped Daytona provider path.

**Additional context**

The branch adds no dependency. Node 24 provides the http2 module. The
host token check and canonical path parser remain the single dispatch
path.

## What Changed

- Carry raw Uint8Array chunks through the adapter, plugin, worker,
runtime, and Daytona layers.
- Encode bytes as base64 only across the JSON-RPC hop, because JSON has
no binary type.
- Add the bounded host HTTP/2 server and the in-sandbox HTTP/2 client
gateway.
- Authenticate every stream with the per-run bridge token before route
work.
- Parse the path once and reuse the canonical result for route and
forwarding work.
- Select http2_v1 for Daytona and fall back once to queue_v1 when the
client preface is absent.
- Add transport, session, stream, and fallback telemetry.
- Mark HTTP/2 as the preferred transport and queue_v1 as the
soft-deprecated fallback.

## Verification

- `npx vitest run packages/adapter-utils/src` — 990 passed and 4
skipped.
- `npx vitest run
server/src/__tests__/plugin-worker-manager-duplex.test.ts` — 32 passed.
- `npx vitest run --config
packages/plugins/sandbox-providers/daytona/vitest.config.ts` — 220
passed and 6 skipped.
- `npx tsc --noEmit` in `packages/adapter-utils`, `packages/shared`,
`packages/plugins/sdk`, and `server` — clean.
- No `package.json` or `pnpm-lock.yaml` file changed.
- The live Daytona test skips when `DAYTONA_API_KEY` is absent.
- The root `npx tsc --noEmit` command has a pre-existing missing
`packages/adapters/droid-local` reference on this branch and on
`master`.

## Risks

- The transport change affects several duplex layers and could expose
byte-boundary errors.
- A missing HTTP/2 client preface falls back once to queue_v1 and
records `preface_missing`.
- The host token check and canonical path parser must remain on the
shared dispatch path.
- The live Daytona test needs `DAYTONA_API_KEY` and does not run in this
agent sandbox.

## Model Used

OpenAI GPT-5, tool-enabled coding agent with repository inspection,
GitHub CLI, and shell execution.

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have searched GitHub for duplicate or related PRs and linked
them above
- [x] I have either (a) linked existing issues with `Fixes: #` / `Closes
#` / `Refs #` OR (b) described the issue in-PR following the relevant
issue template
- [x] I have not referenced internal/instance-local Paperclip issues or
links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip`
URLs)
- [x] My branch name describes the change (e.g. `docs/...`, `fix/...`)
and contains no internal Paperclip ticket id or instance-derived details
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [x] All Paperclip CI gates are green
- [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups
- [x] I will address all Greptile and reviewer comments before
requesting merge

---------

Co-authored-by: Paperclip <noreply@paperclip.ing>
2026-08-25 07:35:39 -07:00
Nicky LeachandPaperclip b6854e61c7 refactor(adapter-utils): rename EffectiveSandboxCapabilities to EffectiveExecutionCapabilities (#12119)
## Thinking Path

> - Paperclip is the open source app people use to manage AI agents for
work
> - The adapter utilities package defines shared types for agent
execution targets
> - The type name EffectiveSandboxCapabilities describes only one
transport
> - All execution target drivers return the same resolved capability
snapshot
> - This pull request gives the snapshot a general name and keeps the
old type as a deprecated alias
> - The benefit is clearer public vocabulary with source compatibility
for current consumers

## Linked Issues or Issue Description

**What existing behavior does this improve?**

The exported capability snapshot type uses the name
`EffectiveSandboxCapabilities`, although local, SSH, sandbox, and plugin
drivers return it.

**Subsystem affected**

The change affects `packages/adapter-utils` and its server consumers.

**Current behavior**

The public type name points to the sandbox transport. The private parser
also uses the sandbox-only name.

**Proposed behavior**

Use `EffectiveExecutionCapabilities` for the public type and
`parseEffectiveExecutionCapabilities` for the private parser. Keep a
deprecated alias for the old public type.

**Reason and benefit**

The new name matches the established execution-target vocabulary. The
alias keeps existing type imports working during the migration.

**Breaking changes**

None. The runtime field, capability flags, parsed shape, and package
versions do not change.

**Additional context**

GitHub search found no duplicate or related open issue or pull request.

## What Changed

- Rename the exported interface to `EffectiveExecutionCapabilities`.
- Keep `EffectiveSandboxCapabilities` as a deprecated type alias.
- Rename the private parser and update its call site and references.
- Add a type-level test for the deprecated alias.

## Verification

- `npx tsc --noEmit -p packages/adapter-utils`
- `npx vitest run
packages/adapter-utils/src/execution-target-sandbox.test.ts`
- `npx vitest run
server/src/__tests__/environment-execution-target-capabilities.test.ts
server/src/__tests__/environment-execution-target-duplex.test.ts`
- The local checks passed with 133 adapter-utils tests and 31 server
tests.
- Reviewers can confirm that the runtime field and capability flags stay
unchanged.

## Risks

Low risk. The alias protects existing type imports. The change does not
alter runtime behavior or serialized data.

## Model Used

OpenAI Codex, GPT-5, tool use and code execution. The runtime does not
expose the context window size.

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have searched GitHub for duplicate or related PRs and linked
them above
- [x] I have either (a) linked existing issues with `Fixes: #` / `Closes
#` / `Refs #` OR (b) described the issue in-PR following the relevant
issue template
- [x] I have not referenced internal/instance-local Paperclip issues or
links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip`
URLs)
- [x] My branch name describes the change (e.g. `docs/...`, `fix/...`)
and contains no internal Paperclip ticket id or instance-derived details
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [x] All Paperclip CI gates are green
- [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups
- [x] I will address all Greptile and reviewer comments before
requesting merge

---------

Co-authored-by: Paperclip <noreply@paperclip.ing>
2026-08-25 07:13:55 -07:00
Nicky LeachandPaperclip d1573244b5 refactor: disambiguate the Telemetry and Observability data paths (#12128)
## Thinking Path

> - Paperclip is the open source app people use to manage AI agents for
work
> - Paperclip records first-party events, OpenTelemetry data, and local
run-log events
> - The code and documents used one term for these three data paths
> - This naming made the required review level unclear
> - This pull request names each data path in the module names,
documents, and code comments
> - The benefit is a clear review rule without a runtime change

## Linked Issues or Issue Description

**Issue type**

Unclear or confusing.

**Where is the issue?**

`packages/shared/src/telemetry/README.md`, `doc/observability.md`,
`doc/run-log-events.md`, and the duplex instrumentation modules.

**What's wrong?**

The repository used Telemetry for first-party events, OpenTelemetry
data, and local run-log events. This usage made the data path and review
level unclear.

**Suggested fix**

Use Telemetry only for Paperclip first-party events. Use Observability
for OpenTelemetry data. Use the run log for rows in
`heartbeat_run_events`.

Related public pull requests: #8476 and #9672.

## What Changed

- Rename the duplex instrumentation modules and identifiers from
`Telemetry` to `Observability`.
- Move the Observability and run-log contracts out of the Telemetry
README.
- Add `doc/observability.md` and `doc/run-log-events.md` as the
canonical documents.
- Add a file-path review rule to `AGENTS.md`.
- Correct the remaining code comments that name the wrong data path.
- Keep all event names, payloads, database records, spans, configuration
keys, environment variables, and runtime paths unchanged.

## Verification

- `npx vitest run packages/shared/src/telemetry/readme-contract.test.ts`
passes.
- `npx vitest run packages/adapter-utils/src/published-exports.test.ts`
passes.
- `npx vitest run
packages/adapter-utils/src/acpx-engine/startup-timing.test.ts` passes
with 42 tests.
- `pnpm --filter @paperclipai/adapter-utils typecheck` passes.
- `pnpm --filter server typecheck` passes.
- The old module name does not remain in TypeScript or JSON files,
except for the intentional publication guard.
- CI and Greptile checks remain pending after PR creation.

## Risks

- The old duplex module subpath no longer has a compatibility shim. The
board accepted this intentional hard break.
- The new duplex module subpath stays blocked from package publication.
- The change has no runtime effect. The main risk is an incorrect
document or module reference.

## Model Used

OpenAI GPT-5 Codex, exact model ID `gpt-5`, with tool use and code
review support.

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have searched GitHub for duplicate or related PRs and linked
them above
- [x] I have described the issue in-PR with the documentation issue
fields
- [x] I have not referenced internal/instance-local Paperclip issues or
links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip`
URLs)
- [x] My branch name describes the change and contains no internal
Paperclip ticket id or instance-derived details
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [x] All Paperclip CI gates are green
- [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups
- [x] I will address all Greptile and reviewer comments before
requesting merge

---------

Co-authored-by: Paperclip <noreply@paperclip.ing>
2026-08-24 16:42:33 -07:00
Nicky LeachandPaperclip a14e51d592 refactor(environment): classify environment capabilities from static driver definitions (#12045)
## Thinking Path

> - Paperclip is the open source app people use to manage AI agents for
work
> - Environment runtime drivers provide workspace, lease, and custom
image behavior
> - Runtime code used driver identity checks and several
capability-specific members
> - These checks spread capability rules across the runtime and made new
drivers harder to verify
> - This pull request adds one general capability classifier and one
static driver support table
> - The benefit is one fail-closed capability model that keeps current
behavior and supports future drivers

## Linked Issues or Issue Description

**What existing behavior does this improve?**

Environment runtime capability checks for workspace realization, custom
images, lease capabilities, and duplex authorization.

**Subsystem affected**

Cross-cutting (multiple of the above)

**Current behavior**

The runtime selects several capability paths from driver identity and
separate capability members. Custom image gates also trust provider
declarations without checking every matching live worker method.

**Proposed behavior**

The runtime uses one general capability classifier and one static
support table. Custom image gates require both the provider declaration
and every matching live worker method. The public capability names
remain unchanged.

**Reason and benefit**

The change keeps capability rules in one place. It removes identity
conditions from runtime consumers and makes unsupported drivers fail
closed.

**Breaking changes**

None. The public names sandboxCapabilities, sandboxProviders, and
EffectiveSandboxCapabilities remain available.

## What Changed

- Add classifyEnvironmentCapabilities and static support definitions for
all four driver families.
- Add resolveCapabilities to every environment runtime driver.
- Move driver traits into environment-driver-traits.ts and migrate
runtime consumers.
- Require provider declarations and matching live worker methods for all
custom image gates.
- Migrate duplex authorization to the general resolver and remove the
dead sandbox-only member.
- Delete the unused resolveEffectiveSandboxCapabilities wrapper and
update its test.

## Verification

- pnpm --filter @paperclipai/server typecheck
- pnpm exec vitest run
server/src/__tests__/environment-capability-contract.test.ts
server/src/__tests__/environment-runtime.test.ts — 92 tests pass
- pnpm exec vitest run
server/src/__tests__/environment-driver-traits.test.ts
server/src/__tests__/general-capability-classifier.test.ts — 12 tests
pass
- pnpm exec vitest run
server/src/__tests__/environment-custom-images-service.test.ts
server/src/__tests__/environment-execution-target-capabilities.test.ts
server/src/__tests__/environment-execution-target-duplex.test.ts
server/src/__tests__/environment-execution-target-duplex-kill-switch.test.ts
— 66 tests pass

## Risks

The main risk is a capability gate that denies a valid driver or permits
an invalid driver. The static support matrix, live worker method checks,
and regression tests reduce this risk. No database, public API, or
published type name changes.

## Model Used

OpenAI Codex, GPT-5, with tool use and code execution. The deployment
does not provide a separate context-window value.

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have searched GitHub for duplicate or related PRs and linked
them above
- [x] I have either (a) linked existing issues with Fixes: # / Closes #
/ Refs # OR (b) described the issue in-PR following the relevant issue
template
- [x] I have not referenced internal/instance-local Paperclip issues or
links (only public GitHub #NNN / github.com/paperclipai/paperclip URLs)
- [x] My branch name describes the change (for example, docs/... or
fix/...) and contains no internal Paperclip ticket id or
instance-derived details
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [x] All Paperclip CI gates are green
- [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups
- [x] I will address all Greptile and reviewer comments before
requesting merge

---------

Co-authored-by: Paperclip <noreply@paperclip.ing>
2026-08-23 21:24:59 -07:00
Nicky LeachandPaperclip 63df7ad2b3 feat(login): use the login pseudo-terminal for Codex device login and de-Claude the shared channel (#12020)
## Thinking Path

> - Paperclip is the open source app people use to manage AI agents for
work
> - Agent adapters use provider-specific login flows
> - Codex device login needs a live pseudo-terminal (PTY), while the
shared channel still uses Claude-specific names
> - The old streamed-exec path does not provide the prompt transport
that Codex needs
> - This pull request moves Codex device login to the shared login PTY
and removes the dead streamed-exec path
> - The benefit is one controlled login transport with fail-closed
capability checks and safer credential reads

## Linked Issues or Issue Description

**Problem or motivation**

Codex device login used a streamed-exec path that did not provide the
required prompt transport. The shared login channel also exposed
Claude-specific names outside Claude code.

**Expected behavior**

The host selects a fixed login command from trusted adapter data. Codex
login uses the provider login PTY. Providers without that capability
fail closed.

**Proposed solution**

Use a server-controlled session home, create and validate it as a fresh
0700 directory, read credentials from one validated descriptor, and
rename shared channel names to the neutral login PTY family.

**Alternatives considered**

Keep the shared login PTY as the single transport. Do not keep the
removed streamed-exec path because it cannot provide the required prompt
transport.

**Roadmap alignment**

This change supports the planned login transport work. It does not add a
separate roadmap item.

## What Changed

- Route Codex device login through the shared login PTY transport.
- Select the login command from a closed internal command key.
- Carry a server-controlled session home through the launch contract.
- Create and validate the session home as a fresh 0700 directory owned
by the login user.
- Read the credential file with descriptor-relative, no-follow path
walking and final descriptor checks.
- Gate the login route and run lease on the provider login PTY
capability.
- Rename shared channel names to the neutral login PTY family.
- Remove the streamed-exec transport value, selector field, driver
branch, and related tests.
- Hide Codex login in the user interface when the provider lacks the
login PTY capability.

## Verification

- Server unit suites pass: 89/89.
- Adapter-utils suites pass: 262/262.
- Codex-local suites pass: 326/326.
- Credential-read reader suite passes: 20/20.
- Daytona login PTY suite passes: 30/30.
- Device-login suites pass: 56/56.
- TypeScript checks pass for server, adapter-utils, and UI.
- GitHub Actions must pass after pull request creation.
- Greptile review must reach 5/5 with no open P2 findings,
recommendations, or follow-ups.

## Risks

- Providers without a login PTY capability lose Codex login support by
design.
- The credential read rejects invalid ownership, mode, type, path, and
size.
- The launch-time sandbox directory race remains outside the threat
model because the login runs inside the sandbox and a hostile sandbox
already controls its credential.

## Model Used

OpenAI Codex, GPT-5, tool use and code review assistance. The exact
context window and reasoning mode are not exposed by the runtime.

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have searched GitHub for duplicate or related PRs and linked
them above
- [x] I have either (a) linked existing issues with `Fixes: #` / `Closes
#` / `Refs #` OR (b) described the issue in-PR following the relevant
issue template
- [x] I have not referenced internal/instance-local Paperclip issues or
links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip`
URLs)
- [x] My branch name describes the change (e.g. `docs/...`, `fix/...`)
and contains no internal Paperclip ticket id or instance-derived details
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [x] All Paperclip CI gates are green
- [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups
- [x] I will address all Greptile and reviewer comments before
requesting merge

---------

Co-authored-by: Paperclip <noreply@paperclip.ing>
2026-08-23 09:44:59 -07:00
Nicky LeachandPaperclip 16b59c9315 feat(adapter-utils): stream duplex bridge bodies as sequenced chunks with receive-side spill (#12006)
## Thinking Path

> - Paperclip is the open source app people use to manage AI agents for
work
> - Agent adapters use a duplex bridge to send requests and responses
across an isolated boundary
> - The bridge held each request body and response body in memory on
both ends
> - Large bodies can exhaust memory and reduce the safe size of adapter
traffic
> - This pull request sends receive-side bodies as sequenced chunks and
spills large bodies to disk
> - The benefit is bounded memory use with strict size, order, and
cleanup checks

## Linked Issues or Issue Description

**What existing behavior does this improve?**

The adapter-utils duplex bridge transports request and response bodies
across the sandbox boundary.

**Current behavior**

The bridge stores each complete body in memory on both ends of the
duplex channel.

**Proposed behavior**

The bridge sends body chunks with sequence checks. The receive side
keeps bodies up to 1 MiB in memory and spills larger bodies to a
temporary file.

**Reason and benefit**

This change reduces memory pressure and keeps malformed or oversized
input on a terminal error path.

**Breaking changes**

The duplex frame version changes to version 2. The request and response
envelopes now carry bodyByteCount, and body_chunk frames carry the body
data.

## What Changed

- Add version 2 body_chunk frames with 256 KiB raw slices encoded as
canonical base64 text.
- Add receive-side memory and spill reassembly with per-channel disk and
file limits.
- Reject malformed, reordered, oversized, truncated, and non-canonical
body chunks.
- Stream reassembled request bodies to the host forward handler with a
web stream and half-duplex request.
- Remove spill files on success, failure, channel death, and startup
cleanup.

## Verification

- Run the adapter-utils type-check.
- Run the adapter-utils duplex test suite.
- Run all pull request checks.
- Run the Greptile review and confirm a 5/5 score with no open findings.

## Risks

The wire format changes from version 1 to version 2. Older bridge peers
cannot use this protocol. The receive path adds temporary file
operations and cleanup paths. The implementation fails closed when a
body violates size or sequence rules.

## Model Used

OpenAI GPT-5 Codex, tool-enabled coding agent. The exact context-window
size and reasoning mode are not exposed by the runtime.

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have searched GitHub for duplicate or related PRs and linked
them above
- [x] I have either (a) linked existing issues with Fixes: # / Closes #
/ Refs # OR (b) described the issue in-PR following the relevant issue
template
- [x] I have not referenced internal/instance-local Paperclip issues or
links (only public GitHub #NNN / github.com/paperclipai/paperclip URLs)
- [x] My branch name describes the change (e.g. docs/..., fix/...) and
contains no internal Paperclip ticket id or instance-derived details
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [x] All Paperclip CI gates are green
- [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups
- [x] I will address all Greptile and reviewer comments before
requesting merge

---------

Co-authored-by: Paperclip <noreply@paperclip.ing>
2026-08-23 08:52:31 -07:00
Nicky LeachandPaperclip 05b35d4669 feat(duplex): bound aggregate duplex route resource consumption with a process-owned byte ledger (#12003)
## Thinking Path

> - Paperclip runs AI agents through adapters and sandboxed execution
targets.
> - Duplex routes retain bytes across route data, broker messages,
decoder buffers, and readiness replay.
> - Per-route limits bound each route but do not bound the total
retained bytes across many routes.
> - A process-owned ledger must charge each retained buffer before
allocation and release the charge during cleanup.
> - This pull request adds the aggregate ledger, connects it to host and
sandbox duplex paths, and adds route coverage.
> - The benefit is a fail-closed process-wide byte limit that keeps
concurrent duplex work within a safe resource budget.

## Linked Issues or Issue Description

**Subsystem affected**

This change affects packages/adapter-utils and server duplex
orchestration.

**Problem or motivation**

Many routes can each stay below their per-route limits while their
combined retained bytes exceed a safe process budget.

**Proposed solution**

Add a process-owned aggregate byte ledger. Charge route data, broker
bytes, decoder buffers, and readiness replay bytes before allocation.
Release each charge during cleanup. Use a separate sandbox_process
decoder cap for the in-sandbox path.

**Alternatives considered**

Keep only per-route limits. This does not bound the combined process
use. Set a fixed limit at one call site. This misses retained bytes in
other duplex paths.

**Roadmap alignment**

This is a tightly scoped reliability and resource-safety improvement. It
does not duplicate a roadmap feature.

**Additional context**

The aggregate ceiling uses a safe 256 MiB default. An invalid override
falls back to that default and reports the rejected value.

## What Changed

- Add a process-owned aggregate byte ledger for duplex route resource
use.
- Charge and release route data, broker forward and response bytes,
decoder buffers, and readiness replay bytes.
- Bound host-to-worker pending writes and standard input transport
bytes.
- Add a separate decoder cap for the sandbox_process path.
- Make invalid aggregate-ceiling overrides fall back to the safe default
without host startup failure.
- Add adapter-utils and server tests for charging, release, rejection,
cleanup, and many-route aggregate limits.

## Verification

- pnpm --filter @paperclipai/adapter-utils exec tsc --noEmit
- pnpm --filter @paperclipai/server exec tsc --noEmit
- Run the focused adapter-utils duplex ledger and execution-target
tests.
- Run the server aggregate-ledger route test.
- Confirm all required pull request checks pass on this branch.

## Risks

The ledger touches several duplex buffer paths. A missed release could
reduce later capacity until process restart. The tests cover charge,
release, rejection, cleanup, and route aggregation. The change uses a
safe default when configuration input is invalid.

## Model Used

OpenAI GPT-5 Codex. The runtime model ID and context window are not
exposed to this task. The model used tool calls, shell commands, and
code review workflow support.

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have searched GitHub for duplicate or related PRs and linked
them above
- [x] I have either (a) linked existing issues with Fixes/Closes/Refs OR
(b) described the issue in-PR following the relevant issue template
- [x] I have not referenced internal/instance-local Paperclip issues or
links (only public GitHub issue references)
- [x] My branch name describes the change and contains no internal
Paperclip ticket id or instance-derived details
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [x] All Paperclip CI gates are green
- [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups
- [x] I will address all Greptile and reviewer comments before
requesting merge

---------

Co-authored-by: Paperclip <noreply@paperclip.ing>
2026-08-22 22:14:35 -07:00
Nicky LeachandPaperclip c5050396c7 fix(daytona-duplex): chunk host-to-sandbox writes and make a transport close legible (#11986)
## Thinking Path

> - Paperclip is the open source app people use to manage AI agents for
work
> - Paperclip runs agent work through adapters and sandbox providers
> - The Daytona duplex path sends host input through a provider
pseudo-terminal WebSocket
> - Large messages exceed the provider limit, and a transport close can
look like a process exit
> - This pull request chunks UTF-8 input and carries transport-close
state through the duplex path
> - The benefit is reliable large input and accurate loss reporting

## Linked Issues or Issue Description

**What happened?**

The Daytona duplex path sent a full input payload as one WebSocket
message. A payload above the provider limit closed the channel. The wait
path also mapped a non-numeric exit result to a process exit without
exit data.

**Expected behavior**

The provider must receive large input as ordered UTF-8 chunks. A
transport close without exit data must record `transport_closed`, while
a numeric exit must record `provider_exit`.

**Steps to reproduce**

1. Start a Daytona duplex session.
2. Send an input payload larger than 65536 bytes.
3. Observe that one message closes the provider channel.
4. End a session without a numeric exit code.
5. Observe that the loss reason reports a process exit.

**Paperclip version or commit**

Commit `1761e79ec9097c65d94f90a8ba20416f8ab718a6`.

**Deployment mode**

Built from source with the Daytona sandbox provider.

## What Changed

- Add a shared UTF-8 byte chunker with a 32768-byte cap.
- Route both Daytona pseudo-terminal write paths through the chunker.
- Preserve multi-byte UTF-8 sequences across read-side chunks.
- Carry an explicit `transportClosed` state through the worker and host
wait paths.
- Record `transport_closed` for a reason-less transport close and
`provider_exit` for a numeric exit.
- Keep orderly completion suppression for both exit paths.

## Verification

- The Daytona plugin suite passes 194 tests.
- The adapter-utils broker, codec, and telemetry suites pass 73 tests.
- The plugin SDK duplex and worker RPC host suites pass 37 tests.
- The server plugin worker manager duplex suite passes 78 tests.
- The execution target sandbox and ACPX execute suites pass 257 tests.
- TypeScript checks pass for adapter-utils, plugin SDK, server, and the
standalone Daytona plugin.

## Risks

The chunk size adds a loop for large input payloads. The 32768-byte cap
stays below the provider limit. The optional loss field preserves
compatibility for other providers.

## Model Used

OpenAI Codex, GPT-5, extended reasoning, tool use, and code execution.
The runtime does not expose a separate context-window value.

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have searched GitHub for duplicate or related PRs and linked
them above
- [x] I have either (a) linked existing issues with `Fixes: #` /
`Closes: #` / `Refs: #` OR (b) described the issue in-PR following the
relevant issue template
- [x] I have not referenced internal/instance-local Paperclip issues or
links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip`
URLs)
- [x] My branch name describes the change (e.g. `docs/...`, `fix/...`)
and contains no internal Paperclip ticket id or instance-derived details
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [x] All Paperclip CI gates are green
- [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups
- [x] I will address all Greptile and reviewer comments before
requesting merge

---------

Co-authored-by: Paperclip <noreply@paperclip.ing>
2026-08-22 16:35:47 -07:00
Nicky LeachandPaperclip 141b815294 fix(adapter-utils): enforce the duplex frame size bound on encode in both codec copies (#11983)
## Thinking Path

> - Paperclip uses adapter utilities to move bounded messages between
agent processes.
> - The duplex frame codec encodes and decodes these messages.
> - The decoder rejects frames above the documented byte limit.
> - The encoder did not apply the same limit before it sent a frame.
> - This mismatch let a sender write a frame that the peer rejected
after transmission.
> - This pull request applies the same byte limit to both codec copies
and keeps the broker channel open.
> - The benefit is a local error with stable request telemetry instead
of a channel loss.

## Linked Issues or Issue Description

No public GitHub issue exists for this change. The problem follows the
bug report fields below.

**What happened?**

The duplex encoder could write a frame larger than
`DEFAULT_MAX_DUPLEX_FRAME_BYTES`. The peer decoder then rejected the
frame after transmission. In the WebSocket 1009 case, this closed the
channel and reported a process exit.

**Expected behavior**

The encoder should reject an oversized frame before it writes bytes. The
gateway should return HTTP 413. The broker should return a bounded
terminal response and keep other requests active.

**Steps to reproduce**

1. Encode a duplex frame above `DEFAULT_MAX_DUPLEX_FRAME_BYTES`.
2. Send the frame through the gateway or broker.
3. Observe that the old path writes the frame or drops the channel after
peer rejection.

**Paperclip version or commit**

Reproduced from the `master` development line before this change.

**Deployment mode**

Local dev (`pnpm dev`).

## What Changed

- Add `encodeDuplexFrameChecked` to the host and embedded gateway
codecs.
- Measure encoded JSON bytes without the trailing newline.
- Return a typed `frame_too_large` result without throwing.
- Return HTTP 413 for oversized gateway requests without writing a
frame.
- Share one frame bound between broker decode and encode checks.
- Return a bounded, non-retryable terminal response for oversized broker
responses.
- Add encode vectors to the shared wire-compatibility fixture.

## Verification

- Run `pnpm --filter @paperclipai/adapter-utils typecheck`.
- Run `npx vitest run
packages/adapter-utils/src/duplex-frame-codec.test.ts
packages/adapter-utils/src/duplex-bridge-broker.test.ts
packages/adapter-utils/src/execution-target-sandbox.test.ts`.
- Confirm the oversized-response broker test keeps the channel open and
serves the other in-flight request.
- Confirm the gateway test returns HTTP 413 and keeps the channel open.

## Risks

The encoder now rejects oversized frames before transmission. This
changes an unsafe write into a typed local error. The broker and gateway
keep existing frame limits and affect only oversized frames.

## Model Used

OpenAI Codex, GPT-5, tool use and code execution. The model assisted
with review and repository operations.

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have searched GitHub for duplicate or related PRs and linked
them above
- [x] I have either (a) linked existing issues with `Fixes: #` / `Closes
#` / `Refs #` OR (b) described the issue in-PR following the relevant
issue template
- [x] I have not referenced internal/instance-local Paperclip issues or
links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip`
URLs)
- [x] My branch name describes the change (e.g. `docs/...`, `fix/...`)
and contains no internal Paperclip ticket id or instance-derived details
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [x] All Paperclip CI gates are green
- [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups
- [x] I will address all Greptile and reviewer comments before
requesting merge

---------

Co-authored-by: Paperclip <noreply@paperclip.ing>
2026-08-22 16:32:18 -07:00
Nicky LeachandPaperclip cc42a67e7e fix(adapter-utils): extend the duplex fail-closed run disposition to the CLI lane (#11966)
## Thinking Path

> - Paperclip is the open source app people use to manage AI agents for
work
> - Paperclip runs agents through adapter execution lanes
> - Duplex adapters can lose their control channel before a process
completes
> - The ACP lane already fails closed, but the CLI lane can report false
success
> - This pull request applies the same completion rule to the CLI lane
and shares the loss code
> - The benefit is consistent failure reporting when a duplex channel
closes during a run

## Linked Issues or Issue Description

**What happened?**

A CLI-lane duplex run can lose its control channel before clean process
completion. The run can then report `succeeded` with exit code 0 and no
error code.

**Expected behavior**

The execution target must fail closed when the channel dies before clean
completion. It must return exit code 1, the typed `duplex_channel_lost`
error code, and a short stderr note.

**Steps to reproduce**

1. Start a duplex adapter run through the CLI execution lane.
2. Close the duplex control channel before the process completes
cleanly.
3. Inspect the run result and error code.

**Paperclip version or commit**

Commit `5e01523d4eb6df4a20a0bddd05374c9c42225203`.

**Deployment mode**

Built from source.

**Installation method**

Built from source with pnpm.

**Agent adapter(s) involved**

Claude Code, Codex, Cursor, Gemini, Kimi, OpenCode, and Pi local
adapters.

**Database mode**

Not database-related.

## What Changed

- Add an optional `errorCode` field to `RunProcessResult`.
- Add a one-read completion seam to the execution target process
options.
- Fail closed when a duplex channel dies before clean process
completion.
- Add `settleRunDisposition()` to atomically read and mark orderly
completion.
- Share the typed duplex loss error code across the ACP and CLI lanes.
- Mark non-success terminal results as orderly completion before
teardown.
- Wire the seam through the seven duplex adapters.
- Add regression tests for channel loss, clean completion, and non-clean
terminal results.

## Verification

- `npx vitest run
packages/adapter-utils/src/execution-target-sandbox.test.ts` — 118
passed.
- `npx vitest run packages/adapter-utils/src/acpx-engine/execute.test.ts
-t "sandbox duplex run-disposition seam"` — 4 passed.
- The author confirmed a clean type-check for
`@paperclipai/adapter-utils` and the seven duplex adapter packages.
- Pre-existing environment failures remain outside this change. They
include `EACCES mkdir '/srv/paperclip'` and remote file-size setup
failures.

## Risks

The change alters terminal status for CLI duplex runs that lose control
before clean completion. The typed error code and stderr note keep the
failure visible. The broker marks failed, cancelled, and timed-out
results as orderly completion to prevent false loss events during
teardown.

## Model Used

OpenAI Codex, GPT-5, tool use and code execution, with the standard
GPT-5 context window. The model assisted with the implementation and
test work.

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have searched GitHub for duplicate or related PRs and linked
them above
- [x] I have either (a) linked existing issues with `Fixes: #` /
`Closes: #` / `Refs #` OR (b) described the issue in-PR following the
relevant issue template
- [x] I have not referenced internal/instance-local Paperclip issues or
links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip`
URLs)
- [x] My branch name describes the change (e.g. `docs/...`, `fix/...`)
and contains no internal Paperclip ticket id or instance-derived details
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [x] All Paperclip CI gates are green
- [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups
- [x] I will address all Greptile and reviewer comments before
requesting merge

---------

Co-authored-by: Paperclip <noreply@paperclip.ing>
2026-08-22 11:12:51 -07:00
Nicky LeachandPaperclip 10d2781a29 feat(sandbox): add the duplex bridge broker, gated transport selection, and fixed observability (#11769)
## Thinking Path

> - Paperclip is the open source app people use to manage AI agents for
work.
> - Sandbox adapters provide controlled execution for untrusted provider
environments.
> - The sandbox channel needs one persistent duplex transport with
strict host control.
> - The transport must remain off unless the instance setting and
provider capability both allow it.
> - The host must detect loss, bound resource use, and expose only safe
telemetry.
> - This pull request adds the broker, gated selection, kill-switch
wiring, fixed observability, and real-process proof.
> - The benefit is safer sandbox execution with bounded failure behavior
and inspectable transport results.

## Linked Issues or Issue Description

No public issue exists for this change. The related pull requests are
#11738 and #11750.

**Problem or motivation**

The sandbox duplex channel needs a host-controlled broker, strict
transport gates, bounded provider input, and safe loss telemetry.
Without these controls, a provider can cause replay, resource growth,
unsafe endpoint selection, or data exposure through telemetry.

**Proposed solution**

Add a host broker with nested time limits, request limits, one-shot
loss, and per-id deduplication. Select duplex transport only when the
instance setting and provider capability both equal true. Assign the
endpoint and nonce on the host. Reject invalid readiness data and use
the file bridge on failure. Add fixed redacted telemetry and a
real-process end-to-end test harness.

**Alternatives considered**

Keep the file bridge as the only transport. This avoids new channel
behavior but does not provide persistent duplex operation for supported
sandbox providers.

**Roadmap alignment**

This change supports the Cloud / Sandbox agents section in ROADMAP.md.

## What Changed

- Add the duplex bridge broker with bounded forward, response, and
gateway wait budgets.
- Bound concurrent requests, lifetime requests, and request-id bytes
before retention or forwarding.
- Select duplex transport only when both required gates are true.
- Assign the loopback port and nonce on the host and enforce a
liveness-only READY frame.
- Fall back to the file bridge after invalid readiness, contamination,
bind failure, or timeout.
- Carry the kill switch through the server, acpx engine, and six local
adapters.
- Add fixed, redacted duplex telemetry with a provider allowlist.
- Add a real-process end-to-end harness for readiness, round trips,
loss, and teardown.
- Add regression coverage for limits, loss, UTF-8 splits, concurrency,
and telemetry dimensions.

## Verification

- Adapter-utils, server, and Daytona typechecks pass locally.
- Adapter-utils tests pass, including the codec, broker,
execution-target sandbox, and real-process harness.
- Server kill-switch tests pass.
- Live Daytona tests pass with the required provider key and skip
without that key.
- The root pnpm-lock.yaml file has no diff.
- The branch contains ten commits after origin/master.

## Risks

- Duplex transport remains disabled unless both gates equal true.
- A provider remains an untrusted boundary and needs least-privilege
credentials and quotas.
- The server telemetry recorder stays deferred; the default recorder
does nothing.
- A provider that pre-binds the host port causes a fail-closed fallback
to the file bridge.
- The change adds no database migration and changes no root lockfile.

## Model Used

OpenAI GPT-5, exact model family GPT-5, large context window, reasoning,
and tool use. The model assisted with Git handoff validation and PR
preparation. The implementation commits came from the engineering
worktree.

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have searched GitHub for duplicate or related PRs and linked
them above
- [x] I have either (a) linked existing issues with Fixes: # / Closes #
/ Refs # OR (b) described the issue in-PR following the relevant issue
template
- [x] I have not referenced internal/instance-local Paperclip issues or
links (only public GitHub #NNN / github.com/paperclipai/paperclip URLs)
- [x] My branch name describes the change (e.g. docs/... or fix/...) and
contains no internal Paperclip ticket id or instance-derived details
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [x] All Paperclip CI gates are green
- [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups
- [x] I will address all Greptile and reviewer comments before
requesting merge
- [x] I searched the GitHub PR list for similar PRs and confirmed this
is not a duplicate

---------

Co-authored-by: Paperclip <noreply@paperclip.ing>
2026-08-22 09:01:31 -07:00
Nicky LeachandPaperclip 69590890d4 Fix remote-only workspace base refs and pre-adapter retry loops (#11892)
## Thinking Path

> - Paperclip is the open source app people use to manage AI agents for
work
> - Execution workspaces give each run an isolated directory and a
selected base ref
> - A remote-only base ref can fail before `git worktree add` when the
ref is not local
> - A setup failure before adapter dispatch must block the run without
an agent-only retry
> - This pull request resolves both remote-tracking ref forms and bounds
recovery for the same unresolved ref
> - The benefit is correct workspace setup and no repeated pre-adapter
recovery loop

## Linked Issues or Issue Description

This PR has no existing public issue. It addresses a workspace setup
bug.

**What happened?**

A remote-only base ref could fail before `git worktree add`. A setup
failure before adapter dispatch could also queue an agent-only
missing-comment retry.

**Expected behavior**

Paperclip must resolve `fix/foo` and `origin/fix/foo` before it creates
a worktree. An unresolved ref must create a human-owned configuration
blocker. Paperclip must not queue an agent-only retry when the adapter
never starts.

**Steps to reproduce**

1. Configure an execution workspace with a base ref that exists only on
the remote.
2. Start a run that creates a fresh worktree.
3. Repeat the run with the same unresolved ref.
4. Observe one configuration blocker and no repeated agent-only recovery
action.

**Paperclip version or commit**

`7664e323189bc219d8cbe00433b2e82b682b0504`

**Deployment mode**

Built from source with `pnpm dev`.

**Agent adapter(s) involved**

Not adapter-specific. The failure occurs before adapter dispatch.

**Database mode**

Not database-related.

**Access context**

Both board and agent execution paths can use execution workspaces.

Related public pull request: `Refs #11123`.

## What Changed

- Resolve remote-only base refs with the authenticated fetch helper
before `git worktree add`.
- Support both unqualified refs and remote-tracking refs.
- Raise a `configuration_incomplete` blocker when the requested ref
remains unresolved.
- Suppress missing-comment retries when setup fails before adapter
dispatch.
- Add the requested ref to the recovery fingerprint to bound identical
recovery actions.
- Add focused tests and update the execution semantics document.

## Verification

- `tsc --noEmit` passed for the changed server code.
- Focused Vitest suites passed, including four base-ref tests,
fingerprint deduplication, and pre-adapter retry suppression.
- GitHub Actions must run the full pull request gate.

## Risks

Low risk. The change affects workspace setup before adapter dispatch.
Existing worktree reuse remains unchanged. An unresolved ref now creates
a clear configuration blocker instead of starting an adapter run.

## Model Used

OpenAI GPT-5; exact model ID `gpt-5`; agentic tool use and repository
review.

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have searched GitHub for duplicate or related PRs and linked
them above
- [x] I have either (a) linked existing issues with `Fixes: #` / `Closes
#` / `Refs #` OR (b) described the issue in-PR following the relevant
issue template
- [x] I have not referenced internal/instance-local Paperclip issues or
links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip`
URLs)
- [x] My branch name describes the change (e.g. `docs/...`, `fix/...`)
and contains no internal Paperclip ticket id or instance-derived details
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [x] All Paperclip CI gates are green
- [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups
- [x] I will address all Greptile and reviewer comments before
requesting merge

---------

Co-authored-by: Paperclip <noreply@paperclip.ing>
2026-08-21 13:09:44 -07:00
Nicky LeachandPaperclip 0148c2c6eb test(server): cover buffered duplex chunk drain after a late listener bind (#11865)
## Thinking Path

> - Paperclip uses duplex routes to carry data from plugin workers.
> - PR #11860 added the product fix for buffered data after an early
route end.
> - The fix needs a regression test for a listener that binds after the
byte cap ends the route.
> - This pull request adds that test and protects the fix from later
regressions.
> - The benefit is clear test coverage for late-listener delivery.

## Linked Issues or Issue Description

This pull request adds regression coverage for the fix in [PR
#11860](https://github.com/paperclipai/paperclip/pull/11860).

The product fix already exists on `master`. Before that fix, a late
listener could receive no data after the byte cap ended the route. The
test sends two three-byte `€` chunks to a route with a four-byte cap,
waits for route end, then binds the listener. It expects the first valid
chunk.

## What Changed

- Add one server regression test for late-listener delivery after
byte-cap route termination.
- Keep the product code unchanged in this pull request.

## Verification

- The test passes on the current branch.
- PR #11860 merged the product fix into `master` at commit
`33eb68b3ae4ce7ee27b31c59bd41db600ad47d19`.
- GitHub CI passes on the current head.
- Greptile reports 5/5 with no blocking finding.

## Risks

Low risk. This pull request changes one test file and no product code,
schema, public API, or authentication flow.

## Model Used

OpenAI GPT-5. Runtime model ID: GPT-5. Context window: not exposed in
this run. Capabilities used: repository review, GitHub operations, and
tool use. The implementation came from the engineer's authorized test
commit.

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used with version and capability
details
- [x] I have checked ROADMAP.md and confirmed this pull request does not
duplicate planned core work
- [x] I have searched GitHub for duplicate or related pull requests and
linked them above
- [x] I have either linked an existing issue or described the issue in
this pull request
- [x] I have not referenced internal or instance-local Paperclip issues
or links
- [x] My branch name describes the change and contains no internal
Paperclip ticket id
- [x] I have run the relevant test and GitHub CI passes
- [x] I have added or updated tests where applicable
- [x] I have updated relevant documentation, or documentation does not
apply
- [x] I have considered and documented the risks above
- [x] All Paperclip CI gates are green
- [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups
- [x] I will address all Greptile and reviewer comments before
requesting merge

Co-authored-by: Paperclip <noreply@paperclip.ing>
2026-08-21 11:48:21 -07:00
Nicky LeachandPaperclip 5bc6031f79 fix(server,ui,claude-local): verify auth on the adapter Test lane and enforce managed-sandbox tenant binding (#11810)
## Thinking Path

> - Paperclip is the open source app people use to manage AI agents for
work
> - Adapter Test checks whether an agent adapter can run with its
configured environment, and every local-driver adapter (Claude, Codex,
Gemini, OpenCode, Pi, Cursor, etc.) shares this Test route and its UI
resolution logic
> - The Claude ACP Test lane could report pass without checking local or
remote authentication, and the shared Test route and UI had gaps in
environment binding, probe safety, and managed-sandbox resolution that
affect every adapter that uses the Test button, not only Claude
> - This pull request verifies authentication on every Claude ACP
target, and closes the shared Test-route/UI gaps: tenant-binding on the
route, a managed-sandbox-only redirect that matches the real run path,
and a three-tier environment resolution in the UI
> - The benefit is a truthful Test result with safer probe execution and
tenant isolation, for Claude specifically and for every other local
adapter that shares this Test surface

## Linked Issues or Issue Description

**What happened?**

The Claude ACP Test lane returned `status: "pass"` without checking
authentication for some local and non-sandbox targets. Separately, the
shared `/companies/:companyId/adapters/:type/test-environment` route —
used by every local-driver adapter, not only Claude — accepted a foreign
environment id, and its UI resolution did not mirror the server's
managed-sandbox-only redirect.

**Expected behavior**

The Test lane checks the resolved credential and hello probe for every
Claude ACP target. The shared adapter Test route rejects a foreign
environment before it reveals environment details or starts a lease, for
any adapter type. The Test's environment resolution (UI and server)
matches the real run's three-tier resolution, including the
managed-sandbox-only redirect.

**Steps to reproduce**

1. Run the Claude ACP Test lane against a local target without a valid
credential.
2. Run the adapter Test route with an environment id from another
company (any adapter type).
3. Observe the pass result on step 1, or the missing tenant-binding
rejection on step 2.

**Paperclip version or commit**

`933749e01f74e82ce5d315c071be534d04e01158`

**Deployment mode**

Local dev (`pnpm dev`) and server route tests.

**Agent adapter(s) involved**

Claude Code directly (the ACP auth-verification work). The
tenant-binding guard, managed-sandbox-only redirect, and UI three-tier
resolution apply to the shared adapter Test route and affect every
local-driver adapter (Codex, Gemini, OpenCode, Pi, Cursor, etc.), not
only Claude — see "What Changed" below for the split between Claude-only
and shared changes.

**Database mode**

Not database-related.

**Access context**

Both board and agent paths use the affected Test surface, for every
local-driver adapter.

**Additional context**

Two commits that were previously bundled into this PR — a
`plugin-worker-manager` duplex-channel frame-bound fix and a
`workspace-runtime` exit-persist crash fix — are unrelated to the
adapter Test lane and have been split out into their own PRs: #11860 and
#11861.

## What Changed

Claude-only (`packages/adapters/claude-local`):

- Verify `CLAUDE_CODE_OAUTH_TOKEN` and run the hello probe for every
Claude ACP target.
- Keep `adapter_auth_missing` sandbox-only and report missing
non-sandbox credentials as a warning.
- Add a deny-by-default probe environment builder for the ACP and CLI
local probes.
- Log only fixed probe context and allowlisted classifications.
- Seed the host OAuth token into the hello probe environment.

Shared, cross-adapter (`server/src/routes/agents.ts`,
`ui/src/lib/adapter-test-environment.ts`,
`ui/src/components/AgentConfigForm.tsx`,
`ui/src/components/OnboardingWizard.tsx`):

- Add a company-binding guard and a binding assertion for the generic
`/companies/:companyId/adapters/:type/test-environment` route, so a
foreign-company environment id is rejected before any secret resolution
or sandbox lease, for every adapter type.
- Resolve all three server environment tiers (agent default, instance
default, local default) in the UI, and add the managed-sandbox-only
redirect so the Test probes the same target a real run would use.
- Enforce onboarding Test results: block hire on a failed environment
test.

- Add regression tests for authentication, tenant binding, probe safety,
diagnostics, and UI resolution.

## Verification

- Adapter suites pass for the Claude local server probe, remote, ACP,
auth, probe environment, and config paths.
- Server route tests pass, including the five tenant-binding cases.
- UI adapter Test environment resolver tests pass for all three
resolution tiers.
- Adapter package `tsc --noEmit` exits 0.
- Full CI must pass on this pull request.

## Risks

The probe environment now denies caller variables by default. A required
variable that is not on the allowlist could stop a probe from starting.
The route now rejects foreign environment ids with a fixed 403 response.
The managed-sandbox-only redirect changes where the Test (and the login
affordance) probes for every local-driver adapter under that policy, not
only Claude — operators running other local adapters under
managed-sandbox-only will see their Test target move from local to the
managed sandbox, matching what real runs already do. The change limits
secret and diagnostic exposure.

## Model Used

Original implementation: OpenAI Codex, GPT-5; exact context window not
exposed in that run; tool use and code execution.

This revision (commit split and title/description correction): Claude,
Sonnet 5 (claude-sonnet-5). The original title and description described
this PR as Claude-only; review found it also changes the shared adapter
Test route and UI resolution used by every local-driver adapter, and
carried two unrelated server fixes. Claude split those two commits into
#11860 and #11861 via `git rebase --onto` (verified byte-identical to
the original tree minus those commits) and rewrote this description to
reflect the actual scope. No functional code in this PR was authored by
Claude.

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have searched GitHub for duplicate or related PRs and linked
them above
- [x] I have either (a) linked existing issues with `Fixes: #` / `Closes
#` / `Refs #` OR (b) described the issue in-PR following the relevant
issue template
- [x] I have not referenced internal/instance-local Paperclip issues or
links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip`
URLs)
- [x] My branch name describes the change (e.g. `docs/...`, `fix/...`)
and contains no internal Paperclip ticket id or instance-derived details
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [x] All Paperclip CI gates are green
- [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups
- [x] I will address all Greptile and reviewer comments before
requesting merge

---------

Co-authored-by: Paperclip <noreply@paperclip.ing>
2026-08-21 11:30:49 -07:00
Nicky LeachandPaperclip 1746783d40 fix(kimi): align package with Node 24 policy (#11890)
## Thinking Path

> - Paperclip is the open source app people use to manage AI agents for
work
> - Paperclip now requires Node.js 24.11.0 or later
> - Each workspace package must publish the same Node.js engine
requirement
> - The Kimi adapter entered `master` after the Node.js upgrade branch
started
> - Its package still used Node.js 22 types and had no engine
requirement
> - This pull request aligns the Kimi adapter with the repository
Node.js policy
> - The benefit is that the Node.js policy check passes again on
`master`

## Linked Issues or Issue Description

**What happened?**

The `pnpm check:node-version` command fails on `master`. The Kimi
adapter uses `@types/node` 22 and has no `engines.node` value.

**Expected behavior**

All workspace packages must use Node.js 24 types and declare Node.js
24.11.0 as the minimum version.

**Steps to reproduce**

1. Check out commit `a7e689b3c`.
2. Use Node.js 24.11.0.
3. Run `pnpm check:node-version`.

**Paperclip version or commit**

`a7e689b3c`

**Deployment mode**

Local dev (`pnpm dev`).

## What Changed

- Update the Kimi adapter to use `@types/node` 24.
- Add the repository minimum Node.js engine requirement to the Kimi
adapter package.
- Keep `pnpm-lock.yaml` out of this pull request.

## Verification

- `npx -y -p node@24.11.0 -c 'node --version && pnpm check:node-version
&& pnpm --filter @paperclipai/adapter-kimi-local typecheck'`
- The command reports Node.js `v24.11.0`.
- The Node.js policy check passes.
- The Kimi adapter typecheck passes.
- A broader local suite was started and stopped at the maintainer's
request after the focused checks passed.

## Risks

- Low risk. This change updates package metadata and development types
only.
- The lockfile refresh runs in separate repository automation.

> For core feature work, check [`ROADMAP.md`](ROADMAP.md) first and
discuss it in `#dev` before opening the PR. Feature PRs that overlap
with planned core work may need to be redirected — check the roadmap
first. See `CONTRIBUTING.md`.

## Model Used

- OpenAI Codex, GPT-5, with repository inspection, shell tools, and code
execution.

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have searched GitHub for duplicate or related PRs and linked
them above
- [x] I have either (a) linked existing issues with `Fixes: #` / `Closes
#` / `Refs #` OR (b) described the issue in-PR following the relevant
issue template
- [x] I have not referenced internal/instance-local Paperclip issues or
links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip`
URLs)
- [x] My branch name describes the change (e.g. `docs/...`, `fix/...`)
and contains no internal Paperclip ticket id or instance-derived details
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [x] All Paperclip CI gates are green
- [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups
- [x] I will address all Greptile and reviewer comments before
requesting merge

Co-authored-by: Paperclip <noreply@paperclip.ing>
2026-08-21 10:55:58 -07:00
Nicky LeachandPaperclip 38d8f37172 fix(build): enforce Node 24 across Paperclip (#11792)
## Thinking Path

> - Paperclip is the open source app people use to manage AI agents for
work.
> - Paperclip runs across the CLI, server, adapters, plugins, CI, and
container images.
> - These surfaces declared different Node.js versions from 20 through
24.
> - A newer `@types/node` major can expose APIs that the supported
runtime does not provide.
> - Node.js 20 is no longer a suitable project baseline, and Node.js 24
is the current LTS line.
> - This pull request sets Node.js 24.11.0 as one repository-wide
baseline, adds a drift check, and gives users actionable startup
guidance when their runtime is too old.
> - The benefit is one clear runtime contract for development, release,
installation, and published packages.

## Linked Issues or Issue Description

Refs #2734

Refs #11727

Refs #739

## What Changed

- Require Node.js 24.11.0 or newer in all 42 package manifests and
runtime checks.
- Use Node.js 24 in GitHub Actions, Docker images, smoke images, sandbox
setup, portable installs, and esbuild targets.
- Align every direct `@types/node` declaration on `^24.0.0`.
- Prevent Dependabot from opening major `@types/node` upgrades without a
matching runtime decision.
- Add `.nvmrc` and a CI policy check for Node version drift.
- Update ACP version gates, tests, and user documentation for the new
minimum.
- Print a non-blocking warning on CLI and server startup when Node is
unsupported, with remediation through a version manager or the
documented downloaded `install.sh` workflow.
- Deduplicate that warning when `paperclipai run` boots the CLI and
server in the same process.

## Verification

- `node scripts/check-node-version-policy.mjs`
- `node --check scripts/check-node-version-policy.mjs`
- `node --check cli/esbuild.config.mjs`
- `node --check scripts/generate-npm-package-json.mjs`
- `bash -n scripts/install.sh scripts/test-install-sh-docker.sh
scripts/e2e-install-lifecycle.sh`
- Parsed all 42 package manifests and confirmed `engines.node` is
`>=24.11.0`.
- `git diff --check`
- `vitest run
packages/adapter-utils/src/sandbox-install-command.test.ts` passed with
3 tests.
- `vitest run cli/src/node-version.test.ts` passed with 4 tests.
- Directly exercised the shared warning helper for unsupported-version
messaging and same-process deduplication.
- The focused exe.dev suite could not resolve the locally unbuilt plugin
SDK from this isolated worktree. A full offline workspace install was
also blocked because the package-manager signature verifier requires
registry access. The full suite was not run locally; draft CI performs a
clean install and evaluates the wider impact.

## Risks

- This is a breaking runtime change for users, plugins, and deployments
that still use Node.js 20 or 22.
- Published workspace packages will now produce an engine warning or
failure in strict package managers on older Node.js releases.
- Node.js 24 can reveal dependency, native module, Playwright, or agent
CLI compatibility issues in CI.
- The bootstrap installer now installs Node.js 24 when the current
runtime is older than 24.11.0.
- The portable sandbox fallback is pinned to Node.js 24.11.0 and depends
on that upstream tarball remaining available.
- Unsupported runtimes continue booting after a warning, so a later
incompatibility can still fail at its point of use.
- The CLI and server share the warning policy through the published
`@paperclipai/shared` package; packaging checks must keep that subpath
export available.
- This PR does not commit `pnpm-lock.yaml` because repository policy
assigns lockfile generation to CI.

> For core feature work, check [`ROADMAP.md`](ROADMAP.md) first and
discuss it in `#dev` before opening the PR. Feature PRs that overlap
with planned core work may need to be redirected — check the roadmap
first. See `CONTRIBUTING.md`.

## Model Used

- OpenAI Codex based on GPT-5. The exact deployment ID and context
window are not exposed in this session. Reasoning, repository tools,
shell execution, and GitHub tools were enabled.

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have searched GitHub for duplicate or related PRs and linked
them above
- [x] I have either (a) linked existing issues with `Fixes: #` / `Closes
#` / `Refs #` OR (b) described the issue in-PR following the relevant
issue template
- [x] I have not referenced internal/instance-local Paperclip issues or
links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip`
URLs)
- [x] My branch name describes the change (e.g. `docs/...`, `fix/...`)
and contains no internal Paperclip ticket id or instance-derived details
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [x] All Paperclip CI gates are green
- [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups
- [x] I will address all Greptile and reviewer comments before
requesting merge

---------

Co-authored-by: Paperclip <noreply@paperclip.ing>
2026-08-21 10:17:52 -07:00
Nicky LeachandPaperclip 33eb68b3ae fix(server): end the duplex route on the pre-bind bounds when frames arrive before the bind (#11860)
## Thinking Path

> - Paperclip is the open source app people use to manage AI agents for
work
> - The host and a plugin worker talk over a duplex channel route with
bounds on buffered frames and total bytes
> - A worker can batch its data and exit frames with the open reply, so
those frames arrive before the route binds and before a listener
attaches
> - Two of the route bounds did not hold on that pre-bind path: a shared
limit let the pre-open hold swallow an over-limit frame before the
buffered-frame bound could end the route, and the route end discarded
chunks a later listener still needed
> - This pull request gives the pre-open hold its own ceiling above the
buffered bound, and keeps the buffered chunks across a route end
> - The benefit is a duplex route that enforces its bounds and preserves
valid data, even when a worker batches frames ahead of the bind

## Linked Issues or Issue Description

No existing GitHub issue covers this. Filing it directly here, following
the bug report template.

**What happened?**

Two duplex channel route bounds in
`server/src/services/plugin-worker-manager.ts` did not hold when the
data and exit frames arrived in the open-reply read batch, before the
route bound:

- The pre-open hold and the pre-bind buffered-frame bound shared one
limit. When a caller lowered the buffered bound, the hold dropped the
overflow frame as a protocol error before the buffered bound could end
the route, so the route never ended.
- The route end discarded the buffered chunks. A frame can end the route
during the replay, before a listener attaches, and the chunks the host
accepted before that frame are valid data.

**Expected behavior**

The pre-open hold uses its own ceiling, above the buffered bound, so the
replay after the bind lets the buffered bound end the route. A route end
keeps the buffered chunks so a listener that attaches after the end
still drains them.

**Steps to reproduce**

1. Open a duplex channel where the worker batches several data frames
with the open reply.
2. Lower `maxPreBindBufferedFrames` below the batch size.
3. Observe the route fails to end on the buffered-frame bound, or a
listener that attaches after an end-during-replay never receives the
chunks buffered before that end.

**Paperclip version or commit**

`933749e01f74e82ce5d315c071be534d04e01158`

**Deployment mode**

Local dev (`pnpm dev`) and server unit tests.

**Agent adapter(s) involved**

None — this is host/plugin-worker transport infrastructure, not
adapter-specific.

**Database mode**

Not database-related.

**Access context**

Any board or agent path that runs a plugin worker over a duplex channel
route.

## What Changed

- Give the pre-open frame hold its own ceiling
(`MAX_DUPLEX_CHANNEL_PRE_OPEN_HOLD_FRAMES`), separate from the pre-bind
buffered-frame bound, so lowering the buffered bound still ends the
route instead of being pre-empted by the hold.
- Keep the buffered chunks on a route end instead of discarding them, so
a listener that attaches after an end-during-replay still drains the
data the host already accepted.
- Add two regression tests that batch frames with the open reply, so
both bounds run through the pre-bind path deterministically.

## Verification

- `cd server && npx vitest run
src/__tests__/plugin-worker-manager-duplex.test.ts` — 24/24 tests pass,
including the two new regression cases.

## Risks

Low risk. This only changes bound bookkeeping on an internal transport
path (frame hold ceiling and end-time buffer retention); it does not
change the wire protocol or any public API. The new ceiling is a
constant above the existing buffered bound, so pre-open holds are still
capped.

## Model Used

Claude, Sonnet 5 (claude-sonnet-5); assisted with repository-grounded
diff review and drafted this PR description from the commit and code
history. No functional code in this PR was authored by Claude — the fix
itself is Priya Raman's, preserved with original authorship intact.

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have searched GitHub for duplicate or related PRs and linked
them above
- [x] I have either (a) linked existing issues with `Fixes: #` / `Closes
#` / `Refs #` OR (b) described the issue in-PR following the relevant
issue template
- [x] I have not referenced internal/instance-local Paperclip issues or
links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip`
URLs)
- [x] My branch name describes the change (e.g. `docs/...`, `fix/...`)
and contains no internal Paperclip ticket id or instance-derived details
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [x] All Paperclip CI gates are green
- [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups
- [x] I will address all Greptile and reviewer comments before
requesting merge

---------

Co-authored-by: Paperclip <noreply@paperclip.ing>
2026-08-21 10:09:30 -07:00
Nicky LeachandPaperclip 9af1e75629 fix(server): handle the runtime service exit persist when a parent row is gone (#11861)
## Thinking Path

> - Paperclip is the open source app people use to manage AI agents for
work
> - A runtime service (e.g. a dev server an agent started) runs as a
child process tracked against a project row
> - When that child exits on its own, the host records its terminal
status in the database as a detached, best-effort persist
> - A caller can delete the project (or company) while the child still
runs, so the `project_id` foreign key rejects that persist, and the
detached write had no error handler, turning the rejection into an
unhandled crash
> - This pull request wraps the exit-time persist in a try/catch and
logs the failure instead of crashing the host
> - The benefit is a host that survives a project deleted out from under
a still-running runtime service, instead of taking down the whole
process on an unrelated cleanup

## Linked Issues or Issue Description

No existing GitHub issue covers this. Filing it directly here, following
the bug report template.

**What happened?**

`registerRuntimeService`'s child `exit` handler in
`server/src/services/workspace-runtime.ts` runs a detached, unawaited
persist of the terminal service status. If the parent project row was
deleted while the service was still running, the `project_id` foreign
key rejects the write. The detached persist had no error handler, so the
rejection surfaced as an unhandled promise rejection and could crash the
host.

**Expected behavior**

The exit-time persist is best effort: every error inside it is caught
and logged, so a foreign-key rejection (or any other persist failure)
never crashes the host.

**Steps to reproduce**

1. Start a runtime service tied to a project.
2. Delete the project (or company) while the service is still running.
3. Let the child process exit on its own.
4. Observe the detached persist throws an unhandled foreign-key error.

**Paperclip version or commit**

`933749e01f74e82ce5d315c071be534d04e01158`

**Deployment mode**

Local dev (`pnpm dev`) and server unit tests (embedded Postgres).

**Agent adapter(s) involved**

None — this is runtime-service lifecycle infrastructure, not
adapter-specific.

**Database mode**

Embedded/managed Postgres — the fix concerns the `project_id` foreign
key on the runtime-service table.

**Access context**

Any board or agent path that starts a runtime service (e.g. a dev
server) tied to a project that can later be deleted.

## What Changed

- Wrap the exit-handler's `cleanupRecordExposure` /
`removeLocalServiceRegistryRecord` / `persistRuntimeServiceRecord`
sequence in a try/catch; log a warning on failure instead of letting the
rejection escape.
- Terminate real child processes in the embedded-postgres test teardown
before the row deletes, so a left-over child does not exit later and
write a row that references an already-deleted project.

## Verification

- `cd server && npx vitest run src/__tests__/workspace-runtime.test.ts`
covers the new exit-persist-after-parent-delete regression case. This
suite spins up embedded Postgres and did not finish inside this review's
local time budget, so I did not confirm a local pass — deferring to CI,
which runs it as part of the normal server test job.

## Risks

Low risk. The change only adds error handling around an existing
best-effort, detached persist — it does not change the happy-path
behavior or the persisted schema. A persist failure is now logged
instead of crashing the host, which is strictly safer.

## Model Used

Claude, Sonnet 5 (claude-sonnet-5); assisted with repository-grounded
diff review and drafted this PR description from the commit and code
history. No functional code in this PR was authored by Claude — the fix
itself is Priya Raman's, preserved with original authorship intact.

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have searched GitHub for duplicate or related PRs and linked
them above
- [x] I have either (a) linked existing issues with `Fixes: #` / `Closes
#` / `Refs #` OR (b) described the issue in-PR following the relevant
issue template
- [x] I have not referenced internal/instance-local Paperclip issues or
links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip`
URLs)
- [x] My branch name describes the change (e.g. `docs/...`, `fix/...`)
and contains no internal Paperclip ticket id or instance-derived details
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [x] All Paperclip CI gates are green
- [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups
- [x] I will address all Greptile and reviewer comments before
requesting merge

Co-authored-by: Paperclip <noreply@paperclip.ing>
2026-08-21 09:02:36 -07:00
Nicky LeachandPaperclip b83e14ad2c fix(runtime): stop the readiness probe from stealing the guest exposure port (#11788)
## Thinking Path

> - Paperclip is the open source app people use to manage AI agents for
work.
> - The workspace runtime starts guest processes and exposes their
ports.
> - The readiness wait bound the guest port to test whether it was
ready.
> - That bind could take the port before the guest process used it.
> - This pull request reads listener state without a competing bind and
recovers from a real port collision.
> - The benefit is stable runtime exposure and a clear recovery path for
a genuine collision.

## Linked Issues or Issue Description

**What happened?**

The managed HTTPS exposure test failed intermittently with `listen
EADDRINUSE` on `127.0.0.1:42000`. The readiness wait bound the guest
port before the guest process could bind it.

**Expected behavior**

The readiness wait must not hold the guest port. The runtime must
recover when an external process owns the assigned port.

**Steps to reproduce**

1. Run `npx vitest run
server/src/services/workspace-runtime-exposure.test.ts` from the
repository root.
2. Inject a delayed guest bind and a widened readiness-probe hold.
3. Observe the port collision before this fix and the successful retry
after this fix.

**Paperclip version or commit**

`b375bbd913cb2edc8e077f4339ce0745e53bd462`

**Deployment mode**

Built from source with the server test suite.

**Installation method**

Built from source with pnpm.

**Agent adapter(s) involved**

Not adapter-specific. This is a core runtime test.

**Database mode**

Not database-related.

**Relevant logs or output**

Before this fix, the test reported `listen EADDRINUSE: address already
in use 127.0.0.1:42000`.

## What Changed

- Read listener presence from `/proc` on Linux instead of binding the
guest port.
- Keep the bind probe as the fallback on non-Linux hosts.
- Capture the current port owner when an exposed guest exits with
`EADDRINUSE`.
- Quarantine the app and HMR pair, then allocate the next free port pair
within the existing range.
- Add a deterministic regression test for quarantine, re-allocation, and
self-diagnosis logging.

## Verification

- Run `npx vitest run
server/src/services/workspace-runtime-exposure.test.ts` from the
repository root.
- The target suite passes 19 tests locally.
- The related runtime suites pass 105, 128, and 21 tests locally.
- Run `tsc -p server/tsconfig.json` to check the changed server files.
- CI must pass the general server shard and all required checks.
- Greptile must report 5/5 with no open P2 comments, recommendations, or
follow-ups.

## Risks

The Linux readiness path now depends on `/proc` listener data. Non-Linux
hosts retain the existing bind-probe fallback. The port range and
allocation limit do not change.

## Model Used

OpenAI GPT-5. This agent used tool calls for repository checks and
GitHub PR management. Priya Raman authored the code change.

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have searched GitHub for duplicate or related PRs and linked
them above
- [x] I have either (a) linked existing issues with `Fixes: #` /
`Closes: #` / `Refs: #` OR (b) described the issue in-PR following the
relevant issue template
- [x] I have not referenced internal/instance-local Paperclip issues or
links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip`
URLs)
- [x] My branch name describes the change (e.g. `docs/...`, `fix/...`)
and contains no internal Paperclip ticket id or instance-derived details
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [x] All Paperclip CI gates are green
- [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups
- [x] I will address all Greptile and reviewer comments before
requesting merge

---------

Co-authored-by: Paperclip <noreply@paperclip.ing>
2026-08-20 12:05:35 -07:00
Nicky LeachandClaude Opus 5 a9d1f740f0 fix(workspaces): seed managed worktrees when the base checkout has no config (#11752)
## Thinking Path

> - Paperclip is the open source app people use to manage AI agents for
work
> - Agents do that work in isolated git worktrees, and a managed
worktree runs its own Paperclip instance with a cloned database
> - That clone needs a seed source, and the source must come from
server-owned registration, never from state the workspace itself can
rewrite
> - The seed-source resolver requires the registered base project
workspace to hold its own `.paperclip/config.json`
> - A managed project workspace is a plain `git clone`, and no code
writes that file into it
> - Every isolated worktree provision, deferred seed, and workspace
repair therefore fails on a managed checkout
> - This pull request lets a named source supply the config when the
base checkout has none
> - The benefit is that managed worktrees provision again, and the seed
source stays server-owned

## Linked Issues or Issue Description

No public GitHub issue exists for this problem. It is described below.

**What happened?**

Agent runs that need an isolated worktree fail during provisioning. The
provision command exits with this error (paths redacted):

```
Execution workspace provision command "bash ./scripts/provision-worktree.sh" failed:
Registered base project workspace has no canonical Paperclip config:
<instance-home>/instances/default/projects/<company-id>/<project-id>/<repo>/.paperclip/config.json
```

`resolveRegisteredWorktreeSeedSource` sets `registeredConfigPath` to
`<baseCwd>/.paperclip/config.json` whenever the caller names a
registered base workspace. It then requires that file to exist.
`scripts/provision-worktree.sh` applies the same rule.

A managed project workspace never has that file.
`materializeManagedProjectWorkspace` creates it with `git clone` and a
rename, so the checkout holds repository content only. The control plane
keeps its config at `<home>/instances/<id>/config.json` instead.

The failure reaches three paths: worktree provisioning, deferred seeding
through `worktree ensure-seeded`, and workspace repair.

The behavior changed in #11671. That pull request replaced a fallback
chain with a single hard requirement. Fixture code in
`scripts/__tests__/provision-worktree-self-heal.test.mjs` writes a
config into the fake base workspace, so tests kept passing.

**Expected behavior**

A managed worktree provisions and seeds from the registered source. The
seed manifest still never selects that source.

**Steps to reproduce**

1. Register the Paperclip repository as a project with a `repoUrl`, so
the server materializes a managed checkout.
2. Assign an issue to an agent whose workspace strategy is
`git_worktree`.
3. Watch the workspace operation log for the provision command.
4. The command exits non-zero with the error above.

**Paperclip version or commit**

Reproduced on `master` at 01ddc26a3.

**Deployment mode**

`local_trusted`, single instance.

**Database mode**

Embedded PostgreSQL.

**Operating system**

Linux, Node.js 22.

**Related pull requests**

- Refs #11671 — introduced the requirement this pull request relaxes.
- Refs #11733 — open work on seed-source preflight. It reads the same
base-workspace config path and skips when the file is absent. It does
not change source selection.
- Refs #11735 — open work on provisioning reliability. It edits the same
four files and will need a rebase after either lands.

## What Changed

- `resolveRegisteredWorktreeSeedSource` sets the registered config path
only when `<baseCwd>/.paperclip/config.json` exists. This makes the
existing `registeredConfigPath ?? explicitSource` branch reachable for a
plain checkout.
- A base workspace that does hold its own config stays authoritative. A
mismatched explicit source is still rejected.
- The resolver throws a named error when the base workspace has no
config and no source is named.
- `readInstanceId` accepts an instance-root config at
`<home>/instances/<id>/config.json`. That layout names its instance by
directory and has no adjacent `.env`. Validation reuses
`resolvePaperclipInstanceId`.
- `scripts/provision-worktree.sh` and
`scripts/provision-worktree-runtime.sh` name the control plane's
instance config as the source when the base workspace has none. The
canonical-path and symlink checks stay.
- The workspace repair route supplies the same fallback, and only when
the base workspace has no config of its own.
- `doc/DEVELOPING.md` records the two source layouts.

## Verification

- `node --test scripts/__tests__/provision-worktree-self-heal.test.mjs`
— 10 tests pass. The fixture no longer writes a config into the base
workspace, so it models a real managed checkout. One test now creates
that config mid-test, which covers both layouts.
- `npx vitest run src/worktree-seed-source.test.ts` in `packages/shared`
— 4 tests pass. Two are new: one resolves an instance-root source, and
one still fails closed when no source exists.
- `npx vitest run src/__tests__/workspace-runtime.test.ts
src/__tests__/execution-workspaces-routes.test.ts
src/__tests__/execution-workspace-runtime-control-conflict.test.ts
src/__tests__/workspace-operations-reconciliation.test.ts
src/__tests__/worktree-seed-server-spawn.test.ts` in `server` — all
pass. Run them one file at a time. They share one test database, and
concurrent runs fail teardown.
- `npx vitest run src/__tests__/worktree.test.ts` in `cli` — 63 tests
pass.
- `pnpm --filter @paperclipai/shared typecheck` — clean.
- Manual check on a live instance: the resolver now returns the instance
config as the source for a managed checkout, with the source instance
`default` and a distinct target instance.

## Risks

Low to moderate.

- The relaxed rule applies only when the base workspace holds no config.
A base workspace that holds one keeps full authority, so the trust model
from #11671 is unchanged. The seed manifest still never selects the
source.
- The instance-id fallback reads a directory name. It applies only to
the `<home>/instances/<id>/config.json` layout, and
`resolvePaperclipInstanceId` rejects an unsafe segment.
- #11735 edits the same four files. Whichever pull request lands second
needs a rebase.
- `pnpm --filter @paperclipai/server typecheck` currently fails on this
checkout with duplicate `drizzle-orm` type instantiations. The failure
is present with and without this change, and the error count is
identical. It comes from an unrelated lockfile state, not from this pull
request.

## Model Used

Claude Opus 5 (`claude-opus-5`), by Anthropic, running in Claude Code.
Extended thinking was on. The model used file, search, and shell tools
to diagnose the failure on a live instance and to run the test suites.

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have searched GitHub for duplicate or related PRs and linked
them above
- [x] I have either (a) linked existing issues with `Fixes: #` / `Closes
#` / `Refs #` OR (b) described the issue in-PR following the relevant
issue template
- [x] I have not referenced internal/instance-local Paperclip issues or
links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip`
URLs)
- [x] My branch name describes the change (e.g. `docs/...`, `fix/...`)
and contains no internal Paperclip ticket id or instance-derived details
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [ ] All Paperclip CI gates are green
- [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups
- [x] I will address all Greptile and reviewer comments before
requesting merge

🤖 Generated with [Claude Code](https://claude.com/claude-code)

---------

Co-authored-by: Claude Opus 5 <noreply@anthropic.com>
2026-08-20 08:42:16 -07:00
Nicky LeachandPaperclip 5a1ce7aed8 fix(server): stamp built commit into service.version (#11748)
## Thinking Path

> - Paperclip is the open source app people use to manage AI agents for
work
> - The server emits OpenTelemetry spans so operators can trace agent
work
> - Each span needs a service version that identifies the code that
produced it
> - The current service version comes from a static environment value
and can become stale after a rebuild
> - This pull request records the built commit and resolves the service
version from the build stamp, runtime Git, the environment, or an
unknown fallback
> - The benefit is trace data that identifies the correct built commit
during development and deployment

## Linked Issues or Issue Description

**What happened?**

The server used a static `OTEL_SERVICE_VERSION` value for every
OpenTelemetry span. Rebuilds could produce traces with an old commit
value.

**Expected behavior**

The server should report the built commit when a build stamp exists. It
should use runtime Git, the environment value, or `unknown` as fallback.

**Steps to reproduce**

1. Set `OTEL_SERVICE_VERSION` to an old commit value.
2. Build the server at a different commit.
3. Start the server and inspect the OpenTelemetry service version.
4. Confirm that the built commit takes precedence over the old
environment value.

## What Changed

- Add a build script that writes the short Git commit to
`dist/build-info.json`.
- Resolve `service.version` from the build stamp, runtime Git, the
environment, or `unknown`.
- Log the resolved service version once during server startup.
- Add tests for the resolution order and safe behavior without Git.
- Document the resolution order in `doc/observability.md`.

## Verification

- `pnpm --filter @paperclipai/server build`
- `npx vitest run server/src/__tests__/service-version.test.ts`
- `pnpm --filter @paperclipai/server typecheck`
- Confirm that the build stamp contains the short commit.
- Confirm that the stamp wins over the environment value.
- Confirm that a build without Git exits successfully without a stamp.

## Risks

The server now prefers the built commit over `OTEL_SERVICE_VERSION`. A
build without Git uses the existing environment value or `unknown`. The
change needs no schema migration and has a single-commit rollback path.

## Model Used

OpenAI Codex, GPT-5, tool use and code execution. The runtime does not
expose the context window size or reasoning mode.

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have searched GitHub for duplicate or related PRs and linked
them above
- [x] I have either (a) linked existing issues with `Fixes: #` / `Closes
#` / `Refs #` OR (b) described the issue in-PR following the relevant
issue template
- [x] I have not referenced internal/instance-local Paperclip issues or
links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip`
URLs)
- [x] My branch name describes the change (e.g. `docs/...`, `fix/...`)
and contains no internal Paperclip ticket id or instance-derived details
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [x] All Paperclip CI gates are green
- [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups
- [x] I will address all Greptile and reviewer comments before
requesting merge

---------

Co-authored-by: Paperclip <noreply@paperclip.ing>
2026-08-19 21:20:40 -07:00
Nicky LeachandPaperclip 7c8064da1b test(runtime): assert order-independent port invariants for concurrent siblings (#11754)
## Thinking Path

> - Paperclip manages work for AI agents.
> - The workspace runtime starts isolated services for concurrent
workspaces.
> - A runtime test assumed that one concurrent lane always received the
base port.
> - The allocator guarantees distinct ports, but scheduling decides
which lane receives the base port.
> - This pull request changes the test to assert allocator guarantees
without lane-order assumptions.
> - The benefit is a stable test that still checks the complete bounded
port range.

## Linked Issues or Issue Description

**What happened?**

The concurrent sibling workspace runtime test failed intermittently
because it assumed array index 0 received the base port.

**Expected behavior**

The test must accept either lane as the base-port owner while it checks
the allocator invariants.

**Steps to reproduce**

1. Start two isolated workspace runtimes with `Promise.all`.
2. Force the second lane to start first.
3. Run the old assertions.
4. Observe that the test expects the wrong lane to receive the base
port.

**Paperclip version or commit**

This change targets the current `master` branch.

**Deployment mode**

Built from source test suite.

**Installation method**

Built from source with pnpm.

**Database mode**

Not database-related.

## What Changed

- Replace lane-order assertions with order-independent port invariants.
- Assert distinct ports, the base lower port, and the bounded upper
port.
- Keep concurrent startup, service URL checks, and persisted-row checks.

## Verification

- The target test passed 12 consecutive runs.
- The full test file passed 128 of 128 tests.
- Both forced lane orderings passed with the new invariants.
- TypeScript reported no errors in the changed file.
- CI will run after this pull request opens.

## Risks

Low risk. This pull request changes one test file and does not change
runtime code.

## Model Used

OpenAI Codex, GPT-5, tool use and code execution enabled. The model
reviewed and prepared the pull request metadata.

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have searched GitHub for duplicate or related PRs and linked
them above
- [x] I have either (a) linked existing issues with `Fixes: #` /
`Closes: #` / `Refs: #` OR (b) described the issue in-PR following the
relevant issue template
- [x] I have not referenced internal/instance-local Paperclip issues or
links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip`
URLs)
- [x] My branch name describes the change (e.g. `docs/...`, `fix/...`)
and contains no internal Paperclip ticket id or instance-derived details
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [x] All Paperclip CI gates are green
- [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups
- [x] I will address all Greptile and reviewer comments before
requesting merge

---------

Co-authored-by: Paperclip <noreply@paperclip.ing>
2026-08-19 19:59:40 -07:00
Nicky LeachandPaperclip faab2620ad feat(sandbox): add a duplex transport for Daytona behind a default-off kill switch (#11750)
## Thinking Path

> - Paperclip is an open source app that manages AI agents for work
> - Paperclip runs agents in local and remote sandbox environments
> - A sandbox needs a bounded channel for commands and asynchronous
input
> - Daytona needs a real pseudo-terminal transport for this channel
> - The sandbox gateway also needs a mode that handles channel loss
safely
> - This pull request adds the Daytona transport and gateway mode behind
a default-off kill switch
> - The benefit is a tested foundation for later transport selection

## Linked Issues or Issue Description

**Subsystem affected**

Cross-cutting (multiple of the above): sandbox providers, plugin SDK,
server settings, and shared types.

**Problem or motivation**

The merged sandbox protocol has no runtime transport for Daytona. The
generated sandbox gateway also has no duplex mode. A later
transport-selection change needs both parts and a safe per-run gate.

**Proposed solution**

Add a Daytona `duplexCommandStream` transport over a raw
pseudo-terminal. Add a generated gateway mode named `duplex_v1`. Add the
`enableSandboxDuplexBridge` setting with a default value of `false`.
Keep transport selection disabled until a later pull request.

**Alternatives considered**

Keep the protocol unused until the transport-selection change. This
would delay provider tests and leave the gateway path without direct
coverage.

**Roadmap alignment**

This change supports the completed Roadmap item for cloud and sandbox
agents. It extends the merged sandbox channel foundation in pull request
#11738.

**Additional context**

The Daytona provider remains an untrusted boundary. Deployments must use
least-privilege provider credentials and provider-side quota controls.
Operators must name an owner for duplex telemetry retention before
rollout.

## What Changed

- Add the Daytona `duplexCommandStream` capability over a raw
pseudo-terminal.
- Add a launch wrapper that disables echo and newline translation for
NDJSON frames.
- Close channels on lease release, destroy, resume of a stopped worker,
and worker shutdown.
- Declare the capability in the Daytona manifest and set
`PLUGIN_VERSION` to `0.1.5`.
- Add the worker-to-host notification sink at `ctx.duplexChannel.data`
and `ctx.duplexChannel.exit`.
- Add the generated sandbox gateway mode
`PAPERCLIP_API_BRIDGE_MODE=duplex_v1`.
- Add channel-loss results of `409 outcome_indeterminate` and `503
bridge_unavailable`.
- Add the per-run setting `enableSandboxDuplexBridge`, with a default
value of `false`.
- Add unit tests, generated-source codec tests, lifecycle tests, and a
credential-gated live Daytona test.

## Verification

- Daytona suite: 185 tests pass.
- Adapter utilities: 754 tests pass and 4 tests skip.
- Plugin SDK: 62 tests pass.
- Shared package: 28 tests pass.
- Server duplex tests pass.
- Shared, plugin SDK, server, and Daytona TypeScript checks pass.
- The live Daytona test passes 3 cases when `DAYTONA_API_KEY` is set.
- The live Daytona test skips 3 cases without `DAYTONA_API_KEY`.
- CI must run the full workspace typecheck, test, and build gates after
PR creation.

## Risks

- The Daytona control plane and pseudo-terminal remain untrusted
boundaries.
- The duplex gateway changes behavior only when the mode and per-run
setting enable it.
- A lost channel fails requests without replay, so callers must handle
indeterminate outcomes.
- The transport-selection change must require both `duplexCommandStream
=== true` and `enableSandboxDuplexBridge === true`.
- The provider credential and quota limits need operator control before
rollout.

## Model Used

OpenAI Codex, GPT-5, tool use and code execution.

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have searched GitHub for duplicate or related PRs and linked
them above
- [x] I have either (a) linked existing issues with `Fixes: #` /
`Closes: #` / `Refs: #` OR (b) described the issue in-PR following the
relevant issue template
- [x] I have not referenced internal/instance-local Paperclip issues or
links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip`
URLs)
- [x] My branch name describes the change (e.g. `docs/...`, `fix/...`)
and contains no internal Paperclip ticket id or instance-derived details
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [x] All Paperclip CI gates are green
- [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups
- [x] I will address all Greptile and reviewer comments before
requesting merge

---------

Co-authored-by: Paperclip <noreply@paperclip.ing>
2026-08-19 17:14:47 -07:00
Nicky LeachandPaperclip d5416fde9a fix(runtime): route sandbox git-bundle export through native syncOut (#11749)
## Thinking Path

> - Paperclip is the open source app people use to manage AI agents for
work
> - Sandbox-managed runtimes move files between a host and an isolated
sandbox
> - The git-bundle export path reads the full bundle into host memory
> - The workspace restore path already uses the provider native
`syncOut` transfer
> - This pull request uses `syncOut` for bundle export and keeps
`readFile` as a fallback
> - The change reduces host buffering and exposes the transfer to
provider tracing

## Linked Issues or Issue Description

**What happened?**

The sandbox git-bundle export used `client.readFile` even when the
provider supported native `syncOut`. The path buffered the full bundle
in host memory and used a chunked base64 command loop.

**Expected behavior**

The export should use one confined native file transfer when the
provider supports `syncOut`. Providers without that capability should
keep the existing `readFile` fallback.

**Steps to reproduce**

1. Prepare a sandbox-managed runtime with native `syncOut` support.
2. Export the sandbox git bundle.
3. Inspect the sync operations and file reads.
4. Confirm that the bundle uses one native file mapping and that the
status file still uses `readFile`.

**Paperclip version or commit**

Commit `3fc88d14be7133867897e87838276e15aba675fd`.

**Deployment mode**

Built from source. The change applies to sandbox-managed runtime
execution.

**Additional context**

This PR contains a focused bug fix. No public issue matched this change
during the duplicate search.

## What Changed

- Route bundle export through `nativeSyncOut` when the provider supports
it.
- Keep the existing `readFile` fallback for providers without native
sync support.
- Confine the native bundle mapping with `assertSyncOperationsConfined`.
- Cover the native path, fallback path, retry path, and confinement
checks with unit tests.

## Verification

- `npx vitest run
packages/adapter-utils/src/sandbox-managed-runtime.test.ts` — 52 tests
passed.
- `npx tsc --noEmit` in `packages/adapter-utils` — passed.
- The PR CI workflow must pass before merge.

## Risks

Low risk. The native path runs only when the provider advertises
`syncOut`. The existing `readFile` path remains available as a fallback.
Native transfer progress reports only start and finish events.

## Model Used

OpenAI GPT-5 Codex. Exact runtime model ID: GPT-5 Codex. Context window:
not exposed in this run. Capabilities used: code review, shell tools,
GitHub CLI, and Paperclip API coordination.

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have searched GitHub for duplicate or related PRs and linked
them above
- [x] I have either (a) linked existing issues with `Fixes: #` / `Closes
#` / `Refs #` OR (b) described the issue in-PR following the relevant
issue template
- [x] I have not referenced internal/instance-local Paperclip issues or
links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip`
URLs)
- [x] My branch name describes the change (e.g. `docs/...`, `fix/...`)
and contains no internal Paperclip ticket id or instance-derived details
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [x] All Paperclip CI gates are green
- [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups
- [x] I will address all Greptile and reviewer comments before
requesting merge

Co-authored-by: Paperclip <noreply@paperclip.ing>
2026-08-19 16:50:04 -07:00
Nicky LeachandPaperclip b8a76081ec feat(environments): expose boot-relevant drift attribution in the custom-image overview (#11751)
## Thinking Path

> - Paperclip is the open source app people use to manage AI agents for
work
> - Paperclip lets operators prepare and use custom images for sandbox
environments
> - The custom-image overview detected drift but did not show which boot
source changed
> - Operators need the changed field and values to understand why a
template no longer matches
> - This pull request adds safe drift attribution to the overview API
and the out-of-sync banner
> - The benefit is faster diagnosis without exposing secrets or internal
snapshot data

## Linked Issues or Issue Description

**Subsystem affected**

Cross-cutting (server and UI).

**Problem or motivation**

The custom-image overview reported drift without identifying the changed
boot source. Operators had to inspect other data to find the cause.

**Proposed solution**

Return a classified drift summary with changed paths and their prior and
current values. Show the boot-source field in the UI banner. Keep legacy
templates and unclassified drift on the generic message.

**Alternatives considered**

The change does not expose the full snapshot or fingerprint. This keeps
the overview contract small and avoids secret disclosure.

**Roadmap alignment**

The change supports the existing custom-image environment workflow and
does not duplicate a roadmap item.

## What Changed

- Add `activeTemplateDrift` to the custom-image overview response.
- Classify drift as `boot_source_drift`, `knob_only`, or `unclassified`.
- Return drifted paths with safe `from` and `to` values.
- Show the changed boot-source field and values in the out-of-sync
banner.
- Keep legacy templates fail-closed and exclude secrets, fingerprints,
and raw snapshots.
- Add server and UI tests for the new behavior.

## Verification

- `npx vitest run
server/src/__tests__/environment-custom-images-service.test.ts` passes
with 27 tests.
- `npx vitest run ui/src/pages/CompanyEnvironments.test.tsx` passes with
27 tests.
- `pnpm --filter @paperclipai/ui exec tsc --noEmit` passes.
- Review the overview response and banner cases for boot-source,
knob-only, and legacy drift.

## Risks

The overview response gains one optional field. Legacy templates remain
compatible because they return `unclassified` and keep the generic
banner. The service excludes secret values, fingerprints, and raw
snapshots.

## Model Used

OpenAI Codex, GPT-5, tool use and code execution enabled. The model
reviewed the handoff and managed the pull request.

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have searched GitHub for duplicate or related PRs and linked
them above
- [x] I have either (a) linked existing issues with `Fixes: #` /
`Closes: #` / `Refs: #` OR (b) described the issue in-PR following the
relevant issue template
- [x] I have not referenced internal/instance-local Paperclip issues or
links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip`
URLs)
- [x] My branch name describes the change (e.g. `docs/...`, `fix/...`)
and contains no internal Paperclip ticket id or instance-derived details
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [x] I have updated relevant documentation to reflect my changes
- [x] All Paperclip CI gates are green
- [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups
- [ ] I will address all Greptile and reviewer comments before
requesting merge

Co-authored-by: Paperclip <noreply@paperclip.ing>
2026-08-19 16:36:18 -07:00
Nicky LeachandPaperclip 8161244284 feat(sandbox): add opt-in duplex command-stream foundation (capability, protocol, bounded host route, frame codec) (#11738)
## Thinking Path

> - Paperclip provides a control plane for companies that run AI agents.
> - Sandboxed agents need a safe execution path for persistent command
streams.
> - The existing callback transport does not provide a bounded, generic
duplex route.
> - The host must control capability access, route identity, protocol
limits, and close behavior.
> - This pull request adds an opt-in duplex command-stream foundation
across the sandbox layers.
> - The feature stays inert because no current provider declares the
capability.

## Linked Issues or Issue Description

**Subsystem affected**

Cross-cutting (multiple of the above)

**Problem or motivation**

Sandbox command execution needs a persistent host-to-sandbox stream. The
current callback bridge uses a file transport and does not provide this
generic route.

**Proposed solution**

Add a fail-closed provider capability, generic worker protocol messages,
a host-owned bounded route, cross-layer service mediation, and a
versioned newline-delimited frame codec.

**Alternatives considered**

Keep the file transport and add feature-specific commands. This does not
provide one reusable duplex contract or host-owned route bounds.

**Roadmap alignment**

This work supports the completed Cloud / Sandbox agents roadmap area and
the safe autonomy goal in the product definition.

**Additional context**

The change passed a two-stage security review. The final code review
verdict was approve after fixes for active-stream bounds and
service-layer capability mediation.

## What Changed

- Add the opt-in `duplexCommandStream` provider capability with
fail-closed narrowing.
- Add duplex open, write, stop, and close requests and data and exit
notifications to the plugin worker protocol.
- Add a host-owned route with bounds for chunk size, cumulative bytes,
lifetime, protocol errors, pending requests, and pre-bind buffering.
- Add close acknowledgement handling with worker retirement when the
close remains unconfirmed.
- Wire `openDuplexChannel` through the execution target, runtime
service, and plugin worker.
- Add a versioned frame codec with shared wire-compatibility vectors and
split UTF-8 handling.

## Verification

- `server/src/__tests__/plugin-worker-manager-duplex.test.ts` passes 18
tests.
- `server/src/__tests__/environment-execution-target-duplex.test.ts`
passes 11 tests.
- `packages/adapter-utils/src/duplex-frame-codec.test.ts` passes 38
tests.
- `server/src/__tests__/sandbox-capability-contract.test.ts` passes 15
tests.
- Setup-token pseudo-terminal regression tests pass 47 tests.
- Server TypeScript check passes.
- Continuous integration will run the full required test, typecheck,
build, and policy checks.

## Risks

- Providers that opt into the capability must implement the complete
worker protocol.
- Route limit defaults can close a stream when a workload exceeds the
configured bounds.
- The capability remains disabled for current providers, so current
production behavior does not change.

## Model Used

OpenAI GPT-5 (`gpt-5`), with tool use and code execution. The model
reviewed and prepared this pull request from the supplied implementation
and verification record.

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have searched GitHub for duplicate or related PRs and linked
them above
- [x] I have either (a) linked existing issues with `Fixes: #` /
`Closes: #` / `Refs: #` OR (b) described the issue in-PR following the
relevant issue template
- [x] I have not referenced internal/instance-local Paperclip issues or
links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip`
URLs)
- [x] My branch name describes the change (e.g. `docs/...`, `fix/...`)
and contains no internal Paperclip ticket id or instance-derived details
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [x] All Paperclip CI gates are green
- [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups
- [x] I will address all Greptile and reviewer comments before
requesting merge

---------

Co-authored-by: Paperclip <noreply@paperclip.ing>
2026-08-19 13:39:13 -07:00
Nicky LeachandPaperclip e0e503e1bc fix(server): make blockers-resolved wake dedup level-triggered (#11732)
## Thinking Path

> - Paperclip is the open source app people use to manage AI agents for
work.
> - Paperclip uses issue dependencies to pause work until blockers reach
a ready state.
> - A blocked issue with several blockers can miss its wake when the
final blocker completes.
> - The wake deduplication used a historical per-edge key, so an old
completed wake hid the current ready state.
> - This pull request adds a level-triggered key for the sorted set of
blocker issue ids and uses one helper for all wake paths.
> - The benefit is that the final blocker wake can repair a missed wake,
while repeated reconciliation stays bounded.

## Linked Issues or Issue Description

Refs #8009, #7853, and #6719. These public pull requests cover related
dependency-wake and deduplication behavior. This pull request fixes a
separate multi-blocker state-key gap.

**What happened?**
A blocked issue with multiple blockers received no
`issue_blockers_resolved` wake when the final blocker completed. An
earlier completed per-edge wake suppressed the wake for the current
all-ready state.

**Expected behavior**
The final blocker completion must emit one wake for the current ready
state. A later reconciliation pass must not emit a second wake for the
same state.

**Steps to reproduce**
1. Create a blocked issue with at least two blocker issues.
2. Complete one blocker and record its completed per-edge wake.
3. Complete the final blocker.
4. Run the route-time or reconciliation wake path.
5. Confirm that one level-triggered wake exists for the sorted blocker
set.

**Paperclip version or commit**
`eed1e5cad91a37547e1b521232da04b9ddb316f0`

**Deployment mode**
Local dev from source.

## What Changed

- Add a SHA-256 level-triggered idempotency key from the sorted blocker
issue ids.
- Share one deduplication helper across route-time, finalize-time, and
periodic wake paths.
- Treat state-key rows with idempotent statuses as duplicates.
- Treat legacy per-edge rows as duplicates only while they remain in
flight.
- Record skipped route-time wakes without suppressing later
finalize-time or periodic wakes.
- Add regression coverage for a completed earlier-blocker wake and a
second reconciliation pass.

## Verification

- Run `npx vitest run
server/src/__tests__/issue-dependency-wakeups-routes.test.ts`.
- Run `npx vitest run
server/src/__tests__/heartbeat-issue-liveness-escalation.test.ts`.
- Run `npx vitest run
server/src/__tests__/heartbeat-dependency-scheduling.test.ts`.
- Run `npx vitest run server/src/__tests__/issue-rewake-throttle.test.ts
server/src/__tests__/recovery-stale-issue-lock-sweep.test.ts`.
- Run `tsc --noEmit` on the touched files.

## Risks

The change alters wake deduplication for dependency reconciliation. The
new key uses the full sorted blocker set, so a change in that set
permits a new wake. The regression tests cover the missed-final-blocker
case and repeated reconciliation.

## Model Used

OpenAI Codex, GPT-5, tool-use model with code execution and repository
review support.

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have searched GitHub for duplicate or related PRs and linked
them above
- [x] I have either (a) linked existing issues with `Fixes: #` / `Closes
#` / `Refs #` OR (b) described the issue in-PR following the relevant
issue template
- [x] I have not referenced internal/instance-local Paperclip issues or
links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip`
URLs)
- [x] My branch name describes the change (e.g. `docs/...`, `fix/...`)
and contains no internal Paperclip ticket id or instance-derived details
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [x] All Paperclip CI gates are green
- [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups
- [x] I will address all Greptile and reviewer comments before
requesting merge

Co-authored-by: Paperclip <noreply@paperclip.ing>
2026-08-19 12:52:50 -07:00
Nicky LeachandPaperclip 233be4b36c feat: parallelize sandbox file-sync behind a provider opt-in capability (#11736)
## Thinking Path

> - Paperclip runs AI agents through local and remote execution
adapters.
> - Sandbox providers move workspace and asset files before and after
agent runs.
> - Serial file transfers delay startup and teardown when several
operations do not depend on each other.
> - Providers need an opt-in contract so existing providers keep their
serial behavior.
> - This pull request adds a bounded scheduler and routes inbound and
outbound sync operations through it.
> - The benefit is shorter sandbox setup and teardown with stable
errors, clear telemetry, and a safe opt-in path.

## Linked Issues or Issue Description

**Subsystem affected**

Cross-cutting (multiple of the above): packages/shared,
packages/adapter-utils, packages/plugins, and server.

**Problem or motivation**

Sandbox sync processes the workspace, assets, and referenced projects in
series. This adds avoidable wait time to agent startup and teardown.

**Proposed solution**

Add a fail-closed provider capability named concurrentSyncOperations.
Use a bounded scheduler with a limit of four operations. Preserve
operation order for error reporting. Keep non-opted-in providers on the
serial path.

**Alternatives considered**

Increase the serial transfer speed or add provider-specific schedulers.
Those options do not provide one shared contract or stable behavior
across providers.

**Roadmap alignment**

ROADMAP.md lists cloud and sandbox agents as a product area. This change
improves sandbox execution without changing the control-plane contract.

**Additional context**

The Daytona provider opts in. Board trials on this commit showed overlap
for inbound sync and outbound restore, with no referenced-project
staging failures.

## What Changed

- Add the concurrentSyncOperations sandbox capability and fail-closed
parsing.
- Add a bounded settle-all scheduler with stable input-order errors.
- Parallelize inbound workspace, asset, and referenced-project sync
operations when the provider opts in.
- Parallelize outbound workspace and asset restore operations when the
provider opts in.
- Surface referenced-project failure text in run logs and server
telemetry.
- Add Daytona sync spans and the capability declaration.
- Preserve in-flight upload scratch tarballs during workspace wipe.
- Add unit and regression tests for the scheduler, coordinators,
provider behavior, telemetry, and wipe race.

## Verification

- Run the adapter-utils and server type checks.
- Run the targeted adapter-utils, server, and Daytona test suites.
- Run the full automated sweep.
- Review six cold Daytona trials, with three serial and three parallel
runs.
- Confirm that parallel trials show inbound overlap and outbound restore
overlap.
- Confirm that providers without the capability keep serial behavior.

## Risks

- Providers must opt in only when their file operations can run safely
at the same time.
- A provider that declares the capability incorrectly can expose
transfer races.
- The scheduler keeps a limit of four to bound resource use.
- Providers without the capability keep the prior serial behavior.

## Model Used

OpenAI GPT-5 in the Codex runtime. The model used tool calls, code
inspection, and GitHub workflow support. The model did not author the
implementation commits.

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have searched GitHub for duplicate or related PRs and linked
them above
- [x] I have either (a) linked existing issues with Fixes: # / Closes #
/ Refs # OR (b) described the issue in-PR following the relevant issue
template
- [x] I have not referenced internal/instance-local Paperclip issues or
links (only public GitHub #NNN / github.com/paperclipai/paperclip URLs)
- [x] My branch name describes the change and contains no internal
Paperclip ticket id or instance-derived details
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [x] All Paperclip CI gates are green
- [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups
- [x] I will address all Greptile and reviewer comments before
requesting merge

---------

Co-authored-by: Paperclip <noreply@paperclip.ing>
2026-08-19 12:34:11 -07:00
Nicky LeachandPaperclip e0b64529b3 feat(auth): normalize agent login in the sandbox onto one session table and a capability contract (#11730)
## Thinking Path

> - Paperclip is the open source app people use to manage AI agents for
work
> - Sandbox agents need a safe login path for each supported adapter
> - Codex device login and Claude setup-token login used separate
session stores and route logic
> - Separate stores made session lookup, expiry, and login capability
checks harder to keep consistent
> - This pull request unifies both flows on one session table and one
capability contract
> - The benefit is one company-scoped login model with public session
identifiers and shared lifecycle rules

## Linked Issues or Issue Description

**Subsystem affected**

Cross-cutting (multiple of the above)

**Problem or motivation**

Codex and Claude sandbox login used separate session stores and
different route paths. This split increased the risk of inconsistent
company scoping, session lookup, and cleanup.

**Proposed solution**

Use `adapter_auth_sessions` for both login flows. Use public session
identifiers for API access. Select login behavior from projected adapter
capability data. Share the route spine, lease arguments, runner
lifecycle, and reaper rules.

**Alternatives considered**

Keep two session tables and add matching fixes to both routes. This
keeps duplicate logic and does not provide one capability contract, so
this pull request uses shared infrastructure.

**Roadmap alignment**

This change supports the shipped Cloud / Sandbox agents milestone in
`ROADMAP.md`.

## What Changed

- Unify Codex device login and Claude setup-token login on
`adapter_auth_sessions`.
- Return and look up sessions with company-scoped public session
identifiers.
- Enforce one active session for each company, owner, and adapter.
- Share the login route spine, sandbox lease arguments, runner
lifecycle, and missing-auth check.
- Add a standalone setup-token reaper with adapter-specific row
selection.
- Add optional login capability projection for adapters and drive route
and UI selection from that data.
- Rename the provider flag to `supportsLoginPty` and validate its
deprecated alias.
- Remove the old Claude setup-token session table and add the required
migrations.

## Verification

- Server typecheck passed with `tsc`.
- Database typecheck passed.
- UI typecheck passed with `tsc -b`.
- Codex login service and route suites passed.
- Setup-token session, route, and reaper suites passed.
- Adapter session schema, plugin validator, capability projection, UI
render, and Daytona suites passed.
- GitHub Actions must confirm the complete CI gate after pull request
creation.

## Risks

- The migrations remove short-lived in-flight login rows during
deployment. A login that spans the migration can continue until its
provider lease expires.
- The Codex credential store remains company-scoped. A cross-owner
credential race remains a documented, board-accepted risk.
- API clients that use internal session row identifiers no longer work.
The API accepts only public session identifiers.

## Model Used

Codex, GPT-5, exact runtime model ID not exposed in this handoff, large
context window, reasoning, and repository tool use. The implementing
engineer produced the code with AI assistance.

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have searched GitHub for duplicate or related PRs and linked
them above
- [x] I have either (a) linked existing issues with `Fixes: #` /
`Closes: #` / `Refs: #` OR (b) described the issue in-PR following the
relevant issue template
- [x] I have not referenced internal/instance-local Paperclip issues or
links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip`
URLs)
- [x] My branch name describes the change (e.g. `docs/...`, `fix/...`)
and contains no internal Paperclip ticket id or instance-derived details
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [x] All Paperclip CI gates are green
- [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups
- [x] I will address all Greptile and reviewer comments before
requesting merge

---------

Co-authored-by: Paperclip <noreply@paperclip.ing>
2026-08-19 11:51:31 -07:00
Nicky LeachandPaperclip 8b2dbd9d87 chore(deps): open one dependabot PR per major update (#11709)
## Thinking Path

> - Paperclip is the open source app people use to manage AI agents for
work.
> - Dependabot keeps the project dependencies current.
> - The npm update rule groups all major updates into one pull request.
> - One blocked major update can stop that grouped pull request.
> - This pull request gives each major update its own pull request.
> - The higher limit keeps the initial major updates and normal updates
visible.

## Linked Issues or Issue Description

**What happened?**

Dependabot grouped all npm major updates into one weekly pull request. A
blocked upgrade stopped the grouped pull request and hid other ready
updates.

**Expected behavior**

Dependabot should open one pull request for each npm major update.

**Steps to reproduce**

1. Read the npm entry in `.github/dependabot.yml`.
2. Run the weekly Dependabot update.
3. Inspect the pull requests for major npm updates.

**Paperclip version or commit**

`master` at the base commit for this pull request.

**Deployment mode**

Not applicable. This change affects repository configuration.

**Installation method**

Not applicable. This change affects repository configuration.

**Agent adapter(s) involved**

Not adapter-specific (repository configuration).

**Database mode**

Not database-related.

**Additional context**

The grouped major update included a blocked `js-yaml` upgrade. Separate
pull requests let other major updates proceed independently.

## What Changed

- Remove the `major-updates` group from the npm Dependabot entry.
- Raise the npm `open-pull-requests-limit` from 10 to 20.
- Keep the GitHub Actions Dependabot entry unchanged.

## Verification

- Run `python3 -c "import yaml;
yaml.safe_load(open('.github/dependabot.yml'))"`.
- Confirm the diff changes only `.github/dependabot.yml`.
- Confirm CI passes on this pull request.

## Risks

This change can open more Dependabot pull requests. The limit of 20
bounds the number of open npm update pull requests. No application code
changes.

## Model Used

OpenAI GPT-5. Tool use and code repository inspection assisted this
change.

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have searched GitHub for duplicate or related PRs and linked
them above
- [x] I have either (a) linked existing issues with `Fixes: #` /
`Closes: #` / `Refs #` OR (b) described the issue in-PR following the
relevant issue template
- [x] I have not referenced internal/instance-local Paperclip issues or
links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip`
URLs)
- [x] My branch name describes the change (e.g. `docs/...`, `fix/...`)
and contains no internal Paperclip ticket id or instance-derived details
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [x] All Paperclip CI gates are green
- [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups
- [x] I will address all Greptile and reviewer comments before
requesting merge

Co-authored-by: Paperclip <noreply@paperclip.ing>
2026-08-19 09:13:27 -07:00
Nicky LeachandPaperclip 120ae5428f feat(server): add a one-click relink action for detached custom-image templates (#11641)
## Thinking Path

> - Paperclip is the open source app people use to manage AI agents for
work
> - Paperclip environments can use captured custom images for agent runs
> - A configuration fingerprint change can detach a valid custom-image
template
> - Operators need a safe way to confirm that the image still matches
the boot source
> - This pull request adds a guarded relink action with drift
classification and audit logging
> - The benefit is a deliberate relink without a new sandbox boot or
provider snapshot

## Linked Issues or Issue Description

**Subsystem affected**

Cross-cutting environment, server, and UI behavior.

**Problem or motivation**

A custom-image template detaches when the environment configuration
fingerprint changes. The runtime then uses the base image, even when the
boot source did not change. The only prior remedy required a full
re-capture.

**Proposed solution**

Add an operator-triggered relink action. Classify configuration drift
from a server-owned boot-relevant snapshot. Relink knob-only drift
without confirmation. Require explicit confirmation for boot-source or
unclassified drift. Guard the route for instance administrators and
record a safe activity event.

**Alternatives considered**

Keep requiring a full re-capture. This adds a sandbox boot and provider
snapshot for cases where the image remains correct.

**Roadmap alignment**

The roadmap has no matching custom-image relink item. This change
addresses an environment operation gap.

**Additional context**

The relink response exposes raw drift values only in the transient 409
response to the instance administrator. The service never persists or
logs fingerprints or configuration values. Reserved identity-path
segments fail closed.

## What Changed

- Add `relinkActiveTemplate` with drift classification and conditional
fingerprint update.
- Persist a server-owned boot-relevant configuration snapshot during
capture.
- Add the guarded relink route with strict request validation and
activity logging.
- Add the relink action and confirmation flow to the environment page.
- Add service, route, UI, and OpenAPI coverage.

## Verification

- Run the focused service suite: `pnpm vitest run
server/src/services/environment-custom-images-service.test.ts`.
- Run the focused route suite: `pnpm vitest run
server/src/routes/environment-custom-image-routes.test.ts`.
- Run the focused UI suite: `pnpm vitest run
ui/src/pages/CompanyEnvironments.test.tsx`.
- Run server and UI TypeScript checks.
- Confirm the OpenAPI snapshot matches the new route.
- Confirm all required GitHub checks pass on commit
`e46fdcfe94a719be854adf8849d30714e5b70b93`.
- Confirm Greptile reports 5/5 with no unresolved review threads.

## Risks

The relink action can keep an image after configuration drift. The
service requires explicit confirmation for boot-source or unclassified
drift. Reserved path segments produce a safe unresolved marker and never
enter stored values.

## Model Used

OpenAI GPT-5 Codex. The model used repository inspection, GitHub
operations, and PR preparation with tool use and code execution. The
runtime did not expose a context-window value or a separate
reasoning-mode value.

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have searched GitHub for duplicate or related PRs and linked
them above
- [x] I have either (a) linked existing issues with `Fixes: #` / `Closes
#` / `Refs #` OR (b) described the issue in-PR following the relevant
issue template
- [x] I have not referenced internal/instance-local Paperclip issues or
links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip`
URLs)
- [x] My branch name describes the change (e.g. `docs/...`, `fix/...`)
and contains no internal Paperclip ticket id or instance-derived details
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [x] All Paperclip CI gates are green
- [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups
- [x] I will address all Greptile and reviewer comments before
requesting merge

---------

Co-authored-by: Paperclip <noreply@paperclip.ing>
2026-08-18 11:43:39 -07:00
fe803bedf1 feat(server): add a configurable cooldown to the terminal workspace reaper (#11642)
## Thinking Path

> - Paperclip is an open source app that manages AI agents for work.
> - The server manages execution workspaces and their worktrees.
> - The terminal workspace reaper removes a workspace when its issue
tree reaches a terminal state.
> - Immediate removal prevents a person from reopening recently
completed work.
> - This pull request adds a configurable cooldown before the reaper
archives the workspace.
> - The cooldown keeps recent work available and keeps immediate cleanup
available with value `0`.

## Linked Issues or Issue Description

Refs: #7790

**Problem**

The reaper archives an execution workspace and deletes its worktree as
soon as the issue tree becomes terminal. A person cannot reopen recent
work without extra effort.

**Expected behavior**

The reaper should keep a recently completed workspace during a
configurable cooldown window. It should archive older work and support
immediate cleanup when the value is `0`.

**Proposed solution**

Read the cooldown from `PAPERCLIP_WORKSPACE_REAPER_COOLDOWN_DAYS`. Use a
seven-day default. Use the latest terminal timestamp in the source issue
tree as the cooldown anchor.

## What Changed

- Add `PAPERCLIP_WORKSPACE_REAPER_COOLDOWN_DAYS` with a seven-day
default.
- Treat `0` as no cooldown and use the default for negative or
non-numeric values.
- Use the latest `completedAt` or `cancelledAt` value in the source
issue tree.
- Use `updatedAt` when a terminal timestamp is null.
- Skip candidates inside the cooldown and report them in
`skippedCooldown`.
- Recheck the cutoff during the guarded archive operation.
- Document the environment variable and add focused tests.

## Verification

- Run `npx vitest run
server/src/__tests__/execution-workspaces-service.test.ts`.
- Confirm that the test run passes 66 tests.
- Confirm that the tests cover a recent tree, an old tree, value `0`,
and a null terminal timestamp.
- Confirm that the changed files pass `tsc --noEmit`.

## Risks

The default changes terminal workspace cleanup from immediate removal to
a seven-day delay. A value of `0` preserves immediate cleanup. The
guarded archive check limits race risk during concurrent lifecycle
changes.

> For core feature work, check [`ROADMAP.md`](ROADMAP.md) first and
discuss it in `#dev` before opening the PR. Feature PRs that overlap
with planned core work may need to be redirected — check the roadmap.

## Model Used

OpenAI Codex, GPT-5, tool use and code execution. This model assisted
with the implementation review and PR preparation.

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have searched GitHub for duplicate or related PRs and linked
them above
- [x] I have either (a) linked existing issues with `Fixes: #` /
`Closes: #` / `Refs: #` OR (b) described the issue in-PR following the
relevant issue template
- [x] I have not referenced internal/instance-local Paperclip issues or
links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip`
URLs)
- [x] My branch name describes the change (e.g. `docs/...`, `fix/...`)
and contains no internal Paperclip ticket id or instance-derived details
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [x] All Paperclip CI gates are green
- [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups
- [x] I will address all Greptile and reviewer comments before
requesting merge

---------

Co-authored-by: Paperclip <noreply@paperclip.ing>
Co-authored-by: greptile-apps[bot] <165735046+greptile-apps[bot]@users.noreply.github.com>
2026-08-18 11:23:27 -07:00
Nicky LeachandPaperclip 0e9b03832d fix(server): skip host provisionCommand for sandbox-driver environments (#11626)
## Thinking Path

> - Paperclip is the open source app people use to manage AI agents for
work
> - The run orchestrator prepares an execution environment before an
agent starts
> - A sandbox driver creates a remote folder before the adapter uploads
repository content
> - The orchestrator ran the host `provisionCommand` in that empty
folder
> - The command failed with exit 127 before the adapter could run its
`stage.sync` step
> - This pull request skips host provisioning for sandbox drivers and
keeps the existing local and SSH behavior
> - The benefit is that sandbox runs reach the adapter sync step without
an empty-folder setup failure

## Linked Issues or Issue Description

**What happened?**

A sandbox environment ran the host `provisionCommand` before the adapter
uploaded repository content. The command ran in an empty remote folder
and failed with exit 127.

**Expected behavior**

The orchestrator should skip host provisioning for a sandbox driver. The
adapter should upload the provisioned tree during its `stage.sync` step.

**Steps to reproduce**

1. Configure an environment with the `sandbox` driver and a host
`provisionCommand`.
2. Start a run that uses this environment.
3. Observe that the command runs in the empty sandbox folder and the run
fails with `setup_failed`.

**Paperclip version or commit**

Reproduced on the current `master` commit before this change.

**Deployment mode**

Built from source with a sandbox environment.

**Installation method**

Built from source with pnpm.

**Agent adapter(s) involved**

Not adapter-specific (core bug). The sandbox adapter syncs the tree
after environment setup.

**Database mode**

Not database-related.

**Additional context**

Related context:
[#11091](https://github.com/paperclipai/paperclip/pull/11091) changes
provision behavior for reused workspaces. This pull request covers the
separate sandbox ordering failure.

## What Changed

- Skip the orchestrator provision step when `environment.driver` is
`sandbox`.
- Keep the existing skip for `local` and the provision step for `ssh`.
- Log one info message when a sandbox skip drops a present command.
- Keep the existing `plugin` path because it has no `stage.sync` step
and runs against the host filesystem.
- Add tests for sandbox, local, SSH, plugin, logging, and provision
failures.

## Verification

- Run `./node_modules/.bin/vitest run
server/src/__tests__/environment-run-orchestrator.test.ts`.
- Confirm that the test run passes all 10 tests.
- Confirm that CI checks pass on this pull request.

## Risks

- Low risk. The change affects only the provision gate for sandbox
drivers.
- SSH and local behavior stays unchanged.
- The plugin driver stays on its current path.
- The new log line makes a sandbox skip visible to operators.

## Model Used

OpenAI, GPT-5, exact runtime model `gpt-5`, with tool use and code
review support. The implementation author used this model to inspect
code, edit source and tests, and run the targeted test suite.

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have searched GitHub for duplicate or related PRs and linked
them above (no exact duplicate found; related PR #11091 reviewed)
- [x] I have either (a) linked existing issues with `Fixes: #` /
`Closes: #` / `Refs: #` OR (b) described the issue in-PR following the
relevant issue template
- [x] I have not referenced internal/instance-local Paperclip issues or
links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip`
URLs)
- [x] My branch name describes the change (e.g. `docs/...`, `fix/...`)
and contains no internal Paperclip ticket id or instance-derived details
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [x] I have updated relevant documentation to reflect my changes (no
documentation change applies to this internal gate correction)
- [x] I have considered and documented any risks above
- [x] All Paperclip CI gates are green
- [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups
- [x] I will address all Greptile and reviewer comments before
requesting merge

---------

Co-authored-by: Paperclip <noreply@paperclip.ing>
2026-08-18 09:29:31 -07:00
Nicky LeachandPaperclip b446ff59bf refactor(acpx-engine): coordinator-owned ACP run lifecycle with a typed resource ledger (#11576)
## Thinking Path

> - Paperclip is the open source app people use to manage AI agents for
work
> - Agent adapters run agent sessions through the ACPX engine
> - The ACPX engine handled one run attempt as a long implicit procedure
> - That shape made resource ownership, cleanup order, and failure
behavior hard to verify
> - This pull request gives the attempt a coordinator, a typed resource
ledger, separate run sites, and explicit turn and settlement sequences
> - The benefit is clear ownership, one cleanup path, safer session
reuse, and testable failure behavior

## Linked Issues or Issue Description

**What existing behavior does this improve?**

The ACPX engine manages startup, turn execution, session reuse, and
cleanup inside one large run procedure.

**Current behavior**

The run procedure owns several resources through implicit control flow.
Cleanup and session reuse behavior depend on lane-specific branches and
error paths.

**Proposed behavior**

The coordinator owns the run attempt. A typed ledger records six
resources and their states. Host and sandbox run sites own lane-specific
acquisition. Turn and settlement sequences expose typed outcomes. The
engine emits allowlisted phase telemetry.

**Reason and benefit**

Explicit ownership makes cleanup and failure behavior easier to inspect.
The fault matrix and characterization tests protect the external result
while the refactor reduces hidden control flow.

**Breaking changes**

None to the public adapter contract. The host warm-save path now closes
and relaunches the runtime because a transferred runtime could retain a
run-scoped credential. A cold session-handshake failure now closes the
created runtime.

**Additional context**

This pull request contains the ACPX engine lifecycle refactor, its
tests, and the lifecycle document.

## What Changed

- Add a run coordinator for startup, turn execution, settlement, and
result reproduction.
- Add a typed resource ledger with open, sealed, and consumed states.
- Add host and sandbox run sites for lane-specific resource acquisition.
- Replace separate runtime maps with a generic session reuse store.
- Split session fingerprint identity from the outer session key.
- Add typed turn and settlement sequences with one cleanup owner.
- Add a closed allowlist for phase telemetry.
- Add characterization tests and a 17-case fault matrix.
- Add `doc/acp-run-lifecycle.md`.

## Verification

- `npx vitest run packages/adapter-utils/src/acpx-engine/` passes 18
files and 286 tests at the submitted commit.
- `pnpm --filter @paperclipai/adapter-utils typecheck` reports 0 errors
at the submitted commit.
- Run the full pull request checks after GitHub starts CI.
- Run Greptile review after the pull request opens.

## Risks

- The refactor changes internal control flow across the ACPX engine.
- Host warm-save behavior now closes and relaunches the runtime.
- Settlement changes the handling of a cold session-handshake failure
from a leak to a close.
- The characterization baselines and fault matrix reduce the risk of an
external behavior change.

> Paperclip is the open source app people use to manage AI agents for
work
> The adapter layer runs agent sessions through the ACPX engine
> The engine needs explicit lifecycle ownership for reliable cleanup
> This pull request adds coordinator-owned phases and a typed resource
ledger
> The result makes lifecycle behavior easier to test and review

## Model Used

OpenAI GPT-5 Codex. Exact model ID: GPT-5. The model used tool
execution, repository inspection, and code review support. The
implementation author supplied the submitted code.

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have searched GitHub for duplicate or related PRs and linked
them above
- [x] I have either (a) linked existing issues with `Fixes: #` / `Closes
#` / `Refs #` OR (b) described the issue in-PR following the relevant
issue template
- [x] I have not referenced internal/instance-local Paperclip issues or
links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip`
URLs)
- [x] My branch name describes the change (e.g. `docs/...`, `fix/...`)
and contains no internal Paperclip ticket id or instance-derived details
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [x] All Paperclip CI gates are green
- [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups
- [x] I will address all Greptile and reviewer comments before
requesting merge

---------

Co-authored-by: Paperclip <noreply@paperclip.ing>
2026-08-17 22:02:16 -07:00
Nicky LeachandPaperclip c1c46f1e4e feat: Claude login on the new-agent page before agent creation (#11347)
## Thinking Path

> - Paperclip is the open source app people use to manage AI agents for
work
> - The Claude local adapter supports subscription login through a
sandbox
> - The new-agent page must show login before the user creates an agent
> - Test results must not expose raw sandbox diagnostics or secret
values
> - This pull request adds the login UI to both Test lanes and closes
the diagnostic boundary
> - The branch also adds durable cleanup recovery for failed sandbox
teardown
> - Reusable sandboxes must retain both their recorded teardown
configuration and a valid lifecycle path until destruction succeeds
> - The benefit is a usable login flow with fixed public checks,
redacted server logs, and recoverable sandbox cleanup

## Linked Issues or Issue Description

Related public work:
[#9488](https://github.com/paperclipai/paperclip/pull/9488) adds
first-class recognition for `CLAUDE_CODE_OAUTH_TOKEN` in headless and
remote runs. Related public issue:
[#2681](https://github.com/paperclipai/paperclip/issues/2681) requests
Claude Code subscription support. This pull request adds the login
transport and new-agent UI flow that those changes do not provide.

**Subsystem affected:** Claude local adapter, server login probes,
sandbox provider setup, cleanup recovery, and the new-agent UI.

**Problem or motivation:** The Test lanes did not show the sandbox login
panel in all supported cases. Test results also exposed raw probe
diagnostics, and JSON escapes could end secret redaction early.

**Proposed solution:** Surface the login capability through the bundled
provider manifest. Prepare the same probe runtime in the ACP lane. Send
diagnostics only to redacted server logs. Keep Test checks on fixed
public messages. Normalize login URL hints to allowlisted HTTPS Claude
and Anthropic hosts. Consume JSON escapes during redaction. Preserve
failed sandbox cleanup state across retries and restarts, and prevent
deletion from severing the lifecycle context of a live reusable sandbox.

**Alternatives considered:** Keep raw diagnostics in Test checks or
trust login URL text from the sandbox. Both choices increase information
exposure. Keep separate probe behavior in the ACP lane. That choice
would leave the two Test lanes inconsistent.

## What Changed

- Surface the sandbox login panel on both Test lanes.
- Reconcile the bundled Daytona plugin manifest so
`supportsSetupTokenLogin` reaches the UI capability gate.
- Prepare the ACP Test lane with the same probe runtime as the CLI Test
lane.
- Add the `claude_acp_login_probe_unavailable` warning when the ACP
probe cannot run.
- Send raw sandbox diagnostics only to redacted server logs.
- Keep Test checks on fixed public messages in the ACP, managed-config,
and CLI paths.
- Normalize login URL hints to allowlisted HTTPS Claude and Anthropic
hosts.
- Redact JSON and escaped-JSON secret values, including escaped quotes
and backslashes.
- Preserve orphan cleanup records across provider failures, restarts,
and unavailable plugins.
- Atomically block environment deletion while a live reusable sandbox
lease still depends on it.
- Verify pending cleanup destroys plugin sandboxes with the provider
configuration recorded on the lease, even after the current environment
configuration changes.

## Verification

- Head under review: `506b7fa2d83c36bfa5fd722ee9d95b0c7431c241`.
- Focused environment route/service/runtime coverage passes: 196 tests
across 3 files.
- `pnpm -r typecheck` passes.
- `pnpm build` passes.
- The full Vitest run completed with 4,754 passing and 28 failing tests.
All 23 source-test failures reproduce unchanged on parent head
`58cfe61a33191ce03d965d65085d26064b4888ba`; the other 5 are duplicate
executions from stale `server/dist` output. The failures are unrelated
macOS path/listener and scheduler-fixture failures, so there is no new
bad commit for bisect to localize.
- All required CI checks pass for the current head, including build,
typecheck/release registry, all server and workspace shards, serialized
server suites, canary, and e2e.
- A fresh Greptile review for `506b7fa2d83c36bfa5fd722ee9d95b0c7431c241`
reports 5/5, “safe to merge,” with no blocking failure remaining.

## Risks

- A probe or redaction change could hide useful server diagnostics.
- An allowlist change could reject a valid Claude login URL.
- Cleanup recovery changes could affect provider teardown ordering.
- An environment with a live reusable sandbox can no longer be deleted
until the owning issue or execution workspace completes teardown.
- The implementation keeps public Test messages fixed and sends detail
to redacted server logs.

## Model Used

OpenAI GPT-5 via Codex — exact model ID: GPT-5; tool use and code
execution enabled; extended reasoning enabled. The implementation author
used AI-assisted development.

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have searched GitHub for duplicate or related PRs and linked
them above
- [x] I have either (a) linked existing issues with `Fixes: #` /
`Closes: #` / `Refs: #` OR (b) described the issue in-PR following the
relevant issue template
- [x] I have not referenced internal/instance-local Paperclip issues or
links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip`
URLs)
- [x] My branch name describes the change (e.g. `docs/...`, `fix/...`)
and contains no internal Paperclip ticket id or instance-derived details
- [x] I have run tests locally and documented the result
- [x] I have added or updated tests where applicable
- [x] I have updated relevant documentation or confirmed no separate
documentation change is needed
- [x] I have considered and documented any risks above
- [x] All Paperclip CI gates are green
- [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups
- [x] I will address all Greptile and reviewer comments before
requesting merge

---------

Co-authored-by: Paperclip <noreply@paperclip.ing>
2026-08-17 13:42:51 -07:00
Nicky LeachandPaperclip 3061ce6901 feat(sandbox): stream session output by capability, drop three operator flags (#11557)
## Thinking Path

> - Paperclip is the open source app people use to manage AI agents for
work
> - Sandboxed agents use provider capabilities to select safe execution
paths
> - Session output still depends on three operator flags that duplicate
capability data
> - Duplicate flags can drift from the verified sandbox capability
snapshot
> - This pull request makes the capability snapshot the only streaming
decision and removes the obsolete flags
> - The benefit is default streaming with a poll fallback when a
capability or stream fails

## Linked Issues or Issue Description

**What existing behavior does this improve?**

ACP sandbox session-output streaming and sandbox execution
configuration.

**Subsystem affected**

Cross-cutting (multiple of the above): server/, packages/shared/,
packages/adapter-utils/, and packages/plugins/.

**Current behavior**

Session-output streaming requires operator flags in the server and
Daytona plugin configuration. Saved configurations can retain a removed
key.

**Proposed behavior**

The verified capability snapshot selects streaming. The Daytona plugin
uses persistent sessions by default, keeps bypass commands one-shot, and
falls back from the log stream to polling. Removed configuration keys
become inert.

**Reason and benefit**

One capability source prevents configuration drift. The fallback keeps
output available when capability resolution or log streaming fails.

**Breaking changes**

The three operator flags no longer control session-output streaming.
Existing saved keys load but have no effect.

## What Changed

- Remove `useSessions` and `useLogStream` from the Daytona plugin
configuration and manifest.
- Remove `streamAgentSessionOutput` from server configuration, shared
types, and execution-target plumbing.
- Select streaming from `persistentProcessSessions` and
`independentControlCommands`.
- Keep poll fallback on capability resolution failure and stream
failure.
- Strip removed keys from strict fake-sandbox and catchall plugin
configuration.
- Update the sandbox capability documentation and focused tests.

## Verification

- `tsc --noEmit` passed in `packages/shared`, `packages/adapter-utils`,
`server`, and the Daytona plugin.
- Daytona `plugin.test.ts` passed 139 tests.
- Server capability, configuration, route, and runtime suites passed 160
tests.
- `packages/adapter-utils` `execution-target-sandbox.test.ts` passed 44
tests.
- The capability matrix covers stream, poll, and resolution-failure
paths.
- Removed-key tests cover strict fake-sandbox and catchall plugin
schemas.

## Risks

- A capability snapshot that lacks either required session capability
uses polling.
- A log stream failure uses polling and can increase request count.
- Existing removed configuration keys no longer change behavior.
- The isolated-worktree Daytona Vitest run has a pre-existing missing
`packages/adapters/droid-local` reference. CI and standard checkouts use
the committed configuration.

## Model Used

OpenAI Codex, GPT-5, tool use and code review assistance. The exact
runtime context window is managed by the Codex platform.

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have searched GitHub for duplicate or related PRs and linked
them above
- [x] I have either (a) linked existing issues with `Fixes: #` /
`Closes: #` / `Refs: #` OR (b) described the issue in-PR following the
relevant issue template
- [x] I have not referenced internal/instance-local Paperclip issues or
links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip`
URLs)
- [x] My branch name describes the change (e.g. `docs/...`, `fix/...`)
and contains no internal Paperclip ticket id or instance-derived details
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [x] All Paperclip CI gates are green
- [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups
- [x] I will address all Greptile and reviewer comments before
requesting merge

---------

Co-authored-by: Paperclip <noreply@paperclip.ing>
2026-08-17 13:25:30 -07:00
Nicky LeachandPaperclip e71ce9a9d3 feat: sandbox provider capability contract with fail-closed effective resolution (#11463)
## Thinking Path

> - Paperclip is the open source app people use to manage AI agents for
work
> - Paperclip runs work through adapters and sandbox providers
> - Providers need a clear contract so the server can use only verified
capabilities
> - A declared capability must not grant a method that the live worker
did not verify
> - This pull request adds manifest declarations and fail-closed
effective capability resolution
> - The benefit is safe provider reuse across execution targets and run
lifecycles

## Linked Issues or Issue Description

**Subsystem affected**

Cross-cutting (multiple of the above)

**Problem or motivation**

Sandbox providers expose different runtime methods. The server needs one
safe capability contract that accounts for provider declarations, worker
verification, and narrowing configuration.

**Proposed solution**

Add strict manifest validation for five sandbox capabilities. Resolve
effective capabilities as the subset of verified, declared, and narrowed
values. Store the result as a frozen execution-target snapshot.

**Alternatives considered**

Trusting the manifest alone could grant methods that the worker does not
support. Trusting only a fixed built-in list would reject valid
third-party providers. The intersection rule keeps the verified runtime
ceiling and supports both provider types.

**Roadmap alignment**

This change supports the ACP run lifecycle track and the sandbox
provider contract work in the current roadmap.

**Additional context**

The legacy `supportsReusableLeases` field remains supported. The nested
capability validator rejects unknown keys. Missing or unavailable
verification resolves all capabilities to `false`.

## What Changed

- Add strict `sandboxCapabilities` manifest validation with legacy
reusable-lease compatibility.
- Carry declarations through the ready-driver projection.
- Add fail-closed effective resolution from verified, declared, and
narrowed capabilities.
- Add narrowing for provider configuration, Kubernetes Job leases, and
Daytona sessions.
- Add a frozen read-only capability snapshot to execution targets.
- Add focused tests and keep existing characterization baselines
covered.
- Add and update sandbox provider capability documentation.

## Verification

- `npx vitest run packages/shared/src/validators/plugin.test.ts`
- `npx vitest run
server/src/__tests__/plugin-environment-driver-sandbox-capabilities.test.ts`
- `npx vitest run
server/src/__tests__/sandbox-capability-contract.test.ts`
- `npx vitest run
server/src/__tests__/environment-execution-target-capabilities.test.ts`
- `npx vitest run
packages/adapter-utils/src/acpx-engine/startup-characterization.test.ts
packages/adapter-utils/src/acpx-engine/turn-characterization.test.ts
packages/adapter-utils/src/acpx-engine/settlement-characterization.test.ts
packages/adapter-utils/src/acpx-engine/composed-run-characterization.test.ts`
- Package typechecks for shared, server, and adapter-utils pass.
- Stage-2 security review suites pass with 28 tests.

## Risks

The resolver fails closed when verification is absent or unavailable.
Providers that rely on undeclared capabilities may see narrower behavior
until they expose verified worker methods. The change does not alter the
existing native-sync guard.

## Model Used

OpenAI Codex, GPT-5, exact runtime model ID `gpt-5`, tool use and code
execution. The implementation author used this model to assist with the
change.

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have searched GitHub for duplicate or related PRs and linked
them above
- [x] I have either (a) linked existing issues with `Fixes: #` /
`Closes: #` / `Refs: #` OR (b) described the issue in-PR following the
relevant issue template
- [x] I have not referenced internal/instance-local Paperclip issues or
links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip`
URLs)
- [x] My branch name describes the change (e.g. `docs/...`, `fix/...`)
and contains no internal Paperclip ticket id or instance-derived details
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [x] All Paperclip CI gates are green
- [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups
- [x] I will address all Greptile and reviewer comments before
requesting merge

---------

Co-authored-by: Paperclip <noreply@paperclip.ing>
2026-08-17 10:55:40 -07:00
Nicky LeachandPaperclip cd501499a2 test: add ACPX run lifecycle characterization baselines (#11461)
## Thinking Path

> - Paperclip is the open source app people use to manage AI agents for
work
> - The adapter runtime starts, turns, settles, and composes ACPX runs
> - Recent lifecycle corrections changed several order and cleanup rules
> - Those rules need regression coverage before the planned engine
refactor
> - This pull request adds characterization suites for the corrected
behavior
> - The benefit is a clear test baseline for the next refactor

## Linked Issues or Issue Description

**What existing behavior does this improve?**

The ACPX adapter runtime and server heartbeat lifecycle need stable
regression coverage for their current corrected behavior.

**Subsystem affected**

Cross-cutting (multiple of the above): `packages/adapter-utils` and
`server` test suites.

**Current behavior**

The runtime has corrected rules for startup, turns, settlement, composed
results, and heartbeat terminalization. The repository lacks a single
characterization baseline for these rules.

**Proposed behavior**

Keep the current lifecycle rules pinned by five test suites. Let the
later engine refactor change behavior only when it updates these tests
with a clear reason.

**Reason and benefit**

The suites expose order, cleanup, transport, timeout, retry, result, and
lease-release changes during the refactor. They also record one known
latent defect as current behavior.

**Breaking changes**

None. This pull request adds tests only.

## What Changed

- Add startup characterization coverage for commands, launch values,
session fingerprints, sync order, bridge overlap, and cleanup paths.
- Add turn characterization coverage for inputs, events, transports,
timeout and cancel behavior, retry rules, errors, and usage.
- Add settlement characterization coverage for teardown, adapter
sync-back, workspace restore order, native sync, and error policy.
- Add composed-run characterization coverage for result forms,
finalization sets, and host-lane warm save and warm hit behavior.
- Add server coverage that checks run terminalization before environment
lease release.

## Verification

- Run `npx vitest run
packages/adapter-utils/src/acpx-engine/startup-characterization.test.ts
packages/adapter-utils/src/acpx-engine/turn-characterization.test.ts
packages/adapter-utils/src/acpx-engine/settlement-characterization.test.ts
packages/adapter-utils/src/acpx-engine/composed-run-characterization.test.ts
packages/adapter-utils/src/acpx-engine/execute.test.ts`.
- Run `npx vitest run
server/src/__tests__/heartbeat-run-terminalize-before-release.test.ts`.
- The adapter-utils run passes 178 tests, and the server run passes 4
tests.
- Check `pnpm --filter @paperclipai/adapter-utils typecheck`.
- Check `pnpm --filter @paperclipai/server typecheck`.

## Risks

Low risk. The change adds test files and does not change production
code. One known cold ensure-session cleanup defect remains pinned as
current behavior.

## Model Used

OpenAI Codex, GPT-5, with tool use and code execution.

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have searched GitHub for duplicate or related PRs and linked
them above
- [x] I have either (a) linked existing issues with `Fixes: #` / `Closes
#` / `Refs #` OR (b) described the issue in-PR following the relevant
issue template
- [x] I have not referenced internal/instance-local Paperclip issues or
links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip`
URLs)
- [x] My branch name describes the change (e.g. `docs/...`, `fix/...`)
and contains no internal Paperclip ticket id or instance-derived details
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [x] All Paperclip CI gates are green
- [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups
- [x] I will address all Greptile and reviewer comments before
requesting merge

---------

Co-authored-by: Paperclip <noreply@paperclip.ing>
2026-08-15 21:36:59 -07:00
Nicky LeachandPaperclip e52b8a343f fix: ACP run lifecycle corrections — failure settlement, workspace sync-back, lease cleanup (#11454)
## Thinking Path

> - Paperclip is the open source app people use to manage AI agents for
work.
> - Agent adapters run ACP sessions and manage runtime, workspace, and
lease resources.
> - Several failure paths left runtime bridges, staged workspaces, or
environment leases active after an error.
> - These leaks reduce run reliability and can leave later runs without
clean resources.
> - This pull request closes the failure paths, applies one teardown
policy, and adds regression tests.
> - The benefit is consistent failure settlement and safer reuse of
agent workspaces and leases.

## Linked Issues or Issue Description

**What happened?**

ACP runs could leave runtime bridges, staged workspaces, or environment
leases active after failures. Claude and Gemini ACP runs did not restore
the sandbox workspace on teardown. Lease release stopped when one lease
returned an error.

**Expected behavior**

Each ACP failure must return an error result and settle its resources.
Teardown must run each step, release leases independently, and restore
the host workspace when the sandbox ends. Pending cleanup leases must
receive bounded retry attempts.

**Steps to reproduce**

1. Run an ACP session that fails after runtime creation or during turn
preparation.
2. Run an ACP session that fails during a warm hit or staged runtime
handoff.
3. Run lease cleanup with more than one lease when the first release
returns an error.
4. Inspect the result phase, teardown calls, workspace state, and lease
metadata.
5. Run the regression suites listed in the Verification section.

## What Changed

- Settle every ACP failure after runtime creation with an error result
and one sandbox.startup span closure.
- Close the ACP runtime and remove warm entries after every pre-turn
failure.
- Run all teardown steps, record teardown errors, release staging leases
in finally, and prevent duplicate teardown.
- Dispose staged runtimes after seam failures and remove borrowed staged
entries with identity guards.
- Add fail-open workspace sync-back teardown for Claude and Gemini ACP
adapters.
- Isolate lease release errors and add bounded retry sweeps for stranded
pending_cleanup leases.
- Atomically claim pending_cleanup retries and clamp attempt readers to
keep the five-attempt bound.
- Default absent provider reusableLeases values to false and align the
fake provider with its runtime declaration.
- Add regression tests for engine, adapter, server, and shared
environment behavior.

## Verification

- [x] `npx vitest run
packages/adapter-utils/src/acpx-engine/execute.test.ts` — 124 tests
passed.
- [x] `npx vitest run
packages/adapters/codex-local/src/server/acp.test.ts
packages/adapters/claude-local/src/server/acp.test.ts
packages/adapters/gemini-local/src/server/acp.test.ts` — 61 tests
passed.
- [x] `npx vitest run server/src/__tests__/environment-runtime.test.ts
server/src/__tests__/heartbeat-pending-cleanup-sweep.test.ts
server/src/__tests__/reusable-leases-default.test.ts
server/src/__tests__/environment-routes.test.ts
packages/shared/src/environment-support.test.ts` — passed.
- [x] All listed suites ran from the repository root.
- [x] GitHub CI completed successfully for
`cfc349c9f232711433897915112a1c52c0e462ca`.
- [x] Greptile completed with a 5/5 confidence score and no blocking
finding.

## Risks

The engine changes affect failure settlement and teardown order across
ACP runs. The server changes add retry state to existing lease metadata
without a schema migration. The adapter changes restore workspaces after
sandbox execution. Regression tests cover the changed paths. GitHub CI
and Greptile passed for the current head.

> For core feature work, check [`ROADMAP.md`](ROADMAP.md) first and
discuss it in `#dev` before opening the PR. This change fixes runtime
reliability and does not duplicate a roadmap feature.

## Model Used

OpenAI GPT-5 Codex. The model used tool-based repository inspection,
GitHub operations, and code review support. The runtime does not expose
a context-window value.

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have searched GitHub for duplicate or related PRs and linked
them above
- [x] I have either (a) linked existing issues with `Fixes: #` / `Closes
#` / `Refs #` OR (b) described the issue in-PR following the relevant
issue template
- [x] I have not referenced internal/instance-local Paperclip issues or
links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip`
URLs)
- [x] My branch name describes the change (for example, `docs/...` or
`fix/...`) and contains no internal Paperclip ticket id or
instance-derived details
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [x] All Paperclip CI gates are green
- [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups
- [x] I will address all Greptile and reviewer comments before
requesting merge

---------

Co-authored-by: Paperclip <noreply@paperclip.ing>
2026-08-15 18:52:08 -07:00
Nicky LeachandPaperclip bc9f70f54c fix(plugin-daytona): bound the sandbox liveness calls with a per-call timeout (#11408)
## Thinking Path

> - Paperclip is the open source app people use to manage AI agents for
work
> - Sandbox provider plugins run agent work in remote execution
environments
> - The Daytona sandbox liveness read can stay pending when the
connection stops responding
> - A pending read blocks the plugin until a broad host-to-worker limit
expires
> - This pull request adds bounded deadlines to Daytona liveness calls
and clears stale handles
> - The benefit is a fast and clear error when a Daytona connection
stops responding

## Linked Issues or Issue Description

Refs #11341

**What happened?**

The Daytona sandbox liveness read had no per-call timeout. A silent
connection failure left the read pending until the broad host-to-worker
RPC limit expired.

**Expected behavior**

The plugin should stop a liveness call within a defined limit and report
a clear timeout error.

**Steps to reproduce**

1. Create a Daytona sandbox handle.
2. Make the cached handle freshness read never resolve.
3. Run the next sandbox operation.
4. Observe that the operation waits for the outer RPC limit without a
liveness timeout.

**Paperclip version or commit**

`master` before this change.

**Deployment mode**

Any deployment mode that uses the Daytona sandbox provider.

## What Changed

- Add `withLivenessTimeout` with timer cleanup and
`SandboxLivenessTimeoutError`.
- Bound `refreshData` with configurable `livenessTimeoutMs`, which
defaults to 30000 milliseconds.
- Bound sandbox start and recovery calls with the SDK timeout plus a
5000 millisecond margin.
- Reject `livenessTimeoutMs` values above 86400000 milliseconds and
document the setting.
- Evict a cached handle after a failed freshness refresh so the next
operation fetches a new handle.
- Add a test for a never-resolving freshness refresh and the
cached-handle eviction.

## Verification

- Run the Daytona plugin test suite with its package Vitest
configuration.
- Confirm that 150 of 150 tests pass.
- Confirm that the new test reports a bounded timeout and a fresh handle
on the next operation.
- Confirm that GitHub Actions reports green status checks after the pull
request starts.

## Risks

This change adds an early timeout only to Daytona liveness calls. A
value of 0 or less disables the extra bound. The default leaves normal
SDK calls within their expected time limit. The main risk is a timeout
value that is too short for a slow but healthy connection.

## Model Used

OpenAI Codex, GPT-5. The model used tool calls and code execution. The
model supplied the PR handoff and did not author the code in this pull
request.

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have searched GitHub for duplicate or related PRs and linked
them above
- [x] I have either (a) linked existing issues with `Fixes: #` / `Closes
#` / `Refs #` OR (b) described the issue in-PR following the relevant
issue template
- [x] I have not referenced internal/instance-local Paperclip issues or
links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip`
URLs)
- [x] My branch name describes the change (e.g. `docs/...`, `fix/...`)
and contains no internal Paperclip ticket id or instance-derived details
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [x] All Paperclip CI gates are green
- [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups
- [x] I will address all Greptile and reviewer comments before
requesting merge

---------

Co-authored-by: Paperclip <noreply@paperclip.ing>
2026-08-14 22:35:06 -07:00
Nicky LeachandPaperclip fdb9a4880d fix(security): route paperclipai CLI guidance through safe npx form (CWE-78) (#11400)
## Thinking Path

> - Paperclip is the open source app people use to manage AI agents for
work
> - Paperclip provides CLI commands and guidance for operators and
agents
> - The `pnpm paperclipai` script can pass argument values through a
shell
> - Shell re-parsing can execute command substitutions inside quoted
values
> - This pull request routes guidance through inert-argv `npx
paperclipai` commands and adds regression coverage
> - The benefit is safer operator guidance across documentation and
runtime hints

## Linked Issues or Issue Description

This pull request fixes a command-injection-class defect in Paperclip
CLI guidance.

**What happened?**

The `pnpm paperclipai <sub> --flag "$VALUE"` form can re-parse argument
values through a shell. A command substitution inside a quoted value can
execute on the host.

**Expected behavior**

Paperclip guidance must pass CLI values as inert argument values.
Host-derived values must not appear in copyable commands.

**Steps to reproduce**

1. Run a Paperclip guidance command that uses the `pnpm paperclipai`
script.
2. Provide a quoted value that contains a command substitution.
3. Observe that the shell can evaluate the substitution before the CLI
starts.
4. Compare the result with the `npx paperclipai` form.

**Paperclip version or commit**

`5670984b75d109950c968542a0111ebb6967f4da`

**Deployment mode**

All deployment modes that show or use the affected CLI guidance.

**Installation method**

Built from source and installed CLI guidance.

**Agent adapter(s) involved**

Not adapter-specific (core bug).

**Database mode**

Not database-related.

**Access context**

Both.

**Additional context**

The earlier merged PR
[#11343](https://github.com/paperclipai/paperclip/pull/11343) used the
unsafe `pnpm exec paperclipai` form. This fresh PR replaces that
guidance with the safe `npx paperclipai` form.

## What Changed

- Standardize documentation and runtime hints on `npx paperclipai`.
- Remove the broken `pnpm exec paperclipai` guidance.
- Use a static `<host>` placeholder in private-hostname guidance.
- Add regression tests for unsafe forms, continued lines, static hosts,
and offline guidance.

## Verification

- `git diff --check
origin/master...origin/fix/paperclipai-cli-npx-safe-invocation` passes.
- The branch adds `server/src/__tests__/cli-invocation-safety.test.ts`
and updates private-hostname tests.
- CI must run the new tests, typecheck, lint, and build checks.
- Local Vitest execution was not available because this worktree has no
installed Vitest binary.

## Risks

- The change affects operator and agent documentation text.
- The runtime hints now show `<host>` instead of a request-derived host
value.
- No database schema or migration changes exist.
- CI will detect any missed unsafe invocation or type error.

## Model Used

OpenAI GPT-5, exact model ID `gpt-5`, with tool use and code-review
assistance. The model used repository inspection, Git operations, and PR
preparation.

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have searched GitHub for duplicate or related PRs and linked
them above
- [x] I have either (a) linked existing issues with `Fixes: #` / `Closes
#` / `Refs #` OR (b) described the issue in-PR following the relevant
issue template
- [x] I have not referenced internal/instance-local Paperclip issues or
links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip`
URLs)
- [x] My branch name describes the change (e.g. `docs/...`, `fix/...`)
and contains no internal Paperclip ticket id or instance-derived details
- [x] CI ran the test suites and they pass; local test execution was
unavailable in this worktree
- [x] I have added or updated tests where applicable
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [x] All Paperclip CI gates are green
- [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups
- [x] I addressed all Greptile and reviewer comments before requesting
merge

---------

Co-authored-by: Paperclip <noreply@paperclip.ing>
2026-08-14 22:11:16 -07:00
Nicky LeachandPaperclip ed8075b535 fix(adapter-utils): order stdin file writes in the sandbox process-session bridge (#11406)
## Thinking Path

> - Paperclip is the open source app people use to manage AI agents for
work
> - Agent adapters can run through a sandbox process-session bridge
> - The bridge writes streamed standard input to files before the remote
process reads them
> - Concurrent file writes can make a later chunk visible before an
earlier chunk
> - The remote process can then parse a tail fragment and wait forever
for the missing head
> - This pull request serializes host writes and makes an unexpected
file gap a loud error
> - The benefit is ordered input with a bounded failure path for sandbox
ACP sessions

## Linked Issues or Issue Description

No public GitHub issue exists for this change. The description below
follows `.github/ISSUE_TEMPLATE/bug_report.yml`.

**What happened?**

A sandbox ACP process-session bridge could stall after its handshake
when a run sent a large prompt. The host sent one un-awaited file write
for each standard input chunk. A small later chunk could finish before a
large earlier chunk. The remote poller then sent the tail bytes first.
The agent parser raised an error on the tail fragment, and the head
bytes stayed buffered without a newline.

**Expected behavior**

The bridge must expose standard input files in sequence. The remote
poller must report a clear error when an earlier file remains missing
beyond the retry budget.

**Steps to reproduce**

1. Start an ACP session through a sandbox process-session bridge.
2. Send a prompt that produces multiple standard input file chunks.
3. Delay finalization of an earlier chunk while a later chunk completes.
4. Observe that the remote parser can receive the later chunk first and
the session can stop without a clear error.

**Paperclip version or commit**

The change targets the current `master` branch at the submitted commit.

**Deployment mode**

The bug affects sandbox execution.

**Agent adapter(s) involved**

The failure affects the ACP process-session bridge.

**Database mode**

Not database-related.

**Additional context**

The fix keeps the existing per-file atomic write behavior. It adds
ordering at the host write boundary and a bounded ordering check in the
shared wrapper poll tail.

## What Changed

- Add a per-session promise chain for host standard input file writes.
- Keep a failed write from blocking later chain entries.
- Track the next expected sequence number in the shared wrapper poll
tail.
- Hold later files while an earlier file is missing within the existing
retry budget.
- Emit a loud error and advance after the retry budget expires.
- Add regression tests for host ordering, gap holding, and the loud
error path.

## Verification

- `npx vitest run
packages/adapter-utils/src/execution-target-stdin-race.test.ts` — 9
tests passed.
- `npx vitest run
packages/adapter-utils/src/execution-target-sandbox.test.ts` — 43 tests
passed.
- `pnpm --filter @paperclipai/adapter-utils typecheck` — clean.
- With the source fix reverted, the 3 new tests fail and the 6 original
tests pass.
- CI must pass on the pull request before merge.

## Risks

Low risk.

- The host now serializes writes for each session, which can reduce
write parallelism.
- A failed write still emits one error and destroys the socket, as
before.
- The wrapper can emit a loud error after the existing retry budget when
a file gap persists.
- The change does not alter the atomic per-file write behavior.

## Model Used

OpenAI GPT-5, model ID `gpt-5`, with tool use and code execution. The
context window and internal reasoning details are not disclosed.

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have searched GitHub for duplicate or related PRs and linked
them above
- [x] I have either (a) linked existing issues with `Fixes: #` / `Closes
#` / `Refs #` OR (b) described the issue in-PR following the relevant
issue template
- [x] I have not referenced internal/instance-local Paperclip issues or
links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip`
URLs)
- [x] My branch name describes the change (e.g. `docs/...`, `fix/...`)
and contains no internal Paperclip ticket id or instance-derived details
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [x] All Paperclip CI gates are green
- [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups
- [x] I will address all Greptile and reviewer comments before
requesting merge

---------

Co-authored-by: Paperclip <noreply@paperclip.ing>
2026-08-14 18:45:31 -07:00
Nicky LeachandPaperclip 6f26f2a450 fix(adapter-utils): add per-iteration timeout and watchdog to the sandbox callback bridge poll loop (#11341)
## Thinking Path

> - Paperclip runs AI agents through adapters and sandboxed execution
paths
> - The sandbox callback bridge carries file requests between the host
and a sandbox
> - The poll loop waited forever when a sandbox call stopped responding
> - A permanent wait stranded queued requests and hid the run failure
> - This pull request adds bounded timeouts, abort handling, recovery
backstops, and trace reporting
> - The benefit is prompt request failure, safe mutation outcomes,
run-level error reporting, and trace visibility

## Linked Issues or Issue Description

**What happened?**

The sandbox callback bridge could wait forever when a client call
stopped responding without a rejection.

**Expected behavior**

The bridge should fail queued requests and report a run-level error when
the sandbox channel stops responding.

**Steps to reproduce**

1. Start a sandbox callback bridge.
2. Queue a request.
3. Make the sandbox call stop responding.
4. Observe that the request does not receive a failure response.

**Paperclip version or commit**

Commit `edc4f71b460c600f97cf44cb486d5cac72ca2db9`.

**Deployment mode**

Built from source.

**Installation method**

Built from source with pnpm.

**Agent adapter(s) involved**

Custom or external sandbox callback bridge.

**Database mode**

Not database-related.

## What Changed

- Add a per-iteration timeout for `listJsonFiles` and
`processRequestFile`.
- Add a watchdog that fails pending requests when the loop makes no
progress.
- Abort a hung handler and use a non-retryable 504 backstop when its
outcome can be indeterminate.
- Retry recovery writes and keep queued requests when a recovery write
fails.
- Forward the indeterminate-outcome header through the execution target.
- Record worker failures through the
`sandbox.callbackBridge.workerFailed` trace span.
- Add tests for timeout, watchdog, recovery, mutation safety, header
forwarding, and fast-request behavior.

## Verification

- Run `pnpm exec vitest run
packages/adapter-utils/src/sandbox-callback-bridge.test.ts
packages/adapter-utils/src/execution-target-sandbox.test.ts`.
- Confirm that the PR test, typecheck, build, end-to-end, serialized
test, and security checks pass.
- Confirm that the current PR head is
`edc4f71b460c600f97cf44cb486d5cac72ca2db9`.
- Confirm that the PR changes four files: the callback bridge, its
tests, the execution target, and its tests.

## Risks

The default timeout can fail a slow but valid sandbox call. The defaults
remain configurable, and the iteration timeout stays below the sandbox
response deadline. A mutation that may have committed returns a
non-retryable 504 outcome so the caller does not apply it twice.

## Model Used

OpenAI Codex, GPT-5 current runtime, with extended reasoning and tool
use. The exact context window is not exposed by the runtime.

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have searched GitHub for duplicate or related PRs and linked
them above
- [x] I have either (a) linked existing issues with `Fixes: #` /
`Closes: #` / `Refs: #` OR (b) described the issue in-PR following the
relevant issue template
- [x] I have not referenced internal/instance-local Paperclip issues or
links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip`
URLs)
- [x] My branch name describes the change (e.g. `docs/...`, `fix/...`)
and contains no internal Paperclip ticket id or instance-derived details
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [x] All Paperclip CI gates are green
- [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups
- [x] I will address all Greptile and reviewer comments before
requesting merge

---------

Co-authored-by: Paperclip <noreply@paperclip.ing>
2026-08-14 18:26:52 -07:00
Nicky LeachandPaperclip 69027cbaae fix(workspaces): reopen archived git worktree for managed_checkout projects (#11395)
## Thinking Path

> - Paperclip is the open source app people use to manage AI agents for
work
> - Execution workspaces give agent tasks isolated Git worktrees
> - Archived isolated workspaces must reopen against a live project
checkout
> - A managed_checkout project has no project workspace directory in its
row
> - The reopen path used the removed archived worktree as the Git
working directory
> - This pull request resolves the live managed checkout and reports a
clear error when it is unavailable
> - The benefit is reliable workspace reopen behavior after archive
cleanup

## Linked Issues or Issue Description

Related public pull request:
[#6164](https://github.com/paperclipai/paperclip/pull/6164) clears
archive state during un-archive. This pull request fixes the separate
reopen failure that occurs after archive cleanup.

**What happened?**

An archived isolated `git_worktree` workspace under a `managed_checkout`
project failed to reopen after cleanup. The route attempted to run Git
in the removed archived worktree and returned a generic service error.

**Expected behavior**

The reopen path should use the live managed checkout as the Git base
directory and should return a clear error when that directory is
unavailable.

**Steps to reproduce**

1. Create a project with `managed_checkout` source control.
2. Create and archive an isolated `git_worktree` execution workspace.
3. Let archive cleanup remove the worktree.
4. Reopen the workspace for an issue.

**Paperclip version or commit**

`cab0c31dc61310106caef42ca244e9f7b0f19460`

**Deployment mode**

Local dev with the default embedded database.

**Agent adapter(s) involved**

Not adapter-specific. This issue affects core workspace handling.

## What Changed

- Resolve the live managed checkout when a managed project reopens an
archived Git worktree.
- Keep local-folder projects on their project workspace directory.
- Validate the Git base directory before `git rev-parse` and return a
scrubbed error.
- Add nine regression tests for workspace reopen behavior.

## Verification

- `server` TypeScript check passes with `tsc --noEmit`.
- `server/src/__tests__/execution-workspace-reopen.test.ts` passes with
9 tests.
- GitHub Actions must pass all required PR checks.

## Risks

Low risk. The change affects only archived isolated workspace reopen
behavior. It reuses the existing managed checkout and Git authentication
helpers. It adds no new credential path, endpoint, or telemetry.

## Model Used

OpenAI GPT-5 assisted with review and GitHub operations. The
implementation author supplied the code and test results.

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have searched GitHub for duplicate or related PRs and linked
them above
- [x] I have either (a) linked existing issues with `Fixes: #` /
`Closes: #` / `Refs: #` OR (b) described the issue in-PR following the
relevant issue template
- [x] I have not referenced internal/instance-local Paperclip issues or
links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip`
URLs)
- [x] My branch name describes the change (e.g. `docs/...`, `fix/...`)
and contains no internal Paperclip ticket id or instance-derived details
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [x] All Paperclip CI gates are green
- [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups
- [x] I will address all Greptile and reviewer comments before
requesting merge

---------

Co-authored-by: Paperclip <noreply@paperclip.ing>
2026-08-14 16:44:31 -07:00
Nicky LeachandPaperclip 5ca7b4c1fe fix(security): standardize paperclipai CLI guidance on safe npx path (#11343)
## Thinking Path

> - Paperclip is the open source app people use to manage AI agents for
work.
> - Paperclip provides CLI guidance to agents and operators through
documentation and runtime messages.
> - Content-bearing `pnpm paperclipai` examples send arguments through a
shell.
> - Shell evaluation can execute command substitutions in untrusted
argument content.
> - Runtime hostname guidance can also place request-derived content
inside a shell command.
> - This pull request uses `npx paperclipai` for content-bearing
guidance and uses a static hostname placeholder.
> - The benefit is safer copy-paste guidance for agents and operators.

## Linked Issues or Issue Description

**Issue type**
Incorrect information

**Where is the issue?**
CLI guidance in `doc/CLI.md`, `skills/paperclip/SKILL.md`,
documentation, and runtime-generated hints.

**What's wrong?**
Content-bearing `pnpm paperclipai` commands can pass argument text
through `/bin/sh`. Shell command substitution in an argument can execute
before the CLI receives the value.

**Suggested fix**
Use `npx paperclipai` for content-bearing commands. Use a static
`<host>` placeholder when runtime guidance displays the allowed-hostname
command.

## What Changed

- Replace content-bearing `pnpm paperclipai` examples with `npx
paperclipai` across the documentation and agent-facing guidance.
- Update runtime-generated CLI hints to use a static `<host>`
placeholder.
- Add safety notes to `doc/CLI.md` and `skills/paperclip/SKILL.md`.
- Add scans and regression tests for unsafe invocation and hostile
hostname headers.
- Keep fixed lifecycle commands and `pnpm --filter @paperclipai/*` build
commands unchanged.

## Verification

- Run `tsc --noEmit` for the changed server files.
- Run `cli-invocation-safety.test.ts`.
- Run `private-hostname-guard.test.ts`.
- Confirm that hostile hostname headers do not enter shown shell
commands.
- Confirm that the three commits contain the required Paperclip
co-author trailer.

## Risks

- This change updates documentation and diagnostic text across many
surfaces.
- Fixed lifecycle and setup commands remain unchanged.
- The tests fail if content-bearing `pnpm paperclipai` guidance returns.
- The change does not alter the CLI argument parser.

## Model Used

OpenAI Codex, GPT-5, tool use, code execution, and repository review
assistance.

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have searched GitHub for duplicate or related PRs and linked
them above
- [x] I have either (a) linked existing issues with `Fixes: #` / `Closes
#` / `Refs #` OR (b) described the issue in-PR following the relevant
issue template
- [x] I have not referenced internal/instance-local Paperclip issues or
links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip`
URLs)
- [x] My branch name describes the change (e.g. `docs/...`, `fix/...`)
and contains no internal Paperclip ticket id or instance-derived details
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [x] All Paperclip CI gates are green
- [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups
- [x] I will address all Greptile and reviewer comments before
requesting merge

---------

Co-authored-by: Paperclip <noreply@paperclip.ing>
2026-08-13 16:43:21 -07:00
Nicky LeachandPaperclip 05d58cd884 fix(tool-gateway): keep unsigned ask-first requests out of the review queue without cancelling them (#11338)
## Thinking Path

> - Paperclip is the open source app people use to manage AI agents for
work
> - The tool gateway creates approval requests and the review queue
reads them
> - The gateway creates a request row before it adds the signature
> - A review-queue read can see the row during that short unsigned state
> - The old read path cancels the unsigned row, so approval returns `409
action_not_pending`
> - This pull request hides unsigned in-flight rows and keeps them
pending until signing finishes
> - The benefit is that approval succeeds while invalid signed requests
remain cancelled

## Linked Issues or Issue Description

**What happened?**

A review-queue read cancelled a pending tool action request when the
request had no signature yet. The next approval call returned `409
action_not_pending`.

**Expected behavior**

The review queue must hide an unsigned in-flight request and keep its
state as `pending`. A request with an invalid signature must remain
cancelled.

**Steps to reproduce**

1. Create a require-approval tool action request.
2. Read the review queue while the request signature is still null.
3. Approve the request after the creator adds the signature.
4. Observe that the old code cancels the request and the approval call
fails.

**Paperclip version or commit**

Commit `720aa0a494bbaa1711bc7a3d795f810765915bfe`.

**Deployment mode**

Local dev with the embedded PGlite database.

**Installation method**

Built from source with pnpm.

**Agent adapter(s) involved**

Not adapter-specific. This is a core tool access service bug.

**Database mode**

Embedded PGlite.

**Access context**

Board and agent tool approval flow.

## What Changed

- Keep a pending request with a null signature out of
`listActionRequests` results.
- Cancel a request when its non-null signature fails verification.
- Add a permanent regression test for the unsigned request transition.
- Update the contract test for unsigned and invalid-signature requests.

## Verification

- Run the tool access service, tool gateway service, tool gateway, and
tool access policy service tests.
- Confirm 227 tests pass.
- Run the `@mcp-runnable` Playwright end-to-end suite in CI.
- Run the US-9 loop 30 times in CI.

## Risks

The change alters review-queue filtering for unsigned requests. A null
signature now means that signing remains in progress. Invalid signed
requests keep the existing cancellation behavior. The change has no
database migration.

## Model Used

OpenAI Codex, GPT-5, with tool use and code execution. The model
reviewed the handoff, repository rules, and pull request state. The
implementation author supplied the code and tests.

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have searched GitHub for duplicate or related PRs and linked
them above
- [x] I have either (a) linked existing issues with `Fixes: #` /
`Closes: #` / `Refs: #` OR (b) described the issue in-PR following the
relevant issue template
- [x] I have not referenced internal/instance-local Paperclip issues or
links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip`
URLs)
- [x] My branch name describes the change (e.g. `docs/...`, `fix/...`)
and contains no internal Paperclip ticket id or instance-derived details
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [x] I have updated relevant documentation to reflect my changes
- [x] All Paperclip CI gates are green
- [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups
- [x] I will address all Greptile and reviewer comments before
requesting merge

---------

Co-authored-by: Paperclip <noreply@paperclip.ing>
2026-08-13 16:15:12 -07:00
Nicky LeachandPaperclip 031003c5e1 fix(ui): search parent-issue picker on the server (#11334)
## Thinking Path

> - Paperclip is the open source app people use to manage AI agents for
work
> - The board UI lets an operator choose a parent issue for an issue
> - The parent picker loads a priority-first page and filters that page
in the browser
> - A medium-priority or low-priority issue past the page limit never
enters the picker
> - This pull request sends typed parent-picker text to the server and
keeps the picker exclusions
> - The benefit is that the operator can select valid parent issues
beyond the default page

## Linked Issues or Issue Description

This pull request supersedes
[#6193](https://github.com/paperclipai/paperclip/pull/6193), whose old
file path no longer matches the current component tree.

**What happened?**

The parent picker fetched one default issue page and filtered it in the
browser. The default page sorts by priority and caps the result at 500
issues. Valid medium-priority and low-priority parent issues beyond that
page stayed hidden.

**Expected behavior**

The parent picker must search the server when the operator types text.
It must show matching issues beyond the default page while it keeps the
current issue and descendant exclusions.

**Steps to reproduce**

1. Open an issue in a company with more than 500 issues.
2. Open the parent picker and type the name of a medium-priority or
low-priority issue beyond the default page.
3. Observe that the picker does not show the matching issue.

**Paperclip version or commit**

Commit `c6965bd0237fd9536b41f1495e2a4bb252afcde7`.

**Deployment mode**

Local dev (`pnpm dev`).

## What Changed

- Send parent-picker searches to the issue list endpoint with `q` and a
bounded `limit` of 50.
- Keep the empty-search list, cycle exclusions, and current sort
behavior.
- Add a component test for a low-priority match hidden by the default
page.

## Verification

- Run `pnpm vitest run ui/src/components/IssueProperties.test.tsx`.
- Confirm that all 53 tests pass.
- Confirm that the new test checks `{ q, limit: 50 }` and the matching
issue.

## Risks

- Low risk. The change affects only parent-picker search requests.
- The server search uses the existing issue list query and does not
change stored data.

## Model Used

Codex, GPT-5, with tool use and code execution. The model assisted with
the change and test.

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have searched GitHub for duplicate or related PRs and linked
them above
- [x] I have either (a) linked existing issues with `Fixes: #` / `Closes
#` / `Refs #` OR (b) described the issue in-PR following the relevant
issue template
- [x] I have not referenced internal/instance-local Paperclip issues or
links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip`
URLs)
- [x] My branch name describes the change (e.g. `docs/...`, `fix/...`)
and contains no internal Paperclip ticket id or instance-derived details
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [x] All Paperclip CI gates are green
- [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups
- [x] I will address all Greptile and reviewer comments before
requesting merge

Co-authored-by: Paperclip <noreply@paperclip.ing>
2026-08-13 12:18:49 -07:00
Nicky LeachandPaperclip 44694328a3 fix(issues): make DELETE /api/issues/:id succeed for issues with dependents (#11331)
## Thinking Path

> - Paperclip is the open source app people use to manage AI agents for
work
> - The server provides issue APIs and the database stores issue child
rows
> - The issue delete endpoint removes the parent issue before dependent
rows
> - Several issue foreign keys had no delete policy, so PostgreSQL
returned a foreign-key error
> - This pull request adds safe cascade and set-null policies and a
clear conflict response
> - The benefit is reliable issue deletion with a useful error when a
restricted audit row still blocks deletion

## Linked Issues or Issue Description

Fixes #7728
Fixes #4660
Fixes #7991
Fixes #4627
Fixes #5086

**What happened?**

`DELETE /api/issues/:id` returned HTTP 500 when dependent comments,
thread interactions, read states, inbox archives, feedback votes, or
ledger rows referenced the issue. The database raised SQLSTATE 23503
because several foreign keys had no delete policy.

**Expected behavior**

The endpoint must remove dependent rows that have no meaning without the
issue. It must keep ledger rows with a null issue reference. It must
return HTTP 409 when a restricted decision audit row still references
the issue.

**Steps to reproduce**

1. Create an issue.
2. Add a comment or thread interaction that references the issue.
3. Send `DELETE /api/issues/:id`.
4. Observe the HTTP 500 response.

**Paperclip version or commit**

Commit `1f8f456f8340823fe2bd891ae8933d942f190b7b`.

**Deployment mode**

Local dev with embedded PGlite or external PostgreSQL.

## What Changed

- Add `CASCADE` to five issue child foreign keys.
- Add `SET NULL` to the finance and cost event issue foreign keys.
- Keep decision audit references restricted.
- Map SQLSTATE 23503 from the issue delete service to HTTP 409.
- Add migration 0217 for the seven changed tables.
- Add regression tests for cascade deletion and restricted decision
references.

## Verification

- Run `pnpm --filter @paperclipai/db typecheck`.
- Run `pnpm --filter @paperclipai/server typecheck`.
- Run `npx vitest run src/__tests__/issue-remove-cascade.test.ts` from
`server/`.
- The regression test applies migration 0217 to a fresh embedded
PostgreSQL database.

## Risks

- Migration 0217 changes only seven foreign keys that reference
`issues.id`.
- Cascade deletion removes child rows that cannot exist without the
parent issue.
- Set-null preserves finance and cost ledger rows.
- Decision audit rows remain protected, so the endpoint can return HTTP
409.

## Model Used

Codex, based on GPT-5, with tool use and code-review support. The
implementation author used an AI coding agent. This PR handoff uses the
same model family to validate the commit and manage the pull request.

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have searched GitHub for duplicate or related PRs and linked
them above
- [x] I have either (a) linked existing issues with `Fixes: #` /
`Closes: #` / `Refs: #` OR (b) described the issue in-PR following the
relevant issue template
- [x] I have not referenced internal/instance-local Paperclip issues or
links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip`
URLs)
- [x] My branch name describes the change (e.g. `docs/...`, `fix/...`)
and contains no internal Paperclip ticket id or instance-derived details
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [ ] All Paperclip CI gates are green
- [ ] Greptile is 5/5 with no open P2s, recommendations, or follow-ups
- [ ] I will address all Greptile and reviewer comments before
requesting merge

---------

Co-authored-by: Paperclip <noreply@paperclip.ing>
2026-08-13 12:02:15 -07:00
Nicky LeachandPaperclip 68ea3fcf53 test(ui): stabilize annotation popover submit-shortcut test (#11330)
## Thinking Path

> - Paperclip is the open source app people use to manage AI agents for
work
> - The board UI lets users add comments to document annotations
> - The annotation popover test submits a comment with a keyboard
shortcut
> - React can delay the controlled textarea update under load
> - The test can then send the shortcut before the handler sees the
typed value
> - This pull request waits for the value update before it sends the
shortcut
> - The benefit is a stable test that checks the real submit path

## Linked Issues or Issue Description

**What happened?**

The annotation popover test typed a comment and sent the submit shortcut
in one synchronous step. Under load, React sometimes had not committed
the typed value when the handler ran. The mutation then ran zero times.

**Expected behavior**

The test should wait for the controlled textarea value before it sends
the submit shortcut. The handler should read the comment and call the
create mutation.

**Steps to reproduce**

1. Run `npx vitest run
src/components/DocumentAnnotationPopover.test.tsx` from `ui/`.
2. Repeat the test under system load.
3. Observe intermittent failures where the create mutation runs zero
times.

**Paperclip version or commit**

The test runs against commit `9a08def5752bb13e4cbcb304c6295e175c92db3c`.

**Deployment mode**

This change affects the UI test suite only. It does not depend on a
deployment mode.

## What Changed

- Wait for the Comment button to enable after the controlled value
updates.
- Send the submit shortcut after React commits the typed value.
- Keep the test focused on the compose-mode submit path.

## Verification

- The author ran `npx vitest run
src/components/DocumentAnnotationPopover.test.tsx` from `ui/` with 3
tests passing.
- The current handoff worktree could not repeat the test because its
installed dependencies lack `react/jsx-runtime`.
- GitHub Actions will run the required project checks.

## Risks

Low risk. The change updates one UI test file and does not change
product code.

## Model Used

OpenAI Codex, GPT-5. The model used tool calls and code execution. The
context window size was not provided.

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have searched GitHub for duplicate or related PRs and linked
them above
- [x] I have either (a) linked existing issues with `Fixes: #` /
`Closes: #` / `Refs: #` OR (b) described the issue in-PR following the
relevant issue template
- [x] I have not referenced internal/instance-local Paperclip issues or
links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip`
URLs)
- [x] My branch name describes the change (e.g. `docs/...`, `fix/...`)
and contains no internal Paperclip ticket id or instance-derived details
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [x] All Paperclip CI gates are green
- [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups
- [x] I will address all Greptile and reviewer comments before
requesting merge

Co-authored-by: Paperclip <noreply@paperclip.ing>
2026-08-13 11:44:29 -07:00
Nicky LeachandPaperclip d0d242e843 feat(server): reopen an archived isolated execution workspace in place (#11322)
## Thinking Path

> - Paperclip is the open source app people use to manage AI agents for
work
> - Issue execution uses isolated workspaces that hold the issue
worktree
> - A terminal issue can leave its isolated workspace archived and
unable to resume
> - The existing closed-workspace guards returned a conflict and gave
the user no self-serve recovery
> - This pull request reopens the same isolated workspace row and
rebuilds its worktree
> - The benefit is that resume, checkout, and comment actions can
continue without a new workspace row

## Linked Issues or Issue Description

**Problem or motivation**

A terminal issue can point to an archived isolated execution workspace.
Resume, checkout, and comment actions then stop with a conflict.

**What happened?**

A terminal issue kept its issue-to-workspace link after the isolated
workspace reached a closed status. The guarded actions returned HTTP 409
instead of restoring access.

**Expected behavior**

The next authorized resume, checkout, or comment action reopens the same
isolated workspace row. The action rebuilds the worktree and then
continues.

**Steps to reproduce**

1. Create an issue that uses an isolated execution workspace.
2. Move the issue to a terminal state and let the workspace archive.
3. Try to resume the issue or add a comment.
4. Observe the closed-workspace conflict.

**Paperclip version or commit**

e6e79f458e

**Deployment mode**

Built from source with pnpm.

**Proposed solution**

Reopen the closed isolated workspace in place. Rebuild the worktree
before the route reports success.

**Alternatives considered**

Create a new workspace row. This would require repointing the issue link
and would not preserve access for issues that share the original row.

**Roadmap alignment**

ROADMAP.md has no matching reopen item.

## What Changed

- Reopen closed isolated workspace rows in place and rebuild their
worktrees.
- Use the reopen path from resume, checkout, and comment guards.
- Return a clear error when the rebuild fails and keep the workspace
closed.
- Fence terminal reaping and archive cleanup while a reopen is in
flight.
- Update the comment composer to allow the next action to reopen the
workspace.
- Add service and route tests for reopen, scope, failure, and lifecycle
races.

## Verification

- Server TypeScript check passes with the tsc --noEmit command.
- UI TypeScript check passes with the tsc --noEmit command.
- Seventy-two server tests pass across the affected test files.
- The isolated worktree UI test suite has a dependency mismatch and
fails before tests run with the error TypeError: act is not a function.
- CI confirms the UI test job after a clean dependency install.

## Risks

The reopen path changes behavior for closed isolated workspaces. A
rebuild failure returns an error and keeps the row closed. Lifecycle
locks and generation checks protect the worktree from stale cleanup. The
UI test mismatch needs CI confirmation.

## Model Used

OpenAI Codex, GPT-5, with tool use and code review assistance. The
runtime did not provide the context window size.

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have searched GitHub for duplicate or related PRs and linked
them above
- [x] I have either (a) linked existing issues with Fixes: # / Closes #
/ Refs # OR (b) described the issue in-PR following the relevant issue
template
- [x] I have not referenced internal/instance-local Paperclip issues or
links (only public GitHub references)
- [x] My branch name describes the change and contains no internal
Paperclip ticket id or instance-derived details
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [x] All Paperclip CI gates are green
- [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups
- [x] I will address all Greptile and reviewer comments before
requesting merge

---------

Co-authored-by: Paperclip <noreply@paperclip.ing>
2026-08-13 07:44:19 -07:00
Nicky LeachandClaude Opus 4.8 04bf7a6ab5 feat(observability): instrument stage.sync host steps and home the agent process span (#11301)
## Thinking Path

> - Paperclip is the open source app people use to manage AI agents for
work.
> - It runs each agent in a remote sandbox and emits OpenTelemetry spans
for the sandbox bring-up and the run.
> - A real trace showed two gaps. `stage.sync` had about 3 seconds of
unattributed host work before its `pack` span. The persistent agent
process showed a `sandbox.exec` span that outlived its parent by about
50 seconds.
> - The gaps hide real cost and make the trace read as a sequencing bug,
so an operator cannot see where startup time goes.
> - This pull request wraps the two pre-`pack` host steps in their own
spans. It also homes the long-lived process in a run-scoped
`sandbox.agentProcess` span.
> - The benefit is that startup time is fully attributed and the process
reads as a resource that overlaps the turn, not a child that outlives
its parent.

## Linked Issues or Issue Description

No public issue exists. This is an enhancement to existing telemetry. It
is described inline below, following
`.github/ISSUE_TEMPLATE/enhancement.yml`. Prior related work: the merged
PR #10999 added the run-time wrapper spans and the telemetry
data-contract section this PR extends.

**What existing behavior does this improve?**

The sandbox bring-up and run OpenTelemetry trace. It closes two
attribution gaps in that trace.

**Subsystem affected**

Observability for sandbox execution. The code lives in
`packages/adapter-utils`. The span contract lives in
`packages/shared/src/telemetry`.

**Current behavior**

`stage.sync` opens a `pack` span, but the git enumeration and the
baseline content-hash walk that run before `pack` have no span, so about
3 seconds read as a gap. On the streamed process-session path the agent
process launches fire-and-forget inside the ~2.3 second
`bridge.process-session` bring-up step, so its `sandbox.exec` span
parents to that step and then runs about 50 seconds. The child dangles
past its parent and overlaps `agent.turn`.

**Proposed behavior**

Wrap the two pre-`pack` host operations in `snapshot.git` and
`snapshot.baseline` spans under `stage.sync`. Wrap the streamed launch
in a run-scoped `sandbox.agentProcess` span that parents to the live run
root (`task.run` at launch).

**Reason and benefit**

Startup time is fully attributed. The long-lived process reads as a
resource that overlaps the sibling `agent.turn`, not a mis-parented
child.

**Breaking changes**

None. The spans are opt-in and export only when an OTLP endpoint is
configured. The span seam is a no-op when no runner is injected. No
first-party telemetry event changes.

## What Changed

- `sandbox-managed-runtime.ts`: add `snapshot.git` and
`snapshot.baseline` spans around the git enumeration and the baseline
content-hash walk, nested under `stage.sync`, through a shared
`runStepSpan` helper that `pack` now also uses.
- `execution-target.ts`: wrap the fire-and-forget streamed launch in a
run-rooted `sandbox.agentProcess` span, so it parents to the live run
root and holds the inner `sandbox.exec`. The `.then`/`.catch` chain
became try/catch inside the span callback, with identical
frame-ingestion behavior.
- `packages/shared/src/telemetry/README.md`: update the span table and
the parenting prose. Add `snapshot.git`, `snapshot.baseline`, `pack`,
and `sandbox.agentProcess`, and document the intended
`sandbox.agentProcess` / `agent.turn` overlap.
- Tests: update the executor span-tree test (`childNames` and parent
assertions), update the `sandbox-managed-runtime` span-set and nesting
tests, and add two `execution-target-sandbox` tests (the launch opens
`sandbox.agentProcess`; it parents to the run root, not the bring-up
step).

## Verification

- Run `npx vitest run` on the three affected test files. Result: 174
tests pass. This includes the updated executor span-tree test and the
new `sandbox.agentProcess` open and parenting tests.
- Run `tsc --noEmit` in `packages/adapter-utils`. Result: no errors in
the changed source or test files.
- The full 37-test streamed process-session suite passes unchanged. This
confirms the try/catch restructure preserves frame delivery and
exit/error behavior.
- Pre-existing and unrelated to this PR (present on `master`): `tsc`
errors in `execute.ts` / `execute.test.ts` /
`remote-spawn-smoke.test.ts` (`onAgentStderr` / `spawnCwd`), and a
`check:forbidden-tokens` failure from internal `PAP-###` ids in
`ui/src/components/IssueRecoveryActionCard.test.tsx`. This PR does not
touch those files, and its own diff is token-clean.

## Risks

Low. The change adds instrumentation on the opt-in span path and does
not change control flow on the default path. The one production
restructure is the streamed launch, which stays fire-and-forget, so
bring-up does not block on it. Only the streamed path gains
`sandbox.agentProcess`; the legacy poll path launches the process
detached and has no host-side long-lived span to home.

## Model Used

Anthropic Claude Opus 4.8 (`claude-opus-4-8`), about 200K-token context,
agentic tool use through Claude Code. The trace was reviewed through the
Honeycomb MCP. The code was written and tested with the model.

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have searched GitHub for duplicate or related PRs and linked
them above
- [x] I have either (a) linked existing issues with `Fixes: #` / `Closes
#` / `Refs #` OR (b) described the issue in-PR following the relevant
issue template
- [x] I have not referenced internal/instance-local Paperclip issues or
links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip`
URLs)
- [x] My branch name describes the change (e.g. `docs/...`, `fix/...`)
and contains no internal Paperclip ticket id or instance-derived details
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [x] All Paperclip CI gates are green
- [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups
- [x] I will address all Greptile and reviewer comments before
requesting merge

---------

Co-authored-by: Claude Opus 4.8 <noreply@anthropic.com>
2026-08-12 16:06:05 -07:00
e31951a17d feat: Claude agent setup-token login in a sandbox (#11286)
## Thinking Path

> - Paperclip is the open source app people use to manage AI agents for
work
> - Claude agents that run in a remote sandbox need a safe in-product
login path
> - The existing host login route cannot open a pseudo-terminal inside
that sandbox
> - The login flow must protect the browser code, the login URL, and the
OAuth token at every step
> - This pull request adds the parser, the runner, a Daytona
pseudo-terminal transport, and a guarded, owner-bound session route
behind an injectable transport
> - The route stays inert in the default build and fails closed until a
sandbox provider binds the live transport
> - The benefit is a company-scoped setup-token flow with one-time
secret delivery, redaction, and fail-closed transport checks, ready for
a later staged production rollout

## Linked Issues or Issue Description

**Agent or provider**

Claude Code setup-token login for sandbox agents.

**Why this adapter is useful**

Sandbox agents need a supported way to sign in without host credentials.
An authorized owner completes the browser step and receives the token
one time.

**How the agent is invoked**

When a sandbox provider binds the injectable transport, the server
starts `claude setup-token` through a sandbox pseudo-terminal, sends the
browser code to the matched prompt, and returns the token through the
guarded session route. The default build does not bind the transport. In
that state the start route fails closed with a fixed no-secret `503`. It
does not start a process and it does not hold a sandbox lease.

**Additional context**

The transport is injectable, so each sandbox provider binds its own
pseudo-terminal. This pull request adds the Daytona transport but does
not bind it in the production server. A production wiring needs a lease
manager, a live pseudo-terminal factory, a durable token store, and its
own security review. The route keeps secrets out of logs, activity
details, errors, telemetry, and non-owner responses.

## What Changed

- Add strict parsers for the setup-token URL, the prompt, and the
success token.
- Add a login runner that drives the `claude setup-token` command
through a pseudo-terminal.
- Add the Daytona pseudo-terminal transport and the sandbox plugin
wiring.
- Add a company-scoped, owner-bound login session service with rate
limits, a reaper, cleanup, and one-time token delivery.
- Add the guarded session routes at
`/agents/:id/setup-token-login-sessions/*` behind an injectable
transport. The routes become the live login path only when a provider
binds the transport.
- Keep the start route fail-closed in the default build. It returns a
fixed no-secret `503` and it does not bind `setupTokenLogin`.
- Keep the existing host route `POST /agents/:id/claude-login` in place.
This pull request does not replace it.
- Keep confidential responses behind a fail-closed TLS transport guard
with `Cache-Control: no-store`, and extend redaction for the new fields.
- Export the parser and the runner from the Claude local server entry,
and document the new session routes in the OpenAPI spec.

## Verification

- `pnpm --filter @paperclipai/server exec vitest run setup-token-route
setup-token-session`
- `pnpm --filter @paperclipai/adapter-claude-local exec vitest run`
- `pnpm --filter @paperclipai/server run typecheck`
- Confirm that the pull request checks pass on GitHub.

## Risks

- Low user-facing risk on merge. The default build does not bind the
transport, so the production start route stays fail-closed with a `503`.
The merge does not change the production login behavior.
- When a provider later binds the transport, the flow starts a live
sandbox process and holds a short-lived in-memory secret. Cleanup must
stop the child before it releases the sandbox lease.
- The transport guard fails closed when the deployment does not provide
a trusted TLS path. A wrong proxy allowlist can block a valid request.
- The production wiring is out of scope. It needs a lease manager, a
live pseudo-terminal factory, a durable token store, and its own
security review before the server binds `setupTokenLogin`.

## Model Used

Anthropic Claude Opus 4.8 assisted the implementation. It used extended
reasoning, code execution, repository tool use, and a 200,000-token
context window.

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have searched GitHub for duplicate or related PRs and linked
them above
- [x] I have either (a) linked existing issues with `Fixes: #` /
`Closes: #` / `Refs: #` OR (b) described the issue in-PR following the
relevant issue template
- [x] I have not referenced internal/instance-local Paperclip issues or
links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip`
URLs)
- [x] My branch name describes the change (e.g. `docs/...`, `fix/...`)
and contains no internal Paperclip ticket id or instance-derived details
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [x] I have updated relevant documentation to reflect my changes (the
OpenAPI spec covers the new session routes; no user-facing documentation
needs changes)
- [x] I have considered and documented any risks above
- [x] All Paperclip CI gates are green
- [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups
- [x] I will address all Greptile and reviewer comments before
requesting merge

---------

Co-authored-by: Paperclip <noreply@paperclip.ing>
Co-authored-by: Claude Opus 4.8 <noreply@anthropic.com>
2026-08-12 13:02:49 -07:00
Nicky LeachandPaperclip f1931d0e14 test(server): fix flaky workspace-busy retry-row read race (#11293)
## Thinking Path

> - Paperclip is the open source app people use to manage AI agents for
work
> - The server heartbeat system records each agent run and its retry
state
> - A workspace-busy deferral cancels one run before it inserts the
scheduled retry row
> - The test helper can return after the cancel write and before the
retry-row insert
> - A direct read can then return no row and fail a valid retry
assertion
> - This pull request makes presence reads wait for the retry row
> - The benefit is stable test coverage without a production behavior
change

## Linked Issues or Issue Description

Refs: #10806

**What happened?**

The workspace-busy test read the retry row after the first deferral
write. The helper returned before the scheduled-retry insert completed.
The read then returned no row and failed the retry assertions.

**Expected behavior**

The test must wait until the scheduled-retry row exists before it checks
retry-row fields. The production write order must stay unchanged.

**Steps to reproduce**

1. Add a 300 ms delay between the deferral writes.
2. Run `server/src/__tests__/heartbeat-workspace-busy.test.ts`.
3. Observe failures at retry-row presence checks.
4. Add the bounded polling helper.
5. Run the test file again and observe that all presence checks pass.

**Paperclip version or commit**

Commit `d9b6e8a6e62b9b56919fc9c52d294e8ac569f70f`.

**Deployment mode**

Local test run from source.

## What Changed

- Add `waitForRetryRun`, which polls for the retry row with a 10 second
timeout and a 50 millisecond interval.
- Use the helper at every test site that reads a retry row after
deferral.
- Keep direct reads at absence assertions.
- Keep production code unchanged.

## Verification

- Injected a temporary 300 millisecond delay between the two production
writes and reproduced the five presence-site failures.
- Applied the helper with the delay and passed the test file 15 out of
15 times.
- Removed the temporary production delay.
- Ran the changed test file 25 consecutive times with 0 failures.
- Ran TypeScript checks for the changed test file with no errors.

## Risks

Low risk. This pull request changes test code only. The helper has a
bounded timeout. Production behavior and retry-row assertions remain
unchanged.

## Model Used

OpenAI Codex, GPT-5, reasoning mode, tool use, and code execution. The
runtime does not expose the context window size.

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have searched GitHub for duplicate or related PRs and linked
them above
- [x] I have either (a) linked existing issues with `Fixes: #` /
`Closes: #` / `Refs: #` OR (b) described the issue in-PR following the
relevant issue template
- [x] I have not referenced internal/instance-local Paperclip issues or
links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip`
URLs)
- [x] My branch name describes the change (e.g. `docs/...`, `fix/...`)
and contains no internal Paperclip ticket id or instance-derived details
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [x] All Paperclip CI gates are green
- [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups
- [x] I will address all Greptile and reviewer comments before
requesting merge

Co-authored-by: Paperclip <noreply@paperclip.ing>
2026-08-12 11:29:51 -07:00
Nicky LeachandPaperclip 6a5b293240 test(server): fix onboarding first-task teardown foreign-key race (#11284)
## Thinking Path

> - Paperclip is the open source app people use to manage AI agents for
work.
> - The server coordinates issue work and heartbeat runs.
> - The onboarding first-task route sends an assignment wake in the
background.
> - The route test removes related database rows during teardown.
> - A late heartbeat run can keep foreign-key child rows alive during
teardown.
> - This pull request drains the wake and deletes run rows in
foreign-key order.
> - The benefit is a stable test that keeps the onboarding behavior
unchanged.

## Linked Issues or Issue Description

**What happened?**

The onboarding first-task route sent a background assignment wake. The
test teardown removed parent rows before the wake-created heartbeat rows
finished.

**Expected behavior**

The test teardown should wait for the background wake and remove
heartbeat rows before it removes their parent rows.

**Steps to reproduce**

1. Run the onboarding first-task route test.
2. Repeat the test many times.
3. Observe an intermittent foreign-key error during teardown.

**Paperclip version or commit**

Commit `c30fe965920eeb7e7fb88e17574a65bed8fc01a4`.

**Deployment mode**

Local dev (pnpm dev).

**Installation method**

Built from source (pnpm dev / pnpm build).

**Agent adapter(s) involved**

Not adapter-specific (core bug).

**Database mode**

Embedded PGlite (default — DATABASE_URL unset).

## What Changed

- Stub the server adapter in the route test so the dispatched run
finishes at once.
- Drain heartbeat runs to quiescence before teardown.
- Delete heartbeat runs and child rows before their parent rows.
- Delete runtime state and company skill rows in foreign-key order.
- Keep the route behavior and all three test assertions unchanged.

## Verification

- Run `pnpm exec vitest run
src/__tests__/issue-onboarding-first-task-routes.test.ts` from the
`server` package.
- The author ran the suite 25 times with 25 passes.
- The suite reproduced the teardown foreign-key error before this
change.

## Risks

Low risk. This change affects one test file and does not change product
code or route behavior.

## Model Used

OpenAI GPT-5. The model used tool calls and code review assistance. The
exact context window and reasoning mode were not exposed in this run.

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have searched GitHub for duplicate or related PRs and linked
them above
- [x] I have either (a) linked existing issues with `Fixes: #` /
`Closes: #` / `Refs: #` OR (b) described the issue in-PR following the
relevant issue template
- [x] I have not referenced internal/instance-local Paperclip issues or
links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip`
URLs)
- [x] My branch name describes the change (e.g. `docs/...`, `fix/...`)
and contains no internal Paperclip ticket id or instance-derived details
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [x] I have updated relevant documentation to reflect my changes
- [x] All Paperclip CI gates are green
- [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups
- [x] I will address all Greptile and reviewer comments before
requesting merge

Co-authored-by: Paperclip <noreply@paperclip.ing>
2026-08-12 10:42:58 -07:00
Nicky LeachandPaperclip f9bd0438e1 fix(server): stop terminal workspace reaper starving on oldest candidates (#11238)
## Thinking Path

> - Paperclip is the open source app people use to manage AI agents for
work.
> - The server runs a scheduled reaper that archives terminal workspaces
after it checks their state.
> - The reaper reads candidates in `updatedAt` order and skips
candidates that do not qualify for archive.
> - The fixed page kept the same skipped candidates at the front, so the
reaper did not inspect later eligible workspaces.
> - This pull request adds a keyset cursor and a throttled log for
sweeps that archive no workspace.
> - The benefit is that the reaper inspects all candidates over time and
reports an inert sweep.

## Linked Issues or Issue Description

**What happened?**

The terminal workspace reaper inspected a fixed page of old candidates.
Ineligible candidates stayed in that page, so the reaper skipped later
eligible workspaces on every sweep.

**Expected behavior**

The reaper must inspect each candidate over time and archive every
eligible terminal workspace.

**Steps to reproduce**

1. Create more than 50 terminal workspace candidates.
2. Keep the oldest page ineligible for archive.
3. Place an eligible workspace after that page.
4. Run repeated reaper sweeps.
5. Observe that the later eligible workspace remains unarchived.

**Paperclip version or commit**

Commit `3efdf555e6e14a46747c796c3c554438bfc03261`.

**Deployment mode**

Built from source with the server test suite.

**Installation method**

Built from source.

**Agent adapter(s) involved**

Not adapter-specific (core bug).

**Database mode**

Not database-related.

## What Changed

- Add a keyset cursor that uses `(updatedAt, id)` order across reaper
pages.
- Reset the cursor at the end of the candidate set so the next sweep
starts at the beginning.
- Add a throttled log when a sweep inspects candidates but archives
none.
- Add regression tests for archive delivery and starvation.

## Verification

- `pnpm --filter @paperclipai/server exec vitest run
src/__tests__/execution-workspaces-service.test.ts` — 45 tests pass.
- `pnpm --filter @paperclipai/server exec vitest run
src/__tests__/server-startup-feedback-export.test.ts` — 16 tests pass.
- `pnpm --filter @paperclipai/server typecheck` — clean.

## Risks

Low risk. The change affects only candidate paging and the related
reaper log. The cursor resets after the candidate set, so the sweep
remains periodic.

## Model Used

Codex, OpenAI GPT-5, extended reasoning, tool use, and code execution.

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have searched GitHub for duplicate or related PRs and linked
them above (no exact duplicate found; related scheduler PR #10911 is
distinct)
- [x] I have either (a) linked existing issues with `Fixes: #` / `Closes
#` / `Refs #` OR (b) described the issue in-PR following the relevant
issue template
- [x] I have not referenced internal/instance-local Paperclip issues or
links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip`
URLs)
- [x] My branch name describes the change (e.g. `docs/...`, `fix/...`)
and contains no internal Paperclip ticket id or instance-derived details
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [x] I have updated relevant documentation to reflect my changes (no
documentation applies; this is an internal reaper behavior change)
- [x] All Paperclip CI gates are green
- [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups
- [x] I will address all Greptile and reviewer comments before
requesting merge

---------

Co-authored-by: Paperclip <noreply@paperclip.ing>
2026-08-12 10:21:00 -07:00
Nicky LeachandPaperclip e5a7fd7038 Add sandbox device-login for the Codex adapter (#11237)
## Thinking Path

> - Paperclip helps people manage AI agents for work.
> - Agent adapters connect Paperclip to tools such as the Codex command
line tool.
> - A sandboxed Codex agent may start without a credential.
> - The operator needs a safe sign-in flow that does not expose
credentials to the shared package or the sandbox.
> - This pull request adds a company-scoped device-login flow with a
temporary Daytona sandbox.
> - The flow promotes the credential only after readiness checks pass
and removes the temporary sandbox after use.
> - The result lets an operator sign in to a sandboxed Codex agent from
the agent form.

## Linked Issues or Issue Description

**Subsystem affected**

Cross-cutting (multiple of the above)

**Problem or motivation**

A Codex adapter that runs in a sandbox cannot authenticate when the
company has no pre-provisioned Codex credential.

**Proposed solution**

Add a company-scoped device-login session. Start a temporary sandbox,
run `codex login --device-auth`, stream the code and URL, verify
readiness, promote the credential, and delete the sandbox.

**Alternatives considered**

Pre-provisioning a credential does not support first-time sandbox login.
Keeping the credential in the login sandbox does not provide a durable
company credential.

**Roadmap alignment**

This supports the roadmap item for cloud and sandbox agents.

**Additional context**

The flow uses a five-minute cleanup reaper, compare-and-set status
changes, and a PostgreSQL advisory lock to protect promotion and
cleanup.

## What Changed

- Add the adapter login-session contract, database table, and migration.
- Add company-scoped server routes and a service for sandbox device
login.
- Add credential promotion, readiness checks, and cleanup after login.
- Add restart-safe cleanup for abandoned login sandboxes.
- Add sandbox login controls to the agent creation and edit forms.
- Keep device-login and vendor identifiers out of public shared and
adapter UI symbols.

## Verification

- `pnpm --filter @paperclipai/adapter-codex-local exec vitest run`
passed with 310 tests at the submitted commit.
- The server login route, service, and reaper tests passed with 45 tests
at the submitted commit.
- The agent form render tests passed with 26 tests at the submitted
commit.
- The public-symbol leak check passed at the submitted commit.
- A live Daytona sign-in flow still requires confirmation by a user with
a live sandbox.

## Risks

The migration adds a new company-scoped table. A promotion or cleanup
race could remove a credential or leave a sandbox active, so the service
uses claims, compare-and-set transitions, and an advisory lock. The live
Daytona flow needs operator confirmation because local tests do not
provide a real browser sign-in.

## Model Used

OpenAI Codex, GPT-5, tool use and code execution, extended reasoning.

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have searched GitHub for duplicate or related PRs and linked
them above
- [x] I have either (a) linked existing issues with `Fixes: #` /
`Closes: #` / `Refs: #` OR (b) described the issue in-PR following the
relevant issue template
- [x] I have not referenced internal/instance-local Paperclip issues or
links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip`
URLs)
- [x] My branch name describes the change (e.g. `docs/...`, `fix/...`)
and contains no internal Paperclip ticket id or instance-derived details
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [x] All Paperclip CI gates are green
- [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups
- [x] I will address all Greptile and reviewer comments before
requesting merge

---------

Co-authored-by: Paperclip <noreply@paperclip.ing>
2026-08-12 08:58:25 -07:00
Nicky LeachandClaude Opus 4.8 67001ec6eb chore(db): treat Drizzle migration snapshots as binary in diffs (#11254)
## Thinking Path

> - Paperclip is the open source app people use to manage AI agents for
work.
> - Paperclip stores its state in a Postgres database, managed in
`packages/db`.
> - The schema uses Drizzle. `drizzle-kit` writes a full-schema snapshot
to `packages/db/src/migrations/meta/` for every migration.
> - Each snapshot is a large generated JSON file. One snapshot is about
39k lines.
> - PR #11240 marked these files `linguist-generated=true`. That
collapses the file view and drops the files from language stats.
> - But `linguist-generated` does not change the PR line-count badge.
Git still counts every snapshot line, so a PR that adds one migration
shows a ~39k-line badge (two migrations show ~78k). PR #11237 shows
+84,665 for this reason.
> - This pull request adds `-diff` to the same files, so git treats them
as binary and their lines leave the +/- count.
> - The benefit is a pull request badge that reflects the real code
change, not generated snapshot noise.

## Linked Issues or Issue Description

No existing issue. This is a small follow-up to merged PR #11240.
Description follows the enhancement template:

**Problem / Motivation**
PR #11240 marked `packages/db/src/migrations/meta/**` as
`linguist-generated=true`. That attribute collapses the diff in the
Files-changed view and removes the files from language stats, but it
does not remove their lines from the PR additions/deletions badge. Each
Drizzle snapshot is a full copy of the schema (~39k lines), so any PR
that adds a migration still shows a huge line count. PR #11237 shows
+84,665, of which ~78k are two generated snapshots.

**Proposed Solution**
Add `-diff` to the same glob. Git then treats the snapshots as binary.
`git diff --numstat` reports `-` for these files, so their lines leave
the +/- badge and GitHub shows "Binary file not shown" in place of the
full JSON.

**Alternatives Considered**
- Keep only `linguist-generated`: leaves the misleading ~39k/78k badge
on every migration PR.
- Use the `binary` macro (`-diff -merge -text`): also disables EOL
normalization. This repo has open CRLF/LF work, so `-text` is left unset
on purpose.

## What Changed

- Added `-diff` to `src/migrations/meta/**` in
`packages/db/.gitattributes`.
- Kept `linguist-generated=true` (language stats) and `-merge` (no
auto-merge of generated snapshots).
- Left `-text` unset on purpose, so end-of-line normalization stays
intact.
- Left the `.sql` migration files untouched, so their diffs stay visible
for review.

## Verification

Check the attributes and confirm the snapshot is now treated as binary:

```
git check-attr linguist-generated diff merge -- \
  packages/db/src/migrations/meta/0031_snapshot.json \
  packages/db/src/migrations/0009_fast_jackal.sql

git diff --numstat origin/master...origin/feat/adapter-sandbox-login -- \
  packages/db/src/migrations/meta/0214_snapshot.json
```

Expected:

```
packages/db/src/migrations/meta/0031_snapshot.json: linguist-generated: true
packages/db/src/migrations/meta/0031_snapshot.json: diff: unset
packages/db/src/migrations/meta/0031_snapshot.json: merge: unset
packages/db/src/migrations/0009_fast_jackal.sql: linguist-generated: unspecified
packages/db/src/migrations/0009_fast_jackal.sql: diff: unspecified
packages/db/src/migrations/0009_fast_jackal.sql: merge: unspecified

-	-	packages/db/src/migrations/meta/0214_snapshot.json
```

The snapshot reports `-` in numstat (binary, not counted). The `.sql`
migration keeps normal diff behavior. GitHub reads the rule from the PR
tree, so the badge drops on the next PR that touches these files.

## Risks

Low risk. The change only affects how git and GitHub render and count
generated files. It does not touch application code, the schema, or any
migration.

- With `-diff`, GitHub and local `git diff` no longer show a text diff
for a snapshot. This is intended; the files are generated and are not
reviewed by hand. The raw file is still viewable.
- `-text` is left unset, so this change does not affect the CRLF/LF
handling that other PRs (for example #8922) address.

## Model Used

Claude Opus 4.8 (Anthropic), model ID `claude-opus-4-8`, used through
Claude Code with extended thinking and tool use.

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have searched GitHub for duplicate or related PRs and linked
them above
- [x] I have either (a) linked existing issues with `Fixes: #` / `Closes
#` / `Refs #` OR (b) described the issue in-PR following the relevant
issue template
- [x] I have not referenced internal/instance-local Paperclip issues or
links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip`
URLs)
- [x] My branch name describes the change (e.g. `docs/...`, `fix/...`)
and contains no internal Paperclip ticket id or instance-derived details
- [x] I have run tests locally and they pass — not applicable; this
change touches no code path, only git/GitHub file handling
- [x] I have added or updated tests where applicable — not applicable;
`.gitattributes` behavior is verified with `git check-attr` and `git
diff --numstat` (see Verification)
- [x] I have updated relevant documentation to reflect my changes — not
applicable; the `.gitattributes` file documents its own rules inline
- [x] I have considered and documented any risks above
- [ ] All Paperclip CI gates are green
- [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups

Co-authored-by: Claude Opus 4.8 <noreply@anthropic.com>
2026-08-11 21:37:07 -07:00
Nicky LeachandClaude Opus 4.8 c0bdf26633 chore(db): collapse Drizzle migration snapshot diffs and block auto-merge (#11240)
## Thinking Path

> - Paperclip is the open source app people use to manage AI agents for
work.
> - Paperclip stores its state in a Postgres database, managed in
`packages/db`.
> - The schema uses Drizzle. `drizzle-kit` writes a full-schema snapshot
to `packages/db/src/migrations/meta/` for every migration.
> - Each snapshot is a large generated JSON file. One snapshot is over
200 KB.
> - GitHub shows these files as 30k+ line diffs in a pull request. The
diffs add no review value, because a human never edits the files.
> - The files also merge badly. `drizzle-kit` computes the `id`/`prevId`
chain and the full schema state, so a line-level merge of two snapshots
produces a file that no real `generate` run creates.
> - This pull request adds a `.gitattributes` file that marks the
snapshot directory as generated and blocks its auto-merge.
> - The benefit is clean pull request diffs and a loud conflict that
forces the correct fix when two branches add a migration.

## Linked Issues or Issue Description

No existing issue. This is a small repository-hygiene change.
Description follows the enhancement template:

**Problem / Motivation**
Every migration adds a full-schema snapshot JSON under
`packages/db/src/migrations/meta/`. These files are large and generated.
GitHub renders them as 30k+ line diffs in pull requests, which buries
the real change (the `.sql` migration) in noise. The files also have no
meaningful line-level merge: `drizzle-kit` computes each snapshot's
`id`/`prevId` chain and full schema state.

**Proposed Solution**
Add `packages/db/.gitattributes`:
- `linguist-generated=true` on `src/migrations/meta/**` — GitHub
collapses the diff and drops the files from language stats.
- `-merge` on the same glob — git refuses the line-level merge and
raises a conflict instead of fabricating an invalid snapshot.

**Alternatives Considered**
- `-diff` / `binary`: hides the diff completely and blocks text merge,
but also blocks any local `git diff` and gives a worse conflict
experience. `linguist-generated` keeps the file expandable and
text-based, so it is the lighter option.
- Do nothing: leaves the noisy diffs and the risk of a silent bad merge.

## What Changed

- Added `packages/db/.gitattributes`.
- Marked `src/migrations/meta/**` as `linguist-generated=true` to
collapse the snapshot and journal diffs on GitHub.
- Set `-merge` on the same files so git raises a conflict instead of
auto-merging generated snapshots.
- Left the `.sql` migration files untouched, so their diffs stay visible
for review.

## Verification

Run `git check-attr` against the affected files and a control `.sql`
file:

```
git check-attr linguist-generated merge -- \
  packages/db/src/migrations/meta/0031_snapshot.json \
  packages/db/src/migrations/meta/_journal.json \
  packages/db/src/migrations/0009_fast_jackal.sql
```

Expected output:

```
packages/db/src/migrations/meta/0031_snapshot.json: linguist-generated: true
packages/db/src/migrations/meta/0031_snapshot.json: merge: unset
packages/db/src/migrations/meta/_journal.json: linguist-generated: true
packages/db/src/migrations/meta/_journal.json: merge: unset
packages/db/src/migrations/0009_fast_jackal.sql: linguist-generated: unspecified
packages/db/src/migrations/0009_fast_jackal.sql: merge: unspecified
```

The snapshot and journal files carry both attributes. The `.sql`
migration keeps its normal diff and merge behavior. GitHub applies the
rule from the pull request tree, so the collapse shows on the next pull
request that touches these files.

## Risks

Low risk. The change only affects git and GitHub display and merge
behavior for generated files. It does not touch application code, the
schema, or any migration.

- `-merge` leaves the current-branch version in the working tree on
conflict and marks the file conflicted. It does not insert conflict
markers into the JSON. The correct resolution stays "renumber the later
migration and regenerate", then commit.
- Related open pull requests #879 and #8922 also add `.gitattributes`
rules for migration files, but for CRLF/LF hash mismatches on Windows.
If either lands, a follow-up can merge the rules into one file. There is
no functional overlap with this change.

## Model Used

Claude Opus 4.8 (Anthropic), model ID `claude-opus-4-8`, used through
Claude Code with extended thinking and tool use.

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have searched GitHub for duplicate or related PRs and linked
them above
- [x] I have either (a) linked existing issues with `Fixes: #` / `Closes
#` / `Refs #` OR (b) described the issue in-PR following the relevant
issue template
- [x] I have not referenced internal/instance-local Paperclip issues or
links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip`
URLs)
- [x] My branch name describes the change (e.g. `docs/...`, `fix/...`)
and contains no internal Paperclip ticket id or instance-derived details
- [x] I have run tests locally and they pass — not applicable; this
change touches no code path, only git/GitHub file handling
- [x] I have added or updated tests where applicable — not applicable;
`.gitattributes` behavior is verified with `git check-attr` (see
Verification)
- [x] I have updated relevant documentation to reflect my changes — not
applicable; the `.gitattributes` file documents its own rules inline
- [x] I have considered and documented any risks above
- [ ] All Paperclip CI gates are green
- [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups

Co-authored-by: Claude Opus 4.8 <noreply@anthropic.com>
2026-08-11 16:59:03 -07:00
Nicky LeachandPaperclip 8f478242f1 fix(adapter-utils): close sandbox stdin file race with atomic write and fault-tolerant poller (#11235)
## Thinking Path

> - Paperclip is the open source app people use to manage AI agents for
work
> - Agent adapters use execution targets to exchange input and output
with sandbox processes
> - The sandbox input path can expose partial files, and the poller can
delete or stop on invalid input
> - These timing windows can lose agent input without a clear error
> - This pull request makes host writes atomic and makes the poller
retry invalid files before it drops them
> - The benefit is reliable sandbox input delivery with visible failure
after bounded retries

## Linked Issues or Issue Description

Closes #10874

## What Changed

- Decode host input into a temporary file, then rename it onto the final
JSON path.
- Apply the same atomic write pattern to the filesystem client.
- Parse each input file before deletion.
- Retry parse failures and drop a file after the bounded retry limit
with an error event.
- Add regression tests for empty, partial, and permanently malformed
input files.

## Verification

- `pnpm exec vitest run
packages/adapter-utils/src/execution-target-stdin-race.test.ts` passes
5/5 tests.
- Related sandbox callback, execution target, and sandbox execution
suites pass 71/71 tests.
- TypeScript checks pass for the changed files.
- The regression suite fails on the old code and passes on this change.

## Risks

- Low risk. The change affects sandbox input file handling and adds
bounded retry behavior.
- A permanently malformed file now creates an error event after the
retry limit.

> This bug fix does not add a core feature, so a roadmap change is not
needed.

## Model Used

Codex, OpenAI GPT-5, current agent runtime, large context window, tool
use and code review support.

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have searched GitHub for duplicate or related PRs and linked
them above
- [x] I have either (a) linked existing issues with `Fixes: #` / `Closes
#` / `Refs #` OR (b) described the issue in-PR following the relevant
issue template
- [x] I have not referenced internal/instance-local Paperclip issues or
links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip`
URLs)
- [x] My branch name describes the change (e.g. `docs/...`, `fix/...`)
and contains no internal Paperclip ticket id or instance-derived details
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [x] All Paperclip CI gates are green
- [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups
- [x] I will address all Greptile and reviewer comments before
requesting merge

---------

Co-authored-by: Paperclip <noreply@paperclip.ing>
2026-08-11 16:05:41 -07:00
Nicky LeachandPaperclip 459469638e feat(adapter-codex-local): add secure device-login building blocks (#11097)
## Thinking Path

> - Paperclip connects AI agents to local and remote runtimes.
> - The Codex local adapter needs a safe device-login flow.
> - A future sandbox integration needs strict prompt validation, secret
protection, cleanup, and private credential storage.
> - This pull request adds tested building blocks for that flow.
> - The result gives a later Daytona integration a clear security
boundary.

## Linked Issues or Issue Description

No public issue covers this change.

**Problem or motivation**

The Codex local adapter has no safe, reusable flow to prove device login
inside an isolated sandbox.

**Proposed solution**

Add parser, runner, credential export, and proof helpers. Validate the
prompt, protect login data, store credentials in a private run-scoped
home, and dispose all sandbox resources.

**Alternatives considered**

Do not connect a production Daytona driver in this change. Use an
injected sandbox driver and focused tests first. This keeps the security
controls testable before live provider integration.

**Roadmap alignment**

The change extends the Codex local adapter. It does not add a core
Paperclip route or duplicate a planned core feature.

**Additional context**

The flow keeps the login URL, code, and token out of logs, results, and
errors. The proof home uses a company-scoped root and a run-scoped
private directory.

## What Changed

- Add a pure parser for the exact Codex device-login URL and one-time
code shape.
- Add a sandbox runner with prompt handling, timeout, cancellation, and
disposal.
- Add a credential export step with company scoping, path checks,
payload checks, private modes, locking, and cleanup.
- Add redacted device-login fixtures and focused tests for parsing,
secret redaction, runner outcomes, credential export, and cleanup.

## Verification

- Run `pnpm --filter @paperclipai/adapter-codex-local exec vitest run`.
- Run `pnpm --filter @paperclipai/adapter-codex-local exec tsc
--noEmit`.
- Review tests for strict URL and code validation, timeout,
cancellation, disposal, secret redaction, path safety, payload safety,
file modes, and cleanup.

## Risks

- This change provides building blocks, not a live Daytona proof.
- A later integration must connect the runner to a concrete sandbox
driver.
- Credential export depends on existing Codex authentication cache
helpers.
- Incorrect path or payload assumptions can reject valid credentials.

## Model Used

Codex, GPT-5, tool use, code execution, and repository review. The
Paperclip runtime controls the exact context window and reasoning mode.

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have searched GitHub for duplicate or related PRs and linked
them above
- [x] I have either (a) linked existing issues with `Fixes: #` /
`Closes: #` / `Refs #` OR (b) described the issue in-PR following the
relevant issue template
- [x] I have not referenced internal/instance-local Paperclip issues or
links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip`
URLs)
- [x] My branch name describes the change and contains no internal
Paperclip ticket id or instance-derived details
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [ ] All Paperclip CI gates are green
- [ ] Greptile is 5/5 with no open P2s, recommendations, or follow-ups
- [x] I will address all Greptile and reviewer comments before
requesting merge

---------

Co-authored-by: Paperclip <noreply@paperclip.ing>
2026-08-10 16:12:30 -07:00