Commit Graph
3416 Commits
Author SHA1 Message Date
DottaandClaude Fable 5 6542b8ad4c test(e2e): add probe migration for cross-version update proof
Test-only branch commit: adds one pending migration on top of
test/e2e-update-base so e2e-update-migrations.sh can prove that a managed
update applies migrations to the real database.

Co-Authored-By: Claude Fable 5 <noreply@anthropic.com>
2026-07-31 21:48:26 +00:00
DottaandPaperclip 3fb1ce83b5 test(cli): isolate update backup state
Co-Authored-By: Paperclip <noreply@paperclip.ing>
2026-07-31 19:34:20 +00:00
DottaandPaperclip ba65687bc1 fix(installer): close remaining review gaps
Co-Authored-By: Paperclip <noreply@paperclip.ing>
2026-07-31 19:21:16 +00:00
DottaandPaperclip 0d8792da85 chore: retrigger Greptile review
Co-Authored-By: Paperclip <noreply@paperclip.ing>
2026-07-31 19:09:44 +00:00
DottaandClaude Fable 5 b15c06001e fix(installer): make install.sh compatible with macOS bash 3.2
${value,,} is a bash-4 expansion; macOS ships bash 3.2, so install.sh
died with 'bad substitution' before doing anything on every default
mac shell. Caught by the PAP-14994 macos-14 e2e run.

Co-Authored-By: Claude Fable 5 <noreply@anthropic.com>
2026-07-31 18:59:49 +00:00
DottaandPaperclip 9af526e819 test(installer): keep lifecycle smoke runnable after merge
Co-Authored-By: Paperclip <noreply@paperclip.ing>
2026-07-31 18:57:18 +00:00
DottaandPaperclip d641914741 Merge origin/master into feat/managed-install-integration
Co-Authored-By: Paperclip <noreply@paperclip.ing>
2026-07-31 18:53:11 +00:00
DottaandPaperclip 54f10dba44 fix(cli): explain unavailable update backups
Co-Authored-By: Paperclip <noreply@paperclip.ing>
2026-07-31 18:52:28 +00:00
Nicky LeachandPaperclip c4f62644b0 docs(daytona): document operator enablement for the advisory bwrap wrapper (#10560)
## Thinking Path

> - Paperclip is the open source app people use to manage AI agents for
work
> - The Daytona sandbox provider now uses an advisory bwrap wrapper
> - Operators need clear host and image setup for bubblewrap, sudo, and
user namespaces
> - The repo should document that setup, but it should not own
provisioning
> - This pull request adds the operator guidance to the shared sandbox
requirements and the Daytona README
> - The benefit is that operators can enable the wrapper with the same
steps the code expects

## Linked Issues or Issue Description

Refs #10554 and #10541.

## What Changed

- Added an advisory bwrap prerequisites section to
`packages/plugins/sandbox-providers/SANDBOX-REQUIREMENTS.md`.
- Added an operator enablement section to
`packages/plugins/sandbox-providers/daytona/README.md`.
- Documented the install commands, the sudoers rule, the user namespace
setting, and the verification command.
- Kept provisioning out of the repo and left it to the image or snapshot
layer.

## Verification

- `git diff --check origin/master...HEAD`
- `gh pr checks 10560`

## Risks

- Low risk. This change updates documentation only.
- The docs can drift if the host setup changes later.
- Provisioning still lives outside the repo.

## Model Used

- OpenAI Codex, GPT-5, tool use enabled.

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used with version and capability
details
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have searched GitHub for duplicate or related PRs and linked
them above
- [x] I have either linked existing issues with `Fixes: #` / `Closes: #`
/ `Refs #` OR described the issue in-PR following the relevant issue
template
- [x] I have not referenced internal or instance-local Paperclip issues
or links
- [x] My branch name describes the change and contains no internal
Paperclip ticket id or instance-derived details
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [x] All Paperclip CI gates are green
- [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups
- [x] I will address all Greptile and reviewer comments before
requesting merge

---------

Co-authored-by: Paperclip <noreply@paperclip.ing>
2026-07-31 11:50:11 -07:00
Devin Foley 51bb41c7e3 Expose the running build commit on the unauthenticated health response (#10563)
## Thinking Path

> - Paperclip is the open source app people use to manage AI agents for
work
> - Instances run self-hosted or under hosting/deploy tooling, and
operators need to observe what build a server is actually running
> - `/api/health` carries the git SHA only inside `serverInfo`, which is
gated to board/agent actors — anonymous callers get a redacted body with
no version signal at all
> - Deploy tooling that manages instances from outside (fleet rollouts,
hosting providers, upgrade scripts) therefore cannot ground-truth that a
deploy actually shipped without holding credentials
> - A build commit is a plain git SHA of this public repository — it is
not a secret, and gating it buys no security while blocking legitimate
verification
> - This pull request surfaces the running build commit as a top-level
`commit` field on every `/api/health` response, including the redacted
anonymous one
> - The benefit is credential-free deploy verification: any operator or
tool can confirm which commit an instance serves, while the fuller
`serverInfo` block stays access-controlled as before

## Linked Issues or Issue Description

No existing public issue — inline description following the feature
request template:

**Subsystem affected**

Server (API, runs, routes)

**Problem or motivation**

An anonymous `GET /api/health` returns a redacted body with no version
information; the running git SHA exists only in
`serverInfo.git.fullSha`, which requires a board/agent actor. External
deploy tooling (fleet rollouts, hosting providers, upgrade scripts)
therefore cannot verify that an instance is actually serving the build
it was just upgraded to — a rollout that silently keeps running the old
image is indistinguishable from a successful one at the health endpoint.

**Proposed solution**

Surface the running build commit as a top-level nullable `commit` field
on every `/api/health` response shape, including the redacted anonymous
one, while keeping the fuller `serverInfo` block access-controlled as
before. A build commit is a plain git SHA of this public repository —
exposing it costs nothing and enables credential-free deploy
verification, like the `version` endpoints on most server software.

**Alternatives considered**

Authenticating deploy tooling as a board actor to read `serverInfo` —
rejected: it forces credential plumbing into infrastructure that only
needs a public SHA, and adds a whole class of auth-misconfiguration
failure to deploy verification.

**Roadmap alignment**

Not on ROADMAP.md; a small operational observability improvement, no
overlap with planned core work.

## What Changed

- `server/src/routes/health.ts`: derive `commit` from the server info
snapshot (`serverInfo.git.fullSha` when git metadata is available, else
`null`) and include it as a top-level field on every `/api/health`
response shape — the redacted anonymous body, the full-details body, the
no-db body, and the 503 database-unreachable body.
- `serverInfo` itself remains gated to full-details responses exactly as
before; only the bare commit is newly public.
- `server/src/__tests__/health.test.ts`: updated exact-shape assertions
to include `commit`, and added an assertion that `commit` is `null` (not
omitted) when git metadata is unavailable. The redacted-response tests
now pin that anonymous callers receive the commit.

## Verification

- `pnpm vitest run src/__tests__/health.test.ts` in `server/` — 13 tests
pass, including the redacted-anonymous shapes (which now pin the
`commit` field) and the git-unavailable `null` case.
- `tsc -p server/tsconfig.json --noEmit` — clean.
- Manual: `curl -s https://<instance>/api/health` as an anonymous caller
returns `"commit": "<full sha>"` alongside the existing redacted fields.

## Risks

- **Version disclosure:** anonymous callers can now fingerprint the
exact running commit. This is a deliberate trade-off: the builds are of
a public repository (the SHA reveals no private code), the endpoint
already responds to anonymous callers, and the operational value —
verifying deploys actually shipped — outweighs the marginal
fingerprinting surface. Operators who consider this sensitive are
typically fronting `/api` with their own access controls already.
- Otherwise low risk: no behavioral change to any gated field, no schema
or API-surface removal; `commit: null` keeps the field shape stable when
git metadata is absent (e.g. non-git installs).

## Model Used

Claude Opus 4.8 (`claude-opus-4-8`, extended thinking, via Claude Code
with tool use and code execution) authored the change and tests;
finalized and PR'd under Claude Fable 5 (`claude-fable-5`).

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have searched GitHub for duplicate or related PRs and linked
them above
- [x] I have either (a) linked existing issues with `Fixes: #` / `Closes
#` / `Refs #` OR (b) described the issue in-PR following the relevant
issue template
- [x] I have not referenced internal/instance-local Paperclip issues or
links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip`
URLs)
- [x] My branch name describes the change (e.g. `docs/...`, `fix/...`)
and contains no internal Paperclip ticket id or instance-derived details
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [x] I have updated relevant documentation to reflect my changes (none
needed beyond code comments — health endpoint has no standalone doc)
- [x] I have considered and documented any risks above
- [x] All Paperclip CI gates are green
- [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups
- [x] I will address all Greptile and reviewer comments before
requesting merge
canary/v2026.731.0-canary.14
2026-07-31 11:46:34 -07:00
DottaandPaperclip 7a10927ca3 fix(release): gate channel on published package closure
Publish the user-facing CLI last, wait for registry visibility after every workspace package, and verify a clean canary install before tagging.

Co-Authored-By: Paperclip <noreply@paperclip.ing>
2026-07-31 18:38:54 +00:00
DottaandClaude Fable 5 8699e457e0 fix(install): honor ambient GitHub tokens; e2e onboards before service test
- install --ref resolves refs via anonymous api.github.com, which 403s from
  rate-limited shared IPs (CI runners, corporate NAT). Use GH_TOKEN/GITHUB_TOKEN
  when present, passed through a 0600 curl --config file so the token never
  appears in process args.
- e2e: run the real quickstart (onboard --yes --install-service) before the
  service assertions, and capture install.sh guard output before grep so
  pipefail does not eat the expected nonzero exit.

Co-Authored-By: Claude Fable 5 <noreply@anthropic.com>
2026-07-31 18:37:31 +00:00
DottaandClaude Fable 5 a2394ce0d9 test(install): use npm latest channel for the e2e npm leg
canary 2026.731.0-canary.12 is uninstallable registry-side (its
@paperclipai/server pin was never published) — a release-pipeline issue,
not an installer one. latest 2026.722.0 installs cleanly.

Co-Authored-By: Claude Fable 5 <noreply@anthropic.com>
2026-07-31 18:23:17 +00:00
DottaandClaude Fable 5 57ec5c0a86 fix(install): provision corepack pnpm shim for git checkout builds
Workspace build scripts (packages/db, packages/plugins/sdk) invoke bare
`pnpm`. On a clean machine pnpm exists only through corepack, so the
hermetic git-ref build died with 'pnpm: not found' inside
`pnpm -r --filter @paperclipai/server... run build`. Enable a corepack
pnpm shim into the staging dir and prepend it to PATH for every checkout
build command. Found by the PAP-14994 clean-machine Docker e2e.

Co-Authored-By: Claude Fable 5 <noreply@anthropic.com>
2026-07-31 18:21:11 +00:00
d295251550 feat(adapter-claude): add Claude Sonnet 5 to the static model fallback (#10280)
## Thinking Path

> - Paperclip is the open source app people use to manage AI agents for
work
> - Agents pick their model from a dropdown in agent config, populated
per-adapter by `listAdapterModels()` → each adapter's live provider
catalog merged over a static fallback list
> - For `claude_local`, newer model ids only reach the dropdown via the
live Anthropic `/v1/models` fetch, which needs a server
`ANTHROPIC_API_KEY`, a <5s round-trip, non-Bedrock mode, and account
entitlement; on any miss it silently falls back to the static `models`
array
> - Claude Sonnet 5 (`claude-sonnet-5`) is a current flagship but was
absent from that static fallback, so it appeared only when live
discovery happened to succeed — i.e. "the newest model doesn't
consistently show up"
> - This pull request adds `claude-sonnet-5` to the `claude_local`
static model list so it is selectable regardless of the live-discovery
path
> - The benefit is a consistent, reliable dropdown that no longer
depends on a flaky live fetch to surface a shipped flagship model

## Linked Issues or Issue Description

No public GitHub issue. The bug is described inline following the
bug-report template:

**What happened**
The `claude_local` agent-config model dropdown intermittently omitted
Claude Sonnet 5. `claude-sonnet-5` was missing from the adapter's static
fallback `models` array (`packages/adapters/claude-local/src/index.ts`),
so it only surfaced when the live Anthropic `/v1/models` discovery
happened to succeed.

**Expected behavior**
Claude Sonnet 5 is a shipped flagship model and should always be
selectable in the dropdown, independent of whether live discovery
succeeds.

**Steps to reproduce**
1. Run the server without a working live Anthropic `/v1/models` path (no
`ANTHROPIC_API_KEY`, Bedrock mode, a discovery timeout, or a cache
miss).
2. Open agent config for a `claude_local` agent and inspect the model
dropdown.
3. Observe that `claude-sonnet-5` is absent because the static fallback
list omitted it.

**Deployment mode**
Self-hosted / local adapter (`claude_local`); the server process reads
`ANTHROPIC_API_KEY` from its environment.

## What Changed

- Added `{ id: "claude-sonnet-5", label: "Claude Sonnet 5" }` to the
`claude_local` static `models` fallback, immediately after
`claude-opus-4-8` (so Opus 4.8 stays the default first option).
- Added an explicit regression assertion in
`server/src/__tests__/adapter-models.test.ts` that `claude-sonnet-5` is
present in the `claude_local` fallback when live discovery is
unavailable.

## Verification

- `pnpm -C server exec vitest run src/__tests__/adapter-models.test.ts
-t "claude fallback"` — **passes** (the new `claude-sonnet-5` assertion
included).
- Reviewed the consuming tests: the fallback test also asserts
`models[0]?.id === "claude-opus-4-8"` (still index 0 — Sonnet 5 is index
1, unaffected); `adapter-registry.test.ts` reads `builtIn?.models`
dynamically, so no exact-array snapshot breaks.
- Change is a single static-data addition plus a test assertion; no
control-flow change.

## Risks

- Low risk. Pure additive change to a fallback list; no control-flow
change. Worst case is an id that a given account isn't entitled to,
which the existing "current"/manual-model UI paths already tolerate.

## Model Used

Claude (Anthropic), model id `claude-opus-4-8` (Opus 4.8), extended
thinking + tool use, run as the Paperclip CTO agent.

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have searched GitHub for duplicate or related PRs and linked
them above
- [x] I have either (a) linked existing issues with `Fixes: #` / `Closes
#` / `Refs #` OR (b) described the issue in-PR following the relevant
issue template
- [x] I have not referenced internal/instance-local Paperclip issues or
links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip`
URLs)
- [ ] My branch name describes the change (branch is the assigned
execution-workspace branch and cannot be renamed this run)
- [x] I have run tests locally and they pass (server adapter-models
"claude fallback" case)
- [x] I have added or updated tests where applicable (explicit
`claude-sonnet-5` fallback assertion)
- [x] I have updated relevant documentation to reflect my changes (n/a —
no docs reference this list)
- [x] I have considered and documented any risks above
- [ ] All Paperclip CI gates are green (pending CI)
- [ ] Greptile is 5/5 with no open P2s, recommendations, or follow-ups
(pending review)
- [x] I will address all Greptile and reviewer comments before
requesting merge

---------

Co-authored-by: Claude Opus 4.8 <noreply@anthropic.com>
Co-authored-by: Paperclip <noreply@paperclip.ing>
canary/v2026.731.0-canary.13
2026-07-31 13:15:42 -05:00
DottaandClaude Fable 5 5f3f71a5e7 test(install): bootstrap e2e CLI via npm pack tarball install
Running cli/dist/index.js in-checkout fails after build-npm.sh swaps in the
publishable package.json (externals like zod are not linked by pnpm). Pack
and npm-install the tarball instead — the same layout npm users get.

Co-Authored-By: Claude Fable 5 <noreply@anthropic.com>
2026-07-31 18:13:56 +00:00
DottaandClaude Fable 5 d65836a155 test(install): add clean-machine install lifecycle e2e script
Proves install --canary / install --ref (build-from-GitHub) / update --check /
update --rollback / payload reuse / bad-ref hygiene / service lifecycle /
uninstall-preserves-data on a pristine machine. Used by the PAP-14994
Docker + GitHub Actions verification matrix.

Co-Authored-By: Claude Fable 5 <noreply@anthropic.com>
2026-07-31 18:06:55 +00:00
DottaandPaperclip cd7f84965c fix(recovery): preserve hand-back wake liveness (#10562)
## Thinking Path

> - Paperclip is the open source app people use to manage AI agents for
work.
> - The heartbeat service delivers issue work to assigned agents.
> - Recovery can hand an issue back to its agent while the recovery run
is still active.
> - The hand-back wake can merge into that active run and disappear when
the run exits.
> - The stranded-work scan also treats the successful recovery run as
proof that the handed-back issue is live.
> - This pull request keeps the hand-back wake for follow-up delivery
and lets the scan repair a lost wake.
> - The benefit is that an assigned issue continues after recovery
without manual operator action.

## Linked Issues or Issue Description

No public issue exists. This is related to the wake reconciliation work
in #8943.

**What happened?**

A recovery action could hand an assigned issue back from `blocked` to
`todo`. The `issue_recovery_action_restored` wake then merged into the
recovery run that made the change. The wake disappeared when that run
exited. The stranded-work scan did not repair the issue because it
treated the successful recovery run as current liveness.

**Expected behavior**

Paperclip must dispatch the hand-back wake after the recovery run exits.
If that delivery is lost, the stranded-work scan must enqueue the
assigned `todo` issue again.

**Steps to reproduce**

1. Start a recovery run for an assigned blocked issue.
2. Resolve a recovery action with the `handed_back` outcome.
3. Move the issue to `todo` while the recovery run is still active.
4. Observe that the wake merges into the active run and no new run
starts after it exits.
5. Run the stranded-work scan and observe that the successful latest run
prevents repair.

**Paperclip version or commit**

`131d476a7e`

**Deployment mode**

Local dev (`pnpm dev`). The defect is in the core server and is not
deployment-specific.

**Agent adapter(s) involved**

Not adapter-specific. This is a core heartbeat and recovery defect.

## What Changed

- Added `issue_recovery_action_restored` to the wake reasons that
require follow-up delivery when an issue run is active.
- Made the stranded-work scan detect a resolved hand-back that occurred
during or after the latest successful run.
- Added focused regression tests for the heartbeat coalescing seam and
the stranded-work repair shape.
- Documented the hand-back liveness guarantee in execution semantics
section 9.1.

## Verification

- `pnpm exec vitest run
server/src/__tests__/heartbeat-comment-wake-batching.test.ts
server/src/__tests__/heartbeat-process-recovery.test.ts` passed: 104
tests.
- `pnpm --filter @paperclipai/server typecheck` passed.
- `pnpm -r typecheck` passed.
- `pnpm build` passed.
- `pnpm test:run` passed the server shard (3,095 passed, 2 skipped) and
UI shard (3,182 passed). One unrelated CLI test failed because the agent
environment exports static AWS credentials. `env -u AWS_ACCESS_KEY_ID -u
AWS_SECRET_ACCESS_KEY -u AWS_SESSION_TOKEN pnpm exec vitest run
cli/src/__tests__/secrets.test.ts` passed all 8 tests.
- `git diff --check` passed.
- All GitHub checks passed on commit `8b380e67e6`.
- Greptile gave 5/5 confidence with no comments or unresolved threads.

## Risks

- Low risk. The follow-up rule affects only a recovery hand-back wake
that arrives while the same issue already has an active run.
- The backstop adds one indexed recovery-action lookup for an assigned
`todo` issue whose latest run succeeded.
- The timestamp check uses the latest run start time. This includes
hand-backs made by that run and later hand-backs, but excludes older
resolved actions.

## Model Used

- OpenAI Codex with GPT-5 (`gpt-5`), agentic reasoning, tool use, and
code execution. The serving context-window size is not exposed to the
agent.

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have searched GitHub for duplicate or related PRs and linked
them above
- [x] I have either (a) linked existing issues with `Fixes: #` / `Closes
#` / `Refs #` OR (b) described the issue in-PR following the relevant
issue template
- [x] I have not referenced internal/instance-local Paperclip issues or
links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip`
URLs)
- [x] My branch name describes the change (e.g. `docs/...`, `fix/...`)
and contains no internal Paperclip ticket id or instance-derived details
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [x] All Paperclip CI gates are green
- [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups
- [x] I will address all Greptile and reviewer comments before
requesting merge

Co-authored-by: Paperclip <noreply@paperclip.ing>
canary/v2026.731.0-canary.12
2026-07-31 11:03:30 -07:00
Noah KellnerandNoah Kellner bd53b99686 feat(gemini-local): export detectGeminiQuotaExhausted for plugin adapter reuse (#3416)
## Thinking Path

> - Paperclip orchestrates AI agents via pluggable server-side adapters,
one per provider / CLI backend
> - Each adapter package exposes a server entry point
(`@paperclipai/adapter-<name>/server`) that downstream consumers —
including plugin adapters that wrap or extend the stock behavior —
re-use for helper functions
> - `gemini-local`'s server entry re-exports a curated set of parse
helpers from `./parse.js` (`parseGeminiJsonl`,
`isGeminiUnknownSessionError`, `describeGeminiFailure`,
`detectGeminiAuthRequired`, `isGeminiTurnLimitResult`) so consumers can
classify provider output without reaching into the package's internals
> - `detectGeminiQuotaExhausted` lives in the same `parse.ts` file next
to `detectGeminiAuthRequired`, is defined with `export function`, and is
the package's single source of truth for "is this output a Gemini quota
hit?" — but it is missing from the entry-point re-export block
> - As a result, any consumer that wants to classify quota exhaustion
either has to deep-import from `./server/parse.js` (brittle against
future `exports`-field changes) or reimplement the regex locally (drift
risk against the authoritative heuristic)
> - This pull request adds `detectGeminiQuotaExhausted` to the existing
re-export block, placed next to its thematic sibling
`detectGeminiAuthRequired`, with no other changes
> - The benefit is one extra supported public symbol on
`@paperclipai/adapter-gemini-local/server` — a purely additive ergonomic
improvement with no behavior change and no existing consumer impact

## What Changed

- `packages/adapters/gemini-local/src/server/index.ts`: added
`detectGeminiQuotaExhausted` to the `export { ... } from "./parse.js"`
block, inserted between `detectGeminiAuthRequired` and
`isGeminiTurnLimitResult` (thematic grouping — both `detect*` helpers)

## Verification

Local verification against the branch commit (base: `upstream/master` at
`b649bd45`):

```
$ pnpm --filter @paperclipai/adapter-gemini-local typecheck
> @paperclipai/adapter-gemini-local@0.3.1 typecheck
> tsc --noEmit
(exit 0)

$ pnpm --filter @paperclipai/adapter-gemini-local build
> @paperclipai/adapter-gemini-local@0.3.1 build
> tsc
(exit 0)

$ cd server && pnpm exec vitest run src/__tests__/gemini-local-execute.test.ts
 RUN  v3.2.4

 ✓ src/__tests__/gemini-local-execute.test.ts (3 tests) 1487ms
   ✓ gemini execute > passes prompt via --prompt and injects paperclip env vars
   ✓ gemini execute > always passes --approval-mode yolo
   ✓ gemini execute > uses a compact wake delta instead of the full heartbeat prompt when resuming a session

 Test Files  1 passed (1)
      Tests  3 passed (3)
```

Existing-consumer check — all references to `detectGeminiQuotaExhausted`
anywhere in the tree:

```
packages/adapters/gemini-local/src/server/index.ts:9    (this PR's new re-export)
packages/adapters/gemini-local/src/server/parse.ts:253  (the definition)
packages/adapters/gemini-local/src/server/test.ts:19    (intra-package import from "./parse.js")
packages/adapters/gemini-local/src/server/test.ts:174   (intra-package usage)
```

No cross-package consumer references the symbol today, so the new
re-export cannot break any existing import. It is strictly additive to
the public surface of `@paperclipai/adapter-gemini-local/server`.

## Risks

None. Purely additive re-export of a symbol that is already a named
export on `./parse.ts`. The clean-success path, failure paths, and all
other adapter behavior are untouched. No existing consumer is affected.

## Model Used

- **Provider**: Anthropic
- **Model**: Claude Opus 4.6 (1M context)
- **Interface**: Claude Code CLI
- **Role**: Upstream state verification (grep + diff against current
master), PR drafting against the `CONTRIBUTING.md` template, local
typecheck / build / test execution
- **Reasoning Mode**: Extended thinking enabled
- **Human oversight**: Noah Kellner reviewed the one-line re-export
addition and approved submission

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [x] If this change affects the UI, I have included before/after
screenshots
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [x] I will address all Greptile and reviewer comments before
requesting merge

Co-authored-by: Noah Kellner <noah.kellner@xenoscloud.com>
2026-07-31 13:00:26 -05:00
DottaandPaperclip bec04da2c2 fix(ui): make task header status and priority controls interactive (#10526)
<!-- Write all pull request text in Simplified Technical English
(ASD-STE100): short sentences, one instruction per sentence, simple
approved vocabulary, and the active voice. -->

## Thinking Path

> - Paperclip is the open source app people use to manage AI agents for
work
> - Operators use the task page header to read and change task state
> - The status and priority icons already had picker logic, but the
compact triggers were not semantic controls
> - This made pointer and keyboard interaction unreliable in the task
header
> - This pull request makes both compact icon triggers real buttons and
keeps the existing picker behavior
> - The benefit is that operators can change status and priority
directly from the header with pointer or keyboard input

## Linked Issues or Issue Description

### Subsystem affected

`ui/` — React + Vite board UI.

### Problem or motivation

The compact status and priority icons can receive change handlers, but
their popover triggers are plain icon elements. They do not provide a
reliable click target, keyboard focus, or control label. Operators need
to change both values directly from the task header.

### Proposed solution

Use semantic button triggers in the shared status and priority
components. Keep the existing API update wiring and picker options. Keep
task-row navigation links separate from editable row controls. An
operator can select either icon, open its picker, and choose a new task
status or priority.

### Alternatives considered

A task-page-only wrapper would duplicate control behavior. Moving the
controls would also change the page layout. The shared components
already own the picker behavior, so a shared trigger fix is smaller and
more consistent.

### Roadmap alignment

This is a focused board UI usability and accessibility fix. It does not
duplicate a planned roadmap feature.

### Additional context

The task page already passes change handlers to these shared components.
This change makes that existing path interactive and accessible.

## What Changed

- Added semantic button triggers for compact and labeled status
controls.
- Added semantic button triggers for compact and labeled priority
controls.
- Added accessible current-state labels and keyboard focus styles.
- Separated issue-row navigation links from row controls to avoid nested
interactive elements.
- Added real popover interaction coverage and row semantics regressions.
- Added task-page regression tests for update requests.

## Verification

- Focused task-header and row suites passed with 131 tests.
- The final row, inbox, and picker regression suites passed with 83
tests.
- `pnpm --filter @paperclipai/ui exec tsc -b --force` passed.
- `pnpm run typecheck:build-gaps` reproduced the CI typecheck before the
fix. The forced UI build passed after the fix.
- `pnpm check:token-gates` passed.
- `pnpm -r typecheck` passed.
- `pnpm build` passed.
- `pnpm test:run` completed the server and UI partitions. One unrelated
CLI AWS doctor assertion saw injected static AWS credentials and
returned `warn` instead of `pass`. The exact test passed after those two
environment variables were removed.
- `git diff --check origin/master...HEAD` passed.
- All latest-head GitHub checks passed, including both e2e shards.
- Greptile passed at the required threshold with zero open review
threads.

## Risks

- The shared issue-row DOM now uses a full-area navigation link beside
native action buttons.
- Existing visual layout, pointer navigation, keyboard navigation, and
action behavior remain covered by row, inbox, and list tests.
- Read-only status and priority icon uses are unchanged.

> For core feature work, check [`ROADMAP.md`](ROADMAP.md) first and
discuss it in `#dev` before opening the PR. Feature PRs that overlap
with planned core work may need to be redirected — check the roadmap
first. See `CONTRIBUTING.md`.

## Model Used

- OpenAI Codex with the `gpt-5` model. The runtime did not expose its
context window size. The agent used reasoning, repository tools, code
execution, and GitHub CLI integration.

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have searched GitHub for duplicate or related PRs and linked
them above
- [x] I have either (a) linked existing issues with `Fixes: #` /
`Closes: #` / `Refs: #` OR (b) described the issue in-PR following the
relevant issue template
- [x] I have not referenced internal/instance-local Paperclip issues or
links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip`
URLs)
- [x] My branch name describes the change and contains no internal
Paperclip ticket id or instance-derived details
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [x] All Paperclip CI gates are green
- [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups
- [x] I will address all Greptile and reviewer comments before
requesting merge

---------

Co-authored-by: Paperclip <noreply@paperclip.ing>
canary/v2026.731.0-canary.11
2026-07-31 10:49:35 -07:00
b4a7a12985 feat: make recovery updates quieter (#10542)
## Thinking Path

> - Paperclip is the open source app people use to manage AI agents for
work
> - The recovery subsystem restores work after an agent run stops or
loses state
> - Recovery notices currently use the same visual weight as normal work
comments
> - Recovery agents can also post long narratives that obscure the
useful hand-off
> - The server must identify recovery output because agents cannot set
presentation controls
> - This pull request adds compact recovery notices, structured action
references, and brief recovery prompts
> - The benefit is a quieter issue thread that still keeps recovery
state inspectable

## Linked Issues or Issue Description

**Subsystem affected**

Cross-cutting: `server/`, `packages/shared`, and
`packages/adapter-utils`.

**Problem or motivation**

Recovery notices and recovery-run comments can dominate an issue thread.
Operators must scan routine recovery narration before they find the work
hand-off.

**Proposed solution**

Give routine recovery output a compact system-notice presentation.
Derive the presentation on the server so agents cannot hide arbitrary
comments. Keep the successful missing-state summary fully visible
because that comment is the recovery deliverable.

**Alternatives considered**

The UI could detect recovery text. That approach is fragile and does not
provide structured action references. Agents could also set presentation
directly, but that would weaken the current board-only security
boundary.

**Roadmap alignment**

This change refines the completed “Self-healing runs & automatic
recovery” and “Enforced Outcomes” roadmap areas. It does not add a
competing roadmap capability.

**Additional context**

The scope covers shared comment validation, server recovery notices,
agent-comment derivation, and recovery prompt text. No database
migration is needed because presentation data already uses JSON.

## What Changed

- Add the `compact` issue-comment presentation density to shared
constants, types, and validation.
- Give recovery escalation, waiting, and in-place notices compact titles
and structured recovery-action metadata.
- Use recovery-action metadata for notice deduplication, with the legacy
text marker as a compatibility fallback.
- Derive compact presentation for comments from recovery-scoped runs
while preserving the board-only presentation boundary.
- Keep successful missing-state recovery summaries fully visible.
- Ask recovery participants to record outcomes in `resolutionNote` and
keep source-issue comments brief.
- Add shared, route, service, and prompt tests for the new behavior and
exceptions.

## Verification

- `pnpm -r typecheck`
- Focused Vitest coverage: 320 tests passed across shared validators,
adapter prompts, issue comments, recovery actions, and heartbeat
recovery.
- Full server phase: 292 files passed, 3,094 tests passed, and 2 tests
skipped.
- Full UI phase: 386 files passed and 3,182 tests passed.
- `pnpm build`
- Known master baseline: `cli/src/__tests__/secrets.test.ts` expects
`pass`, but the current implementation returns `warn` when strict secret
mode is disabled for Postgres. This branch does not change CLI secrets
code.

## Risks

- Low migration risk. The presentation column is JSON and needs no
database migration.
- Recovery-run detection depends on the persisted run context snapshot.
- Structured metadata becomes the primary deduplication key. The
existing body marker remains as a fallback for older comments.

> For core feature work, check [`ROADMAP.md`](ROADMAP.md) first and
discuss it in `#dev` before opening the PR. Feature PRs that overlap
with planned core work may need to be redirected — check the roadmap
first. See `CONTRIBUTING.md`.

## Model Used

- OpenAI Codex with `gpt-5.6-sol`. The runtime did not expose the
context-window size. The model used agentic reasoning, repository tools,
code execution, and test execution.

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have searched GitHub for duplicate or related PRs and linked
them above
- [x] I have either (a) linked existing issues with `Fixes: #` / `Closes
#` / `Refs #` OR (b) described the issue in-PR following the relevant
issue template
- [x] I have not referenced internal/instance-local Paperclip issues or
links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip`
URLs)
- [x] My branch name describes the change (e.g. `docs/...`, `fix/...`)
and contains no internal Paperclip ticket id or instance-derived details
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [x] All Paperclip CI gates are green
- [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups
- [x] I will address all Greptile and reviewer comments before
requesting merge

---------

Co-authored-by: Paperclip <noreply@paperclip.ing>
Co-authored-by: Claude Opus 4.8 <noreply@anthropic.com>
canary/v2026.731.0-canary.10
2026-07-31 09:55:01 -07:00
Nicky LeachandPaperclip 131d476a7e fix(ci): make PR-template inline-description contract explicit (#10558)
## Thinking Path

> - Paperclip is the open source app people use to manage AI agents for
work
> - Contributors use the PR template to describe changes before review
> - The linked-issue gate reads literal template labels, not freeform
prose
> - The template did not state that rule, so a good prose summary could
fail on first submission
> - The gate also skipped two issue template paths that the PR template
already points to
> - This pull request makes the template and the gate match the same
contract
> - The benefit is that a good-faith author can pass the check on the
first try

## Linked Issues or Issue Description

No public issue exists.

Related public PR: #7762.

The problem is a mismatch between the PR template and the linked-issue
gate.
The template gave a bare placeholder and did not explain the
literal-label rule.
The gate also missed the enhancement and docs issue templates.

## What Changed

- Replaced the bare PR-template placeholder with labeled inline
skeletons for bug, feature, and adapter paths.
- Added one sentence that says the gate reads literal labels on separate
lines.
- Added the enhancement and docs issue template field sets to the
linked-issue gate.
- Added and updated tests for prose-only bodies, template skeleton
bodies, and extra issue template coverage.

## Verification

- `node --test .github/scripts/tests/check-pr-linked-issue.test.mjs`
- The branch contains one commit:
`561f1ed3a1434ed4562306f74d40968163ef1444`

## Risks

Low risk.
The three-field minimum stays in place.
The main change is clearer author guidance in the PR template.

## Model Used

OpenAI Codex, GPT-5, tool use.

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have searched GitHub for duplicate or related PRs and linked
them above
- [x] I have either (a) linked existing issues with `Fixes: #` /
`Closes: #` / `Refs: #` OR (b) described the issue in-PR following the
relevant issue template
- [x] I have not referenced internal/instance-local Paperclip issues or
links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip`
URLs)
- [x] My branch name describes the change and contains no internal
Paperclip ticket id or instance-derived details
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [x] All Paperclip CI gates are green
- [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups
- [x] I will address all Greptile and reviewer comments before
requesting merge

---------

Co-authored-by: Paperclip <noreply@paperclip.ing>
canary/v2026.731.0-canary.9
2026-07-31 09:46:26 -07:00
Nicky LeachandPaperclip 8c910b9a40 feat(daytona): activate the advisory bwrap wrapper at the execute seam (#10554)
## Thinking Path

> - Paperclip is the control plane for autonomous AI companies
> - Daytona runs code in a remote sandbox
> - The execute seam decides how agent commands run
> - The pure bwrap builder and the capability probes already merged in
#10541
> - This pull request activates the advisory bwrap wrapper at the
execute seam
> - The wrapper uses bwrap when the lease has the needed data and keeps
plain execution when wrap is not safe
> - The benefit is safer isolation without changing the current runtime
contract

## Linked Issues or Issue Description

- No public GitHub issue exists for this work.
- Related PR: #10541

Problem:
The Daytona execute seam can run commands without the advisory bwrap
wrapper when the lease does not yet provide the wrapper data.

Proposed solution:
Activate the advisory bwrap wrapper when the lease reports bwrap support
and a known uid or gid. Keep plain execution when wrap is not safe.

Alternatives:
- Always wrap every command. This can break current behavior and can
create root-owned files when the uid or gid is missing.
- Reject execution when bwrap is missing. This can fail a lease for a
best-effort wrapper and would change the current runtime contract.

Roadmap alignment:
This work fits the Cloud / Sandbox agents roadmap area.

## What Changed

- `executeOneShot` now accepts a bwrap execution plan.
- `onEnvironmentExecute` now reads the lease bwrap flags and the
writable sync paths.
- A helper resolves when the seam should wrap the command.
- The writable set now includes the workspace path and the collected
read-write sync destinations.
- The wrapper re-binds stdin after the fresh `/tmp` mount.
- The README explains the advisory wrapper behavior and the writable set
model.

## Verification

- `pnpm --filter @paperclipai/plugin-daytona exec vitest run
plugin.test.ts`
- `pnpm --filter @paperclipai/plugin-daytona exec tsc --noEmit`

## Risks

- A missing bwrap tool, a missing `sudo -n` rule, or a blocked user
namespace keeps plain execution.
- The change shifts the execute seam, so command setup needs careful
review.
- The wrapper is advisory, so it does not add a security boundary by
itself.

## Model Used

- OpenAI Codex, GPT-5, tool use, code execution.

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used with version and capability
details
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have searched GitHub for duplicate or related PRs and linked
them above
- [x] I have either linked existing issues or described the issue in
this PR
- [x] I have not referenced internal or instance-local Paperclip issues
or links
- [x] My branch name describes the change and contains no internal
Paperclip ticket id or instance-derived details
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [x] All Paperclip CI gates are green
- [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups
- [x] I will address all Greptile and reviewer comments before
requesting merge

---------

Co-authored-by: Paperclip <noreply@paperclip.ing>
canary/v2026.731.0-canary.8
2026-07-31 08:54:53 -07:00
Nicky LeachandPaperclip 70816c18e5 feat(daytona): add advisory bwrap command builder and capability probes (#10541)
## Thinking Path

> - Paperclip helps people manage AI agents for work
> - The Daytona sandbox provider needs a clear advisory wrapper path and
best-effort capability checks
> - The wrapper must not change the security model or block a lease when
the host lacks bubblewrap support
> - The lease metadata must carry the capability result so later steps
can make a stable choice
> - This pull request adds a pure command builder for the advisory
wrapper
> - This pull request adds non-throwing probes for bubblewrap and
sandbox uid or gid data
> - The benefit is a safer advisory path with no behavior change in the
execution seam

## Linked Issues or Issue Description

### Problem or motivation

The Daytona sandbox provider needs a clear advisory wrapper path and
best-effort capability checks.
The provider must not fail a lease when the host lacks bubblewrap
support.
The wrapper must stay advisory only.
It must not change the security model.

### Proposed solution

Add a pure command builder for the advisory wrapper and non-throwing
probes for bubblewrap and sandbox uid or gid data.
Store the probe result on the lease metadata so later steps can make a
stable choice.
Keep the execution seam unchanged.

### Alternatives considered

Do nothing and keep the current execution seam unchanged.
That path gives no signal when a file change is not durable.
This pull request adds the signal without changing runtime behavior.

### Roadmap alignment

This work fits the Daytona sandbox provider path and keeps the advisory
wrapper outside the execution seam.
It does not change the current security model.

### Additional context

The wrapper is advisory only.
It adds no security.
The read-only root is a feedback signal.

## What Changed

- Added `buildBwrapCommand` as a pure string builder for the advisory
wrapper command.
- Added `detectBwrapAvailable` and `detectSandboxUidGid` as best-effort
probes that never throw.
- Stored `bwrapAvailable`, `sandboxUid`, and `sandboxGid` on the lease
metadata in the acquire, resume, and probe hooks.
- Added a README section that describes the advisory wrapper model.
- Kept the execution seam unchanged.

## Verification

- `vitest run` for
`packages/plugins/sandbox-providers/daytona/src/plugin.test.ts`
- The run passed all 106 tests, including the new builder and probe
coverage.
- The standalone `tsc` run showed only the known baseline noise that
already exists on `master`.

## Risks

- Risk is low because the execution seam does not change.
- The new wrapper stays advisory and does not alter the sandbox security
model.
- The probe results only add metadata and do not fail the lease on
missing host support.

## Model Used

OpenAI Codex, GPT-5, tool use.

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used with version and capability
details
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have searched GitHub for duplicate or related PRs and linked
them above
- [x] I have either (a) linked existing issues with `Fixes: #` / `Closes
#` / `Refs #` OR (b) described the issue in-PR following the relevant
issue template
- [x] I have not referenced internal/instance-local Paperclip issues or
links
- [x] My branch name describes the change and contains no internal
Paperclip ticket id or instance-derived details
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [x] All Paperclip CI gates are green
- [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups
- [x] I will address all Greptile and reviewer comments before
requesting merge

---------

Co-authored-by: Paperclip <noreply@paperclip.ing>
canary/v2026.731.0-canary.7
2026-07-31 07:52:28 -07:00
Nicky LeachandPaperclip 4813ed3f0c fix(db): harden embedded Postgres test start with bounded retry (#10540)
## Thinking Path

> - Paperclip is the open source app people use to manage AI agents for
work
> - The database layer uses embedded Postgres for isolated test runs
> - A port probe can fail when another process takes the same port
before Postgres binds it
> - That race can make a test fail even when the code under test is fine
> - This pull request adds bounded retry and clearer error text to the
embedded Postgres start path
> - The benefit is more stable tests and faster diagnosis when startup
still fails

## Linked Issues or Issue Description

No public GitHub issue exists for this change.

This PR fixes a flaky embedded Postgres test start path.
The helper can lose a port between probe and bind.
This PR retries the start with a fresh port and a fresh data directory.

Related public context:
- Refs #7259
- Refs #9769

## What Changed

- Add bounded retry around embedded Postgres initialization and start.
- Stop each failed attempt and remove its data directory before the next
attempt.
- Capture Postgres output in the thrown error so the failure is easier
to read.
- Add unit coverage for retry success, retry exhaustion, and the
improved error text.

## Verification

- `pnpm --filter @paperclipai/db exec vitest run
src/test-embedded-postgres.test.ts src/embedded-postgres-error.test.ts`
- `pnpm --filter @paperclipai/db exec vitest run`
- `pnpm --filter @paperclipai/db exec vitest run` passed in the worktree
after the change.
- `worktree.test.ts > quarantines copied live execution state in seeded
worktree databases` passed.
- A real cluster loop of 100 starts passed with 0 failures.

## Risks

- The retry can hide a real startup fault until the fifth try.
- The bound keeps the wait short, and the final error still shows the
captured Postgres log.
- This change only affects the embedded Postgres test start helper.

## Model Used

OpenAI Codex, GPT-5, tool-use enabled.

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have searched GitHub for duplicate or related PRs and linked
them above
- [x] I have either (a) linked existing issues with `Fixes: #` /
`Closes: #` / `Refs: #` OR (b) described the issue in-PR following the
relevant issue template
- [x] I have not referenced internal/instance-local Paperclip issues or
links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip`
URLs)
- [x] My branch name describes the change (e.g. `docs/...`, `fix/...`)
and contains no internal Paperclip ticket id or instance-derived details
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [x] I have updated relevant documentation to reflect my changes
- [x] All Paperclip CI gates are green
- [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups
- [x] I will address all Greptile and reviewer comments before
requesting merge

Co-authored-by: Paperclip <noreply@paperclip.ing>
canary/v2026.731.0-canary.6
2026-07-30 22:22:31 -07:00
DottaandPaperclip 6a3cbe1c58 fix(ui): load the full selected timeline window (#9576)
## Thinking Path

> - Paperclip is the open source app people use to manage AI agents for
work
> - The timeline page visualizes company activity across a selected date
window
> - The UI requested only the first paginated issue batch even when the
selected zoom covered seven or thirty days
> - A busy company could therefore render an incomplete timeline while
the controls implied the full window was loaded
> - The timeline query needs to exhaust the API pagination for the
selected date range and combine each page without duplicating shared
timeline records
> - This pull request adds a paginated window loader, merges the
returned timeline data, and covers the multi-page behavior with a
regression test
> - The benefit is that the visible timeline matches the selected zoom
window instead of silently omitting later issues

## Linked Issues or Issue Description

### Pre-submission checklist

- [x] I searched existing open and closed issues and pull requests; no
matching report or implementation was found.
- [x] I reproduced the behavior against the pre-change `master`
implementation.
- [x] I confirmed the error originates in Paperclip's core timeline UI,
not an adapter, provider, or local configuration.

### What happened?

Selecting the default seven-day timeline range loaded only the first API
page (up to 500 issues). Companies with more activity therefore
displayed incomplete data even though the controls showed the full
selected window.

### Expected behavior

The timeline should load all issue pages that fall within the selected
date window.

### Steps to reproduce

1. Open the company timeline for a date range containing more than 500
issues.
2. Keep the default seven-day range or select another multi-day preset.
3. Observe that only the first page of issue-backed timeline data is
shown.

### Paperclip version or commit

Pre-change `master`.

### Deployment mode

Local dev source build. The behavior is not adapter-specific and is
independent of database mode and access context.

### Privacy checklist

- [x] No logs, configuration, personally identifiable information, or
user data are included.

## What Changed

- Added pagination parameters to the timeline API client contract.
- Added a timeline window loader that requests every issue page and
deduplicates actors, spans, events, and edges while preserving
pagination metadata.
- Switched the timeline query to use the complete-window loader.
- Added a regression test proving a 501-issue window loads both API
pages and combines their records.
- Preserved delegation events and edges when parent and child issues
fall on different API pages, with a server regression test.

## Verification

- `pnpm exec vitest run
server/src/__tests__/work-timeline-service.test.ts
ui/src/pages/Timeline.test.tsx` — 16 tests passed.
- `pnpm --filter @paperclipai/ui typecheck` — passed.
- `pnpm --filter @paperclipai/server typecheck` — passed.
- `pnpm check:token-gates` — all gates clean.
- `git diff --check origin/master...HEAD` — passed.
- Remote CI: build, typecheck, both e2e shards, canary, policy,
security, every general/serialized test shard, and the aggregate
`verify` gate passed on head `24784b28e9`.

## Risks

- Low risk: the change is isolated to timeline data loading and has no
schema or API endpoint changes.
- Large date windows now make sequential requests for all issue pages,
increasing request count for very active companies; the 500-item page
size bounds each response.
- Merged records rely on stable identifiers or composite event/edge
keys; the regression test covers cross-page combination and
deduplication behavior.

> For core feature work, check [`ROADMAP.md`](ROADMAP.md) first and
discuss it in `#dev` before opening the PR. Feature PRs that overlap
with planned core work may need to be redirected — check the roadmap
first. See `CONTRIBUTING.md`.

## Model Used

- OpenAI Codex using GPT-5.4 with reasoning, repository tool use, shell
execution, and test execution. The runtime does not expose the exact
context-window size.

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have searched GitHub for duplicate or related PRs and linked
them above
- [x] I have either (a) linked existing issues with `Fixes: #` / `Closes
#` / `Refs #` OR (b) described the issue in-PR following the relevant
issue template
- [x] I have not referenced internal/instance-local Paperclip issues or
links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip`
URLs)
- [x] My branch name describes the change (e.g. `docs/...`, `fix/...`)
and contains no internal Paperclip ticket id or instance-derived details
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [x] All Paperclip CI gates are green
- [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups
- [x] I will address all Greptile and reviewer comments before
requesting merge

---------

Co-authored-by: Paperclip <noreply@paperclip.ing>
canary/v2026.731.0-canary.5
2026-07-30 21:40:57 -07:00
Devin Foley dd1a7f5290 Ensure app-home ownership before the privilege drop, not only on remap (#10530)
## Thinking Path

> - Paperclip is the open source app people use to manage AI agents for
work
> - The Docker image persists all instance state (project checkouts,
worktrees, run logs, uploads) under `PAPERCLIP_HOME`, and deployments
mount a volume there for durability
> - The entrypoint starts as root and drops privileges to the `node`
user, but it fixes `PAPERCLIP_HOME` ownership only when it remaps the
user's UID/GID
> - A freshly mounted volume arrives root-owned and shadows the image's
build-time `chown`, so a default-UID boot drops privileges onto an
unwritable home and the server crashes on its first `mkdir`
> - This pull request makes the entrypoint probe the home's ownership
and chown whenever it does not match the runtime user, before the
privilege drop
> - The benefit is that the image works out of the box on any
platform-managed volume, with the common already-correct boot staying
chown-free

## Linked Issues or Issue Description

No public issue exists — describing the bug inline (per the bug report
template).

**What happened?**
Running the image with a freshly created volume mounted at `/paperclip`
(a Docker named volume, a Kubernetes PV, or any platform-managed volume)
and the default `USER_UID`/`USER_GID` crashes on boot: `Error: EACCES:
permission denied, mkdir '/paperclip/instances/default/logs'`.

**Expected behavior**
The container boots and initializes its instance tree on the mounted
volume, exactly as it does when `/paperclip` is the image's own
(build-time chowned) directory.

**Steps to reproduce**
1. `docker volume create paperclip-data`
2. `docker run -v paperclip-data:/paperclip
ghcr.io/paperclipai/paperclip:<any current tag>`
3. Observe the EACCES crash on the first `mkdir` under `/paperclip`.

**Root cause**
`scripts/docker-entrypoint.sh` chowns `/paperclip` only inside its
UID/GID remap branch (`changed=1`). A fresh volume mount is root-owned
and shadows the image's build-time `chown node:node /paperclip`; with
the default 1000:1000 no remap happens, so no chown happens, and `gosu
node` drops onto an unwritable home.

**Paperclip version or commit:** reproduces on `master` and any
published image.
**Deployment mode:** any; observed on managed-cloud volume mounts and
reproducible with plain Docker named volumes.
**Installation method:** Docker image (`ghcr.io/paperclipai/paperclip`).

**Related PRs (dedup search):** no open or merged PR touches the
entrypoint ownership logic; the entrypoint's privilege-handling tests
were added previously and this extends them. No duplicate found.

## What Changed

- `scripts/docker-entrypoint.sh`: the remap-conditional `chown` is
replaced by an ownership probe — after any UID/GID remap, the entrypoint
stats `PAPERCLIP_HOME` (default `/paperclip`) and runs `chown -R
node:node` only when the owner does not match the runtime user, before
`exec gosu node`. Covers fresh root-owned mounts and trees written under
a previous UID mapping; the already-correct boot performs no chown. The
unprivileged (non-root start) branch is unchanged.
- `server/src/__tests__/docker-entrypoint.test.ts`: `stat` stub added to
the harness; new cases for the fresh root-owned mount with default
UID/GID and for `PAPERCLIP_HOME`-relative probing; the remap case now
models the post-remap ownership mismatch.

## Verification

- `pnpm vitest run server/src/__tests__/docker-entrypoint.test.ts` — 7
passed (5 existing behaviors unchanged, 2 new).
- Live on a managed deployment: a container that crash-looped with the
EACCES above boots cleanly once the home is chowned before the drop (the
same effect this entrypoint change produces; forced there by a UID remap
as an interim workaround).

## Risks

- Low. Behavior changes only for boots where `PAPERCLIP_HOME` exists
with mismatched ownership — exactly the boots that crash today. `chown
-R` on a large previously-mismatched tree adds one-time boot latency;
correctly-owned homes skip it entirely. Kubernetes restricted /
OpenShift non-root starts keep the existing exec-directly path
untouched.

## Model Used

Claude Fable 5 (`claude-fable-5`, Anthropic; Claude Code CLI with
extended thinking and tool use; tests executed locally via Vitest).

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have searched GitHub for duplicate or related PRs and linked
them above (no duplicates; extends the existing entrypoint privilege
tests)
- [x] I have either (a) linked existing issues with `Fixes: #` / `Closes
#` / `Refs #` OR (b) described the issue in-PR following the relevant
issue template
- [x] I have not referenced internal/instance-local Paperclip issues or
links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip`
URLs)
- [x] My branch name describes the change (e.g. `docs/...`, `fix/...`)
and contains no internal Paperclip ticket id or instance-derived details
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [x] All Paperclip CI gates are green
- [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups
- [x] I will address all Greptile and reviewer comments before
requesting merge
canary/v2026.731.0-canary.4
2026-07-30 21:34:45 -07:00
Devin Foley 075951f6bd Fix import completion UX: inbox flood, false-failure message, stale company list (#10538)
## Thinking Path

> - Paperclip is the open source app people use to manage AI agents for
work
> - Company Import/Export (#10507, hardened in #10523 and #10531) now
imports a large company end to end via an async job
> - A real 1,418-issue import succeeded, but three rough edges showed up
in that success
> - Imported issues flooded the inbox, a completed import surfaced a
false "failed" message after its in-memory result expired, and the new
company didn't appear in the switcher until a manual refresh
> - This pull request keeps imported issues out of the inbox, treats an
expired-but-completed import as success, and refreshes the company list
on completion
> - The benefit is that a successful import looks and feels successful,
and doesn't bury the user's inbox in historical tasks

## Linked Issues or Issue Description

- Refs #10507 / #10523 / #10531 (Import/Export and its hardening). No
open issue; three post-import bugs described above.

## What Changed

- **Imported issues no longer flood the inbox.** The inbox "mine" tab is
a query: an issue is "touched" if the user authored a comment on it, and
import re-attributes bundled user comments to the importing user — so
every imported issue appeared. Import now seeds a per-user
`issue_inbox_archives` row for each imported issue (via a batched
`issues.archiveImportedInbox`), the exact table the inbox visibility
query excludes. Gated on an actor user id, so agent/system imports and
normal issue creation are untouched; genuine new activity still
resurfaces the issue.
- **A completed import no longer shows a false failure.** The in-memory
job's terminal retention was 5 minutes, so a poll after that 404'd and
the UI showed "failed." Retention is extended to 60 minutes — the real
mitigation for a user who steps away during a long import.
`watchImportJob` additionally treats a *server-confirmed* success whose
full result is no longer retained (a `succeeded` status carrying only
the compact summary — a cloud tenant job, or a board job whose full
in-memory result aged out) as a soft success ("import completed — open
the company"), navigating by the summary's company id. A 404 while the
job is still being watched is *not* treated as success: a running job is
never dropped by the retention sweep, so its disappearance means a
restart mid-import that may not have finished, and it surfaces the
honest "may have restarted while the import ran" error. A first-poll 404
(the id never existed) is likewise a real error.
- **The imported company appears without a refresh.** `onSuccess` now
invalidates the companies/switcher query unconditionally (covering both
the full-result and expired-but-completed paths) and navigates by the
job's company id.

## Verification

- shared/server/ui typechecks clean; 15 UI tests in the touched spec
green, plus the embedded-Postgres import batching and portability-routes
suites.
- New tests: embedded-Postgres test that imported touched issues are
archived for the actor and excluded from the inbox query while a
normally-created issue still appears; job resolvable at the old window+1
and only 404s past 60 min; UI soft success on a server-confirmed
`succeeded` job without a retained full result (no error, list
invalidated, navigates by company id), a running-then-gone job → honest
error (restart mid-import), and a first-poll 404 → error.

## Risks

- Low and import-scoped: the inbox archive only affects imported issues
for the importing user; normal issue creation and non-user
(agent/system) imports are unchanged. Retention extension is a constant;
the async job store remains in-memory by design. A restart mid-import
still 404s and is surfaced honestly as a possible failure (never masked
as success); only a server-confirmed success whose full result has
expired is reported as a soft success.

## Model Used

- Implementation: Claude Fable 5 (`claude-fable-5`, Anthropic). Review
hardening (the confirmed-success narrowing): Claude Opus 4.8
(`claude-opus-4-8`, Anthropic). Both via the Claude Code CLI with
extended thinking + tool use; root-caused against the live import.

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have searched GitHub for duplicate or related PRs and linked
them above
- [x] I have either (a) linked existing issues with `Fixes: #` / `Closes
#` / `Refs #` OR (b) described the issue in-PR following the relevant
issue template
- [x] I have not referenced internal/instance-local Paperclip issues or
links
- [x] My branch name describes the change and contains no internal
ticket id
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [ ] All Paperclip CI gates are green
- [ ] Greptile is 5/5 with no open P2s, recommendations, or follow-ups
- [x] I will address all Greptile and reviewer comments before
requesting merge
2026-07-30 21:33:02 -07:00
Nicky LeachandPaperclip 9f7565f4ce feat: activate OpenTelemetry spans on the sandbox start path (#10536)
## Thinking Path

> - Paperclip moves agent work through sandboxed execution and
control-plane services.
> - The sandbox start path now has a no-op span seam.
> - This change turns that seam on when OTLP export is configured.
> - It keeps the default path unchanged when export is off.
> - The result is structured startup traces with low-cardinality
attributes and explicit parent links.
> - The benefit is better observability without changing normal
behavior.

## Linked Issues or Issue Description

No public GitHub issue exists for this change.

### Problem
The sandbox start path has a tracer seam, but it stays a no-op unless
the OTLP export path is active.

### Proposed solution
Enable the server tracer on sandbox bring-up, open a root span, parent
each startup boundary to that root, and keep the export path opt-in
behind `OTEL_EXPORTER_OTLP_ENDPOINT`.

### Alternatives considered
- Keep the start path as a no-op. I rejected that path because it leaves
sandbox start opaque when OTLP export is already configured.
- Add broad attributes for commands and paths. I rejected that path
because the span allowlist must stay low-cardinality.

### Roadmap alignment
This follows the current OTel sandbox-start work and keeps the default
path unchanged.

## What Changed

- Add a root sandbox startup span and child spans for each named startup
boundary.
- Keep concurrent bridge spans parented to the root span.
- Inject the server tracer through the adapter deps without
OpenTelemetry imports in the engine.
- Attach host-received provider duration attributes only when the values
are finite.
- Keep span attributes inside the allowlist and keep command, path, id,
and error text out of span data.

## Verification

- The pushed branch already passed `pnpm --filter
@paperclipai/adapter-utils exec tsc --noEmit`.
- The pushed branch already passed `pnpm exec vitest run
packages/adapter-utils/src/acpx-engine/`.
- The pushed branch already passed `pnpm --filter @paperclipai/server
exec vitest run src/__tests__/environment-execution-target.test.ts
src/__tests__/instrumentation.test.ts`.
- The pushed branch already passed `pnpm --filter @paperclipai/server
exec tsc --noEmit`.

## Risks

- OTel export changes trace volume when the endpoint is set.
- The allowlist limits trace detail, so new fields need care.
- The change stays no-op when OTLP export is off.

## Model Used

- OpenAI GPT-5, tool use enabled.

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used with capability details
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have searched GitHub for duplicate or related PRs and linked
them above
- [x] I have either linked existing issues or described the issue in-PR
- [x] I have not referenced internal/instance-local Paperclip issues or
links
- [x] My branch name describes the change and contains no internal
ticket id or instance-derived details
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [x] All Paperclip CI gates are green
- [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups
- [x] I will address all Greptile and reviewer comments before
requesting merge

---------

Co-authored-by: Paperclip <noreply@paperclip.ing>
2026-07-30 21:20:58 -07:00
Nicky LeachandPaperclip 5cffd5c72e feat(sandbox): declare and collect the advisory read-write intent (#10521)
## Thinking Path

> - Paperclip is the control plane for AI agent companies
> - Sandbox providers move files between the host and the sandbox
> - The runtime needs advisory data for which sync paths are writable
> - The host already knows that intent when it prepares the sync map
> - Daytona can record that intent for later use
> - This pull request adds the advisory access field and collects
writable paths
> - The benefit is that later runtime work can use the data without
changing current flow

## Linked Issues or Issue Description

No public GitHub issue exists for this change. The description below
follows the feature-request template fields.

### Problem or motivation
An agent runs inside an ephemeral sandbox. Some sandbox paths keep agent
changes; other paths do not. Today the runtime has no declared signal
for which sync destinations the agent may change and keep. A later
feedback wrapper needs this signal to give the agent real-time feedback
when a write lands on a non-persistent path.

### Proposed solution
Add an optional advisory `access: "rw" | "ro"` field to the sync
file-mapping types. The host sets `rw` for the workspace, git-history,
and asset destinations, and `ro` for referenced-project trees. An absent
value defaults to `ro`. The Daytona provider collects the `rw` target
directories into a per-lease writable set for later use. This change
adds the metadata and the collection only. No execution path reads the
writable set yet, so runtime behavior does not change.

### Alternatives considered
Derive a static writable set in provider code. This alternative is
weaker: the layer that authors each sync destination already knows the
intent, so a per-operation declaration is more accurate and does not
hard-code a path list.

### Roadmap alignment
This is the first step toward an advisory sandbox feedback wrapper. The
wrapper is best-effort and adds no security. The ephemeral sandbox stays
the only boundary.

### Additional context
The field is advisory metadata. It does not change the file transfer and
adds no security.

## What Changed

- Added an optional `access` field to the sync file mapping types.
- Set the workspace, git history, and asset destinations to writable.
- Set referenced project destinations to read only.
- Added a writable set store in the Daytona provider.
- Recorded the parent directory of each writable sync mapping during
sync in.

## Verification

- The handoff reports these checks before push.
- `pnpm --filter @paperclipai/adapter-utils exec vitest run
sandbox-managed-runtime.test.ts`
- `pnpm --filter @paperclipai/plugin-sdk exec tsc --noEmit`
- `vitest run src/plugin.test.ts` in the Daytona package
- `tsc --noEmit` in the Daytona package

## Risks

- Low risk.
- The new field is advisory.
- The writable set store is best effort and in memory.
- A cold store falls back to the workspace baseline.

## Model Used

OpenAI Codex, GPT-5, tool use, code execution.

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used with version and capability
details
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have searched GitHub for duplicate or related PRs and linked
them above
- [x] I have either linked existing issues or described the issue in the
PR
- [x] I have not referenced internal or instance-local Paperclip issues
or links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip`
URLs)
- [x] My branch name describes the change and contains no internal
Paperclip ticket id or instance-derived details
- [ ] I have run tests locally and they pass
- [ ] I have added or updated tests where applicable
- [ ] I have updated relevant documentation to reflect my changes
- [ ] I have considered and documented any risks above
- [ ] All Paperclip CI gates are green
- [ ] Greptile is 5/5 with no open P2s, recommendations, or follow-ups
- [ ] I will address all Greptile and reviewer comments before
requesting merge

---------

Co-authored-by: Paperclip <noreply@paperclip.ing>
canary/v2026.731.0-canary.3
2026-07-30 21:20:13 -07:00
Devin Foley 5ec7ce76e5 Upload company import packages as compressed zip uploads (fix large-company imports through Cloud) (#10531)
## Thinking Path

> - Paperclip is the open source app people use to manage AI agents for
work
> - Company Import (#10507, hardened in #10523) lets a user upload a
company package on the Import page
> - The page expanded the user's `.zip` into a files map and POSTed it
as ONE inline JSON body — ~40MB for a real company because attachment
blobs get base64-inflated
> - On Paperclip Cloud that body travels browser → harness proxy →
tenant, where it truncated in transit → body-parser 400 → the browser
saw "Failed to fetch", and nothing imported
> - Two compounding causes: the giant inline body itself, and the board
async opt-in riding an `x-paperclip-cloud-*` header that the Cloud
harness strips as anti-spoofing (so async never engaged and the import
held one fragile synchronous connection)
> - This pull request uploads the raw compressed `.zip` as a multipart
request (about a third the size, already compressed) parsed server-side
into the same bundle the importer consumes, and moves the async opt-in
to a proxy-safe `?async=1`
> - The benefit is that a large-company import actually completes
through Cloud: a small compressed upload, a real async job that survives
dropped connections

## Linked Issues or Issue Description

- Refs #10507 / #10523 (Import/Export and its hardening). No open issue;
problem described above (large-company browser import through a proxy:
inline JSON body truncates → 400 → "Failed to fetch"; async opt-in
header stripped by the front door → async never engages).

## What Changed

- **Multipart zip transport.** The Import page uploads the raw `File` as
`multipart/form-data` (field `package`, import options in a JSON `meta`
field); the server unzips it into `{ rootPath, files }` and runs the
exact existing preview/import logic. The `application/json` inline path
is byte-identical for CLI/programmatic callers. Bare `application/zip`
(meta via `?meta=`) is also accepted for programmatic use.
- **Shared node zip reader.** `packages/shared/src/portability-zip.ts`
(node-only subpath, not re-exported to the browser bundle — same pattern
as `portability-hash.ts`); the CLI's `zip.ts` becomes a thin re-export.
Identical codec (STORE + DEFLATE via `inflateRawSync`, rejects data
descriptors/zip64).
- **Proxy-safe async signal.** `wantsAsyncImport` = `?async=1` (board
browsers, survives the harness) OR the existing
`x-paperclip-cloud-async-import` header (cloud tenants, set
server-side). The UI async client now uses `?async=1`. Backward
compatible.
- **Size + preflight.** New `PORTABLE_ZIP_UPLOAD_LIMIT_BYTES = 128MB`;
the inline 56MB preflight no longer gates the zip path (it shows the
compressed size instead). Async submit/poll/resume, the duplicate-guard
fingerprint (now over the resolved bundle), pause-on-import,
progress/error panels, and activation all apply to the multipart path.
- OpenAPI documents json + multipart + zip bodies and the `async` query
param.

## Verification

- Full typecheck chain (shared, server, ui, cli) clean.
- 152 tests across 8 files: new `portability-zip.test.ts`
(STORE/DEFLATE/base64-blob byte-exact round-trip, truncation throws,
data-descriptor rejection); `company-portability-routes.test.ts` +7
(multipart import+preview equals the inline bundle; async multipart
202→poll→success; board async via `?async=1` with no cloud header;
cloud-tenant async via header; sync fallback with neither; truncated-zip
400, nothing imported); `CompanyImport.test.tsx` asserts the local zip
sends the raw File and the inline preflight no longer blocks;
`openapi-routes.test.ts` green.
- NOT yet measured: the end-to-end browser upload through the live Cloud
harness — verified on staging after deploy before closing out.

## Risks

- Import semantics unchanged — only transport changed; the JSON inline
path is byte-identical, the cloud-tenant header async path untouched.
Multipart parsing is server-side (memory-bound: a ~13MB zip → ~30MB
files map, fine on the server).
- The bare `application/zip` path is programmatic-only and covered by
content-type dispatch but not a dedicated route test (the multipart path
is).

## Model Used

- Claude Fable 5 (`claude-fable-5`, Anthropic), Claude Code CLI,
extended thinking + tool use; root-caused against live logs/DB and the
harness proxy source.

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have searched GitHub for duplicate or related PRs and linked
them above
- [x] I have either (a) linked existing issues with `Fixes: #` / `Closes
#` / `Refs #` OR (b) described the issue in-PR following the relevant
issue template
- [x] I have not referenced internal/instance-local Paperclip issues or
links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip`
URLs)
- [x] My branch name describes the change and contains no internal
Paperclip ticket id or instance-derived details
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [ ] All Paperclip CI gates are green
- [ ] Greptile is 5/5 with no open P2s, recommendations, or follow-ups
- [x] I will address all Greptile and reviewer comments before
requesting merge
canary/v2026.731.0-canary.2
2026-07-30 18:48:22 -07:00
Nicky LeachandPaperclip 740554acc6 feat: add a no-op OpenTelemetry span seam for the sandbox startup path (#10522)
## Thinking Path

> - Paperclip helps people run and govern AI agent work
> - Sandbox startup needs a safe place to add telemetry spans without
forcing OpenTelemetry on every run
> - This change adds a no-op span seam, so the startup path can accept a
tracer later and still stay inert now
> - The server gets a lazy tracer accessor, and the adapter timing
helper gets an injected tracer hook
> - The change keeps the default path free of OpenTelemetry and keeps
the existing startup event path unchanged
> - The benefit is a future-safe seam with no runtime change today

## Linked Issues or Issue Description

This PR addresses a feature gap in the sandbox startup path.

### Problem

Sandbox startup has no safe span seam. A direct OpenTelemetry import
would load telemetry packages on every run.

### Proposed Solution

Add a lazy tracer accessor in the server. Add an injected no-op tracer
seam in startup timing.

### Alternatives

Import OpenTelemetry directly in the startup path. Reject that path
because the default startup flow must stay inert.

## What Changed

- Added a lazy startup tracer accessor in
`server/src/instrumentation.ts`.
- Added an injected startup tracer seam in
`packages/adapter-utils/src/acpx-engine/startup-timing.ts`.
- Kept the startup event path unchanged.
- Kept `adapter-utils` free of OpenTelemetry imports.

## Verification

- `pnpm exec vitest run
packages/adapter-utils/src/acpx-engine/startup-timing.test.ts`
- `pnpm exec vitest run server/src/__tests__/instrumentation.test.ts`
- `tsc --noEmit` for `@paperclipai/adapter-utils` and
`@paperclipai/server`

## Risks

Low risk. The default tracer is a no-op, so the runtime path stays inert
until a later change injects a real tracer.

## Model Used

OpenAI GPT-5. Tool use and code execution.

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used with version and capability
details
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have searched GitHub for duplicate or related PRs and found none
- [x] I have either (a) linked existing issues with `Fixes: #` /
`Closes: #` / `Refs: #` OR (b) described the issue in-PR following the
relevant issue template
- [x] I have not referenced internal or instance-local Paperclip issues
or links
- [x] My branch name describes the change and contains no internal
Paperclip ticket id or instance-derived details
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [ ] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [ ] All Paperclip CI gates are green
- [ ] Greptile is 5/5 with no open P2s, recommendations, or follow-ups
- [ ] I will address all Greptile and reviewer comments before
requesting merge

---------

Co-authored-by: Paperclip <noreply@paperclip.ing>
canary/v2026.731.0-canary.1
2026-07-30 18:23:44 -07:00
DottaandPaperclip 7cfb655f60 fix(worktree): disable automatic database backups (#10520)
## Thinking Path

> - Paperclip is the open source app people use to manage AI agents for
work
> - Paperclip creates isolated instances for linked git worktrees so
development does not affect the primary instance
> - Those instances inherited the source instance's automatic
database-backup setting and also repaired older configs without
overriding it
> - As worktrees accumulated, each isolated instance could schedule its
own backup stream, producing redundant backup churn for disposable
database clones
> - This pull request makes backup disablement an invariant of worktree
config creation and repair
> - The benefit is that automatic backups remain focused on the durable
primary instance while isolated development instances stop accumulating
redundant backup files

## Linked Issues or Issue Description

No public GitHub issue exists for this bug, so the report is included
here. The closest related open change is Refs #10266, which hardens
where worktree config repair may write; this PR changes the backup
policy applied by that repair and by worktree initialization.

### What happened?

Isolated worktree instances copied `database.backup.enabled` from their
source config. When the source instance enabled automatic backups (the
normal default), every linked worktree also enabled a scheduled backup
stream. Existing worktree configs kept that state during startup repair,
so the redundant backups continued after the policy changed.

### Expected behavior

Automatic database backups are disabled for isolated worktree instances
created by `paperclipai worktree init` or `paperclipai worktree:make`,
and legacy worktree configs are migrated to that policy during normal
startup repair. The durable primary/default instance keeps its existing
backup behavior.

### Steps to reproduce

1. Start from a Paperclip instance whose database backup setting is
enabled.
2. Create or initialize a linked worktree with `paperclipai worktree
init`.
3. Inspect the generated worktree config and environment.
4. Before this change, the config retained `database.backup.enabled:
true` and the environment had no disabling override; after this change,
the config is false and `PAPERCLIP_DB_BACKUP_ENABLED=false` is
persisted.

### Paperclip version, deployment mode, and environment

- Reproduced against `master` before commit `ea5e0a0269`.
- Deployment mode: local trusted development with linked git worktrees
and embedded PostgreSQL.
- Environment: Node.js 22, pnpm workspace install.

## What Changed

- Always generate isolated worktree configs with automatic backups
disabled.
- Persist `PAPERCLIP_DB_BACKUP_ENABLED=false` in generated worktree
environments.
- Repair existing isolated worktree configs and environments that still
enable backups.
- Add CLI and server regression coverage for creation and legacy repair
paths.
- Document the worktree-specific backup policy and primary-instance
exception.

## Verification

- `pnpm exec vitest run cli/src/__tests__/worktree.test.ts
server/src/__tests__/worktree-config.test.ts` — 52 tests passed.
- `pnpm -r typecheck` — passed.
- `pnpm build` — passed.
- All repository commands above were run with inherited worktree runtime
identity variables removed.

## Risks

- Low operational risk: the change is limited to explicitly isolated
worktree instances.
- Operators who intentionally relied on automatic backups of disposable
worktree databases will now need to run a manual backup or explicitly
manage those files outside the scheduled worktree runtime.
- No schema, migration, API, UI, lockfile, or workflow changes.

> For core feature work, check [`ROADMAP.md`](ROADMAP.md) first and
discuss it in `#dev` before opening the PR. Feature PRs that overlap
with planned core work may need to be redirected — check the roadmap
first. See `CONTRIBUTING.md`.

## Model Used

- OpenAI Codex based on GPT-5 (the runtime does not expose a more
specific snapshot ID or context-window value), using reasoning, tool
use, local code execution, and GitHub CLI integration.

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have searched GitHub for duplicate or related PRs and linked
them above
- [x] I have either (a) linked existing issues with `Fixes: #` / `Closes
#` / `Refs #` OR (b) described the issue in-PR following the relevant
issue template
- [x] I have not referenced internal/instance-local Paperclip issues or
links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip`
URLs)
- [x] My branch name describes the change (e.g. `docs/...`, `fix/...`)
and contains no internal Paperclip ticket id or instance-derived details
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [x] All Paperclip CI gates are green
- [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups
- [x] I will address all Greptile and reviewer comments before
requesting merge

---------

Co-authored-by: Paperclip <noreply@paperclip.ing>
canary/v2026.731.0-canary.0
2026-07-30 17:35:04 -07:00
Devin Foley 276ae3a75d Harden company import: durable UI, async jobs, integrity guard, batched inserts (#10523)
## Thinking Path

> - Paperclip is the open source app people use to manage AI agents for
work
> - Company Import/Export (#10507) moves whole companies between
instances as portability bundles
> - Real-world use on a large company (1,418 issues, ~10.6k comments)
surfaced a cluster of related failures: the import took hours and the
browser connection died while the server kept running, a retry silently
produced a second partial import, the progress/error UI gave no durable
signal, and a cloud-tenant user couldn't even open the companies
afterward
> - Root cause of the slowness: importBundle inserted every issue,
comment, and document as a separate round-trip to a network Postgres —
an N+1-over-network pattern
> - This pull request hardens the whole import path: durable
progress/error UI, an async server-side job so imports survive dropped
connections (with a duplicate-submit guard), a fail-closed guard against
incomplete payloads, and batched inserts that cut a large import from
hours to minutes
> - The benefit is that migrating a real, large company actually
completes, is legible while it runs, and can't half-import twice

## Linked Issues or Issue Description

- Refs #10507 (the Import/Export feature this hardens). Supersedes
#10513 (the progress/error-UI piece, folded in here). No open issue;
problem described above (large-company import: slow, connection-fragile,
silently duplicable, opaque UI).

## What Changed

- **Batched inserts (perf):** importBundle pre-generates entity ids in
JS and inserts in chunked multi-row statements, so children no longer
wait on parents' generated ids. A 1,418-issue import drops from ~15,600
insert statements to **82** (190×); benchmark below. Import semantics —
collision handling, pause-on-import,
label/blocker/monitor/attachment/embedded-asset handling, blob sha
verification — are unchanged (full portability suite green).
- **Async import jobs for board sessions:** the existing cloud-tenant
async job path opens to board sessions with per-actor job keys; the
import page submits, polls, and resumes watching after a reload or
dropped connection instead of holding one fragile request. A
non-terminal job blocks a duplicate submit (409 returns the running
job), preventing the double-import.
- **Fail-closed completeness guard:** an optional `expectedFileCount` on
inline imports; the server rejects (422 `import_payload_incomplete`) a
body carrying fewer files than declared, so a re-framed/short payload
fails loudly instead of half-importing.
- **Durable progress/error UI (was #10513):** persistent progress panels
with size-aware copy, persistent error panels with retry guidance, and
inline explanation when the preview button is disabled;
request-lifecycle guards so stale previews/imports can't publish or
detach.

## Verification

- `pnpm -r` typechecks (shared, server, ui) clean.
- `company-portability.test.ts` (76) +
`company-portability-routes.test.ts` (30) green — the import correctness
net — plus new `CompanyImport.test.tsx` async/resume/409 coverage and a
new batching regression test (a 50-issue import issues <50 issue-insert
statements; rows land unchanged).
- **Batching benchmark (embedded Postgres):** at 1,418 issues × 7
comments × 1 doc — 82 insert statements vs ~15,598 one-per-row (190×),
~1s wall-clock; a row-verifying run at that scale imports all 1,418
issues / 9,926 comments / 1,418 documents with unique identifiers and no
warnings (no rows dropped by chunking). Over a network DB the round-trip
reduction is the hours→minutes lever.
- What is NOT directly measured here: wall-clock against a real network
Postgres (that happens on a staging deploy); the local timing is
network-free.

## Risks

- Batching is the load-bearing change: it rewrites the import write
path. Mitigated by the unchanged 106-test correctness suite, a new
scale/row-integrity test, and per-writer transactions (a failure rolls
back its table group; not a single outer transaction across writers —
noted, correctness preserved).
- Async jobs are in-memory (lost on server restart → pollers 404 and can
resubmit); matches the pre-existing cloud-tenant job semantics.
- `expectedFileCount` is optional (older callers unaffected); over-count
is allowed, only under-count fails closed.

## Model Used

- Claude Fable 5 (`claude-fable-5`, Anthropic), Claude Code CLI,
extended thinking + tool use; implementation across Fable 5 subagents
with live diagnosis against a running instance.

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have searched GitHub for duplicate or related PRs and linked
them above
- [x] I have either (a) linked existing issues with `Fixes: #` / `Closes
#` / `Refs #` OR (b) described the issue in-PR following the relevant
issue template
- [x] I have not referenced internal/instance-local Paperclip issues or
links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip`
URLs)
- [x] My branch name describes the change and contains no internal
Paperclip ticket id or instance-derived details
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [ ] All Paperclip CI gates are green
- [ ] Greptile is 5/5 with no open P2s, recommendations, or follow-ups
- [x] I will address all Greptile and reviewer comments before
requesting merge
canary/v2026.730.0-canary.10
2026-07-30 16:52:58 -07:00
Devin Foley 1c52f02d34 Let cloud tenant sessions reach companies they hold memberships in (#10524)
## Thinking Path

> - Paperclip is the open source app people use to manage AI agents for
work
> - On Paperclip Cloud, each stack authenticates its users to the tenant
app through trusted headers (`resolveCloudTenantActor`), which seed a
primary company for the stack
> - That actor was pinned to exactly one company — the seeded primary —
regardless of any other companies the user actually holds a membership
in
> - Companies created later (via the import flow, or company creation)
write real membership rows for the user, but the pinned actor ignored
them, so those companies showed up in listings yet returned "User does
not have access to this company" when opened
> - This pull request unions the pinned primary with the user's own
active membership rows, exactly as a locally authenticated session
already does
> - The benefit is that a Cloud user can reach every company they belong
to — most visibly, a company they just imported

## Linked Issues or Issue Description

- Refs #10507 (Import/Export — imported companies were unreachable on
Cloud stacks). No open issue; bug described above (companies visible in
listing but unreachable; expected: reachable when the user holds an
active membership).

## What Changed

- Extracted the session path's own active-membership query into
`loadActiveUserCompanyMemberships(db, userId)` (single-sourced; the
session path now calls it too).
- `resolveCloudTenantActor` unions its result with the pinned primary:
`companyIds = [primary, ...others]`, memberships likewise, primary
first. Strictly per-user; a membership-read failure degrades to
primary-only (mirrors the existing fail-closed owner-elevation pattern).
No change to owner instance-admin elevation, grant seeding, the stale
instance-admin purge, or trusted-header validation.
- Grants are seeded at membership creation across all flows (company
create, invite/join, import), not per request — so no extra seeding was
added here.

## Verification

- `@paperclipai/server` typecheck clean.
- `cloud-tenant-actor.test.ts` (+ union / other-user-excluded /
inactive-excluded / no-rows-identical cases),
`auth-session-route.test.ts` (route-level: trusted headers reach a
unioned company through `assertCompanyAccess`), plus agent-auth,
authz-company-access, cross-company-authz, portability-routes — 83 tests
green.

## Risks

- Low and tightly scoped: only widens a Cloud actor's reachable
companies to those it already holds active memberships in; users without
extra memberships, other users' rows, and owner elevation are all
unaffected. Read failure fails closed to primary-only.

## Model Used

- Claude Fable 5 (`claude-fable-5`, Anthropic), Claude Code CLI,
extended thinking + tool use.

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have searched GitHub for duplicate or related PRs and linked
them above
- [x] I have either (a) linked existing issues with `Fixes: #` / `Closes
#` / `Refs #` OR (b) described the issue in-PR following the relevant
issue template
- [x] I have not referenced internal/instance-local Paperclip issues or
links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip`
URLs)
- [x] My branch name describes the change and contains no internal
Paperclip ticket id or instance-derived details
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [ ] All Paperclip CI gates are green
- [ ] Greptile is 5/5 with no open P2s, recommendations, or follow-ups
- [x] I will address all Greptile and reviewer comments before
requesting merge
canary/v2026.730.0-canary.9
2026-07-30 16:36:50 -07:00
DottaandPaperclip a5d252d058 feat(skills): add confirmed inbox gardening workflow (#10462)
## Thinking Path

> - Paperclip is the open source app people use to manage AI agents for
work.
> - Operators use the Mine inbox to track work that needs their
attention.
> - Old terminal work can make that inbox difficult to review.
> - Inbox cleanup must not change issues, branches, or workspaces.
> - Operators also need to approve each cleanup set before Paperclip
hides any item.
> - This pull request adds a garden-inbox skill with scan, confirmation,
and apply stages.
> - The benefit is a safe and repeatable inbox cleanup workflow with an
explicit undo path.

## Linked Issues or Issue Description

### Subsystem affected

Cross-cutting. This change adds an agent skill that calls existing
inbox, workspace, interaction, and archive APIs.

### Problem or motivation

Old terminal inbox entries can hide current work. Manual cleanup is slow
and can select the wrong entries. A single global result limit can also
hide rows from a large inbox.

### Proposed solution

Add a zero-dependency skill that classifies inbox rows, requests
checkbox confirmation, and archives only accepted rows for the current
user. Scan each relevant status separately, remove duplicate rows, and
report partial coverage if a status reaches its result limit.

### Alternatives considered

Automatic archive was rejected because it removes operator control. A
report-only tool was rejected because it does not complete the cleanup
workflow.

### Roadmap alignment

This is an agent skill. It does not add a new core product capability or
duplicate a planned roadmap item.

### Additional context

The apply stage changes only per-user inbox visibility. It provides the
archive API undo path for every successful item. A GitHub search found
no separate duplicate implementation; this pull request is the existing
result for the search terms.

## What Changed

- Added the `garden-inbox` skill workflow and command reference.
- Added a zero-dependency Node script with `scan`, `confirm`, and
`apply` commands.
- Added four exclusive classification buckets with machine-readable
reasons.
- Added per-status Mine scans, cross-status deduplication, and
partial-coverage reports for capped status results.
- Added chunked checkbox confirmations with deterministic idempotency
keys.
- Added strict accepted-option validation, per-item archive results, and
undo instructions.
- Added Node tests for classification, fail-safe inspection, accepted
selections, tampering, JWT decoding, URL normalization, and capped
scans.

## Verification

- Passed `node --check
.agents/skills/garden-inbox/scripts/garden-inbox.mjs`.
- Passed `node --test
.agents/skills/garden-inbox/scripts/garden-inbox.test.mjs`.
- Passed `pnpm -r typecheck` with inherited Paperclip runtime identity
variables removed.
- Passed `pnpm build` with inherited Paperclip runtime identity
variables removed.
- Ran `pnpm test:run`: 3,241 tests passed and 1 test skipped. One
unrelated current-base server integration assertion failed because it
received `heartbeat.scheduling_suppressed` instead of `issue_commented`
in `plugin-orchestration-apis.test.ts`. The exact test failed the same
way on one focused rerun. This pull request changes only
`.agents/skills/garden-inbox/**`.

## Risks

- Low risk. The skill is opt-in and does not change server or UI
behavior.
- `scan` and `confirm` do not mutate issues. `apply` only updates
per-user inbox archive visibility for accepted option IDs.
- API or workspace inspection failures keep items out of the archive
candidate set.
- A status result at the configured limit produces a visible
partial-coverage warning instead of claiming a complete scan.

> For core feature work, check [`ROADMAP.md`](ROADMAP.md) first and
discuss it in `#dev` before opening the PR. Feature PRs that overlap
with planned core work may need to be redirected. See `CONTRIBUTING.md`.

## Model Used

- OpenAI `gpt-5.6-sol` through the Codex local adapter. The runtime did
not expose the context window size. The model used high-reasoning
coding, shell, API, and code-execution tools.

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have searched GitHub for duplicate or related PRs and linked
them above
- [x] I have either (a) linked existing issues with `Fixes: #` / `Closes
#` / `Refs #` OR (b) described the issue in-PR following the relevant
issue template
- [x] I have not referenced internal/instance-local Paperclip issues or
links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip`
URLs)
- [x] My branch name describes the change (e.g. `docs/...`, `fix/...`)
and contains no internal Paperclip ticket id or instance-derived details
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [x] All Paperclip CI gates are green
- [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups
- [x] I will address all Greptile and reviewer comments before
requesting merge

---------

Co-authored-by: Paperclip <noreply@paperclip.ing>
2026-07-30 16:36:46 -07:00
SamandSami Rusani 39666aa906 fix(server): clarify execution policy decision comments (#9105)
## Thinking Path

> - Paperclip is the open source app people use to manage AI agents for
work.
> - Execution policies let issues move through enforced review and
approval stages before work is considered done.
> - Active reviewers and approvers must include decision rationale when
approving or requesting changes.
> - The server already requires the decision comment to arrive in the
same `PATCH /api/issues/:id` request as the status change.
> - When callers post a normal comment first and then send a status-only
`PATCH`, the existing 422 only says a comment is required.
> - This pull request keeps the atomic decision behavior but makes the
API error and docs explicit about the same-request requirement.
> - The benefit is that agents and API clients can recover immediately
by sending `{ status, comment }` together instead of dead-ending on an
ambiguous validation error.

## Linked Issues or Issue Description

Fixes #9049.

Duplicate/related search completed before implementation: searched open
PRs for `9049`, `Approving a review or approval stage requires a
comment`, `Requesting changes requires a comment`, and `same PATCH`. I
did not find a direct open PR for the same error-message/docs fix.
Related PRs found but not duplicates: #8302 documents cross-agent review
gates in the skill API reference, and #5487 covers human approval UI.

## What Changed

- Expanded execution-policy 422 messages for approve and request-changes
decisions to say the comment must be included in the same `PATCH`
request and prior comments are not considered.
- Tightened unit coverage so the comment-required branches assert the
new actionable guidance.
- Documented the same-request `{ status, comment }` decision shape in
the execution policy guide, issue API reference, and agent communication
guide.

## Verification

- `CI=true corepack pnpm --filter @paperclipai/server exec vitest run
src/__tests__/issue-execution-policy.test.ts --reporter verbose`
- `CI=true corepack pnpm --filter @paperclipai/plugin-sdk exec node
../../../scripts/ensure-plugin-build-deps.mjs`
- `CI=true corepack pnpm --filter @paperclipai/server exec tsc --noEmit`
- `git diff --check`

## Risks

Low risk. This does not change execution-policy state transitions or
relax the atomic decision guard; it only makes the existing requirement
explicit in errors and docs.

> For core feature work, check [`ROADMAP.md`](ROADMAP.md) first and
discuss it in `#dev` before opening the PR. Feature PRs that overlap
with planned core work may need to be redirected — check the roadmap
first. See `CONTRIBUTING.md`.

## Model Used

OpenAI Codex (GPT-5 Codex), operating in Codex desktop with repository
file access, shell validation, and GitHub CLI workflow. Exact context
window size is not surfaced by this environment.

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have searched GitHub for duplicate or related PRs and linked
them above
- [x] I have either (a) linked existing issues with `Fixes: #` / `Closes
#` / `Refs #` OR (b) described the issue in-PR following the relevant
issue template
- [x] I have not referenced internal/instance-local Paperclip issues or
links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip`
URLs)
- [x] My branch name describes the change (e.g. `docs/...`, `fix/...`)
and contains no internal Paperclip ticket id or instance-derived details
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [ ] All Paperclip CI gates are green
- [ ] Greptile is 5/5 with no open P2s, recommendations, or follow-ups
- [x] I will address all Greptile and reviewer comments before
requesting merge

Co-authored-by: Sami Rusani <sr@samirusani>
canary/v2026.730.0-canary.8
2026-07-30 16:26:35 -07:00
DottaandPaperclip fcf66f3a91 feat(skills): add managed skill rename API (#9688)
## Thinking Path

> - Paperclip is the open source control plane people use to manage
AI-agent companies.
> - Company skills are reusable capabilities that operators install,
edit, assign, and materialize for agents.
> - Managed local skills currently lack a safe backend operation for
changing their display name and canonical slug/key together.
> - Treating rename as an ordinary save can leave duplicate records,
stale runtime materializations, or agent assignments pointing at the old
key.
> - This pull request adds a company-scoped managed-skill rename
contract, service operation, and REST endpoint with focused
authorization and activity logging.
> - The benefit is an atomic-enough, recoverable rename path that keeps
disk state, database identity, and agent skill assignments synchronized.

## Linked Issues or Issue Description

- Refs #2121
- Problem: managed company skills need a dedicated rename operation
rather than save-time duplication behavior.
- Expected behavior: renaming a managed skill updates its name, slug,
key, source directory, frontmatter, runtime materialization, and
assigned-agent references while preserving version pins.

## What Changed

- Added shared request/result types and Zod validation for managed skill
rename requests.
- Added `POST /api/companies/:companyId/skills/:skillId/rename` with
`skills.edit` policy checks and `company.skill_renamed` activity
logging.
- Restricted renames to Paperclip-managed local skills and added slug,
key, and target-directory conflict handling.
- Moved the managed directory, rewrote only the `SKILL.md` frontmatter
name, updated the database row, and rolled filesystem changes back when
persistence fails.
- Rewrote assigned agents' desired-skill keys while preserving pinned
version IDs and removed stale runtime materialization.
- Added focused route and service coverage for success, no-op, name-only
changes, conflicts, unsupported sources, assignment rewrites,
rollback-sensitive behavior, and runtime cleanup.
- Rejected multiline rename names before they can inject extra
`SKILL.md` frontmatter fields.

## Verification

- `pnpm exec vitest run
server/src/__tests__/company-skills-service.test.ts
server/src/__tests__/company-skills-routes.test.ts` — 106 tests passed.
- `pnpm --filter @paperclipai/shared typecheck` — passed.
- `pnpm --filter @paperclipai/server typecheck` — passed.

## Risks

- Filesystem and database updates cannot share one native transaction;
the service stages filesystem changes and explicitly restores the
original directory and markdown when the database transaction fails.
- Renames intentionally reject catalog, remote, project-scanned, and
unmanaged local skills to avoid changing identities owned by external
sources.
- No database migration is required; the endpoint updates existing
company-skill and agent configuration fields.

> For core feature work, check [`ROADMAP.md`](ROADMAP.md) first and
discuss it in `#dev` before opening the PR. Feature PRs that overlap
with planned core work may need to be redirected — check the roadmap
first. See `CONTRIBUTING.md`.

## Model Used

- OpenAI Codex coding agent (exact underlying model ID and
context-window size were not exposed to this runtime), with reasoning,
repository tool use, code execution, and test execution. The rescued
source commit also records assistance from Claude Opus 4.8.

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have searched GitHub for duplicate or related PRs and linked
them above
- [x] I have either (a) linked existing issues with `Fixes: #` / `Closes
#` / `Refs #` OR (b) described the issue in-PR following the relevant
issue template
- [x] I have not referenced internal/instance-local Paperclip issues or
links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip`
URLs)
- [x] My branch name describes the change (e.g. `docs/...`, `fix/...`)
and contains no internal Paperclip ticket id or instance-derived details
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [x] All Paperclip CI gates are green
- [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups
- [x] I will address all Greptile and reviewer comments before
requesting merge

---------

Co-authored-by: Paperclip <noreply@paperclip.ing>
canary/v2026.730.0-canary.7
2026-07-30 15:29:31 -07:00
DottaandPaperclip efe8b3b707 feat(skills-catalog): add optional /simplified-english skill (#10410)
## Thinking Path

> - Paperclip is the open source app people use to manage AI agents for
work
> - Agents draw writing behavior from installable skills in the shipped
skills catalog (`packages/skills-catalog`)
> - Agent-authored comments, plans, and documents are often wordy or
ambiguous, which slows human readers
> - A small, opt-in skill can set a clear house style for user-facing
prose without touching agent code
> - This pull request adds an optional `simplified-english` catalog
skill that tells agents to write user-facing comments, plans, and
documents in ASD-STE100 Simplified Technical English
> - The benefit is shorter, unambiguous, one-meaning-per-sentence
writing that readers understand on the first pass

## Linked Issues or Issue Description

<!-- Feature request (no public GitHub issue). Described inline per
CONTRIBUTING.md → "Link Issues or Describe Them In-PR". -->

**Problem or motivation**

Agent-authored user-facing text (issue comments, plans, documents) is
frequently long-winded, uses inconsistent vocabulary, and packs multiple
instructions into one sentence. Readers have to re-read it. There is no
shared, installable house style for clear technical writing.

**Proposed solution**

Add an optional content skill, `simplified-english`, to the shipped
catalog. It instructs agents to write user-facing comments, plans, and
documents using only ASD-STE100 Simplified Technical English (short
sentences, one instruction each, approved single-meaning words, active
voice, present tense). Orgs opt in by installing it.

**Alternatives considered**

Baking the guidance into every agent's base instructions (too broad, not
opt-in) or a bundled skill (would apply everywhere by default). An
optional skill keeps it opt-in per org.

**Roadmap alignment**

Additive, opt-in catalog content only; no core behavior change.

## What Changed

- Add
`packages/skills-catalog/catalog/optional/content/simplified-english/SKILL.md`
— a short optional skill instructing agents to write user-facing
comments, plans, and documents in ASD-STE100 Simplified Technical
English. Includes an "Approved words" section that identifies the
controlled vocabulary (the ASD-STE100 Dictionary) and gives concrete
house-choice substitutions.
- Regenerate `packages/skills-catalog/generated/catalog.json` via
`build:manifest` so the manifest includes the new skill.
- Pin the new catalog key in
`packages/skills-catalog/src/shipped-catalog.test.ts`.

## Verification

- `pnpm --filter @paperclipai/skills-catalog build:manifest` → wrote
manifest with the new skill.
- `pnpm --filter @paperclipai/skills-catalog validate` → "Catalog
manifest is valid".
- `pnpm --filter @paperclipai/skills-catalog test` → the catalog
set/count/key pinning tests pass with the new skill included.
- Confirmed the generated entry: key
`paperclipai/optional/content/simplified-english`, trustLevel
`markdown_only`, description within the 300-char budget cap.

## Risks

Low risk. Additive, markdown-only optional skill plus a regenerated
manifest and a pinning-test update. No runtime code, migrations, or
workflow changes. Not installed by default (`defaultInstall: false`).

## Model Used

Claude Opus 4.8 (1M context), extended thinking, with tool use / code
execution.

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have searched GitHub for duplicate or related PRs and linked
them above
- [x] I have either (a) linked existing issues with `Fixes: #` / `Closes
#` / `Refs #` OR (b) described the issue in-PR following the relevant
issue template
- [x] I have not referenced internal/instance-local Paperclip issues or
links
- [x] My branch name describes the change and contains no internal
Paperclip ticket id
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [ ] All Paperclip CI gates are green
- [ ] Greptile is 5/5 with no open P2s, recommendations, or follow-ups
- [x] I will address all Greptile and reviewer comments before
requesting merge

---------

Co-authored-by: Paperclip <noreply@paperclip.ing>
canary/v2026.730.0-canary.6
2026-07-30 15:28:07 -07:00
Devin Foley 187a90b7bc Add opt-in in-flight run-log mirroring with graceful-shutdown flush (#10512)
## Thinking Path

> - Paperclip is the open source app people use to manage AI agents for
work
> - The run-log store records each agent run's output and can mirror
completed logs to S3-compatible object storage
> - The mirror uploads only on finalize, so a server restart mid-run
loses the whole in-flight log
> - Deployments and crashes are routine on ephemeral hosts, and lost run
output makes failed runs impossible to debug
> - This pull request adds an opt-in throttled mirror for still-running
logs plus a graceful-shutdown flush
> - The benefit is that a restart mid-run keeps the log tail up to the
last mirror interval, and an orderly restart keeps everything

## Linked Issues or Issue Description

No public issue exists — describing the feature inline (per the feature
request template).

**Subsystem affected**
server/ — REST API & orchestration services

**Problem or motivation**
`RUN_LOG_S3_BUCKET` gives finished run logs durability, but the mirror
uploads only on finalize. A run that is still writing when the server
restarts leaves nothing in object storage. On hosts with ephemeral disks
the local file is gone too, so the run's output is lost end to end and
failed runs cannot be debugged.

**Proposed solution**
Mirror the in-flight log to the same object key on a throttled cadence
(`RUN_LOG_S3_INFLIGHT_MIRROR_SECONDS`), and flush dirty tails during
graceful shutdown. Keep it opt-in so existing deployments see zero new
upload traffic unless they ask for it.

**Alternatives considered**
Per-append uploads (rejected: one PUT per output chunk is hostile to S3
endpoints and run latency). Chunked part objects with read-time
stitching (rejected: complicates the read path, and S3 multipart minimum
part sizes do not fit small tails). Persistent volumes (rejected
upstream already: the data dir is deliberately an emptyDir in hardened
cloud_tenant deployments).

**Roadmap alignment**
Not on ROADMAP.md; extends the existing run-log durability mirror
without changing any default behavior.

**Additional context**
Ranged reads already serve partial objects like a live tail, so the read
path needs no change; finalize overwrites the mirror with the complete
file.

**Related PRs (dedup search):** the finalize-only S3 mirror landed
previously and this extends it; no duplicate or competing PR found for
in-flight run-log mirroring.

## What Changed

- `server/src/services/run-log-store.ts`: new opt-in `inflightMirrorMs`
on the S3 options (`RUN_LOG_S3_INFLIGHT_MIRROR_SECONDS` env). When set,
appends schedule at most one upload of the current file per interval, to
the same key finalize uses. Ranged reads already serve that key, so a
partial object behaves like a live tail and needs no read-path change.
Finalize retires the in-flight bookkeeping and waits out an upload
already on the wire, so a stale partial can never overwrite a finalized
log. Upload failures warn, re-mark the tail dirty, and retry at most
once per interval.
- `server/src/services/run-log-store.ts`: new `flushInflightMirrors()`
on the store and a module-level `flushInFlightRunLogMirrors()` for the
shutdown path. Both are no-ops when the mirror is off.
- `server/src/index.ts`: graceful shutdown flushes dirty in-flight tails
after the heartbeat run drain, so runs the drain did not finalize
(timeouts, the hot-restart skip path) still persist their output.
- `server/src/services/run-log-store.test.ts`: five new tests —
off-by-default (no uploads before finalize), tail preserved after a wipe
without finalize, throttle coalescing with a single flush upload,
finalize superseding the in-flight mirror and retiring its timer, and
upload failures never breaking appends with recovery on the next flush.

## Verification

- `pnpm vitest run server/src/services/run-log-store.test.ts` — 13
passed (8 existing + 5 new).
- `pnpm vitest run server/src/__tests__/heartbeat-run-log.test.ts
server/src/__tests__/heartbeat-active-run-output-watchdog.test.ts` — 21
passed (consumers of the store, unchanged behavior).
- `pnpm -C server run typecheck` — clean.
- Self-hosted behavior is unchanged unless
`RUN_LOG_S3_INFLIGHT_MIRROR_SECONDS` is set: with the variable unset
there are zero new uploads and the finalize-only mirroring is
byte-identical (asserted by the off-by-default test).

## Risks

- Low. The feature is opt-in; unset env preserves today's behavior
exactly. When enabled, worst case is one extra PUT per interval per
active run, and every upload is best-effort — a failing endpoint warns
and never breaks appends, finalization, or shutdown. The finalize path
awaits any in-flight upload before writing the complete file, closing
the only overwrite race the design introduces. Timers are `unref`ed so
the mirror never keeps the process alive.

## Model Used

Claude Fable 5 (`claude-fable-5`, Anthropic; Claude Code CLI with
extended thinking and tool use; tests executed locally via Vitest).



## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have searched GitHub for duplicate or related PRs and linked
them above (no duplicates found for in-flight run-log mirroring; the
finalize-only mirror landed previously and this extends it)
- [x] I have either (a) linked existing issues with `Fixes: #` / `Closes
#` / `Refs #` OR (b) described the issue in-PR following the relevant
issue template
- [x] I have not referenced internal/instance-local Paperclip issues or
links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip`
URLs)
- [x] My branch name describes the change (e.g. `docs/...`, `fix/...`)
and contains no internal Paperclip ticket id or instance-derived details
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [x] All Paperclip CI gates are green
- [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups
- [x] I will address all Greptile and reviewer comments before
requesting merge
canary/v2026.730.0-canary.5
2026-07-30 14:01:02 -07:00
Devin Foley 916c13501f Replace host-to-host Cloud Sync with full-fidelity company Import/Export (#10507)
## Thinking Path

> - Paperclip is the open source app people use to manage AI agents for
work
> - A company accumulates real state — issues, labels, blockers,
documents, work products, monitors, attachments, agents, routines — and
people need to move that state between instances: self-hosted to cloud,
cloud back to self-hosted, or plain backups
> - The experimental, flag-gated Cloud Sync transport (#6548) tried to
solve this host-to-host: the source pushed into a receiver over HTTPS
with a cross-instance consent/token handshake, which required the
destination to be publicly reachable and broke for common self-hosted
topologies (plain-HTTP LAN/VPN origins); the receiver half never landed
upstream at all
> - Meanwhile the portability bundle and the existing export/import
pages already move companies offline with none of those networking
constraints — but silently dropped labels, blockers, issue documents,
work products, monitors, and every attachment
> - This pull request removes the host-to-host transport and makes
Import/Export the single data-movement path: the pages become
first-class company-settings destinations, exports declare exactly what
they do not carry, and bundle schemaVersion 6 now carries all of the
above, with attachments as content-addressed sha256 blobs verified
before a single row is written
> - The benefit is a migration and backup flow that works between any
two instances with no reachability requirements, no cross-instance auth,
and no silent data loss

## Linked Issues or Issue Description

- Refs #6548 — the original Cloud Sync sender this PR supersedes and
removes.
- Related, not duplicates: #1697 (goals in the portability manifest —
orthogonal field addition), #954 (an earlier import/export +
skill-visibility proposal predating the current portability bundle).
- No open issue describes this directly, so in brief (feature-request
shape): **Problem** — moving a company between instances silently lost
labels (imports with label references actually hard-failed), blocker
relations, issue documents, work products, monitor state, and all
attachments, and the alternative Cloud Sync transport required the
destination to be publicly reachable over HTTPS plus a consent
handshake, which failed for typical self-hosted setups. **Desired
behavior** — one Import/Export flow in company settings that produces a
portable bundle carrying all of that data, tells the operator up front
what it cannot carry, imports with automations paused, and offers real
one-click activation afterwards.

## What Changed

- New export fidelity report (`GET
/api/companies/:companyId/export/fidelity`) + an "Export fidelity" panel
on the Export page listing anything a bundle will not include (now only:
approvals, cost history, activity history)
- Imports accept `pauseAutomations`; imported agents and routines land
paused, the import result reports created routines, and the Import page
ends in an activation panel that actually resumes selected
agents/activates routines
- Export and Import pages promoted into the company-settings nav; the
Cloud Upstream wizard, ux-lab page, and API client removed; the old
settings route redirects to Export
- Host-to-host transport removed: upstream-sync/receiver-client routes
and services, CLI `cloud connect`/`cloud push` + keypair store, the
shared upstream transfer contract, and the `enableCloudSync` flag;
migration `0196` drops the two experimental `cloud_upstream_*` sender
tables
- Bundle schemaVersion 6: labels (definitions + per-task names, remapped
by name on import), blocker relations (`blockedBy` slugs,
cycle-tolerant), issue documents (`tasks/<slug>/documents/<key>.md`),
work products (system refs nulled), monitors (notes/scheduledBy
restored, imported un-armed)
- Attachments travel as content-addressed `blobs/<sha256>` entries
(deduped; comment-scoped attachments re-link via comment index); every
blob is hash-verified **before any write**, so a corrupted bundle cannot
leave a partially imported company; both zip codecs now round-trip
extensionless/binary entries byte-exactly; the Import page preflights
the inline body limit and offers continue-without-attachments
- v5 (and older) bundles still import, with an informational warning;
bundles newer than v6 are rejected cleanly
- Docs: board-operator import/export guide, CLI README, README/ROADMAP
updated

## Verification

- `pnpm -r` typechecks (shared, db incl. migration numbering/safety
checks, server, ui, cli) and `pnpm check:token-gates` — clean
- Vitest: full server + shared sweep 4,888 passed / 1 skipped, with the
only 3 failures being pre-existing on `master` (2×
heartbeat-workspace-branch-containment, 1× workspace-runtime auto-port;
reproduced identically with this change stashed); ui + cli suites green;
the embedded-Postgres export-fidelity suite applies the full migration
chain including the new `0196` against a fresh database
- Live end-to-end on a scratch instance: seeded a company with labels, a
blocker pair, an issue document, a work product, a monitor, an agent, a
routine, and two binary attachments (one comment-scoped) → export →
import into a fresh company → labels remapped to new ids, blocker edge
and document restored, monitor un-armed with notes intact, attachments
byte-identical (sha256-compared through the API), agents/routines paused
→ activation panel resumed them; a v5-shaped bundle imported with only
the info warning; flipping one byte in a blob made the import 422 with
**zero** rows created
- Reviewer repro: create a company with a labeled issue + attachment →
Settings → Export → download → Settings → Import on another
company/instance → watch the preview, apply with "start paused", then
activate

## Risks

- Migration `0196` drops
`cloud_upstream_connections`/`cloud_upstream_runs` — experimental tables
behind a default-off flag; their connection/run history is intentionally
discarded
- Breaking removals are all of experimental, flag-gated surface:
`/api/upstream-sync/*` + `/api/cloud-upstreams/*` routes, `paperclipai
cloud connect|push`, and the `enableCloudSync` flag (stale keys in
stored instance settings parse harmlessly)
- Import remains non-atomic on mid-apply errors generally (pre-existing
behavior); the new blob verification specifically moved ahead of all
writes so tampered bundles cannot create partial state
- GitHub-sourced imports do not fetch `blobs/*` and skip attachments
with a warning

## Model Used

- Claude Fable 5 (`claude-fable-5`, Anthropic), via Claude Code CLI with
extended thinking, tool use, and subagent orchestration; implementation
and review split across Fable 5 subagents, with live end-to-end
verification against a running instance

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have searched GitHub for duplicate or related PRs and linked
them above
- [x] I have either (a) linked existing issues with `Fixes: #` / `Closes
#` / `Refs #` OR (b) described the issue in-PR following the relevant
issue template
- [x] I have not referenced internal/instance-local Paperclip issues or
links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip`
URLs)
- [x] My branch name describes the change (e.g. `docs/...`, `fix/...`)
and contains no internal Paperclip ticket id or instance-derived details
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [ ] All Paperclip CI gates are green
- [ ] Greptile is 5/5 with no open P2s, recommendations, or follow-ups
- [x] I will address all Greptile and reviewer comments before
requesting merge
canary/v2026.730.0-canary.4
2026-07-30 11:37:00 -07:00
c62fa8d6a0 docs(agents): add create-paperclip-bundled-skill agent skill (#10477)
## Thinking Path

> - Paperclip is the open source app people use to manage AI agents for
work
> - Agents learn repeatable procedures through skills, and Paperclip
ships a curated skills catalog in `packages/skills-catalog`
> - People frequently send agents an idea, a tweet, or a task and ask
for it to become a catalog skill
> - Until now no written procedure existed for that flow, so each
attempt rediscovered the catalog rules (frontmatter fields,
`catalog-ref.json`, manifest regeneration, test expectations)
> - This pull request adds a repo agent skill that documents the full
find-or-make-and-publish procedure
> - The benefit is that any agent can turn source material into a
correct catalog pull request on the first pass

## Linked Issues or Issue Description

No public issue exists. Feature description: agents that maintain this
repository need a documented procedure to (a) research whether a
requested skill already exists, (b) add it to the skills catalog as a
local skill or a pinned external reference, (c) include worked examples,
and (d) regenerate the manifest and open a pull request. This change
adds that procedure as an agent skill. Related PR: #10410 (a catalog
skill addition that this skill uses as its worked example).

## What Changed

- Added `.agents/skills/create-paperclip-bundled-skill/SKILL.md`. It
documents: source capture (tweet fetch via the `xc` CLI or delegation),
a FIND-before-MAKE search order, kind/category/slug placement rules, the
`catalog-ref.json` external-reference format, local `SKILL.md` authoring
rules, `examples/` requirements, manifest regeneration,
`shipped-catalog.test.ts` expectation updates, and the PR procedure.
- Added
`.agents/skills/create-paperclip-bundled-skill/examples/new-local-skill.md`.
It is a worked example of the MAKE path, based on the simplified-english
catalog skill (#10410).
- Added
`.agents/skills/create-paperclip-bundled-skill/examples/external-reference.md`.
It is a worked example of the FIND path, based on the last30days
external reference that ships in the catalog today.

## Verification

- `pnpm --filter @paperclipai/skills-catalog test` — 20/20 tests pass.
This suite scans `.agents/**/SKILL.md` frontmatter, so it validates the
new skill's description budget.
- All statements about the catalog builder were checked against
`packages/skills-catalog/src/catalog-builder.ts` and the live artifacts
(`catalog/optional/research/last30days/catalog-ref.json`, PR #10410).

## Risks

- Low risk. The change adds three markdown files under
`.agents/skills/`. No runtime code changes.

## Model Used

- Claude Fable 5 (Anthropic, model ID `claude-fable-5`), agentic coding
session with tool use (file edits, shell, test runs).

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have searched GitHub for duplicate or related PRs and linked
them above
- [x] I have either (a) linked existing issues with `Fixes: #` / `Closes
#` / `Refs #` OR (b) described the issue in-PR following the relevant
issue template
- [x] I have not referenced internal/instance-local Paperclip issues or
links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip`
URLs)
- [ ] My branch name describes the change (branch name comes from the
managed execution workspace and cannot be renamed)
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable (no code paths
changed; existing frontmatter tests cover the new files)
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [ ] All Paperclip CI gates are green
- [ ] Greptile is 5/5 with no open P2s, recommendations, or follow-ups
- [x] I will address all Greptile and reviewer comments before
requesting merge

---------

Co-authored-by: Paperclip <noreply@paperclip.ing>
Co-authored-by: Claude Fable 5 <noreply@anthropic.com>
2026-07-30 07:40:33 -07:00
Nicky LeachandPaperclip d5b9f6c8c9 perf(sandbox): coalesce git-workspace stage-sync into one confined syncIn (#10488)
## Thinking Path

> - Paperclip is the open source app people use to manage AI agents for
work
> - Cloud and sandbox agents need less round-trip overhead at workspace
start
> - The workspace start path now uploads the git history and the working
tree overlay in two separate sync operations
> - That adds extra mkdir, guard, upload, and rename work for the same
workspace bytes
> - This pull request merges those two uploads into one guarded sync
operation
> - The benefit is one sync round trip for the workspace bytes with the
same guard and login-shell contract

## Linked Issues or Issue Description

No public GitHub issue exists for this change.

### Problem

A git-backed workspace start uploads the git-history clone and the
working-tree overlay as two separate host-to-sandbox sync operations.

### Proposed Solution

Merge the two uploads into one sync operation. Keep both tar mappings
under the same confinement guard. Run the git-history extract first,
then the overlay extract, then optional cleanup.

### Alternatives Considered

Keep two sync operations. That keeps the current round-trip cost and
duplicates the guard, upload, and rename work.

### Roadmap Alignment

This change supports the roadmap work on cloud and sandbox agents by
reducing workspace start overhead.

## What Changed

- Merge the git-history tar and the working-tree overlay tar into one
sync operation.
- Run the git-history extract first, then the overlay extract, then
optional remove-deleted-paths cleanup.
- Keep both temporary tar targets under the runtime directory so the
first extract cannot delete the second tar before use.
- Keep the symlink-escape guard, login-shell contract, and file-mapping
checks on the merged file set.

## Verification

- `tsc --noEmit` on `@paperclipai/adapter-utils`
- `@paperclipai/adapter-utils` full project test suite: 354 pass / 4
skipped
- Orchestrator proof: one merged operation with both tars and two
ordered extract commands
- Orchestrator proof: the confinement guard covers both tar mappings
- Daytona plugin `plugin.test.ts`: 94 pass

## Risks

- Any regression in the extract order could change workspace start
behavior.
- Any regression in the merged guard could block valid uploads or miss
an escape attempt.

## Model Used

OpenAI GPT-5, tool use enabled, current Codex session.

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have searched GitHub for duplicate or related PRs and linked
them above
- [x] I have either (a) linked existing issues with `Fixes: #` / `Closes
#` / `Refs #` OR (b) described the issue in-PR following the relevant
issue template
- [x] I have not referenced internal/instance-local Paperclip issues or
links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip`
URLs)
- [x] My branch name describes the change and contains no internal
Paperclip ticket id or instance-derived details
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [ ] All Paperclip CI gates are green
- [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups
- [x] I will address all Greptile and reviewer comments before
requesting merge

---------

Co-authored-by: Paperclip <noreply@paperclip.ing>
canary/v2026.730.0-canary.3
2026-07-29 23:31:57 -07:00
Nicky LeachandPaperclip 674d71548a perf(sandbox): fold dead sandbox start round trips (bridge dirs + handle-cache seed) (#10485)
## Thinking Path

> - Paperclip is the control plane for AI agents.
> - Sandbox startup uses bridge directories and a Daytona workspace
handle.
> - The cold path made repeat directory creation calls and one avoidable
handle fetch.
> - Those calls add delay but do not change state.
> - This pull request folds the bridge directory setup into one exec,
removes redundant process-session setup, and seeds the Daytona handle
cache at acquire.
> - The benefit is fewer deterministic host-to-sandbox round trips and
faster cold starts.

## Linked Issues or Issue Description

- Problem: Cold sandbox start does extra directory creation work and
re-fetches a handle it already has.
- Expected result: The startup path should create each directory once
and reuse the fresh handle.
- Related PRs I found on GitHub: #9280, #9293.

## What Changed

- Added `makeDirs` to the bridge queue client and used one `mkdir -p`
exec for the callback bridge directories.
- Removed the two upfront `mkdir` execs for the process-session bridge
stdin and events directories.
- Seeded the Daytona sandbox handle cache at acquire so realize can
reuse the fresh handle.
- Reset the process-scoped cache in the compatibility test so the second
sync run sees the expected exec count.

## Verification

- `pnpm --filter @paperclipai/adapter-utils exec vitest run` - 351
passed, 4 skipped.
- `pnpm --filter @paperclipai/sandbox-provider-daytona exec vitest run`
- 91 passed.
- `pnpm --filter @paperclipai/adapter-utils exec tsc --noEmit` - clean.
- I checked `ROADMAP.md` for sandbox round-trip work. I found no
duplicate planned core work for this change.

## Risks

- Low risk. The change removes redundant calls and adds cache seeding.
- A wrong cache scope would hide the handle. The seed now checks the
lease scope and fails loudly.
- The daytona package `tsc --noEmit` still depends on SDK types that are
not installed in this isolated workspace. CI covers that path.

## Model Used

- OpenAI GPT-5, tool-using, with code execution in the current
workspace.

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used with capability details
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have searched GitHub for duplicate or related PRs and linked
them above
- [x] I have either linked public issues or described the issue in-PR
- [x] I have not referenced internal or instance-local Paperclip issues
or links
- [x] My branch name describes the change and contains no internal
ticket id
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [x] All Paperclip CI gates are green
- [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups
- [x] I will address all Greptile and reviewer comments before
requesting merge

---------

Co-authored-by: Paperclip <noreply@paperclip.ing>
canary/v2026.730.0-canary.2
2026-07-29 22:23:45 -07:00
DottaandPaperclip a6436126ce feat(ui): add recency separators to task lists (#10454)
## Thinking Path

> - Paperclip is the open source control plane people use to manage AI
agents and their work
> - Project pages give operators a dense task list for understanding
what has changed recently
> - A purely chronological list makes the transition from fresh work to
aging work difficult to scan
> - The existing activity feed already uses a quiet labeled divider to
communicate a recency boundary
> - This pull request applies that familiar pattern to task lists at the
one-day and one-week boundaries
> - The benefit is faster age-based scanning without adding filters,
badges, or repeated metadata to every row

## Linked Issues or Issue Description

### Subsystem affected

`ui/` — React + Vite board UI.

### Problem or motivation

Operators scanning a project task list cannot quickly see where recently
created or updated work gives way to tasks that are more than a day or a
week old.

### Proposed solution

Insert subtle, accessible “Older than a day” and “Older than a week”
separators when a task list is sorted newest-first by creation or update
time.

### Alternatives considered

Per-row age badges would repeat state and add noise; persistent
age-based groups would interfere with the list's existing grouping
controls. Lightweight boundary markers preserve the current ordering and
interaction model.

### Roadmap alignment

This is a tightly scoped board-UI polish change and does not duplicate a
roadmap milestone.

### Additional context

The visual treatment follows the existing activity-feed recency
separator pattern. A public GitHub search found no duplicate or related
open issue or pull request.

## What Changed

- Added rolling one-day and one-week recency buckets for created/updated
timestamps.
- Rendered token-compliant, accessible separators only for newest-first
date sorts and only when visible rows cross a boundary.
- Traversed expanded nested rows in their exact visible order and
emitted every crossed boundary when adjacent rows skip an age bucket.
- Added component and helper coverage for sequential boundaries, skipped
buckets, expanded nested rows, and the no-separator same-bucket case.

## Verification

- `pnpm exec vitest run ui/src/components/IssuesList.test.tsx` — 42
tests passed.
- `pnpm check:token-gates` — all token gates clean.
- `pnpm --filter @paperclipai/ui typecheck` — passed.
- `pnpm --filter @paperclipai/ui build` — passed (with existing build
warnings only).

## Risks

- Low risk: the change is presentation-only and limited to list mode
when sorting `created` or `updated` descending.
- Boundaries use rolling 24-hour and 7-day windows rather than
calendar-day boundaries, matching the age-based labels.

> For core feature work, check [`ROADMAP.md`](ROADMAP.md) first and
discuss it in `#dev` before opening the PR. Feature PRs that overlap
with planned core work may need to be redirected — check the roadmap
first. See `CONTRIBUTING.md`.

## Model Used

- OpenAI Codex, GPT-5 family (the runtime did not expose a more specific
model build or context-window size), with reasoning, repository tool
use, code execution, and GitHub CLI access.

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have searched GitHub for duplicate or related PRs and linked
them above
- [x] I have either (a) linked existing issues with `Fixes: #` / `Closes
#` / `Refs #` OR (b) described the issue in-PR following the relevant
issue template
- [x] I have not referenced internal/instance-local Paperclip issues or
links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip`
URLs)
- [x] My branch name describes the change (e.g. `docs/...`, `fix/...`)
and contains no internal Paperclip ticket id or instance-derived details
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [ ] All Paperclip CI gates are green
- [ ] Greptile is 5/5 with no open P2s, recommendations, or follow-ups
- [x] I will address all Greptile and reviewer comments before
requesting merge

---------

Co-authored-by: Paperclip <noreply@paperclip.ing>
canary/v2026.730.0-canary.1
2026-07-29 18:04:36 -07:00
DottaandPaperclip 24aa2f516d feat(ui): add animated paperclip page loaders (#10456)
## Thinking Path

> - Paperclip is the open source control plane people use to manage AI
agents for work
> - Operators regularly pass through full-page loading states while
authentication and company context resolve
> - Those states currently render as small bare text, which is easy to
miss and does not reinforce Paperclip's visual identity
> - A shared loading component gives these transitions one accessible,
consistent representation
> - This pull request introduces an animated paperclip loader and uses
it at the existing full-page loading boundaries
> - The benefit is a clearer, calmer loading experience with
reduced-motion and screen-reader support

## Linked Issues or Issue Description

### Subsystem affected

`ui/` — React + Vite board UI

### Problem or motivation

Full-page authentication, access-gate, and company-context waits use
small bare `Loading…` text that is visually weak and inconsistent.

### Proposed solution

Use one large centered paperclip loader at those boundaries, drawing the
SVG with `currentColor` so it follows the active theme.

### Alternatives considered

Keeping text-only states or adding a generic spinner would preserve less
of Paperclip's product identity and would continue duplicating loading
markup.

### Roadmap alignment

This is tightly scoped UI polish and does not duplicate a planned
roadmap capability.

### Additional context

Internal coordination task PAP-15760 requested this focused change.

## What Changed

- Added `AnimatedPaperclipIcon`, a theme-aware SVG whose stroke draws in
a loop.
- Added `PaperclipLoading`, a large full-viewport centered loader with
`role="status"` and an `sr-only` `Loading…` label.
- Added a static fully drawn fallback under `prefers-reduced-motion:
reduce`.
- Replaced bare loading text in `CloudAccessGate`, the Auth session
check, and three company-context redirects.
- Used token-safe Tailwind utilities throughout the component.
- Added focused coverage for the status semantics and the Auth layout
height override.

## Verification

- `pnpm check:token-gates`
- `pnpm -C ui exec tsc -b`
- `pnpm -C ui exec vitest run
src/components/AnimatedPaperclipIcon.test.tsx`
- `pnpm -C ui exec vitest run src/App.test.tsx
src/App.cases-routing.test.tsx` — 8/8 tests passed
- Visually checked light and dark loading states; the screenshot below
shows both themes.

![Large centered paperclip loading state in light and dark
themes](https://pages.paperclip.ing/pap-15760-loading-state/pap15760-loading.png)

## Risks

- Low risk: this changes presentation only at existing loading branches.
- Motion-sensitive users receive a static, fully drawn paperclip through
the reduced-motion media query.
- Screen readers retain a concise loading announcement through the
status role and visually hidden label.

> For core feature work, check [`ROADMAP.md`](ROADMAP.md) first and
discuss it in `#dev` before opening the PR. Feature PRs that overlap
with planned core work may need to be redirected — check the roadmap
first. See `CONTRIBUTING.md`.

## Model Used

- OpenAI Codex, GPT-5 (exact service build ID and context-window size
are not exposed in this environment), with reasoning, repository
inspection, shell tool use, code execution, and image inspection.

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used with all deployment details
available to this environment
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have searched GitHub for duplicate or related PRs and found none
- [x] I have described the issue in-PR following the feature-request
fields
- [x] I included the task-mandated internal parent reference and no
private instance URL
- [x] I preserved the task-mandated existing branch name without
renaming it
- [x] I have run scoped tests locally and they pass
- [x] I added focused component coverage for the new loading state
- [x] No documentation update is required for this presentation-only
change
- [x] I have considered and documented the risks above
- [x] All Paperclip CI gates are green
- [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups
- [x] I will address all Greptile and reviewer comments before
requesting merge

Co-authored-by: Paperclip <noreply@paperclip.ing>
2026-07-29 17:58:50 -07:00
Nicky LeachandPaperclip a93a74f91a feat(server): surface referenced-project sync warnings and enable multi-project sync by default (#10473)
## Thinking Path

> - Paperclip helps people manage AI agent work for a company
> - Workspace sync must keep one primary path and any referenced project
paths in step
> - A partial sync must not fail in silence
> - Operators also need a clear signal when the feature uses the new
default path
> - This pull request surfaces referenced-project warnings on the run
and turns the feature flag default on
> - The benefit is better visibility and a live multi-project sync path
by default

## Linked Issues or Issue Description

This pull request completes the multi-project workspace sync go-live
work.

Related pull requests:

- Refs: #10380
- Refs: #10448
- Refs: #10469

## What Changed

- Surface referenced-project warnings on the run when a project drops
during authorization or resolution.
- Record a structured failure reason for each dropped referenced
project.
- Emit one structured log line at run preparation with the requested
count, the synced count, and the failure reasons.
- Flip the workspace sync kill-switch default to on when the env value
is unset.
- Keep the primary workspace path unchanged.

## Verification

- `tsc --noEmit` passed in the server package.
- `heartbeat-referenced-projects.test.ts` and
`heartbeat-project-env.test.ts` passed.
- `workspace-runtime.test.ts` passed.
- `adapter-utils` runtime tests passed for sandbox, command, remote, and
file sync paths.

## Risks

- The new default can expose the feature to more runs if an operator
does not set the env override.
- The new surfaced warnings can change operator visible run output.
- The structured log line can add noise if a run has many referenced
project failures.

## Model Used

- OpenAI Codex, GPT-5, tool use, large context window.

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used with version and capability
details
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have searched GitHub for duplicate or related PRs and linked
them above
- [x] I have either linked existing issues with `Fixes: #` / `Closes #`
/ `Refs #` or described the issue in-PR following the relevant issue
template
- [x] I have not referenced internal or instance-local Paperclip issues
or links
- [x] My branch name describes the change and contains no internal
Paperclip ticket id or instance-derived details
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [x] All Paperclip CI gates are green
- [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups
- [x] I will address all Greptile and reviewer comments before
requesting merge

---------

Co-authored-by: Paperclip <noreply@paperclip.ing>
canary/v2026.730.0-canary.0
2026-07-29 17:12:22 -07:00
Nicky LeachandPaperclip 6a267e0328 feat(sandbox): stage referenced projects into the run sandbox (#10469)
## Thinking Path

> - Paperclip is the open source app people use to manage AI agents for
work
> - Runs can reference more than one project
> - Each referenced project must land in its own sandbox tree so one run
does not mix files across projects
> - The anchor workspace must keep its own git history and overlay rules
> - Fail closed on sync and confinement errors, and keep the other
projects alive
> - This pull request stages referenced projects into isolated project
directories under the run sandbox root
> - The benefit is safer multi-project runs with clear failure isolation

## Linked Issues or Issue Description

No public issue exists.

Related PR: #10448.

## What Changed

- Thread additional referenced-project sources through the run prepare
path and the runtime layers.
- Stage each referenced project into its own `project-<projectId>`
directory under the runtime root.
- Keep the anchor workspace history and overlay semantics unchanged.
- Fail closed on confinement or sync errors for one project, and keep
the other projects running.
- Keep the path inert by default behind the multi-project workspace-sync
kill-switch.
- No documentation update was needed for this code-only runtime change.

## Verification

- `pnpm --filter @paperclipai/adapter-utils exec vitest run
src/sandbox-file-sync.test.ts src/command-managed-runtime.test.ts
src/sandbox-managed-runtime.test.ts src/remote-managed-runtime.test.ts`
- `pnpm --filter @paperclipai/adapter-utils exec tsc --noEmit`
- The branch points at `871378e4064a95adc8e4647e442ec1359768de61` on
`origin/feat/stage-referenced-projects-into-sandbox`.
- GitHub CI is green on PR #10469.

## Risks

- A referenced project can skip if confinement or sync fails.
- A new runtime tree layout can affect tools that assume one project
root.
- The kill-switch keeps the path inert until operators enable it.

## Model Used

OpenAI Codex, GPT-5, tool use enabled.

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have searched GitHub for duplicate or related PRs and linked
them above
- [x] I have either (a) linked existing issues with `Fixes: #` / `Closes
#` / `Refs #` OR (b) described the issue in-PR following the relevant
issue template
- [x] I have not referenced internal/instance-local Paperclip issues or
links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip`
URLs)
- [x] My branch name describes the change (e.g. `docs/...`, `fix/...`)
and contains no internal Paperclip ticket id or instance-derived details
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [x] I have updated relevant documentation to reflect my changes or
confirmed no docs update was needed
- [x] I have considered and documented any risks above
- [x] All Paperclip CI gates are green
- [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups
- [x] I will address all Greptile and reviewer comments before
requesting merge

---------

Co-authored-by: Paperclip <noreply@paperclip.ing>
canary/v2026.729.0-canary.13
2026-07-29 16:09:57 -07:00
Devin FoleyandPaperclip 5c5366d0c1 fix(server): honor explicit plugin RPC timeouts (#10460)
## Thinking Path

> - Paperclip is the open source app people use to manage AI agents for
work.
> - Plugin workers connect Paperclip to external runtimes and sandbox
providers.
> - Some adapter heartbeats run a full sandbox session inside one
`environmentExecute` RPC.
> - The worker manager limited every RPC timeout to 15 minutes, even
when the caller gave a longer timeout.
> - This pull request keeps the normal default timeout behavior but
honors explicit caller timeouts.
> - The benefit is that long sandboxed agent sessions can continue past
15 minutes while other safety guards still bound hung work.

## Linked Issues or Issue Description

No public GitHub issue exists for this bug.

### Bug Report

Pre-submission checklist:
- Searched existing open and closed issues and did not find a duplicate.
- Confirmed the bug is reproducible on `master` from the current source
tree.
- Confirmed the error starts in Paperclip timeout handling, not in an
adapter provider or local configuration.

What happened?
- A sandbox-backed adapter heartbeat can run a full agent session inside
one `environmentExecute` plugin RPC.
- The plugin worker manager capped every RPC timeout at 15 minutes.
- The cap also applied when the caller passed a longer explicit timeout
for an execute-style call.
- A long sandbox command could fail before the adapter budget expired.

Expected behavior:
- Ordinary plugin RPC calls should keep the normal 30-second default
timeout.
- The default timeout path should still have a 15-minute maximum.
- A caller-supplied positive finite timeout should be honored, including
values above 15 minutes.

Steps to reproduce:
1. Use a plugin environment driver that calls `environmentExecute` with
an explicit timeout above 15 minutes.
2. Run a command that stays active longer than 15 minutes and remains
inside the adapter budget.
3. Observe that the worker manager times out the RPC at 15 minutes
before this fix.
4. Run the same path after this fix and observe that the explicit
timeout is used.

Paperclip version or commit:
- Reproduced from the current `master` line before this change.

Deployment mode:
- Local dev or self-hosted server with sandbox-backed execution.

Installation method:
- Built from source.

Agent adapter(s) involved:
- Codex.
- Custom or external plugin adapter.
- Core plugin worker timeout handling.

Database mode:
- Not database-related.

Access context:
- Agent execution context.

Node.js version:
- Not version-specific.

Operating system:
- Not OS-specific.

Relevant logs or output:
```shell
RPC call "environmentExecute" timed out after 900000ms
```

Relevant config:
- Not config-related.

Additional context:
- Execute-style sandbox calls already have adapter inactivity monitors,
platform silent-run checks, and provider command timeouts. This PR
removes the unintended worker-manager clamp only for explicit positive
finite caller timeouts.

Privacy checklist:
- Reviewed all pasted output for PII, user paths, API keys, tokens,
company names, and internal instance links.

Duplicate search:
- Searched open PRs and open issues in `paperclipai/paperclip` for
`environmentExecute timeout`, `MAX_RPC_TIMEOUT_MS`, and
`plugin-worker-manager timeout`.
- Searched the same terms in `HenkDz/paperclip`.
- Found no matching open PRs or issues.
- Compared this patch-id against my open PRs in `paperclipai/paperclip`;
no match was found.

## What Changed

- Added `resolveRpcCallTimeoutMs()` to keep explicit positive finite
timeouts intact.
- Kept the 15-minute maximum only for the default timeout path.
- Updated `callInternal()` to use the new resolver.
- Added unit tests for explicit long timeouts, default timeout clamping,
fractional values, and invalid explicit values.
- Clarified why notification invocation scopes still use the 15-minute
TTL.

## Verification

- `corepack pnpm install --frozen-lockfile`
- `corepack pnpm --filter @paperclipai/plugin-sdk ensure-build-deps`
- `corepack pnpm --filter @paperclipai/server exec vitest run
src/__tests__/plugin-worker-manager.test.ts`
- `corepack pnpm --filter @paperclipai/server exec tsc --noEmit`
- `git diff --check 9574cad3e8 HEAD`
- GitHub PR checks on `bf7bfd0d`: all passing; Storybook visual
regression skipped by workflow.
- Greptile on `bf7bfd0d`: 5/5, no blocking failure remains; prior P2
thread resolved.

## Risks

Low risk. The change affects RPC timeout resolution in the plugin worker
manager. Ordinary plugin calls still use the 30-second default and the
default path is still capped at 15 minutes. Callers that pass explicit
long timeouts now own that budget. Adapter inactivity monitors and
platform silent-run safety checks still bound hung runs.

## Model Used

OpenAI Codex, GPT-5-based coding agent, with shell and GitHub CLI tool
use.

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have searched GitHub for duplicate or related PRs and linked
them above
- [x] I have either (a) linked existing issues with `Fixes: #` / `Closes
#` / `Refs #` OR (b) described the issue in-PR following the relevant
issue template
- [x] I have not referenced internal/instance-local Paperclip issues or
links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip`
URLs)
- [x] My branch name describes the change (e.g. `docs/...`, `fix/...`)
and contains no internal Paperclip ticket id or instance-derived details
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [x] All Paperclip CI gates are green
- [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups
- [x] I will address all Greptile and reviewer comments before
requesting merge

---------

Co-authored-by: Paperclip <noreply@paperclip.ing>
canary/v2026.729.0-canary.12
2026-07-29 14:27:23 -07:00
Nicky LeachandPaperclip 15ce70dc18 feat(server): thread plural referenced-project workspaces through run prep (#10448)
## Thinking Path

> - Paperclip coordinates work for autonomous companies.
> - A run needs a workspace view before execution starts.
> - That view now needs to cover one anchor project and more referenced
projects.
> - Those extra workspaces must stay separate and must not change the
anchor path when the feature stays off.
> - This PR threads plural workspace data through run prep behind a
default-off kill switch.
> - It also keeps extra project workspaces isolated and makes the
realization contract round-trip the new shape.
> - The benefit is safer run prep for referenced projects without
changing the current default path.

## Linked Issues or Issue Description

This PR does not link a public GitHub issue.
It follows the internal run-prep task for plural referenced-project
workspaces.

Problem:
- Run prep resolves the anchor project today, but it does not yet carry
each referenced project into the run workspace view.
- That gap blocks runs that need a second repo or sibling project during
preparation.

Proposed solution:
- Thread a plural workspace result through run prep.
- Keep the anchor path unchanged when the kill switch is off.
- Resolve each referenced project into its own managed checkout
directory when the flag is on.

Alternatives considered:
- Keep one shared workspace and layer the extra repos into it. Rejected
because it would blur isolation and make failures harder to bound.
- Upload the extra workspaces immediately. Rejected because this PR only
prepares the data path.

Roadmap alignment:
- This change sits in the workspace and sandbox path.
- It matches the roadmap work on workspace strategy and cloud or sandbox
agents.

## What Changed

- Added `additionalWorkspaces[]` to the run workspace result.
- Split workspace resolution into an anchor path and an optional
referenced-project path behind `PAPERCLIP_MULTI_PROJECT_WORKSPACE_SYNC`.
- Kept per-project failure isolation so one bad clone does not stop the
run.
- Keyed managed workspace directories by `projectId` so sibling
workspaces stay separate.
- Added `additionalSources[]` to the workspace realization request and
kept read and write paths backward compatible.
- Added tests for the anchor-only path, the new workspace shape, and the
per-project directory rule.

## Verification

- `pnpm --filter @paperclipai/server run typecheck`
- `pnpm --filter @paperclipai/shared run typecheck`
- `pnpm --filter @paperclipai/server exec vitest run
src/__tests__/heartbeat-project-env.test.ts` 21/21
- `pnpm --filter @paperclipai/server exec vitest run
src/__tests__/workspace-runtime.test.ts` 98/98

## Risks

Low risk. The new path stays behind a default-off kill switch, so the
anchor flow does not change when the flag is off.
The main risk is a bad referenced project clone. That case now drops
only the affected project and keeps the run alive.
The shared type change also needs every consumer to use the new array
field where extra workspaces matter.

## Model Used

OpenAI Codex (GPT-5; exact internal model ID not exposed in this
environment; tool use enabled)

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have searched GitHub for duplicate or related PRs and linked
them above
- [x] I have either (a) linked existing issues with `Fixes: #` / `Closes
#` / `Refs #` OR (b) described the issue in-PR following the relevant
issue template
- [x] I have not referenced internal/instance-local Paperclip issues or
links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip`
URLs)
- [x] My branch name describes the change (e.g. `docs/...`, `fix/...`)
and contains no internal Paperclip ticket id or instance-derived details
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [x] All Paperclip CI gates are green
- [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups
- [x] I will address all Greptile and reviewer comments before
requesting merge

---------

Co-authored-by: Paperclip <noreply@paperclip.ing>
2026-07-29 14:27:05 -07:00