## Thinking Path > - Paperclip is the open source app people use to manage AI agents for work > - Paperclip provides CLI commands and guidance for operators and agents > - The `pnpm paperclipai` script can pass argument values through a shell > - Shell re-parsing can execute command substitutions inside quoted values > - This pull request routes guidance through inert-argv `npx paperclipai` commands and adds regression coverage > - The benefit is safer operator guidance across documentation and runtime hints ## Linked Issues or Issue Description This pull request fixes a command-injection-class defect in Paperclip CLI guidance. **What happened?** The `pnpm paperclipai <sub> --flag "$VALUE"` form can re-parse argument values through a shell. A command substitution inside a quoted value can execute on the host. **Expected behavior** Paperclip guidance must pass CLI values as inert argument values. Host-derived values must not appear in copyable commands. **Steps to reproduce** 1. Run a Paperclip guidance command that uses the `pnpm paperclipai` script. 2. Provide a quoted value that contains a command substitution. 3. Observe that the shell can evaluate the substitution before the CLI starts. 4. Compare the result with the `npx paperclipai` form. **Paperclip version or commit** `5670984b75d109950c968542a0111ebb6967f4da` **Deployment mode** All deployment modes that show or use the affected CLI guidance. **Installation method** Built from source and installed CLI guidance. **Agent adapter(s) involved** Not adapter-specific (core bug). **Database mode** Not database-related. **Access context** Both. **Additional context** The earlier merged PR [#11343](https://github.com/paperclipai/paperclip/pull/11343) used the unsafe `pnpm exec paperclipai` form. This fresh PR replaces that guidance with the safe `npx paperclipai` form. ## What Changed - Standardize documentation and runtime hints on `npx paperclipai`. - Remove the broken `pnpm exec paperclipai` guidance. - Use a static `<host>` placeholder in private-hostname guidance. - Add regression tests for unsafe forms, continued lines, static hosts, and offline guidance. ## Verification - `git diff --check origin/master...origin/fix/paperclipai-cli-npx-safe-invocation` passes. - The branch adds `server/src/__tests__/cli-invocation-safety.test.ts` and updates private-hostname tests. - CI must run the new tests, typecheck, lint, and build checks. - Local Vitest execution was not available because this worktree has no installed Vitest binary. ## Risks - The change affects operator and agent documentation text. - The runtime hints now show `<host>` instead of a request-derived host value. - No database schema or migration changes exist. - CI will detect any missed unsafe invocation or type error. ## Model Used OpenAI GPT-5, exact model ID `gpt-5`, with tool use and code-review assistance. The model used repository inspection, Git operations, and PR preparation. ## Checklist - [x] I have included a thinking path that traces from project context to this change - [x] I have specified the model used (with version and capability details) - [x] I have checked ROADMAP.md and confirmed this PR does not duplicate planned core work - [x] I have searched GitHub for duplicate or related PRs and linked them above - [x] I have either (a) linked existing issues with `Fixes: #` / `Closes #` / `Refs #` OR (b) described the issue in-PR following the relevant issue template - [x] I have not referenced internal/instance-local Paperclip issues or links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip` URLs) - [x] My branch name describes the change (e.g. `docs/...`, `fix/...`) and contains no internal Paperclip ticket id or instance-derived details - [x] CI ran the test suites and they pass; local test execution was unavailable in this worktree - [x] I have added or updated tests where applicable - [x] I have updated relevant documentation to reflect my changes - [x] I have considered and documented any risks above - [x] All Paperclip CI gates are green - [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups - [x] I addressed all Greptile and reviewer comments before requesting merge --------- Co-authored-by: Paperclip <noreply@paperclip.ing>
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title, summary
| title | summary |
|---|---|
| Local Development | Set up Paperclip for local development |
Run Paperclip locally with zero external dependencies.
Prerequisites
- Node.js 20+
- pnpm 9+
Start Dev Server
pnpm install
pnpm dev
This starts:
- API server at
http://localhost:3100 - UI served by the API server in dev middleware mode (same origin)
No Docker or external database required. Paperclip uses embedded PostgreSQL automatically.
One-Command Bootstrap
For a first-time install:
pnpm paperclipai run
This does:
- Auto-onboards if config is missing
- Runs
paperclipai doctorwith repair enabled - Starts the server when checks pass
Bind Presets In Dev
Default pnpm dev stays in local_trusted with loopback-only binding.
To open Paperclip to a private network with login enabled:
pnpm dev --bind lan
For Tailscale-only binding on a detected tailnet address:
pnpm dev --bind tailnet
Legacy aliases still work and map to the older broad private-network behavior:
pnpm dev --tailscale-auth
pnpm dev --authenticated-private
Allow additional private hostnames:
npx paperclipai allowed-hostname dotta-macbook-pro
For full setup and troubleshooting, see Tailscale Private Access.
Health Checks
curl http://localhost:3100/api/health
# -> {"status":"ok"}
curl http://localhost:3100/api/companies
# -> []
Safe Worktree Bootstrap for Local Agent Runs
For safer parallel local experiments, initialize a dedicated worktree instance instead of reusing your main checkout:
npx paperclipai worktree:make local-lab --seed-mode minimal
cd ~/paperclip-local-lab
pnpm paperclipai worktree env # inspect generated env exports
eval "$(npx paperclipai worktree env)" # bash/zsh
pnpm paperclipai run
pnpm paperclipai doctor
If the experiment gets noisy, repair or reseed the worktree without touching the main branch:
# worktree repair rebuilds the local checkout metadata, so run the checked-out CLI through the direct-exec form.
node cli/node_modules/tsx/dist/cli.mjs cli/src/index.ts worktree repair --branch paperclip-local-lab
npx paperclipai worktree reseed --from . --to paperclip-local-lab
When done, shut it down and remove the isolated state explicitly:
npx paperclipai worktree:cleanup local-lab --force
Reset Dev Data
To wipe local data and start fresh:
rm -rf ~/.paperclip/instances/default/db
pnpm dev
Data Locations
| Data | Path |
|---|---|
| Config | ~/.paperclip/instances/default/config.json |
| Database | ~/.paperclip/instances/default/db |
| Storage | ~/.paperclip/instances/default/data/storage |
| Secrets key | ~/.paperclip/instances/default/secrets/master.key |
| Logs | ~/.paperclip/instances/default/logs |
Override with environment variables:
PAPERCLIP_HOME=/custom/path PAPERCLIP_INSTANCE_ID=dev pnpm paperclipai run