## Thinking Path > - Paperclip manages AI agent runs and their tool authority. > - Runner supplies provider sessions with assigned MCP connections. > - The current native connection binding supports an HTTP gateway only. > - Execution hosts also have private local tools with stdio MCP interfaces. > - Those tools need session-local registration and safe concurrency. > - This pull request adds verified local stdio assignments beside the existing gateway. > - Providers receive the existing tool schemas and image content. ## Linked Issues or Issue Description **Problem or motivation** Runner can supply a native provider session with an HTTP MCP gateway, but cannot also assign a verified local stdio MCP server without persistent provider configuration. Execution hosts need a session-local transport for local MCP tools, coordination for calls sharing a resource, and native schema/image delivery. The pinned native Codex client drops MCP images when `structuredContent` is also present. **Proposed solution** Add general stdio MCP transport support using host-assigned executable digests, arguments, environment and a private Unix socket identifying the shared resource. Tool implementations supply their own schemas and responses; Runner forwards their native MCP schemas and content. Register the transport for the current provider session. Serialize calls across processes, keep unknown outcomes fenced, and authorize assigned native Codex tools without a new prompt while routing explicit tool confirmations through existing PRP permission requests. Retain the HTTP gateway and applicable permission policy. **Alternatives considered** Reimplementing tools or translating their actions into provider-specific APIs would tie the transport to individual tool implementations. Global provider config would leak session assignments. Shell commands alone do not deliver native MCP images or preserve MCP approval requests. **Roadmap alignment** This completes the existing Runner transport boundary. Related: #10690 (operator config for the legacy ACPX engine), #11605 (gateway delivery of installed stdio connections), #16486 (preconfigured provider homes). This change assigns local tools on the execution host and leaves those administration paths intact. ## What Changed - Add reserved, verified stdio bindings for native Codex and through the shared ACPX runtime. ACPX clients must support stdio MCP assignments. Read-only sessions omit the binding. No home/project config is rewritten. - Run the backend with only its assigned environment through the verified executable launch path. - Serialize all calls sharing a private Unix socket across sessions. Metadata remains responsive. Queued cancellation prevents execution; active calls remain fenced until acknowledgement. Unknown outcomes require a resource restart. - Authorize host-assigned native Codex tools without a new per-call prompt, matching existing execution-host shell utilities. Preserve explicit tool deny/prompt rules. Route requested MCP tool confirmations through one-time PRP approvals, bound to the active thread and turn. Keep shell escalation disabled and existing tool deny rules effective. ACPX adapters retain their applicable ACPX permission policy. - Preserve schemas and image blocks. For native Codex 0.160/0.162, retain structured metadata as MCP text on image-bearing results to avoid the client's image-loss bug. ACPX adapters receive the original response. - Document transport authority, cancellation and recovery limits. ## Verification - `pnpm -r typecheck` and `pnpm build` passed with pnpm 9.15.4 and Rust 1.97.1 on macOS arm64. - Before Apex, full `paperclip-runner-core` Rust tests passed. After the fixes, all 379 library tests and eight subprocess tests using a generic stdio MCP fixture pass. Those subprocess tests cover schema/image passthrough, assigned-only environment, executable drift, call serialization, cancellation and unknown outcomes. The native Codex suite passed 91 tests with two intentionally ignored; `receipt_limit_rejects_the_call_and_keeps_polling_when_interrupt_fails` timed out waiting for `turn.interrupted`, including an isolated retry. The unchanged pre-fix commit `80917b301a2309f7966a466cf0c198a2112be2d5` reproduces the same timeout in isolation; this local native-suite run is not claimed as fully passing. - All 252 native controller tests pass against the final narrowed approval branch. Focused TypeScript transport/permission suites passed (298 tests); final binding, read-only host, policy and adapter checks passed (105 tests). - **Provider-client smoke coverage:** pinned Codex 0.160.0 through native Runner and Claude SDK 0.3.286 used local stdio MCP servers and loopback model API fixtures without live model credentials. These clients define the smoke-test coverage; this is not an exhaustive adapter compatibility test. Image responses reached the next model request as typed image blocks. Native Codex checks also verified unattended execution without approval requests, explicit per-tool prompt denial without backend execution, disabled-tool rules, and stale-turn approval rejection. - Two Greptile concurrency findings were reproduced with failing subprocess tests and fixed: pending cancellation under output backpressure, and a ctime-based fence reset after chmod. Initial checks exposed Codex CLI option-scope and key-quoting errors, which were corrected. The existing ordinary elicitation regression also exposed an overly broad request branch; the final branch handles explicit tool approvals only. - `pnpm test:run` was attempted. The broad local server suite hit persistent embedded PostgreSQL startup failures and unrelated local Git fixture failures; it was stopped with the failure log retained. Those local results are not claimed as passing. Hosted Linux CI gates passed on the reviewed runtime commit, as recorded below. - First Apex review found three additional defects, now fixed with regressions: keep the resource-lock socket snapshot instead of sampling the socket twice; project native permission requests with durable turn/item IDs while retaining provider IDs in details; validate provider response conversion before marking a request as settling. The retry regression failed before the fix. Focused Codex request/adapter checks pass (23 tests), server permission projection passes (16 tests), and all 379 Runner library tests pass. The broader database-backed bridge suite was attempted but its local PostgreSQL setup timed out; 29 tests did not execute. This local failure is retained, not claimed as passing. - Runtime acceptance before the documentation clarification, on `bd4fccae001157beb5bc76ff17c1920a5db3105a`: standard Greptile 5/5, then Apex 5/5 with no unresolved threads; all 60 checks complete successfully or intentionally skip. Ten CI jobs were interrupted by the same runner shutdown, including one stale job that required cancellation before retry; the same-commit retry passed. Hosted Rust tests also pass, including the native suite with the local baseline timeout noted above. - `git diff --check`, map validation, and pre-push secret/PII scan passed. ## Risks - No live model account or deployment isolation qualification was run. The loopback fixture proves the actual vendor-client request format, not model interpretation. - Stdio MCP support uses the current host-assignment contract: each binding requires a verified executable and a private Unix socket identifying the serialized resource. Other platforms retain the HTTP path. No provider version was upgraded. - A lost acknowledgement blocks subsequent calls until the host restarts the assigned resource. Direct shell calls are outside this MCP fence and retain the existing shell policy. - Preconfigured Claude remains unattended and denies interactive approval requests. Host assignment authorizes native Codex local tools; it must be supplied only for sessions already authorized to use the resource. ## Model Used OpenAI Codex, GPT-6, with reasoning and repository/tool execution. The session does not expose a more specific model identifier or context-window size. ## Checklist - [x] I have included a thinking path that traces from project context to this change - [x] I have specified the model used (with version and capability details) - [x] I have checked ROADMAP.md and confirmed this PR does not duplicate planned core work - [x] I have searched GitHub for duplicate or related PRs and linked them above - [x] I have either (a) linked existing issues with `Fixes: #` / `Closes #` / `Refs #` OR (b) described the issue in-PR following the relevant issue template - [x] I have not referenced internal/instance-local Paperclip issues or links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip` URLs) - [x] My branch name describes the change (e.g. `docs/...`, `fix/...`) and contains no internal Paperclip ticket id or instance-derived details - [ ] I have run tests locally and they pass - [x] I have added or updated tests where applicable - [x] I have updated relevant documentation to reflect my changes - [x] I have considered and documented any risks above - [ ] All Paperclip CI gates are green - [ ] Greptile is 5/5 with no open P2s, recommendations, or follow-ups - [x] I will address all Greptile and reviewer comments before requesting merge --------- Co-authored-by: Paperclip <noreply@paperclip.ing>
7.4 KiB
Tool gateways and access profiles — agent access
Product map: Tool gateways and access profiles.
Review date: 2026-10-12. Source commit: 58e16dbddfc9c8d0cf60867f9d9847f0feda055b.
Native REST transport reconciled in this change; see the
shared transport contract.
This is a source-reviewed baseline of representative operations and known gaps. Each capability needs operation-level review before its entire scope can be qualified. No live agent execution is claimed. Follow the map contract for format, permission checks, evidence and maintenance.
gateway
Review: baseline.
API: present — representative operation IDs:
POST /api/companies/{companyId}/tools/gateways.
Agent access: restricted — Board tools:admin REST; CLI connections/configuration where
supported.
Policy: Named gateway/profile administration and credentials are board tools:admin; agent sessions/tool use use separate scoped authority.
Evidence: source-only — implementation
at the reviewed commit above.
Verification: not-run — assert the documented agent denial with an owned test fixture;
verify any listed agent request/result path separately. A delegated operation needs its
own policy and access review.
Gaps: No agent named-gateway management path; assigned tool use exists separately.
profiles
Review: baseline.
API: present — representative operation IDs:
POST /api/companies/{companyId}/tools/profiles.PATCH /api/tool-profiles/{profileId}.
Agent access: restricted — Board management REST; agent receives effective tool
assignment.
Policy: Named gateway/profile administration and credentials are board tools:admin; agent sessions/tool use use separate scoped authority.
Evidence: source-only — implementation
at the reviewed commit above.
Verification: not-run — assert the documented agent denial with an owned test fixture;
verify any listed agent request/result path separately. A delegated operation needs its
own policy and access review.
Gaps: Agent access to tools does not permit profile editing.
Backend evidence: profile entry validation covers company-scoped selector references and bounded reads for a large immutable runtime assignment. Batched validation retains the checks before profile and entry writes. It grants no profile-management authority to agents.
client-connect
Review: baseline.
API: present — representative operation IDs:
GET /api/tool-gateway/gateways/{gatewayId}/mcp.POST /api/tool-gateway/sessions.
Agent access: partial — Agent REST / native call_api for scoped session creation
and revocation; existing MCP client protocol and assigned native app tools.
Policy: Named gateway/profile administration and credentials are board tools:admin; agent sessions/tool use use separate scoped authority.
Evidence: source-only — implementation
at the reviewed commit above.
Verification: not-run — exercise a listed permitted operation with actual agent
credentials/run context; inspect its result and applicable persistence/attribution.
Assert the relevant denied actor, owner, company or mode from Policy. Review the
remaining operations before qualifying the whole capability.
Gaps: Scoped sessions remain agent/run-bound. MCP requires its existing protocol client; named gateways and gateway-token management retain board permissions.
Discovery collapses identical descriptors with the same gateway name across providers, including native assigned-tool startup and fresh searches. Conflicting definitions remain an error. Distinct names and the normal invocation grants, approvals and revocation checks remain independent. Regression coverage lives in gateway tests and assigned-tool tests; these fixtures do not certify a live external-client journey.
tokens
Review: baseline.
API: present — representative operation IDs:
POST /api/tool-gateway/gateways/{gatewayId}/tokens.POST /api/tool-gateway/gateway-tokens/{tokenId}/revoke.
Agent access: restricted — Board tools:admin token management.
Policy: Named gateway/profile administration and credentials are board tools:admin; agent sessions/tool use use separate scoped authority.
Evidence: source-only — implementation
at the reviewed commit above.
Verification: not-run — assert the documented agent denial with an owned test fixture;
verify any listed agent request/result path separately. A delegated operation needs its
own policy and access review.
Gaps: Gateway-token management requires board tools:admin at the HTTP route.
A grant to use an app does not create this authority; native call_api preserves
the denial.
activity
Review: baseline.
API: present — representative operation IDs:
GET /api/tool-gateway/audit.
Agent access: restricted — Board tools:view_audit; agent receives its own tool
receipts/errors.
Policy: Named gateway/profile administration and credentials are board tools:admin; agent sessions/tool use use separate scoped authority.
Evidence: source-only — implementation
at the reviewed commit above.
Verification: not-run — assert the documented agent denial with an owned test fixture;
verify any listed agent request/result path separately. A delegated operation needs its
own policy and access review.
Gaps: Audit management API exists but broad audit visibility is not an agent use-path guarantee.
Execution-host stdio assignments
Runner registers verified, session-local stdio servers from the execution host with native Codex and through the shared ACPX runtime. ACPX clients must support stdio MCP assignments. The transport uses each implementation's own schemas and responses. Each binding requires a private Unix socket to identify the shared resource whose calls are serialized. This is a separate binding alongside the HTTP gateway; it does not create gateway/profile administration authority. Tasks cannot supply these reserved environment inputs. Read-only sessions omit them. ACPX adapters use their applicable ACPX permission policy. Host-assigned native Codex tools run without a new per-call prompt, matching existing execution-host shell utilities. Explicit deny/prompt rules remain effective; requested approvals use PRP with active thread/turn checks and one-time decisions. Preconfigured Claude rejects interactive approval requests. See the Runner contract.
Local fixture coverage: binding validation, relay processes and cancellation, and approval projection. Provider-client image and approval smoke tests used native Codex and Claude SDK; that coverage is not an exhaustive adapter compatibility test. Vendor-client evidence belongs in the PR. These checks do not certify live external credentials, deployment isolation or gateway revocation.