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DottaandClaude Opus 5.5
cf9c81d9a7
## Thinking Path > - Paperclip is the open source app people use to manage AI agents for work > - Every native run records performance spans in its run log, the instance-local `heartbeat_run_events` table, so slow turns can be diagnosed without any external service > - The steps between environment acquisition and dispatch are timed by named preparation phases, but those timings reach only OpenTelemetry, which is off unless an operator configures an endpoint > - On a Daytona follow-up in a paperclip-sized workspace, 17–30 s sat in one opaque span, `heartbeat.prepare_after_environment` > - This pull request also records the named preparation phases, and their nested steps, as run-log spans > - The benefit is that the next slow step shows up by name in the run log; this change found a full workspace re-upload on every remote turn ## Linked Issues or Issue Description **What happened?** The run log showed `heartbeat.prepare_after_environment` at 17–30 s on Daytona follow-ups, with nothing inside it. The phases that would explain it (`heartbeat.prepare.*`, `runtime_selection.*`, `workspace_sync.*`) were recorded only as OpenTelemetry spans, and those are a no-op without an OTLP endpoint. **Steps to reproduce** 1. Run a Codex task on a Daytona environment with a large repository as the project workspace. 2. Post a follow-up comment. 3. The run log shows one large `heartbeat.prepare_after_environment` span with no children. **Expected behavior** The run log names the steps that make up the wait. ## What Changed - `execution-preparation-timing.ts`: every named preparation phase (`measure`) and nested run phase (`measureRunPhase`) records its start, end and outcome in a per-run in-memory list. - Bounds: phases under 50 ms are skipped, at most 200 per run, at most 256 runs held. - Without a tracer, the run scope is still set, so nested phases reach the run. - OpenTelemetry behavior is unchanged. - `runtime-execution.ts`: at native dispatch, the recorded phases are drained into the run's preparation spans under `task.prepare`. - `runtime-selection.ts`: the remote Codex CLI version read and the runtime context build get their own phases, `runtime_selection.codex_cli_version` and `runtime_selection.runtime_context`. ## Verification - `execution-preparation-phases.test.ts`: a slow phase is recorded and a fast one skipped, a failure is marked, draining clears the run, runs are kept apart, and a nested `measureRunPhase` step is recorded without a tracer. - `database-operation-attribution`, `company-skills-observability` and `github-catalog-timing`: pass (15 tests in total). - Daytona Codex run in a fresh paperclip clone: the follow-up's 17.8 s gap now reads `heartbeat.prepare.runtime_selection` 15.7 s, then `runtime_selection.workspace_sync` 15.4 s, then `workspace_sync.transfer` 13.3 s. ## Risks - This is a run-log change only, not Telemetry: the data stays in the instance database. It adds roughly 10–40 spans per run, bounded as above. - The recorder is in memory and per process. A run that never dispatches is evicted when the cap of 256 runs is reached. ## Model Used - Claude Opus 5.5 (`claude-opus-5-5`), Anthropic, via Claude Code with tool use (shell, file editing, test execution, Daytona measurements). ## Checklist - [x] I have included a thinking path that traces from project context to this change - [x] I have specified the model used (with version and capability details) - [x] I have checked ROADMAP.md and confirmed this PR does not duplicate planned core work - [x] I have searched GitHub for duplicate or related PRs and linked them above - [x] I have either (a) linked existing issues with `Fixes: #` / `Closes #` / `Refs #` OR (b) described the issue in-PR following the relevant issue template - [x] I have not referenced internal/instance-local Paperclip issues or links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip` URLs) - [x] My branch name describes the change (e.g. `docs/...`, `fix/...`) and contains no internal Paperclip ticket id or instance-derived details - [x] I have run tests locally and they pass - [x] I have added or updated tests where applicable - [x] I have updated relevant documentation to reflect my changes - [x] I have considered and documented any risks above - [ ] All Paperclip CI gates are green - [ ] Greptile is 5/5 with no open P2s, recommendations, or follow-ups - [x] I will address all Greptile and reviewer comments before requesting merge 🤖 Generated with [Claude Code](https://claude.com/claude-code) --------- Co-authored-by: Claude Opus 5.5 <noreply@anthropic.com>