Files
PaperClipAI/doc/DOCKER.md
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DottaandPaperclip 3db2e6bdd2 feat(mcp) [split 8/8]: add e2e coverage and operator docs (#9563)
## Thinking Path

> - Paperclip is the open source app people use to manage AI agents for
work
> - Governed MCP access spans contracts, runtime enforcement, adapters,
UI surfaces, and operator verification
> - The parity reference PR #9534 is too large for effective automated
or human review
> - The feature therefore needs a linear stack whose individual diffs
stay below the 100-file review limit
> - This pull request is split 8/8 and focuses on end-to-end coverage,
operator docs, evals, and release notes
> - The benefit is a standalone, testable review boundary while
preserving byte-for-byte parity at the top of the stack

## Linked Issues or Issue Description

- Related parity reference: #9534
- Problem: The complete stack needs discoverable browser scenarios,
operator guidance, threat modeling, eval coverage, and a parity proof
before merge.
- Proposed solution: Adds MCP user-story and Smoke Lab e2e suites,
docs/evals/release notes, the skill update, and the root e2e driver
script registration.
- Alternatives considered: keeping #9534 as one 403-file review, or
rewriting the feature to manufacture seams; both were rejected in favor
of path extraction plus compile-driven boundary moves.
- Roadmap alignment: this advances the existing governed MCP/tool-access
work already represented by #9534; it does not introduce a separate
roadmap initiative.
- Stack position: base branch is `pap10341-split/07-ui-apps-activation`.
- Merge policy: merge bottom-up, in order, only after the complete
eight-PR stack has been reviewed and the top-of-stack parity gate
remains empty.
- Requested review: QA for flag audit and e2e/browser acceptance;
Greptile on every PR.

## What Changed

- Adds MCP user-story and Smoke Lab e2e suites, docs/evals/release
notes, the skill update, and the root e2e driver script registration.
- Keeps this PR below 100 changed files and independently typecheckable.
- Preserves the final tree from #9534 when combined with the other seven
stack levels.

## Verification

- `pnpm typecheck`
- `node --check scripts/e2e-mcp-user-stories.mjs`
- `pnpm exec playwright test --config tests/e2e/playwright.config.ts
--list` — 43 tests discovered
- `git diff pap10341-split/08-e2e-docs
6b40e3876d9297105d4ec306e47e46d351c86172` — empty (0 bytes)

## Risks

- Browser suites depend on runtime services and environment setup; this
PR validates discovery locally while QA owns full flag-on/flag-off
execution.
- Stack risk: merging out of order can expose incomplete layers;
mitigate by following the documented bottom-up merge policy.
- Parity risk: later edits to an intermediate branch can drift from
#9534; mitigate by re-running the empty top-of-stack diff before merge.

> For core feature work, check [`ROADMAP.md`](ROADMAP.md) first and
discuss it in `#dev` before opening the PR. Feature PRs that overlap
with planned core work may need to be redirected — check the roadmap
first. See `CONTRIBUTING.md`.

## Model Used

- OpenAI Codex, exact model ID `gpt-5.4`; runtime-managed context
window; medium reasoning with repository, shell, Git, GitHub CLI, and
code-execution tools enabled.

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have searched GitHub for duplicate or related PRs and linked
them above
- [x] I have either (a) linked existing issues with `Fixes: #` / `Closes
#` / `Refs #` OR (b) described the issue in-PR following the relevant
issue template
- [x] Internal references are omitted except the execution-plan link
explicitly required for this coordinated split stack
- [x] My branch name describes the change and contains no internal
Paperclip ticket id or instance-derived details
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [ ] All Paperclip CI gates are green
- [ ] Greptile is 5/5 with no open P2s, recommendations, or follow-ups
- [x] I will address all Greptile and reviewer comments before
requesting merge


## Stack Coordination

- Internal execution plan:
[PAP-13874](/PAP/issues/PAP-13874#document-plan)
- Parity reference: #9534
- Stack: #9556 → #9557 → #9558 → #9559 → #9560 → #9561 → #9562 → #9563
- Merge bottom-up only after full-stack review and an empty parity diff
at #9563.

---------

Co-authored-by: Paperclip <noreply@paperclip.ing>
2026-07-14 15:48:57 -05:00

9.5 KiB

Docker Quickstart

Run Paperclip in Docker without installing Node or pnpm locally.

All commands below assume you are in the project root (the directory containing package.json), not inside docker/.

Building the image

docker build -t paperclip-local .

The Dockerfile installs common agent tools (git, gh, curl, wget, ripgrep, python3) and the Claude, Codex, and OpenCode CLIs.

Build arguments:

Arg Default Purpose
USER_UID 1000 UID for the container node user (match your host UID to avoid permission issues on bind mounts)
USER_GID 1000 GID for the container node group
docker build -t paperclip-local \
  --build-arg USER_UID=$(id -u) --build-arg USER_GID=$(id -g) .

One-liner (build + run)

docker build -t paperclip-local . && \
docker run --name paperclip \
  -p 3100:3100 \
  -e HOST=0.0.0.0 \
  -e PAPERCLIP_HOME=/paperclip \
  -e BETTER_AUTH_SECRET=$(openssl rand -hex 32) \
  -e PAPERCLIP_TOOL_ACTION_SIGNING_SECRET=$(openssl rand -hex 32) \
  -v "$(pwd)/data/docker-paperclip:/paperclip" \
  paperclip-local

Open: http://localhost:3100

Data persistence:

  • Embedded PostgreSQL data
  • uploaded assets
  • local secrets key
  • local agent workspace data

All persisted under your bind mount (./data/docker-paperclip in the example above).

Docker Compose

Quickstart (embedded SQLite)

Single container, no external database. Data persists via a bind mount.

BETTER_AUTH_SECRET=$(openssl rand -hex 32) \
PAPERCLIP_TOOL_ACTION_SIGNING_SECRET=$(openssl rand -hex 32) \
  docker compose -f docker/docker-compose.quickstart.yml up --build

Defaults:

  • host port: 3100
  • persistent data dir: ./data/docker-paperclip

Optional overrides:

PAPERCLIP_PORT=3200 PAPERCLIP_DATA_DIR=../data/pc \
  docker compose -f docker/docker-compose.quickstart.yml up --build

Note: PAPERCLIP_DATA_DIR is resolved relative to the compose file (docker/), so ../data/pc maps to data/pc in the project root.

If you change host port or use a non-local domain, set PAPERCLIP_PUBLIC_URL to the external URL you will use in browser/auth flows.

Pass OPENAI_API_KEY and/or ANTHROPIC_API_KEY to enable local adapter runs.

Full stack (with PostgreSQL)

Paperclip server + PostgreSQL 17. The database is health-checked before the server starts.

BETTER_AUTH_SECRET=$(openssl rand -hex 32) \
  docker compose -f docker/docker-compose.yml up --build

PostgreSQL data persists in a named Docker volume (pgdata). Paperclip data persists in paperclip-data.

Untrusted PR review

Isolated container for reviewing untrusted pull requests with Codex or Claude, without exposing your host machine. See doc/UNTRUSTED-PR-REVIEW.md for the full workflow.

docker compose -f docker/docker-compose.untrusted-review.yml build
docker compose -f docker/docker-compose.untrusted-review.yml run --rm --service-ports review

Authenticated Compose (Single Public URL)

For authenticated deployments, set one canonical public URL and let Paperclip derive auth/callback defaults:

services:
  paperclip:
    environment:
      PAPERCLIP_DEPLOYMENT_MODE: authenticated
      PAPERCLIP_DEPLOYMENT_EXPOSURE: private
      PAPERCLIP_PUBLIC_URL: https://desk.koker.net

PAPERCLIP_PUBLIC_URL is used as the primary source for:

  • auth public base URL
  • Better Auth base URL defaults
  • bootstrap invite URL defaults
  • hostname allowlist defaults (hostname extracted from URL)

For fresh authenticated/private Docker or appliance-style installs, the first admin can now be claimed entirely from the browser after sign-in. Open the Paperclip URL, sign in or create an account, then choose Claim this instance on the setup screen. This browser claim is disabled for authenticated/public; public deployments should run the high-entropy CLI invite fallback instead:

pnpm paperclipai auth bootstrap-ceo

Granular overrides remain available if needed (PAPERCLIP_AUTH_PUBLIC_BASE_URL, BETTER_AUTH_URL, BETTER_AUTH_TRUSTED_ORIGINS, PAPERCLIP_ALLOWED_HOSTNAMES).

Set PAPERCLIP_ALLOWED_HOSTNAMES explicitly only when you need additional hostnames beyond the public URL host (for example Tailscale/LAN aliases or multiple private hostnames).

Claude + Codex Local Adapters in Docker

The image pre-installs:

  • claude (Anthropic Claude Code CLI)
  • codex (OpenAI Codex CLI)

If you want local adapter runs inside the container, pass API keys when starting the container:

docker run --name paperclip \
  -p 3100:3100 \
  -e HOST=0.0.0.0 \
  -e PAPERCLIP_HOME=/paperclip \
  -e OPENAI_API_KEY=... \
  -e ANTHROPIC_API_KEY=... \
  -v "$(pwd)/data/docker-paperclip:/paperclip" \
  paperclip-local

Notes:

  • Without API keys, the app still runs normally.
  • Adapter environment checks in Paperclip will surface missing auth/CLI prerequisites.

Podman Quadlet (systemd)

The docker/quadlet/ directory contains unit files to run Paperclip + PostgreSQL as systemd services via Podman Quadlet.

File Purpose
docker/quadlet/paperclip.pod Pod definition — groups containers into a shared network namespace
docker/quadlet/paperclip.container Paperclip server — joins the pod, connects to Postgres at 127.0.0.1
docker/quadlet/paperclip-db.container PostgreSQL 17 — joins the pod, health-checked

Setup

  1. Build the image (see above).

  2. Copy quadlet files to your systemd directory:

    # Rootless (recommended)
    cp docker/quadlet/*.pod docker/quadlet/*.container \
      ~/.config/containers/systemd/
    
    # Or rootful
    sudo cp docker/quadlet/*.pod docker/quadlet/*.container \
      /etc/containers/systemd/
    
  3. Create a secrets env file (keep out of version control):

    cat > ~/.config/containers/systemd/paperclip.env <<EOL
    BETTER_AUTH_SECRET=$(openssl rand -hex 32)
    PAPERCLIP_TOOL_ACTION_SIGNING_SECRET=$(openssl rand -hex 32)
    POSTGRES_USER=paperclip
    POSTGRES_PASSWORD=paperclip
    POSTGRES_DB=paperclip
    DATABASE_URL=postgres://paperclip:paperclip@127.0.0.1:5432/paperclip
    # OPENAI_API_KEY=sk-...
    # ANTHROPIC_API_KEY=sk-...
    EOL
    
  4. Create the data directory and start:

    mkdir -p ~/.local/share/paperclip
    systemctl --user daemon-reload
    systemctl --user start paperclip-pod
    

Quadlet management

journalctl --user -u paperclip -f        # App logs
journalctl --user -u paperclip-db -f     # DB logs
systemctl --user status paperclip-pod    # Pod status
systemctl --user restart paperclip-pod   # Restart all
systemctl --user stop paperclip-pod      # Stop all

Quadlet notes

  • First boot: Unlike Docker Compose's condition: service_healthy, Quadlet's After= only waits for the DB unit to start, not for PostgreSQL to be ready. On a cold first boot you may see one or two restart attempts in journalctl --user -u paperclip while PostgreSQL initialises — this is expected and resolves automatically via Restart=on-failure.
  • Containers in a pod share localhost, so Paperclip reaches Postgres at 127.0.0.1:5432.
  • PostgreSQL data persists in the paperclip-pgdata named volume.
  • Paperclip data persists at ~/.local/share/paperclip.
  • For rootful quadlet deployment, remove %h prefixes and use absolute paths.

Onboard Smoke Test (Ubuntu + npm only)

Use this when you want to mimic a fresh machine that only has Ubuntu + npm and verify:

  • npx paperclipai onboard --yes completes
  • the server binds to 0.0.0.0:3100 so host access works
  • onboard/run banners and startup logs are visible in your terminal

Build + run:

./scripts/docker-onboard-smoke.sh

Open: http://localhost:3131 (default smoke host port)

Useful overrides:

HOST_PORT=3200 PAPERCLIPAI_VERSION=latest ./scripts/docker-onboard-smoke.sh
PAPERCLIP_DEPLOYMENT_MODE=authenticated PAPERCLIP_DEPLOYMENT_EXPOSURE=private ./scripts/docker-onboard-smoke.sh
SMOKE_DETACH=true SMOKE_METADATA_FILE=/tmp/paperclip-smoke.env PAPERCLIPAI_VERSION=latest ./scripts/docker-onboard-smoke.sh

Notes:

  • Persistent data is mounted at ./data/docker-onboard-smoke by default.
  • Container runtime user id defaults to your local id -u so the mounted data dir stays writable while avoiding root runtime.
  • Smoke script defaults to authenticated/private mode so HOST=0.0.0.0 can be exposed to the host.
  • Smoke script defaults host port to 3131 to avoid conflicts with local Paperclip on 3100.
  • Smoke script also defaults PAPERCLIP_PUBLIC_URL to http://localhost:<HOST_PORT> so bootstrap invite URLs and auth callbacks use the reachable host port instead of the container's internal 3100.
  • In authenticated mode, the smoke script defaults SMOKE_AUTO_BOOTSTRAP=true and drives the real bootstrap path automatically: it signs up a real user, runs paperclipai auth bootstrap-ceo inside the container to mint a real bootstrap invite, accepts that invite over HTTP, and verifies board session access.
  • Run the script in the foreground to watch the onboarding flow; stop with Ctrl+C after validation.
  • Set SMOKE_DETACH=true to leave the container running for automation and optionally write shell-ready metadata to SMOKE_METADATA_FILE.
  • The image definition is in docker/Dockerfile.onboard-smoke.

General Notes

  • The docker-entrypoint.sh adjusts the container node user UID/GID at startup to match the values passed via USER_UID/USER_GID, avoiding permission issues on bind-mounted volumes.
  • Paperclip data persists via Docker volumes/bind mounts (compose) or at ~/.local/share/paperclip (quadlet).