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## Thinking Path
> - Paperclip is the open source app people use to manage AI agents for
work
> - A restart must resume in-progress runs on its own. Restart recovery
classifies each claimed native run and the executor acts on that claim.
> - A C1 follow-up on a remote sandbox first retires the finished owner
of the previous turn (it archives the previous controller state), then
launches a new runner.
> - A restart in that window left the run with an inherited session
checkpoint but no runner for this run. Recovery read the inherited
checkpoint as proof of a live remote runner and claimed reattach. The
executor then found no runner identity and failed with
`durable_identity_unreadable`, so the user had to press Retry.
> - This pull request makes recovery recognize that nothing reached a
runner for this run, and makes the executor bootstrap again over the
empty root.
> - The benefit is that this restart window resumes the follow-up by
itself.
## Linked Issues or Issue Description
**What happened?**
In restart-chaos Daytona K13 storm wave seed 9503, task t03 (codex, C1)
graded R3 retry_needed. Follow-up run 0d8b7258 retired its previous
owner at 10:07:32.988 ("Run 4ee1c19a finished without a saved runner
checkpoint; starting a new runner"). A K1 kill at 10:07:34 cut it off
before any runner start was requested. On restart, recovery claimed
`reattach_remote_runner` and the executor failed with
`runner_state_identity_mismatch: durable_identity_unreadable`. The run
ended with `native_continuation_requires_reconciliation` and a Retry
offer.
**Expected behavior**
Recovery sees that no runner was ever requested for this run, claims
`bootstrap_incomplete`, and the executor starts the new runner the first
attempt was about to start.
**Steps to reproduce**
1. Run a remote (Daytona) C1 follow-up whose previous turn finished.
2. Kill the server after the follow-up retires the finished owner and
before it records `native.process_start_requested`.
3. Restart the server. See the `reattach_remote_runner` claim and the
`durable_identity_unreadable` failure.
**Paperclip version or commit**
master at 3963d38560
## What Changed
- `native-restart-recovery.ts`: the `remote_runner_never_launched` proof
also holds when the run carries only its continued session. That means a
session checkpoint with a matching identity and no projected provider
event, active turn, semantic result, terminal or pending runtime
request, plus the predecessor's `sessionIdBefore`. The proof still
requires no `native.process_start_requested`, no controller checkpoint
for this run, no runner process identity and no `sessionIdAfter`. The
classifier then sees no checkpoint for this run.
- `native-session-executor.ts`: a `bootstrap_incomplete` claim over a
root with no runner identity and no controller state quarantines that
root and bootstraps again for a remote target too. Previously only a
local target with no live runner process could do this. Such a root was
never authenticated by a controller on this host.
- Tests: four classifier cases (restart; a requested runner start, a
pending runtime request and a projected provider event stay held). Two
executor cases (created and replacement sandbox) restart the exact state
the kill left after the retire.
## Verification
- Red before the fix: the classifier test got a non-bootstrap claim. The
executor tests failed with `runner_state_identity_mismatch:
durable_identity_unreadable`, the error from the wave. Both pass after
it.
- `native-runner-restart-recovery.integration.test.ts` and
`native-recovered-owner-followup.test.ts`: 239 passed.
- `native-session-executor.test.ts`: 1,310 passed.
- `PAPERCLIP_TYPECHECK_LOW_MEMORY=1 pnpm typecheck` in `server`: passes.
## Risks
- Low to medium. The proof widens only for a claimed remote run with
none of its own start, checkpoint, runner or provider evidence. A
pending runtime request in the inherited checkpoint still holds the run,
as in #20226.
- The quarantined root keeps the archived previous owner for inspection.
The usual quarantine retention applies.
- Previous-release story: no saved state or schema changes. A run that
an older build left in this state is classified with the new rule at its
next claim.
## Model Used
- Claude Opus 5.5 (`claude-opus-5-5`), Anthropic, via Claude Code with
tool use and code execution.
## Checklist
- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have searched GitHub for duplicate or related PRs and linked
them above
- [x] I have either (a) linked existing issues with `Fixes: #` / `Closes
#` / `Refs #` OR (b) described the issue in-PR following the relevant
issue template
- [x] I have not referenced internal/instance-local Paperclip issues or
links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip`
URLs)
- [x] My branch name describes the change (e.g. `docs/...`, `fix/...`)
and contains no internal Paperclip ticket id or instance-derived details
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [x] All Paperclip CI gates are green
- [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups
- [x] I will address all Greptile and reviewer comments before
requesting merge
🤖 Generated with [Claude Code](https://claude.com/claude-code)
Co-authored-by: Claude Opus 5.5 <noreply@anthropic.com>