Files
PaperClipAI/packages/plugins/sandbox-providers/daytona
DottaandClaude Opus 5.5 037c58bb22 fix(daytona): keep the provider auto-stop strictly after the warm runner idle window (#19199)
## Thinking Path

> - Paperclip is the open source app people use to manage AI agents for
work
> - A warm remote agent keeps its sandbox running after a turn. The host
keeps a warm runner for an idle window (`runnerIdleTimeoutMs`, or the
agent's `idleTimeoutMs`)
> - The Daytona provider also stops an idle sandbox after
`autoStopInterval` minutes. The default is 15 minutes
> - On staging, the warm idle window was 900,000 ms (15 minutes). The
two windows were equal
> - A follow-up turn at the end of the warm window resumed a sandbox
that Daytona was stopping. Daytona refused the resume in about 4
seconds, and the run failed at setup
> - #19195 added a bounded retry for that refusal. It did not remove the
cause
> - This pull request makes the two windows non-overlapping by
construction. Daytona derives its auto-stop for a warm reusable sandbox
from the same warm idle value that the host uses
> - The benefit is that a follow-up inside the warm window always finds
a running sandbox, and idle sandboxes still stop

## Linked Issues or Issue Description

Refs #19195 (bounded retry for a refused resume; this change removes the
common cause).

**What happened?**

On a staging soak, three follow-up runs failed at setup with a refused
sandbox resume. Each resume began 15 minutes 8 to 25 seconds after the
previous turn released the sandbox. The warm idle timeout was 900,000
ms. Daytona's default `autoStopInterval` is 15 minutes. Nothing in the
code kept these two values apart.

**Expected behavior**

A reusable sandbox that keeps a warm runner must not auto-stop inside
the warm idle window or at its edge. The provider backstop must fire
after the host's own idle handling, with a margin. Idle sandboxes must
still stop.

**Steps to reproduce**

1. Configure a Daytona sandbox environment with `reuseLease` and a warm
runner with `runnerIdleTimeoutMs: 900000` (or an agent with
`lifecycleMode: warm`, `idleTimeoutMs: 900000`).
2. Run a turn. Do not set `autoStopInterval`.
3. Before this change: the sandbox is created with `autoStopInterval:
15`, equal to the warm window. A follow-up near minute 15 races the
provider stop.

**Paperclip version or commit**

`c656b95b6b` (current `master`).

## What Changed

- Daytona plugin (`plugin.ts`): add `effectiveAutoStopIntervalMinutes`.
For a reusable lease that keeps a warm runner, the effective auto-stop
is at least `ceil(warm idle / 1 min) + 5` minutes. The plugin applies
the floor only when the host forwards `warmRunnerIdleTimeoutMs`, or when
the environment itself selects `runnerLifecycleMode: warm`. An explicit
`0` (disabled), a longer configured value, `inherit` with a per-turn
agent, per-turn, and non-reusable sandboxes keep the configured value.
- Daytona plugin: use the effective value at sandbox creation. On
resume, raise a shorter auto-stop on an existing sandbox. This update is
best effort and bounded to 5 seconds; the #19195 retry still covers a
refusal. The stale-handle refresh threshold keeps the configured
interval, so a cached handle is not trusted for longer before the
provider confirms the new interval. The warm window is not written to
the saved normalized config.
- Host (`runner-environment-lifecycle.ts`): add
`resolveWarmRunnerIdleTimeoutMsForRun`. It returns the run's effective
warm idle window (environment `runnerIdleTimeoutMs`, else the agent
`idleTimeoutMs`) for a warm `paperclip_runner` sandbox run. It shares
the lifecycle-mode resolution with `resolveRunnerEnvironmentForRun`.
- Host (`environment-run-orchestrator.ts`, `environment-runtime.ts`):
pass that value as `warmRunnerIdleTimeoutMs` to the sandbox-provider
driver on acquisition and on remote recovery resume. The driver adds it
to the provider worker config only. Lease identity, reuse matching, and
lease metadata are unchanged.
- Daytona manifest: describe the warm floor on `autoStopInterval`.
- `doc/execution-semantics.md`: document the contract.

## Verification

- Red (before the fix, same tests, with the floor disabled): 5 failures
in `plugin.test.ts` "warm idle window versus Daytona auto-stop". The
staging case failed with `expected 900000 to be greater than or equal to
1200000`. The resume case failed because `setAutostopInterval` was not
called.
- Red (host): the new `environment-runtime.test.ts` case first failed
because the provider worker config had no `runnerIdleTimeoutMs`. The
service wrapper dropped the field. The fix forwards it.
- Green: `npx vitest run --config vitest.config.ts` in
`packages/plugins/sandbox-providers/daytona`: 563 passed. This includes
a setter that never settles (resume completes after the 5-second bound)
and `inherit` with no forwarded window (explicit `autoStopInterval: 2`
stays 2).
- Green: `npx vitest run
src/services/runner-environment-lifecycle.test.ts
src/__tests__/environment-runtime.test.ts
src/__tests__/environment-run-orchestrator.test.ts` in `server/`: 242
passed. This includes recovery resume forwarding the admitted warm
window.
- The regression tests assert the relationship `autoStop >= warm idle +
margin` for several warm windows (125 s, 300 s default, 900 s, 1,800 s)
and for an explicit `autoStopInterval: 15`. They are not constant
checks.
- `node scripts/typecheck-low-memory.mjs` passes. `pnpm typecheck` in
the Daytona package passes.

## Risks

- A warm reusable Daytona sandbox now stays running up to the warm
window plus 5 minutes after its last activity, instead of 15 minutes.
With a 15-minute window this is 20 minutes. Cost is bounded and idle
sandboxes still stop.
- The resume-time `setAutostopInterval` call is best effort. If it
fails, the old interval stays and the #19195 retry still applies.
- Other providers are unchanged. They receive one extra host-owned
config key (`warmRunnerIdleTimeoutMs`) only for warm `paperclip_runner`
runs, and they ignore unknown keys.
- No lease identity change, so existing retained sandboxes are still
reused.

> For core feature work, check [`ROADMAP.md`](ROADMAP.md) first and
discuss it in `#dev` before opening the PR. Feature PRs that overlap
with planned core work may need to be redirected — check the roadmap
first. See `CONTRIBUTING.md`.

## Model Used

- Claude Opus 5.5 (Anthropic), model ID `claude-opus-5-5`, used through
Claude Code with tool use (shell, file edits, test execution).

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have searched GitHub for duplicate or related PRs and linked
them above
- [x] I have either (a) linked existing issues with `Fixes: #` / `Closes
#` / `Refs #` OR (b) described the issue in-PR following the relevant
issue template
- [x] I have not referenced internal/instance-local Paperclip issues or
links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip`
URLs)
- [x] My branch name describes the change (e.g. `docs/...`, `fix/...`)
and contains no internal Paperclip ticket id or instance-derived details
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [x] All Paperclip CI gates are green
- [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups
- [x] I will address all Greptile and reviewer comments before
requesting merge

🤖 Generated with [Claude Code](https://claude.com/claude-code)

---------

Co-authored-by: Claude Opus 5.5 <noreply@anthropic.com>
2026-11-05 01:10:19 -06:00
..

@paperclipai/plugin-daytona

Published Daytona sandbox provider plugin for Paperclip.

This package lives in the Paperclip monorepo, but it is intentionally excluded from the root pnpm workspace and shaped to publish and install like a standalone npm package. That lets operators install it from the Plugins page by package name without introducing root lockfile churn for Daytona's SDK dependencies.

Install

From a Paperclip instance, install:

@paperclipai/plugin-daytona

The host plugin installer runs npm install into the managed plugin directory, so transitive dependencies such as @daytonaio/sdk are pulled in during installation.

Configuration

Configure Daytona from Instance Settings -> Environments, not from the plugin's plugin page.

  • Put the Daytona API key on the sandbox environment itself.
  • When you save an environment, Paperclip stores pasted API keys as company secrets.
  • DAYTONA_API_KEY remains an optional host-level fallback when an environment omits the key.
  • Optional apiUrl and target settings map directly to the Daytona SDK/client configuration. If apiUrl is omitted, the Daytona SDK uses its default endpoint.

Notes:

  • The current published Daytona SDK package is @daytonaio/sdk.
  • The driver supports both snapshot-based and image-based sandbox creation. If both are set, validation rejects the config as ambiguous.
  • Optional ttlMinutes sets a positive whole-minute wall-clock lifetime in the creation request. It applies to image and snapshot sandboxes, including probes and interactive setup. The driver requires the provider to confirm the expiry before it returns the sandbox. It preserves an earlier creation expiry when a caller supplies a later deadline. Daytona destroys the sandbox and its files at expiry, even while active, stopped, paused, or archived. Omit this setting to keep existing lifetime behavior. This is separate from inactivity cleanup.
  • Each cold create uses a unique provider name and ownership labels. If creation fails after Daytona has allocated a sandbox, the driver looks up that exact name, checks every ownership label, and waits for deletion. Failed, missing, or timed-out lookups and failed deletions report unconfirmed cleanup with the provider name; they never return a usable lease. A missing name lookup after an uncertain create is not proof that a delayed provider request cannot create a resource.
  • For plugin-backed sandbox lease acquisition, unresolved creation cleanup crosses the worker RPC as a validated ownership envelope. The host records pending_cleanup before retrying deletion. If only a creation name is known, the provider first returns an ownership-verified sandbox ID without deleting it. The host saves that observation before authorizing deletion. Its existing cleanup sweep and durable spool preserve retries across controller restarts and environment deletion. A missing observed ID confirms cleanup after a lost deletion reply or database update; a name that has never been observed remains unresolved. Provider exceptions and resolved credentials are excluded from that envelope. This requires the matching host and plugin SDK update; probe and custom-image interactive-setup calls still report unconfirmed immediate cleanup without this lease-recovery path.
  • Reusable leases map to Daytona stop/start semantics. Non-reusable leases are deleted on release. A provider-resolved target does not change the identity of an existing sandbox. Release closes the same scoped lease that a later sentinel-verified resume reopens.
  • Idle sleep tracks pending hooks, underlying provider requests, open terminals, and sandbox allocations. A successful stop or delete clears only that sandbox's company, environment, and account scope. Every sandbox deletion waits for completed remote destruction within its existing timeout; acceptance alone cannot clear idle evidence. A timeout does not settle the underlying request. Cleanup that overlaps other work on the same sandbox needs a later quiet stop/delete receipt or read-only observation of the exact stopped or missing sandbox. Proof is captured before the provider observation. Other work that starts or finishes before its reply invalidates that proof, even after the other request has settled. An unobserved creation name is never absence proof. Active resources and uncertain cleanup continue to prevent idle sleep; verified cleanup no longer blocks sleep for the worker's entire lifetime.
  • A command that has already exited returns its final separated log snapshot without opening a follow socket. The initial status check is bounded to 500ms and the caller's command deadline. Each follow connection also makes up to four early status reads, with 25/50/100/200ms delays and the same observation/deadline bounds. A confirmed exit still requires the final separated snapshot, but does not wait for the follow socket to close. Unconfirmed or unavailable status keeps streaming; the early reads stop after their bounded attempt window. The command is dispatched only once.
  • A session log socket can close while its command still runs. The driver requires a recorded command exit before returning a completed execution. It reconnects the log stream once, then polls status and log snapshots at most once per second. Replayed output is removed by byte offset, new output continues to reach the host, and the command is never dispatched again. A socket that delivers no output for 15 seconds switches directly to polling, even if the socket stays open or its initial connection never completes. Late callbacks from that socket are ignored. This recovers pending permission requests and cancellation results from saved output without replaying the command. Healthy initial and reconnected streams retain their existing lifetime under the caller’s RPC/run guard. After a clean close or an idle socket, each status or snapshot read gets a fresh operation timeout; successful recovery polling does not impose a new command lifetime. When both stream attempts fail without a clean close, fallback retains its original timeout budget starting after the stream attempts.
  • The SDK returns full log snapshots, so fallback bandwidth grows with retained output; it has no paged snapshot or stream cancellation API. A recovery-read timeout keeps partial output and explicitly reports whether command exit remains unconfirmed; it does not prove the remote command stopped. Provider/session teardown remains responsible for closing an outstanding socket. A final snapshot reconciles bytes missed by the stream before returning a recorded exit.
  • A sandbox record can survive the loss of its underlying container. Resume treats it as expired only when a fresh provider read confirms the exact missing-container error for that sandbox and marks it unrecoverable. Unknown errors and failed confirmation reads preserve the lease. The host still requires a verified native-runner backup before replacement.
  • Daytona rejects Stop for a sandbox in its error state, for example after the sandbox disk fills. The stop-only hook confirms the retention policy first. If Daytona marks the error recoverable, the hook calls Recover once and waits at most 20 seconds for the sandbox to start. Then it stops the sandbox normally. The hook never calls Recover a second time in the same call. An unrecoverable error, a sandbox that is back in error after recovery, or an unfinished recovery returns a typed PluginEnvironmentStopError instead of the generic stop error. The sandbox is never deleted.
  • Directory export normally builds a sandbox archive and downloads it. If archive creation exhausts disk space, quota, or the file-size limit, export streams the archive through a raw terminal instead. Each bounded chunk waits for a host write acknowledgement. Import still requires successful tar completion and the existing archive/path validation. The total archive cannot exceed the provider-reported sandbox disk allocation, and each host write must leave a 1 GiB free-space reserve. This fallback writes no sandbox archive or command log, preserves source files, and retains the configured transfer timeout. Terminal cleanup has a separate five-second limit and cannot hold the host archive open. It requires Bash and GNU tar, dd, and base64 in the sandbox. It does not repair a provider session that already failed to save its state or increase the sandbox's disk allocation.
  • Single-file export normally downloads a guarded sandbox copy. If that copy exhausts disk space, quota, or the file-size limit, the provider removes partial copies and streams the source through the same bounded sandbox-user channel. The stream rechecks canonical confinement and regular-file identity, refuses a symlink at open, and publishes host files only after a successful transfer receipt. It never hands a mutable source to the privileged download API. Permission, confinement, and transport failures still fail; a failed stream leaves prior host files intact. This removes the second archive-sized copy needed to download an already captured workspace archive. Creating the workspace archive itself still needs sandbox space.

Local development

cd packages/plugins/sandbox-providers/daytona
pnpm install --ignore-workspace --no-lockfile
pnpm build
pnpm test
pnpm exec vitest run --config vitest.sdk-ingress.config.ts
pnpm typecheck

These commands assume the repo root has already been installed once so the local @paperclipai/plugin-sdk workspace package is available to the compiler during development.

The dedicated vitest.sdk-ingress.config.ts requires this package's installed, pinned Daytona SDK. It sends local HTTP faults through the real SDK and worker RPC without a provider account or sandbox. The root workspace does not install standalone provider dependencies; its normal Daytona tests use mocked SDK boundaries. This target fails if the SDK is missing and runs all ingress acceptance cases without a conditional skip.

The capacity regression uses Python 3 for a real local PTY, Bash, and GNU core utilities (gtar, gdd, and gbase64 on macOS). It skips when those prerequisites are unavailable or their version checks do not match. With DAYTONA_API_KEY set, run pnpm test src/file-sync-capacity.live.test.ts to exercise an actual stopped and resumed Daytona sandbox, tar and file-copy writes to /dev/full, validated exports, and second exports after reconnect. Each case creates and deletes one disposable 1 GiB Ubuntu sandbox; it does not fill a disk or modify existing sandboxes.

Package layout

  • src/manifest.ts declares the sandbox-provider driver metadata
  • src/plugin.ts implements the environment lifecycle hooks
  • paperclipPlugin.manifest and paperclipPlugin.worker point the host at the built plugin entrypoints in dist/

Interrupted run-lease creation

The host commits a company-scoped creation operation before acquiring a new run lease. The operation UUID becomes paperclip-create-<uuid> and the paperclip-create-attempt label. The existing inspection hook can resolve that name and validate company, environment and run labels without starting a sandbox. Recovery persists the observed provider ID before the existing cleanup worker deletes it. A missing creation name is an uncertain outcome, not proof of removal. The host retains that operation for manual reconciliation and never repeats the creation request blindly. Credential identity must still match admission.

This capability is declared as creationOperationVersion: 1 in manifest version 0.1.10. It covers normal run/ad-hoc lease acquisition and plugin task replacement. Legacy provider environmentProbe and custom-image interactive setup have separate lifecycles and are outside this lease-orphan fallback replacement. The normal Test path which acquires a runtime lease is covered. Unit fixtures exercise lookup and deletion; live provider qualification requires an explicit disposable test account.