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## Thinking Path > - Paperclip is the open source app people use to manage AI agents for work > - Native runs execute through a Runner (`paperclip-runnerd`) inside a remote sandbox. Daytona reaches every Runner through one fixed preview port (43127), so a sandbox serves one listening Runner at a time. > - A warm sandbox is reused by the next run of the same task. That run often opens a new session, so it neither adopts the previous run's warm Runner nor retires it. Retirement of another session's warm owner works only through the in-memory warm registry of the server that launched it. > - After a server restart (or on another server), that registry is empty. The previous run's idle warm Runner keeps the port, and every new launch fails with `runner_ingress_bind_conflict` until the bounded retry runs out. > - This pull request finds such a holder on the sandbox before launch and proves from durable records whether it may be stopped. A finished run's idle Runner is stopped through its verified process identity. Any other holder sends the run to the fresh-sandbox fallback from #20863 and is never stopped. > - The benefit is that a follow-up run after a restart starts on its reused sandbox instead of colliding with its predecessor and needing Retry. ## Linked Issues or Issue Description **What happened?** Restart-chaos wave `w-20261111T230537-s6402` (Claude through ACPX, Daytona warm sandboxes, `--ephemeral-server`, K1/K2/K15 with `--k15-fresh-home`, seed 6402, master, no injected fault) needed Retry on 4 of 6 tasks. Each failing run's first Runner failed with `runner_ingress_bind_conflict: failed to bind listener: Address already in use`. The harness's sandbox captures name the process holding port 43127 at the time. In every case it was the previous, already `succeeded` run of the same task, started under the server generation before the restart: | Task | Failing run | Port 43127 held by | Holder run status | | --- | --- | --- | --- | | t01 | b4769dfd | 395b202d (Runner started 23:11:30) | succeeded 23:12:19 | | t05 | b6d466fd | 0969ad46 (23:11:29) | succeeded 23:12:18 | | t02 | 4097fc1f | 527a1659 (23:11:28) | succeeded 23:12:17 | | t03 | 60d821af | 1c06bf75 (23:11:28) | succeeded 23:12:25 | **Root cause** Warm owners are tracked only in the process-local `warmNativeSessions` map in `server/src/services/native-runtime/native-session-executor.ts`. `claimWarmNativeInstructionCopy`, `reserveWarmNativeInstructionDirectory` and the same-session admission path retire a predecessor only when it is in that map. A restarted server has an empty map. The follow-up run uses a new session, so `inspectRemoteWarmSessionRecovery` (same session only) does not adopt it either. The launch then meets the old Runner on the fixed port. `stopStaleRemoteRunnerBeforeBootstrap` stops only the run's own Runner, so the same-run retries collide again. **Expected behavior** A finished predecessor's idle warm Runner is retired before the next Runner launches on the same sandbox, wherever it was launched. A holder that cannot be proven safe to stop is never stopped, and the run moves to a fresh sandbox. ## What Changed - New `server/src/services/native-runtime/sandbox-runner-port-holders.ts`: `retireSandboxRunnerPortHolders` lists every other session's Runner on the sandbox (session roots with a `runner-process.identity`; this run's own root and moved-aside roots are skipped). It checks each one with the existing verified process check (`REMOTE_RECOVERY_PROCESS_CHECK_SCRIPT`: pid, runner id in the command line and, when recorded, the boot generation). Then, for a live holder: - Registered in this server's warm registry: it is retired through `retireWarmPredecessor`. - Its company-scoped run row is `succeeded` or `cancelled`, for the same agent, and its Runner state is idle (empty outbox, no pending terminal delivery, and both saved fences `pendingProviderCleanup` and `warmTransition` clear): it is stopped through the verified identity (`TERM`, then `KILL`, each with a bounded wait). An activity log entry `native.runner_port_holder_retired` is written. - When the inventory command itself cannot run, the holder state is unproven, so the run takes the fresh-sandbox fallback. - Anything else (a live run, a failed or interrupted run that may still be resumed, an unknown owner, work in the outbox, an unverifiable or changed identity marker, or a stop that is not confirmed): `NativePredecessorRetirementUnprovenError`. Before any process start, the existing #20863 path marks the lease replace-before-reuse and re-queues the run in the uncharged lane on a fresh sandbox. - `executePaperclipNativeSessionAttempt` runs this check before `native.process_start_requested`, and only for a resumed (reused) sandbox launched through a shell runner without a warm session to reuse and without a reattach recovery. A created or replacement sandbox cannot hold another session's Runner, so it adds no command there. ## Verification - `pnpm --filter @paperclipai/server exec vitest run src/services/native-runtime/sandbox-runner-port-holders.integration.test.ts` (embedded Postgres, real processes): two Runners contend for one real port. The second bind first fails with `EADDRINUSE`, the same failure as staging. After `retireSandboxRunnerPortHolders` the finished run's holder has exited and the bind succeeds, with the activity entry recorded. The commands run through a confined runner that refuses any path outside the sandbox workspace base. A holder owned by a live run, by a finished run with work in its outbox, by a cancelled run with pending provider cleanup, or by no recorded run is never stopped: the call raises `NativePredecessorRetirementUnprovenError` (`runner_port_holder_owner_not_settled` / `runner_port_holder_unknown_owner`) and the port stays held. This run's own session, moved-aside roots and exited holders are ignored. - `native-warm-checkpoint-ownership.integration.test.ts`: its fixture sandbox runner now answers the inventory command with an empty list (that sandbox has no other Runner); all 9 cells pass. - `native-session-executor.test.ts`: 1406 of 1406 pass. Server `tsc --noEmit` passes. - Chaos results are in a comment below. ## Risks - A finished run's idle warm Runner is stopped earlier than its idle timeout. It held no unsaved work (its run is `succeeded` or `cancelled` and its outbox is empty), and SIGTERM is the same stop as its idle close. Only that warm reuse is lost. - Failed and interrupted holders are not stopped, because their run may still reattach. Such a run goes to a fresh sandbox instead. - One extra sandbox command before launch on a reused sandbox for a cold launch, no wait and no file changes. A warm reuse and a reattach skip it. - Not changed: a bind conflict from a holder that is not a Runner (no identity file) still uses the existing same-run bootstrap budget. ## Model Used - Claude Opus 5.5 (`claude-opus-5-5`), Anthropic, through Claude Code with tool use (shell, file edit, test runs). Default context window, extended reasoning on. ## Checklist - [x] I have included a thinking path that traces from project context to this change - [x] I have specified the model used (with version and capability details) - [x] I have checked ROADMAP.md and confirmed this PR does not duplicate planned core work - [x] I have searched GitHub for duplicate or related PRs and linked them above - [x] I have either (a) linked existing issues with `Fixes: #` / `Closes #` / `Refs #` OR (b) described the issue in-PR following the relevant issue template - [x] I have not referenced internal/instance-local Paperclip issues or links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip` URLs) - [x] My branch name describes the change (e.g. `docs/...`, `fix/...`) and contains no internal Paperclip ticket id or instance-derived details - [x] I have run tests locally and they pass - [x] I have added or updated tests where applicable - [x] I have updated relevant documentation to reflect my changes - [x] I have considered and documented any risks above - [ ] All Paperclip CI gates are green - [ ] Greptile is 5/5 with no open P2s, recommendations, or follow-ups - [x] I will address all Greptile and reviewer comments before requesting merge Refs #20863, #20953, #20972, #20992. 🤖 Generated with [Claude Code](https://claude.com/claude-code) --------- Co-authored-by: Claude Opus 5.5 <noreply@anthropic.com>