## Thinking Path > - Paperclip must keep admitted remote work alive while its main server is replaced. > - Runner owns recovery mechanics and exposes opaque checkpoints through #17097. > - The server owns company scope, encryption, Stop, tool authority and execution ownership. > - A successor must prove current ownership before it adopts the original execution. > - Checkpoint bursts must also leave capacity for normal requests and lease renewal. > - This PR persists and adopts that authority through the existing runtime boundaries. ## Linked Issues or Issue Description **What existing behavior does this improve?** Remote agents retain the original execution during a bounded main-server outage. **Current behavior** A server restart can lose the controller's local state and connection. An unsafe replacement could repeat a turn or an uncertain mutation. Checkpoint writes in the request pool can also delay ordinary requests during an aligned burst. **Proposed behavior** Restore encrypted control records from Postgres and adopt the original runner under a fenced lease. Recover known tool receipts through current tool authority. Give control checkpoints a shared pool capped at two connections per database owner. Depends on #17097. Successors are #17455 and #17456. Qualification and presentation remain separate review slices. ## What Changed - Add company/run-bound encrypted checkpoint records and migration 0394. Keep the SQL idempotent after renumbering against current master. - Recover startup and expired ownership through native runtime and heartbeat. Preserve the sandbox lease, admitted runner artifact, harness configuration, native session and active turn. - Keep Stop, finalization, preparation ownership and stale-writer fencing transactional. Preserve graceful detach and natural crash takeover. - Recover committed tool receipts through the existing authority. Reauthorize reads and hold uncertain mutations. - Bound startup retention with the existing coordinator and preserve zero idle scans. - Share at most two checkpoint connections per database client. Keep application and liveness capacity separate. Close the checkpoint pool during shutdown; late writes cannot reopen it. - Count SQL across both application and checkpoint clients. Prove request/liveness progress, command recovery and failure after pool shutdown with real Postgres. ## Verification Project creation recovery now uses the existing project activity receipt owner. It retains authenticated input normalization, fingerprint checks and current run authority after the receipt lock. An absent receipt returns no result before mutation. The new lost-HTTP-response and no-effect regression uses real API routes and Postgres. The seven transport cases pass locally. This Mac skips all 20 database cases. On current source `5de803c2cd`, Linux [job 122593415890](https://github.com/paperclipai/paperclip/actions/runs/40620576702/job/122593415890) executes all 20 project-tool cases successfully (9.480 seconds), including the committed-project lost-response regression. Its shard passes 1,627 cases with three unrelated skips. Server typecheck passes. The transport regression initially has two failures; a subsequent incorrect expectation about schema defaults was corrected before the final pass. Ordinary execution adds no checkpoint writes or recurring work. Current candidate `5de803c2cd` includes the project-creation receipt recovery fix and master `2cd747d1b6`. Migration 0394 retains the prior idempotent checkpoint DDL. Every master SQL file and journal entry is preserved. Snapshots 0390–0394, migration checks and server typecheck pass. The ordinary warm-turn regression fails on its second turn before `a219ab51ad`. After correction, three completed warm turns select the correct prior checkpoint and preserve the original session. All 288 provider-wiring cases pass. The control plane, external persistence callback, identity rotation and filesystem are real; the backend and database-load seam are scripted. The 13 warm admission/configuration variants also pass after final master integration. This does not qualify an underlying harness. At current source `5de803c2cd`, Linux [job 122593415907](https://github.com/paperclipai/paperclip/actions/runs/40620576702/job/122593415907) passes all 940 native-session-executor cases (61.431 seconds), including the warm external-checkpoint behavior; the shard passes 2,358 cases with one skip. Current [Runner job 122593415475](https://github.com/paperclipai/paperclip/actions/runs/40620576702/job/122593415475) passes the native recovery lane: 115 passes and five container-only skips, including the encrypted restore guard, fresh preparation (63.189 seconds), blocked claim lock (1.226 seconds) and recovery beyond 101 blocked owners (3.897 seconds). The first lane passes 2,215 cases with one skip. The SQL cost test reports zero idle and streaming SQL for both output volumes; this is component evidence, not a production capacity claim. At prior candidate `1ff7bb44f4`, Linux job 122549307215 passes all 938 native-executor cases, including the three-turn external-checkpoint regression. Job 122549306469 passes the native recovery lane with 115 passes and five container-only skips, including the encrypted-restore session guard, fresh preparation (63.664 seconds), claim-lock contention (3.961 seconds), and 101-owner recovery (3.824 seconds). This Mac skips the real-Postgres suite. The earlier full local executor attempt has 921 passes and 16 failures during embedded-Postgres initialization before assertions. The original fixture collisions and their corrections remain recorded. At earlier candidate `8fbe62b41d`, server shard job 122535673841 has 3,876 passes, one failure and one skip in an unchanged expiry-worker retry/drain timing test. The same server/database tree on qualification source `b64cac6951` passes all 20 expiry cases and all 3,877 shard cases. The single diagnostic retry, job 122541891915, passes all 20 expiry cases and all 3,877 shard cases (one skip). No assertion was weakened. The original failure remains recorded and its exact timing race is not proven. All Actions checks and legacy status passed on `8fbe62b41d`, with completed Greptile 5/5 and no open feedback. The next candidate `1ff7bb44f4` also passed all Actions checks and Greptile 5/5. Its Paperclip Review remained queued before the new master conflict required integration. The new candidate needs fresh exact-head CI and reviews; old checks do not qualify it. Migration generation is checkpoint-only, all master SQL and journal entries remain unchanged, and migration checks, server typecheck and all 13 warm-owner variants pass after integration. The first migration check was blocked by TSX sandbox IPC; its permitted repeat passes. The first warm-test command used an incorrect path and ran no tests; the corrected command supplies the 13-case receipt. All 16 database pool-lifetime/options/teardown cases pass after granting loopback permission; the first batch had two EPERM failures and 14 passes. Earlier semantic-tool/HTTP recovery, adoption, encryption-batch, zero-streaming-write and idle-SQL receipts remain source-attributed in the [qualification record](https://github.com/paperclipai/paperclip/blob/2ff66f57da0da35bac1c19a2366ea4b84d87a986/doc/plans/2026-10-22-hot-upgrade-qualification.md). That record retains earlier assertion, setup and cleanup failures and their corrections. No failed gate is waived. The historical 300-session component campaign passes four after phases: steady read p99 is 107–108 ms at 500 reads/s and 100 writes/s; aligned-burst read p99 is 103–105 ms after the bounded pool, versus 584–689 ms before. This comparison isolates the persistence corrections. It does not measure the final stack's hosted active-agent capacity. The hosted zero-agent API pair leaves SQL and CPU essentially unchanged, but both arms fail absolute latency gates and candidate peak cgroup memory fails its gate. The active-agent/viewer matrix, different-artifact upgrade and rollback remain open. Run `PAPERCLIP_TEST_DATABASE_URL=<owned-disposable-postgres> pnpm --filter @paperclipai/server exec vitest run src/services/native-runtime/native-runner-restart-recovery.integration.test.ts`. Previous head `f2db8a6568` had one failed workspace setup gate: [job 122555672441](https://github.com/paperclipai/paperclip/actions/runs/40608984238/job/122555672441) passes all 4,169 UI tests and 285 CLI cases (one skip), but the company import/export suite reaches its 30-second health deadline during doctor startup. Its output does not reach the server-start step. The CLI, server, database, shared, adapter and plugin trees are identical on qualification source `a866619d7b`, whose [job 122555886663](https://github.com/paperclipai/paperclip/actions/runs/40609057937/job/122555886663) passes that fixture and all 286 CLI cases. The one diagnostic retry, [job 122561057225](https://github.com/paperclipai/paperclip/actions/runs/40608984238/job/122561057225), passes the formerly failing fixture and all 286 CLI cases. All Actions checks and legacy status on `f2db8a6568` pass. Its exact-head Greptile completed at 5/5 with no open feedback. The current integrated head requires fresh checks and a completed Paperclip Review before merge. The original failure remains recorded; its exact timing cause is unproven. A repeated failure requires investigation and repair rather than another retry. All current-head CI, legacy status, exact-head completed Greptile 5/5, resolved feedback and ordinary GitHub merge eligibility remain required before merge. The latest integration preserves master’s published Copilot v70 profiles and every published migration. Checkpoint migration `0394_conscious_whizzer.sql` was generated with `pnpm db:generate` and retains the prior idempotent DDL. The Runner vendor rebuild and replay parity checks pass. Server typecheck and all 13 warm-owner variants pass after that rebuild. The imported report-lock patch is byte-identical to master; its intentional patch-context whitespace is retained, and the feature delta passes whitespace checks. No hosted experiment was run. ## Risks The pool adds up to two active connections per instance, shared across agents. Checkpoint delivery can wait behind that bound; it still requires its commit. Steady component-test Postgres CPU rises by about 1.7 percentage points of a two-CPU allocation. These corrections do not remove the stack's control and renewal writes. The migration and key must survive replacement. Fresh-database tests and local load do not establish different-artifact hosted upgrade or rollback continuity. ## Model Used OpenAI GPT-6 through Codex, with reasoning, repository tools and code execution. The runtime does not expose a more specific model ID or context-window size. ## Checklist - [x] I have included a thinking path that traces from project context to this change - [x] I have specified the model used (with version and capability details) - [x] I have checked ROADMAP.md and confirmed this PR does not duplicate planned core work - [x] I have searched GitHub for duplicate or related PRs and linked them above - [x] I have either (a) linked existing issues with `Fixes: #` / `Closes #` / `Refs #` OR (b) described the issue in-PR following the relevant issue template - [x] I have not referenced internal/instance-local Paperclip issues or links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip` URLs) - [x] My branch name describes the change (e.g. `docs/...`, `fix/...`) and contains no internal Paperclip ticket id or instance-derived details - [ ] I have run tests locally and they pass - [x] I have added or updated tests where applicable - [x] I have updated relevant documentation to reflect my changes - [x] I have considered and documented any risks above - [ ] All Paperclip CI gates are green - [ ] Greptile is 5/5 with no open P2s, recommendations, or follow-ups - [x] I will address all Greptile and reviewer comments before requesting merge --------- Co-authored-by: Paperclip <noreply@paperclip.ing>
Paperclip maps
The maps describe the same capabilities from two perspectives:
- Feature map: what a person can do, where to reach it, and how to verify the user journey. Preserve its Poteto format.
- Agent access map: the APIs and agent entry points for those capabilities, their permission boundaries, and access verification.
The chat scenario catalog adds natural-language requests, starting context and expected conversational outcomes for the same capability IDs. It lives with Product E2E as planning data; a scenario reference is neither a registered execution nor evidence that a journey passed.
These are sibling directories under maps/. Each feature file has a same-named
agent access companion. Reuse the product map's sub-feature IDs, so tasks/create
identifies the same capability in both maps. Product behavior remains governed by
the implementation spec; a map cannot grant
authority or redefine a permission denial as success.
Capability identifiers
The feature ID is the recipe filename without .md, such as onboarding.
The full capability ID joins that feature ID and a Sub-features key with /:
the company key in feature-map/onboarding.md is onboarding/company.
Its agent-access-map/onboarding.md companion uses the same local company key.
The feature-map index lists the existing
feature and full capability IDs.
Each child page states Feature ID: `onboarding`. after its introduction or
product-map link. In feature recipes, show the full ID beside the parsed local
key: - `company`: `onboarding/company` — create a company. In access
companions and Storybook verification guidance, keep the existing local heading
and put Capability ID: `onboarding/company`. beneath it. These labels make
the existing identifiers visible without changing keys, anchors, or ID generation.
Use full capability IDs in cross-feature references, Storybook annotations, tests, issues, PRs, and verification evidence. Both segments use lowercase letters, digits, and hyphens. Keep filenames and keys stable when display titles or navigation labels change; renaming either changes the capability ID.
Entry-point IDs describe a surface, such as web-wizard, and are scoped to their
recipe. Reference them with a recipe link, such as
onboarding.md#web-wizard, and record the
capability exercised separately. Navigation section labels are not capability IDs.
See IDs and references for examples.
Access contract
Every business operation needs both an API and a usable agent entry point for an
actor authorized to perform it. A dedicated tool is optional when REST, the CLI,
an assigned MCP client, or native search_api / call_api already provides the
operation. Record which agent surfaces actually have that path; an installed CLI
or optional MCP package cannot be assumed available to every native/remote run.
Track these independently:
| Dimension | Values and meaning |
|---|---|
| API | present, missing, not-applicable, or unreviewed. Use exact methods/paths; distinguish protocols from REST. |
| Agent access | available, partial, missing, restricted, operator-only, not-applicable, or unreviewed. Name the supported surface and actual entry point. |
| Policy | Actor, action/grant, company/resource/ownership scope, responsible-user intersection, run requirements, work modes, and gates relevant to the operation. |
| Evidence | source-only, verified, failed, blocked, or not-run. Source presence and successful board calls are not agent verification. |
| Review depth | baseline records representative operations and known gaps; operation-reviewed enumerates the capability's meaningful operations and their individual access contracts. |
Broad capabilities such as task properties must be split into operations before they count as operation-reviewed: renaming, metadata edits, assignment, dependencies, and lifecycle changes can use different tools and permission rules. An available read path cannot certify a write path. List/get/create/update/delete, execution/control, credential handling, and resolution are separate where their authority or transport differs. Do not duplicate request schemas from OpenAPI.
Exceptions and restrictions
Presentation-only state, static developer fixtures, and pre-start/local operator
work may use not-applicable for a domain API, with a concrete reason and the
existing local path. When a capability combines shared data with presentation,
split the operations: browser recents do not exempt resource lookup from API
coverage. Promoting local state to a shared feature requires revisiting the entry.
A board-only endpoint is restricted for agent identity, not an automatic
exception or a missing API. Cite the enforced policy and record whether the
agent can request the authorized human's action and observe its result. An
unresolved delegation question remains in Gaps. Company access, a job title,
a personal assistant's OAuth grant, or an accepted interaction does not grant
board identity. Keep budget, approval, secret and execution authority intact.
Check actual route/service authorization and production tool admission. OpenAPI actor labels and scenario/evaluation tool declarations are supporting metadata; record disagreements rather than using them as proof of access. Native API fallback restrictions, tool field/scope limits, and rollout settings are part of the agent path, even when a legacy agent can call the REST endpoint directly.
Companion file format
Each agent-access-map/<area>.md has an H1, a relative link to its product file,
and its feature ID, followed by one H2 backticked local key per product
sub-feature. Each capability starts with its full capability ID and contains
these fields:
- Review:
baselineoroperation-reviewed. - API: presence state and exact operation IDs, or a reasoned exception.
- Agent access: availability state and concrete entry points by surface.
- Policy: relevant permission and runtime boundaries, with source references.
- Evidence: evidence state, reviewed commit and sources or executed proof.
- Verification: allowed/denied assertions and observable result; record what has actually run separately from the proposed recipe.
- Gaps: missing APIs/paths, discovery drift, unreviewed operations or policy
decisions; use
noneonly for the enumerated scope that was reviewed.
For an operation-reviewed capability, use H3 backticked operation IDs and repeat
API, Agent access, Policy, Evidence, Verification and Gaps for each operation.
Use small operation names such as create, update, read, or run-now.
The enclosing capability has Review: operation-reviewed only after its
meaningful operations have been enumerated. The following excerpt shows one
operation; include the others before using that review label:
## `definition`
Review: `operation-reviewed`.
### `create`
API: `present` — POST /api/companies/{companyId}/routines.
Agent access: `available` — agent REST, CLI routine create and native call_api
under the enabled rollout and active-run/mode gates.
Policy: same company; assigneeAgentId must be the calling agent; cite the
routine authorization and native API policy sources.
Evidence: `source-only` — reviewed commit and source links; no live proof.
Verification: `not-run` — create an owned routine; reject assignment to another
agent; inspect saved configuration, attribution and retry behavior.
Gaps: verify ownership and responsible-user resolution with a permitted agent
context; source presence alone does not qualify this operation.
Keeping the maps synchronized
When a change adds/removes a capability or changes its behavior, API, permission, tool binding, CLI support, or work mode, update the affected companion and product recipe as appropriate in the same change. Preserve IDs across renames where the capability is unchanged; update the affected cross-links together. Indexes discover recipes automatically. An API-only change may update the companion without rewriting unchanged user instructions. Update the corresponding chat scenarios when their request, assumptions or expected outcome changes; use multiple cases for meaningfully different starting conditions rather than treating an API path as conversational coverage.
maintain-verification-skill owns reconciliation of both maps. It follows changed source and authorization, checks real agent reachability, and records product gaps without implementing them during a maintenance pass. The creation skill uses this structure. verify-paperclip consumes the relevant recipes and reports evidence/drift; map editing belongs to maintenance.
Run the structural check after map changes:
node scripts/check-maps.mjs
It checks paired areas/IDs, navigation metadata, required fields, and local references. It does not certify endpoint authorization, production bindings, operation completeness, or live behavior. Source audits must check those against the existing API and tool contracts; avoid a second schema catalog or runtime.
For live access proof, use Paperclip's existing API/runner/MCP fixtures or an owned
isolated instance. Use the actual agent identity, target and work mode. Assert the
allowed result and relevant denial (another company/private resource, wrong
owner, missing grant, invalid run, restricted mode or resolver). Mutations also
need persisted state/attribution and retry behavior. Capture evidence using the
existing artifact workflow; keep executed run results
separate from generated maps/generated/coverage.json, which lists page references.
Local authorship and generated indexes
Change only the recipes, access contracts and stories whose behavior or intent
changed. Feature recipes own navigation metadata; stories own small
parameters.paperclip annotations. Keep the feature-map README's readable ID
index aligned with those sources; it does not register entries for generation.
Do not refresh counts in shared READMEs, inventories, fingerprints or review
journals.
node scripts/storybook-catalog.mjs validates and generates aggregate navigation,
Storybook data, verification routes and the page inventory. All outputs live in
ignored maps/generated/, ui/storybook/generated/, and the ignored Storybook
preview.tsx wrapper. Start/build and UI typechecking generate their own inputs.
A clean merged checkout therefore assembles both branches' changes automatically.
Git provides history and diffs. PRs, issues and CI artifacts retain review/run evidence for the named revision. Capability associations do not create whole-file review dependencies. Keep durable scenario limits in the affected recipe or story.