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## Thinking Path > - Paperclip is the open source app people use to manage AI agents for work. > - The Claude CLI adapter resumes task sessions between runs. > - Each run now receives a private copy of the agent files. > - The adapter put that copy's path in the cached system instructions. > - The new run ID changed the prompt bundle even when all instructions and skills stayed the same. > - This pull request sends the current file location with each run's prompt and keeps it out of the stable bundle. > - Agents can resume unchanged task sessions and use the current working copy. ## Linked Issues or Issue Description Fixes: #15373 Refs #14420, which introduced the per-run agent directory copies. Related PRs checked: #5699 changes the fingerprint algorithm, and #12034 handles saved sessions without a bundle key. Neither fixes this working-copy path regression. ## What Changed - Keep instruction and skill contents in the cached system prompt. Supply the current instruction path and relative-file base in every run prompt, including resumed turns and fresh retries. - Report a cwd or execution-target mismatch only when that value differs. A bundle mismatch no longer produces a false cwd warning. - Add a four-run regression: initial run, relocated copy, changed instructions, and changed skill contents. Check the CLI arguments, bundle keys, current file guidance, and reset logs. - Cover and explain remote-to-local execution resets, even when the working directory matches. - Update the agent-file documentation and existing resume/fallback assertions. ## Verification - **Red:** With only the new regression test added, the second run fails because the CLI arguments do not contain `--resume`. - **Green:** All 64 tests pass in the command below. This uses a fake Claude subprocess and real adapter execution, file caching, and session serialization; it does not call a paid model. ```sh pnpm exec vitest run server/src/__tests__/claude-local-execute.test.ts packages/adapters/claude-local/src/server/execute.remote.test.ts packages/adapters/claude-local/src/server/execute.acp-fallback.test.ts server/src/__tests__/adapter-session-codecs.test.ts ``` - Repository-wide `pnpm -r typecheck` and `pnpm build`: passed. The adapter typecheck, build, and all 64 focused tests also pass after the review fix. - Local `pnpm test:run` was stopped after it reported a failure in the unchanged native-session recovery database orchestration test. That test passes in isolation with PostgreSQL enabled (1 passed, 47 filtered out). The full local run did not complete; this is not a clean local full-suite result. All CI checks pass on `a71d23a39f1cc874d23a8715cf29bdea6edbb8ff`, including the full test shards. ## Risks - A session saved with the old path-bearing bundle starts fresh once after upgrade. Later runs resume when instruction and skill contents stay unchanged. - The current location now travels in the run prompt. Stable system guidance directs relative file references to that location, and each turn explicitly replaces earlier locations. - No database, API, authentication, permission, or UI change. ## Model Used OpenAI Codex (GPT-6), with reasoning, repository inspection, code execution, and test tools. The exact deployment model ID and context window are not exposed in this session. ## Checklist - [x] I have included a thinking path that traces from project context to this change - [x] I have specified the model used (with version and capability details) - [x] I have checked ROADMAP.md and confirmed this PR does not duplicate planned core work - [x] I have searched GitHub for duplicate or related PRs and linked them above - [x] I have either (a) linked existing issues with `Fixes: #` / `Closes #` OR (b) described the issue in-PR following the relevant issue template - [x] I have not referenced internal/instance-local Paperclip issues or links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip` URLs) - [x] My branch name describes the change (e.g. `docs/...`, `fix/...`) and contains no internal Paperclip ticket id or instance-derived details - [x] I have run tests locally and they pass - [x] I have added or updated tests where applicable - [x] I have updated relevant documentation to reflect my changes - [x] I have considered and documented any risks above - [x] All Paperclip CI gates are green - [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups - [x] I will address all Greptile and reviewer comments before requesting merge --------- Co-authored-by: Paperclip <noreply@paperclip.ing>