## Thinking Path > - Paperclip manages AI agents and their work. > - The native Runner keeps a live provider process between task turns. > - Managed GitHub access used a token tied to one run. > - A new run forced Paperclip to replace that process to replace its token. > - This PR gives the session a stable credential transport and binds each operation to the active run. > - The agent can keep its process while Paperclip checks current identity and grants. ## Linked Issues or Issue Description Follow-up to #13738. Related credential-rotation work: #11770 and #8208 use process replacement for other adapter credentials; this change applies to managed GitHub access in the native Runner. **What happened?** A configured GitHub connection forced a warm native provider process to close at each new run. The saved conversation survived, but the live process did not. **Expected behavior** Keep the warm provider process. Resolve GitHub access for the current run when each command starts. Deny access while idle or after the run ends. **Steps to reproduce** 1. Configure managed GitHub access for a native Runner agent with a warm session. 2. Complete a turn, then send another message to the same task. 3. Observe the provider process close with the reason `warm native session configuration changed`. **Paperclip version or commit** Reproduced on master `8326e33ad`. Rebased onto `e3d8fb087` before submission. **Deployment mode** Local and remote native execution, including the sandbox callback bridge. ## What Changed - Move configured native GitHub transport and launcher ownership from the run to the provider session. - Bind the broker only after the executor acquires session ownership. Clear that binding when the run exits. - Keep the shared live-run, identity, grant, and trust-policy checks for each credential request. - Reject wrong scopes, idle requests, and credential responses that arrive after their run binding changes. - Retire transport and launcher files with the provider session. Keep anonymous commands available if bridge startup fails. - Add red/green executor tests, real subprocess and callback-bridge tests, and database checks. Update the runtime documentation. ## Verification - Before the fix, both new local and remote warm-session reuse tests failed. - After the fix, 435 targeted tests passed across the executor, broker, launcher, token, and database suites. - A real long-lived test process kept the same PID and original environment across two runs, including through the production callback bridge on local test processes. - Server typecheck and TypeScript compilation passed. - Full workspace typecheck and build passed. Server typecheck passed again after the review fix. - The fallback-logging regression failed before the fix; all 9 broker tests pass afterward. - The exact chat sidebar browser scenario passed locally. The initial CI timeout showed failed Vite module downloads; all eight browser shards pass on the latest commit. - All 53 latest-head checks passed, including the full CI test matrix and security checks (two unrelated conditional checks skipped). - The duplicate full local test run was stopped after CI passed; it is not claimed as a completed local pass. Targeted local tests, workspace typecheck/build, and the browser scenario passed. - Greptile reviewed the latest commit at 5/5 with no unresolved findings. - No fresh paid provider or Daytona campaign has run for this change. ## Risks - The broker now lives as long as the provider session. Tests cover idle denial, late cleanup, late responses, shutdown, and failed startup. - Its in-memory authority does not survive a controller restart. Existing checkpoint and process-recovery rules still apply. - Raw GitHub credentials remain confined to individual command processes. The session transport token cannot select a different task, agent, company, or run. - No database migration or public API change. ## Model Used OpenAI Codex, GPT-6, with reasoning, terminal tools, and code execution. The exact serving model ID and context-window size are not exposed in this session. ## Checklist - [x] I have included a thinking path that traces from project context to this change - [x] I have specified the model used (with version and capability details) - [x] I have checked ROADMAP.md and confirmed this PR does not duplicate planned core work - [x] I have searched GitHub for duplicate or related PRs and linked them above - [x] I have either (a) linked existing issues with `Fixes: #` / `Closes #` / `Refs #` OR (b) described the issue in-PR following the relevant issue template - [x] I have not referenced internal/instance-local Paperclip issues or links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip` URLs) - [x] My branch name describes the change (e.g. `docs/...`, `fix/...`) and contains no internal Paperclip ticket id or instance-derived details - [x] I have run tests locally and they pass - [x] I have added or updated tests where applicable - [x] I have updated relevant documentation to reflect my changes - [x] I have considered and documented any risks above - [x] All Paperclip CI gates are green - [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups - [x] I will address all Greptile and reviewer comments before requesting merge --------- Co-authored-by: Paperclip <noreply@paperclip.ing>
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GitHub identity during agent execution
Shared agents use the GitHub connection of the person whose accepted instructions they are executing. Task ownership remains unchanged. GitHub is optional: ordinary work can start without a connection; a private checkout, authenticated API call, or commit can fail when that operation needs credentials or author metadata.
Accepted instructions and continuations
run_identity_contexts records ordered revisions, stored message authors, originating causes, parent contexts, acceptance state, and redacted GitHub outcomes. heartbeat_runs.active_identity_context_id selects the current revision. Existing historical runs are not backfilled with inferred authorship.
Human messages use their stored authenticated author. Queued messages retain their delivery order. Accepting steering reserves a pending revision before delivery, then activates it after the provider acknowledgement. Rejected delivery leaves the prior revision active. An uncertain acknowledgement holds new credential acquisition; a later acknowledgement or its authenticated native event receipt reconciles the reservation. Replays cannot reactivate an older revision. Activation locks the task before the run, matching task and queue mutations so concurrent status changes cannot deadlock identity initialization.
Delegated work and interactions persist their originating context. Retries retain the originating run's active context. Background continuations carry their source run; dependency wakes use the task's continuation context, independently of its owner. Scheduled and webhook routines use the routine's responsible person; manual invocations use the caller, and edits preserve the routine's responsible person.
Managed GitHub operations
Executions with managed GitHub configured receive token-free git and gh launchers. Each launcher invocation resolves one eligible credential from the current run's accepted identity at operation start. A gh command's child Git processes inherit that command's captured identity; later steering does not change already-started operations.
Native runners retain a session-owned broker and launcher path across warm turns. The provider keeps an opaque transport token, not a GitHub credential or the previous run's signed capability. After acquiring exclusive session ownership, the controller binds the broker to the current company, agent, task, and run. Requests cannot choose another run or responsible person. The broker rejects requests while idle and discards credential responses if their run binding changed during acquisition. Each operation still rechecks the live run, accepted identity, grants, and trust policy through the shared credential resolver. Changing run IDs alone no longer replaces the provider process; changes to authentication mode, provider credentials, permissions, or other session configuration retain their existing retirement rules.
The session broker listens only on controller loopback and accepts only its authenticated GitHub credential operation. Remote executions reach it through the existing authenticated callback bridge. Its transport and launchers are retired with the provider session. If remote bridge startup fails, anonymous launchers keep ordinary work available; the next run retries setup with a fresh session. Controller restart/cold recovery still uses the existing checkpoint and process-recovery rules; the broker's in-memory authority is not persisted for adoption.
Other adapters continue using the run-scoped signed capability and public broker endpoint. That endpoint rejects browser origins and session cookies, validates a distinct signed runtime scope, and rechecks the company, agent, and live run. GitHub credentials are returned only to the managed command process, never persisted in identity history or injected into the long-lived provider process.
Low-trust executions cannot receive raw GitHub credentials, including dedicated agent tokens. The broker rechecks current agent, project, task, and retained run policies before credential resolution. An external guest's internal sponsor is accountable for the task, but does not authorize using the sponsor's account. Read-only access must use separately authorized tools that enforce that boundary.
Server-side Git operations and GitHub gateway calls follow the same selection rules. Approved gateway operations retain their signed originating identity. Connection audience and tool policies continue to apply to the selected person's connection. Native catalogs remain stable across identity changes, but each invocation resolves the selected grant again. Personal OAuth secret declarations survive connection pauses and metadata edits.
Managed commands disable ambient Git credential helpers, Git global/system configuration, host GitHub CLI configuration, and host SSH identity access. Per-operation GitHub CLI configuration is isolated in a writable configuration directory beneath the managed launcher directory. Missing credentials clear previous author and token values; no teammate, standing delegation, host token, or company-default user's account is substituted. Anonymous/local operations remain available where supported.
Without a managed identity, local commits can use an explicitly configured
repository identity or git -c user.name=... -c user.email=.... The launcher
leaves author/committer environment variables unset and requires configured
identity instead of guessing the host user's details. Managed shell profiles
remove empty identity overrides after environment merging, so agents do not
need to unset them per command. A captured managed identity still takes
precedence over repository configuration.
Remote launchers prepend their directory to the execution target's effective
PATH. An explicit remote PATH override is preserved; otherwise Paperclip
reads the provider's environment before staging the launcher shell files.
This keeps legacy NVM and user-local agent installations available alongside
newer images with system-wide CLIs. The generated shell files retain that
combined path with managed git and gh first. The launcher directory has
its own CommonJS package scope, so the extensionless Node launchers work
inside repositories that declare "type": "module" without changing the
project's package configuration. Sandbox command checks use
the same sanitized environment as execution, so a CLI visible only in the
provider's default environment cannot pass the launch check. Failed path
discovery stops startup instead of silently falling back to a minimal path.
Scripts that previously read a persistent GH_TOKEN must use managed git, gh, or GitHub gateway tools. Managed execution skips legacy GitHub token bindings in agent, environment, project, and routine configuration before secret preflight. Configure personal or dedicated access through the GitHub connection instead. Directly invoking an unmanaged executable or retaining a token obtained during an earlier invocation is outside the managed invocation contract.
Legacy hosts and networking
When no managed GitHub connection is installed for an agent, standard-trust local and SSH executions retain that execution host's existing Git and GitHub CLI credentials, configuration, credential helpers, and SSH agent. Paperclip does not import controller credentials into an SSH target. Sandbox, plugin, and low-trust executions do not receive this compatibility fallback. Once a managed connection is configured, unavailable or revoked access never falls back to host authentication. Switching modes replaces the provider process while preserving the settled conversation.
Runner network access is independent of GitHub credentials. The controller
enables networking for standard-trust execution. Low-trust runs and runners
without a controller network decision retain a restricted default. An operator
can set PAPERCLIP_RUNNER_NETWORK_ACCESS=disabled to restrict normal execution;
user environment bindings cannot override that decision. Outer execution-
environment network restrictions still apply. The controller projects the assigned worktree's Git metadata paths so
Git can operate without exposing unrelated workspace or provider state. The
sandbox also receives read access to validated provider executable resources
and the target host's DNS and CA files, including resolver symlink targets
outside /etc. Provider credential directories remain isolated.
A managed broker outage does not prevent local Git operations. Launchers clear credentials and run the command without authentication, with a redacted error category identifying configuration setup, transport, or capability rejection. They do not retain a previous operation's token or replay a GitHub operation.
Healthy eligible grants for the same stable GitHub account ID take precedence over duplicates with failed health checks. Credential acquisition can retry once against another grant for that same principal and account, before any GitHub operation begins. Run identity diagnostics include the selected connection and grant IDs, without credential values. Access-refresh conflicts retry once against current state and never turn a concurrency conflict into a reconnect requirement.
Dedicated accounts and diagnostics
An explicit dedicated-agent grant overrides personal selection. Revoked, disabled, unavailable, or ambiguous dedicated grants do not fall back to a person's account. Removing the dedicated configuration restores personal selection.
Connection setup and permissions display: “This agent uses this GitHub account for everyone's work, instead of the person giving instructions.”
The GitHub permissions page shows repositories across all connected accounts in one scrollable list. It has no account filter or repository search. Repository icons, private-repository indicators, refresh, and GitHub configuration links remain available. The “Add More Repos on GitHub” button opens GitHub’s app installation and repository-access setup.
Multiple eligible connections for the same GitHub account are treated as one identity, using GitHub's stable account ID rather than its login. The resolver selects an available grant, preferring the newest authorization with a stable ID tie-breaker. Duplicate eligibility includes an active credential record with the correct owner, the OAuth access-token reference, and repository access metadata. It keeps that grant's credential and connection policy together; it does not combine repository access or bypass connection audiences. Distinct accounts or unidentifiable duplicate grants remain ambiguous. Managed commands print the redacted reason when GitHub access is unavailable, while unrelated local operations can still proceed without credentials.
Run details show identity revisions and redacted GitHub results: responsible person, selected login when available, personal/dedicated source, and an unavailable reason. Tasks do not receive an additional identity indicator or takeover action.
Deployment and verification
Deploy the schema, server broker, launcher staging, and runtime environment contract together. Already-running processes retain their original environment; only newly dispatched processes receive the broker contract. Run-scoped capabilities remain valid only while their bound run is active.
Focused coverage lives in run-identity.test.ts, github-operation-credentials.test.ts, and github-launcher.test.ts, alongside the native steering, gateway, routine, and callback-bridge suites. Live acceptance additionally requires two authenticated Paperclip users, two authorized GitHub accounts, and a designated disposable repository for push verification. Local commit metadata and mocked API results do not replace that live push test.
Release procedure
- Back up the instance database using the normal deployment procedure.
- Build and deploy one revision containing migrations 0240–0245, the server broker, managed launchers, and the runner artifacts. Run the standard pending-migration check before admitting new runs. These additive migrations are safe to replay and do not infer authorship for historical runs.
- Let pre-rollout executions finish with their original runtime contract. New executions must have an active identity context and the managed launcher capability before provider startup.
- Check one ordinary run without a GitHub connection, then an authenticated GitHub operation. Inspect the run details for the responsible person and credential outcome. Verify a queued continuation on the same conversation.
- If rollback is needed, finish or explicitly stop executions using the new broker before removing its endpoint. Keep the additive schema and identity history. Do not drop identity columns or tables to roll back application code.
Remote acceptance uses the existing paid runner workflow with a narrow selection. Run it against the same immutable revision as the release; a successful local test does not qualify a different remote runner artifact.
Identity history survives deletion of the originating agent or run, so surviving subtasks and approvals retain their responsible person. The company foreign key and company-deletion service remove these company-scoped records when their company is deleted. Run-scoped adapters remove their managed launcher files at the terminal boundary. Native warm sessions retain their token-free launchers and inactive broker until session retirement; environment deletion and orderly controller shutdown close idle owners first. Cleanup failures are logged and do not change the run result.