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DottaandClaude Opus 5.5 a3f80ea043 fix(onboarding): close the onboarding task when its interview moves to chat (#19643)
## Thinking Path

> - Paperclip is the open source app people use to manage AI agents for
work
> - New users start in an onboarding task. The first agent can run the
onboarding interview there or in its chat.
> - #19512 moves the interview card to the chat when the agent asks it
there. The task's card expires.
> - The onboarding task then stays `in_review` with no card, run, wake
or reviewer. Review attention calls it "stalled".
> - Needs you then shows "Choose how this task continues" with Send back
to work / Request changes / Mark task done. A new user cannot know what
to pick. The card stays after the interview, plan approval and handoff
finish in chat.
> - This pull request closes the onboarding task when its interview
moves to chat, and links the chat in a system comment.
> - The benefit is that the user never decides what happens to an
internal task.

## Linked Issues or Issue Description

Refs #19512

**What happened?**
In a browser walk (Codex API path), the user chose "Interview me" in the
onboarding task. Then the user asked in Chat: "Can we do my onboarding
interview here in chat instead of in the task?". The chat card worked.
The onboarding task stayed `in_review`, and Needs you showed "Choose how
this task continues" for it until the end of onboarding.

**What did you expect?**
The onboarding task follows the conversation. It closes with a link to
the chat. No decision about an internal task goes to the user.

**Steps to reproduce**
1. Start onboarding. Choose "Interview me" on the onboarding task.
2. Open Chat with the agent. Ask to do the interview in chat.
3. Open Inbox. See "Choose how this task continues" for the onboarding
task.

## What Changed

- `server/src/services/issue-thread-interactions.ts`: after the chat
question supersedes the onboarding task's interview cards, the
onboarding task is closed (`in_review` → `done`) when no other card is
pending on it. A system comment links to the chat. The change writes an
`issue.updated` activity entry (`source: "onboarding_moved_to_chat"`).
Activity publications and issue post-commit actions run after commit.
- The task stays open if it is not `in_review` or if another card is
still pending (for example a card for a teammate).
- `first-task` skill: tells the agent that the task closes when
onboarding moves to chat. The chat then replaces the task for the rest
of the workflow (plan, proposal cards, child tasks, results). The agent
skips the steps that keep the task `in_review` or make it wait for a
child.
- `onboarding-assets/first-task/README.md`: documents the behavior.
- Tests in `server/src/__tests__/coordinator-handoff.test.ts`: the new
red/green case, plus a case that keeps the task open when another card
is pending.

## Verification

Red on master (fix reverted, same test):

```
 FAIL  src/__tests__/coordinator-handoff.test.ts > Coordinator canonical handoffs > resolves the onboarding task when its interview moves to the agent chat
AssertionError: expected [ 'stalled' ] to deeply equal []
- []
+ [
+   "stalled",
+ ]
 ❯ src/__tests__/coordinator-handoff.test.ts:257:40
    256|     // No "Choose how this task continues" stalled-review card for the…
    257|     expect(await stalledReviewCards()).toEqual([]);
      Tests  1 failed | 3 passed | 24 skipped (28)
```

The test reads the real Needs you feed (`attentionService.list`). On
master it holds a `review` item with `reviewAttentionState: "stalled"`
for the onboarding task. That is the "Choose how this task continues"
card.

Green with the fix:

```
cd server && npx vitest run src/__tests__/coordinator-handoff.test.ts
      Tests  28 passed (28)
```

Neighbour suites:

```
npx vitest run src/__tests__/onboarding-first-task-admission.test.ts src/__tests__/issue-onboarding-first-task-routes.test.ts \
  src/__tests__/issue-thread-interaction-routes.test.ts src/__tests__/issue-thread-interactions-service.test.ts \
  src/__tests__/issue-thread-interactions-telemetry.test.ts src/__tests__/coordinator-handoff.test.ts
 Test Files  6 passed (6)
      Tests  373 passed (373)
```

- `server` typecheck (`tsc --noEmit`): pass.
- `pnpm verify` exits 2 (the README is a broad input). Required CI
supplies broad coverage.
- Not run: a live browser walk. The Vitest case drives the same service
path the chat uses.

## Risks

- Low risk. The change runs only when an agent asks a question in its
own chat and that question supersedes a pending onboarding-task question
(the #19512 path).
- The onboarding task becomes `done` without a recorded first-task
decision. Later onboarding happens in chat, so nothing waits on this
task. A done onboarding parent still accepts child-completion report
wakes.
- The onboarding task rows are locked before their question rows, the
same order question creation on the task uses (Greptile review
follow-up). The chat row is locked first; no path locks an onboarding
task and then a chat row.

## Model Used

- Claude Opus 5.5 (`claude-opus-5-5`), Anthropic, via Claude Code with
tool use (shell, file edits, test runs).

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have searched GitHub for duplicate or related PRs and linked
them above
- [x] I have either (a) linked existing issues with `Fixes: #` / `Closes
#` / `Refs #` OR (b) described the issue in-PR following the relevant
issue template
- [x] I have not referenced internal/instance-local Paperclip issues or
links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip`
URLs)
- [x] My branch name describes the change (e.g. `docs/...`, `fix/...`)
and contains no internal Paperclip ticket id or instance-derived details
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [x] All Paperclip CI gates are green
- [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups
- [x] I will address all Greptile and reviewer comments before
requesting merge

🤖 Generated with [Claude Code](https://claude.com/claude-code)

---------

Co-authored-by: Claude Opus 5.5 <noreply@anthropic.com>
2026-11-06 17:27:39 -06:00
DottaandClaude Opus 5.5 0c904e2fd5 fix(tasks): treat a queued-message Interrupt as a hand-off, not a failed attempt (#19633)
## Thinking Path

> - Paperclip is the open source app people use to manage AI agents for
work
> - A user can send a message while an agent works. The message waits in
a queue strip above the composer. The strip has an **Interrupt** button
that stops the current turn so the message starts now.
> - In a browser walk of onboarding, Interrupt showed a red "Couldn't
finish this attempt. Your message is saved." banner with Retry. The
thread also showed two rows for the same stopped run ("Stopped for 22s"
and "Stopped after 21s"). After about 20 s it recovered by itself.
> - A stop that the user asked for is not a failure. The red banner and
Retry make a normal action look broken.
> - #19369 stopped resource waits from showing as failed attempts. This
is the same banner, reached through the Interrupt path.
> - This pull request shows the Interrupt hand-off as working, and
renders the stopped turn once.
> - The benefit is that steering a running agent looks calm and correct:
one stopped row, no error, and the queued message starts next.

## Linked Issues or Issue Description

Refs #19369 (same banner class, resource-wait path)

**What happened?**
While an agent ran, the user queued a message and clicked Interrupt on
the queued strip. A red banner "Couldn't finish this attempt. Your
message is saved." with Retry appeared at the top of the task. Two rows
showed the same stopped run: "Stopped for 22s" and "Stopped after 21s".
About 20 s later the banner went away and the message was delivered.

**Expected behavior**
A user Interrupt is not a failure. No red banner or Retry. One "Stopped"
row, and the queued message starts next.

**Steps to reproduce**
1. Start a task with a Paperclip Runner agent.
2. While it works, send a message so it waits in the queue strip.
3. Wait more than 10 s, then click Interrupt on the queued strip.
4. See the red banner, Retry, and two "Stopped" rows.

**Paperclip version or commit**
master e482f0f632

**Agent adapter(s) involved**
Not adapter-specific (core bug); seen with Claude API through Paperclip
Runner.

## What Changed

Cause 1 — banner
(`server/src/services/task-interruption-presentation.ts`):
- The Interrupt route cancels the run with
`queuedCommentInterruptQueueId` set to the queued wake, and stamps
`queuedCommentInterrupt.requestedAt` on that wake. The projection skips
its "intentional Stop" rule whenever a pending wake exists, and treats a
pending wake as "working" only for 10 s after the message was *queued*.
A message queued earlier than 10 s before Interrupt, or a cleanup that
takes longer than 10 s, fell through to `state: "failed", canRetry:
true`.
- The projection now reads `queuedCommentInterruptQueueId` from the run
and `queuedCommentInterrupt.requestedAt` from the wake (both bounded
strings in the existing batched queries). When the cancelled run was
stopped for exactly the pending wake, it returns `working` for up to 5
min after the click. Pause, approval, reconnect and other user actions
stay first. A pending Retry preparation and exhausted system recovery
keep their own presentation. After 5 min, a hand-off that never started
shows one Retry, as before.

Cause 2 — two rows (`ui/src/components/TaskChatThread.tsx`):
- When a native runner turn ends, the live tail stays until the settled
turn *and* its reply comment render, or a 15 s backstop expires. A
stopped turn posts no reply, so the tail stayed for 15 s next to the
settled turn. That gave "Stopped after 21s" (live tail) and "Stopped for
22s" (settled turn).
- A cancelled settling run now hands off as soon as its settled turn
renders.

Tests:
- `server/src/__tests__/task-interruption-query.test.ts`: new
embedded-Postgres test drives the real batched query with the exact
`resultJson` the Interrupt route writes. It checks `working`/no Retry/no
Sentry failure capture, a run stopped for a different queue still fails,
and the 5 min bound.
- `ui/src/components/TaskChatThread.test.tsx`: new test renders a live
native runner turn, then the cancelled run with no reply. It checks
there is no live tail and exactly one "Stopped" row.

## Verification

Red on master (tests added before the fix):

```
$ npx vitest run src/__tests__/task-interruption-query.test.ts -t "queued-message Interrupt"
 FAIL  task interruption latest run query > shows a queued-message Interrupt as handing off, not as a failed attempt
AssertionError: expected { …(8) } to match object { state: 'working', …(2) }
-   "canRetry": false,
+   "canRetry": true,
-   "state": "working",
+   "state": "failed",
 Tests  1 failed | 18 skipped (19)
```

```
$ npx vitest run src/components/TaskChatThread.test.tsx -t "interrupted native turn"
 ❯ src/components/TaskChatThread.test.tsx:5528:82
    expect(container.querySelector('[data-testid="task-chat-live-transcript"]')).toBeNull();
 Tests  1 failed | 368 skipped (369)
```

Green after the fix:

```
$ npx vitest run src/__tests__/task-interruption-query.test.ts src/services/task-interruption-presentation.test.ts
 Test Files  2 passed (2)
      Tests  60 passed (60)

$ npx vitest run src/components/TaskChatThread.test.tsx -t "interrupted native turn"
 Tests  1 passed | 368 skipped (369)
```

Local `pnpm verify` (affected Vitest selection) result is added in a
follow-up comment; required CI supplies typecheck, build and the full
suite.

## Risks

- Low risk. Both changes are presentation only. Admission, cleanup and
Stop gates do not change.
- A hand-off that is blocked for a long time now shows no banner for up
to 5 min. The queued strip still shows its own wait text ("Waiting for
the previous run to finish recovery…") during that time, so the wait is
visible. After 5 min, Retry returns.
- The thread change applies only to a settling run with status
`cancelled`. Failed and succeeded runs keep the existing reply-comment
hand-off.
- Not in scope: the task status icon changed to `todo` during the
hand-off. That is the issue status, not this projection.

## Model Used

- Claude Opus 5.5 (`claude-opus-5-5`), Anthropic, via Claude Code with
tool use (shell, file edit, test execution).

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have searched GitHub for duplicate or related PRs and linked
them above
- [x] I have either (a) linked existing issues with `Fixes: #` / `Closes
#` / `Refs #` OR (b) described the issue in-PR following the relevant
issue template
- [x] I have not referenced internal/instance-local Paperclip issues or
links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip`
URLs)
- [x] My branch name describes the change (e.g. `docs/...`, `fix/...`)
and contains no internal Paperclip ticket id or instance-derived details
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [ ] All Paperclip CI gates are green
- [ ] Greptile is 5/5 with no open P2s, recommendations, or follow-ups
- [x] I will address all Greptile and reviewer comments before
requesting merge

🤖 Generated with [Claude Code](https://claude.com/claude-code)

---------

Co-authored-by: Claude Opus 5.5 <noreply@anthropic.com>
2026-11-06 17:18:04 -06:00
DottaandPaperclip c9391720a1 fix(heartbeat): send saved follow-ups after task completion (#19600)
## Thinking Path

> - Paperclip manages agents and their work.
> - Task messages remain in a durable queue while an earlier run saves
its result.
> - That result can mark the task done before the user sends the saved
messages.
> - Send records current user intent, but its wake guard allowed only
active task states.
> - The old queue therefore remained pending with an obsolete
finalization message.
> - This change admits that exact Send receipt and reopens the task
through the issue service in the successor transaction.
> - The agent can receive the saved input once while the completed
result remains unchanged.

## Linked Issues or Issue Description

**What happened?**

Send on a saved message can leave the message queued after its native
predecessor succeeds and commits. The old wait message remains visible.
Allowing admission alone also fails: continuation construction rejects a
task that remains done.

**Expected behavior**

Explicit Send must deliver the saved input once through normal
admission. It must retain the previous run and its result.

**Steps to reproduce**

1. Save a follow-up while a native run finishes its result.
2. Let that run succeed, commit its accepted result, and mark the task
done.
3. Send the saved follow-up. Before this change, the receipt stays
deferred.

Related public work: Refs #19542. That change selects recovered
workspace files. This change handles the later saved-message admission.
Refs #19602 for the independent workflow fixture repair required by CI.

## What Changed

- Allow the exact explicit Send wake guard to accept a done task. Keep
automatic recovery and cancelled task guards unchanged.
- Reopen the task through the company-scoped issue service after
admission gates pass. Commit reopening, queue consumption and the
successor together. Publish the audit after commit.
- Add a native succeeded/committed predecessor regression with unchanged
saved work and one successor after two resume calls.
- Verify real heartbeat startup under the clicking operator. Keep
automatic input, cancelled tasks and paused agents held.
- Check workspace preflight for the prospective reopened task. Use the
normal company-scoped transition if preflight blocks a done task, so its
completion metadata is cleared.
- Check a successful native predecessor for its committed accepted
result, current ownership and pending cleanup. Keep approvals and
questions effective even without a recovery action.
- Document the saved Send contract and update the queue test dependency.

## Verification

- Final merge qualification for
`675914f0fa9b5eb1d2c9c8fcd448e0669d0c4836`: all 56 applicable status
checks pass, with no pending or failed checks. [Final
CI](https://github.com/paperclipai/paperclip/actions/runs/42307623559)
includes typecheck, build, all applicable test and E2E shards, and
aggregate verification. Current-head Greptile is 5/5; all five review
threads are resolved. Any paused or queued application review is not
claimed as a new completed review.

- Final base qualification at
`675914f0fa9b5eb1d2c9c8fcd448e0669d0c4836`: official preflight passes
(1.5s); all six integrated model-normalization cases pass (19.07s); both
affected test typecheck layers pass. The integration changes no
production server/shared/Runner/adapter inputs, so the preceding 12-case
Send proof, two ordinary status guards, and unchanged production
typecheck layers remain applicable. Fresh final-head CI supplies broad
coverage.

- New review regression: both failed and cancelled native predecessors
on a task manually marked Done fail before the repair with
`continuation_task_ownership_changed` through real
`resumeQueuedCommentInterrupt` admission. At
`bfb0eff7941090ac3ac43ce4366ba2e3d46612e9`, all 12 affected
Send/source/cleanup/workspace/decision cases pass (246.80s), ordinary
Done/cancelled rejection cases pass (2; 100.31s), and all seven server
typecheck layers pass. History validation uses the prospective reopened
status only for an already-verified explicit native Send. No status is
changed during a dry run.
- Prior `e64e4bb1` CI passed the affected serialized server suites,
including the complete saved-message route suite, typecheck and build.
General server shard 4 still failed two unrelated stale default-model
expectations (`gpt-5.6-sol` versus the new `gpt-6.1-sol` default). The
equivalent repair has already merged in #19610 as
`8621bcf53ee2e4bbefb7d193add42dd544ca06e8`; the separately prepared
#19645 is closed as superseded. This source fix does not weaken or edit
those assertions.

- Original RED: the committed-source and completed-task startup cases
left the saved receipt deferred.
- Review RED: Done plus an unrunnable isolated worktree created one
successor instead of zero. A successful committed predecessor with
pending lease cleanup also created one instead of zero. The new
Done-to-blocked path retained stale completion time. Pending approvals
and questions each allowed a successor. All failures were captured
before their respective repairs.
- Integrated production revision
`99018264dd1ef002ff3500378184bcd167d9206b`: 417 affected cases pass
across the complete native continuation, responsible-user startup, and
workspace preflight suites (386 + 18 + 13). These include the original
successful startup case and six cleanup/finalization faults that hold
the exact saved receipt until settlement, then deliver it once.
- `pnpm --filter @paperclipai/server typecheck` passes all seven layers
on that integrated head, including the local Runner/SDK dependency
build. Module-boundary, whitespace, and added-code-comment checks pass.
- Normal master integrations preserve branch history. No force push or
assertion weakening was used. Fresh CI and automated review are running
on `675914f0fa9b5eb1d2c9c8fcd448e0669d0c4836`, which normally integrates
the already-merged #19610 fixture repair after the reproduced inherited
CI failure.
- The earlier CI attempt failed in five unchanged workflow fixture cases
because IMAGE_ONLY was unset. The merged #19602 repairs that fixture. A
later inherited duplicate default in that independent fixture has a
separate repair; this PR does not edit it.
- Follow-up route-fixture RED: three existing native queue delivery
cases failed because their fixture marked a run successful without an
accepted result or committed finalization. The same three cases pass
after the fixture records the complete native success contract (42.08s);
delivery assertions and production gates are unchanged. The affected
test-tree TypeScript layer also passes. The full route run passed all
119 assertions but failed its 30-second database teardown hook, so it is
not recorded as a suite pass. That result is retained. One unchanged
bounded rerun was stopped after more than 15 minutes without a final
verdict; it is inconclusive, not a pass.
- Final integrated head `e64e4bb1`: all 13 focused route and
completed-task admission cases pass across two real-PostgreSQL suites
(188.95s), including the three repaired route fixtures and every new
cleanup/finalization/decision hold. Fresh preflight passes; all seven
server typecheck layers pass. Required final CI supplies the broader
route and server coverage.
- These tests use real PostgreSQL and normal admission, cleanup, queue
consumption, and startup services. The startup suite controls the
provider boundary. Hosted provider acceptance remains pending normal
deployment.

## Risks

- Explicit Send can reopen a done task. This is limited to its validated
saved receipt and current assignee. A cancelled task remains held.
- Reopening uses the existing company-scoped issue transition and shares
the successor transaction. A failed admission does not reopen the task.
Provider Stop, workspace, approval, pause and budget checks retain their
existing owners.
- Cleanup and pending decisions retain the done task and saved receipt.
An unrunnable workspace uses the existing blocked-task diagnostic. No
schema or runtime package changes.

## Model Used

- OpenAI Codex, GPT-6 family; exact serving snapshot/context window not
exposed; repository analysis, code editing, tool execution.

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have searched GitHub for duplicate or related PRs and linked
them above
- [x] I have either (a) linked existing issues with `Fixes: #` / `Closes
#` / `Refs #` OR (b) described the issue in-PR following the relevant
issue template
- [x] I have not referenced internal/instance-local Paperclip issues or
links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip`
URLs)
- [x] My branch name describes the change (e.g. `docs/...`, `fix/...`)
and contains no internal Paperclip ticket id or instance-derived details
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [x] All Paperclip CI gates are green
- [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups
- [x] I will address all Greptile and reviewer comments before
requesting merge

---------

Co-authored-by: Paperclip <noreply@paperclip.ing>
2026-11-06 17:15:07 -06:00
DottaandPaperclip 2e340d6235 fix(ui): show unread message counts in agent chat pickers (#19627)
## Thinking Path

> - Paperclip helps people manage AI agents and their work.
> - People switch between agent chats to read replies.
> - The agent picker does not show how many messages are unread.
> - People need that count before they select a chat.
> - The chat list already has the viewer's read state.
> - This pull request adds numeric badges from that shared list.
> - People can find unread replies without extra requests for each
agent.

## Linked Issues or Issue Description

**What existing behavior does this improve?**

The chat header agent picker and the secondary sidebar's Add chat
picker.

**Subsystem affected**

Agent Chat UI, shared task types, and the chat read-state service.

**Current behavior**

The pickers do not show the unread message count for each agent.

**Proposed behavior**

Show the unread count beside each agent. For example, show 3 for three
unread agent messages. Hide the badge when the count is zero. Keep
switching available while chat data loads.

**Reason and benefit**

People can see which chats need attention before they switch. The count
uses the existing shared request and cache.

**Breaking changes**

The chat response gains an optional `unreadMessageCount` field. Existing
fields and read receipts keep their behavior. There is no database
migration.

**Additional context**

Related: #19425 changes chat structure. This change adds counts to the
current agent pickers. The duplicate search found no PR for these count
badges.

## What Changed

- Count unread agent comments in the existing grouped read-state query.
Keep company and viewer scope.
- Exclude human messages, deleted comments, system notices, and
fast-response receipts.
- Pass memoized count maps to both agent pickers. Use a direct lookup
for each row.
- Show numeric badges and accessible singular or plural labels.
- Test count changes, account isolation, cached opens, search, and large
agent lists.
- Update the chat stories, fixture data, and development guide.
- Make the Slack owner retry-deadline test deterministic after
reproducing its CI failure.

## Verification

- On current head `05f5fa6201`, the [main CI
workflow](https://github.com/paperclipai/paperclip/actions/runs/42305845930)
passed, including build, typecheck, all applicable test shards, browser
shards, and final verification. The prior server shard 2, 6, and 7
failures do not recur.
- [Greptile's current-head
review](https://github.com/paperclipai/paperclip/pull/19627#issuecomment-6696161631)
is 5/5, its check succeeded, and both previous review threads are
resolved. Current head check inventory is complete: 55 successful
checks, three intentional skips, and no pending or failed checks. The
Paperclip application review summary reports paused; no new completed
Paperclip review is claimed. Its existing findings are resolved, and the
independent current-head Greptile review is 5/5.

- Current head `05f5fa6201` merges master `8621bcf53e` to resolve an
import conflict. Master now includes the same model-default test repair.
This branch keeps its upstream import, so that file no longer differs
from master.
- After this merge: all 21 server tests in the Slack owner and
model-default suites pass, all 22 tests in the three picker/sidebar
suites pass, and token gates pass. The standard preflight still cannot
build Rust because `cargo` is absent. Fresh CI must supply the broad
checks.

- Head `7d125fb8c7` replaces the Slack owner test's real timer wait with
the worker's existing clock input. It checks that the intent stays
pending one millisecond before the retry deadline and clears at the
deadline. All 15 Slack owner integration tests pass locally. Runtime
retry behavior is unchanged.
- On `4cfb1e9d55`, both review checks gave 5/5. CI [server shard
2](https://github.com/paperclipai/paperclip/actions/runs/42302458830/job/128183671349)
failed the Slack credential-lease retry test. The same assertion failed
in an unchanged local run. A diagnostic run with added logging passed;
the exact timer deviation was not captured. The new test removes the
real-time wait assumption and checks the clock boundary directly. The
earlier model-default and cleanup failures did not recur in that CI run.

- On `a3378dfc40`, both Greptile and Paperclip Review gave 5/5 with no
open findings. Typecheck, build, all eight browser shards, and most test
shards passed.
- That CI attempt failed two server shards. The model-default test still
expected `gpt-5.6-sol`, while the current default is `gpt-6.1-sol`. I
reproduced both failures locally. Commit `4cfb1e9d55` uses the exported
default-model constant; all six tests in that suite now pass. Production
model selection does not change.
- The retained-cleanup backlog test exceeded its 15-second limit in
[server shard
6](https://github.com/paperclipai/paperclip/actions/runs/42299858777/job/128175193320).
The unchanged test passes locally with the same limit. Its CI timeout
cause is not established. No assertion or timeout was changed. The fresh
CI run must recheck it.

- Review repair: commit `0db631b215` keeps the existing-chat and
unread-agent arrays stable when chat data and the active agent do not
change. A new 500-agent test fails before the repair and passes after
it. The test also checks count refreshes.
- The first CI typecheck failed on duplicate `IMAGE_ONLY` and
`TESTOPS_REQUESTED` keys in `tests/runner-e2e/workflow-target.test.ts`.
This was present in upstream code. Master commit `e482f0f632` removes
the duplicate keys. This branch now includes that commit. All nine
workflow-target tests pass locally.
- After the latest master merge: all 22 tests in the three affected
picker/sidebar suites pass. Before that merge, all 38 focused UI tests
passed.
- The current head is `05f5fa620134ad199a3d85b66fb2eb93d3bb6077`. All
current status checks are complete, the aggregate verify gate succeeds,
mergeability is CLEAN, and no unresolved review threads remain. The
maintainer has instructed normal merge after checks pass.

- After merging current master: 37 focused UI tests pass across
AgentChatPicker, CoordinatorAgentSwitcher, AgentConversationsSidebar,
useAgentChatRead, and SidebarAgentChats.
- After merging current master: all 38 proactive-chat integration tests
pass with a real disposable PostgreSQL database. They check counts of 2,
1, and 0 at exact read cutoffs.
- The prior revision passed UI typecheck and build, shared build,
isolated low-memory server typecheck, token gates, and 30 map/catalog
tests.
- The 500-agent test bounds index work and count lookups. Search does
not rebuild the existing-chat index.
- Browser checks used production components with simulated API data.
Dark, light, mobile, and Add chat cases passed. Counts of 3 and 12
stayed visible through search. Read agents had no badge. Cached opens
made no chat API requests.
- Twenty local cached opens took 34.5–57.6 ms, with a 38.4 ms median.
This is an unthrottled fixture measurement.
- Earlier full local checks could not complete because Rust cargo is
absent and the workspace has limited memory. The standard worktree
preflight also stops at missing cargo. Required CI must supply broad
checks for this PR head.
- The first server typecheck ran out of memory while Storybook was
active. Its isolated low-memory retry passed. No visual baseline
comparison or live provider delivery is claimed.

## Risks

- Low risk. The count replaces a boolean aggregate in the same grouped
query. Very long chat histories still need that existing scan.
- A count can be stale until the existing chat-list cache refreshes.
Read receipts still control the unread cutoff.
- The change adds no polling, per-agent history request, database
migration, or permission change.

## Model Used

OpenAI GPT-6 through Codex, with code editing, terminal tools, and
browser verification. The runtime did not expose a more specific served
model ID or context-window size.

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have searched GitHub for duplicate or related PRs and linked
them above
- [x] I have either (a) linked existing issues with `Fixes: #` / `Closes
#` / `Refs #` OR (b) described the issue in-PR following the relevant
issue template
- [x] I have not referenced internal/instance-local Paperclip issues or
links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip`
URLs)
- [x] My branch name describes the change (e.g. `docs/...`, `fix/...`)
and contains no internal Paperclip ticket id or instance-derived details
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [x] All Paperclip CI gates are green
- [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups
- [x] I will address all Greptile and reviewer comments before
requesting merge

---------

Co-authored-by: Paperclip <noreply@paperclip.ing>
2026-11-06 17:10:56 -06:00
Nicky LeachandClaude Opus 5.5 913102870d fix(environments): fill the managed instance default once, under a lock (#19632)
## Thinking Path

> - Paperclip is the open source app people use to manage AI agents for
work
> - On a managed instance under `enableManagedSandboxOnly`, boot points
the instance default at the managed sandbox when nothing deliberate is
set
> - That write read the default and wrote it later without a lock. Two
overlapping boots, or a boot and an admin write, could overwrite a value
the other had just committed
> - A revert path also reset that stamped default whenever the mode was
turned off, so a platform-filled default could change again later
> - A planned plugin-environment default should fill only an unset
default and never change a set one, which needs every instance's default
to stay set
> - This pull request makes the fill one locked transaction and removes
the revert, so a filled default is an ordinary set value
> - The benefit is a single, race-free rule: boot fills an unset default
once, and nothing changes a set default afterwards

## Linked Issues or Issue Description

Refs #19551 (the plugin-environment default that builds on this rule)

**Subsystem affected**
Server environments: the managed environment bootstrap and the instance
settings route.

**Problem or motivation**
`applyManagedEnvironments` read the instance default, decided, and wrote
it in separate steps with no lock, so a concurrent boot or admin write
could be overwritten. When `enableManagedSandboxOnly` was not declared,
a revert reset a default the platform had filled. That needed a
`managedDefaultStamped` marker, plus a marker clear on every admin
default write. A later boot could therefore change a default that had
already been set.

**Proposed solution**
Fill the default in one transaction that locks the instance default row
and rechecks it. Fill only an unset, local or deleted default. Remove
the revert and its marker, so a filled default behaves like any other
set value.

**Alternatives considered**
Keeping the revert and adding locks to it. A revert on a mode change
would still move an existing instance's default later, which a fill-only
plugin default cannot tolerate.

**Roadmap alignment**
This narrows existing managed-environment behaviour. It adds no product
surface.

## What Changed

- New `server/src/services/managed-instance-default.ts`:
`fillUnsetInstanceDefault(db, environmentId)`. In one transaction it
creates the settings row if needed, locks the instance default row (`FOR
UPDATE`), and rechecks the current value. It writes only when the
default is unset, names the local environment, or names a deleted
environment. Any other set default is kept.
- `server/src/services/managed-environments.ts`:
- Under `enableManagedSandboxOnly`, the managed sandbox fill now uses
that helper, through a new `fillInstanceDefault` test seam.
- The mode-off revert and the `managedDefaultStamped` marker are
removed.
- The unused `instanceSettings` seam option is removed, along with the
`getById`, `update` and `findManagedSandboxEnvironment` methods of the
environments seam.
- `server/src/routes/instance-settings.ts`: an explicit default write is
a plain `update` again. The marker clear and its transaction are gone.
- `doc/DEVELOPING.md`: the "Managed environments" section states the
fill rule.

Existing rows may still carry `managedDefaultStamped` in their metadata.
Nothing reads it any more, and it is not part of the managed stock hash.

## Verification

- `cd server && npx vitest run
src/__tests__/managed-instance-default.test.ts` (embedded Postgres):
- The fill writes an unset default, including on a fresh instance with
no settings row. It also writes a default that names the local
environment, or one whose environment was deleted.
- It never changes a default set to an ssh, plugin or other sandbox
environment, and leaves a default that already names the target alone.
- Controlled overlap: an uncommitted admin default write makes the fill
wait, and the fill then keeps the admin's value. This test fails without
the row lock.
  - Two overlapping fills: exactly one writes.
- Real boot pass: the default is filled under managed-sandbox-only and
stays the same after a boot with the mode off. A set default stays on
every boot.
- `npx vitest run src/services/managed-environments.test.ts
src/services/managed-environments-plugin-entries.test.ts`: the fill runs
only under managed-sandbox-only, with the managed sandbox row. It never
runs for a plugin environment. Nothing is written when the mode is off.
A failed fill does not fail the ensure.
- `npx vitest run src/__tests__/instance-settings-routes.test.ts`: an
explicit default write is a plain update that touches no environment
row.
- `npx vitest run src/__tests__/managed-plugin-environments.test.ts
src/__tests__/environment-routes.test.ts
src/__tests__/server-startup-feedback-export.test.ts
src/__tests__/instance-settings-service.test.ts`: pass.
- `pnpm --filter @paperclipai/server typecheck` passes.
- I did not run the full `pnpm test:run`, `pnpm -r typecheck` or `pnpm
build`. CI covers them.

## Risks

- Behaviour change: when `enableManagedSandboxOnly` is turned off for an
instance, a default the platform filled with the managed sandbox now
stays. Local execution is still allowed then, but it is no longer the
default unless an admin picks it.
- No schema change. Stale `managedDefaultStamped` keys stay in some row
metadata and are ignored.
- The fill holds the instance default row lock for one short transaction
at boot.

> For core feature work, check [`ROADMAP.md`](ROADMAP.md) first and
discuss it in `#dev` before opening the PR. Feature PRs that overlap
with planned core work may need to be redirected — check the roadmap
first. See `CONTRIBUTING.md`.

## Model Used

- Claude Opus 5.5 (`claude-opus-5-5`), Anthropic, through Claude Code
with tool use (file edits, shell, test runs).

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have searched GitHub for duplicate or related PRs and linked
them above
- [x] I have either (a) linked existing issues with `Fixes: #` / `Closes
#` / `Refs #` OR (b) described the issue in-PR following the relevant
issue template
- [x] I have not referenced internal/instance-local Paperclip issues or
links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip`
URLs)
- [x] My branch name describes the change (e.g. `docs/...`, `fix/...`)
and contains no internal Paperclip ticket id or instance-derived details
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [x] All Paperclip CI gates are green
- [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups
- [x] I will address all Greptile and reviewer comments before
requesting merge

🤖 Generated with [Claude Code](https://claude.com/claude-code)

Co-authored-by: Claude Opus 5.5 <noreply@anthropic.com>
2026-11-06 15:01:58 -08:00
Devin FoleyandPaperclip 8621bcf53e Cancel subscription sign-in requests when leaving agent setup (#19610)
Back during pending subscription sign-in could accept a late response and
reopen agent setup. Abort pending reads, release abandoned sessions, and
ignore stale responses. Wait for cleanup before starting a replacement,
and preserve sessions belonging to another account or environment.

Cover deferred resume/start/prompt responses for both providers, local
login cancellation, quick reselection, and browser request abort. Stabilize
Runner fixtures and normalization assertions exposed by integration CI.

Verified: 483 focused UI tests, six onboarding browser cases, UI typecheck
and token gates, Runner fixture checks, and the complete CI run on
221f2e3eb7. Greptile scored 5/5;
all review threads are resolved. Earlier failures and recovery evidence
remain in the PR description.

Co-Authored-By: Paperclip <noreply@paperclip.ing>
2026-11-06 14:31:11 -08:00
DottaandPaperclip 44c60c7221 Verify default skill sync through two real cold sleep cycles (#19191)
## Thinking Path

> - Paperclip is the open source app people use to manage AI agents for
work.
> - Automatic skill sources check upstream every five minutes.
> - The domain deadline contract can hand future work to a durable wake
alarm.
> - A saved deadline or a worker unit test does not prove that a stopped
tenant resumes the real producer.
> - This pull request checks the default cadence through the actual app
and a matching service checkout.
> - It checks two cold starts and three distinct persisted skill
revisions with real clocks.
> - The benefit is repeatable local evidence without changing production
timing or authority.

## Linked Issues or Issue Description

Refs: #19001, #17008, #17923.

This is a test and documentation follow-up to #19001. #19001 is now
merged; this PR targets master. Feature code remains in that merged
foundation. #17008 covers the earlier source worker change. #17923
covers separate skill-cache retention; this PR does not change that
behavior.

A scoped search of public PRs and issues found no duplicate
default-cadence cold-cycle acceptance test. No matching public issue was
found. The enhancement fields follow.

**Pre-submission checklist**

This improves checks for an existing feature. It adds no product
endpoint or execution authority. The public related-work search is
complete.

**What existing behavior does this improve?**

Verification of automatic skill-source updates across a durable idle
handoff and cold restart.

**Subsystem affected**

`server/` test fixtures and development documentation.

**Current behavior**

Domain tests cover claims, access and future deadlines. They do not
prove the full default-300-second path from ordinary source attachment
through signed tenant reports, durable alarms, stopped compute and a
changed persisted skill.

**Proposed behavior**

An opt-in launcher checks bootstrap first, then two full real-clock
cycles. Ordinary CI can run the transport controls without the host
fixture. The launcher-specific worker assertion runs only when prewire
is requested, and fails closed in that lane.

**Reason and benefit**

The test can detect an early refresh, a lost deadline, a stale proof, an
ACK after physical stop, a failed cold restart or a producer that does
not publish changed contents.

**Breaking changes**

None to product APIs, schema, cadence, authorization, claims or retry
policy. Existing maintenance-helper defaults stay unchanged.

**Additional context**

The opt-in host flow needs an authorized matching service checkout, its
normal compiled acceptance bridge, Node 22 and two owned PostgreSQL test
databases. The standalone controls do not need that service or
PostgreSQL. Roadmap review places this under existing Skills Manager and
Cloud deployment verification, not a new core feature.

## What Changed

- Add an opt-in default-cadence acceptance test and checked-in launcher.
- Reuse real server startup, managed tenant authority and the ordinary
project attachment route. Control only the remote Git snapshot boundary;
keep actual authorization, scanning, claims and publication.
- Use actual signed tenant routes and the matching service's gate, sleep
controller and PostgreSQL wake-alarm store. Stop and restart real app
children through a controlled local provider.
- Preload the Node transport guard before coordinator, worker and child
module work. Check worker-local and child PID, thread and source-hash
receipts. Keep caught unexpected transport attempts fatal.
- Require both persisted refresh times and actual upstream handler
timestamps to be at or after each original deadline.
- Join physical callbacks during bridge close, stop a late wake-created
child, and preserve the original cleanup budget. Add a real
IPC/HTTP-child counterfactual.
- Accept valid owned HTTP options paths without allowing Unix sockets or
unknown origins. Remove the unused App helper export.
- Add finite transport and launcher controls. Defer only the
launcher-specific parent assertion in vanilla CI. Keep all subprocess
controls default-runnable.
- Add optional child entry, preload and bounded pool settings to the
existing test helper. Preserve its defaults and the real observer test
body.
- Remove added explanatory comments under the contribution policy.
Preserve executable syntax, directives and literals.
- Document pinned setup, fresh owned databases, bootstrap and full
two-cycle commands in `doc/DEVELOPING.md`.

The diff against the intended base contains nine test/helper/launcher
files and this one document. It adds no production feature code or Cloud
source to the App repository.

## Verification

The latest two-file CI repair preserves both original failed jobs. A
newer master workflow introduced two required step inputs absent from
its extracted-step test environment; the faithful false/false inputs now
pass all five existing target-authorization cases, after an actual
missing-input counterfactual failed. A controlled socket case also
reproduces legal reuse of the released runner port; the fixture now
holds that reservation until the preview binds, releases it in finally,
and asserts distinct ports. All original retry/result/accounting
assertions and timeouts stay unchanged. The original Linux listener
owner remains unknown; the control proves this fixture collision
mechanism, not that original attribution. Fresh current-head full CI and
complete reviews are pending.


Current merge-integration candidate:
`f6f686103b7bfd0a4ab83085634c622af3896ecb`, a normal merge after #19001
landed, including actual master
`1c9767d323cf872a266962b9e6b4bd5cbcb57f1c`. All nine acceptance code
files are byte-identical to148a82e5; both parents' documentation
additions survive. Every other path equals actual master. The only
conflict was the old foundation's startup block; current master was
retained in full. Fresh exact-head CI and complete reviews are pending.
The local measurements below belong to their explicitly named revisions;
no fresh full614-second run is claimed.

Current candidate: `148a82e54c502759785407357001c6b50c1439dd`, normally
carrying the current base `8c912e1ba4fc66397a7341ade59373af8075068f`.
All nine acceptance code blobs remain identical to qualified repair
`e092746f4da181c8414c63be71474619a84b97e7`; documentation retains both
parents. The matching built service for the fresh bootstrap is
`389878364b42dd129835d263f91882c5774d5123`, using Node 22.23.4. The App
uses Node 24.22.2 and pnpm 9.15.4.

Use the exact controlled setup and commands in
[doc/DEVELOPING.md](doc/DEVELOPING.md#controlled-default-cadence-sleep-acceptance).
Fresh owned databases and the matching compiled service are
prerequisites; the launcher does not create a cluster or build
dependencies.

- **Current affected semantic check passed**, using actual native
TypeScript 7 and the current generated CI options/references (0.640
seconds). Normal declaration references passed in 11.726 seconds, with
source-matched SDK/shared/kernel/Runner prerequisites and the frozen
current lockfile.
- **Current guarded controls: 44 passed**, plus the same single explicit
real-PG observer deferral, in 4.790 seconds. The executing worker
checked its own global PID/thread/preload source hash and matching
receipt. Guard hash:
`7daf9ae7d2f26e8fcd389b1d560fac1d4e218a8304a2c58e49f646af108165bc`. No
unexpected attempts or PG sockets occurred. Vanilla controls on the
identical repair files passed 22 cases with one explicit launcher-parent
assertion deferral (2.044 seconds).
- **Real cleanup counterfactual:** unchanged old helper failed the
actual endpoint assertion in 1.568 seconds: its late HTTP child remained
reachable after close returned. The same fixed-helper case passed in
1.485 seconds: close waited, the child exited, the port was unreachable
and no IPC error occurred. The isolated driver records only the known
legacy closed-IPC error long enough to inspect cleanup; current helper
requires zero such errors. All recorded processes and ports were
independently checked empty.
- **Fresh current bootstrap passed once**, 16.159 seconds wall / 14.12
seconds Vitest / 12.237 seconds body. The ordinary enabled producer
persisted useful revision 1, cleared its lease and retained exactly
300,000 ms between success and original next deadline. A signed
current-generation report produced the matching
generation/operation-lock SQL ACK before physical child stop (ACK
06:54:02.020 UTC; stop signal 06:54:02.025 UTC). The alarm retained the
original D and D-120 eligibility. Both fixture databases ended with zero
sessions; the coordinator independently audited and normally removed
them. This bootstrap does not execute a due wake or the new v2/v3 timing
assertions.
- **Historical full two-cycle result remains 1/1 passed in 614.213
seconds wall**, at measured App
`74f7c012ca17ad0d7302d76403f5033affb1430b` and service
`2cb54f904031dcf69a32902cd853b43f74d6f301`. Two new processes published
distinct immutable v2/v3 at original D+115 ms and D+98 ms. Exact signed
SQL ACKs preceded both physical stops; real SQL D-120 claims caused both
cold starts. Features, claims and original business deadlines stayed
unchanged.
- Both historical 10.002-second quiet windows kept app SQL, upstream and
outgoing HTTP counts unchanged. Two awake PG sockets remained. Quiet
counts do not mean all connections closed.
- The stronger timing checks are additional assertions, not
retroactively executed results. Offline inspection of the original
receipts confirms persisted successes at D+115/+98 ms and earliest
upstream handler entries at D+44/+30 ms; all five requests in each
refresh group started after D. The exact new pre-sleep request counter
and dispatch-before-handler time were not independently recorded
historically.
- Source review found 19 critical automatic Git producer/runtime files
identical to the measured App. The current active cache helper change
does not run on automatic Git publication and adds no pool. The matching
service carries unchanged measured helper/sleep/controller/alarm seams
through its normal master merge. The current bootstrap and focused
controls qualify the changed cleanup/guard and parent integration. No
fresh current-head 614-second pass or whole-tree identity is claimed.
- Runtime is serialized: worker 1, per-pool limits at most 4, configured
App potential 10 + shared service pool 2 + one observer against server
max 40. Current bootstrap point samples observed at most 3 owned clients
plus the observer; those samples are not a continuous aggregate peak.
App/service guard peaks were 2 each, with zero remaining sockets at
cleanup.

Failures remain accounted for. The first historical bootstrap cleanup
masked an unknown primary error. Later attempts exposed missing
fixture-owned domain metadata and lost origin snapshots; test-only
ownership/cleanup corrections preserved the original assertions and
timeouts. The new causal driver first lacked a final observation, then
encountered sandbox bind EPERM, then exposed the old closed-IPC error;
only the final real endpoint failure above is labeled the cleanup
counterfactual. An offline dependency miss and a generator-cleared
ignored compiler config were retained and corrected without weakening
compiler options. The former inherited policy failure (397 findings) is
resolved by the genuine current-master base/scanner, with zero findings
and seven scanner tests; no unrelated UI site was edited and the gate
was not relaxed.

Historical real TCP observer coverage passed 1/1 in 3.688 seconds.
Comment-only and opt-in-selection carries remain documented in prior
evidence; self-hash changes are metadata exceptions with fresh
executing-worker checks.

The full workspace typecheck, test, build and browser commands were not
run locally for this test-only slice. The current base passes its full
exact-head CI and Greptile 5/5; this leaf now has all 56 exact-head
check runs terminal (54 success, one neutral, one skip), the additional
legacy security status passing, complete current Greptile 5/5 and
Ponytail 5/5 reviews, and all four review threads resolved across all
pages. No live provider or deployed host/database suspension was
exercised.
## Risks

- The host test requires a matching service checkout and compiled
bridge. An unrelated service revision is not a valid substitute.
- Controlled localhost Git, S3 and physical process operations do not
qualify deployed Railway or Neon suspension, external permissions or
provider uncertainty.
- The Node guard does not prove native subprocess transport isolation.
Only finite local Git metadata and Node version commands were needed.
- Two short SQL/HTTP quiet windows do not establish strict 90-second
host acceptance. Separate plugin-host LISTEN, MCP wake and other domain
gaps remain open.
- Explicit test URLs are destructive fixture inputs. Use fresh, owned
`_test` databases. The launcher does not start a cluster or choose a
database implicitly.
- Passing CI and review do not qualify deployed suspension; the current
proof boundaries above still apply.

> For core feature work, check `ROADMAP.md` first and discuss it in
`#dev` before opening the PR. This PR adds verification to the existing
feature in its base.

## Model Used

OpenAI `gpt-6.1-sol` assisted with implementation, repository review and
local code execution. OpenAI Codex, based on GPT-6, performed managing
review and integration. The context-window sizes and exact served
backend snapshots were not exposed.

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have searched GitHub for duplicate or related PRs and linked
them above
- [x] I have either (a) linked existing issues with `Fixes: #` / `Closes
#` / `Refs #` OR (b) described the issue in-PR following the relevant
issue template
- [x] I have not referenced internal/instance-local Paperclip issues or
links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip`
URLs)
- [x] My branch name describes the change and contains no internal
Paperclip ticket id
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [ ] All Paperclip CI gates are green — fresh merge-head gates pending
- [ ] Greptile is 5/5 with no open P2s, recommendations, or follow-ups —
fresh merge-head review pending
- [x] I will address all Greptile and reviewer comments before
requesting merge


### Current master reconciliation (2026-11-06)

Merged actual master `e28158b353fd274f0322be76d62cd223e0df599f`
normally. All nine qualified acceptance code files and the held-port
repair remain byte-identical. Upstream independently landed the workflow
input fix in #19602; the fixture now uses that exact upstream version
once, avoiding duplicate object keys in a squash merge. All other master
changes are preserved. The earlier two-cycle local evidence remains
source-specific; no fresh 614-second run or deployed suspension is
claimed. This new head requires fresh CI and bot reviews.

### Actual combined-tree typecheck failure and repair

CI job `128156887548` failed with TS1117 at workflow-target.test.ts:22:
two independently landed master fixes declared the same `IMAGE_ONLY` and
`TESTOPS_REQUESTED` keys. The complete original log is retained. A
further normal master merge now removes the duplicate declarations,
retaining exactly one false/false pair and every original assertion. All
nine qualified acceptance code paths and the held-port repair remain
byte-identical; unrelated master changes are preserved. This is a
concrete compiler failure and source repair, with fresh exact-head
CI/reviews required.

---------

Co-authored-by: Paperclip <noreply@paperclip.ing>
2026-11-06 15:55:05 -06:00
e482f0f632 fix(server): shed only retryable object-journal reads under load (#19176)
Client polling can exhaust the shared object journal queue and reject log persistence. Bound ordinary object-log and trace reads, keep persistence and internal verification queued, and return retryable 503 responses when reads are busy. Leave feedback exports unsent until every log page is available.

Validation: 72 latest-master affected tests and 10 workflow tests pass locally, with the workflow fixture passing strict TypeScript checks. The preceding broader run passed 280 server tests with two opt-in S3 skips. All applicable checks on d0a937768d are green (56 success, three skipped); exact-head Apex review is 5/5 with no unresolved findings. Background persistence still has no fixed queue bound during a prolonged storage outage.

Co-Authored-By: Claude Opus 5.5 <noreply@anthropic.com>
Co-Authored-By: Paperclip <noreply@paperclip.ing>
2026-11-06 13:47:25 -08:00
DottaandClaude Opus 5.5 02a2299173 feat(codex): default Codex to gpt-6.1-sol, half the gpt-5.6-sol price (#19623)
## Thinking Path

> - Paperclip is the open source app people use to manage AI agents for
work
> - Codex agents run through Paperclip Runner or the legacy
`codex_local` harness, and the runner E2E suites run paid Codex cells
> - The shared Codex default and many selections preferred `gpt-5.6-sol`
> - The reviewed OpenAI rate card in
`server/src/services/codex-pricing.ts` (`openai-standard-2026-09-30`)
prices `gpt-6.1-sol` at $2 input / $0.10 cached / $10 output per 1M
tokens, and `gpt-5.6-sol` at $4 / $0.40 / $20
> - So every default run and every paid Codex eval cell cost twice as
much as necessary
> - This pull request moves every place that prefers or selects
`gpt-5.6-sol` to `gpt-6.1-sol`, and keeps historical facts, rate cards
and compatibility fallbacks on `gpt-5.6-sol`
> - The benefit is half the token price for new default Codex agents and
for the Codex E2E and TestOps cells

## Linked Issues or Issue Description

**What existing behavior does this improve?**
The default Codex model for new agents and the Codex model that the
runner E2E suites and TestOps plans select.

**Subsystem affected**
Adapters (`adapter-utils`, `codex-local`), server native runtime
fallback, UI AI connection pools, Paperclip Runner devtools and live
evals, runner E2E catalog and TestOps mappings.

**Current behavior**
New Codex agents without an explicit model store `gpt-5.6-sol`. The
runner E2E `runner-codex` profile, the Reliability `queue-steer` plan
cell, the Product regression TestOps mapping and the ACPX Codex
qualification selection all use `gpt-5.6-sol`.

**Proposed behavior**
They use `gpt-6.1-sol`. Existing agents that store a model keep it.
`gpt-5.6-sol` stays selectable.

**Reason and benefit**
`gpt-6.1-sol` costs half as much per token on the in-repo reviewed rate
card. The current OpenAI pricing page (retrieved 2026-11-06) shows the
same short-context rates and also lists long-context rates of $4 / $0.20
/ $15 for `gpt-6.1-sol` against $8 / $0.80 / $30 for `gpt-5.6-sol`.

**Breaking changes**
None for stored configurations. See Risks.

## What Changed

Changed defaults and selections (all now `gpt-6.1-sol`):

- `PAPERCLIP_RUNNER_DEFAULT_MODELS.codex` in
`packages/adapter-utils/src/paperclip-runner-permissions.ts`. This also
changes `DEFAULT_CODEX_LOCAL_MODEL`,
`resolvePaperclipRunnerModel("codex", …)`, runner config normalization,
`codex_local` → Paperclip Runner conversion, the UI new-agent and
agent-config defaults, the composer default model and the public MCP
effort lookup.
- `codex-local` `models`: the 5.6 entry is now the literal
`gpt-5.6-sol`, because it used to be `DEFAULT_CODEX_LOCAL_MODEL`. The
list order and contents do not change.
- AI connection pool: a new OpenAI member profile uses
`PAPERCLIP_RUNNER_DEFAULT_MODELS.codex` instead of a hard-coded
`gpt-5.6-sol`.
- Paperclip Runner devtools ACPX Codex default and preset, the
`runner-codex-sol` local provider smoke, and the `acpx-codex-sol` live
workflow candidate.
- `tests/acpx-qualification-models.ts` Codex selection (runner E2E and
runner acceptance ACPX Codex profiles).
- Runner E2E: the `runner-codex` profile follows the default, so all
native Codex cells move. This includes the `runner-codex` cells among
the 52 standard `everyday-workflows` cells and the seven Codex
reliability cells. `runner-codex-mini` stays on `gpt-5.4-mini`. The
Reliability plan `queue-steer` `steeringProfile` is now
`['runner-codex', 'gpt-6.1-sol']`. Its executionId
(`everyday-workflows.runner-codex.daytona.queue-steer`), its fullName
and its TestOps case identity do not change. No separate profile is
necessary.
- `product-regression-testops.mjs`: the declared model for every
`runner-codex` case is now `gpt-6.1-sol` (it was already that for
`configured-repository`).
- `tests/runner-e2e/installed-cli.ts`: the credential-free installed
startup proof opens a session on the default model.
- `tests/runner-e2e/scheduled-prices.json`: add a `gpt-6.1-sol` price
(`openai-standard-2026-11-06`, including 30m/12h cache writes and
long-context rates from the OpenAI pricing page). The weekly scheduled
Codex cells need an exact price for their model, or admission fails
closed.
- Storybook: the composer model picker fixtures, the connection pool
stories and host, and the agent settings preview show `gpt-6.1-sol` as
the default.
- Docs: `doc/DEVELOPING.md` (the Codex conversion default) and
`tests/runner-e2e/EVERYDAY-WORKFLOWS.md` (local matrix, reliability
extras, `queue-steer` row).
- Tests that assert the default now expect `gpt-6.1-sol`. New
assertions: the default has the `0.159.0` CLI floor, the compatibility
fallback is floor-free, the `queue-steer` plan cell runs `runner-codex`
on `gpt-6.1-sol`, and all native Codex everyday cells (standard and
reliability) use `gpt-6.1-sol`.

Deliberately kept on `gpt-5.6-sol`:

- Rate cards: `server/src/services/codex-pricing.ts` and
`packages/paperclip-runner/src/evals/model-pricing.ts`. Old receipts
need them. (The runner eval rate card has no `gpt-6.1-sol` entry. An
unpriced candidate is reported as unpriced, not as zero. I did not add a
rate there because that card has its own version and source.)
- The remote Codex CLI compatibility fallback. A new
`CODEX_LOCAL_COMPATIBILITY_FALLBACK_MODEL = "gpt-5.6-sol"` replaces the
default in `codexModelFallbackCandidates`. `gpt-6.1-sol` needs Codex
0.159.0 or newer, so it cannot be the floor-free last resort. Fallback
behavior is unchanged.
- `tests/runner-e2e/provider-usage.ts`: the implicit request
cache-policy attribution stays qualified only for `gpt-5.6-sol`. I did
not verify that policy for `gpt-6.1-sol`. A `gpt-6.1-sol` response that
omits the write-TTL split keeps its cache-write cost unknown, which is
the existing behavior for unqualified models.
- `tests/runner-e2e/scheduled-measurements.json`: historical
`gpt-5.6-sol` measurements. They no longer match the current suite
definitions, so the forecast reports them as historical only. The
forecast tests now build their synthetic cohorts on the current
definition hash.
- Model catalogs that list `gpt-5.6-sol` as available (`codex-local`,
`cursor-local`, `opencode-local`, Speko voice diagnostics, Pi picker
fixture).
- The `gpt-5.6` → `gpt-5.6-sol` alias for old stored configs.
- Dated or evidence docs: `doc/plans/*`, `doc/adapter-model-audit-*`,
`QUALIFICATION-*`, `doc/connections/MEMORY.md`,
`doc/connections/TASK-REVIEWS-VERIFICATION.md`,
`tests/runner-e2e/CHAT-FEATURES.md`, the Slack eval evidence, and the
S49 soak signature text (the soak failure happened on `gpt-5.6-sol`).
- Test fixtures that parse, price, migrate or round-trip an existing
`gpt-5.6-sol` value (Rust runner tests, driver tests, pricing tests,
stored-config tests, stories that show an existing agent).

## Verification

- `npx vitest run` on every server, UI, adapter-utils and codex-local
test file that mentions `gpt-5.6-sol` or the default, plus all of
`packages/adapter-utils` and `packages/adapters/codex-local`: 5,483
passed. Three timeouts under load (`sandbox-managed-runtime`,
`acp.quota`) passed when rerun.
- `packages/paperclip-runner`: `vitest run` for `src/eval`, `src/evals`,
`src/drivers/acpx`, `src/drivers/codex`, `src/cli`, `src/contracts`,
`src/backends`: 2,641 passed.
- `node --test tests/runner-e2e/reliability-testops.test.mjs
tests/runner-e2e/product-regression-testops.test.mjs`: 28 passed.
- `node tests/runner-e2e/run-unit.mjs`: all model, catalog, reliability,
scheduled and TestOps tests pass. Failures remain only in
`copilot-protection-flow`, `denied-target-isolation-flow`,
`pi-controls-flow`, `workflow-target` and `unit-launcher`. These five
also fail on unmodified master in this local environment (filesystem
watch and git environment), and they do not touch models.
- `vitest run --config tests/runner-acceptance/vitest.config.ts`: 19
passed.
- `pnpm test:e2e:runner -- --list --suite everyday-workflows --group
reliability`: the seven `everyday-workflows.runner-codex.daytona.<case>`
cells show `gpt-6.1-sol` with `OPENAI_API_KEY,DAYTONA_API_KEY`.
`--matrix-json` gives 16 reliability cells with the same credentials as
before. `--list --all` shows no `gpt-5.6-sol` cell.
- Typecheck: `adapter-utils`, `adapter-codex-local`, `server`, `ui`,
`paperclip-runner` (TypeScript), and `pnpm test:e2e:runner:typecheck`.
- `pnpm check:token-gates`: clean.
- Not run: paid cells, Rust tests (no Rust change), the browser suites,
and the full `pnpm -r typecheck` / `pnpm build` (CI runs them).

## Risks

- Agents without an explicit model change model on their next save or
normalization, and Paperclip Runner rows with a blank model use
`gpt-6.1-sol` at execution. Stored models, including `gpt-5.6-sol`, are
never rewritten. No migration is necessary.
- `gpt-6.1-sol` needs Codex CLI 0.159.0 or newer with ChatGPT sign-in.
The runner pins `@openai/codex@0.160.0`. On a remote target with an
older image CLI, the existing compatibility check falls back to
`gpt-6-sol` and then `gpt-5.6-sol`, and that probe now runs for
default-model agents too. A legacy `codex_local` agent created with the
new default on a host with an older Codex CLI gets the existing
actionable "upgrade Codex" Test result.
- Qualification: the native Codex profile uses `adapter_constant` model
qualification, so it follows the default. No qualification gate is
dropped. The ACPX Codex qualification selection moves to `gpt-6.1-sol`.
Its next qualification run uses the new model. The provider-usage
cache-policy attribution stays limited to `gpt-5.6-sol`.
- Runner E2E history: the Codex cells change their suite definition
hashes, so earlier `gpt-5.6-sol` results are a separate cohort and do
not count as current.
- The `gpt-6.1-sol` scheduled price uses the file's existing `expiresAt`
(2026-11-19). It needs the same review as the other entries before then.
- No `.github/` change. The Reliability queue-steer cell keeps the
`runner-codex` profile id, so the existing workflow credential and setup
steps still match.

> For core feature work, check [`ROADMAP.md`](ROADMAP.md) first and
discuss it in `#dev` before opening the PR. Feature PRs that overlap
with planned core work may need to be redirected — check the roadmap
first. See `CONTRIBUTING.md`.

## Model Used

- Claude Opus 5.5 (Anthropic), model ID `claude-opus-5-5`, running in
Claude Code with tool use (shell, file edits, web fetch of the OpenAI
pricing page).

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have searched GitHub for duplicate or related PRs and linked
them above
- [x] I have either (a) linked existing issues with `Fixes: #` / `Closes
#` / `Refs #` OR (b) described the issue in-PR following the relevant
issue template
- [x] I have not referenced internal/instance-local Paperclip issues or
links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip`
URLs)
- [x] My branch name describes the change (e.g. `docs/...`, `fix/...`)
and contains no internal Paperclip ticket id or instance-derived details
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [ ] All Paperclip CI gates are green
- [ ] Greptile is 5/5 with no open P2s, recommendations, or follow-ups
- [x] I will address all Greptile and reviewer comments before
requesting merge

Related: #19604 (commits the Reliability TestOps identities; this PR
changes only `steeringProfile` in the same file).

🤖 Generated with [Claude Code](https://claude.com/claude-code)

Co-authored-by: Claude Opus 5.5 <noreply@anthropic.com>
2026-11-06 15:35:34 -06:00
2e35730637 feat(chat): receive sealed Slack events through the current SDK owner (#19019)
## Thinking Path

> - Paperclip manages AI agents and their work.
> - Slack connectors turn authenticated messages into company work.
> - Direct callbacks need an awake tenant.
> - Cloud can retain authenticated asynchronous events until the tenant
wakes.
> - Replay must preserve the original callback proof and current
endpoint authority.
> - Configuration changes must retain registration responsibility
through failures.
> - This PR enrolls verified Slack identities and drains sealed events
through the normal SDK owner.

## Linked Issues or Issue Description

**Subsystem affected**

Server chat connectors and signed Cloud connector delivery.

**Problem or motivation**

Direct Slack Events API delivery depends on an awake tenant. Broker
outages, lost responses and configuration changes must preserve delivery
and registration responsibility. Enrollment failures must also leave
other connector events able to drain.

**Proposed solution**

Stage nonsecret enrollment or retirement intent inside the local
configuration transaction. Let the existing connection-event owner
perform broker requests and retries. Replay sealed events through the
current Slack SDK with their original authentication evidence.

**Alternatives considered**

An early acknowledgment for every callback changes command and modal
semantics. A second delivery ledger duplicates existing ownership.
Reusing a new stack identity to retire old registrations crosses an
authorization boundary.

A companion Cloud broker change is required. Related setup fixes: Refs
#18837, Refs #18878. Kickoff searches found no competing async
enrollment consumer. The ROADMAP's connector setup and access controls
stay in place.

## What Changed

- Persist enrollment and credential-free retirement intent before local
configuration commits. Broker failure does not make a completed pause or
removal look unsuccessful.
- Bind company, endpoint, connection, public ID, generation and
authorized actor. Preserve lost-response responsibility and recover only
the supported same-instance configuration outage.
- Permit an explicit move to a new authorized stack only after confirmed
old retirement. Keep the old identity until the new broker receipt
matches the current intent and generation.
- Show permanent signing-credential failures as attention. Preserve
transient retries and reject uncertain inbound authentication before SDK
admission.
- Drain events and acknowledgments before enrollment reconciliation.
Persist a bounded retry on the exact busy intent so other due endpoints
can enroll or retire. Preserve current custody under concurrent changes.
- Stage retirement in the Apps removal transaction too. Archive the
endpoint and connection, retain the original subject and instance, then
revoke credentials. Retirement does not need the deleted Slack
credential.
- Acknowledge a malformed sealed Slack receipt as invalid once. Keep
actual broker outages on the retry path.
- Run the real configuration, SDK ingress, generation fences and public
Apps removal paths in the default SQL suite. Keep Vitest transport
helpers outside production services.
- Preserve original callback bytes, signature, time and public URL
evidence. Use the existing transactional chat-delivery ledger for
redelivery.
- Provide a checked-in prewire guard and launcher using the current Node
executable. Add broker, worker, SDK, SQL and controlled-process
acceptance.
- Stabilize AI account summaries by ID and grant ID. This fixes a CI
migration-repeat equality failure without changing SQL, authorization or
reconnect behavior.
- Open the four configured database connections before the enrollment
test freezes its clock. Keep all 35 original assertions and all
timeouts.
- Measure status-card dispatch entry before its mock does database work.
Keep the original strict 500 ms bound and check any still-armed earlier
deadline. Bound that fixture's pool to four connections.

## Verification

- Candidate: `54fa701d41b4ced62f4ff338d39b946015670ae3`. Normal merges
preserve master `47027e7` and all owned changes. A read-only merge
assessment against fetched master `cb5d7e44` is conflict-free. The only
overlapping file has separate AI test additions. The branch has not
merged that later master; fresh remote checks must validate the current
PR test tree.
- At this head, normal server production typechecking and declaration
emission passed in 35.24s. The affected actual CI test shard passed in
6.27s. Other unchanged CI layers, 92 affected pure controls and 12 guard
controls retain their source-matched results.
- All **15 default real-PostgreSQL cases passed in 34.66s**, with no
skips or filtering. They cover normal configure and SDK ingress,
rollback, stale generations, malformed receipts, busy-lease fairness,
concurrent intent custody, unknown errors, and public Apps removal.
Removal tests check actual credential revocation, retained retirement
through outage and repeat removal, one ordinary retry and confirmed
retirement, transaction rollback and foreign-company refusal.
- The public removal counterfactual failed before the fix: archival and
credential revocation passed, but the inactive intent was absent. The
same test source passed after the staging call. Separate counterfactuals
also reproduced busy-endpoint starvation and malformed-receipt retries.
Original failures remain retained.
- The paired broker/SDK/process journey passed in 31.98s at ancestor
`0324c011`. It preserves callback proof, lost-ACK redelivery, exactly
one comment, one delivery and one successful controlled process. Its
test, producer, SDK, guard and runtime bytes are unchanged. The new
public Apps archive branch is not called by that journey; its evidence
carries on that checked basis.
- The new SQL cases need no companion Cloud checkout. Normal CI runs
them with the repository fixture. For an existing dedicated PostgreSQL
fixture, set `PAPERCLIP_SLACK_OWNER_TEST_DATABASE_URL` and
`PAPERCLIP_TEST_POSTGRES_ADMIN_URL`, then run `node
server/scripts/test-slack-cloud-owner.mjs` with Node24. The optional
paired launcher still requires the normally built companion Cloud
checkout.
- Every pool was bounded to four or fewer connections. The final 15-case
run sampled three runtime clients plus one observer. The independent
final audit found zero clients and all five recorded processes absent.
Earlier closing-socket observations are kept separate from final
cleanup.
- Earlier unrelated CI failures are documented: [enrollment
timeout](https://github.com/paperclipai/paperclip/actions/runs/41944373937/job/126973483754)
and [status-card observation
bound](https://github.com/paperclipai/paperclip/actions/runs/41944373937/job/126973483843).
The enrollment test retains all 35 assertions and its original timeouts.
A controlled connection probe established the frozen-clock mechanism;
the original remote access history remains unknown. The status-card
fixture measures dispatch entry with the original strict 500ms bound. A
real delayed-dispatch control fails that bound.
- Full local workspace typecheck, build and test inventory was not run
because its embedded-cluster and wider resource paths exceed this local
lease. Exact-head remote CI now passes: 54 successful checks, three
skips and Ponytail's neutral check, with aggregate verification green
and the legacy security context independently confirmed successful. Both
complete bot reviews are 5/5, with all 13 paginated review threads
resolved. Seven execution jobs originally reported runner shutdown; one
diagnostic rerun recovered them and the dependent aggregate check.
Original logs remain retained, and the underlying shutdown cause is
unknown. This is recovery evidence, not a product-fix claim.
- Provider responses are controlled. This proves local SQL, broker, SDK
and process behavior. It does not prove live Slack, agent tools,
synchronous callbacks or deployed suspension.

## Risks

The companion broker is required. Outage or conflicting authority can
leave explicit pending or attention responsibility. A move between
stacks requires confirmation from the old authorized owner first.
Synchronous commands, actions, modal validation, options and challenges
retain their deadlines and endpoint blocker. This slice grants no full
Slack endpoint sleep exemption. No deployed suspension or savings claim
is made.

## Model Used

OpenAI `gpt-6.1-sol` workers through Codex, with reasoning, repository
tools and code execution. The served backend revision and context limit
are not exposed. A GPT-6-family coordinator performed technical review
and integration.

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have searched GitHub for duplicate or related PRs and linked
them above
- [x] I have either (a) linked existing issues with `Fixes: #` / `Closes
#` / `Refs #` OR (b) described the issue in-PR following the relevant
issue template
- [x] I have not referenced internal/instance-local Paperclip issues or
links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip`
URLs)
- [x] My branch name describes the change (e.g. `docs/...`, `fix/...`)
and contains no internal Paperclip ticket id or instance-derived details
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [x] All Paperclip CI gates are green
- [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups
- [x] I will address all Greptile and reviewer comments before
requesting merge

---------

Co-authored-by: Paperclip <noreply@paperclip.ing>
Co-authored-by: Codex <noreply@openai.com>
2026-11-06 15:22:51 -06:00
DottaandClaude Opus 5.5 876a2e4857 fix(recovery): recover a prior boot's unstarted run at lease expiry (#19578)
## Thinking Path

> - Paperclip is the open source app people use to manage AI agents for
work
> - After a server restart, a task must continue automatically and
promptly when that is safe
> - A user clicks Retry, and the server is killed before the new run
starts a process
> - Recovery leaves that run `running` until the orphan reap's
five-minute stale-age threshold passes
> - The user sees nothing happen for about five minutes
> - This pull request recovers that run when its controller lease from
the earlier boot expires
> - The benefit is that the automatic retry starts about one lease
period after the kill, not five minutes later

## Linked Issues or Issue Description

**What happened?**
A Retry admitted a legacy run. The server was killed before the run
recorded a process. The run kept a controller lease from the killed boot
and `executionStage: preparing`. After the restart, live recovery
skipped the run until `updatedAt` was five minutes old
(`server/src/services/heartbeat/recovery.ts`, `staleThresholdMs ?? 5 *
60_000`). Restart-chaos measured 5 m 01 s from run creation to
`process_lost` and the automatic retry, twice (4 m 20 s after the server
was ready).

**Expected behavior**
Recovery should claim the run as soon as the earlier boot's lease
expires. The lease is the only liveness proof for a legacy controller,
and no process was ever recorded.

**Paperclip version or commit**
`master` at `71313207eb`.

**Steps to reproduce**
Click Retry on an interrupted task, then SIGKILL the server within about
one second. Observe the retried run stay `running` for about five
minutes.

## What Changed

- `recoverActiveExecutions` skips the stale-age gate for a legacy
`running` run when all of these are true: its controller lease is
expired (checked by the existing live-lease gate), the lease belongs to
an earlier boot (`controllerBootId !== legacyControllerBootId`), the run
is still `preparing` (no adapter dispatch), and the run has no recorded
`processPid` or `processGroupId`.
- The stage and process fields committed with the revocation are checked
again. If the old controller dispatched before its lease expired, the
run keeps the age guard.
- The existing revocation (`revokeExpiredLegacyControllerWithState`)
still requires the expired boot ID, so a concurrent renewal wins. The
existing `restartInterruptedBeforeDispatch` rule still decides the
single process-loss retry.
- `doc/execution-semantics.md` describes the rule in section 10.
- Two regressions in `server/src/__tests__/live-recovery-work.test.ts`
(embedded Postgres, real residual-recovery workers).

## Verification

- Red before the fix: `recovers a fresh run from a prior boot at lease
expiry ...` failed with `expected 'running' to be 'failed'`.
- Green after the fix: `pnpm exec vitest run
src/__tests__/live-recovery-work.test.ts -t "stale-age|fresh foreign
controller|suppressed live runs"` passes 4/4. The run fails
`process_lost` with `executionRecovery.providerWorkStarted: false`
within seconds of lease expiry, and exactly one retry runs to
`succeeded`.
- Race case: a DB trigger makes the row committed with the revocation
say `dispatching` while the scan saw `preparing`. The run stays
`running`, and no retry is created.
- Guard cases: a run with an expired lease of the current boot, a run
from an earlier boot with a recorded process, and a run from an earlier
boot that was `dispatching` (for example a remote HTTP adapter) all stay
`running` after four minutes.
- Related suites: `heartbeat-process-recovery`,
`heartbeat-observed-workspace-preservation`,
`native-startup-cleanup-recovery`,
`services/heartbeat/recovery.test.ts`, full `live-recovery-work`.
- Live K8 probe (restart-chaos supervisor, local instance, ACPX Claude
agent): the first run fails with a provider error, the probe clicks
Retry, and the server is SIGKILLed 100 ms later, before the Retry run
records a process. The probe then measures how long the Retry run stays
`running`.

| Build | Retry run created to `process_lost` | Server ready to
`process_lost` | Automatic retry run |
  | --- | --- | --- | --- |
  | Base (`71313207eb`) | 300.1 s | 293.5 s | started at 5 m 00 s |
  | This PR | 60.1 s | 54.5 s | started 0.1 s after `process_lost` |

The claim now happens when the killed boot's 60-second controller lease
expires. In this probe the restart took about 6 s, so the claim came
about 54 s after ready. In the restart-chaos waves, kill to ready took
about 41 s, so the claim would come about 20 s after ready.
- A chaos wave with the `retry` trigger (`w-20261106T195715-s2727`,
branch #19513 merged locally) missed the trigger: no Retry was offered
because recovery completed the task automatically (claude t01 PASS). The
probe above makes the Retry-then-kill timing deterministic.

## Risks

- Low risk. The change only removes an age wait. Ownership is still
proved by the expired lease of another boot. A rolling deploy or hot
restart whose earlier instance is still alive keeps renewing its lease,
so the run is not touched.
- Runs with a recorded process, and dispatched runs, keep the
five-minute guard. A process on another host or a remote request is not
inferred dead.
- Native runs are not changed. Their ownership is in
`native_run_finalizations` and startup native recovery.

> For core feature work, check [`ROADMAP.md`](ROADMAP.md) first and
discuss it in `#dev` before opening the PR. Feature PRs that overlap
with planned core work may need to be redirected — check the roadmap
first. See `CONTRIBUTING.md`.

## Model Used

- Claude Opus 5.5 (`claude-opus-5-5`), Anthropic, via Claude Code with
tool use (shell, file edits, test execution). Extended reasoning
enabled.

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have searched GitHub for duplicate or related PRs and linked
them above
- [x] I have either (a) linked existing issues with `Fixes: #` / `Closes
#` / `Refs #` OR (b) described the issue in-PR following the relevant
issue template
- [x] I have not referenced internal/instance-local Paperclip issues or
links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip`
URLs)
- [x] My branch name describes the change (e.g. `docs/...`, `fix/...`)
and contains no internal Paperclip ticket id or instance-derived details
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [x] All Paperclip CI gates are green
- [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups
- [x] I will address all Greptile and reviewer comments before
requesting merge

🤖 Generated with [Claude Code](https://claude.com/claude-code)

---------

Co-authored-by: Claude Opus 5.5 <noreply@anthropic.com>
2026-11-06 15:17:58 -06:00
DottaandClaude Opus 5.5 586caa5f49 fix(native): hand a shutdown-interrupted startup to the next controller (#19596)
## Thinking Path

> - Paperclip is the open source app people use to manage AI agents for
work
> - The native Runner path runs an agent turn through a runnerd process
that the control plane owns
> - A restart of the control plane must keep the task going without a
click, if that is safe
> - A graceful shutdown closes the HTTP listener first and then drains
the heartbeat runs
> - A native run that was between provider dispatch and runnerd backend
setup in that gap failed with `local_runtime_api_listener_unavailable`,
so the drain did not see it as running and did not suspend it for the
next boot
> - This pull request makes that failure a restart detach: the run stays
running with its claim, the drain suspends it, and the next controller
adopts it
> - The benefit is that a SIGTERM in this window no longer spends a
failure and a same-run retry, and the task continues by itself

## Linked Issues or Issue Description

Refs #19530 (the same restart window, before provider dispatch).

**What happened?**

In a restart chaos replay (ACPX Claude, local runner), a
restart-recovered run got SIGTERM while
`createRunnerdBackendWithinSessionClaim` built the runnerd backend.
`resolveLocalRuntimeApiUrl()` threw
`local_runtime_api_listener_unavailable` because shutdown had already
closed the listener. The run settled `failed`. The drain then logged
`restartSuspendedRunIds: []`. The next boot used the one bootstrap
retry. A second SIGTERM hit the same window, and the task stopped at a
manual Retry.

**Expected behavior**

A run that this process cannot continue because it is shutting down is
handed to the next controller. It is not settled as failed.

**Steps to reproduce**

1. Start a native Runner task and restart the server (K1) so that
startup recovery resumes the run.
2. Send SIGTERM while the resumed run sets up its runnerd backend.
3. See the run fail with `local_runtime_api_listener_unavailable` and
the drain report no suspended runs.

## What Changed

- `server/src/runtime-api.ts`: `resolveLocalRuntimeApiUrl()` throws the
new `LocalRuntimeApiListenerClosedError` when this process had a
listener and closed it (the `listening` flag is false or the `close`
event fired). The error message stays
`local_runtime_api_listener_unavailable`, so the existing classifiers do
not change. A listener that never started still throws the plain error.
- `server/src/services/native-runtime/native-session-executor.ts`: for a
local Runner, the startup failure handler treats
`LocalRuntimeApiListenerClosedError` like a restart detach. It stops
lease renewal, keeps the claim and throws
`NativeControllerDetachedForRestartError`. Heartbeat already keeps such
a run `running`. A remote Runner keeps the same-run bootstrap retry from
#19462, because startup recovery has no process evidence to adopt a
claimed remote startup
(`native-runner-restart-preparation.integration.test.ts` still covers
that path).
- `doc/execution-semantics.md`: describe the new rule.
- Tests: a heartbeat regression that closes the real runtime API
listener before backend setup, then drains and restarts; a unit test for
the closed versus never-started listener; two `vi.mock` factories keep
the real module exports.

## Verification

- Red before the fix: `pnpm exec vitest run
src/__tests__/heartbeat-native-restart-suspension.test.ts -t listener`
failed with `restartSuspendedRunIds: []` and the run `failed`
(`local_runtime_api_listener_unavailable`, `bootstrap_retry`).
- Green after the fix: the same test passes. The drain suspends the run,
the run stays `running` with `awaiting_runner_reattach`, and the next
controller claims it and reaches the backend once.
- `pnpm exec vitest run
src/__tests__/heartbeat-native-restart-suspension.test.ts
src/http/server.test.ts
src/__tests__/server-startup-feedback-export.test.ts
src/services/native-runtime/native-session-executor.test.ts
src/services/native-runtime/native-recovered-owner-followup.test.ts`:
1333 tests pass. One timing test in `native-session-executor.test.ts`
failed once under host load average ~30 and passed alone.
- `pnpm exec tsc --noEmit -p server/tsconfig.json`: pass.
- Live, restart chaos harness, local ACPX Claude (`claude-sonnet-5`),
`--rc06-masked`, this branch at a35ec8b845 (before the remote-scope
commit 5dc63f24fb, which does not change the local path). The original
replay schedule no longer reached the window, because the task now ends
before the second fault. So I moved the faults earlier: K1 at 10 s, then
K2 as soon as the recovered server is ready.
- K1 + K2, 2 runs: both runs PASS with **R1 pass**. Each drain logged
`restartSuspendedRunIds: [<run>]` (before: `[]`). The next boot
classified the run `resume_dead_runner` and the same run completed. No
`local_runtime_api_listener_unavailable` failure.
- K1 + K2 + K2, 2 runs: each drain suspended the run. The fourth boot
blocked the run with `native_restart_recovery_blocked`, because three
restart claims used the three-attempt recovery budget. Retry then
completed the task (R3 pass). That budget count is a separate open item.
This pull request does not change it.

## Risks

- Low. The new path applies only after this process closed its own
listener, which happens only during shutdown. The run then waits for the
drain or the next boot, as for the other restart detaches.
- If shutdown does not reach the drain (for example SIGKILL after the
listener closes), the run keeps its live claim until the claim expires.
Then startup recovery handles it as a hard restart. This is the same as
any run that is running at a hard kill.

## Model Used

- Claude Opus 5.5 (`claude-opus-5-5`), Anthropic, through Claude Code
with tool use (shell, file edits, GitHub CLI). Extended reasoning on.

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have searched GitHub for duplicate or related PRs and linked
them above
- [x] I have either (a) linked existing issues with `Fixes: #` / `Closes
#` / `Refs #` OR (b) described the issue in-PR following the relevant
issue template
- [x] I have not referenced internal/instance-local Paperclip issues or
links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip`
URLs)
- [x] My branch name describes the change (e.g. `docs/...`, `fix/...`)
and contains no internal Paperclip ticket id or instance-derived details
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [x] All Paperclip CI gates are green
- [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups
- [x] I will address all Greptile and reviewer comments before
requesting merge

🤖 Generated with [Claude Code](https://claude.com/claude-code)

---------

Co-authored-by: Claude Opus 5.5 <noreply@anthropic.com>
2026-11-06 15:10:44 -06:00
DottaandClaude Opus 5.5 dc1adb7209 fix(tasks): advertise a native resume only while the scheduler would claim it (#19523)
## Thinking Path

> - Paperclip is the open source app people use to manage AI agents for
work
> - When a native run cannot reattach to its provider after a
control-plane restart, the native coordinator resumes the same run by
itself after about 30 seconds, up to three attempts
> - The run projection shows this correctly as "Retry scheduled" with
only `inspect_run` permitted
> - The task interruption shown on the issue read only system-recovery
evidence and `scheduledRetryAt`. It never read the coordinator's
`nextAttemptAt`, so it showed `state: failed, canRetry: true` and
offered a manual Retry while the automatic resume was still pending
> - The two surfaces disagree, and a user click can race the automatic
resume. That is one way a Retry gets parked behind "execution checks"
> - #19503 made the task interruption read the coordinator's pending
resume time. Review found that the coordinator also pushes that time
forward while it defers an ineligible candidate, so a reassigned or
blocked task could hide Retry for good
> - This pull request advertises the resume only while the scheduler's
synchronous admission checks pass
> - The benefit is one consistent story: while the automatic resume is
pending, the task shows it with its time and no competing Retry. If
recovery ends, exactly one Retry returns

## Linked Issues or Issue Description

Follow-up to #19503. Refs #19487, #19497.

**What happened?**
A native run failed with `native_session_interrupted` after a restart.
Its finalization row had `phase: retryable_failure` and `nextAttemptAt`
30 seconds later. The run projection said "Retry scheduled". The issue
interruption said `state: failed, canRetry: true, nextRetryAt: null`.

**What did you expect?**
While the automatic resume is pending, the task shows that it is
resuming, with the time, and no Retry. When the resume fails for good or
never runs, exactly one Retry that works on the first click.

**Steps to reproduce**
1. Run a native task and restart the control plane so the native attach
fails.
2. Read `GET /api/issues/:id` while the coordinator's resume is pending.
3. Observe `interruption.canRetry: true` while `execution.phase` is
`retry_scheduled`.

## What Changed

- `task-interruption-presentation.ts`: the pending-resume read now also
requires the task to be in a resumable status, assigned to the run's
agent, not owned by another execution or checkout run, the run's
question not cancelled, and the agent invokable (not paused, terminated
or pending approval). These mirror `readNativeSessionResumptionAgent`.
- `native-session-resumption-statuses.ts`: one shared status set used by
both the scheduler admission and the read model.
- No time cap: provider cooldowns and remote backoff schedules stay
visible as a pending resume.

## Verification

- `task-interruption-query.test.ts` (embedded Postgres): a reassigned
task and a blocked task show one Retry; a paused agent asks to be
resumed; in each case `readNativeSessionResumptionAgent` also refuses
the candidate, so the read model and the scheduler agree. A resume an
hour out (provider cooldown) stays `retry_scheduled` with no Retry. Red
on master for the reassigned case.
- All 57 presentation and query tests pass. Server typecheck passes.

## Risks

- Low risk. Read model only.
- A review-assignment resume (reviewer is not the assignee) shows Retry
instead of the pending resume. That is the safe fallback.
- Deferrals for a pause hold, dependency readiness or a competing run
are not mirrored. Those gates also hold a manual Retry, so no competing
action appears.
- The `POST /issues/:id/retry` endpoint is unchanged.

## Model Used

- Claude Opus 5.5 (`claude-opus-5-5`), Anthropic, via Claude Code with
tool use (shell, file editing, embedded Postgres tests).

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have searched GitHub for duplicate or related PRs and linked
them above
- [x] I have either (a) linked existing issues with `Fixes: #` / `Closes
#` / `Refs #` OR (b) described the issue in-PR following the relevant
issue template
- [x] I have not referenced internal/instance-local Paperclip issues or
links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip`
URLs)
- [x] My branch name describes the change (e.g. `docs/...`, `fix/...`)
and contains no internal Paperclip ticket id or instance-derived details
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [ ] All Paperclip CI gates are green
- [ ] Greptile is 5/5 with no open P2s, recommendations, or follow-ups
- [x] I will address all Greptile and reviewer comments before
requesting merge

🤖 Generated with [Claude Code](https://claude.com/claude-code)

---------

Co-authored-by: Claude Opus 5.5 <noreply@anthropic.com>
2026-11-06 14:38:29 -06:00
DottaandClaude Opus 5.5 8c7e86e73b fix(workspaces): let non-git workspace directories pass close readiness (#19553)
## Thinking Path

> - Paperclip is the open source app people use to manage AI agents for
work
> - Execution workspaces hold the files that agents work in, and a
person can close a workspace when the work ends
> - Before close, Paperclip checks "close readiness" so that it does not
destroy unsaved git work
> - The check assumed that every existing workspace path is a git
repository
> - A shared or `local_fs` workspace can be a plain directory. For that
directory, `git rev-parse` fails, and the check reported "Paperclip
could not verify the workspace git status" as a blocking reason
> - So a person could never close these workspaces
> - This pull request treats a path with no `.git` marker as a workspace
with no git state
> - The benefit is that plain-directory workspaces can close, and real
git errors still block close

## Linked Issues or Issue Description

**What happened?**
`GET /api/execution-workspaces/:id/close-readiness` returned `state:
"blocked"` for a `shared_workspace` with provider `local_fs`. The
workspace directory existed but was not a git repository. The only
blocking reason was "Paperclip could not verify the workspace git
status. Retry before destructive cleanup."

**Steps to reproduce**
1. Create a project workspace and an execution workspace
(`shared_workspace`, `local_fs`) whose `cwd` is a plain directory that
exists.
2. Request close readiness for the execution workspace.
3. See `state: "blocked"` and `isDestructiveCloseAllowed: false`.

**Expected behavior**
The workspace is ready to close. It has no git state to lose.

## What Changed

- `inspectGitCloseReadiness` in
`server/src/services/execution-workspaces.ts`: when `git rev-parse
--show-toplevel` fails, the provider is not `git_worktree`, and no
`.git` entry exists on the path or on an ancestor, return `git: null`
with `statusInspectionSucceeded: true`.
- Added `hasGitMarkerInPathOrAncestors`. The check uses the filesystem,
not git error text, so it does not depend on the git locale. It uses
`lstat`, so a dangling `.git` symlink still counts as a marker. Any
error other than `ENOENT` counts as a possible marker, so the check
fails closed.
- For a plain directory, the result is a git readiness object with
`repoRoot: null`, the same shape as the missing-path case.
`createdByRuntime` stays on it, so close readiness still plans
`remove_local_directory` for a runtime-created directory.
- Added two regression tests in
`server/src/__tests__/execution-workspaces-service.test.ts`:
- A plain directory is `ready_with_warnings` with `git: null` and no
blocking reasons. This test failed before the fix (`state: "blocked"`).
- A directory with a broken `.git` pointer is still `blocked` with the
git-status reason.
- A directory with a dangling `.git` symlink is still `blocked`. This
test failed before the second commit.
- A runtime-created plain directory plans `remove_local_directory`. This
test failed before the second commit.
- A plain directory nested under an ancestor with an unreadable `.git`
marker is still `blocked`. This test covers the ancestor walk.

## Verification

- Red/green: the new non-git test failed on `master` (`state:
"blocked"`) and passes with the fix. The broken-git test passes on both.
- `cd server && npx vitest run
src/__tests__/execution-workspaces-service.test.ts
src/__tests__/execution-workspaces-routes.test.ts`: 2 files, 101 tests
pass. The five close-readiness tests also pass after the third commit.
- `pnpm verify` selected 2,223 of 2,991 test files because this service
has many importers. I did not run that near-full suite locally. Required
CI supplies that coverage.
- `tsc -p server/tsconfig.json` shows no errors in the changed files.

## Risks

- Low risk. The change only affects paths where git inspection already
failed.
- With `git: null` removed, the result uses the same `repoRoot: null`
shape as a missing path. Existing code already handles that shape.
- `git_worktree` workspaces still fail closed. A real repository that
git cannot read (corrupt, missing git dir, ownership refusal) still has
a `.git` marker, so it still blocks.
- The terminal-workspace sweep also uses this inspection. With no repo
root there is no HEAD SHA, so delivery cannot be "merged", and the sweep
still skips these workspaces. Only an explicit close by a person
proceeds.
- A `.git` on an ancestor across a filesystem boundary makes git report
"not a repository" while the marker check finds it. That case stays
blocked, which is the safe result.

## Model Used

- Anthropic Claude Opus 5.5 (`claude-opus-5-5`) in Claude Code, with
tool use (shell, file edit, test runs).

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have searched GitHub for duplicate or related PRs and linked
them above
- [x] I have either (a) linked existing issues with `Fixes: #` / `Closes
#` / `Refs #` OR (b) described the issue in-PR following the relevant
issue template
- [x] I have not referenced internal/instance-local Paperclip issues or
links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip`
URLs)
- [x] My branch name describes the change (e.g. `docs/...`, `fix/...`)
and contains no internal Paperclip ticket id or instance-derived details
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [ ] All Paperclip CI gates are green
- [ ] Greptile is 5/5 with no open P2s, recommendations, or follow-ups
- [x] I will address all Greptile and reviewer comments before
requesting merge

🤖 Generated with [Claude Code](https://claude.com/claude-code)

---------

Co-authored-by: Claude Opus 5.5 <noreply@anthropic.com>
2026-11-06 14:33:09 -06:00
DottaandClaude Opus 5.5 4938a930d6 fix(budgets): stop pending or restart-lost accounting from hard-stopping companies (#19497)
## Thinking Path

> - Paperclip is the open source app people use to manage AI agents for
work
> - Budget admission and run accounting decide whether any task in a
company may start
> - A control-plane restart that kills a provider turn mid-flight can
lose that turn's final usage receipt. ACPX Claude reports usage only at
turn end, so the receipt never becomes complete
> - Accounting kept such a run "awaiting receipt" forever. Every later
admission in the company then refused with "completed runs await
accounting", and the budget evaluator opened a hard-stop incident that
paused the company. No product action could clear it: raising the budget
refuses while runs await accounting, accounting retry finds no new data,
and allowing unpriced usage does not apply to pending runs
> - Restart chaos waves showed this as a dead task Retry, a new task
blocked as "over budget" at 22 of 500 cents, and a hard stop that
cancelled queued Retries and an unrelated running task
> - This pull request closes the debt from evidence: once native
recovery reaches terminal failure and the provider stop is verified, the
known part settles as an unpriced charge. Until then the run holds new
work as recovering accounting, without a hard stop
> - The benefit is that a restart no longer bricks a company with a hard
budget. The operator's unpriced-usage policy decides admission, and
unknown spend still never shows as zero cost

## Linked Issues or Issue Description

Refs #19399, #19426, #19431 (earlier restart Retry fixes; this is the
budget layer under the same journey).

**What happened?**
After a control-plane SIGKILL during an ACPX Claude turn, the killed run
ended `native_provider_terminal_failed` with
`usage_json.accountingReceiptReady = false` and `cost_accounting_pending
= true`. It stayed that way for good. The task Retry was accepted but
parked with `budget.blocked` ("Company cannot start work while completed
runs await accounting"), which the UI showed as "Retry is waiting for
execution checks". A new Codex task was escalated to `blocked` with "the
original recovery target is over budget" while the company had spent 22
of 500 cents. After the next restart the budget evaluator opened a
hard-stop incident (`amount_observed` 22.08 < 500), paused the company
and cancelled both queued Retries.

**What did you expect?**
A restart should not stop the company. Unknown usage from a stopped
provider should become an honest, operator-governed state, and Retry
should start a run.

**Steps to reproduce**
1. Give a company a hard-stop budget.
2. Start an ACPX Claude task and SIGKILL the control plane mid-turn, so
the resumed turn fails.
3. Observe the run stay `cost_accounting_pending` with an incomplete
receipt, and every new admission refuse.

## What Changed

- `budgets.ts`: completed runs that await accounting now hold new work
only. They no longer open a hard-stop incident, pause the company, place
an agent budget hold, or deliver Stop to running work. Only spend at the
limit, or unpriced usage under a blocking policy, does that. Chaos wave
A and a pre-restart lifecycle cell showed the wedge: a run that had just
succeeded stayed terminal for about 100 ms before its charge committed,
the evaluator paused the company in that gap, and the Stop it delivered
left a cancelled run whose receipt never closed.
- `run-cost-accounting.ts`: a failed native run is a closed receipt
source only with positive stop evidence: its finalization is
`terminal_failure` with no result (not a finalization-deadline failure),
it no longer records a process identity, and its latest server-authored
process event is `native.local_process_stopped`. One SQL predicate
serves the reconciler scan and settlement. Accounting now settles its
known part as an `unpriced` charge instead of waiting forever. The
background reconciler selects these runs. The reservation settles. Other
incomplete receipts stay pending as before. A cancelled run keeps its
existing accounting drain, so Stop recovery can still deliver its final
receipt.
- `native-local-process-stop.ts` and its transactional callers:
releasing a verified local or remote process stop wakes the accounting
worker, so the closed debt settles promptly.
- `usage-receipts.ts`: a charge settled without its receipt is marked
`accountingReceiptUnavailable`. A later complete receipt that carries
its own price (including a rate-card price) corrects it. A receipt with
no own price and unchanged usage does not reopen the hold.
- `budget-exposure.ts`: the blocking unpriced-usage policy no longer
counts a charge settled from a lost receipt with no observed usage. That
is unknown, not "usage with no reliable price". Complete receipts that
report no tokens (for example Cursor Cloud) still count. A live wave
under the default policy hard-stopped its company at 0 of 500 cents on
one such charge.
- `budget-exposure.ts`: a terminal-failure native run with an
incomplete, not capture-failed receipt counts as recovering accounting.
Admission holds new work ("New work must wait while a native run
recovers its unfinished accounting") without a hard-stop incident, a
company pause or cancellation of running work.
- `recovery/service.ts`: the stranded-work comment names the actual
budget gate instead of always saying "over budget".
- `task-interruption-presentation.ts`: a Retry parked by
`budget.blocked` says it waits for the budget, not for "execution
checks".
- `doc/SPEC-implementation.md`: documents the closed-receipt contract
next to the existing incomplete-receipt rule.

## Verification

- New embedded-Postgres suite
`server/src/__tests__/closed-native-receipt-accounting.test.ts`, built
from the persisted shape of the killed run:
- Red before the fix: the run stayed pending, `reconcileRunCosts`
accounted 0, and admission refused with "completed runs await
accounting".
- Debt stays pending with no verified stop event, with a
finalization-deadline failure, with a recorded process identity, and
while the coordinator can still produce a result.
- Under a blocking policy, a lost receipt with no usage does not
hard-stop; one with tokens still blocks. A run with a still-recorded
process identity paused the company with a hard-stop incident.
- Green after: the stopped run settles as one `unpriced` charge with the
reservation settled; admission is clear under an `allow` policy and
names "no reliable price" under `block`; a run with a recorded process
identity or a non-terminal coordinator stays pending; the closing window
holds admission without an incident or pause; a final receipt that
arrives later still enters late-receipt reconciliation.
- Pending accounting from a run that just finished holds admission with
no incident, no pause, no enforcement version bump, and an unrelated
running run stays running. Red before the `budgets.ts` change: the
company was paused.
- A later priced receipt corrects the unavailable charge to its price;
an unpriced one leaves it settled.
- `task-interruption-presentation.test.ts`: the `budget.blocked` Retry
wait message.
- `budget-enforcement-scoping.test.ts`: the accounting-hold release
cases now assert that pending accounting places no budget hold and that
admission clears after settlement.
- Existing suites pass locally: all budget suites (control publication,
enforcement scoping, enforcement worker, evaluation work, live attempts,
history, service, live usage, budget cancellation),
native-stop-accounting, explicit-native-continuation,
native-case-handoff, cost-data-quality, heartbeat-cost-accounting,
run-cost-accounting, native-usage-delivery. Server typecheck passes.
- Runner e2e cell
`lifecycle-baseline.runner-codex.local.lifecycle-dependency-restart-neutral`,
which failed on master with a false agent budget hold before any
restart, passes on this branch.
- Live restart-chaos wave (local runner, K1 SIGKILL, codex + 2× ACPX
Claude + OpenCode, 4 restarts, company policy `unpricedUsagePolicy:
allow`) with the accounting fix: every killed run settled (no
`cost_accounting_pending` left), the company stayed active, the OpenCode
Retry completed the task on the first click and the Codex Retry finished
its task. That wave also exposed a 1-second false hard stop in the
closing window (observed 0 of 500 cents) that cancelled the running
OpenCode turn; the `budget-exposure.ts` change fixes it and has its own
red/green test.
- Confirming live wave with both commits, same plan (2× ACPX Claude,
OpenCode, Codex; 4 K1 restarts): both Claude tasks passed R3 (one Retry
click started a run that completed the task), OpenCode passed R1
(continued by itself), and the Codex Retry completed its task. Zero
budget incidents, zero cancelled runs, zero runs left pending
accounting, company active; three killed runs recorded as `unpriced`
charges. The only open signature is an unrelated workspace-durability
check (`R2:pre_fault_files_lost` on the Codex long-bench task).

## Risks

- Behavior change: a stopped native run's lost receipt now becomes an
`unpriced` ledger charge with its known usage. If that usage has tokens,
the default `block` policy still stops new work with "recorded usage has
no reliable price". If it has none, the charge is visible in Costs but
does not stop the company. Other unpriced charges keep their existing
effect. Unknown spend is never recorded as a priced receipt. Budget
enforcement stays best effort, as the spec says; killed OpenCode and
Codex requests already lose their in-flight usage.
- Remote runs and runs without a verified local stop keep their debt
pending (an admission hold only, no hard stop).
- Contract change: pending accounting no longer pauses a scope or stops
running work. New work still waits with "completed runs await
accounting". A scope's real hard stop (spend at the limit, or blocked
unpriced usage) is unchanged.
- If a provider stop can never be verified, the run stays "recovering
accounting": new work waits without a hard-stop incident. Before, the
same state paused the company. The hold is visible in admission errors
and Costs.
- A receipt that arrives after settlement posts a late correction. The
original unpriced charge stays in the ledger.
- No schema or migration change.

## Model Used

- Claude Opus 5.5 (`claude-opus-5-5`), Anthropic, via Claude Code with
tool use (shell, file editing, embedded Postgres tests, live
restart-chaos harness).

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have searched GitHub for duplicate or related PRs and linked
them above
- [x] I have either (a) linked existing issues with `Fixes: #` / `Closes
#` / `Refs #` OR (b) described the issue in-PR following the relevant
issue template
- [x] I have not referenced internal/instance-local Paperclip issues or
links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip`
URLs)
- [x] My branch name describes the change (e.g. `docs/...`, `fix/...`)
and contains no internal Paperclip ticket id or instance-derived details
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [ ] All Paperclip CI gates are green
- [ ] Greptile is 5/5 with no open P2s, recommendations, or follow-ups
- [x] I will address all Greptile and reviewer comments before
requesting merge

🤖 Generated with [Claude Code](https://claude.com/claude-code)

---------

Co-authored-by: Claude Opus 5.5 <noreply@anthropic.com>
2026-11-06 14:27:51 -06:00
DottaandPaperclip 0b48bc7ac5 test(connections): isolate scheduled GitHub history scans (#19541)
## Thinking Path

> - Paperclip lets people manage AI agents and their service
connections.
> - Connection identity reads must use the authenticated caller's
current account grants.
> - This integration suite runs the real HTTP routes and bearer
authentication against provider fixtures.
> - An earlier GitHub App fixture stays active after its test ends.
> - Its history worker can run 60 seconds later against the next test's
shared provider handler.
> - This pull request keeps that unrelated worker inactive in this
suite.
> - The identity test keeps its original provider-count and
authorization assertions.

## Linked Issues or Issue Description

**What happened?**

The Anthropic identity integration test reported three provider calls
instead of two. The denied request returned `connection_unavailable`
correctly. A controlled reproduction traced the third call to GitHub's
`/app/hook/config` from an earlier test's webhook recovery worker.

**Expected behavior**

The suite must measure requests from the operation under test.
Foreign-company, unknown-grant, and revoked-grant requests must not
contact the identity provider.

**Steps to reproduce**

Run the GitHub App import fixture before the identity test. Initialize
the saved GitHub recovery epoch. Advance only the fixture Date by 60,001
ms, then run the actual current recovery check after the two authorized
identity reads. The original final count assertion fails with three
calls. The extra call's stack runs through `readGitHubAppWebhookConfig`,
`recoverGitHubWebhookEndpoint`, and the recovery schedule's `check`.

Related implementation: #17666. No duplicate fixture repair was found.

## What Changed

- Keep automatic GitHub webhook history work inactive in this
connection-management test suite.
- Keep real connection setup, HTTP routes, database state, agent API
keys, JWT authentication, and all existing identity assertions.
- Leave production registration and the dedicated chat-channel recovery
tests unchanged.

## Verification

- Exact baseline `5d25117ffad69a93fb92026950b9acd9cec08f69`: the
unchanged focused identity test passed.
- Controlled red on that baseline: the original final
`expect(calls).toBe(2)` failed with three. The third URL was
`https://api.github.com/app/hook/config`. The revoked identity response
stayed unavailable.
- Local provider traffic uses fixture responses. No real provider
credentials or requests were used.
- Full connection-management suite: **90/90 passed** on the exact
release baseline plus this fixture fix (commit `e33c091438`). Command
from `server`: `../node_modules/.bin/vitest run --config
vitest.config.ts --fsModuleCache
src/__tests__/connection-management.integration.test.ts`.
- Rebased onto current master. A fresh GitHub-import plus identity pair
passed **2/2** on final head `95ed6147920e48128892744e1a4f220373f7da5b`
after removal of the added comments required by review. Greptile
reviewed that exact head at **5/5**. The addressed comment thread is
resolved. Required CI remains pending.

Final reviewed head: `95ed6147920e48128892744e1a4f220373f7da5b`.
[Required
CI](https://github.com/paperclipai/paperclip/actions/runs/42272042111)
passed (54 successful checks, three expected skips and the completed
neutral Paperclip Review check; none pending or failed). Greptile and
Paperclip Review both rated the change 5/5 with no remaining findings.
The addressed review thread is resolved. The first attempt's canary
runner communication loss and unrelated cold-import timeout are retained
as failed evidence; the unchanged cold-import suite passed 4/4 locally,
and only failed CI jobs were rerun successfully.

## Risks

Low risk. This changes test isolation only. The connection-management
suite no longer runs unrelated GitHub history scans. Dedicated
chat-channel integration tests still cover those scans. No authorization
check, assertion, deadline, or production behavior changes.

## Model Used

OpenAI GPT-6 family via Codex, with coding and tool use. The exact model
ID and context window are unavailable in this session's metadata.

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have searched GitHub for duplicate or related PRs and linked
them above
- [x] I have either (a) linked existing issues with `Fixes: #` / `Closes
#` / `Refs #` OR (b) described the issue in-PR following the relevant
issue template
- [x] I have not referenced internal/instance-local Paperclip issues or
links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip`
URLs)
- [x] My branch name describes the change (e.g. `docs/...`, `fix/...`)
and contains no internal Paperclip ticket id or instance-derived details
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [x] All Paperclip CI gates are green
- [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups
- [x] I will address all Greptile and reviewer comments before
requesting merge

---------

Co-authored-by: Paperclip <noreply@paperclip.ing>
2026-11-06 14:19:17 -06:00
DottaandClaude Opus 5.5 5a5bfe689f fix(heartbeat): finalize an accepted native result after a graceful shutdown (#19591)
## Thinking Path

> - Paperclip is the open source app people use to manage AI agents for
work
> - Native runner runs go through a durable coordinator row
(`native_run_finalizations`) that holds the controller's execution
lease, the accepted result, and the finalization phase
> - A graceful server shutdown (SIGTERM) drains running native runs: it
detaches the executor and hands the run to the next server boot
> - When SIGTERM lands after `run.result.accepted` / `run.terminal` but
before finalization, the drain did not release the execution lease,
because it only updated coordinator rows without a result
> - Startup restart recovery skips accepted results, and both the
finalization reconciler and the orphan reaper wait for an unexpired
coordinator lease (20 minutes for a local run). The run stayed `running`
and the task stayed `in_progress` with no Retry
> - This pull request makes the drain release the execution lease of an
accepted result too, so the next boot finalizes the durable result
> - The benefit is that a completed task finishes after a restart
instead of stalling silently

## Linked Issues or Issue Description

Refs #19525, #19530, #19513

**What happened?**
A restart-chaos wave sent SIGTERM to the server 0.75 s after a native
OpenCode run emitted `run.terminal` (result accepted, `runTerminalState:
succeeded`). The graceful drain listed the run in
`restartSuspendedRunIds`. On the next boot, startup recovery claimed
only another run. The accepted run stayed `running` for more than 10
minutes. Its task stayed `in_progress` with
`interruption.state=working`, and no Retry appeared.

**Expected behavior**
After a restart, a run whose result was accepted and whose terminal
state is known is finalized as succeeded, and its task is completed. It
must never stay silently `running`.

**Root cause**
`drainRunningRunsForShutdown`
(`server/src/services/heartbeat/recovery.ts`) updated the coordinator
only `where result_id is null`. For an accepted result, the update did
nothing, so the dead controller's execution lease
(`NATIVE_SESSION_EXECUTION_LEASE_TTL_MS`, 20 min) stayed valid. The
detached executor does not finalize (by design, it hands off to the next
controller). Then:
- `claimNativeRestartRecoveries` only claims rows with `result_id is
null`.
- `reconcileNativeFinalizations` only selects rows whose lease is null
or expired.
- The orphan reaper skips a native run with pending workspace
finalization or an unexpired controller lease, and defers to the lease
deadline. The 5-minute stale threshold is not involved.

**Steps to reproduce**
See the new regression test: accept a result through
`PaperclipControlPlanePort.completeRun` under a held 20-minute execution
lease, run the SIGTERM drain, then run startup recovery on a new
heartbeat service.

## What Changed

- `drainRunningRunsForShutdown` now releases the coordinator execution
lease (`leaseExpiresAt = now`) for an accepted result as well. It keeps
`recoveryState` unchanged for an accepted result, because the run needs
finalization, not a runner reattach. Rows without a result keep the old
behavior (`awaiting_runner_reattach`).
- A `native-finalizer:` lease on an accepted result is kept. That lease
belongs to a finalization that is in progress in the draining process,
and the shutdown waits for it.
- The drain event for an accepted result now says that the result was
released for finalization (`runnerDisposition:
awaiting_result_finalization`).
- New regression tests in
`server/src/__tests__/heartbeat-native-restart-suspension.test.ts`:
- An accepted terminal result under a held execution lease, then SIGTERM
drain, then next-boot recovery: the run becomes `succeeded`, the
coordinator becomes `committed`, the task becomes `done`, there is one
result row and one run, and no provider turn starts.
  - A `native-finalizer:` lease survives the drain unchanged.

## Verification

- Red before the fix: `cd server && pnpm exec vitest run
src/__tests__/heartbeat-native-restart-suspension.test.ts -t "accepted
terminal"` failed with `{ status: 'running', phase:
'workspace_finalizing' }` instead of `{ status: 'succeeded', phase:
'committed' }`.
- Green after the fix: the same file passes 5/5.
- Related suites pass: `src/services/heartbeat/recovery.test.ts`,
`src/services/legacy-controller-lease.test.ts`,
`src/services/native-runtime/native-runner-restart-recovery.integration.test.ts`
(80 passed, 14 skipped), and
`src/__tests__/heartbeat-process-recovery.test.ts` except one case.
- The one failing case in `heartbeat-process-recovery.test.ts`
("dispatches interrupted CLI input and cleans up early fixture exits
(true)") also fails on unchanged `origin/master`. It is not related to
this change.
- `server` typecheck (`tsc --noEmit`) passes.
- Restart-chaos replay of the original cell: in progress. Results follow
in a PR comment.

## Risks

- Low to medium. The change only affects the graceful SIGTERM drain of
native runs owned by this boot.
- A rolling deploy can overlap the old and new servers. The old process
detaches the executor before it releases the lease, so it does not
finalize the result. A finalizer that already started keeps its
`native-finalizer:` lease, so the new server cannot finalize the same
result at the same time.
- If a `native-finalizer:` lease is in progress and the process exits
before it finishes, that run still waits for the 5-minute finalizer
lease. This was already the behavior and is out of scope.
- No schema, API, or UI change.

## Model Used

- Claude Opus 5.5 (`claude-opus-5-5`), Anthropic, used through Claude
Code with tool use (shell, file edit, test runs). Extended reasoning was
used.

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have searched GitHub for duplicate or related PRs and linked
them above
- [x] I have either (a) linked existing issues with `Fixes: #` / `Closes
#` / `Refs #` OR (b) described the issue in-PR following the relevant
issue template
- [x] I have not referenced internal/instance-local Paperclip issues or
links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip`
URLs)
- [x] My branch name describes the change (e.g. `docs/...`, `fix/...`)
and contains no internal Paperclip ticket id or instance-derived details
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [x] All Paperclip CI gates are green
- [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups
- [x] I will address all Greptile and reviewer comments before
requesting merge

🤖 Generated with [Claude Code](https://claude.com/claude-code)

---------

Co-authored-by: Claude Opus 5.5 <noreply@anthropic.com>
2026-11-06 14:11:34 -06:00
DottaandPaperclip 124b2cd0ad fix(server): certify background deadlines for idle tenants (#19001)
## Thinking Path

> - Paperclip is the open source app people use to manage AI agents for
work.
> - Background services own future checks, retries, and recovery work.
> - An idle tenant can stop only when a durable wake covers its
remaining duties.
> - The current alarm catalog covers several domains but leaves these
owners blocked.
> - A saved future timestamp alone cannot prove that reconstruction or
admitted work has settled.
> - This pull request binds durable domain snapshots to the actual
registered worker revisions.
> - The tenant can hand off supported future duties and retain all
checks for uncertain or active work.

## Linked Issues or Issue Description

No matching public issue was found. Related work: [domain deadline
handoff #18656](https://github.com/paperclipai/paperclip/pull/18656),
[owned blocker diagnostics
#18632](https://github.com/paperclipai/paperclip/pull/18632), and
[completed history proof
#18646](https://github.com/paperclipai/paperclip/pull/18646). The
separate [native idle-session change
#18988](https://github.com/paperclipai/paperclip/pull/18988) covers
runtime retirement. [Far-future retry re-probes
#13534](https://github.com/paperclipai/paperclip/pull/13534) changes
recovery responsiveness after an upstream success; this change preserves
existing retry decisions.

**What happened?**

Future status-card, external-object, skill-sync, watchdog, retry, and
quota duties lacked complete owner-bound coverage in the idle deadline
proof. A completed quota task could also retain its monitor policy and
timestamp and remain blocked after the scheduler had disarmed it.

**Expected behavior**

A settled registered owner can hand off its exact supported future
deadline. Active work, dirty reconstruction, transaction uncertainty,
changed revisions, claims, unknown state, and unsupported duties keep
the tenant awake. Completed history retains its data and stops recurring
work when the owner has no remaining duty.

**Steps to reproduce**

1. Produce a supported future duty through its normal service.
2. Let the registered worker finish reconstruction and admitted work.
3. Request an owned idle report with the negotiated domain deadline
catalog.
4. Check the saved earliest deadline and generation before durable alarm
registration.
5. Stop and reconstruct the worker. Check that ordinary admission and
claims resume useful work once due.
6. Complete a quota task. Keep its saved policy and timestamp. Check
that linked unfinished work still blocks sleep and that settled history
does not.

**Paperclip version or commit**

The owned patch was qualified at
`699c8569fa34338dd75cdc5731381ec1e2efdb45`. Publication head
`491fac368ee72eaac8ae105d53e6bf6b305d8a6a` normally merges actual master
`039e0dad2c51c80251e1302a19c5566e039c357a`. All 43 owned files are
byte-identical. All 29 new upstream paths are preserved. The later
normal current-master integration is
`8c912e1ba4fc66397a7341ade59373af8075068f`, described separately below.

**Deployment mode**

Source checkout with real PostgreSQL 17 and a controlled local Node
process. No deployed alarm, tenant suspension, database suspension, or
fleet result is claimed.

## What Changed

- Add registered-worker reconciliation revisions and invalidate them on
stop.
- Keep status-card, external-object, and skill deadline interpretation
with their owners.
- Reuse the watchdog classifier against the supplied database snapshot.
- Validate the exact saved retry run and paired queued wake.
- Validate legacy quota source bindings and the current assignee or
reviewer policy.
- Preserve common issue scope, dependency, sibling, and state checks for
covered waits.
- Compose normalized owner snapshots within the existing bounded
deadline proof and recheck revisions after inspection.
- Bind actual service and worker instances from server startup. Missing
bindings preserve existing blockers.
- Retain completed quota policy and timestamps while independently
rejecting linked unfinished runs or wakes.
- Block unconsumed budget evaluation inputs through the owning queue
predicate. Accounting policy and settlement stay unchanged.
- Bind completed quota history through fixed-size UUID-array parameters,
preserve exact company/task/source associations, and guard external
references before the run-ID join.
- Batch watchdog subtrees and shared classifier facts without changing
the 64-query or two-second proof budget; preserve exact company pairing
for first-run evidence.
- Extend production-path regression controls and document supported
coverage and limits.

## Verification

Current integration head: `688abc6cac6016b9fb50e5832f81e2975ed5d49f`.
Fresh exact-head checks completed with **58 successes, three intentional
skips and one neutral review**, including aggregate `ci / verify`. The
complete current Greptile review is **5/5**. The complete current
Ponytail verdict is **Ship (4/5)**, with only optional cleanup of an
unused MCP proof input; both prior correctness findings are resolved.
All review threads and nested pages were inspected. The normal master
merges preserve the registered retry deadline owner and current startup
completion log after the same readiness await. The earlier focused
evidence below remains tied to its tested source revisions.


Current-master integration `8c912e1ba4fc66397a7341ade59373af8075068f`:

- Normally merge actual master
`46fb933b0155d183ce64a8bdc4950d1b58c926f6`. Every nonoverlapping tree
blob retains its owning parent across 14,044 paths. All 42 owner-only
files and 15 critical binding/proof/readiness files remain
byte-identical. Three automatic overlaps preserve the existing watchdog
binding, conservative unavailable-reader fallback and optional actual
owner arguments. The two scoped-deadline conflicts retain the entire
upstream resource-reservation/mid-pass admission/abort algorithm inside
the existing reconciliation revision/running/failure fence, with both
parent test sets.
- Actual TypeScript 7.0.2 server noEmit passed in 9.434 seconds, normal
source declaration layers in 12.102 seconds, and four selected
test/helper/config layers extending the actual CI configuration in 3.167
seconds. No compiler option weakening, heap override, donor declarations
or SDK replacement stub.
- Focused PG0 controls passed: 102 scheduler/proof/owner controls in
16.451 seconds, including all 21 scoped-deadline cases; 121 startup
controls; and all 107 unchanged instance-settings route cases in 6.456
seconds. The latter first hit a local prewire-guard
listener-registration race. Only the ignored guard was corrected to
register the same actual OS-bound server port immediately after native
listen returns. Closed, unknown, foreign, offhost and PG destinations
remain blocked. Original failure evidence is retained; product code and
assertions were unchanged.
- The exact current UI policy command now reports zero findings (0.362
seconds); its seven scanner controls pass. The earlier dependent PR used
an old scanner/source baseline under a newly enforcing trusted workflow
and reported 397 findings. Carrying the genuine current master resolves
that mismatch without editing unrelated UI sites or relaxing the gate.
- Every meaningful worker checked its executing PID/thread/preload hash
and matching receipt. PG0 controls opened no PostgreSQL sockets; all
owned processes exited. Original dependency-cache/DNS, ignored-harness
syntax/type and guard failures remain separate from product results.
- This is fresh semantic and focused runtime qualification, not a local
whole-repository or current-head PostgreSQL acceptance rerun. The
upstream workspace-busy parked-retry/terminal-holder notification path
remains unchanged by this merge and needs its separate current-graph
producer check. Historical six-case/scale results below stay tied to
their measured sources. A matching controlled default-cadence follow-up
is in #19191; no fresh current-head two-cycle or deployed suspension
claim follows from this merge.
- All 59 exact-head check contexts now pass (55 success, one neutral,
three intentional skips), plus the legacy security status. The complete
edited Greptile review is 5/5 for this exact commit, with all
root/nested pages inspected and no unresolved threads. Ponytail stopped
without completing its new turn; it supplied no new verdict or finding.
Prior actual findings remain addressed. Earlier scores/checks below
belong to their explicit earlier commits.


On frozen clean merged source `699c8569fa`:

- Real PostgreSQL acceptance: **6/6 passed**,83.483 seconds wall. Actual
retry producer creates the exact saved run/wake; stopped and
reconstructed owner resumes through current admission, one durable
start, real local process output and normal task completion. Includes
cancellation, drain arrival, retained quota history with queued-run/wake
negatives, watchdog review settlement and budget-input
empty/pending/consumed control using the actual owner.
- Affected coordinator, deadline, scoped-deadline, recovery and
composed-proof controls: **78/78 in five files passed**,32.114 seconds
wall, worker 1/no file parallelism.
- `pnpm exec tsc --noEmit -p server/tsconfig.json`: **passed**,17.467
seconds. Native TypeScript 7.0.2 and Node 24.22.2.
- PostgreSQL tests use one dedicated test database, matching
fixture/admin URLs, pool limit four, one worker, and no embedded
fallback. Every run recorded unchanged source hashes and a clean
checkout.
- The eight-second real-clock retry is a domain execution check. It is
below the Cloud minimum wake lead and is not a positive accepted hosted
sleep cycle.
- The completed quota-history product failure and original
fixture/protocol failures were preserved; the owning-reader fix passed a
real PostgreSQL red/green regression before the fresh merged six-case
pass.
- After runtime completion, the dedicated database had zero other
clients and no owned runtime processes. All three qualification process
PIDs exited. The coordinator independently audits and drops the
database.
- Comment-only cleanup has equal strict TypeScript parser ASTs across 15
files. The final lexical audit finds no added comments relative to
actual master. `git diff --check` passed.
- Earlier retry fixtures omitted responsible-user membership, advanced
JavaScript time past the real PostgreSQL lease clock, or produced stdout
without normal task completion. Corrected fixtures use real membership,
an eight-second real deadline, and ordinary task comment/completion. The
last case exposed legitimate disposition repair rather than duplicate
retry promotion.
- The quota and watchdog controls first ran before admitted work or the
existing 30-second reconstruction duty settled. The stronger tests
require an interim blocked report and then exact settled-owner proof.
Production deadlines were not changed. The separate
completed-quota-history defect was fixed in its reader and verified with
linked unfinished-run and wake controls.
- The status/object and skill owners reviewed the actual final startup,
route and post-backup bindings. Their domain source evidence carries
where token-equivalent. The master coordinator coalescing change was
reviewed separately. Historical domain PostgreSQL results are not
presented as fresh full-suite results on this head.

The later master merge adds retry predecessor cleanup checks under the
existing issue claim lock. The source audit confirms unchanged saved
deadlines and run/wake identities. The three actual retry
lifecycle/cancellation/drain cases passed on the batched candidate with
this parent (31.817 seconds). Those local dependency controls preceded
the current exact-head remote run. Native backup preservation and
TestOps changes from master are retained. No pass is inferred for
changed dependency behavior solely from unchanged owned files.

Review repair published as `643f1e7400`:

- The original reader returned `unknown` after seven actual watchdog
reviews settled across seven companies. The unchanged composed-report
regression passed after batching; the final reader passed in 61.841
seconds, including active queued-work and stopped-owner rejection.
- A separate two-company red/green control rejects terminal-run context
from another company as first-run grace evidence. Shared facts are
serialized once, with per-root IDs and review summaries.
- The affected recovery, proof and diagnostic unit controls passed 47/47
(14.575 seconds). Startup owner-contract fixtures passed 121/121 (10.589
seconds).
- Diagnostic PostgreSQL controls passed7/7 (12.406 seconds), including
the normal budget-input producer and its exact blocker reason. Initial
empty-state setup uses the same cleanup as per-case teardown when a
dedicated test database is reused.
- Actual repository `pnpm exec tsc --noEmit -p server/tsconfig.json`
passed 12.710 seconds with no heap override. Final source has no added
code comments; whitespace checks pass.
- The original query-budget failure, two-company discriminator, initial
cross-suite fixture failure and an interrupted incorrect local-driver
selector are retained separately. The interrupted run is not a pass.
Independent cleanup found zero owned clients or runtime processes.

Quota-scale repair published as `6696a37f8a`:

- The exact 10,000-row completed-history case reproduced
`MAX_PARAMETERS_EXCEEDED`:90,002 bound parameters exceeded the driver's
65,534 limit, and the composed report returned `unknown` despite settled
owners. Original failure and actual driver diagnostics are retained.
- Fixed pending-work queries use three typed UUID-array parameters plus
the result limit, keeping exact company/issue/source tuple bindings. The
primary run-ID column stays uncast; a guarded CASE validates the raw
external reference before conversion. The 10,000-row cap and
64-query/two-second proof budget are unchanged.
- The same 10,000-row composed-report case passed 18.860 seconds, with
unfinished run/wake rejection, malformed-reference safety and
conservative 10,001-row overflow. Its fixture derives retained history
from the actual quota producer and normal task completion, expands valid
persisted issue/source pairs, then starts the actual registered owners.
- The existing actual quota producer case passed 14.187 seconds,
including exact future deadline, retained completion history, unfinished
work, real foreign-company source references and noncanonical/malformed
references.
- Affected owner/proof controls passed 22/22 (26.444 seconds).
Production server noEmit passed 16.039 seconds.
- CI on 643 identified TS7034/TS7005 in the settled-watchdog fixture's
initially untyped collection. It is now explicitly typed. A separate
affected-entry semantic check extending the repository's actual
`server/src/__tests__/tsconfig.json` passed 15.093 seconds: six affected
tests, two owner files, ambient declarations and current imported
source, with unchanged strict/module/lib/path settings. The production
server config excludes that test directory and is not presented as
test-layer proof. No custom suppression or replacement SDK stub was
added.
- All runs were sequential with pool max 4, worker 1,
source/config/command hashes and cleared inherited
provider/LIVE/other-database variables. Cleanup found zero owned
database clients or local runtime processes. At prior head
`6696a37f8a5718cd0f79054969a0084462d41d47`, all required CI gates pass.
The exact-head inventory has 55 successes, one neutral review and three
intentional skips. Greptile is 5/5. The complete latest Ponytail verdict
confirms the quota finding is fixed; its only remaining note is optional
unused MCP proof state, not a behavior defect. All three review threads
are resolved. The earlier 643 result remains historical.

The repository-wide typecheck, tests, build and browser gates passed in
the prior `6696a37f8a5718cd0f79054969a0084462d41d47` CI run. The new
`8c912e1ba4fc66397a7341ade59373af8075068f` full CI also passes. They
were not run as a full local workspace command in the focused PostgreSQL
lease. Local evidence above uses bounded external databases and does not
claim embedded-cluster, live-provider or deployed-alarm qualification.

## Risks

- An unsupported or uncertain owner state must remain blocked. An
optimistic exemption could lose work while compute is stopped.
- Changes during reconstruction or inspection must invalidate the proof.
A memory-only timer is not durable alarm coverage.
- Current authorization, budgets, cancellation, accounting, and resource
ownership still apply on dispatch. The proof does not grant execution
authority.
- The supported writer model uses in-process transaction signals and
startup/resume reconstruction. Independent SQL writers and other
replicas need an explicit wake contract.
- Native, review, coalesced, and taskless retry variants remain
conservative until their owner cases qualify. Reviewer quota and hosted
alarm qualification remain open.
- The shared catalog remains opt-in. Legacy callers and missing owner
bindings retain their old blockers.

## Model Used

OpenAI `gpt-6.1-sol` was the configured model for the delegated service
implementations and reviews. OpenAI Codex, based on GPT-6, performed
managing review and integration. Both used repository tools and code
execution. The exact served backend snapshots and context-window limits
were not exposed.

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have searched GitHub for duplicate or related PRs and linked
them above
- [x] I have either (a) linked existing issues with `Fixes: #` / `Closes
#` / `Refs #` OR (b) described the issue in-PR following the relevant
issue template
- [x] I have not referenced internal/instance-local Paperclip issues or
links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip`
URLs)
- [x] My branch name describes the change and contains no internal
Paperclip ticket id
- [x] I have run tests locally and they pass on the final merged head
- [x] I have added or updated tests where applicable
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [x] All Paperclip CI gates are green — exact current-head run passes
- [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups —
complete current-head review and all paginated threads inspected
- [ ] I will address all Greptile and reviewer comments before
requesting merge

---------

Co-authored-by: Paperclip <noreply@paperclip.ing>
2026-11-06 13:48:55 -06:00
DottaandClaude Opus 5.5 694076245f fix(status-cards): inline query guidance in the compile task instead of an unprovisioned skill (#19554)
## Thinking Path

> - Paperclip is the open source app people use to manage AI agents for
work
> - Status cards let the board watch a slice of company work with a
prose prompt
> - A new card starts a compile task. The summarizer agent compiles the
prompt into search queries and writes the first summary.
> - The compile task told the agent to use the bundled
`status-card-query` skill. Nothing gives that skill to the built-in
Summarizer or to a per-card override agent.
> - The agent saw no assigned skills, got `runner_skill_not_assigned`,
and then searched the filesystem until the run deadline. It never wrote
the card query.
> - This pull request puts the query guidance directly in the compile
task, so the task names only things the run has.
> - The benefit is that any summarizer agent, on any model, can compile
and save the card query without a missing dependency.

## Linked Issues or Issue Description

**What happened?**
Creating a status card with a summarizer on a smaller model (for example
an OpenCode agent on a DeepSeek flash model) never finished. The compile
run reported no assigned skills, then spent its full budget looking for
`status-card-query`. No `PUT /api/status-cards/{id}/query` request was
sent, and the run hit its deadline. Stronger models sometimes worked
around the gap.

**Expected behavior**
The compile task contains everything the run needs. The agent writes the
query, reads the compiled scope, and writes the first summary.

**Steps to reproduce**
1. Enable status cards and configure a summarizer agent that does not
have the `status-card-query` skill (the default Summarizer only installs
`summarize-status`).
2. Create a status card.
3. Watch the compile run: it looks for the skill and does not write the
query.

## What Changed

- `server/src/services/status-cards.ts`: the compile task no longer says
"Use the bundled `status-card-query` skill". It now inlines the query
format (fields, allowed status and priority values from shared
constants, limits), the project and label lookup endpoints, an example
query body, and an explicit `GET /api/status-cards/{id}/dry-run` step
before the summary write.
- The example body uses a `text` fence, so the existing parser still
reads the `json` generation payload.
- New `server/src/__tests__/status-card-compile-prompt.test.ts`: asserts
that the compile task names no skill, contains the full query format and
write-back sequence, has an example that passes
`companySearchQuerySchema`, and keeps a parseable generation payload.

## Verification

- `cd server && npx vitest run
src/__tests__/status-card-compile-prompt.test.ts
src/__tests__/status-cards.test.ts
src/__tests__/status-card-evaluation-work.test.ts`: 3 files, 74 tests
pass.
- `npx tsc --noEmit -p server`: no errors in the changed files.
- `pnpm verify` selected 2224 test files. Most failed in this fresh
worktree because `@paperclipai/plugin-sdk` was not built yet (`Failed to
resolve entry for package "@paperclipai/plugin-sdk"`). After a build of
that package, the status-card files above pass. Required CI supplies the
broad coverage.

## Risks

- Low risk. The change is prompt text only. The write-back routes,
validators, and authorization do not change.
- The compile prompt is longer. The added text is a small, bounded
block.
- The `status-card-query` catalog skill still exists for agents that
author cards. The two texts can drift. The new test pins the prompt
contract.

## Model Used

- Claude Opus 5.5 (`claude-opus-5-5`), via Claude Code with tool use and
code execution.

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have searched GitHub for duplicate or related PRs and linked
them above
- [x] I have either (a) linked existing issues with `Fixes: #` / `Closes
#` / `Refs #` OR (b) described the issue in-PR following the relevant
issue template
- [x] I have not referenced internal/instance-local Paperclip issues or
links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip`
URLs)
- [x] My branch name describes the change (e.g. `docs/...`, `fix/...`)
and contains no internal Paperclip ticket id or instance-derived details
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [x] All Paperclip CI gates are green
- [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups
- [x] I will address all Greptile and reviewer comments before
requesting merge

🤖 Generated with [Claude Code](https://claude.com/claude-code)

---------

Co-authored-by: Claude Opus 5.5 <noreply@anthropic.com>
2026-11-06 13:48:45 -06:00
TonioandPaperclip c650f36007 fix(ui): refine agent profiles, identity editing, and list actions (#19535)
## Thinking Path

> - Paperclip is the open source app people use to manage AI agents for
work.
> - Agent pages expose identity files, reporting relationships, and
runtime settings.
> - Several controls had inconsistent spacing, weak navigation, or
misleading save feedback.
> - Empty task-row detail slots also reduced the title width before
truncation.
> - This pull request fixes those behaviors and aligns the reviewed UI
details.
> - The result is clearer agent editing and more readable task and agent
lists.

## Linked Issues or Issue Description

**What happened?**
Agent headers and file controls had inconsistent layout. The Identity
footer appeared without edits and did not provide clear save
confirmation. File names could wrap or omit the Markdown suffix. Task
titles truncated while empty detail slots occupied the row.

**Expected behavior**
Keep headers and actions aligned. Reveal the Identity footer only for
changes or save feedback. Use valid Markdown file names and actual file
dates. Let titles use available space.

**Steps to reproduce**
1. Open an agent overview, then its Identity tab.
2. Edit, undo, save, copy, and add an instruction file.
3. Resize the file panel and inspect file names and date labels.
4. Hover an agent row and inspect the Chat action and tooltip.
5. Open a task list with no recovery or external details and inspect
title width.

Related: #18716 is the prior UI bundle. #16934 and #14483 concern role
editing; this change does not add a role picker.

## What Changed

- Refine the character header, inline title and name editing, crown
position, runtime shortcut, and Chat/New task actions.
- Align profile metadata and manager selection; hide empty direct
reports.
- Refine Identity panels, Markdown filename validation, file-row hover,
truncation, Paper Mono typography, and copy feedback.
- Add a viewport-bound save footer with dirty, saving, and saved states.
Keep undo/discard separate from successful saves.
- Return recorded creation or modification dates for instruction files.
Reuse the active file transaction for metadata reads to avoid exhausting
the small connection pool.
- Reveal the agent-row Chat icon and label on hover, with a standard
delayed tooltip.
- Collapse empty task-row details so titles can use the available width.

## Verification

- Browser checks covered the local overview and Identity flows, narrow
file panels, successful file creation/update, undo/discard, header
navigation, row hover, tooltip delayed-open state, and full task titles.
- Focused instruction, save-footer, date, font-asset, and task-row tests
passed during development. After review, 55 file/instruction tests
passed, including cold restoration with recorded and unknown dates;
server typecheck and 18 immediate-save response tests also passed.
- Full `pnpm -r typecheck` and `pnpm build` passed after rebase onto
current master. The complete `pnpm test:run` attempt hit a 15-second
timeout in the existing chat Retry HTTP integration test; that case
passed in isolation (1 test passed). A second full attempt hit timeouts
in two other chat integration cases (GitHub webhook draining and
delivery retry budget); both passed in isolation without increasing
timeouts. All 55 remote checks passed on f31405a730, including the full
test matrix, build, typecheck, and final verification gate.
- `pnpm check:token-gates`, `node scripts/check-maps.mjs`, and `git diff
--check` passed on the submitted revision.

## Risks

- File dates are optional. Managed files require recorded dates because
restored projections have synthetic filesystem timestamps. External
files can use modification time; unknown dates are omitted.
- Save-footer timing depends on animation completion; reduced-motion and
failed-save paths have tests.
- Global Paper Mono typography can change text widths. Browser checks
covered the edited surfaces.
- No schema migration or new execution permissions are introduced.

## Model Used

OpenAI Codex, GPT-6, with repository tools, code execution, and browser
verification. The exact serving model ID and context-window size are not
exposed in this session.

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have searched GitHub for duplicate or related PRs and linked
them above
- [x] I have either (a) linked existing issues with `Fixes:` / `Closes:`
/ `Refs:` OR (b) described the issue in-PR following the relevant issue
template
- [x] I have not referenced internal/instance-local Paperclip issues or
links (only public GitHub references)
- [x] My branch name describes the change and contains no internal
Paperclip ticket id or instance-derived details
- [x] I have run the relevant tests locally and they pass; full-run
timeout limitations and successful isolated reruns are documented above
- [x] I have added or updated tests where applicable
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [x] All Paperclip CI gates are green
- [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups
- [x] I will address all Greptile and reviewer comments before
requesting merge

---------

Co-authored-by: Paperclip <noreply@paperclip.ing>
2026-11-06 11:14:56 -08:00
DottaandClaude Opus 5.5 705c3e955d fix(chat): show one onboarding question card when onboarding moves to agent chat (#19512)
## Thinking Path

> - Paperclip is the open source app people use to manage AI agents for
work
> - New users start with an onboarding first task. It has an opening
question card and, after "Interview me", an interview question card.
> - With the coordinator chat enabled, the agent's chat with the user
mirrors pending questions from that agent's direct tasks. The onboarding
task is a direct task.
> - A tester moved onboarding from the task into the chat. The agent
asked its interview in the chat. The chat then showed the chat card and
the mirrored onboarding-task card. Both were answerable.
> - This pull request expires the agent's pending onboarding-task
questions when the agent asks a question in its chat with that user.
> - The benefit is one interview card, answerable once, wherever
onboarding runs.

## Linked Issues or Issue Description

**What happened?**
Onboarding testing on Paperclip Cloud staging (Codex API path). The
steps were: enable the experimental chat and coordinator features, start
the "Interview me" onboarding task, switch to the agent chat, and ask
the chat to run the onboarding there. The chat agent started the
interview, and a duplicate question card appeared.

**Root cause**
`conversationDecisionReceiptsService.listPendingQuestions` projects
pending questions from direct tasks (created by the chat user, assigned
to the chat agent) into the chat. The onboarding first task matches. The
PAP-437 sibling-supersede rule in `issueThreadInteractionService.create`
only works on the same issue, and it is off for chat questions. So the
task's pending interview card and the new chat card both stayed pending
and visible in the chat.

**Expected behavior**
One interview question card in the chat, answerable once.

**Steps to reproduce**
1. Enable the experimental Agent Chat and coordinator features.
2. Create the onboarding first task and choose "Interview me" on its
opening card.
3. Open the chat with the same agent and ask it to run the onboarding
there instead of in the task.
4. The agent asks its interview in the chat. The chat shows two pending
question cards: its own card and the mirrored onboarding-task card.

**Paperclip version or commit**
`master` at 819420a60a (Paperclip Cloud staging build at the time of the
test).

**Deployment mode**
Paperclip Cloud (staging). The same logic runs in self-hosted mode.

## What Changed

- `server/src/services/issue-thread-interactions.ts`: when the chat
agent creates an `ask_user_questions` card in its chat with a user, the
server expires that agent's pending `ask_user_questions` cards on the
onboarding first task that the same user created and assigned to the
agent. The result is the existing `superseded_by_newer_interaction`
shape and points at the chat card. Pending chat publications for those
cards are cancelled and terminal publications are queued, the same as
the existing sibling supersede.
- The rule does not change questions on other direct tasks, handoff
tasks, or other chats. Confirmations and plan approvals on the
onboarding task are not changed.
- `server/src/__tests__/coordinator-handoff.test.ts`: a new red/green
test for the reported flow, and a control test that an ordinary
direct-task question stays pending when the agent asks something else in
chat.
- `server/src/onboarding-assets/first-task/README.md`: one paragraph
that documents the behavior.

## Verification

Red on `master` (819420a60a) with only the new tests added:

```
$ cd server && npx vitest run src/__tests__/coordinator-handoff.test.ts -t "onboarding interview|ordinary direct task"
 × moves a pending onboarding interview into the agent chat instead of showing two question cards
AssertionError: expected [ …(2) ] to deeply equal [ Array(1) ]
  [
    "26b1e6ae-e1e5-4c26-8475-ad7ad93a7754",
+   "2364fd68-a40f-42be-854d-89210bfc5811",
  ]
 ❯ src/__tests__/coordinator-handoff.test.ts:231:53
      Tests  1 failed | 1 passed | 23 skipped (25)
```

The chat showed its own interview card and the mirrored onboarding-task
interview card.

Green after the fix:

```
$ cd server && npx vitest run src/__tests__/coordinator-handoff.test.ts
 Test Files  1 passed (1)
      Tests  25 passed (25)
```

Neighbouring suites:

```
$ npx vitest run src/__tests__/issue-thread-interactions-service.test.ts src/__tests__/issue-onboarding-first-task-routes.test.ts src/__tests__/chat-interaction-publications.test.ts src/__tests__/coordinator-handoff.test.ts
 Test Files  4 passed (4)
      Tests  183 passed (183)
```

`tsc --noEmit -p server` shows no errors in the changed files. Other
errors in that local run come from the unbuilt
`@paperclipai/paperclip-runner` package. CI typecheck covers the full
build.

Not done: a live browser repro. Staging has no Codex company and no
agent chat with this flow. The evidence is the tester's notes and the
service-level test.

## Risks

- If a user ignores the onboarding card and the agent asks an unrelated
question in its chat, the onboarding task's pending question card
expires. The onboarding task stays open, and a message on the task still
wakes the agent. The chat already showed both cards to that user, so
this keeps one live ask from the agent.
- Race: if the onboarding task run posts its interview card after the
chat card, both stay pending. Agent Chat questions are intentionally not
expired by other cards, so this PR does not reverse the rule.
- No schema, API, or UI change.

## Model Used

- Claude Opus 5.5 (`claude-opus-5-5`), Anthropic, via Claude Code with
tool use and code execution.

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have searched GitHub for duplicate or related PRs and linked
them above
- [x] I have either (a) linked existing issues with `Fixes: #` / `Closes
#` / `Refs #` OR (b) described the issue in-PR following the relevant
issue template
- [x] I have not referenced internal/instance-local Paperclip issues or
links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip`
URLs)
- [x] My branch name describes the change (e.g. `docs/...`, `fix/...`)
and contains no internal Paperclip ticket id or instance-derived details
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [ ] All Paperclip CI gates are green
- [ ] Greptile is 5/5 with no open P2s, recommendations, or follow-ups
- [x] I will address all Greptile and reviewer comments before
requesting merge

🤖 Generated with [Claude Code](https://claude.com/claude-code)

---------

Co-authored-by: Claude Opus 5.5 <noreply@anthropic.com>
2026-11-06 13:10:45 -06:00
DottaandClaude Opus 5.5 fca1f1be4f fix(attention): keep replaced confirmations out of Needs you after the newest is settled (#19520)
## Thinking Path

> - Paperclip is the open source app people use to manage AI agents for
work
> - Needs you is the board inbox. It lists the decisions that wait for a
person.
> - Agents often ask for the same confirmation again on one task. Needs
you shows only the newest pending confirmation for each task.
> - When a person approved that newest card (for example in chat), or
the card expired, the older card that it replaced came back into Needs
you.
> - Manual onboarding tests reported this: decision cards that were
already approved in chat still showed in Needs you.
> - This pull request makes the newest answered or expired confirmation
also hide the older pending confirmations on the same task.
> - The benefit is that Needs you does not show stale cards after a
person answers the current one.

## Linked Issues or Issue Description

**What happened?**
A person approved a decision card in chat. Needs you still showed a
decision card for the same task. Expired cards also caused an older card
to show again.

**Steps to reproduce**
1. An agent creates a confirmation on a task. Then it creates a second
confirmation on the same task.
2. Needs you shows only the second card.
3. Approve the second card in chat (or let it expire).
4. The first card now shows in Needs you.

**Expected behavior**
Needs you shows no card for the task, because the newest ask is settled.

**Root cause**
`collapsePendingConfirmationsToNewest` compared only pending rows. Chat
cards use the same `issue_thread_interactions` row and the same accept
service, so there is no duplicate record. The server already drops
answered rows. The problem was the older pending row that the collapse
hid before.

## What Changed

- `server/src/services/attention-source-eligibility.ts`: the collapse
takes the newest settled (accepted, rejected, answered, expired)
ordinary confirmation for each issue. Older pending ordinary
confirmations stay hidden. A new `loadNewestSettledConfirmationAt`
helper reads that value with one grouped query.
- Cancelled and failed replacements do not settle the ask, so the older
card returns (the existing retention test keeps this behavior).
- Tool-action confirmations and quality-review confirmations are
excluded from the settled check. A settled tool action never hides a
different pending tool action.
- `server/src/services/attention.ts` and
`server/src/services/attention-retention.ts` use the new input, so the
feed and the retention worker agree.
- Review follow-up: the summary and task-index payload keeps
`toolAction` and `secretProposal`. A settled card only hides older asks
addressed to the same recipient. Tool actions, secret proposals and app
connections (`connectionAuthorization`) form one governed set. They
match the set the other confirmation readers use. A settled governed
card never settles an ordinary ask, and a pending governed card is never
hidden.
- `server/src/__tests__/attention-service.test.ts`: new tests for
"approved from chat", "rejected from chat", "expired", a re-ask after a
settled card, another recipient, a settled secret proposal, tool actions
in `list()`, and tool actions in `summary()`/`taskIndex()`. The tests
use two agents, because the service already expires a same-agent re-ask
at creation.

## Verification

Red on `master` (819420a60a), before the code change:

```
 RUN  v5.0.3 /Users/dotta/paperclipai/paperclip/.claude/worktrees/fix-n10-stale-needs-you-cards-47c895/server
 ❯ src/__tests__/attention-service.test.ts (36 tests | 2 failed | 34 skipped) 14165ms
   ❯ attention service (36)
     × does not resurface an older confirmation once the newest one is approved from chat  3502ms
     × does not resurface an older confirmation once the newest one is expired  2097ms
⎯⎯⎯⎯⎯⎯⎯ Failed Tests 2 ⎯⎯⎯⎯⎯⎯⎯
 FAIL  src/__tests__/attention-service.test.ts > attention service > does not resurface an older confirmation once the newest one is approved from chat 
AssertionError: expected [ Array(1) ] to deeply equal []
- Expected
+ Received
- []
+ [
+   "a1f2f085-e4b2-42f1-ac3c-71d85f6e164c",
+ ]
 ❯ src/__tests__/attention-service.test.ts:1609:32
    1607|     }
    1608|
    1609|     expect(await pendingIds()).toEqual([]);
       |                                ^
    1610|   });
    1611|
⎯⎯⎯⎯⎯⎯⎯⎯⎯⎯⎯⎯⎯⎯⎯⎯⎯⎯⎯⎯⎯⎯⎯⎯[1/2]⎯
 FAIL  src/__tests__/attention-service.test.ts > attention service > does not resurface an older confirmation once the newest one is expired 
AssertionError: expected [ Array(1) ] to deeply equal []
- Expected
+ Received
- []
+ [
+   "8c8d01ad-1084-47b2-927a-24d18529a9a6",
+ ]
```

Green after the change (same tests):

```
$ npx vitest run src/__tests__/attention-service.test.ts -t "resurface an older confirmation|tool-action approval"
 ✓ does not resurface an older confirmation once the newest one is approved from chat
 ✓ does not resurface an older confirmation once the newest one is expired
 ✓ keeps a pending tool-action approval visible after a newer tool action is settled
```

Review follow-up red (on ebe8e0c0ae, before the follow-up code change):

```
 × keeps a pending tool-action approval in the summary and task index after a newer ordinary confirmation is settled
 × does not let another recipient's settled confirmation hide this recipient's pending one
 × does not let a settled secret proposal hide an older ordinary confirmation
AssertionError: expected [] to include '4c636383-…'
AssertionError: expected [] to deeply equal [ Array(1) ]
```

All three pass after 9245bd7b17.

Second review round red (before a36923c7fc):

```
 × does not let a settled app connection hide an older ordinary confirmation
AssertionError: expected [] to deeply equal [ Array(1) ]
```

It passes after a36923c7fc.

Neighbouring suites (attention-service, attention-retention-work,
issue-review-attention, issue-blocker-attention):

```
      Tests  125 passed (125)
 Test Files  4 passed (4)
```

Staging check (read-only): the ONB staging company had one pending Needs
you item, on a task with no newer card. Staging has no Codex company, so
I could not reproduce the Codex path there.

## Risks

- Low risk. The change is read-only and adds one grouped query when
pending confirmations exist.
- Older ordinary confirmations from the same agent were already expired
at creation. This change affects asks from different agents or users on
the same task.
- The service already expires an older ordinary confirmation from the
same agent at creation. This change affects asks from different agents
or users on the same task.
- Behavior change: an older ordinary confirmation that is still pending
stays out of Needs you after a newer one is answered or expired. It
stays visible in the task thread.
- Not changed: the live-update listener does not match
`issue.interaction.withdrawn` or `issue.interaction_cancelled`. Those
cards can stay in the client cache until the next refetch.

## Model Used

- Anthropic Claude Opus 5.5 (`claude-opus-5-5`) in Claude Code, with
tool use and code execution.

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have searched GitHub for duplicate or related PRs and linked
them above
- [x] I have either (a) linked existing issues with `Fixes: #` / `Closes
#` / `Refs #` OR (b) described the issue in-PR following the relevant
issue template
- [x] I have not referenced internal/instance-local Paperclip issues or
links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip`
URLs)
- [x] My branch name describes the change (e.g. `docs/...`, `fix/...`)
and contains no internal Paperclip ticket id or instance-derived details
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [ ] All Paperclip CI gates are green
- [ ] Greptile is 5/5 with no open P2s, recommendations, or follow-ups
- [x] I will address all Greptile and reviewer comments before
requesting merge

🤖 Generated with [Claude Code](https://claude.com/claude-code)

---------

Co-authored-by: Claude Opus 5.5 <noreply@anthropic.com>
2026-11-06 13:10:26 -06:00
Dotta 65aee998a3 fix(server): settle empty environment cleanup notifications (#19316)
## Thinking Path

> - Paperclip is the open source app people use to manage AI agents for
work.
> - Environment workers retain cleanup duties and retry them safely.
> - A metadata change can notify the worker without adding cleanup debt.
> - The pending-cleanup worker kept a work hold during its thirty-second
spacing window even when its owner reported no debt.
> - Historical cleanup already checks that condition without advancing a
provider sweep.
> - This PR applies the same owner check to pending cleanup and
preserves later notifications.
> - An empty notification can settle while real cleanup and uncertain
work still block sleep.

## Linked Issues or Issue Description

Refs #18646. That change covers empty historical-cleanup notifications.
This follow-up covers the pending-cleanup queue. Related runtime work:
#18988.

A search of open and closed PRs and issues found no duplicate
pending-queue fix. This repairs an existing worker under the roadmap's
Cloud deployment work.

**What happened?**

A normal metadata update on a released lease left one tracked work
intent and a scheduled pass. The actual cleanup deadline was null before
and after the update. The worker kept the hold until its spacing window
ended.

**Expected behavior**

The worker can clear an empty notification through its existing owner
predicate after a normal sweep and deadline read complete. It must
retain new debt, unresolved transactions, failed sweeps, failed reads
and later notifications. Provider sweep spacing and cleanup retry
deadlines must stay unchanged.

**Steps to reproduce**

1. Create and release a fixture cleanup lease through the normal
services.
2. Start the registered worker and confirm that its cleanup deadline is
null.
3. Change the released lease's metadata before the thirty-second spacing
window ends.
4. Run the new test. The original worker keeps an active intent even
though eligibility remains empty.

**Paperclip version or commit**

Candidate: `69aaee95cd73322a37e0270354d4a06bf5512ba7`. It normally
merges actual master `cd3832d2357eab481a861331ba1bc944a0b951f4`. The
focused retry repair follows the original two-file fix. Every other tree
blob still matches that master. The diff has two files.

**Deployment mode**

Source checkout with external PostgreSQL 17 and controlled coordinator
time. No deployed host or database suspension result is claimed.

## What Changed

- Apply the existing cheap deadline check to both registered cleanup
queues during provider spacing.
- Clear only the captured notification generation when the owner returns
no deadline and the latest normal sweep completed successfully.
- Invalidate that coverage before every full sweep. Startup and later
sweep failures keep their existing retry even if a metadata notification
has no database deadline.
- Add real PostgreSQL controls for empty metadata changes, concurrent
debt, unresolved transactions, failed reads through drain/resume, and
unread-spool recovery after startup and later sweep failures.
- Retain the original provider sweep, retry, deferred-buffer, creation,
startup, historical and shutdown controls.

## Verification

**Real PostgreSQL red/green qualification passed.** The original
empty-notification counterfactual failed at active work one, expected
zero, after actual null eligibility reads (16.706s). Review then found a
missing failed-sweep combination. Two additional cases using the real
malformed spool and ordinary metadata notifications reproduced lost
retries on the earlier published head, both at the intended pending
predicate (42.144s). One case fails at startup; the other first
completes a successful sweep, then fails a later sweep. Failed fixtures
and original logs remain retained.

At measured source `1ccd227c51e03ab4306d7cb85cf81efb0e3d3678`, all **29
owner cases passed in 113.061s**, without filters or skips. The tests
repair the actual spool, recover the ordinary cleanup lease, perform
provider cleanup once, preserve the later-sweep backoff, and return to
quiet. Normal migrations used a fresh owned external database; each pool
was capped at four with one worker. The first test-fixture attempt
accidentally replaced the real spool driver; that setup failure is
preserved separately and was corrected before the counterfactual. No
final cleanup result or receipt was seeded.

Run the full owner suite against a fresh, owned external test database
with normal migrations applied:

```sh
pnpm --filter @paperclipai/server exec vitest run src/__tests__/environment-cleanup-work.test.ts --maxWorkers=1 --no-file-parallelism
```

Set `PAPERCLIP_ENVIRONMENT_CLEANUP_TEST_DATABASE_URL` to that fixture.
Local qualification uses one worker and a pool of four.

Current native TypeScript checks passed: normal production declaration
layers (44.127s) and the affected test entry using the repository's
actual CI options and references (3.922s). Own dependency builds passed.
A frozen install first found stale upstream ACPX patch metadata;
normally carrying #19294 corrected the hash references for the same
package version. No lock policy was relaxed.

Full local workspace typecheck, tests and build were not run in this
bounded external-PG lease. Fresh checks on the current head
`69aaee95cd73322a37e0270354d4a06bf5512ba7` completed with **53
successes, one neutral Pony review and two skips**, with no pending or
failed gates. Its [PR
workflow](https://github.com/paperclipai/paperclip/actions/runs/42104787089),
aggregate verification and commitperclip review succeeded. The complete
latest edited Greptile and Pony summaries both gave **5/5**. Both review
threads are resolved, and all root and nested thread pages were
inspected.

The current head only removes four changed code-comment lines to follow
CONTRIBUTING.md. Its emitted JavaScript is byte-identical to the
measured parent `1ccd227c51e03ab4306d7cb85cf81efb0e3d3678`; tests,
configuration and dependencies are unchanged. The local 29-case evidence
therefore carries to this head without a duplicate local run. The remote
results above are fresh for the current head.
On the earlier head, Runner CI failed an omitted-context
checkpoint-settlement case. The fresh Runner job on this head passed
without a rerun. The original failure logs are preserved and its cause
remains unproven; current success is recovery evidence, not a causal
explanation.

The recorded test and migration command PIDs were reaped; an independent
audit verifies zero owned database clients before normal cleanup. Failed
fixtures remain retained. The process audit covers recorded command
PIDs, not an exhaustive history of child processes.

The long quiet assertion uses controlled coordinator time and actual SQL
counters. It does not prove a real twenty-minute quiet window, provider
behavior or deployed suspension.

## Risks

The empty read must not erase a notification that arrives while it runs.
The captured generation and transaction controls preserve that boundary.
An unknown or failed read keeps work pending. Empty deadline rows cannot
cover a failed sweep or an unread local spool; only a successful normal
sweep and deadline read establish that coverage. No cleanup row,
resource claim, provider action, authorization rule, sweep spacing or
retry deadline is removed.

## Model Used

OpenAI `gpt-6.1-sol` produced the delegated regression tests and source
review. OpenAI Codex, based on GPT-6, implemented the small worker
change and managed integration and verification. Both used repository
tools and code execution. Exact served backend revisions and context
limits were not exposed.

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have searched GitHub for duplicate or related PRs and linked
them above
- [x] I have either linked an existing public issue or described the
issue using the issue template
- [x] I have not referenced internal or instance-local Paperclip issues
or links
- [x] My branch name describes the change and contains no internal issue
ID
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [x] I have checked that no documentation change is needed for this
internal worker fix
- [x] I have considered and documented risks
- [x] All Paperclip CI gates are green
- [x] Greptile is 5/5 with no open findings
- [x] I will address all reviewer comments before requesting merge
2026-11-06 13:04:40 -06:00
DottaandClaude Opus 5.5 c6eecac1e0 fix(heartbeat): keep a shutdown-suspended native recovery for the next boot (#19530)
## Thinking Path

> - Paperclip is the open source app people use to manage AI agents for
work
> - The Runner Full-Stack E2E workflow tests the Runner in Daytona
sandboxes from a signed, content-addressed image
> - Every change to an audited Runner input needs a new image before a
Daytona cell can test it
> - The image job took 10 to 16.5 minutes today, and a restart chaos
campaign waits on it after each runner-side fix
> - Measurement shows two serial waits: a full Rust dependency compile
(about 5 of 6.6 minutes) and a 3.5 to 4 minute download of cached base
layers that starts only after the builder stages finish
> - There is also no way to build only the image: every dispatch reaches
a paid gate that the operator must reject
> - This pull request removes both serial waits and adds an `image_only`
dispatch input
> - The benefit is a shorter fix-to-Daytona-test loop, with every image
security check unchanged

## Linked Issues or Issue Description

**What happened?**

The `Publish verified Daytona image` job is on the critical path of the
control-plane restart chaos campaign. Builds today took 16.5 min (run
42240434011), 15 min (42253920727), 10.5 min (42259118276) and 16 min
(42265637650). Run 42264611573 failed: its RunsOn runner lost
communication with GitHub 7.6 minutes into the build step, during the
Rust compile. GitHub has no log for that job.

**Expected behavior**

A Runner source change should not recompile the locked third-party Rust
graph. Cached image layers should download while the builder stages
compile. An operator should be able to publish only the image, without a
paid gate.

**Steps to reproduce**

Read the BuildKit timeline in the logs of job 127970125495 (run
42240434011). See the stage table below.

## What Changed

- `docker/daytona-runner/Dockerfile`: compile the locked Rust dependency
graph in its own layer against placeholder targets. The layer depends
only on `Cargo.toml`, `Cargo.lock` and the crate manifest. The step
deletes the placeholder outputs and fingerprints, so the next step
always compiles the real Runner sources. The final stage still receives
only the stripped executable.
- `docker/daytona-runner/Dockerfile`: move the content-ID /
source-revision check above the two `COPY --from` steps. It does not
depend on either builder stage, so BuildKit now downloads the cached
base and CLI layers in parallel with the compile. Both copies use `COPY
--link`.
- `.github/workflows/runner-full-stack-e2e.yml`: add the boolean
`image_only` dispatch input. `authorize`, `target_lock`, `catalog` and
`daytona_image` run unchanged. Every other campaign job gets `&&
inputs.image_only != true`. `authorize` rejects `image_only` together
with TestOps inputs.
- `tests/runner-e2e/workflow-image-only.test.ts` (new): pin the job
classification, the top-level guard on each campaign job, the guard on
every protected environment, and the TestOps rejection.
- `tests/runner-e2e/README.md`: document the layer layout and the
`image_only` command.

## Verification

Measured on the same RunsOn `m7i-flex.xlarge` (4 vCPU, 16 GiB, native
x64) runner class. "Before" is master job 127970125495 (run
42240434011). "After (cold)" is this branch, job 128077687214 (run
42271236140), with no dependency layer in the registry cache yet. Its
paid gate was rejected.

| Stage | Before | After (cold dependency cache) |
|---|---|---|
| Whole image job | 16.5 min | **11.6 min** |
| Rust dependency graph | 311 s (inside one 399 s step) | 395 s (own
layer; reused from cache after a master build) |
| `paperclip-runner-core` compile | ~87 s | 65 s |
| Cached base and CLI layer download | 236 s, **after** cargo finished |
257 s, **in parallel** with cargo |
| Copy runnerd + provider pack | 20 s + 50 s | 9 s (`--link`) |
| Provider pack stage | 143 s (parallel) | 152 s (parallel) |
| Export + push | 82 s + 10 s | 81 s + 11 s |
| Dependency layer size | n/a | `target` 852 MB + registry 333 MB
(builder stage only) |

With a warm dependency cache, a Runner source change compiles only the
65 s crate step. The critical path then becomes the ~4 min cached-layer
download or the provider pack. The expected job time is about 7 to 8
min. I measure this after merge with an `image_only` dispatch (master
first, to write the cache, then a Rust-only branch change).

Disk: the instance starts with 38.76 GiB free. The dependency layer adds
about 1.2 GB uncompressed to builder storage. The final image does not
change.


- `vitest run tests/runner-e2e/workflow-image-only.test.ts
tests/runner-e2e/workflow-security.test.ts
tests/runner-e2e/daytona-image.test.ts`: the new test and all image
tests pass. Three tests in `workflow-security.test.ts` (`gates every
provider-secret job with stable actor IDs`, `keeps provider credentials
inside explicitly gated paid workflows`, `isolates private archive trust
from workflows that execute target-branch code`) fail on `origin/master`
without this change, because of `chat-catalog-testops-case.yml`. This
pull request does not change them.
- `node --test tests/runner-e2e/product-regression-testops.test.mjs`:
15/15 pass.
- No local Docker build. The Dockerfile is measured with a
branch-targeted CI dispatch whose paid gate was rejected.

## Risks

- The dependency layer keeps the Rust `target` and registry trees in a
builder-stage layer, and default-branch builds export it to the registry
cache. This adds builder disk and cache upload when `Cargo.lock`
changes. The build prints the size (`du -sk target
/usr/local/cargo/registry`).
- The dependency cache helps only after a default-branch build writes
it. Branch builds read it but never write it. This is the existing cache
policy.
- `image_only` changes the workflow, so it works only after merge to
master.
- No check is removed. Lockfile verification, cosign sign and verify,
the anonymous pull check, the provider-pack manifest match, the
default-branch-only cache write and the actor allowlist are unchanged.

## Model Used

- Claude Opus 5.5 (`claude-opus-5-5`), Anthropic, through Claude Code
with tool use (shell, GitHub CLI). Extended reasoning on.

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have searched GitHub for duplicate or related PRs and linked
them above
- [x] I have either (a) linked existing issues with `Fixes: #` / `Closes
#` / `Refs #` OR (b) described the issue in-PR following the relevant
issue template
- [x] I have not referenced internal/instance-local Paperclip issues or
links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip`
URLs)
- [x] My branch name describes the change (e.g. `docs/...`, `fix/...`)
and contains no internal Paperclip ticket id or instance-derived details
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [x] All Paperclip CI gates are green
- [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups
- [x] I will address all Greptile and reviewer comments before
requesting merge

🤖 Generated with [Claude Code](https://claude.com/claude-code)

---------

Co-authored-by: Claude Opus 5.5 <noreply@anthropic.com>
2026-11-06 13:01:16 -06:00
Nicky LeachandClaude Opus 5.5 1206373a95 fix(environments): close Apex findings on managed plugin environments (#19526)
## Thinking Path

> - Paperclip is the open source app people use to manage AI agents for
work
> - A managed instance gets its instance-level environments from the
`PAPERCLIP_MANAGED_CONFIG` document, and #19508 added plugin environment
entries to it
> - Greptile's Apex review of #19508 arrived after it merged, with three
findings
> - A credential inside an array nested in an array passed the secret
check and the response redaction
> - Recovery of an archived environment listened on one worker handle,
which a restart replaces, and its attempts were not tracked through idle
checks and shutdown
> - This pull request closes all three findings
> - The benefit is that credentials never pass the check, an environment
comes back after any worker restart, and shutdown never cuts off a
recovery write

## Linked Issues or Issue Description

Refs #19508 (the Apex findings this pull request fixes)

**Subsystem affected**
Server environments: the managed-config parser, the environment routes'
response floor, the managed environment bootstrap, and the plugin worker
manager.

**Problem or motivation**
Greptile's Apex review of #19508 found three problems. (1)
`findSecretLikeConfigKey` and `redactSecretLikeConfigKeys` skip array
elements that are arrays, so `{"groups":[[{"apiToken":"..."}]]}` passes
the boot check and is echoed to restricted readers. (2) Recovery
subscribes to `ready` on one worker handle. A restart such as a settings
save replaces that handle, so the new worker's `ready` never reaches the
listener, and the environment stays archived. (3) A recovery attempt is
fire-and-forget. The worker manager's work token ends when the worker
replies, but the database write continues, so an idle check or the
database shutdown can overlap it.

**Proposed solution**
Walk arrays at any depth in both functions. Add a manager-wide
`onWorkerReady` subscription and use it for recovery. Run every recovery
attempt through a controller that tracks it as idle work and that
shutdown stops and awaits before the database closes.

**Alternatives considered**
Re-subscribing on each new handle after a restart. That needs a hook in
every restart path. The manager-wide subscription covers all of them in
one place.

**Roadmap alignment**
This only fixes code that #19508 added or touched. It adds no product
surface.

## What Changed

- `server/src/services/managed-config.ts`: `findSecretLikeConfigKey`
walks arrays at any depth (new `findSecretLikeConfigKeyInValue`). This
covers sandbox `config` and plugin `driverConfig`.
- `server/src/routes/environments.ts`: `redactSecretLikeConfigKeys`
walks arrays at any depth (new `redactSecretLikeConfigValue`).
- `server/src/services/plugin-worker-manager.ts`: new optional
`onWorkerReady(listener)` on `PluginWorkerManager`. It fires on every
worker `ready`, including a replacement handle from a restart. A
listener error is logged and does not affect the worker.
- `server/src/services/managed-environments.ts`:
- Sandbox and plugin recovery subscribe through `subscribeWorkerReady`.
It prefers `onWorkerReady` and falls back to the handle when the manager
has no such method.
- New `createManagedEnvironmentRecovery()` controller. Each attempt runs
inside `trackIdleWork` for its whole duration. `stop()` removes every
`ready` subscription, refuses new attempts, and awaits unfinished ones.
- `server/src/index.ts`: creates the controller, passes it to
`applyManagedEnvironments`, and awaits `stop()` during shutdown, after
the delivery workers stop and before the application teardown and
database close.

## Verification

- `cd server && npx vitest run src/__tests__/managed-config.test.ts`: a
secret-like key in an array nested in an array refuses boot, for plugin
`driverConfig` and sandbox `config`.
- `npx vitest run src/__tests__/environment-routes.test.ts`: a
nested-array credential is removed from the response, and other nested
values stay.
- `npx vitest run
src/services/managed-environments-plugin-entries.test.ts`:
- With `onWorkerReady`, recovery never consults the handle. It ignores
another plugin's `ready`, re-ensures on this plugin's `ready`, and then
unsubscribes.
- An attempt counts in `idleWorkSnapshot()` until its ensure settles.
`stop()` unsubscribes, waits for the unfinished attempt, and later
`ready` events start nothing.
- `npx vitest run src/services/managed-environments.test.ts
src/__tests__/managed-plugin-environments.test.ts`: pass.
- `pnpm --filter @paperclipai/server typecheck` passes.
- I did not run the full `pnpm test:run`, `pnpm -r typecheck` or `pnpm
build`. CI covers them.

## Risks

- The redaction now also walks nested arrays in sandbox config
responses. Only credential-shaped keys are removed; other values are
unchanged.
- The boot check now refuses a document that hides a secret-like key in
a nested array. A valid document has no such key.
- `onWorkerReady` is optional, so other `PluginWorkerManager`
implementations and test fakes keep working.
- Shutdown now waits for an unfinished recovery attempt. An attempt is
one worker call plus one short transaction.

> For core feature work, check [`ROADMAP.md`](ROADMAP.md) first and
discuss it in `#dev` before opening the PR. Feature PRs that overlap
with planned core work may need to be redirected — check the roadmap
first. See `CONTRIBUTING.md`.

## Model Used

- Claude Opus 5.5 (`claude-opus-5-5`), Anthropic, through Claude Code
with tool use (file edits, shell, test runs).

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have searched GitHub for duplicate or related PRs and linked
them above
- [x] I have either (a) linked existing issues with `Fixes: #` / `Closes
#` / `Refs #` OR (b) described the issue in-PR following the relevant
issue template
- [x] I have not referenced internal/instance-local Paperclip issues or
links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip`
URLs)
- [x] My branch name describes the change (e.g. `docs/...`, `fix/...`)
and contains no internal Paperclip ticket id or instance-derived details
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [x] All Paperclip CI gates are green
- [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups
- [x] I will address all Greptile and reviewer comments before
requesting merge

🤖 Generated with [Claude Code](https://claude.com/claude-code)

---------

Co-authored-by: Claude Opus 5.5 <noreply@anthropic.com>
2026-11-06 10:35:57 -08:00
DottaandPaperclip 5d25117ffa fix(heartbeat): recover deferred dependency completion wakes (#19457)
## Thinking Path

> - Paperclip is the open source app people use to manage AI agents for
work.
> - Tasks wait for other tasks through saved dependency edges and wake
requests.
> - A dependency can finish while its assignee answers a question about
the blocked task.
> - Paperclip saves the completion wake behind that active turn.
> - Recovery did not find that saved wake unless it also contained a
comment or an interaction response.
> - This pull request restores that wake through the existing release
and dispatch checks.
> - The task can then continue after the active turn and its cleanup
finish.

## Linked Issues or Issue Description

**What happened?**

A task stayed blocked after its dependency finished. The completion wake
was saved while an audit turn was active. The wake stayed deferred after
that turn ended. It had no comment or interaction response, so both
recovery queries and the input guard excluded it.

**Expected behavior**

Recover the saved dependency wake when the prior turn and its cleanup
finish. Start one dependency continuation under the current execution
rules.

**Steps to reproduce**

1. Run a question response on a dependency-blocked task.
2. Finish the dependency while the response is active.
3. Save the completion wake behind that response.
4. Finish the response and its environment cleanup, or restart the
workers.
5. Observe that the saved wake has no run.

**Paperclip version or commit**

Reproduced against `70d23612dd`. Rechecked against `2f35eb1080` with the
final regression fixture.

**Deployment mode**

Source checkout on Linux x64, Node 25.9.0, pnpm 9.15.4, and isolated
embedded PostgreSQL.

Related work: #16673 added recovery for saved messages. #17288 and
#16966 address assignment wakes after cleanup. This change covers
dependency completion receipts with no message.

## What Changed

- Include saved `issue_blockers_resolved` receipts in worker
reconstruction and stranded queue selection.
- Let these receipts pass the input guard without a comment or
interaction response.
- Use the existing release transaction and dispatch checks. Add no
timer, migration, or direct task status change.
- Add process-backed regression cases for restart, cleanup release,
cancellation, agent pause, pending cleanup, and unresolved blockers.
- Update the dependency wake recovery document.

- Share the dependency-wake payload predicate and SQL fragment across
reconstruction and stranded receipt admission, so these eligibility
checks have one owner.

## Verification

- The final regression fails on the base code: the receipt stays
`deferred_issue_execution` and has no successor. The same test passes
with the fix.
- Six focused cases pass. They use real PostgreSQL and a real process
adapter. They check saved output, one dependency continuation, clean
task locks, repeat recovery, and execution gates. They do not call a
model provider.
- Three nearby suites pass: 125 tests across queue wiring, dependency
scheduling, and dependency recovery.
- Final-head server layered typechecking passes with
`PAPERCLIP_TYPECHECK_LOW_MEMORY=1`. Whitespace and module boundary
checks pass. Two parallel checker attempts reached the sandbox memory
limit; the completed low-memory check covers all source and test layers.
- The full deferred-receipt suite passes: 45 tests. Combined with the
nearby suites, 170 local tests pass. These results cover head
`8f9d3aa6ac19a6d2532bd869eb8adda7cf122a5a`. Required CI remains in
progress.
- Local workspace typechecking and build stop at the Runner Rust step
because Cargo is absent. The full local test suite was not run. Required
CI must supply broad coverage.
- The hosted incident has not been recovered or deployed from this
branch.

- Review follow-up at `182385e9bc433adac06440997de7e4cfbf889a72`: normal
merge of master `0d03610d2f73b7cd799547e43929bb2303319024`; no conflict
or history rewrite. All 54 receipt/helper cases pass on macOS arm64,
Node 26.4.0, real embedded PostgreSQL and process adapters. The six
dependency continuation and safety cases also pass separately. Module
boundaries and whitespace checks pass. No assertion, timeout, execution
gate or retry policy changed for this extraction.
- Current shared, SDK and adapter-utils source builds pass. The first
broad local server typecheck read stale borrowed adapter declarations;
rebuilding them exposed nominal type duplication between the borrowed
workspace and this checkout. It is not counted as a server typecheck
pass. All 30 SDK and 169 adapter runtime JavaScript outputs match the
previously tested artifacts. Final revision
`182385e9bc433adac06440997de7e4cfbf889a72` now passes all 55 applicable
CI checks (three skipped, one neutral review), including clean-workspace
typecheck, build and broad tests. [CI
result](https://github.com/paperclipai/paperclip/actions/runs/42262173960).
Greptile and Paperclip review both give 5/5 with no open findings.

## Risks

- Recovery now considers a saved dependency receipt with no message.
Current ownership, source finalization, cleanup, pause, cancellation,
and dependency checks still control execution.
- The scan remains bounded and uses existing transaction notifications
and restart reconstruction. The integration checks verify that it
becomes quiet after settlement.

## Model Used

- OpenAI Codex, based on GPT-6. The exact provider model ID and context
size are not exposed in this session. Used reasoning, tool calls,
TypeScript edits, and test execution.

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have searched GitHub for duplicate or related PRs and linked
them above
- [x] I have either (a) linked existing issues with `Fixes: #` / `Closes
#` / `Refs #` OR (b) described the issue in-PR following the relevant
issue template
- [x] I have not referenced internal/instance-local Paperclip issues or
links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip`
URLs)
- [x] My branch name describes the change (e.g. `docs/...`, `fix/...`)
and contains no internal Paperclip ticket id or instance-derived details
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [x] All Paperclip CI gates are green
- [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups
- [x] I will address all Greptile and reviewer comments before
requesting merge

---------

Co-authored-by: Paperclip <noreply@paperclip.ing>
2026-11-06 11:49:38 -06:00
DottaandPaperclip e3fb4bc73a fix(native): recover saved listener startup failures (#19479)
## Thinking Path

> - Paperclip manages AI agents and their work.
> - Native recovery must preserve saved work and respect current task
authority.
> - A closed local API listener can stop startup before a provider
starts.
> - #19462 gives new failures a bounded bootstrap retry.
> - Older saved failures still have a generic terminal code and a
recovery hold.
> - This pull request verifies the old producer outcome and uses the
existing safe replacement path.
> - Eligible tasks continue once. Unknown provider outcomes and user
holds remain blocked.

## Linked Issues or Issue Description

Refs: #19462

**What happened?**

A restart can leave an old listener startup failure in
`terminal_failure` with `native_session_interrupted`. Startup recovery
does not claim it after #19462. A completed file recovery can also
retain its no-replay hold.

**Expected behavior**

Continue automatically when durable records prove that no provider
started, the source stopped, and the current files were saved. Keep the
existing attempt budget and normal admission checks.

**Steps to reproduce**

1. Close the actual API listener after a fresh native coordinator claim.
2. Persist the old executor's generic failure. Save the workspace and
confirm source termination.
3. Restart recovery. The baseline schedules no successor. The repair
schedules one successor after all receipts pass.

**Paperclip version or commit**

Baseline: `0252421d5c`. Old failure producer: `2f35eb1080`.

**Deployment mode**

Built from source. Local macOS arm64, Node 26.4.0, real embedded
PostgreSQL, independent filesystem execution. No external AI service is
used by the controlled acceptance.

## What Changed

- Recognize the exact saved local-listener guard through one proof
predicate shared by discovery and the locked transaction.
- Require a fresh first attempt, matching execution bindings, no prior
provider lineage, no provider events or tool calls, no checkpoint or
admission receipt, and no cancellation.
- Reuse current snapshot, exact stop, source block, attempt budget, and
successor idempotency checks.
- Wait for completed source file-recovery receipts. Retire only that
same source's verified preservation hold in the successor transaction.
- Bound discovery to 100 candidates per pass, keep completed history
quiet, and wake through existing transactional producer notifications.
- Retain retries after transient database and final ownership-proof
errors; advance the bounded cursor and force a rescan so a failing page
cannot hide later work.
- Let only the replacement duty discharge a proved-empty notification
during drain through its existing read-only readiness check, once per
notification generation. Keep real work and concurrent changes
outstanding without running replacement during drain.
- Wake replacement at canonical local-stop proof writes and the existing
dispatch eligibility boundary; these hints grant no new execution
authority.
- Add database regressions, scheduler quietness checks, real controller
handoff coverage, and an opt-in controlled Runner continuation.

## Verification

Final production head: `0df41b2fef2644195d1224d36984af3827da3e3b`.

Local environment: macOS arm64, Node 26.4.0, TypeScript 7.0.2, Vitest
5.0.3, frozen-lockfile dependencies. Tests execute freshly;
`--fsModuleCache` reuses only content-validated module transforms.

- Native safe replacement: 62/62 PASS on isolated PostgreSQL 17 (63.18
seconds), including clean per-suite database disposal. All 62 assertions
also passed on embedded PostgreSQL 18 beta, but its Darwin cleanup hook
timed out; that invocation is not counted as a pass. Docker's disk was
full, so the disposable PostgreSQL 17 data used a size-limited RAM
mount, with no host mounts. The owned container was removed afterward.
- Actual stopped-process producer suite: 31/31 PASS. A real exited child
produces the stop receipt, and its replacement notification settles only
after the outer transaction commits.
- Workspace and separate-process drain regressions: 33/33 PASS (75.90
seconds).
- Shared coordinator and execution-control lifecycle checks: 39/39 PASS
(16.43 seconds). Pending work, concurrent changes, cold startup,
shutdown, and passive drain boundaries remain covered.
- Actual suppressed Cloud routine/drain workflow: PASS (34.64 seconds),
using the unchanged test and timeouts. Its matching local RED reproduced
CI's 462-query, zero-pending-query, one-idle-hold timeout after an
admitted write committed during drain (69.46 seconds).
- Actual historical controller handoff: PASS (48.40 seconds). A separate
controller loads the original executor from `2f35eb1080`, writes its
generic listener failure, and exits. Recovery at the final head admits
exactly one successor. The real Rust Runner and controlled Codex process
complete governed `paperclip_finish`; attempt two commits and the saved
file remains intact. Only the child loads the old artifact, and both
isolated artifacts are restored afterward. Rust source subtree
`77961b70f177ec3c38d11abcaec92fd3d0e96ec0` matches the built binary. No
external AI service is used.
- Seven corrected existing fixtures pass: transactional stop-proof calls
(5 cases) and notification inventory (2 cases). Their earlier CI
failures exposed fixture calls outside the documented transaction and an
outdated expected queue set.
- Server typecheck: PASS.

Red/green proofs also cover the original saved failure on baseline
`0252421d5c` (zero successors instead of one), held-history quietness,
bounded forward scanning through 100 parked rows and concurrent wakes,
real snapshot/cleanup producer notifications, actual issue-row lock
timeout, and task/history eligibility notifications. An obsolete
prior-run question can be skipped to request another proof check; actual
skip while the task is paused or the source owns provider tool activity
schedules no successor.

The failed-page regression starts with 25 persistent verifier errors and
a healthy candidate 26. Baseline RED repeats the first page. Repair
GREEN advances the healthy candidate, revisits the original failures
after their fault clears, creates all 26 successors exactly once, and
becomes quiet.

Greptile is SUCCESS, 5/5 on the exact final head (2026-11-06 17:09:21
UTC). Final-head CI is GREEN: 56 successful checks, three intentional
skips, one neutral result, and no pending or failing checks. [Attempt
two and
results](https://github.com/paperclipai/paperclip/actions/runs/42258352876/attempts/2)
include passing build, typecheck, Rust, native server, package, browser
E2E, serialized server, general server/chat tests, and final
verification. Five jobs in the first attempt were interrupted together
at 17:13:12 UTC; the native-server log records an explicit runner
shutdown signal. The single infrastructure retry reran only those five
jobs and dependent verification, preserving the 49 successful checks on
the unchanged head. No timeout was weakened, and setup failures or
interrupted invocations are not counted as passes.

Focused commands from the repository root:

```sh
./server/node_modules/.bin/vitest run --project @paperclipai/server server/src/services/remote-workspaces.integration.test.ts server/src/services/native-runtime/native-runner-restart-preparation.integration.test.ts -t 'native safe-replacement decision|reconciles the drained remote backend' --fsModuleCache --reporter=dot
./server/node_modules/.bin/vitest run --project @paperclipai/server server/src/__tests__/execution-control-work.test.ts server/src/__tests__/delivery-work-coordinator.test.ts -t 'execution-control lifecycle|work coordinator' --fsModuleCache --reporter=dot
node node_modules/typescript/bin/tsc -p server/tsconfig.json --noEmit --pretty false
```

The historical acceptance sets `PAPERCLIP_TEST_HISTORICAL_LISTENER=1`
and uses an original-executor child artifact with a `try/finally`
restore. Normal regressions require no Rust binary.

## Risks

- Compatibility is deliberately limited to positively proved fresh
remote startup failures. Other old ambiguous failures remain held.
- Existing provider work, a changed task block, incomplete preservation,
or revoked authority must prevent execution. Normal retry admission
remains in control.
- This PR does not deploy the change or mutate a hosted task. Hosted
recovery still requires the repaired revision and all current proof
gates.

## Model Used

OpenAI GPT-6 through Codex, with reasoning, tool use, and code
execution. The exact backend model identifier and context window are not
exposed in this session.

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have searched GitHub for duplicate or related PRs and linked
them above
- [x] I have either (a) linked existing issues with `Fixes: #` / `Closes
#` / `Refs #` OR (b) described the issue in-PR following the relevant
issue template
- [x] I have not referenced internal/instance-local Paperclip issues or
links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip`
URLs)
- [x] My branch name describes the change (e.g. `docs/...`, `fix/...`)
and contains no internal Paperclip ticket id or instance-derived details
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [x] All Paperclip CI gates are green
- [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups
- [x] I will address all Greptile and reviewer comments before
requesting merge

---------

Co-authored-by: Paperclip <noreply@paperclip.ing>
2026-11-06 11:49:28 -06:00
Nicky LeachandClaude Opus 5.5 98ebeefbc9 feat(environments): let managed config declare plugin environments (#19508)
## Thinking Path

> - Paperclip is the open source app people use to manage AI agents for
work
> - A managed instance gets its instance-level environments from the
`PAPERCLIP_MANAGED_CONFIG` document
> - #19490 added the plugin environment rows, their marker index and
write floor, but nothing creates them yet
> - The managed config still accepts only one sandbox entry, so a
managed instance cannot get a plugin-provided environment without manual
setup
> - This pull request lets the managed config declare plugin entries
beside the sandbox entry, and provisions one locked row for each at boot
> - The benefit is that a managed instance gets its plugin environments
with no manual setup, and the rows recover by themselves when their
plugin restarts

## Linked Issues or Issue Description

Refs #19490 (the plugin environment rows this pull request provisions)

**Subsystem affected**
Server environments: the managed-config parser, the managed environment
bootstrap, and the environment routes' write floor.

**Problem or motivation**
A managed instance cannot get a plugin environment from its managed
config. The `environments` section accepts one entry, and that entry
always provisions the managed sandbox. Company settings cannot create a
plugin environment either. So each managed instance that needs one
requires manual setup.

**Proposed solution**
Let an `environments` entry declare `driver: "plugin"`. Boot provisions
one locked row for each plugin entry through the row layer from #19490.
A later pull request adds a one-time instance default for one plugin
entry, and advertises the new managed-config capability.

**Alternatives considered**
Manual setup on each instance, and a new control-plane endpoint. Both
need a step outside the deploy. The managed config already delivers the
sandbox entry.

**Roadmap alignment**
This extends the existing managed-config `environments` section, which
already provisions the managed sandbox. It adds no new product surface.

## What Changed

- `server/src/services/managed-config.ts`: an `environments` entry may
set `driver` to `"sandbox"` or `"plugin"`. An entry without `driver` is
still the sandbox entry, so today's documents parse unchanged.
- A plugin entry has `name`, optional `description`, `pluginKey` (the
plugin's manifest id), `driverKey` and optional `driverConfig`.
- At most one sandbox entry. Names are unique across the section, and
`pluginKey`–`driverKey` pairs are unique. Secret-like keys in
`driverConfig` refuse startup, as for sandbox `config`. An unknown key
or driver still refuses startup, and that includes `instanceDefault`
until the follow-up pull request.
- Plugin entries parse into a new `pluginEnvironments` list. The
`environments` list keeps only the sandbox entry, so its consumers do
not change.
  - `MANAGED_ENVIRONMENT_DRIVERS` lists the accepted drivers.
- `server/src/services/managed-environments.ts`
(`applyManagedEnvironments`):
- Boot refuses to start unless an auto-installed catalog entry installs
each plugin entry's `pluginKey`. `plugins.autoInstall` holds catalog
keys, not manifest ids, so the parser cannot check this. Boot uses the
manifest ids `createApp` already resolves from the bundled and
distribution catalogs (`app.locals.managedBundledPluginKeys`, passed in
by `server/src/index.ts`). Without that list it resolves the catalog
itself.
- Plugin entries run after the sandbox entry and reuse its readiness
handling. Boot awaits `pluginsReady`, then requires the plugin `ready`,
declaring the entry's driver, and running a worker. Otherwise boot
archives the row and re-ensures it on the worker's `ready`.
- Recovery re-ensures on every worker `ready` until one ensure succeeds
or the plugin rejects the config (HTTP 422).
- If the ensure fails because the worker died, boot archives the row and
waits for `ready`. If the worker is still running (for example the call
timed out), boot keeps the row as it is, retries once at once and on the
next `ready`, and otherwise at the next boot. No timer is added.
  - Removing an entry never archives its row.
- A plugin-only document does not conflict with
`PAPERCLIP_EXECUTION_MODE`, because plugin rows do not use the sandbox
slot.
- Plugin entries never change the instance default. The sandbox stamp
still fills only an unset or local default, so it never replaces a
plugin default.
- `server/src/routes/environments.ts`: `isPlatformSlotEnvironment`
treats a marked plugin row as a live slot while the document declares
its entry. So the marker-clear escape hatch is refused then, and allowed
again after the entry leaves the document.
- `doc/DEVELOPING.md`: new "Managed environments" section.

## Verification

- `cd server && npx vitest run src/__tests__/managed-config.test.ts`:
old documents parse unchanged. Sandbox plus plugin parses. Each of these
refuses startup: two sandbox entries, `driver: null`, duplicate names, a
duplicate pair, a secret-like key, an unknown key (including
`instanceDefault`), an unknown driver, a malformed `driverKey` or
`driverConfig`.
- `npx vitest run
src/services/managed-environments-plugin-entries.test.ts` (the
sandbox-entry tests stay in `managed-environments.test.ts`; shared
fixtures are in `managed-environments.test-support.ts`):
- A plugin entry is ensured with the validator's worker manager, after
the sandbox entry.
- Boot refuses a plugin entry whose `pluginKey` no auto-installed
catalog entry installs, both from the passed list and from its own
catalog lookup.
- A plugin that is down archives the row, and worker recovery re-ensures
it. A missing plugin, a plugin without the driver, or a worker manager
without `call` counts as unavailable.
- Recovery stays armed after a failed attempt and stops after one
success or a permanent config rejection (422). A `ready` during an
attempt queues one more.
- A worker that dies during the boot ensure archives the row and arms
recovery. A failure while the worker keeps running leaves the row as it
is and retries.
- Removing an entry does not archive. Plugin entries and the sandbox
stamp never change a plugin default.
  - An ensure failure is counted, not thrown.
- `npx vitest run src/__tests__/managed-plugin-environments.test.ts`
(embedded Postgres, real `applyManagedEnvironments`): the first boot
creates the row and the second changes nothing. A plugin that is down
archives the row, and recovery brings it back. Removing the entry does
not archive the row. The instance default stays unset. The row tests
from #19490 still pass.
- `npx vitest run src/__tests__/environment-routes.test.ts`: the marker
clear is refused while the document declares the entry, and allowed
after it leaves.
- `npx vitest run src/__tests__/instance-settings-service.test.ts
src/__tests__/instance-settings-cloud-defaults.test.ts`: pass with the
new `pluginEnvironments` field.
- `pnpm --filter @paperclipai/server typecheck` passes.
- I did not run the full `pnpm test:run`, `pnpm -r typecheck` or `pnpm
build`. CI covers them.

## Risks

- No schema change.
- A managed-config document with a plugin entry now provisions a row at
boot. A document without one behaves as before.
- Adoption renames an unmarked row for the same plugin and driver to the
declared name and resets its driver config to the declared one. The row
keeps its id, agents and other metadata, and it is then locked like the
managed sandbox.
- Boot now refuses to start when a plugin entry names a plugin that no
auto-installed catalog entry provides. This is the same fail-closed
posture as an unknown sandbox provider.

> For core feature work, check [`ROADMAP.md`](ROADMAP.md) first and
discuss it in `#dev` before opening the PR. Feature PRs that overlap
with planned core work may need to be redirected — check the roadmap
first. See `CONTRIBUTING.md`.

## Model Used

- Claude Opus 5.5 (`claude-opus-5-5`), Anthropic, through Claude Code
with tool use (file edits, shell, test runs).

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have searched GitHub for duplicate or related PRs and linked
them above
- [x] I have either (a) linked existing issues with `Fixes: #` / `Closes
#` / `Refs #` OR (b) described the issue in-PR following the relevant
issue template
- [x] I have not referenced internal/instance-local Paperclip issues or
links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip`
URLs)
- [x] My branch name describes the change (e.g. `docs/...`, `fix/...`)
and contains no internal Paperclip ticket id or instance-derived details
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [ ] All Paperclip CI gates are green
- [ ] Greptile is 5/5 with no open P2s, recommendations, or follow-ups
- [x] I will address all Greptile and reviewer comments before
requesting merge

🤖 Generated with [Claude Code](https://claude.com/claude-code)

---------

Co-authored-by: Claude Opus 5.5 <noreply@anthropic.com>
2026-11-06 17:35:13 +00:00
DottaandClaude Opus 5.5 543aa4d331 fix(tasks): show a pending native same-run resume instead of a competing Retry (#19503)
## Thinking Path

> - Paperclip is the open source app people use to manage AI agents for
work
> - When a native run cannot reattach to its provider after a
control-plane restart, the native coordinator resumes the same run by
itself after about 30 seconds, up to three attempts
> - The run projection shows this correctly as "Retry scheduled" with
only `inspect_run` permitted
> - The task interruption shown on the issue read only system-recovery
evidence and `scheduledRetryAt`. It never read the coordinator's
`nextAttemptAt`, so it showed `state: failed, canRetry: true` and
offered a manual Retry while the automatic resume was still pending
> - The two surfaces disagree, and a user click can race the automatic
resume. That is one way a Retry gets parked behind "execution checks"
> - This pull request makes the task interruption read the coordinator's
pending resume time
> - The benefit is one consistent story: while the automatic resume is
pending, the task shows it with its time and no competing Retry. If
recovery ends, exactly one Retry returns

## Linked Issues or Issue Description

Refs #19487, #19497, #19426.

**What happened?**
A native run failed with `native_session_interrupted` after a restart.
Its finalization row had `phase: retryable_failure` and `nextAttemptAt`
30 seconds later. The run projection said "Retry scheduled". The issue
interruption said `state: failed, canRetry: true, nextRetryAt: null`.

**What did you expect?**
While the automatic resume is pending, the task shows that it is
resuming, with the time, and no Retry. When the resume fails for good or
never runs, exactly one Retry that works on the first click.

**Steps to reproduce**
1. Run a native task and restart the control plane so the native attach
fails.
2. Read `GET /api/issues/:id` while the coordinator's resume is pending.
3. Observe `interruption.canRetry: true` while `execution.phase` is
`retry_scheduled`.

## What Changed

- `task-interruption-presentation.ts`: the batched run read selects the
native coordinator's `next_attempt_at` when the native run failed, has
no result, and its finalization phase is `retryable_failure`.
- A pending resume in the future shows `retry_scheduled` with its time
and `canRetry: false`.
- A due resume shows `working` for up to two minutes while its dispatch
runs. After that, or once recovery is terminal, the task falls through
to the existing single Retry.

## Verification

- `task-interruption-presentation.test.ts`: new case for a future
resume, a due resume, a stale resume, and no resume. It fails before the
change (the task offered Retry) and passes after.
- `task-interruption-query.test.ts` (embedded Postgres): the real
batched query shows the pending resume for both list and detail reads,
and returns one Retry after the coordinator becomes `terminal_failure`.
- All 40 presentation tests and 17 query tests pass. Server typecheck
passes.

## Risks

- Low risk. This changes only the read model for tasks whose native
coordinator holds a pending same-run resume.
- If a resume never dispatches, Retry is hidden for up to two minutes
after its due time before it returns.
- The `POST /issues/:id/retry` endpoint is unchanged. A client that
ignores `canRetry` can still submit a Retry during the resume.

## Model Used

- Claude Opus 5.5 (`claude-opus-5-5`), Anthropic, via Claude Code with
tool use (shell, file editing, embedded Postgres tests).

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have searched GitHub for duplicate or related PRs and linked
them above
- [x] I have either (a) linked existing issues with `Fixes: #` / `Closes
#` / `Refs #` OR (b) described the issue in-PR following the relevant
issue template
- [x] I have not referenced internal/instance-local Paperclip issues or
links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip`
URLs)
- [x] My branch name describes the change (e.g. `docs/...`, `fix/...`)
and contains no internal Paperclip ticket id or instance-derived details
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [ ] All Paperclip CI gates are green
- [ ] Greptile is 5/5 with no open P2s, recommendations, or follow-ups
- [x] I will address all Greptile and reviewer comments before
requesting merge

🤖 Generated with [Claude Code](https://claude.com/claude-code)

Co-authored-by: Claude Opus 5.5 <noreply@anthropic.com>
2026-11-06 11:33:46 -06:00
Nicky LeachandClaude Opus 5.5 ff1d1dea5d fix(tools): reject non-tool connections before any write (#19492)
## Thinking Path

> - Paperclip is the open source app people use to manage AI agents for
work
> - Apps and tools connect to Paperclip through tool connections
> - `POST /api/companies/:companyId/tools/connections` creates a tool
connection through `createConnection`
> - The request schema accepts a channel purpose and the chat and voice
transports, but `createConnection` cannot store them
> - The database then rejects the row, so the caller gets a 500 and a
stray tool application stays behind
> - This pull request rejects those requests with a 422 before any
write, and stores `config` as `transportConfig` when the caller leaves
`transportConfig` out
> - The benefit is a clear error, no leftover rows, and consistent
connection rows

## Linked Issues or Issue Description

No issue exists. The new test typecheck in #18739 found this problem.
#18739 listed it as a possible product problem and did not change it.

**What happened?**

1. `createConnection` never writes `input.connectionPurpose`, so every
row gets the database default `tool`.
2. The schema allows `transport: "chat_sdk"` and `transport: "voice"`.
The database check `tool_connections_channel_transport_check` does not
allow these transports on a `tool` row.
3. No error mapping exists for a check violation, so the route returns
500.
4. When the request has no `applicationId`, the service inserts a
`tool_applications` row first, outside the connection transaction. That
row stays after the failure.
5. The schema gave `transportConfig` a default of `{}`. The service
stores `input.transportConfig ?? config`, so it stored `{}` instead of a
copy of `config`.

**Expected behavior**

The route returns 422 for a purpose or transport that it cannot create,
and writes no rows. When the request leaves `transportConfig` out, the
row stores `config` there.

**Steps to reproduce**

1. Send `POST /api/companies/:companyId/tools/connections` with `{
"name": "x", "transport": "chat_sdk" }`.
2. See the 500 response.
3. See the new `tool_applications` row for the company.

## What Changed

- `server/src/services/tool-access.ts`: `createConnection` rejects a
purpose other than `tool`, and the `chat_sdk` and `voice` transports,
with 422. The check runs before any lookup or write. Channel connections
still come from their own services.
- `packages/shared/src/validators/tool-access.ts`: `transportConfig` is
optional and has no default. The update schema already removed defaults,
so it does not change.
- `server/src/__tests__/tool-access-service.test.ts`: added tests for
the three rejected inputs (no rows written), and for a request that
sends only `config`.

## Verification

- `pnpm exec vitest run server/src/__tests__/tool-access-service.test.ts
server/src/__tests__/generic-mcp-connection.test.ts
server/src/__tests__/tool-connection-health-work.test.ts
server/src/__tests__/openapi-routes.test.ts
server/src/__tests__/tool-access-routes.test.ts
packages/shared/src/validators`: 27 files, 995 tests pass.
- `cd server && pnpm typecheck`: passes. This includes the source layers
and the three test-tree shards.
- Not run locally: the full `pnpm test:run`, the root `pnpm build`, and
the UI typecheck. Required CI covers them.

## Risks

- Low risk. A client that sends a channel purpose or a chat or voice
transport to this route now gets 422 instead of 500. The request failed
before this change too.
- A client that sends only `config` now gets the same value in
`transportConfig`. Every reader checks `config` first, so this changes
no behavior.
- The OpenAPI output for this body no longer shows a default for
`transportConfig`.

## Model Used

- Claude Opus 5.5 (`claude-opus-5-5`) in Claude Code, with tool use
(shell, file edits) and extended thinking.

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have searched GitHub for duplicate or related PRs and linked
them above
- [x] I have either (a) linked existing issues with `Fixes: #` / `Closes
#` / `Refs #` OR (b) described the issue in-PR following the relevant
issue template
- [x] I have not referenced internal/instance-local Paperclip issues or
links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip`
URLs)
- [x] My branch name describes the change (e.g. `docs/...`, `fix/...`)
and contains no internal Paperclip ticket id or instance-derived details
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [ ] All Paperclip CI gates are green
- [ ] Greptile is 5/5 with no open P2s, recommendations, or follow-ups
- [ ] I will address all Greptile and reviewer comments before
requesting merge

🤖 Generated with [Claude Code](https://claude.com/claude-code)

Co-authored-by: Claude Opus 5.5 <noreply@anthropic.com>
2026-11-06 17:30:24 +00:00
Nicky LeachandClaude Opus 5.5 21a1e78852 feat(environments): add managed plugin environment rows (#19490)
## Thinking Path

> - Paperclip is the open source app people use to manage AI agents for
work
> - A managed instance gets its instance-level environments from the
`PAPERCLIP_MANAGED_CONFIG` document
> - That document cannot declare a plugin environment yet, so a managed
instance cannot get a plugin-provided environment without manual setup
> - The full change is split into three pull requests. This first one
adds the plugin environment rows and their write floor, and nothing
calls them yet
> - The second pull request lets the managed config declare plugin
entries and provisions them at boot. The third sets the instance default
once and advertises the new managed-config capability
> - The benefit is a smaller review for each step, and no instance
changes behavior until the last step lands

## Linked Issues or Issue Description

**Subsystem affected**
Server environments (managed-config environment provisioning,
environment routes) and the board UI's adapter Test target.

**Problem or motivation**
A managed instance cannot get a plugin environment from its managed
config. Company settings cannot create one either. So each managed
instance that needs one requires manual setup.

**Proposed solution**
Over three pull requests, let an `environments` entry in the managed
config declare `driver: "plugin"`. Boot then provisions one locked row
for each plugin entry, and makes one of them the instance default once
on new instances. This pull request adds only the row layer: create or
adopt a marked row, archive it, find it, and keep tenants from editing
it.

**Alternatives considered**
Manual setup on each instance, and a new control-plane endpoint. Both
need a step outside the deploy. The managed config already delivers the
sandbox entry.

**Roadmap alignment**
This extends the existing managed-config `environments` section, which
already provisions the managed sandbox. It adds no new product surface.

## What Changed

- New `server/src/services/managed-plugin-environments.ts`, used through
new `environmentService` methods (`ensureManagedPluginEnvironment`,
`archiveManagedPluginEnvironment`, `findManagedPluginEnvironment`):
- The ensure validates the driver config through
`normalizeEnvironmentConfig` and
`validatePluginEnvironmentDriverConfig`, the same path an
operator-created plugin environment takes.
- It marks the row `managedByPaperclip: true` and
`managedPluginEnvironment: "<pluginKey>:<driverKey>"`.
- It adopts an existing unmarked row for the same plugin and driver
instead of adding a second one, so a hand-made row keeps its agents.
- A row that already matches gets no write. Changes write activity log
entries.
- Archive sets an active marked row to `archived`. The next ensure
reactivates it.
- Migration `0437`: unique index
`environments_managed_plugin_environment_idx` on `metadata ->>
'managedPluginEnvironment'`. This is the only schema change of the three
pull requests. Snapshot `0432` is pruned to keep the five newest.
- `server/src/routes/environments.ts`:
`isPlatformProvisionedEnvironment` also covers the new marker (write
floor and redaction). `managedPluginEnvironment` is a reserved marker
key, so a client cannot stamp it on its own row. Nothing provisions
marked rows yet, so the marker-clear escape hatch stays open for them.
The next pull request refuses it while the managed config declares the
row's entry.
- `ui/src/lib/adapter-test-environment.ts`:
`resolveManagedSandboxEnvironmentId` requires `driver === "sandbox"`.
The plugin row also carries `managedByPaperclip`, so the old "not local"
check could take it for the managed sandbox.

## Verification

- `cd server && npx vitest run
src/__tests__/managed-plugin-environments.test.ts` (embedded Postgres):
- The ensure creates the marked row through the plugin validator. A
second ensure writes nothing and logs nothing.
- A hand-made row for the same plugin and driver is adopted. It keeps
its id and its agents.
  - Archive, then ensure, reactivates the row.
- The ensure refuses while the plugin has no running worker, and refuses
a name that another environment holds.
  - The unique index allows one row per marker.
- `npx vitest run src/__tests__/environment-routes.test.ts`: on a
cloud-managed instance, edit, env-var edit, status change and delete of
a marked plugin row are refused, including for instance admins. The
marker alone keeps the floor. A client cannot stamp the marker. The
marker clear is allowed.
- `npx vitest run src/__tests__/environment-service.test.ts`: passes.
- `cd ui && npx vitest run src/lib/adapter-test-environment.test.ts`:
the plugin row is never taken for the managed sandbox. Under
managed-sandbox-only, an agent on the sandbox tests in the sandbox, and
an agent on the plugin environment tests there.
- `pnpm --filter @paperclipai/server typecheck`, `pnpm --filter
@paperclipai/ui typecheck` and `pnpm --filter @paperclipai/db
check:migrations` pass.
- I did not run the full `pnpm test:run`, `pnpm -r typecheck` or `pnpm
build`. CI covers them. `pnpm verify` asks for broader verification
because of the migration.

## Risks

- Migration: one new partial unique index on a small table. No row
carries the marker before this change, so the index cannot fail on
existing data.
- No caller uses the new ensure yet, so no instance changes behavior.
- The UI change affects only lists that hold a non-sandbox row with
`managedByPaperclip`. Today that is only the local row, which the old
check already excluded.

> For core feature work, check [`ROADMAP.md`](ROADMAP.md) first and
discuss it in `#dev` before opening the PR. Feature PRs that overlap
with planned core work may need to be redirected — check the roadmap
first. See `CONTRIBUTING.md`.

## Model Used

- Claude Opus 5.5 (`claude-opus-5-5`), Anthropic, through Claude Code
with tool use (file edits, shell, test runs).

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have searched GitHub for duplicate or related PRs and linked
them above
- [x] I have either (a) linked existing issues with `Fixes: #` / `Closes
#` / `Refs #` OR (b) described the issue in-PR following the relevant
issue template
- [x] I have not referenced internal/instance-local Paperclip issues or
links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip`
URLs)
- [x] My branch name describes the change (e.g. `docs/...`, `fix/...`)
and contains no internal Paperclip ticket id or instance-derived details
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [ ] All Paperclip CI gates are green
- [ ] Greptile is 5/5 with no open P2s, recommendations, or follow-ups
- [x] I will address all Greptile and reviewer comments before
requesting merge

🤖 Generated with [Claude Code](https://claude.com/claude-code)

---------

Co-authored-by: Claude Opus 5.5 <noreply@anthropic.com>
2026-11-06 16:52:43 +00:00
Nicky LeachandClaude Opus 5.5 fcf5dc2395 fix(ai-connections): reject unknown binding modes before grant checks (#19494)
## Thinking Path

> - Paperclip is the open source app people use to manage AI agents for
work
> - Agents run on AI accounts that people connect as AI connections
> - Before a run, `aiConnectionService.select` resolves the agent's
binding to one account grant and checks who may use it
> - The grant-kind checks cover only the `responsible_user`, `shared`
and `delegated` modes
> - Every caller parses the binding first, so no other mode reaches
`select` today. But if one did, it would skip the grant-kind checks
> - This pull request rejects any other mode before `select` reads any
data
> - The benefit is that an authorization check cannot be skipped through
a bad binding in the future

## Linked Issues or Issue Description

No issue exists. The new test typecheck in #18739 showed that a test
passed `mode: "connection"`, which is not a valid mode. #18739 fixed the
test and listed the production question.

**What existing behavior does this improve?**

`select` in `server/src/services/ai-connections.ts` reads
`binding.grantId` for every mode except `responsible_user`. It checks
the grant kind only when the mode is `shared` or `delegated`.

**Current behavior**

All runtime callers parse the binding with
`aiRuntimeConnectionBindingSchema` or `aiConnectionBindingSchema` first
(`heartbeat.ts`, `agent-harness-verification.ts`, `routes/agents.ts`).
So no live path sends an unknown mode. If a future caller skipped
parsing, an unknown mode would pass with no grant-kind check.

**Proposed behavior**

`select` rejects an unknown mode with the existing
`ai_connection_incompatible` failure (422), before it reads any data.

**Reason and benefit**

A guard in the owner of the check is cheaper than trusting every future
caller.

**Breaking changes**

None. Valid bindings behave the same.

## What Changed

- `server/src/services/ai-connections.ts`: `select` throws
`ai_connection_incompatible` for any mode other than `responsible_user`,
`shared` or `delegated`.
- `server/src/__tests__/ai-connection-binding-mode.test.ts`: new test.
It sends `mode: "connection"` and expects a 422 with no database read.

## Verification

- `pnpm exec vitest run
server/src/__tests__/ai-connection-binding-mode.test.ts`: passes.
Without the service change, the same test fails because `select` reads
the database.
- `pnpm exec vitest run server/src/__tests__/ai-connections.test.ts
server/src/__tests__/agent-hire-ai-connections.test.ts
server/src/__tests__/ai-connection-binding-mode.test.ts`: 3 files, 243
tests pass.
- `cd server && pnpm typecheck`: passes. This includes the source layers
and the three test-tree shards.
- Not run locally: the full `pnpm test:run` and the root `pnpm build`.
Required CI covers them.

## Risks

- Low risk. The new check only rejects bindings that the schemas already
reject.

## Model Used

- Claude Opus 5.5 (`claude-opus-5-5`) in Claude Code, with tool use
(shell, file edits) and extended thinking.

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have searched GitHub for duplicate or related PRs and linked
them above
- [x] I have either (a) linked existing issues with `Fixes: #` / `Closes
#` / `Refs #` OR (b) described the issue in-PR following the relevant
issue template
- [x] I have not referenced internal/instance-local Paperclip issues or
links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip`
URLs)
- [x] My branch name describes the change (e.g. `docs/...`, `fix/...`)
and contains no internal Paperclip ticket id or instance-derived details
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [ ] All Paperclip CI gates are green
- [ ] Greptile is 5/5 with no open P2s, recommendations, or follow-ups
- [ ] I will address all Greptile and reviewer comments before
requesting merge

🤖 Generated with [Claude Code](https://claude.com/claude-code)

Co-authored-by: Claude Opus 5.5 <noreply@anthropic.com>
2026-11-06 16:28:25 +00:00
Nicky LeachandClaude Opus 5.5 e1332b997f fix(plugins): align tool run context and interaction input types (#19493)
## Thinking Path

> - Paperclip is the open source app people use to manage AI agents for
work
> - Plugins add tools and issue-thread interactions through
`@paperclipai/plugin-sdk`
> - The SDK types are the public contract between the host and plugin
authors
> - Two parts of that contract do not match what the host does at
runtime
> - First, `ToolRunContext.projectId` says it is always a project UUID.
The tool gateway sends an empty string when a run has no project. The
direct tool route rejects such runs with 400
> - Second, three interaction helpers ask for the parsed output type, so
plugin authors must pass fields that the host fills in with defaults
> - This pull request makes the types and both tool paths agree with the
runtime
> - The benefit is that agents with no project can run plugin tools, and
plugin authors can omit the fields that have defaults

## Linked Issues or Issue Description

Fixes #3273

Related: #3274 removes the `projectId` requirement from the route. That
change alone is not enough today: the route now also looks up the
project to check its company, and that lookup needs a value. This pull
request also skips that lookup when the run has no project. It gives
plugins one value for "no project" on both tool paths.

The new test typecheck in #18739 and #18839 also listed both problems as
possible product problems.

## What Changed

- `server/src/routes/plugins.ts`: `POST /api/plugins/tools/execute`
accepts a `runContext.projectId` that is missing, `null`, or an empty
string. It passes an empty string to the plugin, the same value that the
tool gateway sends. It checks the project's company only when a project
ID is present. A `projectId` that is not a string returns 400.
- `server/src/routes/openapi.ts`: the request schema marks
`runContext.projectId` as optional and nullable.
- `packages/plugins/sdk/src/types.ts`:
- The `ToolRunContext.projectId` comment says the value is an empty
string when the run has no project.
- `suggestTasks`, `requestConfirmation` and
`requestCheckboxConfirmation` take `CreateIssueThreadInteractionInput`,
as `askUserQuestions` already does. The host parses this input with the
schema, so the defaults apply.
- `packages/plugins/examples/plugin-kitchen-sink-example/src/worker.ts`:
the example passes `undefined` instead of an empty project ID to
`issues.create`.
- `doc/plugins/PLUGIN_SPEC.md` (section 13.10): documents the empty
project ID.
- Tests:
- `server/src/__tests__/plugin-routes-authz.test.ts`: tests a run with
an empty, missing, or `null` project ID, which skips the project lookup.
Also tests that a project ID that is not a string returns 400.
- `packages/plugins/sdk/tests/testing-actions.test.ts`: removes the cast
that the output type required.

## Verification

- `pnpm exec vitest run server/src/__tests__/plugin-routes-authz.test.ts
server/src/__tests__/openapi-routes.test.ts
packages/plugins/sdk/tests/testing-actions.test.ts`: 3 files, 81 tests
pass.
- `cd server && pnpm typecheck`: passes. This includes the source layers
and the three test-tree shards.
- `tsc --noEmit` passes for `packages/plugins/sdk` (`tsconfig.json` and
`tsconfig.test.json`) and for the kitchen-sink example.
- Not run locally: the full `pnpm test:run` and the root `pnpm build`.
Required CI covers them.

## Risks

- Low risk. The direct tool route now accepts calls that it rejected
before. It still checks that the agent and the run belong to the
company. With no project ID, there is no project to check.
- A plugin that reads `runCtx.projectId` can get an empty string on both
tool paths. The tool gateway already sent this value before this change.
Only the documentation is new.
- The SDK parameter types are wider. Existing plugin code still
compiles.

## Model Used

- Claude Opus 5.5 (`claude-opus-5-5`) in Claude Code, with tool use
(shell, file edits) and extended thinking.

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have searched GitHub for duplicate or related PRs and linked
them above
- [x] I have either (a) linked existing issues with `Fixes: #` / `Closes
#` / `Refs #` OR (b) described the issue in-PR following the relevant
issue template
- [x] I have not referenced internal/instance-local Paperclip issues or
links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip`
URLs)
- [x] My branch name describes the change (e.g. `docs/...`, `fix/...`)
and contains no internal Paperclip ticket id or instance-derived details
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [ ] All Paperclip CI gates are green
- [ ] Greptile is 5/5 with no open P2s, recommendations, or follow-ups
- [ ] I will address all Greptile and reviewer comments before
requesting merge

🤖 Generated with [Claude Code](https://claude.com/claude-code)

Co-authored-by: Claude Opus 5.5 <noreply@anthropic.com>
2026-11-06 16:25:43 +00:00
51a65af9b8 fix(recovery): continue preserved preparation after process loss (#19464)
## Thinking Path

> - Paperclip manages AI agents and their execution state.
> - A server restart can stop workspace preparation before provider
execution.
> - Workspace recovery must preserve files before the task can continue.
> - Recovery handled interrupted preparations but skipped failed
process-loss records with the same no-provider certificate.
> - A withheld first retry could also hide the remaining retry budget.
> - This change resumes certified preparations through normal admission
after file recovery.

## Linked Issues or Issue Description

**What happened?**
A process-loss attempt remained failed after workspace recovery
completed. Its first retry had been cancelled before dispatch by the
workspace hold. The task had no running attempt or automatic
continuation.

**Expected behavior**
Continue once after the server proves that provider work did not start,
file preservation completed, and the exact leases stopped. Retain the
existing failure budget and all task admission gates.

**Steps to reproduce**
1. Stop a Runner preparation before native runtime selection. Record the
restart recovery bootstrap certificate.
2. Retain the workspace and withhold the first automatic retry before
dispatch.
3. Complete file preservation and restart the recovery worker.
4. Observe that the old code schedules no successor. The regression test
reproduces this with PostgreSQL and real filesystem operations.

**Paperclip version or commit**
Reproduced against master at `2f35eb1080`. Related prior work: #19422
continues saved user input after verified copy-back. This change handles
automatic continuation of certified process-loss preparation.

## What Changed

- Accept failed process-loss preparation only with the durable
no-provider bootstrap certificate and existing execution, lease and file
checks.
- Discover and settle the recovered source through the existing
preparation recovery path.
- Continue from a verified withheld retry without rewriting its history
or resetting its failure count. Adopt it only as the sole retry child;
multiple-child history reuses the newest existing child
deterministically.
- Exercise automatic dispatch, preserved-file readback, one provider
turn, accepted result and task completion in the local native-session
fixture.
- Keep a durable continuation receipt after file-hold settlement until a
successor is recorded. Known gates wait for existing eligibility events.
Unresolved delivery keeps its shared recovery deadline.
- Document the recovery and retry-budget rules.

## Verification

- Red: both new PostgreSQL/filesystem regressions failed with zero
scheduled successors where one was required.
- Green: 54 focused recovery, automatic-dispatch, interruption,
multiple-child history and admission safety cases pass on `13c27c2c2f`.
The full PostgreSQL admission adapter suite passes all 83 tests; server
source declaration typecheck also passes. Local environment: Darwin
arm64, Node 26.4.0, PostgreSQL 18.1, Vitest 5.0.3.
- Additional red/green: interruption after committed settlement,
pause/resume, failed enqueue after cursor advancement, and absence of an
earlier retry all failed before their repairs. Restart before enqueue,
restart after the successor claim, and pause/resume now preserve one
continuation. A rolled-back eligibility change cannot start execution.
Deferred and delivered records have no retry deadline.
- Local acceptance uses the real heartbeat dispatcher, isolated files
and PostgreSQL, with a simulated native provider. It reads the preserved
file, writes continued work, accepts the structured result and completes
the task once.
- Negative cases retain no-certificate, provider-evidence, live-owner,
Stop, missing-stop-receipt, wrong-snapshot, human-block, pause,
reassignment, approval and exhaustion fences.
- CI fixture regression: 4 error-propagation/concurrent-resolution cases
pass after adding the new obligation read to their transaction stubs;
existing assertions remain unchanged.
- Existing idle-drain and notification contract regressions: 4 tests
pass after restricting recovery wakes to actual durable obligations.
Late approvals block scheduled, queued and final dispatch.
- Additional existing retry-scheduling suite: 62 cases pass locally. The
pre-provider quota case exceeds its existing 5-second terminal wait on
this loaded Darwin host, including when tested alone and with the
preceding retry implementation. It remains a local timing limitation;
the assertion and timeout were not changed. All Linux CI server shards
pass on the combined head, including this unchanged suite.
- Existing run-control, legacy-recovery and shared execution-control
lifecycle suites: 128 tests pass with the review repair. Required CI
supplies final-revision broad coverage.
- Real-Codex acceptance was not run: automatic approval review rejected
authenticated provider execution because it could incur cost/external
effects and required explicit approval. No provider call ran; the
controlled-provider acceptance covers the causal restart and durable
scheduling behavior.
- Hosted acceptance and recovery of existing tasks require rollout. They
have not been claimed from the local provider fixture.
- Final-head review: Greptile 5/5 on `13c27c2c2f`, no outstanding
findings. Another contributor added the multiple-child history safety
repair in `13c27c2c2f` while CI was running. The delta was inspected and
the 54 focused recovery cases rerun successfully. Required CI passes on
that exact combined head:
https://github.com/paperclipai/paperclip/actions/runs/42241794918. All
55 successful checks include aggregate `ci / verify`, typecheck, build,
canary, all server and E2E shards, and Runner package/Rust/static
checks. The separate Paperclip Review service check remains queued
waiting for its assigned agent; no validated assessment has been
returned.

## Risks

A malformed preparation certificate or a false no-execution receipt
could permit duplicate work. The existing checks still reject provider
execution records, native coordinators, live controllers, unsettled
leases and unverified files. The pending continuation must survive a
restart without polling known admission blockers. A withheld retry
retains its original row and consumes its remaining failure budget.
Normal admission checks current ownership, approvals, pause and budgets.

## Model Used

OpenAI GPT-6 family via Codex. The exact model ID and context window are
unavailable in session metadata. Used reasoning, code editing and tool
execution.

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have searched GitHub for duplicate or related PRs and linked
them above
- [x] I have either (a) linked existing issues with `Fixes: #` / `Closes
#` / `Refs #` OR (b) described the issue in-PR following the relevant
issue template
- [x] I have not referenced internal/instance-local Paperclip issues or
links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip`
URLs)
- [x] My branch name describes the change (e.g. `docs/...`, `fix/...`)
and contains no internal task id or instance-derived details
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [x] All Paperclip CI gates are green
- [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups
- [x] I will address all Greptile and reviewer comments before
requesting merge

---------

Co-authored-by: Paperclip <noreply@paperclip.ing>
Co-authored-by: Devin Foley <devin@paperclip.ing>
2026-11-06 09:36:46 -06:00
Nicky LeachandClaude Opus 5.5 026dc6d135 fix(native): release a session-resume owner when the resumed run fails before its provider claim (#19371)
## Thinking Path

> - Paperclip is the open source app people use to manage AI agents for
work
> - Native runs keep a finalization row. Its lease owner tells the
control plane that an execution may still be live.
> - Pausing an agent waits for `agentExecutionsHaveStopped`. That check
refuses to finish while any run of the agent has a lease owner, unless
the run was cancelled and has stop proof.
> - A same-run session resume claims that lease before it dispatches the
run. If the run then fails before the native executor takes its own
provider claim, nothing releases the resume owner.
> - The leaked owner blocks pause and resume for good, and the task
keeps looking like it has a live recovery path.
> - This pull request settles those rows at the source, and it adds a
stop-proof-gated release for rows that already leaked.
> - The benefit is that agents can pause and resume after an ordinary
resume failure, without database edits, and the cancelled-run stop-proof
rule stays as it is.

## Linked Issues or Issue Description

**What happened?**

An agent stayed in `pausing` with `hostComplete=false` and climbing
attempts. Its runs had `native_run_finalizations` rows with `phase:
observed`, `recovery_state: resuming_session`, a `lease_owner` like
`default:resume:<uuid>`, and no `result_id`. Each heartbeat run had
ended `failed`: either `setup_failed` (`Failed to acquire lease for
environment … Sandbox creation has failed`,
`native_remote_recovery_lease_mismatch`) or `adapter_failed`
(`runner_state_identity_mismatch: …`). The lease expired about 20
minutes after the run finished. Nothing settled the row. The only fix
was to set `lease_owner` to null by hand.

**Expected behavior**

When a resumed run fails before any provider turn starts, its
finalization row goes to `terminal_failure` and its lease owner is
released, as the native executor does for failures it sees. A row that
leaked before this fix is released in the background once its lease
expires and the run has stop proof. Pause then completes.

**Steps to reproduce**

1. Leave a native run in `retryable_failure` with a persisted
checkpoint, on a task that already has an active recovery incident.
2. Let session resume claim it (`claimNativeSessionResumptions` sets
`phase: observed` and a `…:resume:…` owner).
3. Make the resumed run fail before the executor claims it, for example
when the environment driver cannot create the sandbox.
4. The heartbeat failure path marks the run `failed`. The issue release
path does not settle the row, because it settles only when it opens a
new incident. The owner stays set, and `agentExecutionsHaveStopped`
returns false indefinitely.

**Paperclip version or commit**

`master` at 5ac05871b5.

**Additional context**

Root cause: two writers can end a resumed run without the executor.
`failRun` and the setup-failure path in `heartbeat/run-completion.ts`
never touch the coordinator. `recordNativeTerminalRecoveryIfNeeded` in
the wake-queue adapter settles the coordinator only when no recovery
incident exists yet. Agents that need their computer connection paired
again usually already have an incident, so the owner leaks.

Related, but different: #18905, #18866, #18072, and #17692 change how
the stop check judges runs. This pull request does not change the stop
check.

## What Changed

-
`server/src/services/native-runtime/native-failed-run-owner-release.ts`
(new): one settlement for a result-less `observed` owner on a run that
ended `failed`, `timed_out`, or `interrupted`. It writes
`terminal_failure`, null lease fields, `recoveryState: "blocked"`, the
run's failure code, and a `releasedOwner` record. It sets `nativePhase`,
sends the same finalization and execution work notifications as the
executor's terminal path, and logs `native.failed_run_owner_released`
activity. Locks follow the issue, coordinator, run order.
- `settleUnstartedNativeSessionResume`: runs after a dispatched session
resume returns. It matches only the exact claim owner and the attempt
the claim saw. The executor increments the attempt when it takes
provider ownership, so an unchanged attempt proves that no provider turn
started under this owner. The executor's own failures no longer match.
- `releaseAbandonedNativeOwners`: the background release for rows that
already leaked. It requires an expired lease and all of the stop proof
that `agentExecutionsHaveStopped` checks: settled environment leases, no
live run process or process group, no live controller lease, and no live
controller process. This process answers from its in-memory execution
registries. It skips cancelled runs, pending native Stops, and pinned
workspace restores, because those have their own stop-proof owners.
- `native-finalization-reconciler.ts`: `NativeSessionResumeClaim` now
carries `attempt`.
- `heartbeat.ts` and `heartbeat/recovery.ts`: both session-resume
dispatch sites settle the claim after `executeRun` returns. This is one
`.finally` per site.
- `execution-control-reconciliation.ts` and `execution-control-work.ts`:
the execution-finalization queue runs the background release. Its
deadline includes the earliest lease expiry among eligible rows, so the
release does not poll an idle instance. Rows with unreleased sandboxes
are excluded from the deadline.
- `agent-execution-stop.ts` is unchanged. The cancelled-only release
keeps its stop-proof rule.

## Verification

- `npx vitest run
src/__tests__/heartbeat-native-resume-lease-failure.test.ts` drives the
real heartbeat resume dispatch (`reapOrphanedRuns`). A sandbox driver's
`acquireRunLease` throws `Sandbox creation has failed`, and the task has
a recovery incident. The run fails with `Failed to acquire lease for
environment "Managed computer" (sandbox): Sandbox creation has failed`,
and the coordinator ends `terminal_failure` with no lease owner. I
removed the `.finally` wiring and ran the test again. It then failed,
and the row stayed `observed` with a `default:resume:` owner and a
20-minute expiry, which is the production state.
- `npx vitest run
src/services/native-runtime/native-failed-run-owner-release.test.ts` (10
tests):
- A claimed resume that fails at lease acquisition is settled.
`agentExecutionsHaveStopped` changes from false to true. A repeated
settlement does nothing.
- An owner the executor claimed (incremented attempt) and a run that is
still running are not changed.
- A leaked `runner_state_identity_mismatch` row is released by
`reconcileAbandonedExecutionControl`, and then
`agentExecutionsHaveStopped` returns true.
- An unexpired owner still blocks the stop check. Its expiry becomes the
finalization queue deadline.
- An active environment lease and a live controller process block
release. After both stop, the row is released.
  - Cancelled runs and pending native Stops are not changed.
  - Added during review:
    - Releasing an owner wakes the cost-accounting worker.
- Releasing a run's environment lease wakes the finalization worker, and
the owner is then released.
- A recorded PID and group that now belong to an unrelated process do
not hold the owner.
- Bounded passes rotate past a held row (`[0, 1, 1]` with page size 1),
then wrap back to it.
- The immediate settle keeps the owner while the run's recorded process
is alive.
- Suites that cover the changed files pass together: the two new files,
`native-session-resumption.test.ts` (with the claim shape updated),
`execution-control-reconciliation.test.ts`,
`execution-control-work.test.ts`, and
`agent-lifecycle/__tests__/lifecycle.test.ts`. With
`environment-cleanup-work.test.ts` added, that is 7 files and 156 tests.
I did not run the full `heartbeat-process-recovery.test.ts` suite
locally. CI runs it.
- `pnpm --filter @paperclipai/server typecheck` passes.

## Risks

- Behaviour change: a resumed run that fails during setup now ends with
a terminal coordinator in every case. Before, this happened only when
the issue release path opened a new incident. After a restart, restart
recovery no longer sees such a row as `observed`. This matches what the
release path already does when no incident exists.
- The background release trusts an expired lease on a run that is
already terminal, together with the same process and lease evidence that
the stop check uses. A controller on another host cannot be probed by
PID. The stop check has the same limit today. A live owner still renews
its lease, and lease-gated writes from an expired owner are already
refused.
- If an expired row's process or controller still looks live, the
release retries at the shared 15-second finalization cadence until that
process exits. Each pass handles one bounded page, and a rotating cursor
moves to the next page on each pass.
- A run-scoped environment cleanup notification now also wakes the
execution-finalization queue. Passes are coalesced, and a pass is a
cheap deadline query when nothing is eligible.
- No schema change and no migration.

## Model Used

- Claude Opus 5.5 (`claude-opus-5-5`) through Claude Code, with tool use
(shell, file edits, local test runs).

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have searched GitHub for duplicate or related PRs and linked
them above
- [x] I have either (a) linked existing issues with `Fixes: #` / `Closes
#` / `Refs #` OR (b) described the issue in-PR following the relevant
issue template
- [x] I have not referenced internal/instance-local Paperclip issues or
links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip`
URLs)
- [x] My branch name describes the change (e.g. `docs/...`, `fix/...`)
and contains no internal Paperclip ticket id or instance-derived details
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [x] All Paperclip CI gates are green
- [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups
- [x] I will address all Greptile and reviewer comments before
requesting merge

🤖 Generated with [Claude Code](https://claude.com/claude-code)

---------

Co-authored-by: Claude Opus 5.5 <noreply@anthropic.com>
2026-11-06 07:19:09 -08:00
DottaandPaperclip 4696ff4990 fix: reserve agent In Progress display for active runs (#19453)
## Thinking Path

> - Paperclip is the open source app people use to manage AI agents for
work.
> - Task status must tell operators whether an agent is working or
waiting.
> - A task can retain its in-progress lifecycle status after its run
stops.
> - The shared read projection only handled scheduled monitoring waits.
> - The UI also ignored other projected statuses for in-progress tasks.
> - This pull request requires an active task run for the In Progress
display.
> - Operators can see waits without changing execution or recovery
authority.

## Linked Issues or Issue Description

**What happened?**

An agent task still showed In Progress after its run ended with an
access failure and left a pending connection request. Stale execution
locks and saved lifecycle state could show the same false activity.

**Expected behavior**

An agent task shows In Progress only with a task-linked queued or
running run. Otherwise, it shows Blocked for recovery, In Review for a
pending response or review, Monitoring for a scheduled check, or Todo
for remaining work. Human ownership keeps its selected status.

**Steps to reproduce**

1. Create an agent-owned task with an in-progress lifecycle status.
2. End its run and retain a pending human request.
3. Read the task, its summary, and search results. Before this change,
they still show In Progress.

## What Changed

- Derive visible activity from company-scoped, task-linked runs in the
existing shared SQL projection.
- Project inactive tasks to existing waiting or todo states. Preserve
lifecycle status, locks, admission, and recovery.
- Make the shared UI resolver use the projection while preserving
explicit and optimistic status changes.
- Cover stopped runs, stale locks, human waits, company isolation,
monitoring, filters, counts, search, and UI labels.
- Document the presentation rule in the product and execution contracts.

## Verification

- Red before the server fix: 7 new regression cases failed because they
returned in_progress. The 10 existing cases passed.
- Green after the server fix: 20 cases passed in
issue-display-status.test.ts, using embedded Postgres and real task
APIs/search. Seven nearby active-question cases also passed.
- Review regression: dismissed requests, historical questions, and
returned review work each failed before the follow-up fix. All three now
pass using the existing active-interaction rule and pending review
state.
- Red before the UI fix: 4 label cases failed. Five additional safety
cases caught stale projections hiding explicit transitions.
- Green after the UI fix: 43 tests passed across
task-status-presentation, issue-filters, and issue-detail-subissues.
- pnpm -r typecheck passed. All UI token gates and synchronization
checks passed.
- pnpm build passed. Server typecheck and build passed again after the
review fixes.
- Full CI passed on 45c4ababc5, including
typecheck, build, general/serialized tests, Runner tests, and browser
checks. The final rollup has 55 successful checks, one neutral check,
and three configured skips.
- The local pnpm test:run command passed all 1,931 chat integration
tests. Its remaining duplicate full-suite run was stopped once full CI
passed on the same commit. This is not a claim that the complete local
command finished.
- Greptile reviewed the final commit at 5/5. Both prior findings have
regression coverage and all review threads are resolved.
- Live acceptance at commit 45c4ababc5: started a fresh isolated local
instance, created an inactive agent task, and saved a pending human
request. API reads changed from Todo to In Review. An initial readiness
probe ran before startup finished; the doctor then verified the exact
serving revision before acceptance. Chrome showed In Review in the task
header, breadcrumb, and sidebar. Stored lifecycle status remained
in_progress. The instance was stopped after verification.
- The reported stopped state was inspected in the live UI. The fix is
not deployed there. Local API tests reproduce the failure shape without
replaying the real deployment task.

## Risks

- This changes visible status and display-status filter membership for
inactive agent tasks. Stored lifecycle filters keep their existing
meaning.
- The projection uses existing indexes on task runs, recovery actions,
and interactions. It adds no worker, timer, schema change, or execution
action.
- A queued run counts as active admission. Human-owned tasks retain
explicit ownership status.

## Model Used

- OpenAI GPT-6 through Codex, with reasoning, repository tools, and code
execution. A more specific model ID and context-window size are not
exposed in this session.

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have searched GitHub for duplicate or related PRs and linked
them above
- [x] I have either (a) linked existing issues with `Fixes: #` / `Closes
#` / `Refs #` OR (b) described the issue in-PR following the relevant
issue template
- [x] I have not referenced internal/instance-local Paperclip issues or
links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip`
URLs)
- [x] My branch name describes the change (e.g. `docs/...`, `fix/...`)
and contains no internal Paperclip ticket id or instance-derived details
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [x] All Paperclip CI gates are green
- [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups
- [x] I will address all Greptile and reviewer comments before
requesting merge

---------

Co-authored-by: Paperclip <noreply@paperclip.ing>
2026-11-06 07:59:38 -06:00
DottaandPaperclip 70d23612dd fix: offer Interrupt when queued-message steering is unavailable (#19450)
## Thinking Path

> - Paperclip lets people manage work performed by AI agents.
> - Task chat saves follow-up messages while an agent runs.
> - A native runner can accept Steer only after an active provider turn
exists.
> - During preparation, or with an unsupported provider, the queue
showed a disabled Steer button and no delivery action.
> - The server also rejected Interrupt for ordinary native queues.
> - This change offers an explicit Interrupt fallback and uses the
existing cancellation and admission path.
> - People can send their saved messages while Stop confirmation,
cleanup, and execution gates remain enforced.

## Linked Issues or Issue Description

Related: #15865 covers mixed legacy queues. #15030 covers steering
acknowledgements. This change covers native queues without available
steering.

**What happened?**

A queued message had a disabled Steer button while the native runner was
still preparing. Clicking it did nothing. The server returned HTTP 409
for an explicit Interrupt request against the same native queue.

**Expected behavior**

Offer Steer when the provider can accept same-turn input. Otherwise
offer Interrupt, labeled with its actual effect. Preserve saved messages
until the previous execution stops and normal admission accepts the
successor.

**Steps to reproduce**

1. Start a task with the Paperclip Runner adapter.
2. Submit a follow-up while the run is preparing, before its provider
turn opens.
3. Observe the disabled Steer button above the composer.
4. With this change, click Interrupt. The existing Stop path cancels the
previous execution and submits the saved queue through normal admission.

**Paperclip version or commit**

Reproduced locally on master at 523818ea9b. The branch is rebased on
2f9d3d43c3.

## What Changed

- Offer Interrupt for unavailable or unsupported native steering when
the parent supplies an interrupt callback.
- Keep Steer for an available provider turn.
- Accept explicit Interrupt for a deferred native queue and record its
run target.
- Bind native continuation to the exact Interrupt queue, run, actor, and
cancellation receipt. This lets one click send the messages after Stop
completes.
- Add component, task-thread, real PostgreSQL route, and continuation
authorization regressions.
- Close the route fixture database pool before disposing its PostgreSQL
instance.
- Document the fallback and its Stop and admission requirements.

## Verification

- Red: two component cases failed because Interrupt was absent. Two
route cases returned HTTP 409, `This queue does not support
interruption`, before the repair.
- Red: stronger delivery assertions also caught `send_predates_stop`
after the first repair. The admission fix covers both the freshness
exception and later eligibility check.
- Green: both route regressions now wait for preparation settlement,
then deliver both saved messages exactly once without a second click.
The complete route suite passes 119 tests. The complete continuation
suite passes 376 tests, including wrong actor, queue, target, and
missing-receipt cases.
- UI: task-thread and queued-message suites pass 394 tests, with one
existing skip. The issue-page suite also passes (the earlier three-suite
run passed 644 tests before the final three UI cases).
- Token gates and `git diff --check` pass.
- Full workspace build and low-memory typecheck pass. The initial
typecheck caught a missing `membershipRole` in an unrelated fixture; the
rebase picked up the correction already on master, and the complete
typecheck then passed.
- The full local `pnpm test:run` passed all six chat shards (1,931
tests). It was stopped during general-server validation after the final
commit passed all PR CI gates. The complete local suite is not claimed
as a pass.
- Earlier route-suite teardown timed out with an open database pool.
Closing that pool fixed teardown; the complete route suite then passed.
- All final-head CI gates pass: 52 successful checks and two intentional
skips. Greptile is 5/5 on the same head with no unresolved review
threads.

## Risks

Interrupt stops the previous execution and starts a successor; it is a
different action from same-turn steering. The UI labels that action
explicitly. Cleanup or execution gates can keep the messages queued.
Existing company access, board permissions, queue revision, run target,
cancellation proof, and admission checks remain in place. No schema
migration is needed.

## Model Used

OpenAI Codex (GPT-6), with reasoning, tool use, and code execution. The
exact model ID and context window are not exposed by this client.

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have searched GitHub for duplicate or related PRs and linked
them above
- [x] I have either (a) linked existing issues with `Fixes: #` / `Closes
#` / `Refs #` OR (b) described the issue in-PR following the relevant
issue template
- [x] I have not referenced internal/instance-local Paperclip issues or
links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip`
URLs)
- [x] My branch name describes the change (e.g. `docs/...`, `fix/...`)
and contains no internal Paperclip ticket id or instance-derived details
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [x] All Paperclip CI gates are green
- [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups
- [x] I will address all Greptile and reviewer comments before
requesting merge

---------

Co-authored-by: Paperclip <noreply@paperclip.ing>
2026-11-06 07:11:38 -06:00
DottaandPaperclip 275b334fc5 fix(workspaces): skip redundant repository admission snapshots (#19444)
## Thinking Path

> - Paperclip manages AI agents and their execution state.
> - Remote workspace admission must preserve files before execution
starts.
> - Admission saved the entire workspace once per registered repository
on every run.
> - Existing snapshot receipts can prove that validated repositories are
already saved.
> - This change uses those receipts and saves new repositories once per
admission batch.
> - It also preserves fresh configuration metadata and reports actual
workspace reuse.

## Linked Issues or Issue Description

**What happened**
Remote follow-up runs uploaded an unchanged workspace for each
registered repository before starting the provider. Configuration
persistence also overwrote new evaluation metadata, and freshness logs
could claim replacement when the same workspace was reused.

**Expected behavior**
Validate existing repositories without uploads when a committed snapshot
covers their descriptors. Save acquired repositories before publishing
ready receipts. Retain current evaluation metadata and report the actual
workspace outcome.

**Steps to reproduce**
Use a remote workspace with two registered repositories. Prepare it,
then admit a follow-up run. Observe repository snapshot operations
despite unchanged repositories. The regression tests exercise this with
real Postgres, Git, and separate sandbox directories.

**Environment**
Server remote workspace admission at commit
c0214826b3. Related work: #19374 handles
interrupted clone staging; this change handles snapshot admission cost.

## What Changed

- Skip repository saves when the committed snapshot covers the validated
descriptor.
- Save all repositories in one admission snapshot before publishing
ready receipts.
- Retain descriptor coverage only when the new archive contains the
checkout. Drop deleted checkout coverage so admission can acquire it
again.
- Restore `needs_repair` status for failed batch saves and retry failed
uploads.
- Let fresh preparation metadata override stale reserved metadata while
preserving storage authority.
- Report actual reuse when freshness policy requested replacement.
- Add regression coverage and fix an existing routine user fixture
missing its membership role.

## Verification

- Red: original code fails unnecessary-snapshot, evaluation-metadata,
and reuse-message regressions.
- Green: 517 affected tests across six suites before the final coverage
correction. After that correction, all 102 remote workspace/concurrency
tests and 96 archive tests pass. Imported-repository, deleted-checkout,
and upload-retry cases pass.
- Additional red/green: deleted checkout coverage fails before the fix
and passes after it. All 96 archive tests pass, including manifest
digest and size bounds.
- `pnpm -r typecheck`, `pnpm build`, and `pnpm check:token-gates` pass
locally.
- All final-head CI verification jobs pass, including the aggregate `ci
/ verify` check. Greptile gives the final head 5/5.
- The monolithic local `pnpm test:run` passed all six chat shards and
continued through general server tests. It was stopped after final-head
CI passed; it did not complete locally. The targeted local regressions,
affected suites, typecheck, and build completed successfully.

## Risks

Snapshot receipts must refer to committed bytes. Legacy receipts require
one conservative save. Failed uploads must not publish repository
readiness. Replacement-class drift still retains the original
configuration for an explicitly reused workspace.

Existing directories with damaged or missing Git metadata still require
repair. Master and this PR both validate those directories without
cloning over them, preserving any surviving user files. Clearing a
snapshot descriptor would not change that path. Complete directory
deletion is different: this PR clears coverage so normal acquisition can
clone it again.

## Model Used

OpenAI gpt-6.1-sol through Codex. Used reasoning, repository inspection,
code editing, and local execution. The host does not expose the context
window size.

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have searched GitHub for duplicate or related PRs and linked
them above
- [x] I have either (a) linked existing issues with `Fixes: #` / `Closes
#` / `Refs #` OR (b) described the issue in-PR following the relevant
issue template
- [x] I have not referenced internal/instance-local Paperclip issues or
links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip`
URLs)
- [x] My branch name describes the change (e.g. `docs/...`, `fix/...`)
and contains no internal Paperclip ticket id or instance-derived details
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [x] All Paperclip CI gates are green
- [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups
- [x] I will address all Greptile and reviewer comments before
requesting merge

---------

Co-authored-by: Paperclip <noreply@paperclip.ing>
2026-11-06 07:08:59 -06:00
DottaandPaperclip 21d2a577bb feat: show and change routine responsible users (#19128)
## Thinking Path

> - Paperclip helps people manage AI agents and their work.
> - Routines create tasks for repeated work.
> - Each routine has a responsible person.
> - The Overview did not show this person or permit a change.
> - People need to see who will be responsible for automatic tasks.
> - This pull request adds a small name picker beside Default agent.
> - Authorized people can adopt a routine or transfer it to an active
company member.

## Linked Issues or Issue Description

**What existing behavior does this improve?**

The routine Overview and the routine update API.

**Subsystem affected**

UI, server, and shared contracts.

**Current behavior**

The routine stores a responsible user. The Overview does not show that
person. The update API cannot change that person.

**Proposed behavior**

Show Responsible user beside Default agent. Click the name to search
active company members. Save only the new person and the current
revision ID.

**Reason and benefit**

People can see who owns future automatic tasks. An authorized person can
adopt a routine without making a new routine.

**Breaking changes**

The detail response adds an optional actor-specific field. The update
API adds an optional responsible user ID. Existing requests keep their
current behavior.

Related: #17368 covers local Board ownership migration. This change adds
the routine control and explicit transfer.

## What Changed

- Show a quiet, searchable person picker beside Default agent.
- Explain that automatic tasks use this person. Manual runs use the
person who starts them.
- Permit human operators with `tasks:assign`, instance administrators,
and local operators to transfer responsibility.
- Check active company membership inside the update transaction.
- Save a revision and record the old and new person in the activity log.
- Keep existing task responsibility and ownership during revision
restore.
- Show errors for failed saves and stale revisions.
- Add tests for permissions, company boundaries, transfers, inheritance,
and picker states.
- Keep the picker disabled until saved data is refreshed. Refresh the
activity list after a transfer.
- Capture the actual previous person under the update row lock for the
activity record.
- Use shared query error handling and retain cached people during a
connection failure.

## Verification

- Focused checks cover 145 tests in 5 files. The first post-fix run
passed 144 tests. One existing Fireflies route test timed out during the
first import while the UI typecheck also ran. The same test passed in
the pre-fix run. The isolated route suite then passed all 21 tests with
no source change.
- The new tests reproduce slow detail refreshes, activity refresh, and
two concurrent transfers without a base revision. The concurrency test
uses PostgreSQL row locks.
- UI and server TypeScript checks passed at commit `1df9587eb`.
- The UI production build passed for the updated head.
- The branch includes master through `26391707f`.
- Design token gates, query-error policy, and Git whitespace checks
passed. The query-error policy reports zero findings.
- Local browser checks passed on desktop and mobile for the initial
feature commit. Search, selection, reload persistence, and revision
creation passed. No page errors or horizontal overflow were found. The
follow-up does not change the normal layout.
- Earlier full local checks could not finish: Cargo was absent, and
concurrent full test/build checks exceeded the 8 GiB memory limit. These
attempts are not passes.
- The first CI run failed on two error-rendering policy findings. That
failure is fixed locally. The three findings from the first Greptile
review are fixed and their threads are resolved.
- Greptile reviewed `1df9587eb2d3e034c2769b1f6955ac52323c95bb` and
scored it 5/5. It confirms all three prior findings are addressed. There
are no open review threads.
- [CI attempt
1](https://github.com/paperclipai/paperclip/actions/runs/42046369415/attempts/1)
passed 53 checks. The server 8/12 shard failed only because the existing
`history-http` runtime fixture did not become ready within 10 seconds
(99 refused connections). The fixture and runtime source are unchanged
from the merged master. That case passed locally on the same PR head
with no source change. Its full 75-test suite also passed locally. The
cause of the CI failure remains unknown.
- [CI attempt
2](https://github.com/paperclipai/paperclip/actions/runs/42046369415/attempts/2)
passed on `1df9587eb`: 54 successful checks, 3 skipped, and 1 neutral.
No failed or pending checks remained. The original fixture-readiness
failure remains recorded above.
- A later review found that viewers with an explicit `tasks:assign`
grant could see an editable picker even though writes were denied.
Commit `8b95ee707` now mirrors active-membership and viewer restrictions
in the GET capability flag. Instance-admin and local-operator behavior
is preserved.
- Three membership regressions failed on the incorrect editable flag
before the fix. After the fix, all 43 routine-route and company-access
cases passed (`--testTimeout 60000` accommodated this sandbox's cold
route imports; no repository timeout was changed). The first pre-fix run
timed out during the cold import in one case; the second pre-fix run
reproduced all three assertion failures.
- Layered server typechecking and whitespace checks passed after the
permission fix.
- [Fresh
CI](https://github.com/paperclipai/paperclip/actions/runs/42057752313)
passed on `8b95ee7075417527687b4a86cbaf63ba87408364` without a retry.
Greptile reviewed this exact head, scored it 5/5, and added no new
findings. All four review threads are resolved. The security status is
also successful.
- The separate Paperclip Review check is still queued because its
assigned review worker requires runtime recovery. This is the remaining
check before completion; the CI workflow itself passed.

## Risks

- A transfer changes the person used for future automatic tasks.
Existing tasks keep their current person.
- Only people can transfer responsibility. The server checks the
permission again on every write.
- A stale revision rejects the save. The user must reload before
retrying.
- No database migration is required.

## Model Used

OpenAI Codex, based on GPT-6, with reasoning, tool use, and code
execution. The exact runtime model ID and context window are not exposed
to this session.

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have searched GitHub for duplicate or related PRs and linked
them above
- [x] I have either (a) linked existing issues with `Fixes: #` / `Closes
#` / `Refs #` OR (b) described the issue in-PR following the relevant
issue template
- [x] I have not referenced internal/instance-local Paperclip issues or
links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip`
URLs)
- [x] My branch name describes the change (e.g. `docs/...`, `fix/...`)
and contains no internal Paperclip ticket id or instance-derived details
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [ ] All Paperclip CI gates are green (CI passed; separate Paperclip
Review check pending)
- [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups
- [x] I will address all Greptile and reviewer comments before
requesting merge

---------

Co-authored-by: Paperclip <noreply@paperclip.ing>
2026-11-06 05:47:30 -06:00
DottaandClaude Opus 5.5 8c578668b8 fix(heartbeat): start new queued runs promptly after restart and name the wait (#19431)
## Thinking Path

> - Paperclip is the open source app people use to manage AI agents for
work
> - The heartbeat queue starts queued agent turns. Restarts and deploys
happen often.
> - After a restart, new queued turns waited minutes before they
started. The task showed only "Queued", with no reason.
> - The cause is startup order. The queued-run dispatch worker registers
only after many unrelated first passes finish one after another: tool
reviews, delivery workers, the terminal workspace sweep, native restart
recovery, and residual and issue recovery.
> - The server binds its listener before this recovery, and
`/api/health` answers during it. A deployment can route traffic to the
new server for minutes before queued work starts.
> - This pull request starts queued turns that never executed as soon as
plugin workers and adapters are loaded. It also names the wait while the
server starts, recovers, or shuts down.
> - The benefit is that tasks resume quickly after a restart and show a
visible reason while they wait.

## Linked Issues or Issue Description

**What happened?**
On a hosted instance, the server restarted twice for deploys. Both
times, queued runs on idle agents started about 3.5 to 4 minutes after
the restart. Before the restart, the runs also waited about 5 minutes
while the deploy drained the old server. During the wait after the
restart, the execution presentation showed `phase: queued`, `label:
"Queued"`, `cause: null`.

**Expected behavior**
Queued work resumes automatically and quickly after a restart. While it
waits, the task shows a reason.

**Steps to reproduce**
1. Start a task drain (`POST /api/instance/task-drain`). Assign issues
to idle agents. The runs stay queued.
2. Stop the server (SIGTERM) and start it again.
3. Make any startup first pass slow (a large instance does this
naturally). Queued runs start only after every earlier startup pass
finishes.

**Paperclip version or commit**
master at 7e3caa7bac.

**Deployment mode**
Hosted Railway deployment with fleet deploy drain. Reproduced locally
with embedded PostgreSQL and an injected 20-second startup step.

## What Changed

- `heartbeat/queue.ts`: add `resumeFreshQueuedRunsAtStartup`. It starts
queued runs on agents with no run left `running` and no queued retry or
continuation (`started_at`, `retry_of_run_id`,
`process_loss_retry_count`, `continuation_attempt`). Every run still
passes the ordinary per-agent claim and dispatch gates, and scheduling
suppression (including the task drain) still applies.
- `heartbeat.ts`: expose it. Count it as a pending wake, like
`resumeQueuedRunsAfterDrain`, so drain status and upgrade readiness see
it.
- `index.ts`: run that pass at startup after plugin workers and external
adapters load. It does not wait for the unrelated startup first passes.
It skips while a drain, warm standby, or shutdown is active. Log when it
completes and when the full queued-run pass completes, with process
uptime, so a hosted restart shows both timings.
- `execution-projection.ts`: while the server is `starting`,
`recovering`, or `draining` (shutdown), a queued run shows **Waiting for
server restart** (cause `server_restarting`) with a next action. A task
drain keeps its **Waiting for maintenance** reason.
- `doc/execution-semantics.md`: describe the startup fast path and the
new presentation.
- The full queued-run pass, its position after native restart recovery,
and the drain behavior are unchanged.

## Verification

- Red, then green, local restart with a 20-second injected startup step
(embedded PostgreSQL, three process agents, runs queued under a task
drain, SIGTERM, restart):
- Before: the listener bound at 09:41:50.6. Runs started at 09:42:10.8,
20.2 s later, after the slow step ended.
- After: runs started 0.2 to 0.3 s after the listener bound, while the
slow step still ran. Each original run executed once.
- During the before run, `GET /api/issues/:id/execution` showed `Waiting
for server restart` / `server_restarting` until dispatch.
- Red, then green: `execution-projection.test.ts` restart-phase cases
failed on the old code (`label: "Queued"`, `cause: null`) and pass now.
- New `heartbeat-startup-fresh-dispatch.test.ts` (real PostgreSQL): a
fresh run starts; an agent with a `running` row from the previous
process and an agent with a queued retry stay queued; nothing starts
while a task drain is active.
- `npx vitest run` for the new test, `heartbeat-task-drain*.test.ts`,
`execution-projection*.test.ts`, `startup-recovery-timing.test.ts`,
`heartbeat/queue.test.ts`, `liveness.test.ts`: 132 passed.
- `npx tsc --noEmit -p server/tsconfig.json` passed.

## Risks

- New queued runs can start before native restart recovery finishes. The
fast path excludes any agent with a `running` row or a queued retry or
continuation, and the claim checks still enforce issue ownership,
predecessor cleanup, budgets, pauses, and concurrency. A new wakeup
during startup already starts runs at this point, so this adds no new
class of early execution.
- The drain is unchanged. It still holds new runs while the deploy waits
for in-flight runs (the Cloud wait budget is at most 5 minutes). This PR
does not change Cloud.
- The new label depends on the process-local startup phase. It shows
only on the process that is restarting.

> For core feature work, check [`ROADMAP.md`](ROADMAP.md) first and
discuss it in `#dev` before opening the PR. Feature PRs that overlap
with planned core work may need to be redirected — check the roadmap
first. See `CONTRIBUTING.md`.

## Model Used

- Claude Opus 5.5 (`claude-opus-5-5`), Anthropic, via Claude Code with
tool use (shell, file edits, local server runs). Extended reasoning
enabled.

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have searched GitHub for duplicate or related PRs and linked
them above
- [x] I have either (a) linked existing issues with `Fixes: #` / `Closes
#` / `Refs #` OR (b) described the issue in-PR following the relevant
issue template
- [x] I have not referenced internal/instance-local Paperclip issues or
links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip`
URLs)
- [x] My branch name describes the change (e.g. `docs/...`, `fix/...`)
and contains no internal Paperclip ticket id or instance-derived details
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [ ] All Paperclip CI gates are green
- [ ] Greptile is 5/5 with no open P2s, recommendations, or follow-ups
- [x] I will address all Greptile and reviewer comments before
requesting merge

🤖 Generated with [Claude Code](https://claude.com/claude-code)

Co-authored-by: Claude Opus 5.5 <noreply@anthropic.com>
2026-11-06 04:00:42 -06:00
DottaandClaude Opus 5.5 7e3caa7bac fix(tree-control): resume work a pause gate refused after release (#19421)
## Thinking Path

> - Paperclip is the open source app people use to manage AI agents for
work.
> - The board can pause an issue tree. A pause stops work. Resume or
release must continue that work once.
> - PR #19394 made release re-dispatch a run that a pause Stop
cancelled.
> - That rule covers only a run that an operator Stop ended and that the
hold snapshot named.
> - A scheduled retry that comes due during a pause is not stopped. The
dispatch gate cancels it with `issue_paused`. The release did not see it
as owed work, so the task stalled with no run.
> - This pull request makes every gate that refuses work for a pause
record the covering hold. Release then re-dispatches that work exactly
once.
> - The benefit is that a paused task with a parked retry or a queued
run continues after release, with no manual wake.

## Linked Issues or Issue Description

Refs #19394

**What happened?**
A child task had a `workspace_busy` scheduled retry. The board paused
the parent tree. The retry came due during the pause. The
scheduled-retry gate cancelled it with `issue_paused` ("Scheduled retry
suppressed because the issue is held by an active subtree pause hold").
The board released the hold. Four minutes later the child was still
`in_progress` with no run, no execution blocker, and no new activity.

**Expected behavior**
Release (or `mode: "resume"`) re-dispatches the refused work exactly
once. No reconciliation and no user message are necessary.
Stranded-issue recovery does not add a second run.

**Steps to reproduce**
1. Give an assigned child task a parked `workspace_busy` scheduled
retry.
2. Pause the parent tree.
3. Let the retry come due while the pause is active. The gate cancels it
with `issue_paused`.
4. Release the pause. No run starts for the child.

**Paperclip version or commit**
master at 4d49a31286 (includes #19394).

**Agent adapter(s) involved**
Not adapter-specific (core bug).

## What Changed

- `issue-tree-control.ts`: add `ISSUE_PAUSED_ERROR_CODE` and
`pauseSuppressionResult()`. A gate records `treeHoldSuppression: {
holdId, rootIssueId }` on a run that it refused for a pause.
- `findOwedPauseResume` now treats the latest run as owed when it is an
`issue_paused` cancellation under a pause hold. It uses the recorded
hold. For an unmarked run (a scheduled retry cancelled before this
change), it uses a snapshot pause that was active at cancellation. The
operator Stop rule does not change.
- Scheduled-retry gate (`run-dispatch/adapters/postgres.ts`,
`cancelSuppressedRetryInTx`): locks the pause row `FOR SHARE` and
records the covering hold. A concurrent release either sees the refusal,
or the retry sees no pause and runs normally.
- Queued-run claim gate (`heartbeat/queue.ts`): cancels with
`issue_paused` and the hold marker, after the agent start lock is
released. Before, the cancel re-entered that lock from inside it, and
the agent's queue stalled until the 30-second stale-lock timeout. After
the refusal is saved, the gate re-checks the hold and resumes the task
itself if release already finished (`resumeIfPauseAlreadyReleased`).
- Release (`issue-tree-resume.ts`, route): revisits the snapshot members
and every task with a run refused for that hold, also when `wakeAgents`
is set. This covers tasks created under the tree after the snapshot and
tasks moved out before release.
- `packages/db`: partial index
`heartbeat_runs_tree_hold_suppression_idx` (migration 0436, `CREATE
INDEX CONCURRENTLY`, registered as a top-level migration) for that
lookup.
- Docs: `doc/execution-semantics.md` (gate-refused work, race handling,
non-assignee and pre-fix scope) and `doc/DATABASE.md` (index).

## Verification

- Red before the fix, green after: `pnpm --filter @paperclipai/server
exec vitest run src/__tests__/issue-tree-pause-resume-run.test.ts` (21
tests).
- "resumes a parked retry the pause suppressed exactly once after
release / resume / legacy": before, `expected [] to have a length of 1`
(no resumed run). After, one `issue_tree_resumed` run with
`interruptedRunId` = the suppressed retry, no execution blocker, and the
task finished. `reconcileStrandedAssignedIssues` added no run during the
hold or after release.
- "resumes a queued run the claim gate refused during the hold exactly
once": before, the test timed out at 15 s (start-lock re-entry). After,
the run is cancelled with `issue_paused` and the hold marker, and
release re-dispatches it once.
- "resumes a refused retry on a task moved out of the paused tree before
release" and "... on a task outside the snapshot when release also wakes
members": review findings, one resume each.
- "leaves a due retry parked when the pause is released while the gate
refuses it": the test waits until the gate blocks on an uncommitted
release. The retry is not cancelled and runs once. Without the `FOR
SHARE` lock the gate does not wait and the test fails.
- "resumes work a gate refused after the release that should have
resumed it had finished": the late-refusal re-check resumes once, and a
repeated check does not dispatch again.
- "does not resume a paused-code cancellation that no pause hold
covered": negative case.
- Related suites pass locally: `src/__tests__/issue-tree*`,
`src/modules/run-dispatch`, `src/services/heartbeat/queue.test.ts`,
`heartbeat-dependency-scheduling`, `heartbeat-workspace-busy`, and
`packages/db` `client.test.ts`.
- I did not run a live staging check here. Staging APIs are not
reachable from this environment.

## Risks

- Migration 0436 adds a partial index on `heartbeat_runs`. It is built
concurrently and covers only cancelled runs with the marker, so it is
small.
- The scheduled-retry gate now takes a `FOR SHARE` row lock on the pause
hold before it cancels. Release updates that row, so the two serialize
briefly. Release does not lock issues or runs, so the lock order cannot
deadlock with the gate's issue-then-run locks.
- The queued-run claim gate now records `issue_paused` in place of the
generic `cancelled`. Stranded recovery already classifies `issue_paused`
as non-retryable. The pause resume owns that work, so recovery does not
add a second run.
- Scope limits (documented): a non-assignee run refused by a pause is
not replayed, the same as non-assignee wakes that admission drops during
a hold. Among pre-fix rows, only scheduled retries carry `issue_paused`,
so only those fall back to the snapshot. A pre-fix row whose hold is
already released does not self-recover; the staging task that showed
this bug needs one manual wake, or a new pause and release.

> For core feature work, check [`ROADMAP.md`](ROADMAP.md) first and
discuss it in `#dev` before opening the PR. Feature PRs that overlap
with planned core work may need to be redirected — check the roadmap
first. See `CONTRIBUTING.md`.

## Model Used

- Claude Opus 5.5 (Anthropic), model ID `claude-opus-5-5`, used through
Claude Code with tool use (shell, file edits, test execution).

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have searched GitHub for duplicate or related PRs and linked
them above
- [x] I have either (a) linked existing issues with `Fixes: #` / `Closes
#` / `Refs #` OR (b) described the issue in-PR following the relevant
issue template
- [x] I have not referenced internal/instance-local Paperclip issues or
links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip`
URLs)
- [x] My branch name describes the change (e.g. `docs/...`, `fix/...`)
and contains no internal Paperclip ticket id or instance-derived details
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [x] All Paperclip CI gates are green
- [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups
- [x] I will address all Greptile and reviewer comments before
requesting merge

🤖 Generated with [Claude Code](https://claude.com/claude-code)

---------

Co-authored-by: Claude Opus 5.5 <noreply@anthropic.com>
2026-11-06 03:03:15 -06:00
Devin FoleyandClaude Opus 5.5 2c7ee84221 fix(server): stop reporting work cancelled by a disconnected client (#19037)
A route that aborts its storage read when the response closes rejects with
AbortError after the client has gone. The error handler reported that
cancellation as a server crash. Skip the error sinks for an AbortError when
the response was closed before it finished; report it otherwise.

Fixes PAPERCLIP-BACKEND-5A

Co-Authored-By: Claude Opus 5.5 <noreply@anthropic.com>
2026-11-06 00:39:27 -08:00
DottaandPaperclip c1d567ff6a fix(workspaces): isolate archived nested Git reconstruction (#19409)
## Thinking Path

> - Paperclip is the open source app people use to manage AI agents for
work.
> - Durable workspace import must preserve archived task files and Git
history.
> - A saved nested checkout can be a linked worktree whose branch
belongs to its old absolute path.
> - Archived import reconstructs that checkout in a new scratch
directory.
> - Ordinary linked recovery rejects the old branch at that new path. It
can also write into a cache used by other import workers.
> - This pull request reconstructs archived nested checkouts as private
standalone repositories.
> - Each import preserves saved files and extra history without changing
shared worktree registrations or branches.

## Linked Issues or Issue Description

**What happened?**
Archived workspace import fails when a saved nested linked checkout has
a branch owned by the old path. The new scratch path fails the
linked-worktree ownership check. The existing cache lock is
process-local, so separate import processes also share mutable Git state
without a common lock.

**Expected behavior**
Archived import must create an independent portable copy of the saved
checkout. It must retain the saved commit, branch name, staged edits,
working files, ignored recovery files, settings, and extra saved
commits. It must keep the source cache unchanged and enforce source
authorization.

**Steps to reproduce**
1. Create a managed nested linked checkout with an unpushed commit and
staged and unstaged edits.
2. Save an encrypted restore point, including ignored files and an extra
history tip.
3. Restore its saved contents under a different absolute workspace path.
4. Before this repair, the new path cannot adopt the branch owned by the
old path.

**Paperclip version or commit**
The real Git regression fails before the repair at `fc1f5f3052`. The
final branch includes the merged interrupted-upload and nested-source
authorization fix from #19396.

**Deployment mode**
Archived remote workspace migration with real Git repositories,
disposable PostgreSQL, and encrypted object storage. Local integration
tests use the filesystem storage provider.

Builds on merged #19402 and #19396. Related #19374 concerns interrupted
clone staging; it does not implement private archived reconstruction. No
duplicate open repair was found.

## What Changed

- Enable private repository reconstruction only for archived migration.
Ordinary linked recovery keeps its path ownership guard.
- Add an object-only source to the managed checkout owner. A verified
cache supplies only the saved commit and authenticated bundle
prerequisites through scoped fetches. The private copy includes no
unrelated task refs or objects, hard links, object alternates, or
current cache files.
- Fetch missing authenticated bundle prerequisites before importing a
saved bundle in both private reconstruction and ordinary linked
recovery. A pruned cache can use the approved remote; unavailable
history still blocks restore.
- Keep every authenticated restore point's extra commit under a private
ref in root and nested private copies so portable archive capture and
garbage collection retain it. Ordinary recovery keeps its existing
history and expiration rules.
- Share the verified, bounded ignore-file copy between root and nested
reconstruction. Sources remain unchanged.
- Retain source authorization before and after reconstruction and the
final source-row locks from #19396.
- Test concurrent private copies, source rejection, foreign task refs
and objects, ordinary linked prerequisite recovery, a real migration,
and cold restore after removing all original repositories. Test hard
links, oversized excludes, unsafe info paths, and replacement during a
descriptor read.

## Verification

- Final affected run: 292 tests pass across ten suites. These cover real
Git repositories, encrypted restore points, disposable PostgreSQL
migration, portable archives, the restore-point ledger, source
rejection, and concurrent copies.
- Full repository typecheck and build pass after the scoped-object
repair. Final server typecheck and full build also pass after
restricting preserved refs to archive mode.
- RED then GREEN: a linked checkout at a different path; a pruned bundle
prerequisite still available from the approved remote; foreign task refs
and objects entering the archive; root extra history disappearing after
cold restore; and archive-only refs blocking ordinary standalone
expiration.
- Two concurrent private copies retain the saved head, branch, staged
and unstaged edits, ignored recovery bytes, settings, and modes. Source
refs, index, worktree registrations, and working files remain unchanged.
- Delete the original checkout, cache, remote, and private copies after
portable capture. Cold restore retains the saved files and extra history
after garbage collection. No alternates or unrelated task objects
remain.
- Ordinary linked recovery retains its path ownership check and recovers
pruned prerequisites. New and existing ordinary standalone destinations
have no archive-only refs and remain eligible for expiration after
normal object cleanup.
- Unsafe exclude tests reject hard links, oversized files, nonregular
paths, info-directory substitution, and replacement during the
descriptor read. They preserve the target and replacement source bytes.
- Preserve the failed attempts: an initial migration fixture changed its
home after constructing the source path. Later expiration fixture
attempts used a filtered current-head tip, omitted the local-source
callback, or used cleanup that generated Git server-info files or left
packed unreachable objects. Correct those setup assumptions before the
actual regressions fail. Final affected suites pass.
- Two earlier local full-suite attempts were interrupted before editing
valid review findings. Neither is reported as a full-suite PASS.
Final-head full CI passes; review is 5/5 with no open findings.

## Risks

Archived imports use additional private disk space for independent Git
objects. Missing, changed, or unsafe sources still block import. The
repair does not weaken the default linked-worktree ownership check,
change stored formats, or update live provider state. The shared
checkout addition is optional and has no effect for existing callers
that do not supply an object source.

## Model Used

OpenAI GPT-6 in Codex, with code editing, tool use, and test execution.
The exact runtime model identifier and context-window size are not
exposed in this session.

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have searched GitHub for duplicate or related PRs and linked
them above
- [x] I have either (a) linked existing issues with `Fixes: #` / `Closes
#` / `Refs #` OR (b) described the issue in-PR following the relevant
issue template
- [x] I have not referenced internal/instance-local Paperclip issues or
links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip`
URLs)
- [x] My branch name describes the change (e.g. `docs/...`, `fix/...`)
and contains no internal Paperclip ticket id or instance-derived details
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [x] All Paperclip CI gates are green
- [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups
- [x] I will address all Greptile and reviewer comments before
requesting merge

---------

Co-authored-by: Paperclip <noreply@paperclip.ing>
2026-11-06 00:56:06 -06:00
Dotta 92452524f4 fix(server): recover authenticated empty retention checkpoints (#19417)
## Thinking Path

> - Paperclip is the open source app people use to manage AI agents for
work.
> - Ephemeral server enrollment must preserve existing task files.
> - Archived task directories can depend on encrypted retention
checkpoints.
> - A missing object blocks migration even when its authenticated
contents were exactly empty.
> - Metadata counters alone cannot prove that no saved files existed.
> - This change verifies the exact candidate against the original
encrypted key envelope before normal migration publication.
> - The benefit is lossless migration of this bounded case without
resetting task history or weakening ordinary restore.

## Linked Issues or Issue Description

**What happened?**
Migration stops at an archived empty directory when its retained
encrypted object is missing. The original encrypted key envelope still
authenticates the payload hash, byte length, company, workspace,
checkpoint ID, and generation.

**Expected behavior**
Administrative migration can reconstruct those exact original bytes when
storage confirms absence and every authenticated check passes. It must
keep missing nonempty, expired, corrupt, or ambiguous sources blocked.

**Steps to reproduce**
1. Capture and encrypt an empty task directory.
2. Retain its reference and encrypted key envelope.
3. Remove the old directory and storage object.
4. Run the normal remote workspace migration.

**Paperclip version or commit**
The regression fails before this change at `205ffcb606`. Related
preservation work is in #19396, #19402, and #19409. No duplicate open
fix was found.

**Deployment mode**
Administrative migration to external workspace storage. Tests use real
encryption, real filesystem storage, and disposable PostgreSQL.

## What Changed

- Let the encryption owner verify a candidate against the existing
scoped encrypted key envelope. Normal ciphertext validation keeps its
previous order and checks.
- Share the task-directory encoder with an exact empty payload
constructor.
- Add a default-off loader option for confirmed missing empty
checkpoints. Only the administrative migration caller enables it.
- Keep the original checkpoint reference and object unchanged. Publish
the recovered bytes through the existing snapshot and source-fence
owners.
- Reject forged counters, wrong identities, missing nonempty data,
present corruption, unreadable present objects, unknown absence, and
expiry.

## Verification

- Final affected run: all 238 tests pass across five crypto, snapshot,
retention, and migration suites. Full repository typecheck and build
pass; server typecheck and full build also pass after the cancellation
repair.
- RED then GREEN: exact missing-empty recovery and cancellation of a
stalled HEAD through the real storage-service boundary. Cancellation
retains the caller's original abort reason.
- Disposable PostgreSQL migration publishes a cold-restorable empty
archive. Archived status, task status, task binding, original reference,
and the absent original source stay unchanged. Replay keeps one
canonical snapshot.
- Negative cases reject forged empty counters, an authenticated
directory or file, every foreign identity field, expiry, present
corruption, unreadable present objects, unknown absence, and missing
nonempty data. Ordinary restore keeps its previous failure behavior.
- Initial verification retained one new fixture-path failure after 145
passes, and a typecheck rejected the fixture's widened schema literal.
Correct the fixture to use the returned staging path and its explicit
reference type. The final complete affected run passes.
- The new HEAD request runs only after a failed read with the
administrative option enabled. It uses the existing cancellation
contract and adds no polling or background work.
- Final-head full CI passes; review is 5/5 with no open findings. This
PR does not claim deployed enrollment or a live migration result.

## Risks

Recovery requires the original valid encrypted key envelope and an exact
format match. A format change or unavailable key continues to block
migration. Existing ciphertext hash, size, authentication, and ordinary
restore behavior remain enforced. This change has no schema,
provider-session, API, or UI contract changes.

## Model Used

OpenAI GPT-6 in Codex, with code editing, tool use, and test execution.
The exact runtime model identifier and context-window size are not
exposed in this session.

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have searched GitHub for duplicate or related PRs and linked
them above
- [x] I have either (a) linked existing issues with `Fixes: #` / `Closes
#` OR (b) described the issue in-PR following the relevant issue
template
- [x] I have not referenced internal/instance-local Paperclip issues or
links (only public GitHub references)
- [x] My branch name describes the change and contains no internal
Paperclip ticket id or instance-derived details
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [x] All Paperclip CI gates are green
- [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups
- [x] I will address all Greptile and reviewer comments before
requesting merge
2026-11-06 00:50:28 -06:00
DottaandClaude Opus 5.5 a4bb059f59 fix(heartbeat): retry transient sandbox provider lease refusals and explain the block (#19412)
## Thinking Path

> - Paperclip is the open source app people use to manage AI agents for
work
> - A task runs in an execution environment. A managed sandbox
environment gets a lease from a sandbox provider (for example Daytona)
before the agent starts.
> - When the provider answered sandbox create with a temporary error
(HTTP 502), the run failed as the generic `setup_failed`.
> - `setup_failed` is the fail-closed code for unknown setup errors. It
gets no automatic retry, so the task went to `blocked` at once. The task
showed only "Couldn't finish this attempt".
> - A user had to find and press Retry. The Retry then worked, which
shows that the failure was temporary.
> - This pull request classifies temporary provider refusals during
lease acquisition from structured fields. It retries them within the
existing bounded bootstrap budget, and it explains the block when the
retries are used up.
> - The benefit is that a short provider outage no longer stops a task.
When the outage continues, the task shows the cause and a Retry that
works.

## Linked Issues or Issue Description

**What happened?**
A task was assigned to an agent that uses a managed Daytona sandbox
environment. Sandbox creation returned `HTTP 502`, and the cleanup of
the provisional sandbox could not be confirmed. The run failed with
`setup_failed` and the error `Failed to acquire lease for environment
"Paperclip Sandbox" (sandbox): Daytona sandbox creation failed (HTTP
502); cleanup could not be confirmed for paperclip-create-…`. Three
seconds later the task was `blocked`. No automatic retry was scheduled.
The task showed no specific reason. A manual Retry started a new run
that completed normally.

**Expected behavior**
A temporary provider error (HTTP 5xx, 429, timeout) before the agent
starts must retry automatically with bounded backoff. The task must show
why it waits. If the retries are used up, the task must show the cause,
a next action, and a Retry that works on the first click.

**Steps to reproduce**
1. Configure an agent with a sandbox environment.
2. Make the provider return HTTP 502 on sandbox create.
3. Assign a task to the agent.
4. See that the run fails with `setup_failed` and the task goes to
`blocked` with no retry.

**Paperclip version or commit**
`master` at `612da1e8e0`.

## What Changed

- Plugin SDK: an `environmentAcquireLease` error now carries a closed
diagnostic envelope (HTTP status or a closed errno code) across the
worker RPC. It takes the status of the create call only, not of the
compensating cleanup lookup. The existing creation-cleanup ownership
envelope is unchanged. New module: `environment-acquire-error.ts`. The
resume diagnostic helpers are shared.
- Server: new `EnvironmentProviderUnavailableError` and code
`environment_provider_unavailable`. The environment run orchestrator
sets it as the cause of `lease_acquire_failed` only when structured
evidence shows a transient status (408, 425, 429, 500, 502, 503, 504, or
a closed connection errno). It never parses message text. Saved-sandbox
resume and stopped-worker refusals keep their own codes.
- Setup failure (`failRunSetup`): a fresh, pre-dispatch run records
`environment_provider_unavailable` with a `providerFailure` (phase
`startup`, retryability `transient`). The run uses the bounded bootstrap
retry (30 s, then 60 s). An accepted interaction continuation keeps its
own continuation retry, as for `plugin_worker_unavailable`.
- Recovery: the new code is registered with the other bootstrap codes.
It is not sent to the generic continuation retry. It does not create an
execution-reconciliation hold, because no provider work started. On
exhaustion the stranded notice has the title "Sandbox provider was
temporarily unavailable" and a specific next action.
- UI: `ProviderFailureNotice` labels the `sandbox` provider as "Sandbox
provider". The task notice shows the provider failure, "Paperclip will
retry automatically" while a retry is scheduled, and Retry after
exhaustion.
- Docs: `doc/execution-semantics.md` describes the policy and the
sandbox ownership rule.

## Verification

Red before the fix, green after the fix:

- `server/src/__tests__/heartbeat-process-recovery.test.ts` › "transient
sandbox provider refusal during lease acquisition":
- "retries automatically and runs exactly one successful successor
without user action": the real heartbeat. The lease runtime returns a
Daytona 502 once, then delegates. Before the fix: one `failed` run and
no successor. After the fix: one `scheduled_retry` successor with no
hold and a `retry_scheduled` presentation. After promotion, exactly one
successor succeeds.
- "explains the block with a working Retry once automatic retries are
used up": three refusals. The task is `blocked` with a "Sandbox provider
was temporarily unavailable" notice. The presentation is `{ state:
"failed", canRetry: true, providerFailure: { httpStatus: 502 } }`, and
no execution-reconciliation hold exists. One `requestTaskRetry` is
accepted, and its run succeeds.
- `server/src/services/heartbeat/run-completion.test.ts` › "routes a …
sandbox provider lease refusal through bounded bootstrap recovery": the
real orchestrator wrapping. Only the fresh, structured 502 is retried. A
message-only 502, a 400, a run after provider dispatch, and a retained
native run stay `setup_failed`.
- `packages/plugins/sdk/tests/environment-acquire-error.test.ts`: the
real worker RPC. The test checks the create status (not the 404 cleanup
lookup), the errno, no provider text, the unchanged cleanup envelope,
and that forged envelopes are rejected.

Commands:

```sh
pnpm --filter @paperclipai/plugin-sdk exec vitest run tests/environment-acquire-error.test.ts tests/environment-creation-cleanup.test.ts tests/environment-resume-error.test.ts
cd server && npx vitest run src/__tests__/heartbeat-process-recovery.test.ts src/services/recovery/ src/services/heartbeat/run-completion.test.ts src/services/heartbeat/retries.test.ts src/services/legacy-execution-recovery.test.ts src/services/task-interruption-presentation.test.ts src/services/task-retry.test.ts src/__tests__/environment-runtime.test.ts src/__tests__/heartbeat-retry-scheduling.test.ts
cd packages/plugins/sandbox-providers/daytona && npx vitest run
pnpm --filter @paperclipai/plugin-sdk typecheck && pnpm --filter @paperclipai/server typecheck
```

I did not run a live Daytona 502 on staging. Re-check on staging after
deploy (see Risks).

## Risks

- Sandbox leaks or double creation: each retry is a new run with a new
durable creation record and a new provider name
(`paperclip-create-<operationId>`). The failed attempt stays owned by
its own record, and the existing creation reconciler settles it. A retry
never reuses or abandons it. While a provisional sandbox waits for
reconciliation, up to two more sandboxes can be created for the same
task. This is the same as a manual Retry today.
- Plugins built with an older SDK do not send the envelope. Their
refusals stay `setup_failed`, which is the current behavior.
- An in-process error with `status`/`statusCode` 500–504 or a connection
errno during lease acquisition is now retried twice. The budget is
bounded and shared with the other bootstrap codes.
- An RPC timeout on the host side is not classified by this change.

> For core feature work, check [`ROADMAP.md`](ROADMAP.md) first and
discuss it in `#dev` before opening the PR. Feature PRs that overlap
with planned core work may need to be redirected — check the roadmap
first. See `CONTRIBUTING.md`.

## Model Used

- Claude Opus 5.5 (Anthropic), model ID `claude-opus-5-5`, used through
Claude Code as an agent with tool use (shell, file edits, test runs).
Extended reasoning was on.

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have searched GitHub for duplicate or related PRs and linked
them above
- [x] I have either (a) linked existing issues with `Fixes: #` / `Closes
#` / `Refs #` OR (b) described the issue in-PR following the relevant
issue template
- [x] I have not referenced internal/instance-local Paperclip issues or
links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip`
URLs)
- [x] My branch name describes the change (e.g. `docs/...`, `fix/...`)
and contains no internal Paperclip ticket id or instance-derived details
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [ ] All Paperclip CI gates are green
- [ ] Greptile is 5/5 with no open P2s, recommendations, or follow-ups
- [x] I will address all Greptile and reviewer comments before
requesting merge

🤖 Generated with [Claude Code](https://claude.com/claude-code)

---------

Co-authored-by: Claude Opus 5.5 <noreply@anthropic.com>
2026-11-06 00:08:44 -06:00
DottaandClaude Opus 5.5 612da1e8e0 test(server): drain throttled follow-up in busy recovered-source execution-control test (#19403)
## Thinking Path

> - Paperclip is the open source app people use to manage AI agents for
work
> - The server runs durable execution-control workers, which include the
workspace-recovery sweep
> - `execution-control-work.test.ts` has a test for a Retry that commits
during a busy recovered-source pass
> - This test fails intermittently in PR runs that do not touch it, so
it blocks unrelated PRs
> - The test assumed that one `settle()` pass always ends idle, but the
worker can correctly owe a throttled follow-up pass
> - This pull request makes the test drive fake time through that
throttle window while it waits for the sweep to finish
> - The benefit is a deterministic test that still proves every source
is visited and the worker becomes quiet

## Linked Issues or Issue Description

**What happened?**
`execution-control durable work > visits a newly committed earlier Retry
during a busy recovered-source pass, then becomes quiet` failed in 2 of
the last 250 failed `PR` workflow runs (jobs 127272079294 and
127206639630). Both failures were identical: `AssertionError: expected 1
to be +0` at `vi.waitFor` in `settle()`
(`execution-control-work.test.ts:146`). The test took about 6s, which is
the 5s `waitFor` limit plus overhead.

**Expected behavior**
The test passes on every run. Its result does not depend on runner
speed.

**Steps to reproduce**
1. Add a 300ms real-time delay in `registerExecutionControlWork` after
`await duty.run()` and before `await duty.next()`. This simulates slow
database I/O on a loaded runner.
2. Run `pnpm exec vitest run
src/__tests__/execution-control-work.test.ts -t "busy recovered-source
pass"` in `server/`.
3. The test fails 3 of 3 times with the same CI error.

**Root cause**
- `registerExecutionControlWork` lets a duty make one full pass per
`EXECUTION_RECONCILIATION_INTERVAL_MS` (15s), measured from the start of
the previous full pass.
- The released recovery jobs call `worker.wake()` when they finish. If a
wake arrives while the full pass is still reading its next deadline,
`hasPending()` stays true. The coordinator then keeps its idle-tracked
intent until the next permitted pass, up to 15s of fake time later.
- `settle()` advances fake time by 15s and then waits 5s in real time
for `idleWorkSnapshot().active === 0`. The full pass starts inside that
15s advance, so the follow-up is due after the window ends. The wait
then expires.
- On a fast machine the jobs usually finish after the deadline read, so
the test passes. On a slow runner the order changes, so the test fails.
- This is correct product behavior: the worker owes the follow-up pass.
The defect is in the test's timing assumption.

## What Changed

- In the busy recovered-source test, replace the bounded `settle()` loop
with a `vi.waitFor` that advances fake time by
`EXECUTION_RECONCILIATION_INTERVAL_MS` on each attempt. It waits until
every source was visited and no idle-tracked work is active.
- The test still calls `quiet(c)` after this, so it still asserts no
further scheduling and no database calls during the next 90s.
- The shared `settle()` helper is not changed, because `reschedules an
earlier deadline…` asserts an exact `nextWakeAt()` after `settle()`.

## Verification

- Red: with the 300ms delay injected (not committed), the test failed
3/3 times with the CI assertion.
- Green: with the same injection at 300ms (3 runs) and at 1000ms (1
run), all four recovered-source Retry tests pass.
- Without injection, the full `execution-control-work.test.ts` passed
5/5 times with 12 CPU-burner processes running.
- `pnpm exec vitest run src/__tests__/execution-control-work.test.ts` in
`server/`.

## Risks

- Low risk. This is a test-only change. The test still requires every
source to be visited, the worker to become idle, and then 90s of quiet.

## Model Used

- Claude Opus 5.5 (`claude-opus-5-5`), Anthropic, used through Claude
Code with tool use (shell, file edits, GitHub CLI). Default context
window. No extended thinking mode.

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have searched GitHub for duplicate or related PRs and linked
them above
- [x] I have either (a) linked existing issues with `Fixes: #` / `Closes
#` / `Refs #` OR (b) described the issue in-PR following the relevant
issue template
- [x] I have not referenced internal/instance-local Paperclip issues or
links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip`
URLs)
- [x] My branch name describes the change (e.g. `docs/...`, `fix/...`)
and contains no internal Paperclip ticket id or instance-derived details
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [ ] All Paperclip CI gates are green
- [ ] Greptile is 5/5 with no open P2s, recommendations, or follow-ups
- [x] I will address all Greptile and reviewer comments before
requesting merge

🤖 Generated with [Claude Code](https://claude.com/claude-code)

---------

Co-authored-by: Claude Opus 5.5 <noreply@anthropic.com>
2026-11-05 22:58:33 -06:00
DottaandClaude Opus 5.5 223687bbb9 test(server): size heavy chat-channel tests to their workload to stop timeout cascades (#19404)
## Thinking Path

> - Paperclip is the open source app people use to manage AI agents for
work
> - Chat channels connect GitHub, Slack, and other providers to tasks,
and `chat-channels.integration.test.ts` covers them against a real
embedded Postgres
> - Two parameterized tests do much more database work than the other
tests in the file, but they use the global 15s `testTimeout`
> - On a slow CI runner they time out. Vitest then keeps the timed-out
test body running, and that body breaks later, unrelated tests in the
same file
> - This failure blocks PRs that do not touch chat code
> - This pull request gives the two heavy tests a time budget that fits
their workload
> - The benefit is that a slow runner no longer turns one heavy test
into a cascade of 2–7 failures

## Linked Issues or Issue Description

**What happened?**
In run 42098299218 (job 127495756270, shard `General tests (chat
(3/3))`), 7 chat tests failed in two Vitest processes on a PR that
changed only unrelated test files:
- Process 1: `reactivates denied retry notices when authority is
restored during bounded pass` timed out at 15000ms. Then `… during
requester merge` failed with `A function to advance timers was called
but the timers APIs are not mocked`.
- Process 2: `preserves one current GitHub Retry across backlog_51` and
`… consumed_backlog_52` timed out at 15000ms. About 110 tests later,
three pre-run FIFO tests failed: `advances pre-run FIFO selection past a
suppressed page with microsecond timestamps (manual)` (`expected +0 to
be 1`), `retires an already-visible pre-run FIFO notice once without
publishing scheduler failures` (`expected [] to have a length of 1`),
and `retries a contended pre-run FIFO receipt before I/O and observes
cancellation after the lock releases` (`expected undefined to match
object { state: 'retry' }`).

**Expected behavior**
These tests pass on a slower runner. A timeout in one test does not
change the result of a different test.

**Steps to reproduce**
1. On `master`, in `server/`, run:
`pnpm exec vitest run src/__tests__/chat-channels.integration.test.ts -t
"GitHub Retry across (backlog_51|consumed_backlog_52)|advances pre-run
FIFO selection past a suppressed page|retires an already-visible pre-run
FIFO notice once|retries a contended pre-run FIFO receipt before I/O"
--testTimeout=1200`
2. The lower timeout simulates a slow runner. The two backlog tests time
out, and then the same three FIFO tests fail with the same assertions as
in CI. The `scoped` FIFO case passes, as it did in CI.
3. Run the same command without `--testTimeout`. All 6 tests pass.

**Root cause**
- The workload is large. `backlog_51` and `consumed_backlog_52` deliver
51–52 real inbound GitHub messages through the full delivery path.
`bounded pass` inserts and authorizes 100 rejected retry notices.
- CI timing data supports this. On passing runs these tests take
5.4–7.7s (backlog) and 3.6–5.3s (bounded pass), and lighter tests in the
same file take 0.5–1s. On the failing runner, the lighter tests were
2–3x slower (for example, `idle` took 1856ms instead of 500–680ms). This
put the heavy tests over 15s.
- When Vitest times out a test, it does not stop the test body. The body
keeps running while the next tests start:
- The unfinished backlog tests left 51+ `deferred_issue_execution`
inbound wakeups. The pre-run FIFO tests use unscoped, bounded passes
(`enqueueInboundWakeupPublications`, `processPendingPublications`). The
leftover rows filled those pages, so the new test's row was not reached.
- The unfinished `bounded pass` body later ran its `finally` block,
which calls `vi.useRealTimers()`. This disabled the fake timers that
`requester merge` had just installed.

## What Changed

- `preserves one current GitHub Retry across %s`: set an explicit 60s
timeout.
- `reactivates denied retry notices when authority is restored during
%s`: set an explicit 60s timeout. Increase the `bounded pass` wait for
its held 100-row reconciliation from 10s to 30s, so that the inner wait
does not become the new limit.
- The same file already uses explicit 20s, 25s, 30s, 40s, 60s, and 90s
budgets for other heavy tests. No product code changed.

## Verification

- Red: the reproduction command above fails on `master` with the CI
cascade. A tighter `--testTimeout=1600` on `reactivates denied retry
notices` also shows that later modes fail after `bounded pass` times
out.
- Green: the same reproduction command with this change (still
`--testTimeout=1200` for all other tests) passes 10/10 selected tests,
including the three FIFO tests.
- `pnpm exec vitest run src/__tests__/chat-channels.integration.test.ts
-t "GitHub Retry across|reactivates denied retry notices|pre-run FIFO"`:
46 passed.

## Risks

- Low risk. This is a test-only change. A real hang in these two tests
now fails after 60s instead of 15s. This is well inside the job limit.
- The cascade can still occur if one of these tests needs more than 60s.
That would mean a runner about 10x slower than a normal one.

## Model Used

- Claude Opus 5.5 (`claude-opus-5-5`), Anthropic, used through Claude
Code with tool use (shell, file edits, GitHub CLI). Default context
window. No extended thinking mode.

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have searched GitHub for duplicate or related PRs and linked
them above
- [x] I have either (a) linked existing issues with `Fixes: #` / `Closes
#` / `Refs #` OR (b) described the issue in-PR following the relevant
issue template
- [x] I have not referenced internal/instance-local Paperclip issues or
links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip`
URLs)
- [x] My branch name describes the change (e.g. `docs/...`, `fix/...`)
and contains no internal Paperclip ticket id or instance-derived details
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [ ] All Paperclip CI gates are green
- [ ] Greptile is 5/5 with no open P2s, recommendations, or follow-ups
- [x] I will address all Greptile and reviewer comments before
requesting merge

🤖 Generated with [Claude Code](https://claude.com/claude-code)

Co-authored-by: Claude Opus 5.5 <noreply@anthropic.com>
2026-11-05 22:40:13 -06:00
DottaandClaude Opus 5.5 ec94e43c4a test(server): budget the 130 MB isolated re-home test for its data volume (#19400)
## Thinking Path

> - Paperclip is the open source app people use to manage AI agents for
work
> - Isolated repository re-home moves a task workspace onto the shared
project clone, so the private clone can be deleted
> - One re-home test moves two 65 MiB files on purpose, to prove that
large changes still move
> - On CI this test times out at the 15000 ms default in pull requests
that do not touch re-home
> - The test does a fixed, large amount of CPU work, and a loaded runner
cannot finish it in 15 seconds
> - This pull request gives that one test a 60000 ms budget that matches
its data volume
> - The benefit is a stable server shard, with no change to what the
test proves

## Linked Issues or Issue Description

**What happened?**

A survey of failed `PR` workflow runs found intermittent failures of one
test in pull requests that do not touch re-home:

```
FAIL src/__tests__/isolated-repository-rehome.test.ts > isolated repository source re-home > re-homes a workspace whose changes exceed the default restore point limits
Error: Test timed out in 15000ms.
```

Examples: jobs 127465954304, 127499682176, and 127538360101 (shard
`general-server-without-chat` 7/12). The survey counted 4 such failures.
The other 27 tests in the file passed in each of these runs.

**Expected behavior**

The test passes on every run, and it still proves that a 65 MiB
untracked file and a 65 MiB saved ignored file move with an exact
snapshot match.

**Steps to reproduce**

Run the unchanged test on master while the CPU is oversubscribed:

```sh
cd server
node load.mjs 72 pnpm exec vitest run src/__tests__/isolated-repository-rehome.test.ts -t 'exceed the default' --reporter=verbose
```

`load.mjs` starts 72 busy-loop Node processes (4 per core on an 18-core
machine) and runs the command. The test fails with `Test timed out in
15000ms`.

**Root cause**

The file sizes are part of the test contract. #17410 added the test to
prove two fixes that only show above 64 MiB: `applyRestorePoint` streams
`git diff --binary` into `git apply`, and the ignored-file read sizes
its buffer from the tree. So the files cannot get smaller.

Each full pass over the workspace writes both files into a Git object
store, so it hashes and deflates 130 MB. One test run makes about eight
passes: the test's `before` snapshot, the re-home `before` snapshot, the
capture, the import into the shared clone, the apply, the two
verification snapshots, and the test's final snapshot. That is about 1
GB of SHA-1 and zlib work, plus the byte comparison.

I timed the phases with the re-home hooks on an idle machine: snapshot
0.6 s each, capture and import 1.9 s, worktree add and apply 0.9 s,
verification 1.0 s. With 2 busy processes per core the same phases took
1.3 s, 3.9 s, 1.3 s, and 2.1 s. The work is CPU-bound and scales with
load. No phase waits on a timer, a lock, or a background task. The 15000
ms default is the cause.

## What Changed

- Give `re-homes a workspace whose changes exceed the default restore
point limits` an explicit 60000 ms test budget.
- No other test changes. No production changes. No retries, no skips.

## Verification

Red, on master, 72 busy-loop processes:

```
× ... re-homes a workspace whose changes exceed the default restore point limits
  → Test timed out in 15000ms.
```

Green, with this change, same load:

```
✓ ... re-homes a workspace whose changes exceed the default restore point limits 30414ms
```

So the test needs about 30 s at 4 processes per core, which is half of
the new budget. A hung re-home still fails inside 60 s.

Full file, idle: 28/28 tests pass.

```sh
cd server
pnpm exec vitest run src/__tests__/isolated-repository-rehome.test.ts
```

## Risks

- Low risk. One test budget changes.
- A real slowdown in the re-home path of up to 4 times would no longer
fail this test. Other tests in the file keep the 15000 ms default.

## Model Used

- Claude Opus 5.5 (`claude-opus-5-5`), Anthropic, used through Claude
Code with tool use (shell, file edits) and extended reasoning.

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have searched GitHub for duplicate or related PRs and linked
them above
- [x] I have either (a) linked existing issues with `Fixes: #` / `Closes
#` / `Refs #` OR (b) described the issue in-PR following the relevant
issue template
- [x] I have not referenced internal/instance-local Paperclip issues or
links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip`
URLs)
- [x] My branch name describes the change (e.g. `docs/...`, `fix/...`)
and contains no internal Paperclip ticket id or instance-derived details
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [x] All Paperclip CI gates are green
- [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups
- [x] I will address all Greptile and reviewer comments before
requesting merge

🤖 Generated with [Claude Code](https://claude.com/claude-code)

Co-authored-by: Claude Opus 5.5 <noreply@anthropic.com>
2026-11-05 22:31:00 -06:00
DottaandClaude Opus 5.5 9668e73b4b fix(native): continue a turn automatically when reattachment loses its runner (#19399)
## Thinking Path

> - Paperclip is the open source app people use to manage AI agents for
work
> - Native runs in managed sandboxes recover through reattachment: after
a server restart, and for a same-run retry when a turn ends without a
semantic result
> - Reattachment fails closed when the original runner or sandbox is
gone (`native_remote_recovery_lease_mismatch`,
`runner_remote_process_identity_unavailable`)
> - Saved-work recovery then saves the files, but the task stays blocked
with "Saved work recovered. Send a message to continue." The recovered
hold offers no Retry
> - A restart, deploy or maintenance window must not need a user message
to continue work
> - This pull request requests the task Retry automatically, once, when
it is safe, and offers Retry on the recovered hold when it is not
> - The benefit is that interrupted work continues after infrastructure
events, and a user who must act gets a Retry that works on first use

## Linked Issues or Issue Description

**What happened?**
A native task in a managed sandbox was interrupted. In one case a server
restart claimed a queued user-comment turn for reattachment. In another
case a turn completed without a semantic result, and the same-run retry
claimed the run for reattachment with no restart. In both cases the
original runner or sandbox lease was gone. The run failed with
`native_remote_recovery_lease_mismatch` or
`runner_remote_process_identity_unavailable`. Recovery saved the work.
The task stayed `blocked` with "Saved work recovered. Send a message to
continue." The execution blocker had `canRetry: false`. A manual `POST
/api/issues/:id/retry` started a run that succeeded.

**Expected behavior**
After an infrastructure interruption, the task continues automatically
when the interrupted turn's outcome is known. Otherwise the task offers
a Retry that works on first use.

**Steps to reproduce**
1. Start a native task in a managed sandbox from a user comment.
2. Lose the sandbox lease or the remote runner process (for example,
restart the server during a maintenance window).
3. Let reattachment fail and saved-work recovery complete.
4. See that the task waits for a new message and offers no Retry on the
execution blocker.

**Root cause**
Reattachment (`reattach_remote_runner`) correctly refuses to replace a
missing runner or allocation. Nothing then continued the user's request.
The automatic continuation rule only allows a new user turn after
reconciliation. `getExecutionBlocker` hid Retry whenever a workspace
restore hold existed, also after the files were verifiably recovered.
The same-run retry path also re-enters the restart-recovery owner, so
its event said "after server restart" with no restart.

## What Changed

- New `server/src/services/heartbeat/restart-interrupted-turn.ts`: after
a reattachment claim executes, if the run failed because its runner or
allocation was lost, request the same task Retry that `POST
/issues/:id/retry` creates. It runs once per run (idempotency key
`restart-interrupted-turn:<runId>`), under the authority of the user who
sent the message, assigned the task, or clicked Retry. It requires that
the run recorded no provider turn or that its last provider turn is
settled. System wakes, in-flight turns, and a Retry that this hook
already requested do not continue automatically.
- `heartbeat/recovery.ts`: call the hook after each reattachment claim.
Label same-run retry reattachment as "Reattaching to the existing remote
runner to resume this run", and add `trigger: "same_run_retry"` to the
event payload.
- `execution-blocker.ts`: a failed run whose saved work is verifiably
recovered now offers Retry (`canRetry: true`) with "Saved work
recovered. Retry or send a message to continue." An intentional Stop
keeps "send a message" only.
- `task-retry.ts`: optional `initiatedBy: "restart_recovery"` records
the activity as actor `system`/`restart-recovery` with
`onBehalfOfUserId`.
- `doc/execution-semantics.md`: document the rule.

## Verification

- New regressions in `server/src/services/workspace-recovery.test.ts`
use the real recovery, Retry and dispatch services on embedded Postgres:
- `continues a user turn once ... after $title and recovery saved the
work` (3 cases: restart lease loss before the turn, same-run retry with
the runner gone after a settled turn, same-run retry with the lease gone
after a settled turn). Each asserts one queued successor bound to the
Retry and the user's authority after recovery, idempotent hook calls,
system activity attribution, and no second automatic attempt for the
automatic Retry's own failure.
- `does not continue automatically when $title, and offers a Retry that
works on first use` (in-flight turn, system wake, unrelated error). Each
asserts no successor, `canRetry: true` on the blocker and the
interruption presentation, and one successor after one Retry click.
- Red before the fix: all 6 tests fail (no successor, blocker `canRetry:
false`). Green after the fix.
- `npx vitest run src/services/workspace-recovery.test.ts
src/services/task-retry.test.ts
src/services/task-interruption-presentation.test.ts
src/services/execution-blocker-read.test.ts
src/services/heartbeat/recovery.test.ts
src/services/explicit-native-continuation.test.ts
src/services/quarantined-task-retry.test.ts
src/__tests__/workspace-restore-repair-route.test.ts
src/services/native-runtime/native-failed-workspace-recovery.test.ts`:
1098 passed.
- Not verified on staging. After the next deploy, check a task
interrupted by a restart: it should continue without a message, or show
Retry.

## Risks

- The automatic Retry uses the original user's authority. Admission
rechecks that user's current permission, stop proof, saved-work
recovery, approvals, pauses, budget and ownership. A refused request
leaves the visible Retry.
- A settled turn that ended without a result is continued with a fresh
Retry turn from saved work. A turn whose outcome is unknown (in flight)
is not.
- The hook runs after the claim's execution returns. If the server stops
between the failure and the request, the task shows Retry instead.
- Not in scope: same-run disposition recovery still cannot start a new
runner in the existing sandbox after the original remote runner exits.
This change continues the task with one fresh Retry turn instead. If
that Retry turn also ends without a result and loses its runner, the
task shows Retry.

## Model Used

- Claude Opus 5.5 (`claude-opus-5-5`), Anthropic, used through Claude
Code with tool use (shell, file edits, local test runs).

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have searched GitHub for duplicate or related PRs and linked
them above
- [x] I have either (a) linked existing issues with `Fixes: #` / `Closes
#` / `Refs #` OR (b) described the issue in-PR following the relevant
issue template
- [x] I have not referenced internal/instance-local Paperclip issues or
links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip`
URLs)
- [x] My branch name describes the change (e.g. `docs/...`, `fix/...`)
and contains no internal Paperclip ticket id or instance-derived details
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [x] All Paperclip CI gates are green
- [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups
- [x] I will address all Greptile and reviewer comments before
requesting merge

Related: #19355

🤖 Generated with [Claude Code](https://claude.com/claude-code)

---------

Co-authored-by: Claude Opus 5.5 <noreply@anthropic.com>
2026-11-05 22:29:46 -06:00
DottaandClaude Opus 5.5 5c185db77c fix(tree-control): resume work a subtree pause interrupted (#19394)
## Thinking Path

> - Paperclip is the open source app people use to manage AI agents for
work
> - Task tree control lets the board pause a task tree and then resume
it.
> - A pause stops the runs that are active in the tree. The release must
then continue the work that was pending.
> - A child task whose run was active at pause time did not start again
after release. The child became blocked and asked for a user message.
> - A pause is an operator hold, not a failure. It must not strand work,
and it must not require reconciliation for a run that never started.
> - This pull request re-dispatches interrupted work one time on
release, and it settles a legacy Stop that never entered the adapter.
> - The benefit is that pause and resume keep a task tree moving without
manual recovery, and real safety gates stay in force.

## Linked Issues or Issue Description

**What happened?**

A parent task delegated two children. One child's run was active (in
host workspace preparation, before the adapter started) when the board
paused the parent's tree. The pause cancelled that run. After the board
released the hold, no new run started for that child. The child became
`blocked` with the execution blocker cause
`legacy_execution_requires_reconciliation`. Later the next action became
"Send a message to continue." A sibling child that had no active run at
pause time resumed normally.

**Expected behavior**

A run that a subtree pause cancels is an operator hold. On release, the
pending work starts again one time, automatically. It does not go
through execution reconciliation when the run never entered its adapter.
It does not wait for a user message.

**Steps to reproduce**

1. Create a parent task and a child task that is assigned to an agent.
2. Wake the child. While its run is in host preparation (or queued),
call `POST /api/issues/:parentId/tree-holds` with `{ "mode": "pause" }`.
3. Call `POST /api/issues/:parentId/tree-holds/:holdId/release` without
`wakeAgents`.
4. Before this change, no new run starts, and `getExecutionBlocker`
reports `legacy_execution_requires_reconciliation` for the child.

**Root cause**

- (a) The pause records each interrupted run in the hold member snapshot
(`activeRunId`). Nothing used that record on release.
- (b) Release woke tasks only when `metadata.wakeAgents === true`.
Without it, release relied on stranded-issue recovery. That recovery
stands down when the latest run was cancelled by an operator
(`isOperatorCancelledRun`). So the interrupted child had no owner.
- (c) The pause Stop of a legacy run in preparation is written directly
as `cancelled`. Legacy terminalization classifies a cancelled run with
no bootstrap evidence as an unknown outcome. It records
`legacy_execution_requires_reconciliation`, although the gated dispatch
never entered the adapter.
- Native runs: the verified native Stop does not create the
reconciliation hold, but gap (b) applies to native runs too. The release
change is runtime-independent.

## What Changed

- `issueTreeControlService.findOwedPauseResume` decides if a task is
owed one resume. The task's latest run must be an operator Stop that a
pause hold member snapshot names, recorded while that hold was active.
The task must still be executable by the same agent, and no pause may
still cover it. The obligation belongs to the run, so overlapping pauses
keep it until the last covering release.
- New `services/issue-tree-resume.ts` re-dispatches owed work with wake
reason `issue_tree_resumed` (`holdId` and `interruptedRunId` in the
context). A compare-and-set claim (`treeHoldResume`) on the interrupted
run makes the resume happen at most once. A failed wake returns the
claim.
- Pause release and `mode: "resume"` call it for every member of the
released hold, also without `wakeAgents`. When `wakeAgents` is true, the
existing loop wakes every executable member.
- A task that still has an execution blocker is not replayed. The
release writes `issue.tree_resume_wake_skipped`, the blocker stays
visible, and the obligation stays unclaimed.
- `releaseHold` updates only an `active` hold. A repeated release gets
`409`.
- `settleCancelledLegacyPreparation`: when the executor that owned a
cancelled legacy run proves that dispatch never entered the adapter, it
records bootstrap evidence and resolves that run's
`legacy-execution:<runId>` hold as `false_positive`. It also corrects an
automatic no-replay disposition and restores a `blocked` status only
when that disposition made the change. Then it re-dispatches owed work,
for a release that happened while the Stop was unwinding. It requires a
requested Stop with no existing recovery receipt, and no process,
session, native finalization, unreleased lease, or execution-start
event.
- `settleUnrecoverableExecutions` waits while a legacy executor still
holds its controller lease, and records a `legacyCancellationBlock`
receipt when it blocks a task for a cancelled legacy run.
- Docs: `doc/execution-semantics.md` and `doc/composer-stop.md` describe
the resume rule.

## Verification

- New regression
`server/src/__tests__/issue-tree-pause-resume-run.test.ts` uses embedded
Postgres, the real heartbeat, and the real tree-control routes:
- A run paused during preparation: nothing runs during the hold, there
is no blocker, and release creates exactly one `issue_tree_resumed` run
that succeeds. A second release returns `409` and creates no run.
- Release before the stopped preparation finishes unwinding (with the
periodic disposition run in between): exactly one resumed run after the
executor settles.
- An automatic no-replay disposition that ran first: the blocker clears,
the status returns to `in_progress`, and release resumes once.
- Overlapping child and parent pauses: no resume while the parent pause
remains, then exactly one resume after it is released.
- A queued run cancelled by the pause: release creates exactly one
resumed run.
  - A task reassigned to a user during the hold: no resume.
- A mid-turn legacy Stop with unknown outcome: no replay, the
reconciliation blocker remains, and `issue.tree_resume_wake_skipped` is
logged.
- Red before each fix: the first 4 cases failed on master; the 3 review
cases failed on the first PR commit. All 7 pass now.
- Also passed locally: `issue-tree-control-routes`,
`issue-tree-control-service`, `heartbeat-workspace-busy`,
`heartbeat-undispatched-execution-wait`, `execution-control-work`,
`legacy-workspace-restore-recovery`, `legacy-continuation-authority`,
`task-retry`, `legacy-execution-recovery`, `agent-conversations`,
`heartbeat-retry-scheduling`, `satisfied-connection-intents`.
- Not verified here: a live staging pause/resume. Re-check on staging
after deploy.

## Risks

- Behavior change: release now starts the work that the pause
interrupted, also without `wakeAgents`. Before, that work stayed idle.
Other idle tasks still wake only with `wakeAgents`.
- The settlement trusts the executor's adapter-entry flag. The flag is
set only inside the atomic dispatch gate, which refuses a cancelled run.
The settlement also requires no process, session, lease, or execution
event.
- A native run whose Stop has not finalized at release time is not a
target. Stranded recovery and explicit wake still apply.

## Model Used

- Claude Opus 5.5 (`claude-opus-5-5`), Anthropic, used through Claude
Code with tool use (shell, file edit, test execution).

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have searched GitHub for duplicate or related PRs and linked
them above
- [x] I have either (a) linked existing issues with `Fixes: #` / `Closes
#` / `Refs #` OR (b) described the issue in-PR following the relevant
issue template
- [x] I have not referenced internal/instance-local Paperclip issues or
links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip`
URLs)
- [x] My branch name describes the change (e.g. `docs/...`, `fix/...`)
and contains no internal Paperclip ticket id or instance-derived details
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [ ] All Paperclip CI gates are green
- [ ] Greptile is 5/5 with no open P2s, recommendations, or follow-ups
- [x] I will address all Greptile and reviewer comments before
requesting merge

🤖 Generated with [Claude Code](https://claude.com/claude-code)

---------

Co-authored-by: Claude Opus 5.5 <noreply@anthropic.com>
2026-11-05 22:08:01 -06:00