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87b3e5fc61 |
fix(adapter-utils): stage selected skills into the sandbox for a remote Claude ACP run (#13196)
## Thinking Path > - Paperclip is the open source app people use to manage AI agents for work > - A user selects skills for an agent, and the host materializes those skills into a bundle the agent reads > - An agent can run in a remote sandbox, where the host must stage every file the agent needs > - On the Agent Client Protocol lane the host built that bundle and then named its host path in the prompt, but it never staged the bundle into the sandbox > - The agent therefore read a path that does not exist inside the sandbox, and the run failed on the missing skill file > - The command-line lane of the same adapter already stages a `skills` asset and reads the in-sandbox directory back from the staged runtime > - This pull request carries that proven pattern to the Agent Client Protocol lane, so a selected skill reaches the agent in a remote run ## Linked Issues or Issue Description No public issue exists for this change. The description follows. **What happened?** A remote run of the Claude adapter on the Agent Client Protocol lane could not read any selected skill. The host builds the skill bundle in its own state directory, then writes that host path into the prompt as `Skill root: <path>`. The remote seam of that lane staged one asset only, the configuration seed. It staged no skills asset, so no skill file crossed into the sandbox. The agent then tried to read the skill file at the host path, and the read failed with a missing-file error. **Expected behavior** A remote run receives the skills the user selected, and the prompt names the directory that holds those skills inside the sandbox. **Steps to reproduce** 1. Select one or more skills for an agent that uses the Claude adapter. 2. Start a run for that agent in a remote sandbox on the Agent Client Protocol lane. 3. Ask the agent to read the skill file at the path the prompt names. The file is not there. **Agent adapter(s) involved** The Claude local adapter, on its Agent Client Protocol lane. The shared engine in `packages/adapter-utils` carries the prompt rewrite. **Additional context** The command-line lane of the same adapter already stages a `skills` asset and remaps onto the staged directory. This change reuses that mechanism instead of adding a new transport. One other adapter shows the same host-path shape on its own Agent Client Protocol lane. That lane is tracked separately and this pull request does not change it. ## What Changed - Return the host skill bundle directory from the Claude skill runtime step, and carry it through the remote managed-home context to the staging seam. The value is null for a non-Claude agent, for a run that selects no skill, and for a run whose selected skills all fail to materialize. - Stage that bundle as a `skills` asset on the Claude Agent Client Protocol remote seam, and only when the run selected a skill. - **Stage that asset with `followSymlinks: false`.** The bundle holds an owned copy of each selected skill, and the copy step never copies a symbolic link at the root or at any depth. So the bundle contains no symbolic link, and staging has none to follow. Refusing to follow one also stops a link planted in the bundle directory after the copy from pulling an unrelated host file into the sandbox. A regression test walks the real adapter sources and pins the reviewed `followSymlinks` value at every skills staging site, so a new or changed site fails the test. - **Drop a skill whose staged copy has no usable `SKILL.md`** from the prompt, the skill identity, the command notes, and the bundle, and log which skill was dropped and why. Without this, a skill whose copy failed, or whose `SKILL.md` is a symbolic link the copy step skips, stayed advertised in the prompt while its file was absent — the same missing-file symptom this change exists to fix. - Rewrite the `Skill root:` prompt line, the skill identity, and the command notes onto the in-sandbox directory. The rewrite runs in the engine, after the workspace placement returns the staged runtime. A compatible session resume reuses the cached staged runtime, so the rewrite runs on that path too. - Keep the session fingerprint on the host-independent skill identity. A change to the selected skill set still invalidates a warm session, and the volatile sandbox path stays out of the hash. - A local run, and a run with no selected skill, keep their current behaviour. ## Verification - `pnpm exec vitest run --project @paperclipai/adapter-claude-local src/server/acp.test.ts` — 28 of 28 pass. - `pnpm exec vitest run --project @paperclipai/adapter-utils src/acpx-engine/execute.test.ts src/skills-staging-follow-symlinks.test.ts` — the new engine tests and the staging-site tests pass. - `pnpm --filter @paperclipai/adapter-utils exec tsc --noEmit`, and the same check on the adapter package — both exit 0. - The end-to-end test drives the lane against a local sandbox stand-in. It reads the skill root out of the prompt the runtime received, and then opens the skill file at that path. That is the reported symptom, proved closed. - The new tests carry a sensitivity control. Restoring only the production files to their previous content fails 7 of the 9 new tests. The other 2 do not depend on production code: one is a parser unit test for the source scanner. ## Risks Low risk, and the change is a two-way door. A revert restores the previous behaviour exactly. - **Scope.** The change touches one adapter lane. It does not change the local lane, and it does not change any other adapter. No existing staging site changes its `followSymlinks` value. - **The staged bundle and the workspace.** The staged skills land under the runtime directory inside the workspace. The workspace restore excludes that whole runtime directory, so the staged skills never return to the host worktree. A test proves the exclusion end to end. - **Session reuse.** The rewritten path never enters the session fingerprint, so it cannot invalidate a warm session, and a compatible resume applies the same staged path. - **Direction of data.** Files move from the host into the sandbox only. The change adds no path that writes sandbox content onto the host. - **A dropped skill.** A skill with no usable `SKILL.md` is now absent from the prompt instead of named but unreadable. The run logs the skill and the reason, so the cause is visible. ## Model Used Claude Opus 5 (`claude-opus-5`), with extended thinking and tool use, through Paperclip agents. ## Test plan - [x] `pnpm exec vitest run --project @paperclipai/adapter-claude-local src/server/acp.test.ts` passes — 28 tests. - [x] `pnpm exec vitest run --project @paperclipai/adapter-utils src/acpx-engine/execute.test.ts src/skills-staging-follow-symlinks.test.ts` passes. - [x] `pnpm --filter @paperclipai/adapter-utils exec tsc --noEmit` exits 0. - [x] All continuous-integration gates are green. - [x] The automated review reports no open finding against the current head. ## Required Checklist - [x] I have included a thinking path that traces from project context to this change - [x] I have specified the model used with version and capability details - [x] I have checked ROADMAP.md and confirmed this PR does not duplicate planned core work - [x] I have searched GitHub for duplicate or related PRs and linked them above - [x] I have described the issue in-PR following the relevant bug report template - [x] I have not referenced internal or instance-local Paperclip issues or links - [x] My branch name describes the change and contains no internal Paperclip ticket id - [x] I have run the targeted tests locally and they pass - [x] I have added or updated tests where applicable - [x] I have updated relevant documentation to reflect this change - [x] I have considered and documented the risks above - [x] All continuous-integration gates are green - [x] The automated review score is 5/5 with no open current-head findings - [x] I have addressed every reviewer comment that applies to the current head **Note on the branch history.** This branch first carried a different change: a filename-based admission filter that refused to stage files such as `.env` from a skill directory, together with a switch from symbolic-link bundles to copied bundles. That approach was rejected and **reverted** on this branch. It does not match the documented trust boundary, because the host already delivers credentials into the sandbox on purpose, and replacing the symbolic-link bundles broke live editing of a skill. The revert is in this branch's history. The file that work changed, `packages/adapter-utils/src/server-utils.ts`, is byte-for-byte identical to `master` here and is not part of this diff. Earlier review findings that name that file target the reverted code. All of them are resolved, and the automated review passes on the current head. --------- Co-authored-by: Paperclip <noreply@paperclip.ing> |
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d1ba17eeca |
fix(adapter-utils): fail fast when the sandbox control channel is lost mid-turn (#13158)
## Thinking Path > - Paperclip is the open source app people use to manage AI agents for work > - Adapter utilities run agent turns and report their results to the control plane > - A lost sandbox control channel can leave an agent turn without a result > - The host then waits for the full adapter timeout instead of reporting the loss > - This pull request adds a push loss signal and a bounded host wait > - The benefit is a prompt failure terminal when the agent stops answering ## Linked Issues or Issue Description **What happened?** A sandbox control channel loss during an Agent Client Protocol turn left the host waiting for the four-hour adapter execution timeout. **Expected behavior** The host should detect the terminal channel loss, stop the turn, and report a safe failure without waiting for the agent. **Steps to reproduce** 1. Start an Agent Client Protocol turn through a sandbox adapter. 2. Close the duplex control channel while the turn remains active. 3. Observe the host response before the adapter timeout expires. **Paperclip version or commit** Test the pull request commit set at `10b6bbc5525a79fd575298607dd5a25ae448fc8a`. **Deployment mode** The change applies to sandbox-backed adapter execution. ## What Changed - Add `onLoss(listener)` to the duplex bridge handle. - Register the loss listener at turn start and read losses latched before turn start. - Cancel the turn on loss and arm a 30-second host deadline. - Close the stream locally when the deadline wins and create a host terminal. - Derive the public error from the closed `DuplexLossReason` enum. - Add tests for loss order, cancellation, timeout, and safe error output. ## Verification - Run `pnpm --filter @paperclipai/adapter-utils exec tsc --noEmit`. - Run `pnpm --filter @paperclipai/adapter-utils exec vitest run src/acpx-engine/execute.test.ts -t "run-disposition seam"`. - Confirm that the full pull request workflow passes. ## Risks The new deadline changes a lost-channel path from a long wait to a host-built failure after 30 seconds. Orderly completion keeps its existing behavior. The deadline race against a pending `turn.result` has no direct test. ## Model Used OpenAI Codex, GPT-5, with tool use and code execution. The runtime does not expose a more specific deployment version or context-window size. ## Checklist - [x] I have included a thinking path that traces from project context to this change - [x] I have specified the model used (with version and capability details) - [x] I have checked ROADMAP.md and confirmed this PR does not duplicate planned core work - [x] I have searched GitHub for duplicate or related PRs and linked them above - [x] I have either (a) linked existing issues with `Fixes: #` / `Closes: #` / `Refs: #` OR (b) described the issue in-PR following the relevant issue template - [x] I have not referenced internal/instance-local Paperclip issues or links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip` URLs) - [x] My branch name describes the change (e.g. `docs/...`, `fix/...`) and contains no internal Paperclip ticket id or instance-derived details - [x] I have run tests locally and they pass - [x] I have added or updated tests where applicable - [x] I have updated relevant documentation to reflect my changes - [x] I have considered and documented any risks above - [x] All Paperclip CI gates are green - [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups - [x] I will address all Greptile and reviewer comments before requesting merge --------- Co-authored-by: Paperclip <noreply@paperclip.ing> |
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889947c238 |
feat: add experimental native chat connectors (#13038)
## Thinking Path > - Paperclip is the open source app people use to manage AI agents for work. > - People also ask agents for work in their existing chat tools. > - Each external conversation needs one task and a current authorized source. > - Retries, Stop, and provider failures must not duplicate work or expose private data. > - The first chat PR establishes the opt-in provider and data contracts. > - This PR adds experimental channel integration and its durable control plane. > - Users can request work from connected channels and inspect delivery in Paperclip. ## Linked Issues or Issue Description Refs #13100 and #13092. This is the second of exactly two chat PRs. Foundation #13100 is merged and changed 143 files. Runner prerequisite #13092 is also merged. This PR changes 400 files against master, below the 500-file review limit. It contains no wireframe images or HTML galleries. ## What Changed - Add native Slack, GitHub, Microsoft Teams, Telegram, and Discord chat connections. Keep chat disabled unless the operator enables experimental chat connectors. Preserve the production GitHub tool connection and its normal setup path. - Bind each provider bot identity to one immutable Paperclip agent. Bind each admitted external conversation to one task. Paperclip owns tasks, runs, permissions, and audit records. - Add durable admission, per-conversation queues, questions, task controls, progress, final replies, images, files, and delivery receipts. Board comments remain internal unless explicitly sent to the channel. - Check current identity, provider reach, resource access, credentials, runtime generation, and exact source before provider effects. Keep private responses private. Never send raw reasoning, private logs, credentials, or tool arguments. - Hold uncertain sends for explicit audited resolution. Make Board Send-to-channel atomic and idempotent. Keep reconnect and setup credentials in Paperclip secret storage. - Preserve current native-runner authority across retries, lost acknowledgements, and recovery. Keep immutable input and completion contracts separate from newer user input. Receipt reconciliation cannot launch a provider. - Reconcile chat close/new ordering and provider-effect lock order. Audit resource access changes in the same transaction. Submit only the selected resource from each UI toggle so stale pages cannot undo unrelated access changes. - Drain Codex stdout before certifying process exit. Bound the drain with the existing shutdown grace. Preserve observed terminal authority without treating an undrained process as successful or reusable. - Incorporate master `018ca5da` with its ACP Stop, mobile task layout, runner packaging, and official lock changes. Preserve dedicated chat-answer continuations in both directions when ordinary queued comments are adopted after Stop. - Fence late adapter readiness behind an earlier Stop for the same run. Preserve verified cleanup for registered adapters. Handle single Stop, agent pause, duplicate Stops, and failure release without creating a false cancellation receipt. - Incorporate master's `6dd48cad4` wake-queue extraction. Preserve exact failed-chat retry authorization and lineage, retired question-source suppression, and the block on generic recovery that would discard the admitted source. Fresh deferred input retains its separate promotion path. - Incorporate master `2a05b5ed3` and its queue-admission extraction, simplified transaction ports, and separate runner CI job. Preserve exact durable receipts, actor separation, and dedicated-answer isolation through the new module. A failed receipt insert rolls back the accompanying deferred-wake merge. ## Verification Current head: `afe19299d06253cb628eb398e91d1200ea9f412a`, incorporating master `2a05b5ed3457ea33efd6895520447d1d97fe98d8`. The conflicts are resolved. This successor fixes two test-harness boundaries exposed by CI: per-case route-module preparation and actual durable-save completion before intentional runner termination. Production code and all existing test/turn deadlines are unchanged. [Exact-head Greptile review](https://github.com/paperclipai/paperclip/pull/13038#issuecomment-5587250594) is **5/5**, completed September 10 at 13:20:55 UTC, with no actionable findings or open review threads. [Fresh exact-head CI](https://github.com/paperclipai/paperclip/actions/runs/34481724341) passes **all 24 jobs**, including Build and both required aggregates. Normal exact-head guarded merge was attempted and rejected by the remaining branch approval policy: CODEOWNER review is required and no human approval is present. Normal **squash auto-merge is enabled** as of September 10 at 13:36:26 UTC. Requested CODEOWNERS have been notified; no approval bypass or self-approval was used. Earlier-head results below remain historical evidence, not qualification of this successor. - Final exact-head Linux evidence: 995/995 chat integration cases; 36/36 agent-skills routes; 35/35 runner live-session cases, including real process kill/resume; 1948 runner Vitest cases with three existing benchmark/platform guards; 870/870 API-authority cases; and 104 browser cases with four existing optional skips. Rust, conformance/replay, full repository build, typecheck, canary, all server/workspace shards, and both required aggregates pass with normal CI concurrency. Earlier failed attempts remain recorded below. - Latest test-only qualification: 141/141 route/permissions/authentication cases pass in separate cold forks, with plain server types and independent review clear. The real-runner suite passes 35/35, with plain runner types and independent review clear. A controlled premature-save acknowledgement fails as expected; matching ownership/effect/process evidence, rejected saves, real turn outcome, test abort, and pre-kill liveness are covered. No local reproduction of the original CI scheduling failure is claimed. The preceding [CI run](https://github.com/paperclipai/paperclip/actions/runs/34479680858) passes 21/24 jobs, including all 995 Linux chat cases and browser aggregate (104 passed, four existing optional skips); only Build, the skills serialized shard, and the required verification aggregate fail. Its exact-head Greptile review was 5/5. Both failed job logs are retained. - Final fixture qualification: all eight focused Discord cases and all 995 chat integration cases pass. The exact modal statement/PID is observed before taking the real connection lock; the test then proves its actual blocking relationship before mutation. Original SQL execution, provider behavior, negative assertions, and 1s/15s timeouts remain unchanged. Independent review is clear and test/production hashes remain frozen. The preceding [CI attempt](https://github.com/paperclipai/paperclip/actions/runs/34477184777) passed 22 jobs, including Build/runner, typecheck, canary, all other test shards, and browser aggregate (104 passed, four existing optional skips); the two fixture failures and failed verification aggregate remain recorded, not relabeled as a pass. - Current queue-module composition: 308/308 recovery/batching/queue/Stop tests; 995/995 full chat integration; 89/89 module tests, including real PostgreSQL receipt-insert rollback; 24/24 workflow/module-boundary tests; plain server and UI types. All four actual local process/ACP browser paths pass in 1.4 minutes. Fresh databases, no skips or retries, stable reviewed source hashes. The initial boundary failure is retained; its no-op service wrapper was removed without changing recovery context or weakening the check. An exploratory standalone test-directory typecheck fails because its new upstream transformation config is not a standalone typechecking project; standard CI/build does not invoke it, and no configuration was weakened to suppress those diagnostics. - The preceding head `e02a63d462ce5d47433b0aeb632bb6fd20aab1ba` passed [all 24 CI jobs](https://github.com/paperclipai/paperclip/actions/runs/34436462958) and exact-head Greptile review at 5/5. Required CODEOWNER review prevented its normal merge before master advanced again. - Final extracted-module composition: 307/307 recovery, batching, queue and Stop-control tests; 995/995 full chat integration; 49/49 module tests including eight PostgreSQL adapter cases; and 19/19 issue-update tests. Plain server types pass. All four actual local process/ACP browser paths pass in 1.3 minutes. Fresh databases, no skips or retries in these cohorts, frozen source hashes, and independent review clear. - The preceding head `3e4e1c1c` passes [all PR CI jobs](https://github.com/paperclipai/paperclip/actions/runs/34415826820), including Build and required `ci / verify` and `ci / e2e`. Both the original Rust failure and the previously load-sensitive lineage fixture pass with unchanged Linux concurrency. Master advanced afterward and required this reconciliation. - Final master composition: 448/448 focused UI tests, 186/186 adapter tests, 24/24 queue/control tests, and 11/11 packaging tests. Plain UI, server, shared, and adapter types pass. Token gates and diff checks pass. Independent server and UI reviews are clear. - Stop-registration regression: both real-service cases fail against exact `a95` source and pass with the fix. The full corrected recovery/control suite passes 265/265. Duplicate-owner and failed-Stop controls also pass. Plain server types pass. The readiness barrier prevents provider startup without adding an acknowledgment to an already terminal run. - Final qualification strengthens terminal-field equality and repeats both affected cases successfully on a fresh database. All four actual local process/ACP browser paths pass again in 1.3 minutes, without skips or retries. The final screenshot shows Cancelled, a paused subtree, retained input, and no error toast. - Two new actual-service regressions fail before the merge fix. They prove that queued-comment adoption could consume a dedicated chat answer or add unrelated input to that answer. The fixed four-case cohort passes, including ordinary upstream continuation and adapter Stop controls. Full recovery passes 257/257. All four actual local process/ACP Stop browser flows pass in 1.4 minutes, without skips or retries, on a fresh database. - The unchanged runner artifact was qualified with 171/171 transport tests, 870/870 API-authority tests, conformance 1/1, and replay 11/11. Six controlled reader tests prove the exit/drain repair. Its local serial Rust workspace passed 546 top-level cases plus two invoked helpers; the later passing Linux CI supplies default-concurrency evidence. - Prior exact-source full chat integration passes 995/995. Settings regressions cover concurrent stale pages, 501 destinations, pending state, rejected updates, and explicit retry. These deterministic tests do not prove live provider behavior. - Retained failed attempts and their causes are in the [qualification log](https://github.com/paperclipai/paperclip/blob/afe19299d06253cb628eb398e91d1200ea9f412a/doc/plans/chat-adapters/2026-09-08-chat-queue-and-webhook-repair.md). The first merge adapter run timed out while macOS slept for 290 seconds. Its unchanged repeat passed with a temporary sleep guard. No assertion, deadline, or CI gate was weakened. Review commands include `pnpm --filter @paperclipai/server exec vitest run src/__tests__/heartbeat-process-recovery.test.ts src/__tests__/issue-queued-comments-routes.test.ts` and `pnpm exec playwright test --config tests/e2e/playwright.config.ts tests/e2e/acp-stop-continuation.spec.ts`. Database suites require fresh disposable databases. See the [browser runbook](https://github.com/paperclipai/paperclip/blob/afe19299d06253cb628eb398e91d1200ea9f412a/doc/plans/chat-adapters/2026-09-04-chat-adapters-browser-e2e-runbook.md) for provider setup and separate live acceptance steps. ## Risks - This remains experimental. Deterministic tests and bounded live evidence do not establish every provider feature, tenant, permission layout, or media shape. Teams work-tenant qualification is still open. - Failed and uncertain provider effects remain visible and can require operator action. A transport receipt does not prove recipient visibility. - Native controller and runner artifacts must remain compatible. Preserve lease ownership, terminal authority, source binding, and quarantine during future changes. - Access and audit rows commit together, but activity notifications remain best-effort. This is not a new durable event outbox. - The PR operation does not deploy a live server, replace its runner, or change provider permissions. Remaining live qualification is documented in the [temporary handoff](https://github.com/paperclipai/paperclip/blob/afe19299d06253cb628eb398e91d1200ea9f412a/doc/plans/chat-adapters/2026-09-08-open-qualification-followups.md). ## Model Used OpenAI Codex assisted with implementation, tool execution, testing, and review. The work records `gpt-6-astra` assistance. The environment does not report a context-window size. No private reasoning traces are included. ## Checklist - [x] I have included a thinking path that traces from project context to this change - [x] I have specified the model used (with version and capability details) - [x] I have checked ROADMAP.md and confirmed this PR does not duplicate planned core work - [x] I have searched GitHub for duplicate or related PRs and linked them above - [x] I have either (a) linked existing issues with `Fixes: #` / `Closes #` / `Refs #` OR (b) described the issue in-PR following the relevant issue template - [x] I have not referenced internal/instance-local Paperclip issues or links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip` URLs) - [x] My branch name describes the change (e.g. `docs/...`, `fix/...`) and contains no internal Paperclip ticket id or instance-derived details - [x] I have run tests locally and they pass - [x] I have added or updated tests where applicable - [x] I have updated relevant documentation to reflect my changes - [x] I have considered and documented any risks above - [x] All Paperclip CI gates are green - [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups - [x] I will address all Greptile and reviewer comments before requesting merge --------- Co-authored-by: Paperclip <noreply@paperclip.ing> |
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018ca5daaf |
fix: verify ACP Stop and preserve safe continuation (#13119)
## Thinking Path > - Paperclip is the open source app people use to manage AI agents for work. > - Task controls coordinate provider execution and queued user messages. > - Stop could finish before an embedded ACP provider stopped its tools. > - A later request could be held for reconciliation without a clear task response. > - A restored provider could also retain the stopped run's API credential. > - This pull request verifies provider termination and preserves safe session continuation. > - Operators can continue known-safe work and see why uncertain work cannot start. ## Linked Issues or Issue Description **What happened?** Stop could leave an embedded ACP provider running. A queued follow-up followed by “go” could fail before it reached the provider. Task chat could show a generic missing-response message. Even a restored session could use the previous run's credential and fail its task update. **Expected behavior** Stop waits for confirmed provider termination. A later explicit wake continues the same compatible session only when recorded actions have known outcomes. It carries pending comments and the current run's environment. Uncertain actions retain a visible reconciliation hold. Composer Stop preserves the existing pause rule: conversation can continue while paused, but task work requires Resume. **Steps to reproduce** 1. Start an embedded ACP task. 2. Send a second request while the provider is running. 3. Interrupt the run, then send “go”. Also test composer Stop followed by Resume work. 4. Check that the request is delivered once and that the provider can complete the task through the current run's API credential. 5. Repeat with an unfinished write. Confirm that the write stops and that further execution stays blocked with a visible reason. **Paperclip version or commit** Built from source on master at `3bc60dd8b` plus this branch. **Deployment mode** Local source build with an isolated embedded PostgreSQL instance. Refs #11183. Refs #12552. Those changes address recovery after operator cancellation. This change also covers embedded ACP termination, session proof, pending-comment delivery, and task feedback. ## What Changed - Propagate Stop into embedded ACP and wait for bounded adapter cleanup and provider exit. Retain the actual ChildProcess object for forced termination on all platforms; never signal a recycled numeric PID. - Preserve interrupted checkpoints only for acknowledged, local, persistent sessions with settled reads or no tools. Keep writes, incomplete actions, and forced termination blocked. - Restore the same compatible provider session with the current run's environment. Reject fresh-session fallback for an interrupted checkpoint. - Adopt pending comments on the next explicit wake. Stop alone does not dispatch them. - Share the execution-blocker rule across dispatch, Resume, and task detail. Show Stopped or Couldn't start with the recorded reason. Resolve the stopped agent for the run link, including reviewer runs. - Keep execution reconciliation holds intact when generic recovery sees queued comments or healthy child tasks. - Add process, service, component, and browser regression coverage. Fix disposable database cleanup and React test settling exposed by the full suite. ## Verification - Passed `pnpm -r typecheck`, `pnpm build`, and `pnpm check:token-gates`. - Passed all three `acp-stop-continuation.spec.ts` browser journeys. They use an actual ACP child process and require task completion through the agent API. - Passed 165 adapter execution, operator-stop, and child-process control tests, 17 queued-comment route tests, and 65 tests in the two adjusted UI suites. Earlier focused recovery, heartbeat, and task-control tests also passed. - Manually used the browser to queue a request, Stop, send “go” while paused, and Resume. The same session answered once and moved the task to Done with the current run's credential. - Manually interrupted an unfinished write. Its file size stayed fixed for five seconds. “Go” showed the reconciliation reason and did not start another provider prompt. - Separate live Claude ACP smoke checks confirmed that Stop ended a disposable local write and that a no-tool interruption could resume the exact provider session. The browser fixture does not call Drive or another external app. - Passed all 5,615 UI tests and 3,090 other workspace tests. The CLI and general server groups pass with targeted retries: two transient server failures passed together on retry, and two embedded-database startup failures passed after removing abandoned shared-memory segments from this task's completed browser fixtures. All 144 serialized server suites completed, with 2,189 tests passing after two transient HTTP socket failures passed on retry. - Passed all 135 heartbeat process/recovery tests, including a deterministic regression that failed before the recovery-sweep fix. - Passed 18 dispatch integration tests, including stopped-reviewer links, company boundaries, and malformed run IDs. - Greptile is 5/5 on `7dd170d83`, with zero unresolved review threads. The security scan and all required CI gates pass for the same commit. ## Risks - Safe continuation depends on complete tool reporting and a restorable local provider session. Unknown outcomes remain blocked and require reconciliation. - Provider cleanup can take time. A timeout does not grant replay permission. - The change adds optional adapter context fields and an optional issue projection. It does not change the database schema or require a migration. - Test cleanup truncates company data only in a disposable test database. ## Model Used OpenAI GPT-6, running as Codex with repository tools, code execution, and browser interaction. The runtime does not expose a more specific model deployment ID or context-window size. ## Checklist - [x] I have included a thinking path that traces from project context to this change - [x] I have specified the model used (with version and capability details) - [x] I have checked ROADMAP.md and confirmed this PR does not duplicate planned core work - [x] I have searched GitHub for duplicate or related PRs and linked them above - [x] I have either (a) linked existing issues with `Fixes: #` / `Closes #` / `Refs #` OR (b) described the issue in-PR following the relevant issue template - [x] I have not referenced internal/instance-local Paperclip issues or links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip` URLs) - [x] My branch name describes the change (e.g. `docs/...`, `fix/...`) and contains no internal Paperclip ticket id or instance-derived details - [x] I have run tests locally and they pass - [x] I have added or updated tests where applicable - [x] I have updated relevant documentation to reflect my changes - [x] I have considered and documented any risks above - [x] All Paperclip CI gates are green - [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups - [x] I will address all Greptile and reviewer comments before requesting merge --------- Co-authored-by: Paperclip <noreply@paperclip.ing> |
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3bc60dd8bf |
fix(adapters): probe Git context in the remote workspace (#13116)
## Thinking Path > - Paperclip is the open source app people use to manage AI agents for work. > - Remote environments realize the workspace at a provider-owned path. > - Run startup probes Git and network context before it starts the agent. > - The probe used the controller path inside the remote environment. > - A missing directory stopped the run before any provider work began. > - This pull request uses the remote execution target's working directory. ## Linked Issues or Issue Description Refs #13094, which introduced this probe. Related: #8997 and #10419 address other workspace-directory handoffs; this patch fixes the newer Git-context probe. **What happened?** Remote runs failed with `setup_failed: Could not read execution-target Git context`, including tasks that did not use Git. The provider shell could not enter the controller's workspace directory. **Expected behavior** Startup must inspect Git and network context in the realized remote workspace. **Steps to reproduce** 1. Select a remote sandbox whose workspace is `/home/daytona/paperclip-workspace`. 2. Start a task whose controller workspace is under `/paperclip/instances/default/workspaces/`. 3. The startup probe exits when the controller directory does not exist in the sandbox. **Paperclip version or commit** Reproduced on `622376e99` and in the regression test before this patch. **Deployment mode** Docker controller with a remote Daytona sandbox. The same helper also serves SSH targets. ## What Changed - Use `remote.remoteCwd` for the remote Git-context probe. - Cover a missing controller directory in both credential modes. - Verify that SSH reads Git metadata from the remote workspace even when the caller directory exists. ## Verification - Before the fix, both new missing-directory tests failed with the reported error. - The launcher environment suite passes: 18 tests. - The adapter-utils suite passes: 1,085 passed, 11 skipped. - Adapter-utils typecheck passes. - A disposable sandbox with the affected deployment's image reproduced the old `cd` failure and passed with the corrected helper. The sandbox was deleted afterward. - Full repository typecheck and build pass locally. All CI gates pass at `61b522c`: regular test shards, serialized server suites, browser shards, Runner verification, build, policy, and security checks. - The first CI Build attempt hit a Runner suspension-acknowledgment timeout outside the changed code. The affected 13-case recovery group passes locally with its Rust fixtures built, and the unchanged CI job passed on its single retry. - The full serial local test run was stopped in favor of the complete CI matrix; it is not claimed as a local pass. ## Risks The probe now uses the provider-resolved target directory for sandbox and SSH execution. Local execution keeps its existing directory. There are no schema or API changes. Existing local credential and Git metadata tests pass. ## Model Used OpenAI GPT-6 in Codex, with tool-assisted code analysis, implementation, and live and automated testing. The exact model identifier and context-window size are not exposed by this session. ## Checklist - [x] I have included a thinking path that traces from project context to this change - [x] I have specified the model used (with version and capability details) - [x] I have checked ROADMAP.md and confirmed this PR does not duplicate planned core work - [x] I have searched GitHub for duplicate or related PRs and linked them above - [x] I have either (a) linked existing issues with `Fixes: #` / `Closes #` / `Refs #` OR (b) described the issue in-PR following the relevant issue template - [x] I have not referenced internal/instance-local Paperclip issues or links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip` URLs) - [x] My branch name describes the change (e.g. `docs/...`, `fix/...`) and contains no internal Paperclip ticket id or instance-derived details - [x] I have run tests locally and they pass - [x] I have added or updated tests where applicable - [x] I have updated relevant documentation to reflect my changes - [x] I have considered and documented any risks above - [x] All Paperclip CI gates are green - [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups - [x] I will address all Greptile and reviewer comments before requesting merge Co-authored-by: Paperclip <noreply@paperclip.ing> |
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82f662656a |
fix(runner): restore legacy Git access and independent networking (#13094)
## Thinking Path
> - Paperclip runs agents for people with different GitHub accounts.
> - Managed operations must use the intended person's eligible
connection.
> - A failed duplicate connection must not hide a healthy grant for the
same account.
> - Legacy hosts also need their existing Git configuration when managed
access is not configured.
> - Runner networking and local Git operations must not depend on GitHub
broker availability.
> - This pull request separates those policies and improves failure
diagnostics.
## Linked Issues or Issue Description
**What happened?** New runs always cleared host Git credentials and
installed managed launchers. Network permission depended on GitHub
environment variables. A launcher failure could stop even local `git
status`. A newer unhealthy duplicate could take precedence over a
healthy connection, and generic health errors were shown as reconnect
requirements.
**Expected behavior:** Use a healthy eligible managed connection for the
intended account. Preserve host authentication only for unconfigured
standard-trust local or SSH execution. Permit local Git during broker
failures and keep network permission independent of GitHub credentials.
**Steps to reproduce:** Configure healthy and unhealthy grants for one
GitHub account, dispatch an agent, and execute Git commands. Separately
run an unconfigured legacy host with existing GitHub CLI authentication.
Stop the broker and run local `git status`.
**Paperclip version or commit:** Master at
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35fdc0c66b |
fix: make task recovery durable and preserve current requests (#13075)
Make task recovery durable and preserve the latest user request across native and legacy continuations. Keep routine recovery quiet and prevent replay when action outcomes are uncertain. Co-Authored-By: Paperclip <noreply@paperclip.ing> |
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e200104727 |
feat: review connection actions from tasks (#13063)
Bring governed connection reviews into task history and composer approvals. Share resolution with Connections, add scoped remembered permissions, and resume agents through durable outcome receipts. Keep cards compact, collapse raw results, isolate untrusted provider output, bound continuation payloads, and reconcile missed live events. Add Storybook coverage, browser journeys, and service regression tests. Verification: all PR CI gates passed, Greptile 5/5, security scans passed, five connection-review browser journeys passed, and real native Codex approval/continuation was verified against the local MCP fixture. Co-Authored-By: Paperclip <noreply@paperclip.ing> |
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2043e0c735 |
fix: repair runner configuration, macOS execution, and artifact galleries (#13062)
## Thinking Path > - Paperclip is the open source app people use to manage AI agents for work. > - Agent adapters select a provider, a model, and a runtime. > - Runner conversion rejected existing Claude agents. The model list mixed providers. > - The native Claude runner rejected custom models and could not launch on macOS. > - This pull request fixes conversion, model selection, and verified macOS execution. > - It also groups configuration fields consistently across adapters and opens artifact images in the task gallery. > - Operators can change an agent configuration and run the selected model on their Mac. ## Linked Issues or Issue Description **What happened?** Converting an existing Claude agent to Paperclip Runner failed with a Codex-only restriction. ACPX Claude showed unrelated models and required `claude-sonnet-5`. Its native runtime rejected macOS. Configuration mixed common model settings with process controls. Artifact cards labeled “Open gallery” navigated to attachment URLs instead of opening the task gallery. **Expected behavior** Conversion keeps agent identity and compatible settings. ACPX Claude uses the normal Claude catalog and accepts typed model IDs. Codex uses the native runner. The verified Claude runtime can launch on macOS ARM64 and x64. Common configuration sections place the same fields together across adapters. Artifact images open in the shared task gallery with navigation and downloads. **Steps to reproduce** 1. Open the configuration of an existing Claude agent. 2. Convert it to Paperclip Runner. 3. Select ACPX Claude and a different catalog model or a typed model ID. 4. Save the agent and run a disposable task on macOS. 5. Inspect configuration and advanced run-policy controls across adapters. **Paperclip version or commit** The bugs were reproduced on `165ca56a22adb60e5fda56045442d9c8498116a8`. This branch was rebased onto `7ed122911`. **Deployment mode** Built from source. Local test-drive instance on macOS ARM64 with an isolated database. Related work: #11798 addresses unsupported ACP session options in the existing adapter path. #13048 addresses working-folder preservation. This change fixes native runner configuration and launch behavior. ## What Changed - Remove the Codex-only conversion restriction. Preserve agent identity, instructions, directories, credentials, and compatible model settings. Reset incompatible sessions while retaining history. - Show ACPX Claude and native Codex as distinct provider choices. Remove ACPX Codex from advertised configuration. Normalize legacy configurations before fresh runs without rewriting historical run descriptors. - Select model catalogs and cache entries by provider. Support refresh and typed model IDs. Pass exact Claude IDs through session creation, model changes, and recovery. - Add verified macOS ARM64 and x64 Claude SDK snapshots. Bound executable allocation and total snapshot size. Preserve package checks, dependency isolation, process ownership, cancellation, and Linux descriptor loading. - Probe local runtime readiness. Report remote platform checks as incomplete until the remote runner verifies its runtime. - Surface actual model rejection and allow correction and retry. - Repair missing ACPX goal-capability helpers exposed by the post-rebase live test. Persist and restore the optional capability without breaking session startup. - Put Agent identity first and intentionally remove the Capabilities editor, as requested. This is removal of UI editing, not relocation: preserve existing capability metadata and API compatibility without adding another editor. Use the themed select for configurable permission modes, with normal text instead of monospace. - Put model and provider under Adapter. Give environment variables their own section. Fold command and arguments under Configuration. Fold lifecycle, timeout, and interrupt grace under Advanced Run Policy. Hide single-option permission controls. - Open image and video artifact cards in the existing task gallery, including cards in the artifacts panel. Chat attachment images use the same gallery. Preserve standalone media previews and download links. ## Verification - Rebased focused UI/API/database suites: 293 tests passed. - Rebased native runtime and ACPX suites: 242 passed, 7 skipped. - Repository typecheck, build, and token gates passed for the runner changes. Gallery follow-up UI typecheck, build, and token gates also passed. - Follow-up UI suites passed (86 tests), packaging checks passed (14 tests), and the final focused runtime suites passed (126 passed, 7 skipped). - Linux container isolation and lifecycle fixtures passed before rebase (57 passed, 2 skipped). Rust ACPX provider-session tests passed after rebase (8 tests). - Browser tests completed actual Claude and native Codex tasks on macOS ARM64. They covered conversion, catalog refresh, a non-default catalog model, a typed `haiku` ID, save/reload, cancel, follow-up session continuity, invalid-model errors, and recovery. - Final-revision live tests completed a typed Claude task, a follow-up with the same provider session, and a native Codex task on macOS ARM64. - Browser tests confirmed the moved interrupt-grace field saves and survives reload. Cross-adapter tests cover Claude, Codex, Gemini, process, gateway, and schema forms. - Full local run: 7,080 passed, 30 skipped, and two timeouts. Both timeout suites passed on isolated rerun (84 tests); the failures were the plugin login-worker exit diagnostic and the runner real-server vertical slice. - Final follow-up checks: 50 registry tests and 45 snapshot/installation tests passed (6 platform-specific skips). Oversized executable rejection is covered before allocation or reading; unsupported-platform tests invoke the real installation probe. - Runner head `ddb5101c483a297f74875ab96b3c66035b002d50`: all CI gates green, including full runner verification, repository build, typecheck, general/serialized server suites, browser tests, and canary dry run. [CI run](https://github.com/paperclipai/paperclip/actions/runs/34286178670). - Greptile: 5/5 on that runner head. All four review threads resolved. Superagent, Socket, and Snyk checks green. - After snapshot hardening, another real Claude task completed on this Mac using the rebuilt runtime. - Gallery follow-up: 148 focused tests passed, covering artifact selection, shared attachment collections, deduplication, image/video cards, standalone previews, downloads, and closing. Live browser verification completed on the settings follow-up: artifact selection, 6-image pagination with wrapping, download action, and closing all stayed on the same task URL. All checks passed on gallery head `96136da58ff195bf6ca00b281eb3022ad12d7bd8`: [CI run](https://github.com/paperclipai/paperclip/actions/runs/34287987536). Greptile returned 5/5 on that exact head with no unresolved threads. - Final settings polish: 96 focused tests, UI typecheck/build, and token gates passed. A real browser walkthrough verified readable permission options, identity placement, Capabilities removal, and permission save/reload. Original test-agent permission mode restored. All 31 checks passed on final head `e46540d6bf32bfb0566dca16b2f4a75ba437618c`: [CI run](https://github.com/paperclipai/paperclip/actions/runs/34292797886). Greptile returned 5/5 with no unresolved threads. ## Risks - Capabilities intentionally has no editable UI field after this change. Existing values remain readable and API-compatible; removing the field does not erase stored metadata. - macOS launch now copies verified package files into private snapshots. The implementation must retain isolation and clean up snapshots on exit. - Runtime provider or model changes reset the current session. Historical runs remain available. - The macOS x64 SDK executable digest was verified, but a live Intel Mac run was not available. Linux verification used container fixtures, not a real Claude task. - Remote environment tests report a warning when only the platform has been checked. They do not claim package readiness from the server host. ## Model Used OpenAI Codex, based on GPT-6. The exact served model identifier and context-window limit are not exposed in this session. Used reasoning, repository inspection, code execution, Rust and TypeScript tests, and browser automation. ## Checklist - [x] I have included a thinking path that traces from project context to this change - [x] I have specified the model used (with version and capability details) - [x] I have checked ROADMAP.md and confirmed this PR does not duplicate planned core work - [x] I have searched GitHub for duplicate or related PRs and linked them above - [x] I have either (a) linked existing issues with `Fixes: #` / `Closes #` / `Refs #` OR (b) described the issue in-PR following the relevant issue template - [x] I have not referenced internal/instance-local Paperclip issues or links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip` URLs) - [x] My branch name describes the change (e.g. `docs/...`, `fix/...`) and contains no internal Paperclip ticket id or instance-derived details - [x] I have run tests locally and they pass (focused suites and both timeout suites on rerun; full-run counts above) - [x] I have added or updated tests where applicable - [x] I have updated relevant documentation to reflect my changes - [x] I have considered and documented any risks above - [x] All Paperclip CI gates are green - [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups - [x] I will address all Greptile and reviewer comments before requesting merge --------- Co-authored-by: Paperclip <noreply@paperclip.ing> |
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6019e2bd6e |
feat(adapter-utils): carry binary bodies and attachment routes over the HTTP/2 sandbox bridge (#12923)
## Thinking Path > - Paperclip is the open source app people use to manage AI agents for work > - Paperclip runs agents in local and remote sandboxes through adapter utilities > - The HTTP/2 sandbox bridge decoded every body as UTF-8 text and rejected non-JSON content > - This stopped agents from uploading or downloading issue attachments through that bridge > - This pull request carries raw bytes, permits the two attachment routes, and enforces a shared body limit > - The benefit is correct attachment transfer with a process-wide memory guard ## Linked Issues or Issue Description **What existing behavior does this improve?** The HTTP/2 sandbox bridge forwards request bodies between an agent sandbox and the Paperclip host. It now supports binary bodies and the issue attachment routes. **Current behavior** The bridge decodes each body as UTF-8 text. It returns HTTP 415 for content types outside the JSON route list. An agent cannot upload or download an issue attachment through this transport. **Proposed behavior** The bridge carries raw bytes through the forward path. It permits the attachment upload and content routes. The queue transport and file gateway keep their existing route behavior. A shared 10 MiB body limit and process-wide byte reservation protect memory use. **Reason and benefit** Attachment clients need byte-preserving transfer. The shared limit keeps the gateway and host aligned. The reservation prevents concurrent streams from exceeding the accepted process memory ceiling. **Breaking changes** The HTTP/2 bridge accepts two attachment routes and permits binary content. The queue transport and file gateway keep their previous route lists and HTTP 415 behavior. No schema or external endpoint changes. ## What Changed - Carry request and response bodies as raw bytes through the HTTP/2 bridge. - Permit attachment upload and attachment content routes on the HTTP/2 bridge only. - Raise the resolved per-body limit to 10 MiB and share it between the gateway and host. - Reserve body bytes before allocation and release each stream reservation on every terminal path. - Document the body limit, process ceiling, and reservation behavior. ## Verification - Run `pnpm exec vitest run packages/adapter-utils/src/http2-bridge-server.test.ts packages/adapter-utils/src/execution-target-sandbox.test.ts packages/adapter-utils/src/sandbox-callback-bridge.test.ts`; 226 tests pass. - Run `pnpm --filter @paperclipai/adapter-utils typecheck`; it passes. - Run the direct server TypeScript check with `tsc --noEmit` in `server/`; it passes with zero errors. - Verify multipart upload and binary download round trips over HTTP/2 without corruption. - Verify the queue transport and file gateway return HTTP 415 for the same routes. - Verify the host rejects bodies over the resolved limit. - Verify a denied reservation returns HTTP 503 and allocates no copy. - Verify stream cleanup releases reservations after completion, error, abort, timeout, and close. ## Risks The bridge now accepts larger bodies and binary content. The process-wide reservation limits total live body bytes to 1 GiB. Route behavior changes only for the HTTP/2 bridge. The security review found no blocking issue for this commit range. ## Model Used OpenAI Codex, GPT-5. The runtime used tool calls and code execution. The runtime did not expose the context window size. No model-generated code changes were made for this pull request. ## Checklist - [x] I have included a thinking path that traces from project context to this change - [x] I have specified the model used (with version and capability details) - [x] I have checked ROADMAP.md and confirmed this PR does not duplicate planned core work - [x] I have searched GitHub for duplicate or related PRs and linked them above - [x] I have either (a) linked existing issues with `Fixes: #` / `Closes #` / `Refs #` OR (b) described the issue in-PR following the relevant issue template - [x] I have not referenced internal/instance-local Paperclip issues or links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip` URLs) - [x] My branch name describes the change (e.g. `docs/...`, `fix/...`) and contains no internal Paperclip ticket id or instance-derived details - [x] I have run tests locally and they pass - [x] I have added or updated tests where applicable - [x] I have updated relevant documentation to reflect my changes - [x] I have considered and documented any risks above - [x] All Paperclip CI gates are green - [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups - [x] I will address all Greptile and reviewer comments before requesting merge --------- Co-authored-by: Paperclip <noreply@paperclip.ing> |
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3ad494aacd |
fix(adapter-utils): preserve legacy sandbox PATH with managed GitHub (#13051)
## Thinking Path > - Paperclip lets people manage AI agents and their work. > - Remote agents need both their installed tools and managed GitHub credentials. > - The GitHub launcher replaces a missing remote PATH with a small system path. > - Legacy images install agent CLIs outside that path, so those agents cannot start. > - This pull request preserves the remote toolchain and puts managed GitHub commands first. > - Command checks now use the same environment as execution. ## Linked Issues or Issue Description Refs #13005. Related: #10239 fixes a separate Cursor environment path issue. Searched open issues and PRs for sandbox PATH and GitHub launcher changes. No duplicate of this launcher fix was found. **What happened?** A remote Claude or Codex run passes command discovery, then fails with `command not found` and exit code 127. Managed GitHub launchers use only their own directory and `/usr/local/bin:/usr/bin:/bin`. This drops NVM and other toolchain directories from the sandbox path. **Expected behavior** Agent CLIs remain available on legacy and current sandbox images. Managed `git` and `gh` still resolve first and use the responsible person's credentials. **Steps to reproduce** 1. Use a sandbox whose agent CLI is installed in an NVM or other non-system bin directory. 2. Start an agent run with managed GitHub launchers and no explicit PATH override. 3. Observe that command discovery succeeds but the agent command exits with code 127. **Paperclip version or commit** Observed on `b97101893f0926f57ed0ce9ef1f8d3e4780c62c2`. The same launcher behavior remains on the base commit `be6bb768b`. **Deployment mode** Hosted server with remote sandbox execution. The shared launcher also supports SSH targets. ## What Changed - Read the remote target's effective PATH when no remote override is set. Do not copy an inherited controller PATH. - Prepend the managed launcher directory and retain the combined path in shell startup files. - Stop startup if path discovery fails. Frame the response so login banners cannot contaminate PATH. - Pass the sanitized launch environment to sandbox command checks, installation, and the second check. - Add real shell tests for legacy and current CLI layouts, quoted paths, managed GitHub command execution, explicit overrides, SSH, and failure cases. - Document the remote path contract. ## Verification - Four focused adapter utility suites passed: 153 tests. - The regression suite passed: 13 tests, including the Linux stdin handling fix. - `pnpm --filter @paperclipai/adapter-utils typecheck` passed. - Full workspace `pnpm -r typecheck` and `pnpm build` passed. - The regression suite fails on the unchanged base revision (12 failures, 1 pass) and passes with this change (13 passes). The baseline ran in an isolated scratch copy. - Full local test coverage was attempted using the official CI shards. The run was stopped after macOS Postgres shared-memory exhaustion and CLI timeouts under load. The affected server database suite passed in isolation (31 tests), as did the five affected DB/CLI suites (89 tests). - [Full Linux CI](https://github.com/paperclipai/paperclip/actions/runs/34258333833) passed on `4e1426f5b`: all general and serialized test shards, all browser shards, typecheck and release registry checks, native runner verification, application build, and release canary dry run. - Greptile scored the latest commit 5/5 with no unresolved findings. - Shell tests use isolated local fixtures and make no provider or model requests. No live sandbox qualification is claimed. ## Risks - Remote startup adds one bounded path query when no explicit override exists. A failed query stops startup. - Explicit remote path overrides still control which tools are available. Invalid overrides now fail the command check earlier. - Credential selection and GitHub broker policy are unchanged. Tests verify managed wrappers stay first and can invoke underlying commands. - No database migration or sandbox image replacement is required. ## Model Used OpenAI GPT-6 through Codex, with reasoning, repository editing, and terminal tools. The exact serving model ID and context-window size are not exposed in this session. ## Checklist - [x] I have included a thinking path that traces from project context to this change - [x] I have specified the model used (with version and capability details) - [x] I have checked ROADMAP.md and confirmed this PR does not duplicate planned core work - [x] I have searched GitHub for duplicate or related PRs and linked them above - [x] I have either (a) linked existing issues with `Fixes: #` / `Closes #` / `Refs #` OR (b) described the issue in-PR following the relevant issue template - [x] I have not referenced internal/instance-local Paperclip issues or links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip` URLs) - [x] My branch name describes the change (e.g. `docs/...`, `fix/...`) and contains no internal Paperclip ticket id or instance-derived details - [x] I have run tests locally and they pass - [x] I have added or updated tests where applicable - [x] I have updated relevant documentation to reflect my changes - [x] I have considered and documented any risks above - [x] All Paperclip CI gates are green - [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups - [x] I will address all Greptile and reviewer comments before requesting merge --------- Co-authored-by: Paperclip <noreply@paperclip.ing> |
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297d8741f5 |
fix: resolve duplicate connections to the same GitHub account (#13022)
## Thinking Path > - Paperclip lets people share agents while keeping GitHub access personal. > - Each managed Git or GitHub operation selects an eligible connection grant. > - Connecting the same GitHub account twice creates two grants. > - The old resolver counted grants and rejected them as competing identities. > - Managed commands then ran anonymously and reported a misleading login failure. > - This change compares GitHub account IDs and selects one eligible grant for the same account. > - The benefit is reliable access after reconnecting, with clear diagnostics for real failures. ## Linked Issues or Issue Description Refs #13005. **What happened?** Two active connections owned by one Paperclip user pointed to the same GitHub account. Managed Git refused both as ambiguous. The agent could not push, although the account was connected and had repository access. **Expected behavior** Multiple grants for the same GitHub account resolve to one eligible authorization. Different accounts remain ambiguous. Unavailable access explains its cause without blocking unrelated work. **Steps to reproduce** 1. Connect the same GitHub account twice for one Paperclip user and allow the shared agent through both connection audiences. 2. Start an instruction as that user. 3. Run managed gh or git push. Before this fix, no credential is provided. ## What Changed - Compare stable GitHub account IDs when more than one eligible grant exists. Never deduplicate by login alone. - Prefer an available grant, then the newest authorization with a stable ID tie-breaker. Refresh and webhook timestamps do not change the selection. - Keep the selected credential and connection policy together. Do not combine permissions or fall back from a dedicated account to a personal account. - Print the redacted unavailable reason in managed command output. Unrelated local operations still work anonymously. - Add database and executable launcher regressions, and document selection behavior. ## Verification - Final `pnpm -r typecheck` and `pnpm build` passed. - Fourteen operation credential integration tests passed, covering duplicate personal/dedicated grants, incomplete credentials, distinct accounts with the same login, missing identity metadata, revocation, membership, connection audiences, and A → B → A steering. Existing Git credential and gateway suites and both executable launcher tests also passed. - The local broad test run encountered three embedded-Postgres lifecycle timeouts and stale modules from edits made during that run. A fresh process rerun of all four affected suites passed all 35 tests. The full Node 24 CI test matrix passed on the final commit. - CI passed all 31 checks on `797973b30beb16ba5fa69ed281835e1ab812b449` (Storybook visual regression was correctly skipped). An unrelated Company Settings UI test failed once; the focused local reproduction and rerun of its CI shard both passed without code changes. - Fresh Greptile review of the final commit: 5/5, with no open findings. Security checks passed. - Live acceptance passed with both duplicate connections enabled: managed `gh api user` returned the expected account, managed `git push` succeeded, and the agent created #13023 and pushed its review fixes. No host login or credential changes were used. - Applied the final source/compiled patch to the affected instance with backups, after confirming no runs were active. Restarted service health and the final resolver selection were verified. The patch is an overlay on the existing deployment; this PR supplies the upstream fix. ## Risks The resolver selects one authorization for an already permitted GitHub account. It does not combine repository permissions across connections. If the selected authorization has narrower access, that operation can still be denied by GitHub. Different provider account IDs and unknown duplicate identities continue to fail closed. No schema, host credential, or connection permission changes are included. ## Model Used OpenAI GPT-6 through Codex assisted implementation and verification with shell, database, and browser tools. The exact model variant and context-window size are not exposed in this session. ## Checklist - [x] I have included a thinking path that traces from project context to this change - [x] I have specified the model used (with version and capability details) - [x] I have checked ROADMAP.md and confirmed this PR does not duplicate planned core work - [x] I have searched GitHub for duplicate or related PRs and linked them above - [x] I have either (a) linked existing issues with `Fixes: #` / `Closes #` / `Refs #` OR (b) described the issue in-PR following the relevant issue template - [x] I have not referenced internal/instance-local Paperclip issues or links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip` URLs) - [x] My branch name describes the change (e.g. `docs/...`, `fix/...`) and contains no internal Paperclip ticket id or instance-derived details - [x] I have run tests locally and they pass - [x] I have added or updated tests where applicable - [x] I have updated relevant documentation to reflect my changes - [x] I have considered and documented any risks above - [x] All Paperclip CI gates are green - [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups - [x] I will address all Greptile and reviewer comments before requesting merge --------- Co-authored-by: Paperclip <noreply@paperclip.ing> |
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1cc45086d3 |
feat: use the responsible person's GitHub for shared agent operations (#13005)
## Thinking Path > - Paperclip is the open source app people use to manage AI agents for work. > - Several people can send instructions to the same agent and task. > - A fixed GitHub token in the provider process can keep the first person's access after another person's message is accepted. > - Task ownership cannot select credentials for each accepted instruction or preserve the identity of an operation already in progress. > - This pull request records ordered execution identity contexts and resolves credentials when managed Git, gh, or GitHub tools start. > - The benefit is automatic personal GitHub access for shared agents, with durable continuation rules and no teammate credential fallback. ## Linked Issues or Issue Description **Subsystem affected** Cross-cutting: orchestration, connection grants, database, runtime adapters, native runners, and run details. **Problem or motivation** A shared agent must use the person whose instructions it has accepted. A queued message must retain its author. A retry or approval without new instructions must retain the originating identity. GitHub must remain optional for ordinary work. **Proposed solution** Persist execution identity separately from task ownership. Give new processes a run-scoped broker capability and token-free managed launchers. Capture identity at operation start. Keep an explicit dedicated-agent grant as an override. Show redacted diagnostics in run details. **Alternatives considered** Per-task ownership, fixed provider tokens, and mutable repository author configuration do not handle accepted steering or concurrent operations. A manual account-selection action would add unnecessary setup to each turn. **Roadmap alignment** This completes the existing Multiple Human Users, MCP Tool Gateway & Apps, Secrets Manager, and Self-healing Runs capabilities. The implementation follows the maintainer-approved plan. Related work: Refs #12843, Refs #12907. Existing proposals #4618 and #8945 cover per-agent or per-worktree author configuration. This change instead follows the accepted human instruction across runtime types. Refs #11831 for governed personal connection delegation; this change preserves connection audience checks and does not use standing delegation as a personal credential fallback. ## What Changed - Add durable, ordered identity contexts and active run references. Preserve message authors through consolidation, steering, retries, delegation, approvals, routines, and restart. - Add an authenticated operation-time GitHub credential broker and local/remote managed git and gh launchers. Keep personal tokens out of the long-lived provider process. - Resolve GitHub gateway and server-side Git operations through the same responsible-person or dedicated-grant selection rules. - Make absent and unavailable GitHub credentials non-blocking at generic startup. Clear host and prior-person credentials. Keep anonymous Git access where supported. - Add run-detail identity history and the dedicated-account warning. Keep task ownership and queue-versus-steer decisions unchanged. - Preserve personal OAuth declarations through connection edits. Retain exact selected grants in the gateway. - Fix continuation races found during real acceptance: verify a warm owner before credential rotation, and wait for bounded durable runner suspension before the next run starts. - Make migrations replay-safe. Retain identity through agent/run deletion, remove it with its company, and clean terminal launcher directories before releasing execution environments. Document coordinated release and rollback. ## Verification - Full workspace typecheck, build, and token gates passed. The complete local suite passed in its normal test groups: 17,120 passing tests, including all 143 serialized server suites. After integrating the newly merged runner API work, full local typecheck and build passed again, along with 890 focused integration tests. All 31 checks on the integrated revision passed, including build, browser E2E, release registry, canary dry run, typecheck, security and all test suites. Greptile is 5/5 with all review threads resolved. - Current focused checks passed: 142 native executor tests, 67 runtime lifecycle tests, 9 durable identity tests, 75 credential/routine tests, 19 low-trust/resumption tests, and the executable migration replay test. - Authenticated browser acceptance with two Paperclip users and two GitHub accounts on one shared native agent passed. Real commits and pushes followed A → B accepted steering → queued A continuation in the same saved conversation. GitHub commit author and committer identities matched all three operations. Both runs succeeded and task ownership stayed unchanged. - Real GitHub MCP calls switched from A to B after accepted steering. A delegated subtask retained its originating identity across a server restart. - Disabling B's GitHub connection left ordinary work successful. Managed gh was unauthenticated and the provider had no inherited GH_TOKEN or GITHUB_TOKEN. - The browser displayed run-detail diagnostics and the exact dedicated-account warning. A final controller-restart check followed by another-person continuation retained the conversation, selected the correct GitHub login and Git author, and removed each terminal launcher directory. - Company-lifetime migration and all five previously failing CI suites passed locally (167 tests). Same-token gateway A → B → A and six broker/launcher boundary tests passed. - Remote callback, launcher, sandbox, and runtime contract tests passed. Both native and legacy Codex completed actual Daytona executions on the integrated revision ([campaign results](https://github.com/paperclipai/paperclip/actions/runs/34155056509)). The remote package-manager shim staging regression also passed locally. ## Risks - Deploy the migrations, server broker, launchers, and runner artifacts together. Existing processes finish with their original contract. New managed processes need the broker endpoint for GitHub operations. - Finish or stop new managed executions before rolling application code back. Keep the additive schema and identity history during rollback. - Scripts that require a persistent raw GH_TOKEN must use managed git, gh, or GitHub gateway tools. Run capabilities authorize code executing within that run to acquire its current identity; this is not hostile-code isolation within one execution principal. Managed commands prevent automatic credential carryover; arbitrary code deliberately copying a credential is outside that boundary. - Uncertain steering acknowledgement deliberately holds new credential acquisition until reconciliation. Already-started operations retain their captured identity. - GitHub private access and provider outages can still fail the specific operation that needs them. Dedicated grant failure does not fall back to personal access. ## Model Used OpenAI GPT-6 through Codex assisted implementation, review, shell execution, and browser acceptance. The exact model variant and context-window size are not exposed in this session. Tool use included TypeScript and Rust tests, database integration tests, GitHub CLI, and authenticated browser control. ## Checklist - [x] I have included a thinking path that traces from project context to this change - [x] I have specified the model used (with version and capability details) - [x] I have checked ROADMAP.md and confirmed this PR does not duplicate planned core work - [x] I have searched GitHub for duplicate or related PRs and linked them above - [x] I have either (a) linked existing issues with `Fixes: #` / `Closes #` / `Refs #` OR (b) described the issue in-PR following the relevant issue template - [x] I have not referenced internal/instance-local Paperclip issues or links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip` URLs) - [x] My branch name describes the change (e.g. `docs/...`, `fix/...`) and contains no internal Paperclip ticket id or instance-derived details - [x] I have run tests locally and they pass - [x] I have added or updated tests where applicable - [x] I have updated relevant documentation to reflect my changes - [x] I have considered and documented any risks above - [x] All Paperclip CI gates are green - [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups - [x] I will address all Greptile and reviewer comments before requesting merge --------- Co-authored-by: Paperclip <noreply@paperclip.ing> |
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1dceee9a4e |
fix(runner): persist warm Daytona workspaces (#12901)
## Thinking Path > - Paperclip manages AI agent work and the execution state for each task. > - Remote agents run in sandbox environments such as Daytona. > - Daytona keeps files while a sandbox is stopped, but deletion removes those files. > - Runner Codex did not copy successful remote workspace changes back to the host workspace. > - A warm sandbox could therefore hide data loss until Daytona replaced or deleted the sandbox. > - This pull request makes the host workspace durable after every successful turn and keeps verified reusable sandboxes warm. > - The benefit is reliable multi-turn work across warm reuse, restart, stop, and sandbox replacement. ## Linked Issues or Issue Description **What happened?** A successful native Codex turn in Daytona could leave workspace changes only in the remote sandbox. A later warm turn appeared to work because it reused that filesystem. A replacement sandbox could start from stale host data and lose the successful changes. **Expected behavior** Paperclip must merge each successful remote turn into the authoritative host workspace before it completes the run. A verified warm lease may reuse its remote files. A replacement lease must reconstruct the exact durable workspace seed. **Steps to reproduce** 1. Run Codex in a reusable Daytona environment. 2. Write a file during one successful turn. 3. Replace the Daytona sandbox before the next turn. 4. Observe that the next turn can start without the prior file on the unpatched code. Related remote workspace foundation: #10070. ## What Changed - Added explicit `host_current`, `durable_seed`, and `adopt_remote` workspace preparation modes. - Added atomic, versioned native workspace descriptors and seed archives under `PAPERCLIP_HOME`. - Added real native sandbox export and three-way host merge before terminal result completion. - Added workspace-only recovery after a proposed result. Recovery does not submit another provider turn or consume the provider retry budget. - Added fail-closed handling when a sandbox with unexported changes is gone. - Kept healthy reusable Daytona sandboxes started for legacy Codex and Runner Codex. - Kept the Runner Codex process and provider session across verified warm turns. - Added the paid `daytona-warm-continuity` browser suite. It contains exactly the legacy Codex and Runner Codex cells. Each cell performs three measured turns. - Documented `pnpm test:e2e:runner -- --suite daytona-warm-continuity`. No package script was added. - Added no database migration. The metadata format is backward compatible and idempotent. ## Verification - `pnpm typecheck` - `pnpm test:e2e:runner:unit` — 114 passed - Native workspace, finalizer, session, and environment tests — 232 passed - Daytona provider tests — 150 passed - Workspace staging and merge tests — 98 passed - Runner transport tests — 63 passed - Legacy Codex restore tests — 5 passed - Rust format and compile checks pass through root typecheck - The paid Daytona suite was not run locally because the required Daytona, OpenAI, and immutable image credentials are not present. ## Risks - The main risk is an incorrect workspace identity or merge after a crash. Durable descriptors bind the run, workspace, lease, provider lease, local root, remote root, and baseline digest. Ambiguous evidence fails closed. - The host merge may conflict with concurrent host edits. The existing three-way merge and exclusion rules handle this case and surface failures. - A deleted sandbox cannot recover unexported bytes. Paperclip now blocks with `workspace_sync_out_unrecoverable` instead of reporting success or rerunning the provider. - There is no database migration. Descriptor writes and recovery are atomic and idempotent. ## Model Used OpenAI Codex with GPT-5. The run used agentic reasoning, repository inspection, code execution, test execution, Git, and GitHub CLI tools. ## Checklist - [x] I have included a thinking path that traces from project context to this change - [x] I have specified the model used (with version and capability details) - [x] I have checked ROADMAP.md and confirmed this PR does not duplicate planned core work - [x] I have searched GitHub for duplicate or related PRs and linked them above - [x] I have either (a) linked existing issues with `Fixes: #` / `Closes #` / `Refs #` OR (b) described the issue in-PR following the relevant issue template - [x] I have not referenced internal/instance-local Paperclip issues or links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip` URLs) - [x] My branch name describes the change (e.g. `docs/...`, `fix/...`) and contains no internal Paperclip ticket id or instance-derived details - [x] I have run tests locally and they pass - [x] I have added or updated tests where applicable - [x] I have updated relevant documentation to reflect my changes - [x] I have considered and documented any risks above - [x] All Paperclip CI gates are green - [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups - [x] I will address all Greptile and reviewer comments before requesting merge |
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0f94521017 |
fix(runner): restore local session and task integrity (#12721)
## Thinking Path > - Paperclip is the control plane for agents that perform work. > - Paperclip Runner connects durable provider sessions to individual task runs through PRP. > - Provider continuity and per-run authority are different lifetimes. > - The existing implementation mixed those lifetimes and lost event metadata between provider frames, runnerd, persistence, API sanitization, and the task thread. > - That caused failed continuation, missing progress and Plans, duplicate replies, hidden failures, and unsafe recovery. > - This repair gives every heartbeat fresh authority, preserves qualified provider-session continuity, and restores one lossless presentation path without changing direct adapters. ## Linked Issues or Issue Description **What happened?** A second native heartbeat could reuse tickets, leases, command receipts, sequence state, and run identity from the first heartbeat. Provider phase and item identity could be lost before the UI read them. Redaction could corrupt protocol discriminators while still missing malformed credential tails. The task thread could fold progress into the final response, hide failures, or show more than one final answer. Native Codex also exposed approval modes that do not yet have a durable approval bridge. **Expected behavior** Each heartbeat uses a new PRP authority epoch. Codex and OpenCode preserve exact qualified provider sessions; ACPX emits an explicit continuity event when its qualified process-replacement policy is used. Every accepted provider event is presented, classified as internal, or surfaced as unsupported. The task page shows chronological progress, reasoning summaries, activity, Plans, interactions, terminal failures, and exactly one final reply. Direct adapters retain their existing path. **Steps to reproduce** 1. Enable the unified experimental Paperclip Runner setting. 2. Create a local native Codex, OpenCode, ACPX Claude, or ACPX Codex agent. 3. Run response, Plan, structured-question/resume, restart, cancellation, and failure scenarios. 4. Reload the task while active, waiting, failed, and settled. 5. On the old implementation, observe stale run authority, missing classifications, incomplete output, or duplicated/folded replies. **Paperclip version or commit** The repair is based directly on `master` at `87d05e194b643810d16d20612115acd01d735d43`. **Deployment mode** Local development with the embedded database. Related work: Refs #12616, #12646, #12666, #12685, and #12700. ## What Changed - Rotates PRP control-plane, outbox, ticket, lease, command, receipt, and sequence authority for each heartbeat while carrying forward only a validated provider-session identity. - Reads `control-plane-state.json`, validates both durable schemas and lifecycle values, resumes coherent current runs, archives qualified settled authority, and quarantines malformed or mismatched scoped state without moving ambiguous live legacy state. - Preserves Codex provider phase and stable item identities so commentary remains progress and only `final_answer` becomes final. - Adds raw OpenCode HTTP/SSE boundary coverage and canonical reasoning lifecycle mapping. - Makes ACPX normalization lossless for visible reasoning, tool lifecycle metadata, stable bounded identities, Plan revisions, structured requests, failures, and qualified process replacement. Only the compatible terminal assistant message is promoted as final. - Applies schema-aware redaction before generic JWT-shaped detection and scans every diagnostic string leaf. Malformed raw/escaped quoted credential tails are redacted in both server and durable Rust state. - Restores snapshot-style chronological task presentation, expandable tool activity, inline Plan cards, visible waiting/resume/cancel/failure states, and exactly one final answer. - Makes `never` the only qualified native Codex permission mode and rejects unsupported persisted native modes with remediation. OpenCode and ACPX policies remain intact. - Keeps the unified experimental Runner setting as the only enablement flag. Onboarding and direct Codex, Claude, and OpenCode stay on their legacy execution/finalization paths. - Adds cross-language goldens, authority/recovery/fault coverage, exact response/count assertions, and native plus legacy acceptance scenarios. ## Verification - Pull-request GitHub Actions run Rust formatting/tests, TypeScript checks, server/UI tests, builds, protocol drift checks, browser E2E, and security scans. - A separate workflow-only validation ref is pinned directly on this PR head and runs the 35-cell paid local matrix: three core scenarios plus structured-question resume and restart/resume for native Codex, native OpenCode, ACPX Claude, ACPX Codex, and direct Codex/Claude/OpenCode. Run: https://github.com/paperclipai/paperclip/actions/runs/33682434315 - Acceptance requires exact single visible replies, monotonic sequences, matching envelope discriminators, one semantic terminal, one run terminal, no unresolved interaction, no duplicate mutation, no secret leakage, provider continuity, and zero native rows for direct adapters. - Per maintainer direction, tests are running in GitHub Actions rather than on the slower local host. Only formatters and static diff checks were run locally. ## Risks - Recovery from old or partial filesystem state is sensitive. The repair fails closed, preserves active or unverifiable authority, and quarantines only state whose scoped ownership is safe to move. - Provider event formats can change. Closed validators and boundary goldens turn new or malformed events into visible diagnostics instead of silent drops. - Shared task presentation could affect direct adapters. Runtime-fact gating plus the direct-adapter matrix protect the existing path. - Managed and remote providers are not qualified here. Shared code continues to compile and fail safely, but live qualification is deferred. > For core feature work, check [`ROADMAP.md`](ROADMAP.md) first and discuss it in `#dev` before opening the PR. Feature PRs that overlap with planned core work may need to be redirected — check the roadmap first. See `CONTRIBUTING.md`. ## Model Used OpenAI Codex based on GPT-5. The exact deployed snapshot and context-window size are not exposed to this task. It used agentic reasoning, repository inspection, code editing, Git, parallel subagents, and GitHub Actions. ## Checklist - [x] I have included a thinking path that traces from project context to this change - [x] I have specified the model used (with version and capability details) - [x] I have checked ROADMAP.md and confirmed this PR does not duplicate planned core work - [x] I have searched GitHub for duplicate or related PRs and linked them above - [x] I have either (a) linked existing issues with `Fixes: #` / `Closes #` / `Refs #` OR (b) described the issue in-PR following the relevant issue template - [x] I have not referenced internal/instance-local Paperclip issues or links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip` URLs) - [x] My branch name describes the change and contains no internal Paperclip ticket id - [ ] I have run tests locally and they pass (intentionally deferred to GitHub Actions) - [x] I have added or updated tests where applicable - [x] I have updated relevant documentation to reflect my changes - [x] I have considered and documented risks above - [ ] All Paperclip CI gates are green - [ ] The paid local-provider matrix is green - [ ] Greptile is 5/5 with no open P2s, recommendations, or follow-ups - [x] I will address all Greptile and reviewer comments before requesting merge |
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fdf8c8464d |
feat(runner): add managed provider backends (#12699)
## Thinking Path > - Paperclip is the open source app people use to manage AI agents for work. > - The Paperclip Runner provides durable, provider-neutral agent execution. > - The current stack supports qualified local providers but omits the managed provider paths from the integration branch. > - Claude Managed Agents and AWS AgentCore need explicit profile qualification, durable recovery, usage accounting, and cleanup controls. > - This pull request adds those managed backends as the third part of the Runner parity stack. > - The benefit is managed execution without weakening the default-off Runner rollout gate. ## Linked Issues or Issue Description **Subsystem affected** Cross-cutting: Runner, server orchestration, database profiles, CLI, and adapter configuration UI. **Problem or motivation** The current Runner stack cannot select or execute the managed Claude Agents API or AWS Bedrock AgentCore Harness backends. It also lacks qualified profile storage and recovery checks for those remote resources. **Proposed solution** Add qualified managed and remote profiles, API and CLI management, exact provider selection, durable lifecycle handling, cumulative usage accounting, bounded cleanup, and retention acknowledgement. Keep `enableNativeRunner` default-off. **Alternatives considered** A direct copy of the old integration branch was rejected because its provider contracts, model values, credential flow, and migration history no longer match the current base. A single large parity pull request was also rejected because stacked review keeps each subsystem bounded. **Roadmap alignment** This continues the existing Runner architecture and rollout work. It does not introduce a separate execution system. **Additional context** This pull request is based on the merged #12691 and #12685 stack. It also closes the delayed security-review findings reported on #12691 by binding qualified ACPX and OpenCode launch artifacts to the bytes actually executed. A GitHub search for managed agent, AgentCore, and Claude managed work found no duplicate public issue or pull request. ## What Changed - Add Claude Managed Agents and AWS AgentCore provider executors to runnerd. - Add qualified managed and remote profile storage, routes, OpenAPI contracts, CLI commands, and migration 0237. - Validate profile ownership, enabled state, exact qualified revision, model, agent version, and secret binding before persistence and recovery. - Persist durable provider session and owned skill state for restart-safe cleanup. - Reconcile uncertain create responses and delete remote sessions before owned skills. - Track cumulative provider usage and enforce positive session spend caps. - Recover interrupted AgentCore usage at the next turn boundary by charging the prior invocation ceiling exactly once; keep the session gated until an explicit monotonic budget raise. - Isolate AgentCore AWS configuration from host profiles and credential-process/SSO configuration while preserving workload identity. - Require OpenCode 1.18.17 and fixed build-owned provider-pack artifact paths; remove the ambient executable override. - Snapshot and content-verify ACPX and OpenCode commands, scripts, and provider executables before launch. Linux executes sealed inherited descriptors; macOS uses authenticated private snapshots with retry-safe rematerialization at the spawn boundary. - Persist canonical ACPX and OpenCode launch-profile digests, reject drift across fresh recovery, and make recovery failures sticky. - Close and journal unsafe ACPX active-turn recovery before any provider bootstrap or reconnect. - Add managed provider fields to the Runner configuration UI and permission projection. - Preserve the default-off `enableNativeRunner` experimental flag. ## Verification - `pnpm -r typecheck` - `pnpm build` - Focused managed server, database, CLI, Runner TypeScript, Rust, Claude, AgentCore, ACPX, OpenCode, process-supervisor, and durable-recovery tests passed. - `cargo test -p paperclip-runner-core --lib --locked` (160 tests) - `cargo check --workspace --all-targets --locked` - Native Codex integration tests passed (60 tests); native provider tests passed (7 tests); server native-runtime tests passed (87 tests). - Verified-launch replacement, nested-spawn retry, exact-version, profile-drift, sticky-failure, and no-bootstrap active-recovery tests passed. - `git diff --check` - The PR changes 91 files. `pnpm-lock.yaml` is unchanged. The Rust workspace lockfile adds the approved `rustix` dependency used for safe descriptor handling while `#![forbid(unsafe_code)]` remains enabled. ## Risks - The provider APIs can change while they are in beta. Exact qualification and fail-closed recovery checks limit drift. - Remote cleanup can fail after a partial create. Durable ownership inventories and retry-safe deletion preserve recovery state. - Migration 0237 adds profile tables. The generated migration and snapshot pass the repository migration checks. - Managed execution can incur provider cost. Positive default spend caps and explicit retention acknowledgement limit accidental use. - An interrupted AgentCore invocation without final metadata is conservatively charged to its active session ceiling. This can overstate cost, but cannot undercount it; later work requires an explicit budget increase. - Linux qualified launches use sealed memory descriptors. macOS lacks executable-descriptor APIs, so the runner uses owner-only private snapshots and minimizes linked-path lifetime; hostile same-UID processes remain outside the documented local-host trust boundary. - The global Runner feature remains default-off. > For core feature work, check [`ROADMAP.md`](ROADMAP.md) first and discuss it in `#dev` before opening the PR. Feature PRs that overlap with planned core work may need to be redirected — check the roadmap first. See `CONTRIBUTING.md`. ## Model Used OpenAI Codex, GPT-5, with tool use, code execution, and subagent review. ## Checklist - [x] I have included a thinking path that traces from project context to this change - [x] I have specified the model used (with version and capability details) - [x] I have checked ROADMAP.md and confirmed this PR does not duplicate planned core work - [x] I have searched GitHub for duplicate or related PRs and linked them above - [x] I have either (a) linked existing issues with `Fixes: #` / `Closes #` / `Refs #` OR (b) described the issue in-PR following the relevant issue template - [x] I have not referenced internal/instance-local Paperclip issues or links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip` URLs) - [x] My branch name describes the change and contains no internal Paperclip ticket id or instance-derived details - [x] I have run tests locally and they pass - [x] I have added or updated tests where applicable - [x] I have updated relevant documentation to reflect my changes - [x] I have considered and documented any risks above - [x] All Paperclip CI gates are green - [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups - [x] I will address all Greptile and reviewer comments before requesting merge |
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4b6de5327e |
Remove cheap model profiles (#12683)
## Thinking Path > - Paperclip manages agents that use different model providers and adapters. > - Paperclip must keep agent execution rules clear and predictable. > - The cheap-model profile added a second execution mode across adapters, task recovery, APIs, and the UI. > - That mode increased configuration and recovery complexity. > - This pull request removes the cheap-model profile as a product feature. > - The benefit is one model-selection path for normal work and recovery work. ## Linked Issues or Issue Description **What existing behavior does this improve?** This change simplifies model selection across agent configuration, task execution, recovery, and adapter capabilities. **Current behavior** Paperclip exposes cheap-model profiles in adapter metadata, agent runtime configuration, task overrides, recovery rules, APIs, and the board UI. Recovery work can select a different model profile from the agent's configured model. **Proposed behavior** Paperclip uses the agent's configured model for normal work and recovery work. Status-only recovery stays limited to coordination work. The API rejects legacy model-profile configuration. A migration removes stored model-profile values from existing agent, issue, and historical revision records. **Reason and benefit** One model path reduces configuration, API, UI, and recovery complexity. It also prevents status recovery from becoming a separate product-level model-routing feature. **Breaking changes** This change removes model-profile fields and adapter capability metadata. Existing stored model-profile values are removed by an idempotent migration. The validators reject new legacy profile values with clear errors. ## What Changed - Removed model-profile types, adapter capabilities, API fields, and model selection logic. - Removed cheap-model controls from agent and task UI surfaces. - Kept status-only recovery limited to coordination context while normal continuations use the configured agent model. - Added an idempotent migration that removes stored model-profile values from agents, issues, and configuration revisions without changing issue update timestamps. - Updated tests and product documentation for the single-model behavior. ## Verification - `pnpm check:token-gates` passes. - `pnpm -r typecheck` passes. - `pnpm build` passes. - `pnpm test:run` completed with 5,607 passing tests and 8 environment-sensitive failures in unrelated fixed-port and database-deadlock suites. The same failures repeated in an isolated rerun. CI is the final clean-room result. ## Risks - This is an intentional breaking change for clients that send model-profile fields. - The migration changes legacy agent, issue, and configuration-revision JSON. It is idempotent and preserves unrelated fields and issue update timestamps. - The change is cross-cutting because the removed feature existed in adapters, shared contracts, the server, plugins, and the UI. > For core feature work, check [`ROADMAP.md`](ROADMAP.md) first and discuss it in `#dev` before opening the PR. Feature PRs that overlap with planned core work may need to be redirected — check the roadmap first. See `CONTRIBUTING.md`. ## Model Used - OpenAI Codex with `gpt-5`. Reasoning and tool use were enabled. The runtime did not expose the context-window size. ## Checklist - [x] I have included a thinking path that traces from project context to this change - [x] I have specified the model used (with version and capability details) - [x] I have checked ROADMAP.md and confirmed this PR does not duplicate planned core work - [x] I have searched GitHub for duplicate or related PRs and linked them above - [x] I have either (a) linked existing issues with `Fixes: #` / `Closes #` / `Refs #` OR (b) described the issue in-PR following the relevant issue template - [x] I have not referenced internal/instance-local Paperclip issues or links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip` URLs) - [ ] My branch name describes the change (e.g. `docs/...`, `fix/...`) and contains no internal Paperclip ticket id or instance-derived details - [ ] I have run tests locally and they pass - [x] I have added or updated tests where applicable - [x] I have updated relevant documentation to reflect my changes - [x] I have considered and documented any risks above - [x] All Paperclip CI gates are green - [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups - [x] I will address all Greptile and reviewer comments before requesting merge --------- Co-authored-by: Paperclip <noreply@paperclip.ing> |
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ee2a190626 |
Unify Paperclip Runner experimental controls (#12666)
## Thinking Path > - Paperclip is the open source app people use to manage AI agents for work. > - Paperclip Runner is an experimental execution adapter. > - The adapter and its required sandbox ingress had separate settings. > - A user could enable one setting and still have an unusable runner configuration. > - The runtime already makes one durable native or legacy decision for each run. > - This pull request uses that runtime decision for ingress authorization. > - The benefit is one clear opt-in with safe recovery for existing native runs. ## Linked Issues or Issue Description **What existing behavior does this improve?** This improves the experimental settings and transport authorization for Paperclip Runner. **Subsystem affected** Cross-cutting. This change affects the React settings UI, shared settings contracts, adapter utilities, and server runtime selection. **Current behavior** Settings shows separate Paperclip Runner and Runner Preview Ingress controls. A user can enable the runner but leave required sandbox ingress disabled. **Proposed behavior** Settings shows only Paperclip Runner. Its native runtime decision also authorizes provider WebSocket ingress when the execution target requires it. A persisted native run keeps its recovery transport after the setting is disabled. **Reason and benefit** Paperclip Runner is one experimental capability. One opt-in removes an invalid partial configuration and makes the rollout boundary easier to understand. **Breaking changes** The Runner Preview Ingress card is removed. The old `enableRunnerPreviewIngress` key remains accepted in stored settings and managed configuration, but it has no server runtime effect. The public adapter-utils input remains compatible through a deprecated alias. **Additional context** Refs: #12638, #12641, #12656. ## What Changed - Removed the separate Runner Preview Ingress card from Experimental Settings. - Made resolved native runtime selection authorize required provider ingress. - Preserved ingress recovery for persisted native runs after the rollout flag is disabled. - Kept the old settings key and adapter-utils input as deprecated compatibility contracts. - Added focused UI, runtime policy, transport, stored-settings, and managed-config regression tests. - Updated deployment documentation and feature descriptions. ## Verification - GitHub Actions will run typecheck, tests, build, policy, and browser shards. - Focused tests cover the single settings control, runtime authorization, fail-closed transport selection, the deprecated public input, and old managed configuration. - No local tests were run, per the maintainer request to use GitHub Actions for verification. - `git diff --check` passes. ## Risks Low to moderate risk. The effective ingress gate changes from a separate stored flag to the resolved native run decision. Fresh runs still require `enableNativeRunner`. Persisted native runs remain recoverable. Legacy adapters never receive ingress authorization. > For core feature work, check [`ROADMAP.md`](ROADMAP.md) first and discuss it in `#dev` before opening the PR. Feature PRs that overlap with planned core work may need to be redirected — check the roadmap first. See `CONTRIBUTING.md`. ## Model Used OpenAI Codex, GPT-5, with reasoning, tool use, and code execution. ## Checklist - [x] I have included a thinking path that traces from project context to this change - [x] I have specified the model used (with version and capability details) - [x] I have checked ROADMAP.md and confirmed this PR does not duplicate planned core work - [x] I have searched GitHub for duplicate or related PRs and linked them above - [x] I have either (a) linked existing issues with `Fixes: #` / `Closes #` / `Refs #` OR (b) described the issue in-PR following the relevant issue template - [x] I have not referenced internal/instance-local Paperclip issues or links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip` URLs) - [x] My branch name describes the change (e.g. `docs/...`, `fix/...`) and contains no internal Paperclip ticket id or instance-derived details - [ ] I have run tests locally and they pass - [x] I have added or updated tests where applicable - [x] I have updated relevant documentation to reflect my changes - [x] I have considered and documented any risks above - [x] All Paperclip CI gates are green - [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups - [x] I will address all Greptile and reviewer comments before requesting merge |
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1ed29abaa6 |
fix(runner): harden dormant provider boundaries (#12654)
## Thinking Path > - Paperclip is the open source app people use to manage AI agents for work. > - Paperclip Runner currently enables only the Codex production path. > - The package also contains dormant OpenCode and ACPX provider boundaries. > - Dormant boundaries must still fail safe before later activation work. > - Provider children must not inherit unrelated server secrets or host homes. > - Permission defaults must require interaction instead of broad automatic approval. > - This pull request hardens those boundaries without activating them. > - The benefit is a safer base for later provider-specific runnerd work. ## Linked Issues or Issue Description **What existing behavior does this improve?** This improves the inactive OpenCode and ACPX provider boundary in Paperclip Runner. **Subsystem affected** The adapter permission contract, Runner provider environment, and native execution input builder. **Current behavior** Dormant OpenCode code can inherit the full server environment. Its default permission mode allows operations. ACPX also defaults to broad approval. The provider guard can accept inherited object property names. **Proposed behavior** Use exact provider identifiers. Use interactive defaults. Allow only required OpenCode environment keys. Reject invalid proxy permission modes. **Reason and benefit** This reduces accidental authority and secret exposure before future provider activation. **Breaking changes** No production provider is activated. Codex runtime selection and Codex credential-home discovery do not change. Dormant OpenCode and ACPX callers that omit permission modes now receive safer defaults. ## What Changed - Change dormant OpenCode and ACPX permission defaults to interactive modes. - Reject prototype property names as provider identifiers. - Default dormant ACPX input to the qualified Codex agent profile. - Add an explicit OpenCode runner environment allowlist. - Exclude host homes, server credentials, database values, and Node injection options. - Add a fail-closed OpenCode proxy permission parser. - Add focused tests for defaults, filtering, and invalid values. ## Verification GitHub Actions must run: - Adapter utility tests. - Paperclip Runner tests, type checks, and build. - Server native runtime tests. - Repository test, type-check, build, policy, and security gates. No local test command was run. The repository owner requested GitHub-only verification. ## Risks Future OpenCode credential providers must add required variables to the allowlist through review. The safer defaults can pause dormant internal scenarios that relied on implicit broad approval. Production Codex behavior is unchanged. ## Model Used OpenAI Codex with the GPT-5 agent model. The work used high reasoning, repository inspection, tool use, and parallel security review. ## Checklist - [x] I have included a thinking path that traces from project context to this change - [x] I have specified the model used (with version and capability details) - [x] I have checked ROADMAP.md and confirmed this PR does not duplicate planned core work - [x] I have searched GitHub for duplicate or related PRs and linked them above - [x] I have either (a) linked existing issues with `Fixes: #` / `Closes #` / `Refs #` OR (b) described the issue in-PR following the relevant issue template - [x] I have not referenced internal/instance-local Paperclip issues or links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip` URLs) - [x] My branch name describes the change (e.g. `docs/...`, `fix/...`) and contains no internal Paperclip ticket id or instance-derived details - [ ] I have run tests locally and they pass - [x] I have added or updated tests where applicable - [x] I have updated relevant documentation to reflect my changes - [x] I have considered and documented any risks above - [ ] All Paperclip CI gates are green - [ ] Greptile is 5/5 with no open P2s, recommendations, or follow-ups - [x] I will address all Greptile and reviewer comments before requesting merge |
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131f5c4065 |
feat(runner): add administration and observability (#12641)
## Thinking Path > - Paperclip is the open source app people use to manage AI agents for work. > - Administrators need bounded controls for experimental native execution. > - The lower stack adds remote Codex execution and the task workspace. > - Operators need to configure Codex safely and inspect provider traces. > - Unsupported providers must not appear as runnable choices. > - This pull request adds Codex-only administration and observability. > - The benefit is a default-off operational surface for production diagnosis. ## Linked Issues or Issue Description Refs #12640. Refs #12616. Refs #12352. **Subsystem affected** Agent configuration, instance experimental settings, run ledger, provider trace inspector, and administrator actions. **Problem or motivation** The native runner lacks one safe operator surface for Codex permissions, lifecycle, raw trace capture, and run inspection. The integration branch also contains provider choices that the production backend cannot execute yet. **Proposed solution** Expose only the qualified Codex controls. Keep Paperclip Developer Mode and runner preview ingress off by default. Gate raw trace actions by administrator access and existing trace authorization. **Alternatives considered** Exposing unfinished providers would create configurations that fail at runtime. Always-on tracing would increase sensitive data and storage risk. **Roadmap alignment** This work supports governed Cloud and Sandbox agents and production diagnostics. ## Stack - Base PR: #12640. - Lower PRs: #12639 and #12638. - This PR contains only its 54-file administration and observability delta. - This is the final feature PR in the Codex production stack. ## What Changed - Added Codex-only Paperclip Runner permission and lifecycle controls. - Added bounded warm idle configuration. - Kept the provider field fixed to Codex. - Added administrator-only one-run raw trace requests. - Added a persistent future-run raw trace toggle. - Added trace status, metadata, ledger, and canonical runner inspection. - Added JSON-RPC request-origin grouping and finalization lineage. - Restored the stateful PRP transcript parser and focused projection tests required by trace inspection. - Added default-off Paperclip Developer Mode. - Added Honeycomb run links for authorized developer mode. - Disabled the legacy operational skill for `paperclip_runner`. - Did not expose OpenCode, ACPX, Pi, Claude Managed, or AWS runner choices. - Did not change migrations, workflows, dependencies, or `pnpm-lock.yaml`. ## Verification - GitHub Actions will run UI tests, server tests, repository typecheck, build, browser tests, security, and policy gates. - Tests cover Codex configuration defaults and bounds, administrator trace actions, persistent settings, ledger inspection, trace lineage, and Honeycomb links. - Existing server trace authorization and retention tests remain the backend authority. - Local tests were not run. The requested verification policy uses GitHub Actions for this series. - `git diff --check runner/task-workspace-experience...HEAD` passes. - The delta contains 54 files. ## Risks - Raw provider traces can contain sensitive provider data. - Existing server authorization controls access, reveal, download, retention, and deletion. - The UI gates trace actions by administrator access and developer mode. - All new instance settings remain off by default. - Fresh Paperclip Runner configuration remains Codex-only. - Direct adapters and legacy task behavior do not change in this PR. > For core feature work, check [`ROADMAP.md`](ROADMAP.md) first and discuss it in `#dev` before opening the PR. Feature PRs that overlap with planned core work may need to be redirected — check the roadmap first. See `CONTRIBUTING.md`. ## Model Used OpenAI Codex with GPT-5.6. The work used high-reasoning agent mode, repository tools, GitHub tools, and parallel code-audit agents. ## Checklist - [x] I have included a thinking path that traces from project context to this change - [x] I have specified the model used (with version and capability details) - [x] I have checked ROADMAP.md and confirmed this PR does not duplicate planned core work - [x] I have searched GitHub for duplicate or related PRs and linked them above - [x] I have either (a) linked existing issues with Fixes: / Closes / Refs OR (b) described the issue in-PR following the relevant issue template - [x] I have not referenced internal or instance-local Paperclip issues or links - [x] My branch name describes the change and contains no internal Paperclip ticket id - [ ] I have run tests locally and they pass - [x] I have added or updated tests where applicable - [x] I have updated relevant documentation to reflect my changes - [x] I have considered and documented risks above - [ ] All Paperclip CI gates are green - [ ] Greptile is 5/5 with no open P2s, recommendations, or follow-ups - [x] I will address all Greptile and reviewer comments before requesting merge |
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0a422fda52 |
feat(runner): add remote execution substrate (#12638)
## Thinking Path > - Paperclip is the open source app people use to manage AI agents for work. > - Paperclip Runner gives native runs a durable and governed execution path. > - The current native path runs on the control-plane host. > - Remote environments need an authenticated execution-target contract. > - The contract must not change direct adapters or enable new runtimes by default. > - This pull request adds the remote execution substrate and Daytona ingress. > - The benefit is a bounded base for later remote runner transport work. ## Linked Issues or Issue Description Refs #12616. Refs #12352. **Subsystem affected** Cross-cutting. This change touches runner transport, server orchestration, plugin contracts, and shared settings. **Problem or motivation** Native execution cannot resolve an authenticated runner ingress through a remote environment. The server also lacks one provider-neutral contract for remote execution targets. **Proposed solution** Add a default-off runner preview ingress capability. Add transport-neutral runner connectivity. Add remote execution target and lifecycle handling. Add a Daytona ingress implementation with redacted credentials. **Alternatives considered** A provider-specific server path would duplicate orchestration and authorization. A public endpoint without an environment contract would weaken the trust boundary. **Roadmap alignment** This work supports the Cloud and Sandbox agents milestone. It also supports self-healing runs and governed tool access. ## What Changed - Added execution-target traits for local, SSH, and sandbox environments. - Added plugin RPC contracts for runner ingress endpoints. - Added authenticated Daytona preview ingress. - Added transport-neutral PRP outbound connections. - Added remote runner artifact verification and fail-closed provider selection. - Added bounded native session resume, cancellation, and lifecycle recovery. - Preserved Codex-only selection for fresh experimental runner starts. - Preserved all direct adapter execution and finalization paths. - Removed stale Pi provider-pack requirements that security review rejected. - Kept the rollout controls off by default. - Did not change pnpm-lock.yaml, Cargo, database migrations, or GitHub workflows. ## Verification - GitHub Actions will run the repository test, typecheck, build, security, and policy gates. - Focused tests cover ingress validation, redaction, execution targets, remote lifecycle, cancellation, resume, and legacy adapter selection. - Local tests were not run. The requested verification policy uses GitHub Actions for this series. - `git diff --check origin/master...HEAD` passes. - The diff contains 52 files. ## Risks - Remote execution crosses a trust boundary. - The implementation validates target capabilities, artifact digests, provider-pack pins, and connection metadata. - The feature remains default-off. - Fresh native selection remains Codex-only. - Existing direct adapters remain on the legacy path. - This PR does not yet make remote Codex runnable. The next PR adds the Rust WSS and TLS transport. ## Model Used OpenAI Codex with GPT-5.6. The work used high-reasoning agent mode, repository tools, GitHub tools, and parallel code-audit agents. ## Checklist - [x] I have included a thinking path that traces from project context to this change - [x] I have specified the model used (with version and capability details) - [x] I have checked ROADMAP.md and confirmed this PR does not duplicate planned core work - [x] I have searched GitHub for duplicate or related PRs and linked them above - [x] I have either (a) linked existing issues with Fixes: / Closes / Refs OR (b) described the issue in-PR following the relevant issue template - [x] I have not referenced internal or instance-local Paperclip issues or links - [x] My branch name describes the change and contains no internal Paperclip ticket id - [ ] I have run tests locally and they pass - [x] I have added or updated tests where applicable - [x] I have updated relevant documentation to reflect my changes - [x] I have considered and documented risks above - [ ] All Paperclip CI gates are green - [ ] Greptile is 5/5 with no open P2s, recommendations, or follow-ups - [x] I will address all Greptile and reviewer comments before requesting merge |
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51ad751e0b |
feat(runner): integrate Codex native execution (#12616)
## Thinking Path > - Paperclip is the open source control plane for teams of AI agents. > - Agent runs currently use direct adapters and their established finalization paths. > - The new runner package needs one production integration before it can execute a real provider through the server. > - That integration must not change direct adapters or expose unsupported providers. > - The rollout must also preserve native runs that were already recorded when the feature flag changes. > - This pull request adds a default-off, Codex-only native execution path and its authority boundary. > - The benefit is a recoverable production vertical slice with explicit compatibility guards. ## Linked Issues or Issue Description **Subsystem affected** Cross-cutting server orchestration and adapter selection. **Problem or motivation** The runner package exists, but the server cannot yet start and recover a governed Codex run through it. A careless integration could also route existing direct adapters into the native runtime or lose cancellation and finalization state. **Proposed solution** Add a hidden `paperclip_runner` adapter for Codex. Keep it behind the default-off instance flag. Bind native execution, resume, cancellation, semantic tool authority, and finalization to the recorded company, issue, run, and coordinator identities. Leave every direct adapter on its existing path. **Alternatives considered** A multi-provider launch was rejected because only Codex has the complete production bridge in this series. Replacing direct adapter execution was rejected because the runner remains experimental. **Roadmap alignment** This work supports governed tool access, action attribution, and self-healing runs. It keeps the integration narrow and default-off. ## What Changed - Add the Codex-only native session executor and persisted resumption path. - Add run-scoped semantic tool projection, authorization, receipts, and idempotency. - Add audited native cancellation with durable issue and coordinator binding. - Add result fencing so a recorded result cannot reacquire the provider and run twice. - Reject fresh runner starts when the rollout flag is off while preserving recorded native recovery. - Keep direct adapters outside native status, cancellation, record creation, and finalization. - Add focused conformance, recovery, cancellation, status, portability, and compatibility coverage. ## Verification - GitHub Actions is the authoritative test environment for this large stack. - The PR policy and lightweight stack checks run while this is a middle PR. - The full required suite runs when this PR becomes the lowest unmerged or top PR. - Greptile will review this exact delta after the branch is pushed. ## Risks - The main risk is routing a legacy adapter into native execution. Runtime selection and heartbeat tests cover that boundary. - The next risk is stale or cross-company cancellation. Durable binding checks and transactional audit persistence cover it. - The adapter remains hidden and default-off. Only Codex is admitted. - There are no database migration, lockfile, or GitHub workflow changes in this PR. ## Stack 1. [Runner package, SDK, and developer tools](https://github.com/paperclipai/paperclip/pull/12608) 2. This PR: Codex production server integration 3. [Provider-neutral task-thread UI](https://github.com/paperclipai/paperclip/pull/12617) ## Model Used OpenAI Codex with GPT-5, extended reasoning, repository tools, and parallel review agents. ## Checklist - [x] I have included a thinking path that traces from project context to this change - [x] I have specified the model used (with version and capability details) - [x] I have checked ROADMAP.md and confirmed this PR does not duplicate planned core work - [x] I have searched GitHub for duplicate or related PRs and linked them above - [x] I have either (a) linked existing issues with `Fixes: #` / `Closes #` / `Refs #` OR (b) described the issue in-PR following the relevant issue template - [x] I have not referenced internal/instance-local Paperclip issues or links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip` URLs) - [x] My branch name describes the change (e.g. `docs/...`, `fix/...`) and contains no internal Paperclip ticket id or instance-derived details - [ ] I have run tests locally and they pass - [x] I have added or updated tests where applicable - [x] I have updated relevant documentation to reflect my changes - [x] I have considered and documented any risks above - [ ] All Paperclip CI gates are green - [ ] Greptile is 5/5 with no open P2s, recommendations, or follow-ups - [x] I will address all Greptile and reviewer comments before requesting merge |
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25cf079ec5 |
feat(runner): add Codex-native application integration (#12591)
## Thinking Path > - Paperclip is the open source app people use to manage AI agents for work. > - The runner package is useful only when the application can start, observe, and recover a native Codex run safely. > - Existing direct adapters must keep their current execution and finalization paths. > - The application boundary therefore needs additive persistence, authorization, coordination, and recovery behind an explicit experimental adapter. > - This pull request adds that Codex-only boundary without activating generalized providers, remote environments, or the later task/SDK surfaces. ## Linked Issues or Issue Description **Subsystem affected** Shared contracts, database persistence, adapter utilities, server native-runtime services, and the experimental Paperclip Runner adapter. **Problem or motivation** The already-landed runner package has a qualified Codex path, but the application needs durable native-run state, guarded runtime selection, authenticated coordination, tool security, finalization, and recovery before the experimental adapter can be exercised safely. **Proposed solution** Add a Codex-only `paperclip_runner` application path behind the existing default-off native-runner setting. Bind native state and coordination to company/run identity, preserve persisted-run recovery, and leave every direct adapter on its existing legacy execution path. **Alternatives considered** The earlier stack boundary introduced a generalized executor and remote-environment lifecycle here. That made this PR depend on implementations in higher PRs and changed reusable sandbox behavior globally. Those pieces are now deferred together to #12592. **Roadmap alignment** ROADMAP.md does not list a conflicting native-runner integration project. This change adds the application boundary for the existing Runner architecture. ## What Changed - Added native run/result/finalization/provider-trace persistence, shared validators, and idempotent migration/replay coverage. - Added guarded Codex-only runtime selection, authenticated PRP coordination, recovery, finalization, and interaction services. - Added run/company-bound tool-gateway authorization, credential redaction, SSRF protections, and replay-safe behavior. - Added the explicit `paperclip_runner` adapter behind the default-off rollout setting. - Preserved legacy answered-question wake projection and direct-adapter execution/finalization paths. - Hardened cancellation so only owned in-memory child processes are signaled; persisted recycled PIDs/process groups are never trusted. - Retained the narrow Claude ACPX isolated-context security follow-up discovered after #12590. - Deferred the generalized executor, provider ingress, remote lifecycle, SDK/lab/eval work, release-process changes, and lockfile. ## Verification - Changed-file delta against `master`: 133 files. - GitHub Actions is the authoritative verification environment for this PR. - Full CI, security, and Greptile review will run on this lowest unmerged stack PR. - Local tests/build/typecheck were not run because this checkout is resource constrained. - Static diff/reference checks pass, and `pnpm-lock.yaml` is unchanged. ## Risks - This touches central heartbeat and agent-route code, so legacy compatibility is the primary risk. - Runtime selection remains Codex-only and explicit; direct Codex, Claude, OpenCode, process, HTTP, and plugin adapters remain on their existing paths. - Fresh native starts fail closed while the rollout flag is off; persisted native records remain readable and recoverable. - Cancellation, company/run binding, tool calls, status decisions, and completion writes are guarded or replay-safe. > For core feature work, check [ROADMAP.md](ROADMAP.md) first and discuss it in #dev before opening the PR. Feature PRs that overlap with planned core work may need to be redirected. ## Model Used OpenAI Codex, GPT-5.6, with repository tools, code execution, and parallel agent review. ## Checklist - [x] I have included a thinking path that traces from project context to this change - [x] I have specified the model used (with version and capability details) - [x] I have checked ROADMAP.md and confirmed this PR does not duplicate planned core work - [x] I have searched GitHub for duplicate or related PRs and linked them above - [x] I have either linked existing issues or described the issue in-PR following the relevant issue template - [x] I have not referenced internal or instance-local Paperclip issues or links - [x] My branch name describes the change and contains no internal Paperclip ticket id - [ ] I have run tests locally and they pass — GitHub Actions is authoritative for this resource-constrained checkout - [x] I have added or updated tests where applicable - [x] I have updated relevant documentation to reflect my changes - [x] I have considered and documented risks above - [ ] All Paperclip CI and security gates are green - [ ] Greptile is 5/5 with no open actionable findings - [x] I will address all Greptile and reviewer comments before merge ## Stack - Position: 3 of 5 overall; lowest of 3 currently unmerged - Base: `master` - Previous: [#12590](https://github.com/paperclipai/paperclip/pull/12590), qualified Claude ACPX runtime — merged - Next: [#12592](https://github.com/paperclipai/paperclip/pull/12592), generalized Codex executor, task experience, and developer SDKs --------- Co-authored-by: Dev Agent <dev@paperclip.ing> |
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0834a0c1f7 |
feat(runner): bind ACPX profile boundary (#12387)
## Thinking Path > - Paperclip is the open source app people use to manage AI agents for work. > - The Paperclip runner needs a safe boundary before it can launch ACP-compatible agents. > - A caller-controlled command, model, environment, or frame could bypass that boundary. > - The ACPX transport contract in #12386 defines the allowed messages but does not bind a runtime profile. > - This pull request defines closed, versioned profiles and validates the launch inputs around that contract. > - The benefit is a small and reviewable trust boundary before any ACPX process can become available. ## Linked Issues or Issue Description **Agent or provider** ACPX sidecar support for the qualified Pi, Claude, and Codex ACP servers. **Why this adapter is useful** The runner needs one bounded process boundary for ACP-compatible providers. A closed profile prevents an untrusted run from selecting an arbitrary executable, package version, or model. **How the agent is invoked** A later pull request will launch an internal sidecar from an exact profile. This pull request only validates profiles, environment values, and protocol frames. It does not add an executable dependency or enable an adapter. **Additional context** This pull request is stacked on #12386. It keeps the existing direct adapters and the Codex runner path unchanged. ## What Changed - Add a closed profile table for the qualified Pi, Claude, and Codex ACP servers. - Require the exact qualified model and return an isolated profile value to callers. - Add an agent-specific environment allowlist with entry and aggregate size limits. - Add strict parsing for bounded sidecar requests and structured plan values. - Reject unknown fields, unsupported protocol versions, invalid identifiers, null bytes, cyclic values, and oversized input. ## Verification - Runner TypeScript typecheck — passed. - Runner TypeScript tests — 40 files and 362 Vitest tests passed; 11 Node contract tests passed. - `pnpm -r typecheck` — passed for all applicable workspaces. - `pnpm build` — passed, including runner binary, server, UI, and workspace packages. - Prettier and `git diff --check` — passed. - The diff contains 6 files and does not change `pnpm-lock.yaml`, a workflow, a package dependency, or a public export. ## Risks The main risk is accepting more launch state than the sidecar needs. The implementation uses an agent-specific allowlist, rejects null bytes, and enforces per-entry and aggregate bounds. This pull request does not launch a process or expose a new adapter, so production and direct-adapter behavior remain unchanged. ## Model Used OpenAI Codex with GPT-5 and repository tool use. ## Checklist - [x] I have included a thinking path that traces from project context to this change - [x] I have specified the model used (with version and capability details) - [x] I have checked ROADMAP.md and confirmed this PR does not duplicate planned core work - [x] I have searched GitHub for duplicate or related PRs and linked them above - [x] I have either linked an existing public item or described the issue in this PR - [x] I have not referenced internal or instance-local Paperclip issues or links - [x] My branch name describes the change and contains no internal task identifier - [x] I have run the affected tests locally and they pass - [x] I have added or updated tests where applicable - [x] I have documented the compatibility and security boundary - [ ] All applicable GitHub Actions are green - [ ] Greptile is 5/5 with every actionable comment resolved - [x] I will address all review findings before requesting merge |
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b3343dbd64 |
feat(connections): add self-serve intent runtime (#12345)
## Thinking Path > - Paperclip is the open source app people use to manage AI agents for work. > - Agents need a governed way to request app connections during issue work. > - The catalog now describes the available providers and setup methods. > - A request must become a durable, company-scoped intent before an operator acts on it. > - This pull request adds that intent runtime across server, agent, CLI, and shared contracts. > - The benefit is a safe bridge from agent need to operator-approved setup. ## Linked Issues or Issue Description Refs #11965 This is stack 7 of 11. It depends on stack 6 and replaces another reviewable part of #11965. ## What Changed - Add connection intent types, validation, service logic, and routes. - Add agent runtime tools and CLI support for connection requests. - Add issue-thread interaction support for connection intents. - Add runtime, route, adapter, and contract tests. - Hold the final resolved-continuation row lock through asynchronous adapter preparation until an actual process spawn, so parking or reassignment cannot cross that boundary. - Report Hermes Gateway's first remote run request through the shared dispatch hook so the resolved-intent lock is released at the true dispatch boundary. - Revalidate the addressed user's live non-viewer membership and connection-management authority for every intent mutation, including OAuth completion. ## Verification - `pnpm --filter @paperclipai/server typecheck` - `pnpm --filter @paperclipai/server exec vitest run src/__tests__/tool-access-service.test.ts` - Result: 176 tests passed. - `pnpm build` - `pnpm --filter @paperclipai/server exec vitest run src/__tests__/heartbeat-stale-queue-invalidation.test.ts` (32 passed; includes non-process dispatch lock-release coverage) - `pnpm exec vitest run --project @paperclipai/server server/src/__tests__/connection-intents-service.test.ts -t "addressed-user mutation"` (1 passed) - `pnpm exec vitest run --project @paperclipai/server server/src/__tests__/tool-access-service.test.ts -t "binds OAuth callback completion to the initiating board session"` (1 passed) - `pnpm --filter @paperclipai/hermes-paperclip-adapter test -- src/gateway/server/execute.test.ts` (23 passed; includes dispatch-hook ordering and exactly-once coverage) - `pnpm --filter @paperclipai/hermes-paperclip-adapter typecheck` ## Risks - A malformed intent could create an unusable operator request. - Validators and company checks reject invalid or cross-company requests. - The final continuation gate holds the issue row lock through adapter preparation until process or remote dispatch; later operator changes use the normal active-run interruption path. - The change does not add a database migration. > I checked `ROADMAP.md`. This stack continues the existing app connection work from #11965 and does not duplicate another planned item. ## Model Used OpenAI Codex, GPT-5. The runtime model ID and context window were not exposed. The model used reasoning, tool use, and code execution. ## Checklist - [x] I have included a thinking path that traces from project context to this change - [x] I have specified the model used (with version and capability details) - [x] I have checked ROADMAP.md and confirmed this PR does not duplicate planned core work - [x] I have searched GitHub for duplicate or related PRs and linked them above - [x] I have linked the public source pull request with `Refs #` - [x] I have not referenced internal or instance-local Paperclip issues or links - [x] My branch name describes the change and contains no internal Paperclip ticket id or instance-derived details - [x] I have run tests locally and they pass - [x] I have added or updated tests where applicable - [x] I have updated relevant documentation to reflect my changes - [x] I have considered and documented any risks above - [x] All Paperclip CI gates are green - [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups - [x] I will address all Greptile and reviewer comments before requesting merge --------- Co-authored-by: Paperclip <noreply@paperclip.ing> |
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cabc9146d0 |
feat(apps): add secure remote MCP and PostHog setup (#12339)
## Thinking Path > - Paperclip is the open source app people use to manage AI agents for work. > - Apps give those agents governed access to external tools. > - Remote MCP setup needs secure endpoint validation and durable credentials. > - PostHog needs both browser sign-in and personal API key setup paths. > - This pull request adds the shared remote MCP foundation and the PostHog definition. > - The benefit is a secure and reusable base for later app connection work. ## Linked Issues or Issue Description Refs #11965 This is stack 1 of 11. It replaces the first reviewable part of #11965. ## What Changed - Add guarded remote MCP setup and credential handling. - Add PostHog OAuth and API key connection methods. - Add focused server, shared contract, and UI coverage. - Keep the migration replay-safe and idempotent. - Give the late-close security regression the same 10-second CI headroom as the adjacent real-timer handshake test. - Synchronize fake-timer handshake tests at the exact ensure-session boundary so real filesystem setup cannot race the fake deadline. - Drive PTY overflow coverage only after listener registration so scheduling cannot reorder the test fixture. ## Verification - pnpm exec vitest run packages/adapter-utils/src/acpx-engine/execute.test.ts server/src/__tests__/plugin-worker-manager.test.ts (220 passed; affected cases also passed five focused stress repetitions) - `pnpm exec vitest run packages/adapter-utils/src/acpx-engine/execute.test.ts -t "never leaks a sandbox-provided value from a late close rejection into logs or the result"` (1 passed) - `pnpm exec vitest run packages/adapter-utils/src/acpx-engine/execute.test.ts -t "never promotes a late ensureSession resolution|closes a late-resolving real handle exactly once"` (2 passed) - `pnpm -r typecheck` - `pnpm --filter @paperclipai/server exec vitest run src/__tests__/tool-access-service.test.ts` - `pnpm --filter @paperclipai/db check:migrations` - `pnpm build` ## Risks - Remote endpoint validation can reject configurations that previously passed without checks. - OAuth configuration errors can block setup until the operator corrects the provider settings. - The migration uses guarded statements so repeated execution is safe. - The test-only synchronization changes do not affect runtime behavior; they remove filesystem/fake-clock and listener-registration races observed under parallel CI load. > I checked `ROADMAP.md`. This stack continues the existing app connection work from #11965 and does not duplicate another planned item. ## Model Used OpenAI Codex, GPT-5. The runtime model ID and context window were not exposed. The model used reasoning, tool use, and code execution. ## Checklist - [x] I have included a thinking path that traces from project context to this change - [x] I have specified the model used (with version and capability details) - [x] I have checked ROADMAP.md and confirmed this PR does not duplicate planned core work - [x] I have searched GitHub for duplicate or related PRs and linked them above - [x] I have either (a) linked existing issues with `Fixes: #` / `Closes #` / `Refs #` OR (b) described the issue in-PR following the relevant issue template - [x] I have not referenced internal/instance-local Paperclip issues or links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip` URLs) - [x] My branch name describes the change and contains no internal Paperclip ticket id or instance-derived details - [x] I have run tests locally and they pass - [x] I have added or updated tests where applicable - [x] I have updated relevant documentation to reflect my changes - [x] I have considered and documented any risks above - [x] All Paperclip CI gates are green - [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups - [x] I will address all Greptile and reviewer comments before requesting merge --------- Co-authored-by: Paperclip <noreply@paperclip.ing> |
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a20a4944ec |
feat: add Grok device login to the sandbox login panel (#12469)
## Thinking Path > - Paperclip is the open source app people use to manage AI agents for work > - Paperclip uses adapters to connect agents and model providers to its control plane > - The sandbox login panel supports displayed-code login for selected adapters > - Grok users need the same login path and a private credential home for later runs > - This pull request adds Grok support to the shared device-login path and preserves the existing Codex path > - The benefit is one secure login flow for both adapters with company-scoped credential storage ## Linked Issues or Issue Description **Agent or provider** Grok Local needs displayed-code login support in the sandbox login panel. **Why this adapter is useful** This change lets users sign in to Grok from the sandbox login panel. It also gives later Grok runs access to the stored credential. **How the agent is invoked** The Grok local adapter uses its login command through the shared displayed-code login flow. Later runs receive the managed home through `GROK_HOME`. **Additional context** The change uses adapter-scoped login lifecycle handling. It stores the credential in a company-scoped directory with mode `0700`, and it stores the credential file with mode `0600`. ## What Changed - Rename the shared device-login modules to adapter-neutral names. - Scope the shared login lifecycle to a closed adapter set. - Return the device-login URL that the provider prints. - Add the Grok prompt parser, login command, capability, and login panel entry. - Store the Grok credential in a private, company-scoped home directory. - Pass `GROK_HOME` to later Grok runs. - Add tests for the Grok adapter, the Daytona sandbox provider, the server login path, and the user interface. ## Verification - Run `pnpm vitest run packages/adapters/grok-local/src/server/adapter-auth-promotion.test.ts`. - Run the Grok adapter package suite. - Run the Daytona sandbox provider suite. - Run the server device-login suites. - Run the user interface suite. - Confirm the full CI suite passes. ## Risks The change extends shared login lifecycle code to another adapter. A regression could affect Codex login. The credential path uses explicit `chmod` calls to keep the directory at mode `0700` and the file at mode `0600`. ## Model Used OpenAI Codex, GPT-5. The runtime used tool calls and code review support. The runtime did not provide a context-window value. ## Checklist - [x] I have included a thinking path that traces from project context to this change - [x] I have specified the model used (with version and capability details) - [x] I have checked ROADMAP.md and confirmed this PR does not duplicate planned core work - [x] I have searched GitHub for duplicate or related PRs and linked them above - [x] I have either (a) linked existing issues with `Fixes: #` / `Closes #` / `Refs #` OR (b) described the issue in-PR following the relevant issue template - [x] I have not referenced internal/instance-local Paperclip issues or links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip` URLs) - [x] My branch name describes the change (e.g. `docs/...`, `fix/...`) and contains no internal Paperclip ticket id or instance-derived details - [x] I have run tests locally and they pass - [x] I have added or updated tests where applicable - [x] I have updated relevant documentation to reflect my changes - [x] I have considered and documented any risks above - [x] All Paperclip CI gates are green - [ ] Greptile is 5/5 with no open P2s, recommendations, or follow-ups - [x] I will address all Greptile and reviewer comments before requesting merge --------- Co-authored-by: Paperclip <noreply@paperclip.ing> |
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64b7dce0ad |
refactor(adapter-utils): replace the process-wide byte ledger with route-local byte bounds (#12465)
## Thinking Path > - Paperclip is the open source app people use to manage AI agents for work. > - The adapter layer carries sandbox requests to host processes. > - The HTTP/2 bridge used one process-wide byte ledger for all routes. > - One busy route could exhaust that shared budget and move another route to file transport. > - This pull request gives each host retention site a fixed byte bound and limits concurrent HTTP/2 streams. > - The benefit is local protection: one route cannot consume the byte budget of another route. ## Linked Issues or Issue Description **What happened?** The HTTP/2 bridge used one aggregate byte ledger for retained bytes across all routes. A busy route could exhaust the shared budget and force an unrelated route to use file transport. **Expected behavior** Each route should protect its own retained bytes. A reset on one HTTP/2 stream should cancel only that stream's host forward. **Steps to reproduce** 1. Start the HTTP/2 bridge with multiple sandbox routes. 2. Send enough retained data through one route to reach the aggregate byte limit. 3. Send a request through a sibling route. 4. Observe that the sibling route can fall back to file transport because the first route used the shared ledger. **Paperclip version or commit** `47639e227e78e3c5e0dd1a3c0e2d792fe86895a3` **Deployment mode** Built from source with the adapter-utils and server test suites. ## What Changed - Bound each host retention site with a fixed local byte limit. - Limited concurrent live HTTP/2 streams with one built-in stream limit. - Bound each host forward and response-body read to its own HTTP/2 stream lifetime. - Removed the process-wide byte ledger, its environment override, its metrics, and its file-transport fallbacks. - Added tests for the stream limit, host body budget, and sibling-stream cancellation. ## Verification - Run `pnpm vitest run --project adapter-utils`. - Confirm that 996 adapter-utils tests pass. - Confirm that `test_live_forward_work_never_passes_the_stream_limit` passes. - Confirm that `test_the_host_body_budget_matches_the_stream_limit` passes. - Confirm that the sibling-stream cancellation test passes. - Run `pnpm tsc --noEmit`. - Confirm that all pull request checks pass. ## Risks The bridge no longer uses a process-wide byte ledger. A local bound or stream limit that is too low can reject or delay valid work. The tests cover the new limits and stream cancellation behavior. ## Model Used OpenAI GPT-5 Codex. Runtime model ID: GPT-5. The model used code execution and repository tools. The runtime does not expose the context window size. ## Checklist - [x] I have included a thinking path that traces from project context to this change - [x] I have specified the model used (with version and capability details) - [x] I have checked ROADMAP.md and confirmed this PR does not duplicate planned core work - [x] I have searched GitHub for duplicate or related PRs and linked them above - [x] I have either (a) linked existing issues with `Fixes: #` / `Closes: #` / `Refs #` OR (b) described the issue in-PR following the relevant issue template - [x] I have not referenced internal/instance-local Paperclip issues or links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip` URLs) - [x] My branch name describes the change (e.g. `docs/...`, `fix/...`) and contains no internal Paperclip ticket id or instance-derived details - [x] I have run tests locally and they pass - [x] I have added or updated tests where applicable - [x] I have updated relevant documentation to reflect my changes - [x] I have considered and documented any risks above - [x] All Paperclip CI gates are green - [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups - [x] I will address all Greptile and reviewer comments before requesting merge --------- Co-authored-by: Paperclip <noreply@paperclip.ing> |
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e127faa14c |
fix(adapter-utils): bound the ACP startup handshake and fence the abandoned session promise (#12454)
## Thinking Path > - Paperclip is the open source app people use to manage AI agents for work. > - Adapter utilities start and control agent sessions. > - The ACP startup handshake can stay pending when the sandbox transport closes. > - A pending handshake keeps the run active and prevents a clear operator result. > - This pull request bounds the handshake and fences its abandoned promise. > - The result gives each startup failure a terminal state and a safe host-authored diagnostic. ## Linked Issues or Issue Description No matching public issue or pull request appeared in the GitHub search for this failure. The issue details follow. **What happened?** The adapter engine awaited `runtime.ensureSession()` without a startup bound. A lost sandbox transport could leave the await pending. **Expected behavior** The engine must end the run when the startup deadline expires or the duplex transport closes. A late session result must not reopen the settled run. **Steps to reproduce** 1. Start an ACP-backed agent run. 2. Keep the ACP initialization call pending. 3. Let the startup deadline expire or close the duplex transport. 4. Confirm that the run reaches a terminal state and that a late session result does not reopen it. **Paperclip version or commit** `66e1c0df8b23cb8354b36dd446d9548dc4389191` merge base. **Deployment mode** Local dev (`pnpm dev`). **Installation method** Built from source (`pnpm dev`). **Agent adapter(s) involved** Custom / external plugin adapter. **Database mode** Not database-related. **Relevant logs or output** The new tests use fixed host-authored diagnostics for handshake guard failures and late close failures. **Additional context** The change updates the execution semantics document and adds regression coverage. The three existing failures in `execute.test.ts` also occur at the merge base. ## What Changed - Bound `runtime.ensureSession()` with a startup deadline and a duplex transport loss check. - Added terminal error codes for handshake timeout and transport loss. - Fenced late session resolution and rejection so the settled run has one owner. - Suppressed sandbox-controlled diagnostic values on the guard-failure and late-close paths. - Added regression tests for timeout, transport loss, late resolution, and late close rejection. - Documented the startup live-path contract. ## Verification - `pnpm --filter @paperclipai/adapter-utils exec tsc --noEmit` exits 0. - The engine test suite runs from the repository root. - The new regression cases pass. - The three known failures remain the only failures and also fail at the merge base. The board approved this pre-existing test exception. - Cold start and session resume cases pass. - All required GitHub checks pass. - Greptile reports 5/5 with no open P2 findings, recommendations, or follow-ups. ## Risks The startup guard changes only the ACP startup path. A slow but valid startup can now end at the configured deadline. The fence closes a late handle once and records fixed host-authored diagnostics. ## Model Used OpenAI Codex, GPT-5, current model version, tool use and code execution, with the full task context. ## Checklist - [x] I have included a thinking path that traces from project context to this change - [x] I have specified the model used (with version and capability details) - [x] I have checked ROADMAP.md and confirmed this PR does not duplicate planned core work - [x] I have searched GitHub for duplicate or related PRs and linked them above - [x] I have either (a) linked existing issues with `Fixes: #` / `Closes: #` / `Refs #` OR (b) described the issue in-PR following the relevant issue template - [x] I have not referenced internal/instance-local Paperclip issues or links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip` URLs) - [x] My branch name describes the change (e.g. `docs/...`, `fix/...`) and contains no internal Paperclip ticket id or instance-derived details - [x] I have run tests locally. Three pre-existing failures remain and have an approved exception. - [x] I have added or updated tests where applicable - [x] I have updated relevant documentation to reflect my changes - [x] I have considered and documented any risks above - [x] All Paperclip CI gates are green - [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups - [x] I will address all Greptile and reviewer comments before requesting merge --------- Co-authored-by: Paperclip <noreply@paperclip.ing> |
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b2752b21d5 |
fix(adapter-utils): allow process sessions without birthtime (#12451)
## Thinking Path > - Paperclip is the open source app people use to manage AI agents for work. > - Remote agent adapters use a process-session wrapper inside a sandbox. > - Some supported sandbox filesystems do not report inode creation time. > - The wrapper rejects a zero creation time before it launches the agent. > - This pull request accepts that filesystem shape and keeps the existing change-time probe. > - The benefit is that valid sandbox runs can start without a birth-time field. ## Linked Issues or Issue Description **What happened?** The remote process-session wrapper exited before it launched the agent when the sandbox filesystem reported `birthtimeMs` as zero. **Expected behavior** The wrapper must start on a filesystem that does not report inode creation time. **Steps to reproduce** 1. Start the remote process-session wrapper. 2. Make `lstat()` report a zero `birthtimeMs` for its session directory. 3. Observe that the pre-fix wrapper terminates before the child process starts. **Paperclip version or commit** Reproduced from `66e1c0df8b23cb8354b36dd446d9548dc4389191`. **Deployment mode** Self-hosted server with a remote sandbox runtime. ## What Changed - Allow a zero reported creation time for process-session directories. - Keep the probe that rejects a creation time copied from change time. - Add a regression test that launches and stops a session with zero birth time. ## Verification - `npx vitest run packages/adapter-utils/src/execution-target-stdin-race.test.ts` - `pnpm --filter @paperclipai/adapter-utils typecheck` ## Risks A filesystem without creation time can reduce the precision of sandbox-local path-swap detection. This change does not change host-file or Paperclip API authority. A follow-up will review that larger security posture alignment. > I checked `ROADMAP.md`. This is a focused compatibility bug fix for the existing sandbox-agent roadmap area. ## Model Used OpenAI Codex — GPT-5.6. The exact deployment suffix and context-window size are not exposed. The model used reasoning, shell tools, and code execution. ## Checklist - [x] I have included a thinking path that traces from project context to this change - [x] I have specified the model used (with version and capability details) - [x] I have checked ROADMAP.md and confirmed this PR does not duplicate planned core work - [x] I have searched GitHub for duplicate or related PRs and linked them above - [x] I have either (a) linked existing issues with `Fixes: #` / `Closes #` / `Refs #` OR (b) described the issue in-PR following the relevant issue template - [x] I have not referenced internal/instance-local Paperclip issues or links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip` URLs) - [x] My branch name describes the change (e.g. `docs/...`, `fix/...`) and contains no internal Paperclip ticket id or instance-derived details - [x] I have run tests locally and they pass - [x] I have added or updated tests where applicable - [x] I have updated relevant documentation to reflect my changes - [x] I have considered and documented any risks above - [x] All Paperclip CI gates are green - [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups - [x] I will address all Greptile and reviewer comments before requesting merge Co-authored-by: Paperclip <noreply@paperclip.ing> |
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dc7a1a020a |
fix(adapter-utils): skip the remote session close when the duplex channel is already lost (#12394)
## Thinking Path
> - Paperclip is the open source app people use to manage AI agents for
work
> - The adapter runtime settles each run through a duplex control
channel
> - A lost channel can leave the remote session-close call without a
usable peer
> - The call has no deadline, so run teardown can wait for the full
adapter timeout
> - This pull request skips that remote call after the runtime latches
channel loss
> - The benefit is faster run finalization while the local cleanup
effects remain
## Linked Issues or Issue Description
**What happened?**
The run teardown placed a remote session-close call over a duplex
control channel that the runtime had already latched as lost. The call
blocked until the adapter execution timeout released it.
**Expected behavior**
Run teardown should release the local warm handle and continue when the
duplex control channel has already failed.
**Steps to reproduce**
1. Start an adapter run with the duplex control channel.
2. Latch a channel-loss state before settlement.
3. Use a runtime whose close call never resolves.
4. Confirm that teardown returns without a remote close call.
**Paperclip version or commit**
Commit
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b06034d762 |
Write mode-constrained inbound files directly to their target (#12320)
## Thinking Path > - Paperclip is the open source app people use to manage AI agents for work > - Adapter utilities transfer files between the host and an agent environment > - A sandbox target already provides the security boundary for inbound files > - The generic fallback adds a temporary file and a rename that do not add protection inside that boundary > - This pull request writes a mode-constrained inbound file directly to its target and applies the mode after the write > - The benefit is a simpler transfer path while host targets keep the strict pre-write mode rule ## Linked Issues or Issue Description **What existing behavior does this improve?** The inbound file-sync fallback for a mode-constrained file stages the file under a temporary name, applies the mode, and renames the file into place. **Subsystem affected** `packages/adapter-utils` and `packages/plugins`. **Current behavior** A sandbox target uses a temporary path before it receives the file. The host then changes the mode and renames the file to the target path. **Proposed behavior** A sandbox target receives the file at its target path. The host applies the mode after the write. A host target still applies the mode before the first byte. **Reason and benefit** The sandbox boundary already protects the target. The direct write removes an unnecessary staging path and rename. **Breaking changes** None. The directory path and outbound transfer path keep their existing behavior. ## What Changed - Write a mode-constrained single-file inbound transfer directly to the sandbox target. - Apply the mode after the direct write and keep the confinement check before post-upload commands. - Scope the protocol comment by transfer direction and preserve the strict host-target rule. - Keep directory inbound transfers and outbound transfers unchanged. ## Verification - Run the targeted unit suite for the changed package. - Verify the suite covers direct target writes, post-write mode application, and confinement rejection. - Run `tsc --noEmit` for both changed packages. - Review the full GitHub Actions check set after the PR opens. ## Risks - A sandbox provider that assumes a temporary inbound path could expose a behavior mismatch. - The confinement check remains before post-upload commands, which limits escape risk. - Host targets keep the pre-write mode rule, so host permission behavior does not change. ## Model Used OpenAI GPT-5. This model assisted with Git operations, PR preparation, review coordination, and tool use. Context window size and reasoning mode are not exposed by the runtime. ## Checklist - [x] I have included a thinking path that traces from project context to this change - [x] I have specified the model used (with version and capability details) - [x] I have checked ROADMAP.md and confirmed this PR does not duplicate planned core work - [x] I have searched GitHub for duplicate or related PRs and linked them above - [x] I have either (a) linked existing issues with `Fixes: #` / `Closes #` / `Refs #` OR (b) described the issue in-PR following the relevant issue template - [x] I have not referenced internal/instance-local Paperclip issues or links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip` URLs) - [x] My branch name describes the change (e.g. `docs/...`, `fix/...`) and contains no internal Paperclip ticket id or instance-derived details - [x] I have run tests locally and they pass - [x] I have added or updated tests where applicable - [x] I have updated relevant documentation to reflect my changes - [x] I have considered and documented any risks above - [x] All Paperclip CI gates are green - [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups - [x] I will address all Greptile and reviewer comments before requesting merge --------- Co-authored-by: Paperclip <noreply@paperclip.ing> |
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e628cf35da |
fix(adapter-utils): harden the wrapper birth-time probe with exclusive create and identity-aware cleanup (#12248)
## Thinking Path > - Paperclip is the open source app people use to manage AI agents for work. > - Adapter utilities run process sessions in local and remote environments. > - The remote process-session wrapper uses a probe file to verify directory creation time. > - A peer could pre-create the probe path or replace it before cleanup. > - This pull request uses exclusive create and file-descriptor identity checks to protect the probe. > - The benefit is safer cleanup and fail-closed behavior at the sandbox boundary. ## Linked Issues or Issue Description **What existing behavior does this improve?** The remote process-session wrapper creates and removes a birth-time probe file. The old path-based flow did not prove that the wrapper created the path or that the path still named the same file. **Current behavior** A sandbox peer can race with the probe path. The peer can pre-create a symbolic link or replace the probe before cleanup. The wrapper can then inspect or remove an object that it did not create. **Proposed behavior** The wrapper creates the probe with exclusive create. It reads `(dev, ino, ctimeMs)` from the open file descriptor. It removes the path only when a final identity read matches the created file. **Reason and benefit** This change prevents symlink-following during creation and avoids removal of a peer's replacement object. The wrapper still fails closed when it cannot prove a real creation time. **Breaking changes** None. The wrapper keeps its existing fail-closed capture behavior. ## What Changed - Create the birth-time probe with `fs.open(path, "wx")`. - Read probe identity with `fstat` from the open descriptor. - Remove the probe only after a matching final identity read. - Add focused race tests for ordinary cleanup and file, directory, and symbolic-link replacement. ## Verification - Run `pnpm --filter @paperclipai/adapter-utils exec tsc --noEmit`. - Run the focused suite `packages/adapter-utils/src/execution-target-stdin-race.test.ts`. - Confirm that the focused suite passes all 33 tests. ## Risks The change affects shared wrapper source for local and remote process sessions. An identity read or cleanup failure leaves the probe in place and stops capture. The focused tests cover the new race paths. ## Model Used OpenAI Codex, GPT-5, tool use and code execution. The model reviewed and prepared this pull request from the supplied implementation and test results. ## Checklist - [x] I have included a thinking path that traces from project context to this change - [x] I have specified the model used (with version and capability details) - [x] I have checked ROADMAP.md and confirmed this PR does not duplicate planned core work - [x] I have searched GitHub for duplicate or related PRs and linked them above - [x] I have either (a) linked existing issues with `Fixes: #` / `Closes #` / `Refs #` OR (b) described the issue in-PR following the relevant issue template - [x] I have not referenced internal/instance-local Paperclip issues or links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip` URLs) - [x] My branch name describes the change (e.g. `docs/...`, `fix/...`) and contains no internal Paperclip ticket id or instance-derived details - [x] I have run tests locally and they pass - [x] I have added or updated tests where applicable - [x] I have updated relevant documentation to reflect my changes - [x] I have considered and documented any risks above - [x] All Paperclip CI gates are green - [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups - [x] I will address all Greptile and reviewer comments before requesting merge --------- Co-authored-by: Paperclip <noreply@paperclip.ing> |
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4277ecbb2e |
fix(adapter-utils): terminate the remote process-session wrapper deterministically on bridge stop (#12244)
## Thinking Path > - Paperclip is the open source app people use to manage AI agents for work. > - Adapter utilities run remote process-session wrappers for sandbox work. > - A wrapper can outlive its host run when the host removes its session directory during shutdown. > - A failed directory read can look like an empty queue, so the wrapper can poll forever. > - This pull request adds an explicit shutdown acknowledgement and fail-closed identity checks. > - The benefit is deterministic wrapper cleanup without killing an unrelated session. ## Linked Issues or Issue Description Refs: #11916 **What happened?** Remote process-session wrappers could remain after a host run ended. The host could remove the session directory before the wrapper read the shutdown marker. The wrapper then treated directory errors as an empty queue and continued to poll. **Expected behavior** The host must receive an explicit shutdown acknowledgement before it treats the wrapper as stopped. The wrapper must stop when its session identity becomes invalid or untrusted. **Steps to reproduce** 1. Start a remote process-session wrapper. 2. Stop the bridge while the wrapper polls its session directory. 3. Remove the session directory during the poll. 4. Observe that the wrapper must terminate with its child. **Paperclip version or commit** `7cfbd1ecbe4a40261ba51fed07f624524352ada2` **Deployment mode** Built from source with the adapter-utils test suite. ## What Changed - Add a shutdown control file and wait for a bounded `shutdownAck` before session cleanup. - Require `shutdownAck` as proof of host-side shutdown. - Capture and verify session and stdin directory identity before each poll. - Terminate and latch the wrapper on missing, changed, linked, non-directory, or untrusted paths. - Reject unusable creation times and treat all identity-check `lstat` errors as terminal. - Add focused regression coverage for shutdown races and identity failures. ## Verification - `npx vitest run packages/adapter-utils/src/execution-target-stdin-race.test.ts` passes. - The full execution-target set passes: 175 tests across three files. - The `packages/adapter-utils` typecheck passes with `tsc --noEmit`. - CI will run on this pull request. - Greptile will review the pull request. ## Risks - A platform with unreliable directory creation times can stop a wrapper earlier than before. This fail-closed result prevents an orphan. - A transient identity-check error now stops the wrapper. This favors cleanup over continued polling when the session identity cannot be trusted. - Session cleanup remains unconditional after the bounded acknowledgement wait. ## Model Used OpenAI Codex — GPT-5. Context window size is not exposed in this run. The model used tool calls and code execution. ## Checklist - [x] I have included a thinking path that traces from project context to this change - [x] I have specified the model used (with version and capability details) - [x] I have checked ROADMAP.md and confirmed this PR does not duplicate planned core work - [x] I have searched GitHub for duplicate or related PRs and linked them above - [x] I have either (a) linked existing issues with `Fixes: #` / `Closes #` / `Refs #` OR (b) described the issue in-PR following the relevant issue template - [x] I have not referenced internal/instance-local Paperclip issues or links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip` URLs) - [x] My branch name describes the change (e.g. `docs/...`, `fix/...`) and contains no internal Paperclip ticket id or instance-derived details - [x] I have run tests locally and they pass - [x] I have added or updated tests where applicable - [x] I have updated relevant documentation to reflect my changes - [x] I have considered and documented any risks above - [x] All Paperclip CI gates are green - [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups - [x] I will address all Greptile and reviewer comments before requesting merge --------- Co-authored-by: Paperclip <noreply@paperclip.ing> |
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039a547962 |
fix(adapter-utils): make SSH env-lab fixture teardown deterministic (#12238)
## Thinking Path
> - Paperclip is the open source app people use to manage AI agents for
work
> - Agent adapters use SSH environment fixtures to test process behavior
> - The SSH fixture detached its listener process from the test process
> - Teardown removed the fixture directory without stopping and awaiting
that listener
> - This pull request validates fixture state, stops the listener with
bounded escalation, and waits before directory removal
> - The benefit is deterministic test cleanup without orphan listeners
or unsafe signals
## Linked Issues or Issue Description
**What happened?**
The SSH environment fixture detached its listener process. Test teardown
removed the temporary fixture directory without stopping and awaiting
the listener. Repeated test runs left orphan listeners that held
loopback ports.
**Expected behavior**
The fixture teardown stops its listener, waits for exit, and then
removes the fixture directory. A forged state file must not signal an
unrelated process.
**Steps to reproduce**
1. Run the SSH fixture test repeatedly.
2. Inspect listener processes after each run.
3. Observe orphan listeners or ports that remain held.
**Paperclip version or commit**
Commit
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198fc8b281 |
fix(adapter-utils): harden the referenced-project ignore scan (#12214)
## Thinking Path
> - Paperclip is the open source app people use to manage AI agents for
work
> - Agent adapters stage referenced projects into controlled sandboxes
> - The ignore scan must preserve exact Git path bytes and fail closed
on unsafe input
> - Unbounded ignored-path data and raw diagnostics can harm resource
use or expose host details
> - This pull request adds exact path parsing, input bounds, fixed
failure categories, and saturation-only retry
> - The benefit is safer and more predictable referenced-project staging
## Linked Issues or Issue Description
**What happened?**
The referenced-project ignore scan trimmed NUL-delimited Git paths. It
also accepted a large ignored-path set and exposed raw failure details
through staging errors and warnings.
**Expected behavior**
The scan must preserve leading and trailing whitespace in Git paths. It
must reject oversized ignored-path data and expose only fixed failure
categories.
**Steps to reproduce**
1. Run the referenced-project ignore scan with paths that start or end
with whitespace.
2. Provide more than 10,000 ignored entries or more than 2 MiB of path
bytes.
3. Trigger a scan failure and inspect the reported reason.
**Paperclip version or commit**
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a9d0927fe8 |
fix(adapters): restore Paperclip skill for legacy runners (#12225)
<!-- Write all pull request text in Simplified Technical English (ASD-STE100): short sentences, one instruction per sentence, simple approved vocabulary, and the active voice. --> ## Thinking Path > - Paperclip is the open source app people use to manage AI agents for work. > - Legacy local adapters run agents that use the Paperclip skill for the control-plane workflow. > - PR #7029 removed the required-skill fallback and made runtime skill selection depend only on stored preferences. > - No migration or runtime fallback replaced that behavior for existing agents or non-CEO agents. > - PR #12138 added core skills to new CEOs, and PR #12147 added Claude skill discovery. These changes did not mount the operational skill for all legacy agents. > - This pull request makes the operational skill a legacy adapter runtime invariant. It keeps all other skills configurable. > - The native runner stays unchanged because its protocol supplies the control-plane contract. > - The benefit is that new and existing legacy agents can always operate through Paperclip. ## Linked Issues or Issue Description Refs #7029 Refs #12138 Refs #12147 **What happened?** A skill-capable legacy local agent could start without `paperclipai/paperclip/paperclip`. This happened when the agent had no stored skill preference. An explicit empty preference also removed the skill. The agent then reported that the Paperclip skill was not available. **Expected behavior** Every skill-capable legacy local adapter must mount the Paperclip operational skill when the runtime inventory contains it. Optional skills must remain configurable. The native runner must keep its current protocol-based behavior. **Steps to reproduce** 1. Create a non-CEO `codex_local` agent without `paperclipSkillSync` preferences. 2. Start a legacy heartbeat. 3. Inspect the managed `CODEX_HOME/skills` directory. 4. Observe that the Paperclip skill is absent before this change. **Paperclip version or commit** The problem reproduces on `master` before this pull request. PR #7029 introduced the configured-only selection behavior. **Deployment mode** Local development and self-hosted legacy local adapters. ## What Changed - Added a shared legacy skill resolver that always selects the canonical Paperclip operational skill when it is available. - Applied the resolver to direct adapter execution, ACPX execution, skill snapshots, and persistent skill sync. - Added Hermes skill materialization at sync and run boundaries. - Aligned Cursor, Gemini, and OpenCode execution-time injection with the configured child `HOME`. - Made Hermes stop execution when another installation blocks the required operational skill. - Kept optional skills controlled by `paperclipSkillSync.desiredSkills`. - Kept `paperclip_runner` on the configurable-only resolver. - Added regression coverage for missing preferences, empty preferences, each skill-capable legacy adapter, ACPX, Hermes, and native runner isolation. - Documented the legacy runtime invariant. ## Verification - `pnpm -r typecheck` passed on the pushed commit. - `pnpm build` passed on the pushed commit. - The adapter utility regression suites passed: 236 tests. - The changed server adapter suites passed: 48 tests across 12 files. - The OpenCode adapter suite passed: 8 tests. - The Hermes adapter suite passed: 7 tests. - `git diff --check` passed. - `pnpm test:run` is not clean on this macOS host. The command reported failures in unchanged workspace and filesystem suites. An isolated rerun of `company-skills.test.ts` and `company-skills-service.test.ts` reproduced 11 failures because macOS resolved `/var/...` paths as `/private/var/...`. The changed adapter suites pass independently. ## Risks - This change deliberately makes the operational skill non-removable for skill-capable legacy local adapters. - Existing agents receive the skill on their next list, sync, or run boundary. No database migration is required. - The resolver does not create a skill when the runtime inventory does not contain the canonical entry. - Hermes aborts a run if another installation occupies the required operational skill target. - Hermes removes only an undesired Paperclip-owned symlink that still points to the known Paperclip source. - The native runner does not receive the legacy default. > For core feature work, check [`ROADMAP.md`](ROADMAP.md) first and discuss it in `#dev` before opening the PR. Feature PRs that overlap with planned core work may need to be redirected — check the roadmap first. See `CONTRIBUTING.md`. ## Model Used OpenAI Codex based on GPT-5. The exact serving model ID and context window were not exposed. The agent used reasoning, tool use, and code execution. ## Checklist - [x] I have included a thinking path that traces from project context to this change - [x] I have specified the model used (with version and capability details) - [x] I have checked ROADMAP.md and confirmed this PR does not duplicate planned core work - [x] I have searched GitHub for duplicate or related PRs and linked them above - [x] I have either (a) linked existing issues with `Fixes: #` / `Closes #` / `Refs #` OR (b) described the issue in-PR following the relevant issue template - [x] I have not referenced internal/instance-local Paperclip issues or links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip` URLs) - [x] My branch name describes the change (e.g. `docs/...`, `fix/...`) and contains no internal Paperclip ticket id or instance-derived details - [x] I have run tests locally and they pass - [x] I have added or updated tests where applicable - [x] I have updated relevant documentation to reflect my changes - [x] I have considered and documented any risks above - [x] All Paperclip CI gates are green - [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups - [x] I will address all Greptile and reviewer comments before requesting merge --------- Co-authored-by: Paperclip <noreply@paperclip.ing> |
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821573ede8 |
refactor(adapter-utils): extract the shared workspace-restore teardown factory (#12196)
## Thinking Path > - Paperclip is the open source app people use to manage AI agents for work. > - Agent adapters run workspace restore steps when an ACP run ends. > - Claude, Codex, and Gemini each kept a near-identical teardown closure. > - Duplicate closures require the same defect fix in three files. > - This pull request adds one shared workspace-restore teardown factory and keeps each adapter's message strings. > - The benefit is one tested restore-failure path with the same output and outcome for all three adapters. ## Linked Issues or Issue Description **What existing behavior does this improve?** The Claude, Codex, and Gemini ACP adapters restore the workspace during teardown and report restore failures with an allowlisted message. **Subsystem affected** `packages/adapters/` and `packages/adapter-utils/`. **Current behavior** Each adapter keeps a near-identical closure. The closure logs a start line, restores the workspace, classifies errors, and logs a fixed failure line. **Proposed behavior** A shared `createWorkspaceRestoreTeardown` factory owns the common steps. Each adapter passes its staged runtime, log sink, start line, and failure prefix. **Reason and benefit** The shared factory removes duplicate error handling. One tested implementation now preserves the existing output and outcome for all three adapters. **Breaking changes** None. The refactor preserves the emitted lines and returned outcomes. **Additional context** This pull request contains no public issue reference because no related public issue was found. ## What Changed - Add `createWorkspaceRestoreTeardown` to `packages/adapter-utils`. - Move the shared restore, classify, and allowlisted log flow into the factory. - Update the Claude, Codex, and Gemini ACP adapters to call the factory. - Add a table-driven test for all three message pairs. - Keep one end-to-end restore-failure regression test per adapter. ## Verification - `pnpm --filter @paperclipai/adapter-claude-local typecheck` - `pnpm --filter @paperclipai/adapter-codex-local typecheck` - `pnpm --filter @paperclipai/adapter-gemini-local typecheck` - `npx vitest run packages/adapter-utils/src/workspace-restore-teardown.test.ts` - `npx vitest run packages/adapter-utils/src/workspace-restore-merge.test.ts` - `npx vitest run packages/adapters/claude-local/src/server/acp.test.ts` - `npx vitest run packages/adapters/codex-local/src/server/acp.test.ts` - `npx vitest run packages/adapters/gemini-local/src/server/acp.test.ts` - Continuous integration must pass before merge, except for the known pre-existing failures listed in the handoff. ## Risks Low risk. This change moves shared code without changing behavior. The adapter-specific message strings remain unchanged. ## Model Used OpenAI GPT-5, exact model ID `gpt-5`, tool use and code review assistance. The context window size was not provided by the runtime. ## Checklist - [x] I have included a thinking path that traces from project context to this change - [x] I have specified the model used (with version and capability details) - [x] I have checked ROADMAP.md and confirmed this PR does not duplicate planned core work - [x] I have searched GitHub for duplicate or related PRs and linked them above - [x] I have either (a) linked existing issues with `Fixes: #` / `Closes #` / `Refs #` OR (b) described the issue in-PR following the relevant issue template - [x] I have not referenced internal/instance-local Paperclip issues or links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip` URLs) - [x] My branch name describes the change (e.g. `docs/...`, `fix/...`) and contains no internal Paperclip ticket id or instance-derived details - [x] I have run tests locally and they pass - [x] I have added or updated tests where applicable - [x] I have updated relevant documentation to reflect my changes - [x] I have considered and documented any risks above - [x] All Paperclip CI gates are green - [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups - [x] I will address all Greptile and reviewer comments before requesting merge --------- Co-authored-by: Paperclip <noreply@paperclip.ing> |
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a5c2add7be |
fix(adapter-utils): repair referenced-source ignore resolution type break and symlink descendant check (#12201)
## Thinking Path
> - Paperclip is the open source app people use to manage AI agents for
work
> - Referenced projects are staged into run sandboxes, and a recent
change made each staging site resolve the project's Git-ignored paths
explicitly (`ignoreResolution` on `SandboxAdditionalSource`)
> - One test call site was left without the now-required property, so
`tsc` fails in adapter-utils and every Build/Typecheck CI job on master
is red (surfaced when the TypeScript 7 bump landed in the same window)
> - Separately, the new descendant check compares a logical caller path
against the physical toplevel git prints, so any symlinked path fails
ignore resolution spuriously — three of the suite's own tests fail on
macOS because temp dirs live under the `/var` → `/private/var` symlink
> - This pull request supplies the missing property at the test call
site and makes the descendant comparison symlink-safe via realpath on
both sides
> - The benefit is a green master again, plus referenced-project staging
that works from symlinked checkouts and temp directories
## Linked Issues or Issue Description
No public issue exists; the underlying problem follows the bug-report
template.
**What happened?**
`packages/adapter-utils` fails `tsc` on master:
`src/sandbox-managed-runtime.test.ts(2284,29): error TS2741: Property
'ignoreResolution' is missing in type '{ localPath: string; projectId:
string; }' but required in type 'SandboxAdditionalSource'.` Every
Build/Typecheck CI job is red. Independently,
`resolveReferencedSourceIgnore` returns `{ kind: "failed", reason:
"referenced project path is not a descendant of its own Git top level:
/var/... under /private/var/..." }` for any symlinked project path, and
three tests in the suite fail on macOS.
**Expected behavior**
Master typechecks. A referenced project whose path reaches git through a
symlink (macOS temp dirs, symlinked checkouts) resolves its ignore set
normally, and the descendant check still fails closed for genuinely
foreign paths.
**Steps to reproduce**
1. `pnpm --filter @paperclipai/adapter-utils exec tsc --noEmit` on
master — TS2741 at `sandbox-managed-runtime.test.ts:2284`.
2. On macOS: `pnpm vitest run
packages/adapter-utils/src/sandbox-managed-runtime.test.ts` — three
`resolveReferencedSourceIgnore` tests fail with the "not a descendant"
reason above.
**Paperclip version or commit**
master `29d12045f`.
## What Changed
- `sandbox-managed-runtime.test.ts:2284`: the one call site missing
`ignoreResolution` now passes `{ kind: "other" }`, matching every
sibling call site from the same change.
- `sandbox-managed-runtime.ts`: `resolveReferencedSourceIgnore` resolves
both the git toplevel and the caller's `localPath` through a new
`physicalPath` helper (realpath with a resolve fallback) before the
descendant comparison. Git prints physical toplevels, so both sides must
be physical; the fallback keeps the check failing closed when a path
vanishes mid-run.
## Verification
- `pnpm vitest run
packages/adapter-utils/src/sandbox-managed-runtime.test.ts` — 61/61 pass
on macOS (previously 58 passing, 3 failing, plus the typecheck break).
- `tsc --noEmit` in `packages/adapter-utils` is clean.
## Risks
- Low. The behavioral change is confined to path normalization before an
existing comparison; a realpath failure falls back to the prior string
comparison, so the fail-closed property is preserved.
## Model Used
Claude Fable 5 (`claude-fable-5`, Anthropic) via Claude Code — agentic
coding session with tool use (code search, editing, local test
execution).
## Checklist
- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have searched GitHub for duplicate or related PRs and linked
them above
- [x] I have either (a) linked existing issues with `Fixes: #` / `Closes
#` / `Refs #` OR (b) described the issue in-PR following the relevant
issue template
- [x] I have not referenced internal/instance-local Paperclip issues or
links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip`
URLs)
- [x] My branch name describes the change (e.g. `docs/...`, `fix/...`)
and contains no internal Paperclip ticket id or instance-derived details
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [ ] All Paperclip CI gates are green
- [ ] Greptile is 5/5 with no open P2s, recommendations, or follow-ups
- [x] I will address all Greptile and reviewer comments before
requesting merge
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29d12045f4 |
perf(gateway): remove the whole-body string round trip on the HTTP/2 send path (#12189)
## Thinking Path > - Paperclip is the open source app people use to manage AI agents for work. > - Sandbox agents send callback requests through a generated gateway. > - The HTTP/2 callback path converts each full request body to a UTF-8 string. > - The same path converts that string back to a buffer before it sends the request. > - This pull request sends the body buffer directly to the HTTP/2 forwarder. > - The benefit is less copying and unchanged queue payload behavior. ## Linked Issues or Issue Description **What existing behavior does this improve?** The sandbox callback gateway HTTP/2 send path copies the full request body through a UTF-8 string before it sends the body. **Subsystem affected** The affected subsystem is `packages/adapter-utils`, which contains sandbox gateway and HTTP/2 adapter utilities. **Current behavior** The gateway reads the body into a buffer, converts the complete body to a UTF-8 string, and converts that string back to a buffer for the HTTP/2 path. The queue path stores the string payload. **Proposed behavior** The gateway keeps a byte reader for the HTTP/2 path. A thin text wrapper keeps the queue path behavior. The HTTP/2 path sends the original body buffer. **Reason and benefit** The extra conversions add work and memory use without changing the HTTP/2 body bytes. Direct buffer forwarding removes that work and preserves the size limit and reject behavior. **Breaking changes** None. The queue payload remains a string. The body size limit, content type check, and reject point remain unchanged. **Additional context** This change has no public issue link. The repository roadmap search found no duplicate planned work. The implementation also adds tests for non-ASCII JSON, malformed UTF-8, size limits, and queue payload shape. ## What Changed - Add `readBodyBytes(req)` for byte-preserving body reads. - Keep `readBody(req)` as a string wrapper for the queue path. - Send the byte buffer directly on the HTTP/2 path. - Add tests for byte identity, malformed UTF-8, size limits, and queue payload shape. ## Verification - `pnpm --filter @paperclip/adapter-utils test src/sandbox-callback-bridge.test.ts` passed with 51 tests. - `pnpm --filter @paperclip/adapter-utils exec tsc --noEmit` passed. - The tests spawn the generated gateway and the real host HTTP/2 bridge. - The tests verify byte identity, malformed UTF-8, pre-forward size rejection, queue file protection, and string queue payloads. - Full repository CI must pass before merge. ## Risks Low risk. The HTTP/2 path changes its internal body conversion only. The queue path keeps the prior string payload. The size limit and reject point stay unchanged. ## Model Used OpenAI Codex, GPT-5, tool use and code review assistance. The exact runtime context window is managed by the Codex service. ## Checklist - [x] I have included a thinking path that traces from project context to this change - [x] I have specified the model used (with version and capability details) - [x] I have checked ROADMAP.md and confirmed this PR does not duplicate planned core work - [x] I have searched GitHub for duplicate or related PRs and linked them above - [x] I have either (a) linked existing issues with `Fixes: #` / `Closes: #` / `Refs: #` OR (b) described the issue in-PR following the relevant issue template - [x] I have not referenced internal/instance-local Paperclip issues or links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip` URLs) - [x] My branch name describes the change (e.g. `docs/...`, `fix/...`) and contains no internal Paperclip ticket id or instance-derived details - [x] I have run tests locally and they pass - [x] I have added or updated tests where applicable - [x] I have updated relevant documentation to reflect my changes - [x] I have considered and documented any risks above - [x] All Paperclip CI gates are green - [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups - [x] I will address all Greptile and reviewer comments before requesting merge Co-authored-by: Paperclip <noreply@paperclip.ing> |
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802f2af154 |
refactor(adapter-utils): delete the dead duplex body-chunk protocol code (#12186)
## Thinking Path > - Paperclip is the open source app people use to manage AI agents for work > - The adapter utilities package provides transport code for sandbox agents > - The retired `duplex_v1` broker no longer produces or consumes body-chunk frames > - Dead protocol code remains in the host codec, gateway copy, bridge options, and tests > - This pull request removes that dead code and keeps the READY handshake unchanged > - The benefit is a smaller transport surface with fewer unused paths to maintain ## Linked Issues or Issue Description **What existing behavior does this improve?** This change improves the adapter utilities code that supports sandbox duplex readiness and frame handling. **Subsystem affected** `packages/adapter-utils/` — sandbox transport codecs, execution targets, and callback bridge tests. **Current behavior** The repository keeps body-chunk frame types, validators, a body spool, decoder limits, and tests after the `duplex_v1` broker removal. No live producer or consumer uses this code. **Proposed behavior** Remove the unused body-chunk protocol code and retain the READY handshake, its strict checks, and its size limits. **Reason and benefit** The removal reduces dead code and keeps the host and embedded gateway paths easier to inspect. It adds no new behavior. **Breaking changes** The removed frame types now decode as `unknown_type`. The live readiness gate already ignores those frames. The READY handshake stays byte-for-byte compatible. **Additional context** This cleanup follows [PR #12171](https://github.com/paperclipai/paperclip/pull/12171), which removed the duplex broker. ## What Changed - Remove `duplex-body-spool.ts` and its test. - Remove unused body-chunk frame types, validators, decoder code, vectors, and limits. - Remove the unused `reassembledBody` option and decoder limit environment entry. - Remove the embedded gateway decoder copy and the unused frame type map. - Keep the READY handshake and its existing boundary tests unchanged in behavior. ## Verification - `pnpm -F @paperclip/adapter-utils typecheck` passes. - The duplex frame codec test passes with 30 tests. - The sandbox execution-target test passes with 136 tests. - The sandbox callback bridge test passes with 46 tests. - CI must confirm all required checks after it starts. ## Risks Low risk. The change removes code only. The READY handshake, HTTP/2 body path, and byte-ledger path remain unchanged. ## Model Used OpenAI Codex, GPT-5, tool use and code execution. ## Checklist - [x] I have included a thinking path that traces from project context to this change - [x] I have specified the model used (with version and capability details) - [x] I have checked ROADMAP.md and confirmed this PR does not duplicate planned core work - [x] I have searched GitHub for duplicate or related PRs and linked them above - [x] I have either (a) linked existing issues with `Fixes: #` / `Closes #` / `Refs #` OR (b) described the issue in-PR following the relevant issue template - [x] I have not referenced internal/instance-local Paperclip issues or links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip` URLs) - [x] My branch name describes the change (e.g. `docs/...`, `fix/...`) and contains no internal Paperclip ticket id or instance-derived details - [x] I have run tests locally and they pass - [x] I have added or updated tests where applicable - [x] I have updated relevant documentation to reflect my changes - [x] I have considered and documented any risks above - [x] All Paperclip CI gates are green - [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups - [x] I will address all Greptile and reviewer comments before requesting merge --------- Co-authored-by: Paperclip <noreply@paperclip.ing> |
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822e0aed93 |
fix(adapter-utils): move the workspace-restore merge lock to an instance-scoped root and surface restore failures on the run (#12187)
## Thinking Path > - Paperclip is the open source app people use to manage AI agents for work > - Agent adapters restore sandbox work into project workspaces after a run > - The restore lock used the target workspace parent, which can reject writes > - The teardown then hid restore errors, so a run could report success with lost work > - This pull request moves the lock into an instance-scoped root and reports safe restore failure codes > - The benefit is reliable restore coordination and visible failure evidence without changing run success semantics ## Linked Issues or Issue Description Refs: #10914 ## What Changed - Move the workspace-restore merge lock into a private, instance-scoped root. - Derive the lock key from the canonical target path with SHA-256. - Resolve the lock root from the caller environment and reject unsafe root types. - Classify restore failures with three allowlisted codes. - Add the failure code to run result JSON without exposing a host path or process identifier. - Keep restore failure fail-open for the run exit code and run status. ## Verification - Run `npx vitest run packages/adapter-utils/src/workspace-restore-merge.test.ts`. - Run `npx vitest run packages/adapter-utils/src/acpx-engine/run-fault-matrix.test.ts`. - Run the four Codex credential suites. - Confirm the branch includes the current `master` commit and no manual lockfile edit. - Confirm all pull request checks and the Greptile review reach a terminal green state. ## Risks - The lock path changes for workspace restore and removes the sibling-directory fallback. - A misconfigured or inaccessible instance home can still stop lock setup. - Restore remains fail-open, so callers must inspect the result evidence when a restore fails. ## Model Used OpenAI GPT-5. The model used tool calls and code execution to validate and route an author-provided change. The implementing engineer authored the code. ## Checklist - [x] I have included a thinking path that traces from project context to this change - [x] I have specified the model used (with version and capability details) - [x] I have checked ROADMAP.md and confirmed this PR does not duplicate planned core work - [x] I have searched GitHub for duplicate or related PRs and linked them above - [x] I have either (a) linked existing issues with `Fixes: #` / `Closes: #` / `Refs: #` OR (b) described the issue in-PR following the relevant issue template - [x] I have not referenced internal/instance-local Paperclip issues or links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip` URLs) - [x] My branch name describes the change (e.g. `docs/...`, `fix/...`) and contains no internal Paperclip ticket id or instance-derived details - [x] I have run tests locally and they pass - [x] I have added or updated tests where applicable - [x] I have updated relevant documentation to reflect my changes - [x] I have considered and documented any risks above - [x] All Paperclip CI gates are green - [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups - [x] I will address all Greptile and reviewer comments before requesting merge --------- Co-authored-by: Paperclip <noreply@paperclip.ing> |
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d866ff374e |
fix(adapter-utils): report real transferred bytes for project sync, git-history export, and workspace restore (#12180)
## Thinking Path > - Paperclip is the open source app people use to manage AI agents for work > - Agent adapters move files between the host and sandbox during a run > - The sync transport reports transferred bytes, but some progress lines discard this value > - Discarded byte totals make large transfers display as `0.0 MB` > - This pull request passes the transport total to the affected progress lines > - The benefit is accurate transfer progress without changing file movement or confinement checks ## Linked Issues or Issue Description **What happened?** Three file-sync progress lines displayed `0.0 MB` when the transport moved data. The affected paths cover referenced-project staging, native git-history export, and native workspace restore. **Expected behavior** Each progress line should display the bytes that the sync transport transfers. A provider that reports zero bytes should preserve the known host-side value for inbound workspace sync. **Steps to reproduce** 1. Run a sandbox task that stages a referenced project. 2. Run a task that uses native git-history export or native workspace restore. 3. Inspect the file-sync progress lines during each transfer. **Paperclip version or commit** Commit `8062612baa20036a1defce8bbd683c038ba187d5`. **Deployment mode** Built from source with the adapter-utils Vitest suite. ## What Changed - Add a helper that sums valid `bytesTransferred` values from a `SandboxSyncResult`. - Use the transport total for referenced-project staging, native git-history export, and native workspace restore. - Preserve the caller count when referenced-project staging reports zero bytes. - Add tests for non-zero progress and the zero-byte fallback. ## Verification - Run `npx vitest run packages/adapter-utils/src/sandbox-managed-runtime.test.ts` from the repository root. - Run the TypeScript check for `packages/adapter-utils`. - Confirm that the new tests cover referenced-project staging, native workspace restore, native git-history export, and the zero-byte fallback. ## Risks This change affects progress reporting only. It does not change transferred files, transfer order, provider behavior, or confinement checks. ## Model Used OpenAI Codex, GPT-5, with tool use and code execution. The model reviewed and routed the author-provided change. The implementing engineer authored the code. ## Checklist - [x] I have included a thinking path that traces from project context to this change - [x] I have specified the model used (with version and capability details) - [x] I have checked ROADMAP.md and confirmed this PR does not duplicate planned core work - [x] I have searched GitHub for duplicate or related PRs and linked them above - [x] I have either (a) linked existing issues with `Fixes: #` / `Closes: #` / `Refs: #` OR (b) described the issue in-PR following the relevant issue template - [x] I have not referenced internal/instance-local Paperclip issues or links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip` URLs) - [x] My branch name describes the change (e.g. `docs/...`, `fix/...`) and contains no internal Paperclip ticket id or instance-derived details - [x] I have run tests locally and they pass - [x] I have added or updated tests where applicable - [x] I have updated relevant documentation to reflect my changes - [x] I have considered and documented any risks above - [x] All Paperclip CI gates are green - [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups - [x] I have addressed all Greptile and reviewer comments before requesting merge Co-authored-by: Paperclip <noreply@paperclip.ing> |
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6880213de5 |
fix(adapter-utils): honor .gitignore for referenced-project staging (#12184)
## Thinking Path > - Paperclip is the open source app people use to manage AI agents for work. > - Sandbox adapters stage project files before an agent starts. > - Referenced projects ignored Git-ignored paths and copied large local directories. > - This behavior increased staging time and disk use, and it differed from anchor workspaces. > - This pull request resolves Git-ignored paths once and shares that result across all referenced-project consumers. > - The benefit is smaller, faster, and consistent project staging. ## Linked Issues or Issue Description No public GitHub issue exists for this bug. **What happened?** Referenced-project staging copied Git-ignored paths, except for a fixed list of heavy directory names. A large repository therefore used much more time and disk space than the same repository in an anchor workspace. **Expected behavior** Referenced-project staging should exclude the same Git-ignored paths that the workspace staging path excludes. **Steps to reproduce** 1. Create a referenced project with a large Git-ignored directory. 2. Start a sandbox or SSH run that stages the referenced project. 3. Observe that the ignored directory enters the staged content. **Paperclip version or commit** Commit `9964b034bbff24e700c8eccf5a8b1fc3daa44bf2`. **Deployment mode** Built from source. ## What Changed - Resolve each referenced project's Git-ignored paths once before staging. - Carry the resolved paths as a required field on `SandboxAdditionalSource`. - Reuse the resolved paths in sandbox staging, SSH staging, and content-signature code. - Harden the read-only Git helper with a bounded process, a reduced environment, and disabled system and global configuration. - Fail closed on Git errors, timeouts, and invalid path relations. - Escape tar glob metacharacters in ignore-derived exclude entries. - Add and update unit tests for the resolver and its three consumers. ## Verification - `pnpm vitest run --config packages/adapter-utils/vitest.config.ts` passes 266 tests locally. - `pnpm exec tsc --noEmit -p packages/adapter-utils/tsconfig.json` passes locally. - CI must pass on this pull request. - Greptile must report 5/5 with no unresolved comments before merge. ## Risks - A Git error or timeout now prevents staging for the affected referenced project. - The resolver uses a bounded read-only Git process and fails closed by design. - The change stays inside `packages/adapter-utils` and does not change the database schema. ## Model Used Claude Sonnet 5 (Anthropic) assisted the implementation with code execution and tool use. The exact context window and reasoning mode are not recorded. ## Checklist - [x] I have included a thinking path that traces from project context to this change - [x] I have specified the model used (with version and capability details) - [x] I have checked ROADMAP.md and confirmed this PR does not duplicate planned core work - [x] I have searched GitHub for duplicate or related PRs and linked them above - [x] I have either (a) linked existing issues with `Fixes: #` / `Closes: #` / `Refs: #` OR (b) described the issue in-PR following the relevant issue template - [x] I have not referenced internal/instance-local Paperclip issues or links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip` URLs) - [x] My branch name describes the change (e.g. `docs/...`, `fix/...`) and contains no internal Paperclip ticket id or instance-derived details - [x] I have run tests locally and they pass - [x] I have added or updated tests where applicable - [x] I have updated relevant documentation to reflect my changes - [x] I have considered and documented any risks above - [x] All Paperclip CI gates are green - [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups - [x] I will address all Greptile and reviewer comments before requesting merge --------- Co-authored-by: Paperclip <noreply@paperclip.ing> |
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243430f76e |
feat: agents see the company skill library at runtime (#12147)
## Thinking Path
> - Paperclip is the open source app people use to manage AI agents for
work
> - An agent's runtime mounts only its own enabled skills; nothing tells
the model what else the company skill library holds
> - From inside a sandbox, "installed but not enabled for me" and "does
not exist" look identical, so agents tell users freshly installed skills
are not installed
> - This pull request renders the library as a deterministic markdown
section appended to claude-local agent instructions, and adds a
paperclipListSkills MCP tool
> - The benefit is that agents report the true state ("installed, not
enabled for me — ask an operator to enable it") instead of a false
negative
## Linked Issues or Issue Description
**What existing behavior does this improve?**
How agents reason about the company skill library at runtime.
**Subsystem affected**
`packages/adapter-utils` (new pure builder),
`packages/adapters/claude-local` (instructions append),
`packages/mcp-server` (new tool).
**Current behavior**
The runtime hands adapters the full library list, but only the agent's
enabled skills are mounted, and no prompt content or MCP tool describes
the rest. Agents inspect their sandbox, find nothing, and report
installed skills as not installed.
**Proposed behavior**
A "Company skill library" markdown section lists every skill as
`enabled`, `installed, not enabled for you`, or `enabled but
unavailable: <cause>`, with instructions to report the not-enabled state
accurately and ask an operator to enable it. claude-local appends it to
the agent instructions text. A `paperclipListSkills` MCP tool exposes
the same list on demand.
**Breaking changes**
None. Other adapters are untouched (they can adopt the builder later);
the manifest is deterministic, so the claude-local prompt-bundle cache
only busts when the library actually changes.
## What Changed
- New `packages/adapter-utils/src/skill-library-manifest.ts` with
`buildSkillLibraryManifestMarkdown` (pure, key-sorted, deterministic;
renders the missing-cause detail from #12146).
- `packages/adapters/claude-local/src/server/execute.ts` appends the
manifest to `combinedInstructionsContents` (creating it when no
instructions file is configured).
- `packages/mcp-server/src/tools.ts` adds `paperclipListSkills` hitting
`GET /companies/:companyId/skills`.
## Verification
- `npx vitest run
packages/adapter-utils/src/skill-library-manifest.test.ts` (from repo
root) — 3 tests: byte-identical output for shuffled input, state
rendering incl. the unavailable cause, change detection.
- `cd packages/mcp-server && npx vitest run` — new tool routing test
passes (13 passed; 1 pre-existing failure on my machine reproduces
unchanged at the branch base).
- `cd packages/adapters/claude-local && npx vitest run` — 244 passed, 1
skipped.
- `pnpm run typecheck` clean in adapter-utils, mcp-server, claude-local.
## Risks
- Prompt growth is one line per installed skill plus a five-line header
— bounded and only present when the library is non-empty. Stacked on
#12146 so the manifest's "enabled but unavailable" state reflects real
materialization failures.
## Model Used
- Claude Fable 5 (`claude-fable-5`, Anthropic) with extended thinking
and tool use, via Claude Code.
## Checklist
- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have searched GitHub for duplicate or related PRs and linked
them above
- [x] I have either (a) linked existing issues with `Fixes: #` / `Closes
#` / `Refs #` OR (b) described the issue in-PR following the relevant
issue template
- [x] I have not referenced internal/instance-local Paperclip issues or
links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip`
URLs)
- [x] My branch name describes the change (e.g. `docs/...`, `fix/...`)
and contains no internal Paperclip ticket id or instance-derived details
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [ ] All Paperclip CI gates are green
- [ ] Greptile is 5/5 with no open P2s, recommendations, or follow-ups
- [x] I will address all Greptile and reviewer comments before
requesting merge
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79b464bf9d |
fix(server): surface skill materialization failures instead of dropping the skill (#12146)
## Thinking Path
> - Paperclip is the open source app people use to manage AI agents for
work
> - Runtime skill listing materializes each company skill's files before
handing them to the agent's adapter
> - A materialization failure was swallowed with catch-to-null, and the
skill silently vanished from the runtime while the library still showed
it installed
> - Operators saw "installed", agents saw nothing, and nobody saw the
cause; on claude-local a missing desired skill could even crash the
prompt-bundle hasher
> - This pull request turns both failure paths into structured "missing"
entries with the real error and makes every adapter skip unmountable
entries explicitly
> - The benefit is that a broken skill shows up as broken, with its
cause, instead of not existing
## Linked Issues or Issue Description
**What happened?**
A company skill whose runtime files fail to materialize (deleted source,
missing stored SKILL.md copy, failed version snapshot) disappears from
`listRuntimeSkillEntries` with no trace. Agent skill snapshots report a
generic "not available" with no cause. On claude-local, a desired skill
whose source path does not exist reaches the prompt-bundle hasher, whose
`fs.lstat` throws and can fail the whole run.
**Expected behavior**
The skill appears with `sourceStatus: "missing"` and a `missingDetail`
carrying the underlying error, snapshots and the UI show it as broken,
and adapters skip it at mount time with a logged warning instead of
crashing or dangling-symlinking.
**Steps to reproduce**
Install a local-path skill referenced by an agent, delete its source
directory contents so the stored SKILL.md copy cannot be recovered, and
start a run: before this change the skill vanishes from the runtime set
silently; on claude-local a pinned-but-unmaterializable version can fail
bundle preparation.
## What Changed
- `server/src/services/company-skills.ts` `resolveRuntimeSkillSource`:
both `.catch(() => null)` sites (version snapshot, runtime
materialization) now return the structured `{status: "missing", source,
detail}` shape the deliberate missing branch already used, with the
underlying error message in `detail`.
- `packages/adapter-utils/src/server-utils.ts`:
`isPaperclipSkillSourceMissing` is exported with a doc comment.
- `packages/adapters/claude-local/src/server/execute.ts`: missing
desired skills are filtered out of the prompt bundle and each one logs a
`[paperclip] Warning` with its detail to the run output.
- `cursor-local`, `gemini-local`, `kimi-local`, `opencode-local`,
`pi-local` `execute.ts`: mount loops (and the cursor/gemini injection
calls) skip missing entries instead of symlinking a nonexistent path.
## Verification
- `cd server && npx vitest run
src/__tests__/company-skills-service.test.ts` — new test pins the
missing-with-cause entry for a failed materialization. Nine pre-existing
project-workspace tests in this file fail on my machine at clean
`master` too (environment-specific); their count is unchanged by this
PR.
- `cd server && npx vitest run
src/__tests__/heartbeat-runtime-skills.test.ts
src/__tests__/claude-local-skill-sync.test.ts
src/__tests__/cursor-local-skill-sync.test.ts
src/__tests__/cursor-local-skill-injection.test.ts
src/__tests__/gemini-local-skill-sync.test.ts` — 12 tests pass.
- `cd packages/adapters/claude-local && npx vitest run` — 244 passed, 1
skipped.
- `pnpm run typecheck` clean in server, adapter-utils, and all six
touched adapters.
## Risks
- Runtime skill entry lists grow by the previously dropped entries (now
flagged missing). All shipped consumers either intersect with desired
sets, already handle `sourceStatus: "missing"`, or now skip missing
entries at mount time. The snapshot layer already understood the missing
shape via the `materializeMissing: false` path, so downstream contracts
are unchanged.
## Model Used
- Claude Fable 5 (`claude-fable-5`, Anthropic) with extended thinking
and tool use, via Claude Code.
## Checklist
- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have searched GitHub for duplicate or related PRs and linked
them above
- [x] I have either (a) linked existing issues with `Fixes: #` / `Closes
#` / `Refs #` OR (b) described the issue in-PR following the relevant
issue template
- [x] I have not referenced internal/instance-local Paperclip issues or
links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip`
URLs)
- [x] My branch name describes the change (e.g. `docs/...`, `fix/...`)
and contains no internal Paperclip ticket id or instance-derived details
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [ ] All Paperclip CI gates are green
- [ ] Greptile is 5/5 with no open P2s, recommendations, or follow-ups
- [x] I will address all Greptile and reviewer comments before
requesting merge
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2862e18484 |
refactor(adapter-utils): remove the retired duplex_v1 sandbox bridge transport (#12171)
## Thinking Path > - Paperclip is the open source app people use to manage AI agents for work > - The adapter utilities provide sandbox transport paths for agent execution > - The retired `duplex_v1` path remains in host, gateway, and test code after `http2_v1` replaced it > - Retired transport code adds maintenance cost and leaves an unsafe fallback for unknown gateway modes > - This pull request removes the retired path, moves shared `http2_v1` contracts to a leaf module, and closes mode dispatch to a fixed allowlist > - The benefit is a smaller transport surface and explicit failure for unsupported modes ## Linked Issues or Issue Description Refs #12120 The `http2_v1` transport replaced `duplex_v1`, but the retired broker, gateway, constants, and tests remain in the adapter utilities. An unknown bridge mode can also fall through to the queue gateway when a queue directory exists. This change removes the retired code and rejects unsupported modes before gateway selection. ## What Changed - Delete the host `duplex_v1` broker and its transport-only tests. - Delete the in-sandbox duplex gateway and retired mode constants. - Move shared `http2_v1` symbols into `bridge-transport-contract.ts`. - Update the remaining importers and repair their focused tests. - Validate bridge modes against `http2_v1` and `queue_v1` before queue lookup. - Keep `queue_v1`, `duplex-frame-codec.ts`, and duplex telemetry dimensions unchanged. ## Verification - [x] `npx tsc --noEmit -p packages/adapter-utils` passes. - [x] `npx vitest run packages/adapter-utils/src` passes: 48 files and 968 tests pass, with 4 pre-existing platform skips. - [x] Full CI is green on this pull request. - [x] Greptile review is complete and every finding is resolved. ## Risks The change removes an internal transport that no host path selects. The main risk is an overlooked import or test dependency. Targeted typecheck and tests cover the adapter utility package. Full CI must confirm workspace-wide compatibility. ## Model Used Anthropic Claude Sonnet 5 assisted with the implementation, as recorded in the commit. The commit does not record a context-window size or reasoning mode. ## Checklist - [x] I have included a thinking path that traces from project context to this change - [x] I have specified the model used (with version and capability details) - [x] I have checked ROADMAP.md and confirmed this PR does not duplicate planned core work - [x] I have searched GitHub for duplicate or related PRs and linked them above - [x] I have either (a) linked existing issues with `Fixes: #` / `Closes #` / `Refs #` OR (b) described the issue in-PR following the relevant issue template - [x] I have not referenced internal/instance-local Paperclip issues or links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip` URLs) - [x] My branch name describes the change (e.g. `docs/...`, `fix/...`) and contains no internal Paperclip ticket id or instance-derived details - [x] I have run tests locally and they pass - [x] I have added or updated tests where applicable - [x] I have updated relevant documentation to reflect my changes - [x] I have considered and documented any risks above - [x] All Paperclip CI gates are green - [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups - [x] I will address all Greptile and reviewer comments before requesting merge Co-authored-by: Paperclip <noreply@paperclip.ing> |
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02a984068c |
refactor(adapter-utils): clean up the HTTP/2 bridge request-body bounds (#12166)
## Thinking Path > - Paperclip is the open source app people use to manage AI agents for work > - Agent adapters use the HTTP/2 bridge to carry requests and responses > - The bridge has an idle bound and a total-lifetime ceiling for request bodies > - The old renewable lifetime bound re-armed with each DATA chunk and could not act before the idle bound > - The code also repeated the same bounds and rationale in several places > - This pull request removes the unreachable renewable bound, keeps the one-shot ceiling, and simplifies the shared bounds object > - The benefit is clearer protection logic with the same default request-body behavior ## Linked Issues or Issue Description **What existing behavior does this improve?** The HTTP/2 bridge request-body reader uses several repeated bound parameters and comments. One renewable lifetime bound cannot act before the idle bound under the shipped defaults. **Subsystem affected** `packages/adapter-utils/` — HTTP/2 bridge adapter utilities. **Current behavior** The idle bound and renewable lifetime bound both re-arm after each DATA chunk. The renewable bound therefore does not act on its own. The total-lifetime ceiling also shares timer setup with the renewable bound. **Proposed behavior** Remove the renewable lifetime bound. Keep the total-lifetime ceiling as an independent one-shot timer. Pass one bounds object to the bridge call sites and keep tests for the idle bound and total-lifetime ceiling. **Reason and benefit** The change removes unreachable logic and repeated rationale. It keeps the independent total-lifetime protection and makes the bound behavior easier to review. **Breaking changes** The change removes two public constant and option names that repository-wide search found unused outside this implementation. The shipped default behavior does not change. ## What Changed - Remove the renewable request-body lifetime bound and its public names. - Keep the total-lifetime ceiling as a one-shot timer that starts when the body read starts. - Replace repeated bound parameters with one `Http2BridgeBodyBounds` object. - De-duplicate bound rationale comments. - Add shared test helpers and update tests for the idle bound and total-lifetime ceiling. ## Verification - Run `npx tsc --noEmit -p packages/adapter-utils`. - Run `npx vitest run packages/adapter-utils/src/http2-bridge-server.test.ts`. - Wait for the pull request CI checks. - Request the Greptile review and confirm a 5/5 verdict with no open findings. ## Risks The main risk is an incorrect timer lifetime after the renewable timer removal. The one-shot ceiling remains independent, and the updated tests cover its expiry and cleanup paths. The change does not alter the shipped default bounds. ## Model Used OpenAI Codex based on GPT-5. Exact runtime model version is GPT-5. The work used tool calls and code execution for repository inspection and GitHub operations. ## Checklist - [x] I have included a thinking path that traces from project context to this change - [x] I have specified the model used (with version and capability details) - [x] I have checked ROADMAP.md and confirmed this PR does not duplicate planned core work - [x] I have searched GitHub for duplicate or related PRs and linked them above - [x] I have either (a) linked existing issues with `Fixes: #` / `Closes #` / `Refs #` OR (b) described the issue in-PR following the relevant issue template - [x] I have not referenced internal/instance-local Paperclip issues or links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip` URLs) - [x] My branch name describes the change (e.g. `docs/...`, `fix/...`) and contains no internal Paperclip ticket id or instance-derived details - [x] I have run tests locally and they pass - [x] I have added or updated tests where applicable - [x] I have updated relevant documentation to reflect my changes - [x] I have considered and documented any risks above - [x] All Paperclip CI gates are green - [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups - [x] I will address all Greptile and reviewer comments before requesting merge Co-authored-by: Paperclip <noreply@paperclip.ing> |
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445547c989 |
feat(duplex): run the Daytona sandbox callback bridge over Node HTTP/2 (#12120)
## Thinking Path > - Paperclip is the open source app people use to manage AI agents for work > - Sandbox providers carry agent work through controlled execution channels > - The Daytona callback bridge uses a bespoke line-framed protocol over its duplex channel > - The bespoke protocol adds framing work and does not use the Node transport that already supports multiplexed streams > - This pull request carries raw bytes across the channel, adds a Node HTTP/2 bridge, and selects it for Daytona > - The benefit is one authenticated, multiplexed callback session with queue_v1 as the bounded fallback ## Linked Issues or Issue Description **Subsystem affected** The packages/plugins Daytona provider and the shared duplex execution path. **Problem or motivation** The Daytona callback bridge uses a bespoke line-framed protocol over the provider duplex channel. This adds protocol work and limits stream handling. **Proposed solution** Carry raw bytes through the cross-layer channel. Add an authenticated Node HTTP/2 host server and sandbox client gateway. Select http2_v1 for Daytona and retain queue_v1 as the fallback. **Alternatives considered** Keep the current duplex_v1 protocol. This keeps the bespoke framing path and does not provide one HTTP/2 session for callback streams. **Roadmap alignment** ROADMAP.md lists Daytona under cloud and sandbox agents. This change improves the shipped Daytona provider path. **Additional context** The branch adds no dependency. Node 24 provides the http2 module. The host token check and canonical path parser remain the single dispatch path. ## What Changed - Carry raw Uint8Array chunks through the adapter, plugin, worker, runtime, and Daytona layers. - Encode bytes as base64 only across the JSON-RPC hop, because JSON has no binary type. - Add the bounded host HTTP/2 server and the in-sandbox HTTP/2 client gateway. - Authenticate every stream with the per-run bridge token before route work. - Parse the path once and reuse the canonical result for route and forwarding work. - Select http2_v1 for Daytona and fall back once to queue_v1 when the client preface is absent. - Add transport, session, stream, and fallback telemetry. - Mark HTTP/2 as the preferred transport and queue_v1 as the soft-deprecated fallback. ## Verification - `npx vitest run packages/adapter-utils/src` — 990 passed and 4 skipped. - `npx vitest run server/src/__tests__/plugin-worker-manager-duplex.test.ts` — 32 passed. - `npx vitest run --config packages/plugins/sandbox-providers/daytona/vitest.config.ts` — 220 passed and 6 skipped. - `npx tsc --noEmit` in `packages/adapter-utils`, `packages/shared`, `packages/plugins/sdk`, and `server` — clean. - No `package.json` or `pnpm-lock.yaml` file changed. - The live Daytona test skips when `DAYTONA_API_KEY` is absent. - The root `npx tsc --noEmit` command has a pre-existing missing `packages/adapters/droid-local` reference on this branch and on `master`. ## Risks - The transport change affects several duplex layers and could expose byte-boundary errors. - A missing HTTP/2 client preface falls back once to queue_v1 and records `preface_missing`. - The host token check and canonical path parser must remain on the shared dispatch path. - The live Daytona test needs `DAYTONA_API_KEY` and does not run in this agent sandbox. ## Model Used OpenAI GPT-5, tool-enabled coding agent with repository inspection, GitHub CLI, and shell execution. ## Checklist - [x] I have included a thinking path that traces from project context to this change - [x] I have specified the model used (with version and capability details) - [x] I have checked ROADMAP.md and confirmed this PR does not duplicate planned core work - [x] I have searched GitHub for duplicate or related PRs and linked them above - [x] I have either (a) linked existing issues with `Fixes: #` / `Closes #` / `Refs #` OR (b) described the issue in-PR following the relevant issue template - [x] I have not referenced internal/instance-local Paperclip issues or links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip` URLs) - [x] My branch name describes the change (e.g. `docs/...`, `fix/...`) and contains no internal Paperclip ticket id or instance-derived details - [x] I have run tests locally and they pass - [x] I have added or updated tests where applicable - [x] I have updated relevant documentation to reflect my changes - [x] I have considered and documented any risks above - [x] All Paperclip CI gates are green - [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups - [x] I will address all Greptile and reviewer comments before requesting merge --------- Co-authored-by: Paperclip <noreply@paperclip.ing> |
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b6854e61c7 |
refactor(adapter-utils): rename EffectiveSandboxCapabilities to EffectiveExecutionCapabilities (#12119)
## Thinking Path > - Paperclip is the open source app people use to manage AI agents for work > - The adapter utilities package defines shared types for agent execution targets > - The type name EffectiveSandboxCapabilities describes only one transport > - All execution target drivers return the same resolved capability snapshot > - This pull request gives the snapshot a general name and keeps the old type as a deprecated alias > - The benefit is clearer public vocabulary with source compatibility for current consumers ## Linked Issues or Issue Description **What existing behavior does this improve?** The exported capability snapshot type uses the name `EffectiveSandboxCapabilities`, although local, SSH, sandbox, and plugin drivers return it. **Subsystem affected** The change affects `packages/adapter-utils` and its server consumers. **Current behavior** The public type name points to the sandbox transport. The private parser also uses the sandbox-only name. **Proposed behavior** Use `EffectiveExecutionCapabilities` for the public type and `parseEffectiveExecutionCapabilities` for the private parser. Keep a deprecated alias for the old public type. **Reason and benefit** The new name matches the established execution-target vocabulary. The alias keeps existing type imports working during the migration. **Breaking changes** None. The runtime field, capability flags, parsed shape, and package versions do not change. **Additional context** GitHub search found no duplicate or related open issue or pull request. ## What Changed - Rename the exported interface to `EffectiveExecutionCapabilities`. - Keep `EffectiveSandboxCapabilities` as a deprecated type alias. - Rename the private parser and update its call site and references. - Add a type-level test for the deprecated alias. ## Verification - `npx tsc --noEmit -p packages/adapter-utils` - `npx vitest run packages/adapter-utils/src/execution-target-sandbox.test.ts` - `npx vitest run server/src/__tests__/environment-execution-target-capabilities.test.ts server/src/__tests__/environment-execution-target-duplex.test.ts` - The local checks passed with 133 adapter-utils tests and 31 server tests. - Reviewers can confirm that the runtime field and capability flags stay unchanged. ## Risks Low risk. The alias protects existing type imports. The change does not alter runtime behavior or serialized data. ## Model Used OpenAI Codex, GPT-5, tool use and code execution. The runtime does not expose the context window size. ## Checklist - [x] I have included a thinking path that traces from project context to this change - [x] I have specified the model used (with version and capability details) - [x] I have checked ROADMAP.md and confirmed this PR does not duplicate planned core work - [x] I have searched GitHub for duplicate or related PRs and linked them above - [x] I have either (a) linked existing issues with `Fixes: #` / `Closes #` / `Refs #` OR (b) described the issue in-PR following the relevant issue template - [x] I have not referenced internal/instance-local Paperclip issues or links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip` URLs) - [x] My branch name describes the change (e.g. `docs/...`, `fix/...`) and contains no internal Paperclip ticket id or instance-derived details - [x] I have run tests locally and they pass - [x] I have added or updated tests where applicable - [x] I have updated relevant documentation to reflect my changes - [x] I have considered and documented any risks above - [x] All Paperclip CI gates are green - [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups - [x] I will address all Greptile and reviewer comments before requesting merge --------- Co-authored-by: Paperclip <noreply@paperclip.ing> |