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Include renames

Author	SHA1	Message	Date
3 people	a8a038e659	fix(server): schedule native pending effect recovery (#17690) ... ## Thinking Path > - Paperclip is the open source app people use to manage AI agents for work. > - Native status decisions store effect targets and a delivery ledger. > - Historical pending or failed effects still need recovery. > - The periodic finalizer queries that ledger even when work is complete. > - This pull request gives pending effects their own commit-driven worker and saved deadlines. > - Completed history becomes quiet while incomplete effects remain recoverable. ## Linked Issues or Issue Description Refs #17687 (merged). This is slice 47 of the sleep migration stack, now based on master. **What problem does this solve?** Periodic native finalization repeatedly checks effect delivery. A tenant with completed history should not perform recurring SQL for this duty. Historical unresolved effects must still recover without duplicating their targets. **Proposed solution** Reconstruct current pending effects at startup. Wake from committed coordinator changes. Use the saved retry and ownership deadlines. Keep the existing dispatcher as the only recovery mutation owner. **Alternatives considered** A slower unconditional scan still creates idle traffic. A new queue table duplicates existing durable state. Replaying materialization can duplicate effects. This change uses the existing ledger, transaction signals, and shared scheduler. ## What Changed - Add a scoped worker with 100-row discovery pages and fair 25-entry dispatch batches. Delivered, superseded, and terminal-failure history has no recurring scan. - Preserve exact company/issue/run/decision binding and validate materialized targets before settling effects. Recheck phase, saved result, retry, and lease under the coordinator lock. Missing targets retain recovery. - Notify from decision replay, accepted-result recovery, coordinator claim/retry/release, attention replay, and execution-control recovery. Only two DB-only producer writes need a new transaction wrapper. Nested transactions use the existing outer-commit boundary. - Exclude pending-effect candidates from periodic finalization so it cannot skip ahead of their owner. Keep explicit and startup recovery behavior compatible. Respect maintenance disablement, drain, standby, and shutdown. - Add concurrent, idempotent migration 0411 with partial indexes for pending effects and their current coordinator binding. Retain the five newest schema snapshots. - Document producers, query evidence, failure history, and scope in `doc/plans/2026-10-25-native-pending-effects-sleep-audit.md`. ## Verification - Source `ba38ee465df02b6026286b5d5e15ae49fe07a367` passes all 2284 distinct cases across 25 complete files, without skips. The main selection passes 2225 in 203.94 seconds; safe-replacement passes 59 in 26.03 seconds. Coverage includes all 968 native-session cases, the 94-case status-authority/pending-effect corpus, actual decision/lease producers, Stop, queue, interaction, reconstruction and Slack consumers. The audit gives per-file counts. - The complete 94-case corpus passes again on the same database in 16.03 seconds. Retained PSC/OUT rows and an unrelated sentinel remain unchanged. The repeat is not counted again as distinct coverage. - Twenty-one separate fresh PostgreSQL 17 databases migrate through 0411 before setup. Four embedded-only fixture imports temporarily use their own external database on this IPC-exhausted host and are restored byte for byte. Assertions and timing limits stay unchanged. This qualifies external-database behavior; it does not claim an unmodified embedded CI run. - Database build, server typecheck/build, module boundaries and exact-head migration order pass. Original runtime/schema edits and unrelated upstream blobs are preserved. Both original concurrent index statements, all prior executable history, journal entries and retained snapshot bytes are unchanged; five snapshots 0407 through 0411 remain. - Populated 0410-to0411 upgrade preserves all 409 prior migration receipts and 38 companies, appends one receipt and adds none on replay. Both indexes are valid and ready on fresh and upgraded databases. - Adopting the latest prepared prerequisite changes ancestry and parent audits only. All accepted core trees remain identical. The audit retains earlier failures and qualifications. Actual landed-parent ancestry is now reconciled; fresh published-head CI and exact-head Greptile 5/5 remain required. No deployed sleep, Cloud-wake or fleet-cost claim is made. - Current parent context: integration `5f7cd7bc589ad0169dfb5f33df611ead56510ca3` changes only the parent's GitHub observation bound and independent cleanup assertion. All production code, packages and 25 accepted test files remain unchanged. Both focused GitHub idle cases pass in 15.26 seconds and the complete six-case cleanup suite passes in 8.47 seconds on two fresh 0411 PostgreSQL fixtures. This does not claim the full parent workflow was rerun here. ## Risks - A missing producer can delay work until restart. The audit covers current supported writers. Independent SQL and other processes remain outside the local notification contract. - Recovery validates existing targets; it cannot recreate a missing target or silently mark it delivered. Such work retains an error and retry. - The indexes add write/storage cost and use the existing restart-safe concurrent migration runner. - Other finalization duties still poll until their separate migrations. This PR does not prove host/database suspension, extend Cloud alarms, or claim fleet savings. - The actual prerequisite squash is adopted through a normal merge. Its complete tree equals the reviewed parent, and the complete accepted child tree is preserved. Fresh published-head CI and review remain required. ## Model Used OpenAI Codex, based on GPT-6, with reasoning and code-execution tools. The exact serving model ID and context-window size are not exposed in this session. ## Checklist - [x] I have included a thinking path that traces from project context to this change - [x] I have specified the model used (with version and capability details) - [x] I have checked ROADMAP.md and confirmed this PR does not duplicate planned core work - [x] I have searched GitHub for duplicate or related PRs and linked them above - [x] I have either (a) linked existing issues with `Fixes: #` / `Closes #` / `Refs #` OR (b) described the issue in-PR following the relevant issue template - [x] I have not referenced internal/instance-local Paperclip issues or links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip` URLs) - [x] My branch name describes the change (e.g. `docs/...`, `fix/...`) and contains no internal Paperclip ticket id or instance-derived details - [x] I have run tests locally and they pass - [x] I have added or updated tests where applicable - [x] I have updated relevant documentation to reflect my changes - [x] I have considered and documented any risks above - [x] All Paperclip CI gates are green - [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups - [x] I will address all Greptile and reviewer comments before requesting merge --------- Co-authored-by: Paperclip <noreply@paperclip.ing> Co-authored-by: Codex <noreply@openai.com>	2026-10-29 00:28:00 -05:00
DottaandPaperclip	4e715eb7ea	fix(server): schedule historical unsafe export recovery (#17687) ... ## Thinking Path > - Paperclip is the open source app people use to manage AI agents for work. > - Native runs can retain accepted results after an unsafe workspace export fails. > - Historical recovery can retire an old notice or resume the accepted result without another provider turn. > - The periodic reaper repeatedly scans failures that cannot currently recover. > - Existing rows and committed changes can identify the actual recovery obligation. > - This pull request wakes recovery from those changes and retries only owed work. > - Dormant history becomes quiet while ownership and explicit operator decisions remain protected. ## Linked Issues or Issue Description **What happened?** The native finalization reaper repeatedly visits historical unsafe workspace-export failures. Cancelled tasks, newer runs, changed contracts, and explicit operator decisions can make those rows permanently ineligible. They still produce periodic database reads. **What did you expect?** Retire stale unsafe-export notices and recover eligible accepted results. Stop reading dormant history until a relevant committed change occurs. Keep a retry while a real obligation is blocked by ownership or a transient failure. **Steps to reproduce** Retain an unsafe-export terminal failure whose task is cancelled or superseded. Leave the instance idle after startup. The periodic reaper continues reading that history. Prerequisite #17680 is merged into master. Related: #14402 established safe export finalization; #14329 was an earlier historical recovery proposal. #17679 owns separate policy-review cleanup. This PR changes only historical unsafe-export scheduling and its producers. ## What Changed - Register a scoped worker through the existing coordinator and scheduler. Remove this duty from periodic reaping. Preserve the manual/startup recovery entry point. - Distinguish stale notices, eligible accepted results, dormant history, and concrete ownership contention. Reuse the existing mutation owner and lock order. Preserve explicit settlement vetoes and exact result/contract identity. - Signal relevant task, run, action, and deletion writes before they commit. Existing transaction boundaries handle nested commits and uncertain outcomes. Notifications contain only scope IDs. - Retain a retry only for owed work. Reconstruct work at startup, preserve drain/resume, and stop through the shared lifecycle. - Add concurrent, idempotent partial index migration 0410 for unsafe terminal failures. Keep the five newest generated schema snapshots. - Document producer coverage, query plans, supported writer boundaries, and test failures in the unsafe-export audit. ## Verification - Source `2a13dd08a6cc52f0adab09e3df9ce31e97b746b9` passes all 2188 cases across 24 complete files, without skips. The main selection passes 2129 cases in 192.58 seconds; safe-replacement passes 59 in 26.04 seconds. Coverage includes all 968 native-session cases, real export/action producers, explicit continuation, workspace reconstruction, interaction routing, Stop, queue and Slack consumers. The audit gives per-file counts. - Twenty separate fresh PostgreSQL 17 databases migrate through 0410 before setup. Four embedded-only fixture imports temporarily use their own external database on this IPC-exhausted host, then are restored byte for byte. Assertions and timing limits stay unchanged. This is qualified external-database acceptance, not an unmodified embedded CI run. - Database build, server typecheck/build, module boundaries and exact-head migration order pass. Normal integration preserves the complete original runtime/schema patch and unrelated upstream blobs. Original concurrent index SQL, all prior executable history, journal entries and retained snapshot bytes are unchanged; five snapshots 0406 through 0410 remain. Added comment removal preserves the full non-comment TypeScript token streams. - A populated 0409-to0410 upgrade preserves all 408 prior migration receipts and 38 companies. It appends exactly one receipt; replay adds none. The index is valid and ready on fresh and upgraded databases. - The owning audit retains earlier fixture failures, skipped checks and notice-retirement regression history. Older combined stack checks retain their original scope in their owning audits. Actual parent `73d24aa5acfcf17b3f676b4da7cd05eb70b60b99` is reconciled through a normal merge. Its tree equals the reviewed ancestor and the complete accepted child tree is unchanged. Fresh published-head CI and Greptile 5/5 remain required. No deployed sleep, fleet-cost or live provider qualification claim is made. - Inherited prefix correction: current integration `8f43c9f81fac23b50997e7f0e1d0d9cf383a8109` changes only two values in a previously unselected corpus fixture. All production code, the complete package tree and all 24 accepted test files remain byte-identical to the 2188-case source above. The additional complete 72-case corpus passes in 14.00 seconds and again on the same database in 13.08 seconds. Retained PSC/OUT and sentinel rows remain unchanged. The repeat is not double-counted. The parent audit retains the original collision and rejected cleanup attempt. - Latest parent context: integration `4d51231abe8b68c21ce896d0d2ac16865978c8ab` carries only the parent's one-argument GitHub observation correction and an independent master cleanup assertion. All production code, packages, 24 accepted suite files and the additional corpus are unchanged. The two focused native-presentation cases pass in 15.14 seconds and the complete cleanup-removal suite passes all six cases in 8.31 seconds on two fresh 0410 PostgreSQL fixtures. This does not claim the full parent workflow was rerun here. Current head `b28399babac72ba9db1c4a4ef882c5e87aded38c` has passing CI and Greptile 5/5 with no actionable findings. The first CI attempt lost runners: fourteen jobs explicitly received simultaneous shutdown signals, two reported lost runner communication, and two aggregate gates failed downstream. One failed-job retry on unchanged source passes. The underlying host shutdown cause remains unconfirmed; no code fix or extra retry is claimed. [CI run and attempts](https://github.com/paperclipai/paperclip/actions/runs/40819408528). No Ponytail verdict is present. ## Risks - A missing future producer can delay dormant-history discovery until restart. The audit names current producers. Independent SQL writers and other server processes remain outside the process-local signal contract. - Physical ownership and uncertain operations retain retries. Time alone does not authorize taking workspace ownership. No provider turn or unsafe archive retry is added. - The recovery owner remains authoritative if state changes after discovery. Terminal UI status does not authorize resource destruction or accepted-result replay. - The partial index adds matching-row write/storage cost. It builds concurrently through the existing restart-safe migration runner. - This proves the changed worker becomes quiet. It does not prove host suspension, external wake coverage, or fleet cost savings. Other sleep migrations remain. This slice still requires fresh current-head CI and reviews. ## Model Used OpenAI Codex, based on GPT-6, with reasoning and code-execution tools. The exact serving model ID and context-window size are not exposed in this session. ## Checklist - [x] I have included a thinking path that traces from project context to this change - [x] I have specified the model used (with version and capability details) - [x] I have checked ROADMAP.md and confirmed this PR does not duplicate planned core work - [x] I have searched GitHub for duplicate or related PRs and linked them above - [x] I have either (a) linked existing issues with `Fixes: #` / `Closes #` / `Refs #` OR (b) described the issue in-PR following the relevant issue template - [x] I have not referenced internal/instance-local Paperclip issues or links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip` URLs) - [x] My branch name describes the change (e.g. `docs/...`, `fix/...`) and contains no internal Paperclip ticket id or instance-derived details - [x] I have run tests locally and they pass - [x] I have added or updated tests where applicable - [x] I have updated relevant documentation to reflect my changes - [x] I have considered and documented any risks above - [x] All Paperclip CI gates are green - [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups - [x] I will address all Greptile and reviewer comments before requesting merge --------- Co-authored-by: Paperclip <noreply@paperclip.ing>	2026-10-29 00:13:22 -05:00
DottaandPaperclip	35fdc0c66b	fix: make task recovery durable and preserve current requests (#13075) ... Make task recovery durable and preserve the latest user request across native and legacy continuations. Keep routine recovery quiet and prevent replay when action outcomes are uncertain. Co-Authored-By: Paperclip <noreply@paperclip.ing>	2026-09-09 09:14:25 -05:00
Dotta	7b094724e6	fix(runner): recover native sessions across restarts (#12845) ... ## Thinking Path > - Paperclip is the open source app people use to manage AI agents for work. > - The Paperclip Runner keeps durable run and provider state outside one server process. > - A server restart can leave that runner alive or can interrupt it after a provider checkpoint. > - The old startup path used handoff intent and PID evidence, but it did not reconstruct native ownership. > - That gap could block the issue, create a replacement run, or start duplicate provider work. > - This pull request adds durable same-run recovery for coordinated and uncoordinated restarts. > - The benefit is exact recovery of the run, runner, session, provider, steering, and finalization state. ## Linked Issues or Issue Description Refs #9628. That pull request added earlier local-adapter hot-restart work. This change adds native PRP authority reconstruction and same-run provider resume. Refs #10935. That pull request handles missing hot-restart snapshots. This change also supports hard restarts with no snapshot. Refs #11624. That pull request prevents unsafe retry after an adopted legacy process exits. This change reconciles native terminal evidence before provider recovery. Refs #12070. That pull request improves process liveness checks. This change also binds recovery to a process-start fingerprint and fails closed on ambiguity. **What happened?** The server could record hot-restart intent, but startup did not rebuild native runner ownership. A live runner could not re-register its PRP authority. A dead runner could not resume the exact native and provider session on the same heartbeat run. Generic recovery could then block the issue or create replacement work. **Expected behavior** A live native runner must reconnect with the same PID and logical identities. A dead runner must resume the same durable session and heartbeat run with only a new operating-system PID. A proposed or terminal result must finalize once before any provider turn starts. Ambiguous process or session evidence must stay blocked without a signal or duplicate spawn. **Steps to reproduce** 1. Start a Paperclip Runner heartbeat and wait for an active provider turn. 2. Restart only the Paperclip server, with or without a hot-restart marker. 3. Observe that the old startup path does not reconstruct the native control-plane authority. 4. Kill both the server and runner after a provider checkpoint. 5. Observe that the old path cannot resume the exact native session on the original heartbeat run. **Paperclip version or commit** The defect was reproduced from commit `1991f31fd53e7f7794d5c2e4b93be384ade2b41d`. This branch is rebased onto the current `master`. **Deployment mode** Local development and self-hosted server deployments that use the local Paperclip Runner. ## What Changed - Added correlated hot-restart requests and version-compatible native handoff fields. - Added controller boot identity, process-start identity, controller generation, recovery state, request id, and bounded history to the native finalization ledger. - Added transactional recovery claims for live-runner reattach, dead-runner resume, and incomplete bootstrap. - Added fail-closed ownership takeover rules and process identity validation. - Added live runner adoption to the local runner transport without a duplicate spawn. - Added same-run provider checkpoint resume and legacy retry-row compatibility. - Reconciled proposed and terminal results before runner or provider recovery. - Bound the HTTP and PRP listener before startup recovery and delayed scheduling and generic reapers until classification completes. - Added restart-aware health diagnostics, run-log recovery transitions, durable runner diagnostics, and bounded shutdown finalizer draining. - Moved restart-survivable diagnostics into runner-owned, pre-redacted bounded writes; raw stdout and stderr are never persisted. - Added process-start fencing for controller, runner, and provider PIDs; startup classifies every candidate without an implicit cap. - Added crash-recoverable, contention-safe development restart-request coordination and failed-startup listener cleanup. - Added a credential-free real-process restart suite for eight restart, scale, and identity scenarios. - Documented native restart operation, persistence, diagnostics, and verification. ## Verification - The documented native restart commands passed. They ran eight real-process/database recovery scenarios and the live runner adoption transport test. - Native executor tests passed: 111 tests. - Heartbeat recovery tests passed: 124 tests. - Hot restart, health, and shutdown tests passed: 52 tests. - The broader affected server suite passed: 350 tests. - Focused native recovery and startup tests passed: 49 tests. - Runner transport and control-plane tests passed: 63 tests. - Runner-owned diagnostic tests passed for write-time bounding, credential redaction, private file modes, and raw stream non-persistence. - Development restart coordination tests passed: 11 tests. - Database migration checks and the partial-application/replay regression test passed. - Server, database, and Paperclip Runner typechecks passed. - `git diff --check` passed. - Full Paperclip PR CI passed, including build, canary, all five general server shards, all five serialized server shards, all three browser E2E shards, workspace suites, and release-registry verification. - Greptile completed at 5/5 with no outstanding findings, recommendations, follow-ups, or open review threads. ## Risks - Moderate risk. This changes startup ordering and ownership transfer for active native runs. - The migration adds nullable columns and does not rewrite existing rows. - Recovery fails closed when process or durable session identity is incomplete or contradictory. - The first implementation supports the local Paperclip Runner. Remote targets keep their existing behavior. - The real-process suite covers cleanup and asserts that no runner or provider process survives each test. > For core feature work, check [`ROADMAP.md`](ROADMAP.md) first and discuss it in `#dev` before opening the PR. Feature PRs that overlap with planned core work may need to be redirected — check the roadmap first. See `CONTRIBUTING.md`. ## Model Used - OpenAI Codex with GPT-5. The runtime did not expose a more specific model revision or context-window size. Repository editing, shell execution, database tests, and real-process test execution were enabled. ## Checklist - [x] I have included a thinking path that traces from project context to this change - [x] I have specified the model used (with version and capability details) - [x] I have checked ROADMAP.md and confirmed this PR does not duplicate planned core work - [x] I have searched GitHub for duplicate or related PRs and linked them above - [x] I have either (a) linked existing issues with `Fixes: #` / `Closes #` / `Refs #` OR (b) described the issue in-PR following the relevant issue template - [x] I have not referenced internal/instance-local Paperclip issues or links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip` URLs) - [x] My branch name describes the change (e.g. `docs/...`, `fix/...`) and contains no internal Paperclip ticket id or instance-derived details - [x] I have run tests locally and they pass - [x] I have added or updated tests where applicable - [x] I have updated relevant documentation to reflect my changes - [x] I have considered and documented any risks above - [x] All Paperclip CI gates are green - [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups - [x] I will address all Greptile and reviewer comments before requesting merge	2026-09-04 15:03:53 -05:00
DottaandPaperclip	4d2af732ae	feat(runner): add native persistence contracts (#12169) ... ## Thinking Path > - Paperclip is the open source app people use to manage AI agents for work. > - Agent runs need durable records so Paperclip can explain results and final status changes. > - The current heartbeat tables support direct adapters, but they do not model native runner evidence. > - The runner transport and server coordinator must share a strict finalization contract before they write production data. > - This pull request adds that contract and its additive database boundary. > - It does not select the Paperclip Runner or change any existing adapter execution path. > - The benefit is a reviewable persistence layer that preserves all current behavior and supports later guarded integration. ## Linked Issues or Issue Description Refs #11962 Refs #12129 ## What Changed - Add native run result, finalization, completion, assessment, status decision, and status effect tables. - Add inert native metadata to heartbeat runs and events. Keep `legacy` as the default runtime mode. - Bind each evidence relationship to one company, issue, run, contract, result, assessment, and decision with composite constraints. - Add a strict `paperclip.native_finalization.v1` shared type and validator. - Preserve database functions, triggers, and the unique indexes required by foreign keys in JavaScript backups. - Add migration, backup, mixed-owner denial, validator, and direct-adapter compatibility tests. - Document the new records and their ownership rules. ## Verification - Run `pnpm -r typecheck`. - Run `pnpm build`. - Run `pnpm db:generate`. The schema output and migration safety checks remain current. - Run `PAPERCLIP_PSQL_PATH=/Applications/Postgres.app/Contents/Versions/latest/bin/psql pnpm exec vitest run packages/shared/src/validators/native-finalization.test.ts packages/db/src/client.test.ts packages/db/src/backup-lib.test.ts server/src/__tests__/heartbeat-workspace-busy.test.ts server/src/__tests__/heartbeat-comment-wake-batching.test.ts`. All 52 tests pass. - The full local `pnpm test:run` run completed 4,688 tests. It found 30 existing macOS test-environment failures. A serial rerun with the canonical `/private/tmp` path reduced those failures to six existing listener-diagnostics and skill-browser cases. None of those suites use files in this change. - The full Linux GitHub Actions matrix passes. This includes all general-server, serialized-server, workspace, browser, build, typecheck, canary, and aggregate verification jobs. - Greptile passes at 5/5. Contributor trust, Superagent, Socket, and Snyk pass with no finding from this change. - Storybook visual regression skips by path because this pull request has no UI or Storybook change. - Confirm that the diff contains 25 files. Confirm that it contains no workflow or `pnpm-lock.yaml` changes. ## Risks - The migration adds tables, columns, indexes, a function, a trigger, and ownership constraints. It does not remove or rename existing data. - Composite foreign keys reject mixed-company, mixed-issue, and mixed-run evidence even when each ID exists. - The status-version trigger runs only when an issue status changes. Backup tests confirm that restore retains this trigger and its dependencies. - Native source identifiers are unique when present. Legacy event rows remain unchanged. - This change does not add a unique run sequence constraint. The later native writer must allocate its sequence atomically before that invariant can be safe. - Existing adapters keep their current execution and finalization paths. New heartbeat runs default to `legacy` mode. > For core feature work, check [`ROADMAP.md`](ROADMAP.md) first and discuss it in `#dev` before opening the PR. Feature PRs that overlap with planned core work may need to be redirected — check the roadmap first. See `CONTRIBUTING.md`. ## Model Used - OpenAI Codex with GPT-5. The exact deployment ID and context-window size are not exposed. The model used agentic reasoning, repository tools, code execution, and test execution. ## Checklist - [x] I have included a thinking path that traces from project context to this change - [x] I have specified the model used (with version and capability details) - [x] I have checked ROADMAP.md and confirmed this PR does not duplicate planned core work - [x] I have searched GitHub for duplicate or related PRs and linked them above - [x] I have either (a) linked existing issues with `Fixes: #` / `Closes #` / `Refs #` OR (b) described the issue in-PR following the relevant issue template - [x] I have not referenced internal/instance-local Paperclip issues or links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip` URLs) - [x] My branch name describes the change (e.g. `docs/...`, `fix/...`) and contains no internal Paperclip ticket id or instance-derived details - [x] I have run tests locally and they pass - [x] I have added or updated tests where applicable - [x] I have updated relevant documentation to reflect my changes - [x] I have considered and documented any risks above - [x] All Paperclip CI gates are green - [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups - [x] I will address all Greptile and reviewer comments before requesting merge --------- Co-authored-by: Paperclip <noreply@paperclip.ing>	2026-08-25 13:08:39 -05:00