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Author SHA1 Message Date
Devin FoleyandCody b49d178c46 fix(ui): experiments auto-recovery dialog leaves UI dimmed and locked after enabling (#9513)
## Thinking Path

> - Paperclip is the open source app people use to manage AI agents for
work
> - Operators tune instance behavior through Settings → Experiments,
where experimental features are toggled on and off
> - The task graph liveness auto-recovery experiment shows a
confirmation dialog (preview of what would be recovered) before it is
enabled
> - After confirming with "Enable only" or "Enable and run", the
dialog's Radix overlay and the `pointer-events: none` body lock were
left behind, dimming the page and blocking all interaction until a
refresh
> - The dialog was unconditionally mounted and only closed inside the
mutation's `onSuccess`, so the overlay teardown depended on the mutation
outcome and could race or never happen
> - This pull request closes the dialog before the mutation fires in
both confirm flows, clears the pending preview alongside the open flag,
and mounts the dialog conditionally so its overlay fully unmounts
> - The benefit is that enabling an experiment behaves like every other
settings change: the dialog goes away, the page stays interactive, and
errors surface in the page-level error banner instead of a dead UI

## Linked Issues or Issue Description

No public GitHub issue exists for this bug; description follows the bug
report template. Refs #4587 (the PR that introduced the configurable
liveness auto-recovery controls this dialog belongs to).

**What happened?** In Settings → Experiments, toggling on "Task graph
liveness auto-recovery" and confirming via "Enable only" left the whole
UI dimmed and unclickable. The dialog content disappeared, but the modal
overlay and the `pointer-events: none` lock on `<body>` remained until a
full page refresh.

**Expected behavior:** Confirming (or dismissing) the auto-recovery
dialog should close it completely and return the page to a fully
interactive state, with the toggle reflecting the new setting.

**Steps to reproduce:**
1. Open Settings → Experiments.
2. Toggle on "Task graph liveness auto-recovery"; the confirmation
dialog with the recovery preview appears.
3. Click "Enable only".
4. The dialog content disappears but the page stays dimmed and nothing
is clickable; refreshing restores the UI and shows the setting was
applied.

**Paperclip version or commit:** master @ 634ae12 · **Deployment mode:**
local instance · **Area:** UI only
(`ui/src/pages/InstanceExperimentalSettings.tsx`).

## What Changed

- Added a `closeRecoveryPreview()` helper that resets both
`previewDialogOpen` and `pendingPreview` together, and used it
everywhere the dialog closes (confirm flows, run-mutation success, and
user dismissal).
- "Enable only" and "Enable and run" now close the dialog *before*
firing the mutation, so overlay teardown no longer depends on the
mutation outcome; mutation errors roll back the optimistic toggle and
surface in the existing page-level error banner.
- The `RecoveryPreviewDialog` is now conditionally mounted
(`previewDialogOpen ? <RecoveryPreviewDialog … /> : null`), guaranteeing
the Radix overlay and body pointer-events lock are fully removed when
closed.
- Added a regression test that walks the real flow — toggle on → preview
dialog appears → "Enable only" — and asserts the update payload, that
the dialog text and `[data-slot="dialog-overlay"]` element are gone, and
that the toggle reads enabled.

Credit: the implementation commit was authored by Cody — thanks! This PR
packages that fix for upstream review.

## Verification

- `pnpm vitest run src/pages/InstanceExperimentalSettings.test.tsx` in
`ui/` — 17/17 tests pass, including the new regression test.
- Independently re-verified beyond the committed assertions: with a
temporary assertion (not committed), confirmed
`document.body.style.pointerEvents` is `none` while the dialog is open
and released after "Enable only" — the actual "can't interact with
anything" symptom, not just overlay DOM removal.
- Manual check: open Settings → Experiments, toggle the auto-recovery
feature, click "Enable only" — the dialog closes, the page stays
interactive, and the toggle shows enabled without a refresh.

## Risks

- Low risk: change is confined to one page component's dialog lifecycle;
no API, schema, or shared-package changes.
- Behavioral shift: the dialog now closes immediately on confirm instead
of staying open with a pending spinner until the mutation resolves.
Errors are still surfaced via the page-level error banner, and the
optimistic toggle rolls back on failure.

## Model Used

- Implementation commit authored by the AI coding agent "Cody"
(Anthropic Claude-based agent). Review, independent verification, and PR
preparation by Claude (Anthropic), model ID `claude-fable-5`, extended
thinking with tool use (code execution, test runs).

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have searched GitHub for duplicate or related PRs and linked
them above
- [x] I have either (a) linked existing issues with `Fixes: #` / `Closes
#` / `Refs #` OR (b) described the issue in-PR following the relevant
issue template
- [x] I have not referenced internal/instance-local Paperclip issues or
links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip`
URLs)
- [x] My branch name describes the change (e.g. `docs/...`, `fix/...`)
and contains no internal Paperclip ticket id or instance-derived details
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [ ] All Paperclip CI gates are green
- [ ] Greptile is 5/5 with no open P2s, recommendations, or follow-ups
- [x] I will address all Greptile and reviewer comments before
requesting merge

---------

Co-authored-by: Cody <noreply@paperclip.ing>
2026-07-13 11:52:59 -07:00
scotttongandClaude Fable 5 634ae1298f fix(ui): consolidate live/running blues; stop inbox unread badge indenting the row (#9383)
## Thinking Path

> - Paperclip is the open source app people use to manage AI agents for
work
> - The web UI leans on a shared design-token + component system so
surfaces stay visually consistent as they grow
> - Two small inconsistencies had crept in: several distinct blues were
used to signal "live/running" agent state across the sidebar, task
header, and chat thread; and in the Inbox an unread task's mark-read dot
was pushing that row's status icon and title one column right of read
rows
> - Both read as "not quite aligned" in daily use and undercut the
polish of the lists work that just landed
> - This pull request consolidates the live/running blues onto one
shared recipe and stops the unread dot from indenting the row
> - The benefit is one consistent "live" blue everywhere and Inbox rows
that line up whether read or unread

## Linked Issues or Issue Description

No public GitHub issue exists for this work; describing inline per the
bug-report template.

- **Problem**: (1) the same concept — an agent actively working —
rendered in three visibly different blues: the sidebar `N live` dot, the
task-detail "Live" badge, and the chat-thread "RUNNING" badge each used
a different token/recipe. (2) In the Inbox, unread rows carry a leading
mark-read dot that occupies the chevron column, but a per-row spacer was
still rendering in that same column — so on unread rows the status icon
+ title were shifted one column (~24px) further right than read rows.
Most visible when grouped by workspace.
- **Steps to reproduce**: open the Inbox with a mix of read and unread
tasks (group by workspace). The unread rows' status icons sit further
right than the read rows'. Separately, compare the blue of the sidebar
`N live` dot, a task's "Live" header badge, and a chat "RUNNING" badge —
they don't match.
- **Expected behavior**: unread and read rows align on the same status
column, with the unread dot centered on the workspace group chevron; and
all three "live/running" affordances share one blue.

## What Changed

- Added a shared `liveBlueBadge` recipe in `ui/src/lib/status-colors.ts`
and pointed the task-detail **Live** badge (`IssueDetail.tsx`) and the
chat-thread **RUNNING** badge (`IssueChatThread.tsx`) at it; removed the
now-redundant `brandChipBadge` usage from the chat thread and a stray
`🔵` breadcrumb prefix.
- Changed the sidebar **`N live`** dot (`SidebarNavItem.tsx`) to the
same `blue-600 / dark:blue-400` as its adjacent label text.
- **Inbox** (`Inbox.tsx`): skip the per-row leading spacer when the
unread mark-read dot is present, so the dot alone fills the chevron
column. Unread rows' status icon + title now sit in the same column as
read rows, and the dot centers on the workspace group chevron.
- **Test** (`Inbox.test.tsx`): added a regression test asserting an
unread leaf row renders the mark-read dot and drops the spacer, while a
read row keeps the spacer.

## Verification

- `pnpm typecheck` — clean (all packages)
- `pnpm check:token-gates` — 3/3 CLEAN
- `cd ui && pnpm vitest run src/pages/Inbox.test.tsx` — 14/14 (includes
the new regression test)
- Full Storybook visual suite (514 stories, both themes) — green locally
(CI cannot run this suite yet — the baseline-manifest archive is
unpublished, a pre-existing condition from #9134)
- Manual (workspace-grouped Inbox, 2× dark): measured the unread badge
center at the same x as the workspace chevron (276 = 276) and the
unread-row status icon at the same x as read-row status icons (292 =
292). Before/after screenshots in a PR comment below.

## Risks

Low risk — presentation only. No data, routing, or state changes. The
blue consolidation is a token/class swap; the Inbox change removes a
redundant spacer element on unread rows only (read rows and
non-grouped/mobile views are unaffected). The unread-row behavior is
covered by the new unit test.

## Model Used

Claude (Anthropic), Opus 4.8 — model id `claude-opus-4-8`; extended
thinking + tool use, driving local verification (typecheck, token gates,
vitest, Playwright visual suite + pixel measurements).

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have searched GitHub for duplicate or related PRs and linked
them above
- [x] I have either (a) linked existing issues with `Fixes: #` / `Closes
#` / `Refs #` OR (b) described the issue in-PR following the relevant
issue template
- [x] I have not referenced internal/instance-local Paperclip issues or
links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip`
URLs)
- [x] My branch name describes the change (e.g. `docs/...`, `fix/...`)
and contains no internal Paperclip ticket id or instance-derived details
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [x] All Paperclip CI gates are green
- [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups
- [x] I will address all Greptile and reviewer comments before
requesting merge

---------

Co-authored-by: Claude Fable 5 <noreply@anthropic.com>
2026-07-13 08:53:03 -07:00
DottaandPaperclip c36f1a4afd fix(ui): make mobile decision rows readable (#9472)
## Thinking Path

> - Paperclip is the open source control plane people use to coordinate
AI-agent companies
> - Human operators use the Decisions attention queue to review and
resolve work that needs them
> - Decision rows were composed as a fixed content column plus a
right-side controls column
> - At phone widths, timestamps, actions, menus, and evidence thumbnails
compressed the decision headline until it was barely readable
> - This pull request makes each row respond to its own container width
and stacks metadata, content, evidence, and actions on narrow surfaces
while preserving the dense desktop layout
> - The benefit is a useful, thumb-reachable Decisions workflow on
phones and narrow side panels without regressing wide-screen density or
scrolling performance

## Linked Issues or Issue Description

No public GitHub issue exactly matches this bug, so it is described here
using the bug-report fields.

**What happened**

Decision rows used a fixed two-column layout. On narrow screens, the
right-hand timestamp, overflow menu, decision buttons, and optional
thumbnails squeezed the headline into a truncated sliver.

**Expected behavior**

Decision headlines should remain readable on mobile, supporting context
should flow below the headline, and primary actions should remain easy
to tap. Wide rows should retain the compact desktop presentation.

**Steps to reproduce**

1. Open the Decisions / What needs me surface with populated attention
items.
2. Reduce the row container to a phone-width layout (approximately
390px).
3. Observe rows with multiple actions or evidence thumbnails.

**Paperclip version / deployment mode**

Current `master`, board UI in local or hosted deployments.

**Related public work found during dedup search**

- Refs: #9311 — original What needs me attention queue work.
- Refs: #9468 — recent Decisions scrolling performance work preserved by
this change.

## What Changed

- Reworked `AttentionQueueRow` into a container-query-driven vertical
stack on narrow surfaces, with the existing compact layout restored at
wide row widths.
- Made decision titles wrap to two lines, moved project/evidence context
below the headline, and promoted actions to full-width mobile tap
targets.
- Preserved upstream row memoization and `content-visibility` scrolling
optimizations while rebasing onto current `master`.
- Added three 390px Storybook scenarios covering populated rows,
type/detail variants, and snoozed/dismissed curtains.
- Updated the focused row test to assert the new thumbnail/context
alignment.

## Verification

- `pnpm exec vitest run ui/src/components/AttentionQueueRow.test.tsx` —
1 file passed, 16 tests passed.
- `pnpm check:token-gates` — all token gates clean.
- `pnpm --filter @paperclipai/ui typecheck` — passed.
- `pnpm --filter @paperclipai/ui build-storybook` — completed
successfully.
- `git diff --check public/master...HEAD` — passed.

## Risks

- Low risk: the behavior is isolated to the Decisions row presentation
and its Storybook coverage.
- Container-query breakpoints could need future visual tuning for
unusual embedded widths, but the wide layout remains available at the
row-level breakpoint.
- The mobile layout increases row height by design in exchange for
readable content and usable actions.

> For core feature work, check [`ROADMAP.md`](ROADMAP.md) first and
discuss it in `#dev` before opening the PR. Feature PRs that overlap
with planned core work may need to be redirected — check the roadmap
first. See `CONTRIBUTING.md`.

## Model Used

OpenAI Codex CLI coding agent. The exact model ID and context-window
size are not exposed to this runtime; reasoning, repository editing,
shell execution, and test execution capabilities were enabled.

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have searched GitHub for duplicate or related PRs and linked
them above
- [x] I have either (a) linked existing issues with `Fixes: #` / `Closes
#` / `Refs #` OR (b) described the issue in-PR following the relevant
issue template
- [x] I have not referenced internal/instance-local Paperclip issues or
links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip`
URLs)
- [x] My branch name describes the change (e.g. `docs/...`, `fix/...`)
and contains no internal Paperclip ticket id or instance-derived details
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [x] All Paperclip CI gates are green
- [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups
- [x] I will address all Greptile and reviewer comments before
requesting merge

---------

Co-authored-by: Paperclip <noreply@paperclip.ing>
2026-07-12 21:28:38 -05:00
8a0db228a6 perf(ui): improve Decisions scrolling performance (#9468)
## Thinking Path

> - Paperclip is the open source app people use to manage AI agents for
work
> - Operators use the Decisions page to review an uncapped attention
feed across active, snoozed, and dismissed items
> - Large feeds mounted every row eagerly, and routine interactions
re-rendered the full queue
> - That made initial paint and scrolling progressively slower as
decision history accumulated
> - This pull request bounds rendering, stabilizes row props, and lets
off-screen rows skip layout and paint work
> - The benefit is a responsive Decisions page even for companies with
large attention histories

## Linked Issues or Issue Description

### What happened?

Opening `/decisions` for a company with a large attention history
eagerly mounted every visible-feed row. Expanding, selecting,
dismissing, snoozing, or restoring an item could also re-render the
entire queue.

### Expected behavior

The page should render a bounded initial window, progressively reveal
more rows near the scroll boundary, and avoid re-rendering unaffected
rows during interactions.

### Steps to reproduce

1. Populate a company with hundreds of attention items.
2. Open `/decisions`.
3. Scroll and interact with individual rows.
4. Observe increasing initial render, layout, paint, and interaction
cost on the previous implementation.

### Paperclip version or commit

Reproduced on `master` before this PR.

### Deployment and installation

Local development, built from source. This is a core UI issue, not
adapter- or database-specific.

### Additional context

Searched open public issues and PRs; no duplicate was found.

## What Changed

- Added a pure `planAttentionRenderRows` helper that allocates one
render budget across active groups and open snoozed/dismissed curtains
in document order.
- Render 50 rows initially and add 100 more when the Decisions page
approaches the scroll boundary.
- Memoized `AttentionQueueRow`, stabilized parent callbacks and inbox
dismissal actions, and passed row items through a shared expand
callback.
- Added `content-visibility: auto` and intrinsic containment so
accumulated off-screen rows avoid unnecessary layout and paint work.
- Added render-plan coverage and a regression test proving identical row
props do not re-render after a parent update.

## Verification

- `pnpm -C ui typecheck`
- `pnpm -C ui exec vitest run src/lib/attention.test.ts
src/components/AttentionQueueRow.test.tsx
src/components/Sidebar.test.tsx src/pages/Inbox.test.tsx` — 96 tests
passed
- `pnpm check:token-gates` — all gates clean

## Risks

- Low risk: the change is UI-only and does not alter API or database
contracts.
- The main behavioral risk is incorrect row-budget accounting across
collapsed groups or open curtains; the pure planner has focused tests
for ordering, truncation, and collapsed/closed sections.
- Progressive rendering means rows beyond the current budget are
intentionally absent until scrolling nears the boundary, matching the
existing Issues list pattern.

> This is a targeted performance fix and does not overlap planned core
feature work in `ROADMAP.md`.

## Model Used

- Anthropic Claude Fable 5 assisted with the implementation using
repository tools and code execution.
- OpenAI Codex `gpt-5.6-sol` prepared and verified the PR with high
reasoning effort, repository tools, shell execution, and
GitHub/Paperclip API access. The runtime did not expose a context-window
size.

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have searched GitHub for duplicate or related PRs and linked
them above
- [x] I have either (a) linked existing issues with `Fixes: #` / `Closes
#` / `Refs #` OR (b) described the issue in-PR following the relevant
issue template
- [x] I have not referenced internal/instance-local Paperclip issues or
links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip`
URLs)
- [x] My branch name describes the change (e.g. `docs/...`, `fix/...`)
and contains no internal Paperclip ticket id or instance-derived details
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [x] I have updated relevant documentation to reflect my changes (no
documentation changes were required for this UI-only behavior)
- [x] I have considered and documented any risks above
- [x] All Paperclip CI gates are green
- [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups
- [x] I will address all Greptile and reviewer comments before
requesting merge

---------

Co-authored-by: Claude Fable 5 <noreply@anthropic.com>
Co-authored-by: Paperclip <noreply@paperclip.ing>
2026-07-12 20:44:52 -05:00
DottaandPaperclip e4e12bfb89 fix(workspaces): persist readiness state and validate ports (#9408)
## Thinking Path

> - Paperclip is the open source app people use to manage AI agents for
work
> - Execution workspaces can run managed services that must report
reliable lifecycle and readiness state
> - Service startup previously waited for readiness before committing
the starting row, making concurrent control actions see stale state
> - Fixed service ports also needed clearer configuration and ownership
diagnostics to avoid cross-workspace collisions
> - This pull request persists startup state before readiness, validates
port ownership, and exposes configurable service ports in the workspace
UI
> - The benefit is dependable service controls and actionable
diagnostics when workspace runtimes start slowly or compete for ports

## Linked Issues or Issue Description

### What happened?

Slow-starting workspace services could remain invisible to concurrent
stop/restart controls until readiness completed, and fixed-port
conflicts lacked enough ownership context for safe repair.

### Expected behavior

A starting service is persisted immediately, control operations can
observe it, configured ports are editable, and conflicts identify the
owning process/workspace.

### Steps to reproduce

1. Configure a workspace service that delays binding its HTTP port.
2. Start the service and immediately request another control action.
3. Observe stale persisted state before this change.
4. Configure two workspaces for the same fixed port and observe limited
conflict diagnostics.

### Paperclip version or commit

`origin/master` at `02e2dd271`

### Deployment mode

Local dev; built from source; not adapter-specific; database-backed
workspace runtime state.

## What Changed

- Commit the `starting` runtime-service row before waiting for readiness
and transition it after the probe completes.
- Add port-owner inspection and cross-workspace conflict details to
local service supervision.
- Preserve configurable runtime service ports through workspace
configuration updates.
- Surface service-port editing and validation in the execution workspace
details UI.
- Add server and UI regression coverage for slow readiness, concurrent
controls, port persistence, and conflict diagnostics.

## Verification

- `vitest --project @paperclipai/server
src/__tests__/workspace-runtime.test.ts
src/__tests__/execution-workspaces-service.test.ts` — 118 tests passed.
- `vitest --project @paperclipai/ui
src/pages/ExecutionWorkspaceDetail.service-ports.test.ts` — 4 tests
passed.
- `node scripts/check-token-gates.mjs` — all token gates clean.

## Risks

- Moderate risk: changes touch workspace service lifecycle persistence
and local process/port inspection.
- No schema migration is required; tests exercise slow readiness,
concurrent control, persisted ports, and cross-workspace conflicts.

> For core feature work, check [`ROADMAP.md`](ROADMAP.md) first and
discuss it in `#dev` before opening the PR. Feature PRs that overlap
with planned core work may need to be redirected — check the roadmap
first. See `CONTRIBUTING.md`.

## Model Used

- OpenAI Codex, GPT-5.3 Codex, reasoning with repository tool use and
code execution; context-window size was not exposed by the runtime.

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have searched GitHub for duplicate or related PRs and linked
them above
- [x] I have either (a) linked existing issues with `Fixes: #` / `Closes
#` / `Refs #` OR (b) described the issue in-PR following the relevant
issue template
- [x] I have not referenced internal/instance-local Paperclip issues or
links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip`
URLs)
- [x] My branch name describes the change (e.g. `docs/...`, `fix/...`)
and contains no internal Paperclip ticket id or instance-derived details
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [x] All Paperclip CI gates are green
- [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups
- [x] I will address all Greptile and reviewer comments before
requesting merge

---------

Co-authored-by: Paperclip <noreply@paperclip.ing>
2026-07-11 03:02:21 -05:00
DottaandPaperclip 07e528256e fix(ui): bound shared polling cache (#9406)
## Thinking Path

> - Paperclip is the open source app people use to manage AI agents for
work
> - The board coordinates repeated API polling across tabs to reduce
redundant requests
> - The shared polling coordinator retained cached result and
publication entries after the last subscriber left
> - Dynamic polling keys could therefore grow those maps for the
lifetime of the page
> - This pull request evicts inactive keys while preserving useful
short-lived handoff state and request deduplication
> - The benefit is bounded client memory without regressing cross-tab
polling behavior

## Linked Issues or Issue Description

### What happened?

Shared polling cached result/publication entries indefinitely after a
polling key no longer had subscribers.

### Expected behavior

Inactive keys are eventually removed, while recently published values
remain available long enough for normal subscriber handoff.

### Steps to reproduce

1. Create and unsubscribe many distinct shared polling keys in one page
lifetime.
2. Inspect the coordinator's cached results and publication timestamps.
3. Observe that the old maps retain every historical key.

### Paperclip version or commit

`origin/master` at `02e2dd271`

### Deployment mode

Local dev; built from source; not adapter-specific; not
database-related.

## What Changed

- Track inactive polling keys and schedule bounded cache eviction.
- Preserve cached data while a key is active or inside its retention
window.
- Cancel stale cleanup timers when polling resumes and clear coordinator
caches during disposal.
- Add focused fake-timer coverage for retention, resubscription, and
disposal behavior.

## Verification

- `vitest --project @paperclipai/ui src/lib/cross-tab-poll.test.ts` — 11
tests passed.

## Risks

- Low-to-moderate risk: eviction timing affects client polling
coordination.
- Tests cover the retention boundary, resumed subscriptions, and
coordinator cleanup to reduce regression risk.

> For core feature work, check [`ROADMAP.md`](ROADMAP.md) first and
discuss it in `#dev` before opening the PR. Feature PRs that overlap
with planned core work may need to be redirected — check the roadmap
first. See `CONTRIBUTING.md`.

## Model Used

- OpenAI Codex, GPT-5.3 Codex, reasoning with repository tool use and
code execution; context-window size was not exposed by the runtime.

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have searched GitHub for duplicate or related PRs and linked
them above
- [x] I have either (a) linked existing issues with `Fixes: #` / `Closes
#` / `Refs #` OR (b) described the issue in-PR following the relevant
issue template
- [x] I have not referenced internal/instance-local Paperclip issues or
links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip`
URLs)
- [x] My branch name describes the change (e.g. `docs/...`, `fix/...`)
and contains no internal Paperclip ticket id or instance-derived details
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [x] All Paperclip CI gates are green
- [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups
- [x] I will address all Greptile and reviewer comments before
requesting merge

---------

Co-authored-by: Paperclip <noreply@paperclip.ing>
2026-07-11 03:02:14 -05:00
DottaandPaperclip 5618ea91f6 fix(ui): wrap company skill source paths (#9405)
## Thinking Path

> - Paperclip is the open source app people use to manage AI agents for
work
> - Company skills expose their source metadata in a narrow details
sidebar
> - Long filesystem paths and repository locators were truncated, hiding
the part operators often need to distinguish sources
> - The sidebar can preserve the complete value by wrapping at arbitrary
path boundaries instead of ellipsizing it
> - This pull request renders full source paths and repository labels
without widening the layout
> - The benefit is that operators can inspect and copy the actual skill
source from the UI

## Linked Issues or Issue Description

### Pre-submission checklist

- [x] I have searched existing open and closed issues and this is not a
duplicate.
- [x] I can reproduce this on `master`.
- [x] I have confirmed the behavior originates in Paperclip itself, not
an agent adapter, API provider, or local configuration.

### What happened?

Long company-skill source paths and repository locators were truncated
in the skill details sidebar.

### Expected behavior

The complete source value remains visible and wraps within the available
sidebar width.

### Steps to reproduce

1. Open a company skill whose source path is longer than the details
sidebar.
2. View the Source field.
3. Observe that the old UI replaces the middle or end of the value with
an ellipsis.

### Paperclip version or commit

`origin/master` at `02e2dd271`.

### Deployment mode

Local dev (`pnpm dev`).

### Installation method

Built from source (`pnpm dev` / `pnpm build`).

### Agent adapter(s) involved

None; this is a company-skills UI layout issue.

### Logs, configuration, or screenshots

Not applicable; the behavior is directly visible in the Source field.

### Additional context

The narrow sidebar should remain width-constrained. Wrapping
intentionally trades vertical space for full source inspectability.

## What Changed

- Replace source-path truncation with width-constrained arbitrary
wrapping.
- Apply the same wrapping behavior to linked repository/source labels.
- Add a regression test proving the full long path is rendered without
ellipsis.

## Verification

- `vitest --project @paperclipai/ui src/pages/CompanySkills.test.tsx` —
11 tests passed.
- `node scripts/check-token-gates.mjs` — all token gates clean.

## Risks

- Low risk: the change is limited to text layout in the company skill
details view.
- Very long unbroken values may make the Source section taller,
intentionally trading vertical space for inspectability.

> For core feature work, check [`ROADMAP.md`](ROADMAP.md) first and
discuss it in `#dev` before opening the PR. Feature PRs that overlap
with planned core work may need to be redirected — check the roadmap
first. See `CONTRIBUTING.md`.

## Model Used

- OpenAI Codex, GPT-5.3 Codex, reasoning with repository tool use and
code execution; context-window size was not exposed by the runtime.

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have searched GitHub for duplicate or related PRs and linked
them above
- [x] I have either (a) linked existing issues with `Fixes: #` / `Closes
#` / `Refs #` OR (b) described the issue in-PR following the relevant
issue template
- [x] I have not referenced internal/instance-local Paperclip issues or
links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip`
URLs)
- [x] My branch name describes the change (e.g. `docs/...`, `fix/...`)
and contains no internal Paperclip ticket id or instance-derived details
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [ ] All Paperclip CI gates are green
- [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups
- [x] I will address all Greptile and reviewer comments before
requesting merge

---------

Co-authored-by: Paperclip <noreply@paperclip.ing>
2026-07-11 03:02:11 -05:00
DottaandPaperclip 02e2dd271b feat(ui): add selection debug instrumentation (#9397)
Adds debug-gated selection instrumentation and focused tests for issue document annotations.

Co-Authored-By: Paperclip <noreply@paperclip.ing>
2026-07-10 21:20:32 -05:00
scotttongandClaude Opus 4.8 7fd321d622 feat(ui): use Lucide icons for task status glyphs (#9395)
## Thinking Path

> - Paperclip is the open source app people use to manage AI agents for
work
> - Operators scan task state constantly, so the task **status**
vocabulary (backlog / todo / in progress / in review / done / blocked /
cancelled) has to read instantly
> - Those statuses render through one shared component, `StatusGlyph`,
whose icons were hand-rolled SVG geometry lifted from an internal spec
> - Hand-rolled glyphs are harder to reason about, drift from the rest
of the UI (which uses Lucide everywhere else), and mix fill/stroke
styles across statuses
> - This pull request swaps the hand-rolled geometry for named Lucide
icons — one clean, consistent icon family — with no change to colours,
sizing, or accessibility
> - The benefit is a status icon set that is consistent with the rest of
the app's iconography, trivially adjustable (change a mapping, not SVG
path math), and simpler to maintain

## Linked Issues or Issue Description

No existing public GitHub issue. Describing the change in-PR
(feature/polish):

**Problem / motivation.** The task status icons in `StatusGlyph` were
bespoke inline SVGs (a half-filled disc for *in progress*, a filled disc
+ knockout check for *done*, ring+bar for *blocked*, ring+slash for
*cancelled*, etc.). The rest of the UI uses [Lucide](https://lucide.dev)
icons, so the status set was the odd one out — and its mixed fill/stroke
shapes were harder to scan and to tweak.

**Proposed solution.** Map each status to a Lucide icon and render that
instead:

| Status | Lucide icon |
| --- | --- |
| backlog | `circle-dashed` |
| todo | `circle` |
| in_progress | `rotate-cw` |
| in_review | `circle-dot` |
| done | `circle-check` |
| blocked | `circle-minus` |
| cancelled | `ban` |
| in_queue (covered-blocked) | `circle-minus`, recoloured blue |

Colours (the `--status-task-icon-*` tokens), the `sm/md/lg` size scale,
`currentColor` recolouring, and the `role="img"` / `aria-label`
behaviour are all unchanged — only the shapes change.

**Alternatives considered.** Keeping the bespoke geometry (rejected:
inconsistent with the app and harder to maintain).

**Related PRs** (linked for reviewer context, not dependencies):
- Refs #8580 — the merged PR that established the current hand-rolled
status glyphs this PR restyles.
- Refs #8838 — open PR forwarding Radix trigger props through
`StatusGlyph`; touches the same component (no overlap with this change).
- Refs #1760 — open proposal to redesign the *cancelled* status icon
specifically; this PR moves cancelled to Lucide `ban`.

## What Changed

- `ui/src/components/StatusGlyph.tsx`: replaced the per-status
hand-rolled SVG `glyphBody()` geometry with a `status → Lucide icon` map
(`circle-dashed`, `circle`, `rotate-cw`, `circle-dot`, `circle-check`,
`circle-minus`, `ban`). Kept the token-driven colour wiring, size scale,
`currentColor` recolouring, a11y label handling, and the `in_queue` =
blocked-icon-recoloured-blue behaviour.
- `ui/src/components/StatusGlyph.test.tsx`: updated to lock the new icon
mapping (per-status Lucide class, size scale, colour var, `in_queue`,
a11y) instead of the old geometry.

Net: two files, +74 / −138 (the component got smaller). Because every
status surface (list, board, detail header, status picker,
sub-task/blocked-by pills, chips) routes through `StatusGlyph`, this
single-component edit covers them all.

## Verification

- `pnpm check:token-gates` → **3/3 clean** (no hardcoded
colour/spacing/font values introduced).
- `pnpm typecheck` → clean across all packages.
- `cd ui && pnpm vitest run` → **2509/2509 passing**, including the
updated `StatusGlyph` test.
- Manual: ran the worktree dev server and confirmed the new icons render
everywhere (task list, task detail, related-task chips, and the status
picker showing all seven).

**Storybook visual-regression note:** this is an intentional visual
change, so the status-icon stories will diff against the published
baseline. The baseline snapshots need to be regenerated and republished
by a maintainer (`pnpm test:storybook-visual:update` from a trusted
environment) as part of accepting this change — the visual-regression CI
check is expected to be red until then. No baseline is published in the
environment this PR was authored in, so that step is left to a
maintainer.

## Risks

- **Low risk / cosmetic.** No logic, data, or API changes — only the
rendered icon shapes. Colours, sizes, and accessibility labels are
unchanged.
- The most noticeable shifts are *in progress* (half-disc → rotating
arrow), *done* (solid disc+check → outline circle+check), and
*cancelled* (ring+slash → ban). These are deliberate.
- The only CI check expected to fail is the Storybook visual-regression
job, pending a maintainer baseline update (see Verification).

## Model Used

Claude Opus 4.8 (`claude-opus-4-8`), run in Claude Code with extended
thinking and tool use (file edits, local test runs, browser-driven
visual verification).

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have searched GitHub for duplicate or related PRs and linked
them above
- [x] I have either (a) linked existing issues with `Fixes: #` / `Closes
#` / `Refs #` OR (b) described the issue in-PR following the relevant
issue template
- [x] I have not referenced internal/instance-local Paperclip issues or
links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip`
URLs)
- [x] My branch name describes the change (e.g. `docs/...`, `fix/...`)
and contains no internal Paperclip ticket id or instance-derived details
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [ ] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [ ] All Paperclip CI gates are green
- [ ] Greptile is 5/5 with no open P2s, recommendations, or follow-ups
- [x] I will address all Greptile and reviewer comments before
requesting merge

Co-authored-by: Claude Opus 4.8 <noreply@anthropic.com>
2026-07-10 20:18:33 -05:00
Devin Foley 49d1abc458 fix(ui): detail the env unsaved-changes banner and guard against draft loss (#9391)
## Thinking Path

> - Paperclip is the open source app people use to manage AI agents for
work
> - Instance settings include an Environments section where operators
configure execution environments, each with an environment-variables
editor for run-time bindings
> - The editor showed a bare "Unsaved changes" banner that never said
which variables changed, sometimes appeared the moment a saved config
was opened (a lossy round-trip through the editor's emit rules made
clean values look dirty), and the environment form let you navigate away
without any confirmation, silently dropping the draft
> - Operators could not tell what was unsaved, distrusted the phantom
banner, and lost half-finished environment edits to a stray click — the
agent configuration page already confirms before discarding, so
environments behaved inconsistently
> - This pull request lists the new/edited/removed variable names under
the banner, normalizes both sides of the dirty comparison so saved
values no longer look dirty on open, and confirms before cancel, in-app
navigation, or tab unload while the form has unsaved changes
> - The benefit is that the banner is trustworthy and specific, and
unsaved environment edits can no longer be lost without an explicit
confirmation

## Linked Issues or Issue Description

Related (not fixed by this PR): #8930 introduced the current
environment-variables editor and its unsaved-changes banner; #9386 moved
environment create/edit from a modal to routed pages, which this PR's
navigation guard builds on.

No existing public issue for the defects themselves; described per the
bug report template:

**What happened?**

The environment-variables editor in Environments settings showed a bare
"Unsaved changes" banner with no indication of which variables changed.
For some saved configurations (names with surrounding whitespace,
incomplete secret references, duplicate names differing only by
whitespace) the banner appeared immediately on opening the edit form,
before any user input. Navigating away from the environment form —
cancel, an in-app link, or closing the tab — silently discarded the
draft with no confirmation.

**Expected behavior**

The banner should say which variables are new, edited, or removed; a
freshly opened saved configuration should show no banner; and leaving
the form with unsaved changes should require an explicit confirmation,
consistent with the agent configuration page.

**Steps to reproduce**

1. Open Settings → Instance settings → Environments and edit an
environment whose saved config round-trips lossily (e.g. an env var name
stored with trailing whitespace) — the "Unsaved changes" banner appears
with no user edits.
2. Add or edit a variable — the banner gives no hint of what is unsaved.
3. With a dirty draft, click any in-app link or Cancel — the draft is
dropped with no confirmation.

**Deployment mode**

Self-hosted (local development instance), reproducible on `master`.

## What Changed

- The unsaved-changes banner in `EnvironmentVariablesEditor` now renders
a change summary line — `New: … · Edited: … · Removed: …` — showing up
to three names per group with a `+N more` overflow and the full list in
a `title` tooltip. A rename shows as one addition plus one removal.
- Dirty detection normalizes both the committed value and the draft
through the same rules the editor uses when emitting values (trimmed
names, incomplete secret refs dropped, last-writer-wins on trimmed
duplicates), so a saved config that round-trips lossily no longer shows
a phantom banner on first open.
- The editor exposes an `onDirtyChange` callback and warns via
`beforeunload` while its local draft is dirty.
- The environment create/edit page (`CompanyEnvironments`) tracks a
payload-level baseline fingerprint of the form as initialized and treats
the page as having unsaved changes when the current form differs from it
or the editor draft is dirty. While dirty it confirms ("Discard unsaved
environment changes?") on Cancel, intercepts same-origin in-app link
clicks, and warns on tab unload.

## Verification

- `node_modules/.bin/vitest run
ui/src/pages/CompanyEnvironments.test.tsx
ui/src/components/environment-variables-editor/EnvironmentVariablesEditor.test.tsx`
— 48 tests pass, including new coverage for: the change-summary banner
text, no phantom banner for lossy round-trip values, beforeunload only
while dirty, cancel confirmation on the edit page, and unload/link-click
warnings after edits are staged into the form.
- `tsc -b` in `ui/` passes.
- Manual: edit an environment, add/edit/remove variables, observe the
summary line; click Cancel or an in-app link and observe the
confirmation; save and observe navigation proceeds without prompting.

## Risks

- Low risk, UI-only. The click interceptor is scoped to same-origin
anchor navigation while the environment form page has unsaved changes
and is removed on cleanup; modified-key/middle-button clicks and
external links are left alone.
- The dirty-normalization intentionally ignores differences the editor
could never persist (incomplete secret refs, untrimmed duplicate names);
those were previously reported as unsaved changes that could not be
saved away.

## Model Used

- Claude Fable 5 (`claude-fable-5`, Anthropic) via Claude Code, with
extended thinking and tool use (code editing, test execution).

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have searched GitHub for duplicate or related PRs and linked
them above
- [x] I have either (a) linked existing issues with `Fixes: #` / `Closes
#` / `Refs #` OR (b) described the issue in-PR following the relevant
issue template
- [x] I have not referenced internal/instance-local Paperclip issues or
links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip`
URLs)
- [x] My branch name describes the change (e.g. `docs/...`, `fix/...`)
and contains no internal Paperclip ticket id or instance-derived details
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [ ] All Paperclip CI gates are green
- [ ] Greptile is 5/5 with no open P2s, recommendations, or follow-ups
- [x] I will address all Greptile and reviewer comments before
requesting merge
2026-07-10 17:14:28 -07:00
0f9b1d399c fix(ui): make environment edit a routed page (#9386)
## Thinking Path

> - Paperclip is the open source app people use to manage AI agents for
work
> - Instance settings include an Environments section where operators
configure sandbox/SSH/local execution environments, including
interactive custom-image setup sessions with a browser terminal
> - The environment create/edit form was rendered inside a modal dialog,
so pressing Escape anywhere — including inside the embedded SSH terminal
while capturing a snapshot — closed the whole modal and destroyed the
in-progress session
> - Environment editing is a heavyweight, long-lived flow; losing it to
a reflexive Escape keypress is destructive and surprising
> - This pull request converts environment create/edit from a modal into
routed standalone pages, so Escape no longer dismisses the form
> - The benefit is that terminal sessions and half-completed edits
survive Escape, and the flow gets shareable URLs and normal back/forward
navigation

## Linked Issues or Issue Description

No existing public issue; described per the bug report template:

**What happened?**
While editing an environment's sandbox snapshot in the embedded SSH
terminal, pressing Escape (e.g. to exit a mode inside the terminal)
closed the entire environment edit modal, discarding the setup session
and any unsaved form state.

**Expected behavior**
Escape inside the terminal or form should not dismiss the environment
editor. A heavyweight flow like environment configuration should be a
standalone page where Escape behaves as expected within the focused
widget.

**Steps to reproduce**
1. Open Instance settings → Environments and edit a sandbox environment
2. Start a custom image setup session and focus the browser terminal
3. Press Escape
4. The modal closes and the session context is lost

## What Changed

- Converted the environment create/edit dialog in
`CompanyEnvironments.tsx` into routed pages at
`/company/settings/instance/environments/new` and
`/company/settings/instance/environments/:environmentId/edit`
- Registered the new routes in `App.tsx` and wired breadcrumbs for the
list/create/edit states
- Form state now initializes from the route (create vs edit) instead of
dialog open/close state, and successful saves navigate back to the
environments list
- Updated `CompanyEnvironments.test.tsx` and `CompanySettings.test.tsx`
to render through a router with the new routes and assert against the
routed form page instead of a dialog

## Verification

- `pnpm vitest run ui/src/pages/CompanyEnvironments.test.tsx
ui/src/pages/CompanySettings.test.tsx` — 22/22 passing
- `tsc --noEmit` on the `ui` package — clean
- Behavioral coverage: the updated tests exercise the routed create/edit
pages end to end (open edit via the list, interact with the
setup-session controls on the form page, save navigates back to the
list); with the form no longer in a dialog there is no Escape-close
handler to trigger

## Risks

- Low risk; UI-only routing change. Deep links into the old modal state
do not exist (the modal had no URL), so no redirects are needed
- The edit page resolves the environment from the route param; a
stale/unknown id falls back to the environments list

## Model Used

- Claude (Anthropic), model ID `claude-fable-5` (Fable 5), extended
thinking enabled, agentic tool use via Claude Code

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have searched GitHub for duplicate or related PRs and linked
them above
- [x] I have either (a) linked existing issues with `Fixes: #` / `Closes
#` / `Refs #` OR (b) described the issue in-PR following the relevant
issue template
- [x] I have not referenced internal/instance-local Paperclip issues or
links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip`
URLs)
- [x] My branch name describes the change (e.g. `docs/...`, `fix/...`)
and contains no internal Paperclip ticket id or instance-derived details
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [ ] All Paperclip CI gates are green
- [ ] Greptile is 5/5 with no open P2s, recommendations, or follow-ups
- [x] I will address all Greptile and reviewer comments before
requesting merge

Co-authored-by: Cody <cody@paperclip.ing>
Co-authored-by: Paperclip <noreply@paperclip.ing>
2026-07-10 15:36:03 -07:00
DottaandPaperclip b15115e05b fix(ui): keep rendered markdown list markers visible (#9359)
## Thinking Path

> - Paperclip is the open source app people use to manage AI agents for
work
> - The board UI renders agent/user-authored Markdown in task
descriptions, comments, and other work-thread surfaces
> - Those Markdown surfaces often live inside cards and containers that
constrain overflow
> - Ordered-list markers are painted outside the list content box, so
too little inline padding can clip multi-digit markers at the left edge
> - This pull request keeps the shared Markdown list gutter compact
while giving ordered lists enough marker space for two- and three-digit
counters
> - The benefit is that long numbered lists in board-facing Markdown
render correctly without widening unordered-list gutters or changing
API, data, or editor behavior

## Linked Issues or Issue Description

No public GitHub issue found.

Bug description:
- What happened: rendered Markdown ordered lists with multi-digit items
could show clipped marker digits when the list was flush against an
overflow-constrained container.
- Expected behavior: ordered-list markers such as `10.` and `100.`
should render fully in task descriptions and comments.
- Steps to reproduce: render a `.paperclip-markdown` ordered list with
at least 100 items inside a container that clips overflow and has no
extra left gutter.
- Paperclip version/commit: current `master` before this PR.
- Deployment mode: board UI, deployment-mode independent.

Related search result:
- Refs #2049 because it also touches rendered Markdown list
presentation, but it styles GFM task-list checkboxes and does not
address ordered-list marker clipping.

## What Changed

- Set the shared `.paperclip-markdown` list padding to a compact
`1.5rem` baseline for bullets and lists.
- Added an ordered-list-only `2.5rem` padding override so
outside-positioned multi-digit ordered-list markers have enough
inline-start room.
- Added a focused stylesheet regression test that verifies
unordered-list gutters stay compact while ordered lists keep the larger
marker gutter.
- Restored the exact maintainer-skill marker phrase expected by the
existing server skill utility contract test, fixing an unrelated
latest-head CI failure from current `master`.

## Verification

- `pnpm --filter @paperclipai/ui exec vitest run
src/components/MarkdownListStyles.test.ts`
- `pnpm check:token-gates`
- `pnpm --filter @paperclipai/ui build`
- `pnpm exec vitest run
server/src/__tests__/paperclip-skill-utils.test.ts`

## Risks

- Low risk: ordered lists in rendered Markdown get a larger left gutter;
unordered lists keep a smaller shared gutter.
- Low risk: the skill-doc marker change is text-only and matches the
existing server test contract.
- No database, API, migration, auth, adapter, or telemetry changes.

> For core feature work, check [`ROADMAP.md`](ROADMAP.md) first and
discuss it in `#dev` before opening the PR. Feature PRs that overlap
with planned core work may need to be redirected — check the roadmap
first. See `CONTRIBUTING.md`.

## Model Used

OpenAI Codex, GPT-5 coding agent, tool-enabled software-engineering
session. Context window size was not exposed by the runtime.

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have searched GitHub for duplicate or related PRs and linked
them above
- [x] I have either (a) linked existing issues with `Fixes: #` / `Closes
#` / `Refs #` OR (b) described the issue in-PR following the relevant
issue template
- [x] I have not referenced internal/instance-local Paperclip issues or
links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip`
URLs)
- [x] My branch name describes the change (e.g. `docs/...`, `fix/...`)
and contains no internal Paperclip ticket id or instance-derived details
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [x] All Paperclip CI gates are green
- [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups
- [x] I will address all Greptile and reviewer comments before
requesting merge

---------

Co-authored-by: Paperclip <noreply@paperclip.ing>
2026-07-10 17:12:25 -05:00
36ec79c196 feat: add attention queue and Decisions surface (#9380)
## Thinking Path

> - Paperclip is the control plane for autonomous AI companies, where
operators need a reliable way to find and act on work awaiting their
input.
> - The attention and issue-thread interaction subsystems expose those
decision points across server APIs and the board UI.
> - The previous navigation and interaction presentation left these
actions fragmented and did not offer a controlled rollout for the
Decisions surface.
> - This branch adds the attention feed, richer interaction cards,
grouping, dismiss/snooze behavior, and a gated Decisions sidebar entry.
> - It also keeps experimental settings and API contracts synchronized,
with an idempotent migration for the new dismissal state.
> - This pull request delivers the complete, tested attention/Decisions
experience as one reviewable unit.

## Linked Issues or Issue Description

- Adds an operator-focused attention queue and Decisions experience:
grouped decision cards, semantic interaction actions, dismiss/snooze
handling, resilient interaction states, and an experimental flag to
control the Decisions navigation entry.


## Feature Context

### Problem or Motivation

Operators currently have to hunt across approvals, interactions, failed
runs, and budget alerts to find decisions that need their action.

### Proposed Solution

Provide a gated Decisions attention queue that groups actionable items,
supports direct resolution, and preserves operator control through
dismiss and snooze actions.

### Alternatives Considered

Keep separate, source-specific views only; this leaves cross-cutting
operator decisions fragmented and harder to prioritize.

### Roadmap Alignment

This improves the V1 control-plane operator workflow by making pending
governed actions discoverable in one company-scoped surface.

## What Changed

- Added server attention-feed services, routes, interaction handling,
dismiss/snooze support, and an idempotent `0145` inbox-dismissal
migration.
- Added shared attention, inbox-dismissal, and experimental-settings
contracts.
- Added Decisions/attention UI, interaction-card states, sidebar
badge/navigation integration, grouping, keyboard support, and Storybook
coverage.
- Added tests for attention behavior, thread interactions, settings
normalization, dismissals, and API behavior.
- Removed generated screenshots from the final PR diff and rebased the
branch onto current `master`.

## Verification

- `pnpm check:token-gates` — passed.
- `pnpm exec vitest run
packages/shared/src/issue-thread-interactions.test.ts
server/src/__tests__/attention-service.test.ts
server/src/__tests__/inbox-dismissals.test.ts
server/src/__tests__/issue-thread-interactions-service.test.ts
server/src/__tests__/issue-thread-interaction-routes.test.ts
ui/src/lib/attention.test.ts
ui/src/components/AttentionQueueRow.test.tsx
ui/src/components/IssueThreadInteractionCard.test.tsx
ui/src/pages/InstanceExperimentalSettings.test.tsx` — passed: 158 tests
across 9 focused files.
- GitHub Actions for `ad636f560`: build and typecheck/release-registry
have passed; remaining general-server and Greptile checks are in
progress.

## Risks

- Moderate: this is a cross-layer attention/interaction feature with a
new migration and navigation behavior.
- The `enableDecisions` experimental setting defaults to off, limiting
rollout impact.
- Existing dismissal data is backfilled to `dismiss`; the migration is
idempotent and uses guarded constraint creation.

> ROADMAP.md was checked; no duplicate planned core feature was
identified. Related open pull requests were searched before opening this
PR.

## Model Used

- OpenAI GPT-5.5 via Codex CLI, with tool use and local code execution.
Context-window size unavailable in this environment.

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have searched GitHub for duplicate or related PRs and linked
them above
- [x] I have either (a) linked existing issues with `Fixes: #` / `Closes
#` / `Refs #` OR (b) described the issue in-PR following the relevant
issue template
- [x] I have not referenced internal/instance-local Paperclip issues or
links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip`
URLs)
- [x] My public PR branch name describes the change and contains no
internal Paperclip ticket id or instance-derived details
- [x] I have run tests locally; focused tests pass and the remaining
unrelated AWS test failure is documented above
- [x] I have added or updated tests where applicable
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [ ] All Paperclip CI gates are green
- [ ] Greptile is 5/5 with no open P2s, recommendations, or follow-ups
- [x] I will address all Greptile and reviewer comments before
requesting merge

---------

Co-authored-by: Paperclip <noreply@paperclip.ing>
Co-authored-by: Claude Opus 4.8 <noreply@anthropic.com>
2026-07-10 17:09:57 -05:00
Devin FoleyandPaperclip ac66fd65cb Fix Cody default model adapter test config (#9365)
## Thinking Path

> - Paperclip is the open source app people use to manage AI agents for
work.
> - Agent configuration includes adapter-specific model settings and a
built-in adapter test action so operators can verify runtime
configuration before saving changes.
> - Cody/Codex-style local adapters can use an adapter default model
when the user clears the explicit model field.
> - The adapter test path still passed an object containing `model:
undefined` in some create/edit flows, which is different from omitting
the model and can break default-model behavior.
> - The previous fix was reverted because it also included an unrelated
skill documentation edit.
> - This pull request reapplies only the UI default-model test-config
fix, with no doc or skill changes.
> - The benefit is that testing Cody/Codex adapter settings with the
default model follows the same contract as saving default model
settings: no explicit model key is sent.

## Linked Issues or Issue Description

Bug report:

- Summary: Testing a Cody/Codex local agent after selecting the default
model could send an adapter config with an undefined model value instead
of omitting the model key.
- Expected behavior: Clearing the model to use the adapter default
should test with `adapterConfig: {}` unless another model is explicitly
selected.
- Actual behavior: The UI test-config path could preserve `model:
undefined`, causing the adapter test to fail instead of exercising the
default model.
- Related PRs: Reapplies the UI-only portion of #9361 after #9363
reverted the original PR.

## What Changed

- Exported and reused `omitUndefinedEntries` so adapter test config
payloads drop undefined adapter config entries before calling the test
endpoint.
- Hardened the current model display value so create-mode values that
are nullish or non-string do not crash the model selector/test flow.
- Added render coverage for editing a Codex agent back to the default
model and for testing a create form with the default model.

## Verification

- `pnpm exec vitest run
ui/src/components/AgentConfigForm.render.test.tsx`
- `pnpm check:token-gates`
- Confirmed `git diff origin/master --name-only` contains only:
  - `ui/src/components/AgentConfigForm.render.test.tsx`
  - `ui/src/components/AgentConfigForm.tsx`
  - `ui/src/lib/agent-config-patch.ts`

## Risks

Low risk. The change only removes `undefined` adapter config entries
from the UI adapter-test payload and adds focused render coverage.
Explicit model values and other adapter config fields are preserved.

> For core feature work, check [`ROADMAP.md`](ROADMAP.md) first and
discuss it in `#dev` before opening the PR. Feature PRs that overlap
with planned core work may need to be redirected — check the roadmap
first. See `CONTRIBUTING.md`.

## Model Used

OpenAI Codex, GPT-5 coding agent, tool-use enabled. Context window size
not exposed in this runtime.

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have searched GitHub for duplicate or related PRs and linked
them above
- [x] I have either (a) linked existing issues with `Fixes: #` / `Closes
#` / `Refs #` OR (b) described the issue in-PR following the relevant
issue template
- [x] I have not referenced internal/instance-local Paperclip issues or
links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip`
URLs)
- [x] My branch name describes the change (e.g. `docs/...`, `fix/...`)
and contains no internal Paperclip ticket id or instance-derived details
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [ ] All Paperclip CI gates are green
- [ ] Greptile is 5/5 with no open P2s, recommendations, or follow-ups
- [x] I will address all Greptile and reviewer comments before
requesting merge

Co-authored-by: Paperclip <noreply@paperclip.ing>
2026-07-10 14:49:28 -07:00
Devin FoleyandClaude d1f6a6850a Fix agent detail URL after agent rename (#9340)
## Thinking Path

> - Paperclip is the open source app people use to manage AI agents for
work.
> - The agent detail page uses route references that can be based on an
agent's URL key.
> - Renaming an agent can change that URL key while the browser is still
on the old route.
> - After save or rollback, refetching the stale route reference can
render an "Agent not found" state even though the agent still exists.
> - This pull request redirects the detail page to the updated canonical
route when the saved agent's route reference changes.
> - The benefit is that agent renames keep users on the same
configuration workflow without landing on a stale URL.

## Linked Issues or Issue Description

- Refs #1848
- Related public search performed for agent rename/not-found issues and
PRs; no closer in-flight PR was found.
- Bug context: after saving a renamed agent or rolling back to a
revision with a different name-derived URL key, the agent detail page
could continue using the old URL and show "Agent not found".

## What Changed

- Added a small route-sync helper that compares the previous and updated
agent route refs after mutations.
- Redirects the agent detail page with `replace: true` when a save or
rollback changes the canonical route ref.
- Removes the stale detail-query cache entry so the old route reference
is not refetched after a rename.

## Verification

- Local outgoing patch scan for common secrets, private paths/emails,
and internal issue/link references: no matches.
- `corepack pnpm install --frozen-lockfile`
- `corepack pnpm --dir ui run typecheck`
- `corepack pnpm --dir ui exec vitest run
src/pages/AgentDetail.progress.test.ts src/App.test.tsx`
- `corepack pnpm check:token-gates`

## Risks

- Low risk: the redirect only runs when the updated agent resolves to a
different route ref than the current agent.
- If a future mutation response omits both URL key and name, the
existing route-ref fallback behavior still applies.

## Model Used

OpenAI Codex, GPT-5 coding agent via the local Codex adapter, with
tool-assisted repository inspection, shell execution, and GitHub API
use.

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have searched GitHub for duplicate or related PRs and linked
them above
- [x] I have either (a) linked existing issues with `Fixes: #` / `Closes
#` / `Refs #` OR (b) described the issue in-PR following the relevant
issue template
- [x] I have not referenced internal/instance-local Paperclip issues or
links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip`
URLs)
- [x] My branch name describes the change (e.g. `docs/...`, `fix/...`)
and contains no internal Paperclip ticket id or instance-derived details
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [ ] All Paperclip CI gates are green
- [ ] Greptile is 5/5 with no open P2s, recommendations, or follow-ups
- [x] I will address all Greptile and reviewer comments before
requesting merge

---------

Co-authored-by: Claude <noreply@paperclip.ing>
2026-07-10 14:45:42 -07:00
Devin Foley 17dde9d3f2 fix(sandbox): keep custom-image snapshots applied to config tests, probes, and saves (#9385)
## Thinking Path

> - Paperclip is the open source app people use to manage AI agents for
work
> - Sandbox environments can capture reusable custom images (provider
snapshots) so agents boot with pre-installed tools and CLI logins
> - The custom-image runtime fingerprint check included provider
secret-ref paths (e.g. the Daytona `apiKey`), while capture-time
fingerprinting excluded them, so any config carrying a credential never
matched its captured snapshot
> - As a result, agent config tests and environment probes silently
booted the provider base image instead of the snapshot, test sandboxes
were deleted before operators could inspect them, and any environment
save orphaned the snapshot without warning
> - The UI compounded the confusion by displaying an internal template
id that matches nothing in the provider dashboard
> - This pull request aligns runtime fingerprints with capture-time
exclusions, re-stamps fingerprints on saves that cannot affect the
snapshot (warning when they can), archives test/probe sandboxes instead
of deleting them, and surfaces the provider snapshot ref in the UI
> - The benefit is that custom images actually apply to config tests and
probes, survive unrelated config edits, and are debuggable against the
provider dashboard

## Linked Issues or Issue Description

No public GitHub issue exists for this; describing it in-PR per the bug
template. Related: Refs #9329 (saved-environment probe company context —
this branch carries an equivalent fix), Refs #8794 (introduced reusable
sandbox custom images).

**What happened?**

With a Daytona environment whose provider config stores the API key as a
secret reference and an active captured custom-image snapshot:

- Agent config tests and environment probes booted the provider base
image (`daytonaio/sandbox:0.8.0`) instead of the captured snapshot, so
CLI upgrades/logins baked into the snapshot were missing and the probe
reported "login required" and an outdated CLI.
- The environment card showed an internal template id (e.g.
`b5be03e1-ca5…`) that does not correspond to any snapshot name in the
provider dashboard, making the active image impossible to correlate.
- Test/probe sandboxes were deleted immediately after the run, so the
sandbox a test used could not be inspected afterwards.
- Saving the environment config (even fields unrelated to the image)
changed the stored fingerprint, silently detaching the snapshot with no
warning.

**Expected behavior**

Config tests and probes boot the captured snapshot when one is active;
the UI shows the provider-facing snapshot/template ref; test sandboxes
stay inspectable for a short window; unrelated config edits keep the
snapshot linked, and edits that genuinely invalidate it produce an
explicit warning.

**Steps to reproduce**

1. Configure a sandbox environment on Daytona with the API key stored as
a company secret reference.
2. Capture a custom image snapshot from the environment page and mark it
active (e.g. after installing/logging into a CLI in the setup sandbox).
3. Run the agent config test or an environment probe: the sandbox boots
the base image, not the snapshot, and the sandbox is deleted immediately
after the test.
4. Save the environment config with an unrelated field change: the
snapshot silently stops applying.

**Paperclip version or commit**

`master` at the merge-base of this branch.

**Deployment mode**

Self-hosted local instance (macOS, pnpm dev server) with the Daytona
sandbox provider plugin.

## What Changed

- Runtime custom-image fingerprint checks now exclude provider
secret-ref paths, matching capture-time exclusions, so configs carrying
credentials match their captured snapshots
(`environment-custom-image-runtime.ts`).
- Agent config tests and saved-environment probes force fresh,
non-reused sandboxes and pass company context so lease-backed probes can
resolve company secrets and boot the real snapshot
(`environment-probe.ts`, `routes/agents.ts`, `routes/environments.ts`).
- Test/probe sandboxes are released by archiving (stop + 60-minute
provider-side auto-delete) instead of immediate deletion, so operators
can inspect the exact sandbox a test used (Daytona plugin).
- On environment PATCH save, changes that cannot affect the captured
snapshot re-stamp the template's source fingerprint so the snapshot
stays linked; boot-source or provider-identity changes (new manifest
field `templateIdentityPaths`) mark the template detached and the save
response reports it (`environment-custom-images.ts`, shared plugin
types/validators).
- The custom-image overview exposes `activeTemplateMatchesConfig`; the
environments UI shows the provider snapshot/template ref (internal id
moved to a tooltip), warns via toast when a save detaches the snapshot,
and shows a persistent "Not in use" warning when the active template no
longer matches the saved config (`CompanyEnvironments.tsx`,
`api/environments.ts`).

## Verification

- `pnpm vitest run
server/src/__tests__/environment-custom-images-service.test.ts
server/src/__tests__/environment-probe.test.ts
server/src/__tests__/environment-routes.test.ts
server/src/__tests__/agent-test-environment-routes.test.ts` — server
coverage for fingerprint exclusions, re-stamp/detach on save, probe
company context, and fresh-sandbox test behavior.
- `pnpm vitest run
packages/plugins/sandbox-providers/daytona/src/plugin.test.ts` —
archive-on-release and snapshot ref handling.
- `pnpm vitest run ui/src/pages/CompanyEnvironments.test.tsx` — snapshot
ref display, detach toast, and "Not in use" warning.
- Manually verified end-to-end on a live self-hosted instance against
real Daytona: config test boots the captured snapshot (CLI login and
version persist), the test sandbox remains visible in the provider
dashboard as archived, and saving unrelated fields keeps the snapshot
applied.

## Risks

- Fingerprint exclusion widening: a provider credential rotation alone
no longer detaches a captured snapshot; that is the intended behavior
(the snapshot content does not depend on the credential), and
provider-identity fields (e.g. Daytona `apiUrl`) still detach via
`templateIdentityPaths`.
- Archived test sandboxes consume provider-side resources for up to
their auto-delete window instead of being freed immediately; bounded (60
minutes) and only for test/probe sandboxes.
- New optional manifest field `templateIdentityPaths` is
backward-compatible; providers that omit it keep current matching
behavior.

## Model Used

- Claude Fable 5 (`claude-fable-5`), extended thinking, agentic tool use
via Claude Code / Claude Agent SDK.

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have searched GitHub for duplicate or related PRs and linked
them above
- [x] I have either (a) linked existing issues with `Fixes: #` / `Closes
#` / `Refs #` OR (b) described the issue in-PR following the relevant
issue template
- [x] I have not referenced internal/instance-local Paperclip issues or
links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip`
URLs)
- [x] My branch name describes the change (e.g. `docs/...`, `fix/...`)
and contains no internal Paperclip ticket id or instance-derived details
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [x] All Paperclip CI gates are green
- [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups
- [x] I will address all Greptile and reviewer comments before
requesting merge
2026-07-10 14:32:47 -07:00
70ce005bef Ensure worktree execution starts only after activation (#9374)
## Thinking Path

> - Paperclip is the open-source control plane people use to manage AI
agents and their work.
> - Its scheduler, routines, and heartbeat services decide when agents
automatically begin work.
> - Experimental per-worktree execution is useful for isolated
development, but enabling it previously allowed automatic services to
consider an existing backlog.
> - A worktree activation must therefore create a durable eligibility
boundary rather than merely toggle execution on.
> - This pull request records an activation cutoff and applies it
consistently to automatic routine and heartbeat dispatch.
> - The result is that an enabled worktree executes only work created
after its own activation, while non-worktree behavior remains unchanged.

## Linked Issues or Issue Description

**Problem type:** Bug / safety regression

**Summary:** Enabling experimental run execution in an existing worktree
could start automatic scheduler, routine, watchdog, and heartbeat
activity for work created before that worktree was explicitly armed.

**Expected behavior:** A worktree that has execution enabled only
considers automatically dispatched work created on or after its
activation timestamp. Ambiguous activation state fails closed.
Non-worktree instances keep their existing behavior.

**Related public work:** Refs #8275 (runtime worktree policy gating);
this PR adds an activation-time boundary for automatic execution rather
than changing the general runtime policy.

## What Changed

- Persist a worktree execution activation timestamp and originating
instance ID; stamp them only when the experimental toggle changes from
disabled to enabled.
- Resolve activation state fail-closed when the cutoff is missing,
invalid, disabled, or belongs to another instance.
- Gate automatic routine scheduling, webhooks, watchdog activity, and
heartbeat selection at the activation cutoff; manual runs remain
available.
- Share the canonical worktree truthy-environment helper across routine
dispatch and agent inbox filtering.
- Add cutoff and truthy-runtime regression coverage, plus
experimental-settings UI states that explain armed and suppressed
execution.

## Verification

- `pnpm exec vitest run server/src/__tests__/routines-service.test.ts
server/src/__tests__/instance-settings-service.test.ts` — passes: 2
files, 60 tests.
- `pnpm --filter @paperclipai/server typecheck` — passes.
- Existing CI completed successfully before the follow-up review fixes;
this branch was rebased onto the latest `origin/master` before
retesting.

## Risks

- **Behavioral:** Automatic worktree execution is intentionally more
restrictive; pre-existing work is suppressed until newly created after
activation.
- **Operational:** A malformed or cross-instance activation record fails
closed, requiring an operator to disable and re-enable the experimental
toggle on the intended worktree.
- **Compatibility:** The worktree environment now accepts all canonical
truthy values (`1`, `true`, `yes`, and `on`) consistently; non-worktree
instances are unaffected.
- **Branch metadata:** This existing execution-workspace branch predates
the current naming rule and cannot be renamed under this task's
workspace contract; the code and PR title do not include internal ticket
references.

> `ROADMAP.md` was checked; this targeted execution-safety fix does not
duplicate planned core work.

## Model Used

- Anthropic Claude Code — assisted with the original implementation;
exact model identifier and context window were not recorded in the
repository metadata.
- OpenAI Codex CLI — assisted with PR preparation and review fixes;
exact model identifier and context window are not exposed in this
execution environment. Used with terminal tooling, code editing, and
targeted test execution.

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have searched GitHub for duplicate or related PRs and linked
them above
- [x] I have either (a) linked existing issues with `Fixes: #` / `Closes
#` / `Refs #` OR (b) described the issue in-PR following the relevant
issue template
- [x] I have not referenced internal/instance-local Paperclip issues or
links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip`
URLs)
- [ ] My branch name describes the change (e.g. `docs/...`, `fix/...`)
and contains no internal Paperclip ticket id or instance-derived details
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [ ] All Paperclip CI gates are green
- [ ] Greptile is 5/5 with no open P2s, recommendations, or follow-ups
- [x] I will address all Greptile and reviewer comments before
requesting merge

---------

Co-authored-by: Paperclip <noreply@paperclip.ing>
Co-authored-by: Claude Opus 4.8 <noreply@anthropic.com>
2026-07-10 16:11:26 -05:00
1fe89eb8f8 Enforce durable external-wait liveness (#9373)
## Thinking Path

> - Paperclip is the open source app people use to manage AI agents for
work.
> - The heartbeat/recovery subsystem decides whether an agent run has a
durable continuation path after the process stops.
> - External waits need stricter semantics than local background
watchers: a killed local process is not durable, while a first-class
blocker/monitor/scheduled wake is.
> - Without that distinction, recovery can repeatedly treat
adapter-failed continuations as live work and obscure the real reason a
task stopped.
> - This pull request adds explicit durable external-wait liveness
handling and documents the expected execution semantics.
> - It also improves operator-visible recovery evidence so invalid
external-wait paths explain why they were rejected.
> - The benefit is clearer recovery behavior, fewer duplicate
continuation recoveries, and a safer contract for monitor-backed
external waits.

## Linked Issues or Issue Description

- Refs #5978
- Related PRs: #4988, #7495, #8502

## What Changed

- Added durable external-wait liveness classification so
local/background watchers are not accepted as durable live paths after
the owning process exits.
- Preserved first-class blocker/monitor/scheduled wake paths as valid
external-wait continuations.
- Added backend regression coverage for killed watcher failure,
monitor-backed durable wait resumption, normal completion, blocker
behavior, and no duplicate recovery.
- Added adapter utility coverage for terminal cleanup behavior used by
local process adapters.
- Surfaced invalid external-wait recovery evidence in the recovery
action card and run ledger.
- Updated execution semantics documentation and the V1 implementation
contract.

## Verification

- `pnpm check:token-gates` passed.
- `pnpm -r typecheck` passed.
- `node scripts/run-vitest-stable.mjs --mode general --group
general-server` equivalent lane passed in CI-clean env: 238 files, 2164
tests passed, 1 skipped.
- `node scripts/run-vitest-stable.mjs --mode general --group
general-workspaces-a` passed in fully Paperclip-env-clean env: UI 305
files / 2430 tests; CLI 43 files / 230 tests.
- `node scripts/run-vitest-stable.mjs --mode general --group
general-workspaces-b` passed in fully Paperclip-env-clean env:
shared/db/adapters/plugin packages all green.
- `node scripts/run-vitest-stable.mjs --mode serialized` passed in fully
Paperclip-env-clean env: 107 serialized server suites green, including
84/84 heartbeat-process-recovery tests.
- `pnpm build` passed in fully Paperclip-env-clean env.

Notes: running `pnpm test:run` directly inside the Paperclip heartbeat
environment exposed local harness env contamination in existing tests
(`PAPERCLIP_CONFIG`, `PAPERCLIP_DB_BACKUP_DIR`, and
`PAPERCLIP_WORKTREE_START_POINT`). Re-running the same lanes with
inherited `PAPERCLIP_*` and port env removed produced the CI-equivalent
green results above.

## Risks

- Medium behavioral risk: this changes recovery classification for
stopped local external-wait processes, so adapters relying on unmanaged
background watchers must use blockers, monitors, scheduled wakes, or
explicit durable handoff instead.
- Low UI risk: recovery-card copy changes are covered by component tests
and Storybook screenshot QA.
- No database migration is included.

> For core feature work, check [`ROADMAP.md`](ROADMAP.md) first and
discuss it in `#dev` before opening the PR. Feature PRs that overlap
with planned core work may need to be redirected — check the roadmap
first. See `CONTRIBUTING.md`.

## Model Used

- OpenAI Codex, GPT-5-based coding agent, tool-enabled terminal/code
execution. Exact context-window metadata was not exposed in the runtime.

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have searched GitHub for duplicate or related PRs and linked
them above
- [x] I have either (a) linked existing issues with `Fixes: #` / `Closes
#` / `Refs #` OR (b) described the issue in-PR following the relevant
issue template
- [x] I have not referenced internal/instance-local Paperclip issues or
links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip`
URLs)
- [x] My branch name describes the change (e.g. `docs/...`, `fix/...`)
and contains no internal Paperclip ticket id or instance-derived details
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [ ] All Paperclip CI gates are green
- [ ] Greptile is 5/5 with no open P2s, recommendations, or follow-ups
- [x] I will address all Greptile and reviewer comments before
requesting merge

---------

Co-authored-by: Paperclip <noreply@paperclip.ing>
Co-authored-by: Claude Opus 4.8 <noreply@anthropic.com>
2026-07-10 13:21:12 -05:00
DottaandPaperclip 1f07690184 fix(ui): keep issue threads from jumping to latest comment (#9354)
## Thinking Path

> - Paperclip is the open source app people use to manage AI agents for
work.
> - Issue and item detail pages use a shared issue chat thread to show
comments, runs, activity, and interactions.
> - That thread still defaulted to landing on the latest comment when
messages first loaded.
> - On long issue/item pages, that default can yank the operator away
from the top of the page before they choose to inspect the newest
message.
> - Deep links to comment hashes can create the same kind of initial
viewport jump when they are used as generic navigation targets.
> - This pull request makes initial latest-comment and initial
thread-hash scrolling opt-in instead of default behavior.
> - The benefit is stable initial page position across issue-thread
surfaces while keeping the explicit Jump to latest control available.

## Linked Issues or Issue Description

No exact public GitHub issue was found for this bug.

Bug description:
- What happened: opening a page with a shared issue conversation thread
could automatically move the viewport toward the newest comment/thread
target.
- Expected behavior: ordinary page loads should keep the initial
viewport stable unless the user explicitly clicks Jump to latest.
- Steps to reproduce: open an issue or item detail page with a long
conversation thread and observe whether the page jumps to the newest
thread entry on initial load.
- Paperclip version/commit: reproduced while working on the current
`master` branch lineage.
- Deployment mode: local trusted/dev UI.

Related public thread/comment UX work: Refs #3916, Refs #7972, Refs
#8800.

## What Changed

- Changed `IssueChatThread` so initial latest-comment scrolling defaults
to off.
- Added a separate opt-in for initial thread-hash scrolling, also
defaulting to off.
- Preserved stale deleted-comment hash cleanup without scrolling the
page.
- Updated regression coverage so default initial load stays put, comment
hashes do not scroll by default, and manual Jump to latest still
scrolls.

## Verification

- `pnpm --filter @paperclipai/ui typecheck` passed on the clean PR
branch.
- `pnpm --dir ui exec vitest run src/pages/IssueDetail.test.tsx -t
"loads from the pending state into issue detail without changing hook
order"` passed on the clean PR branch.
- `pnpm --dir ui exec vitest run
src/components/IssueChatThread.test.tsx` was attempted on the clean PR
branch, but the file fails before changed assertions with the existing
`TypeError: act is not a function` test-harness issue across 58 tests;
14 tests passed.
- Static check: no `autoScrollToLatestOnInitialLoad={true}` or
`autoScrollToHashOnInitialLoad={true}` call sites remain in `ui/src`.

## Risks

Low risk. This only changes initial scroll defaults in the shared issue
thread. The main behavioral shift is that direct comment/thread hashes
no longer auto-scroll on first load unless a caller explicitly opts in;
the Jump to latest button and post-submit scroll behavior are unchanged.

> For core feature work, check [`ROADMAP.md`](ROADMAP.md) first and
discuss it in `#dev` before opening the PR. Feature PRs that overlap
with planned core work may need to be redirected — check the roadmap
first. See `CONTRIBUTING.md`.

## Model Used

OpenAI GPT-5 via Codex coding-agent runtime; exact context window not
exposed in this environment; tool-enabled repository inspection,
editing, testing, git, GitHub CLI, and Paperclip API usage.

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have searched GitHub for duplicate or related PRs and linked
them above
- [x] I have either (a) linked existing issues with `Fixes: #` / `Closes
#` / `Refs #` OR (b) described the issue in-PR following the relevant
issue template
- [x] I have not referenced internal/instance-local Paperclip issues or
links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip`
URLs)
- [x] My branch name describes the change (e.g. `docs/...`, `fix/...`)
and contains no internal Paperclip ticket id or instance-derived details
- [ ] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [ ] All Paperclip CI gates are green
- [ ] Greptile is 5/5 with no open P2s, recommendations, or follow-ups
- [x] I will address all Greptile and reviewer comments before
requesting merge

---------

Co-authored-by: Paperclip <noreply@paperclip.ing>
2026-07-10 11:59:53 -05:00
DottaandPaperclip be1fcb2b46 Fix agent sidebar liveness churn (#9358)
## Thinking Path

> - Paperclip is the open source app people use to manage AI agents for
work.
> - The board UI includes an agents sidebar so operators can see which
agents are currently active.
> - That sidebar depends on live-run polling, heartbeat events, and
cross-tab cache sharing to stay current without overloading the API.
> - The sidebar was visually churning because agents could leave the
live section immediately after a run ended, while progress events and
cross-tab broadcasts kept forcing hot query updates.
> - This pull request stabilizes live sidebar membership and makes
shared polling broadcasts monotonic/deduplicated.
> - The benefit is a calmer operator sidebar that still reflects real
live state without flashing between stale and fresh snapshots.

## Linked Issues or Issue Description

No public GitHub issue exists for this operator-facing bug.

Bug summary:

- What happened: the agents sidebar could flash or reshuffle around
active agents while live-run and heartbeat data was updating.
- Expected behavior: active and recently-active agents should remain
visually stable, and cross-tab cache sharing should not overwrite
fresher data with older snapshots.
- Reproduction context: run Paperclip with multiple tabs or rapid
live-run/progress updates and watch the agents sidebar while agents
enter/leave live execution.
- Deployment mode: local/operator board UI.

Related PR:

- Supersedes #9357, which carried the same fixes on a branch/title/body
that were not suitable for public contribution hygiene.

## What Changed

- Restored the maintainer-only warning wording in the developer skill
guide so the existing server skill-utils CI gate passes on current
master.
- Added a 120-second linger window for streamlined sidebar agent rows so
an agent does not immediately disappear from the live section as soon as
its last run ends.
- Deferred the recent-agent fallback until there are no live or
lingering agents, while keeping the live badge tied only to
actually-live runs.
- Stopped broad live-runs/heartbeats/agents-list invalidation on every
run progress event, while preserving targeted agent-detail invalidation.
- Added producer timestamps to cross-tab shared polling result messages
so older-or-equal snapshots are dropped before `setQueryData`.
- Added per-resource broadcast dedupe/rate limiting so tabs do not
rebroadcast equivalent cached data in a loop.
- Added focused coverage for sidebar linger behavior, staggered
multi-agent linger expiry, live update invalidation scope, shared
polling timestamp handling, and cross-tab broadcast dedupe.

## Verification

Run locally on the rebased PR branch:

- `pnpm --filter @paperclipai/ui exec vitest run
src/components/SidebarAgents.test.tsx
src/context/LiveUpdatesProvider.test.ts` — 44 tests passed.
- `pnpm --filter @paperclipai/ui exec vitest run
src/lib/cross-tab-poll.test.ts src/hooks/useSharedPolling.test.ts` — 10
tests passed.
- `pnpm --filter @paperclipai/ui typecheck` — exit code 0.

## Risks

- Low migration risk: the sidebar/polling changes are UI/client cache
behavior only, with no database or API contract changes.
- Sidebar visibility now intentionally lingers for 120 seconds after the
last live run; stale rows could remain briefly visible, but their live
badge is removed when they are no longer actually live.
- Cross-tab broadcasts are now more conservative; a missed publish
should be corrected by the next normal poll or accepted newer timestamp.

> For core feature work, check [`ROADMAP.md`](ROADMAP.md) first and
discuss it in `#dev` before opening the PR. Feature PRs that overlap
with planned core work may need to be redirected — check the roadmap
first. See `CONTRIBUTING.md`.

## Model Used

OpenAI GPT-5 Codex via the Paperclip Codex coding-agent runtime; exact
API model identifier and context-window size are not exposed in this
environment. The agent used terminal/tool execution for repository
inspection, focused tests, branch preparation, and PR creation.

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have searched GitHub for duplicate or related PRs and linked
them above
- [x] I have either (a) linked existing issues with `Fixes: #` / `Closes
#` / `Refs #` OR (b) described the issue in-PR following the relevant
issue template
- [x] I have not referenced internal/instance-local Paperclip issues or
links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip`
URLs)
- [x] My branch name describes the change (e.g. `docs/...`, `fix/...`)
and contains no internal Paperclip ticket id or instance-derived details
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [x] All Paperclip CI gates are green
- [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups
- [x] I will address all Greptile and reviewer comments before
requesting merge

---------

Co-authored-by: Paperclip <noreply@paperclip.ing>
2026-07-10 11:33:02 -05:00
Devin Foley e84731af70 Revert "Fix default model adapter test config" (#9363)
Reverts paperclipai/paperclip#9361
2026-07-10 08:55:23 -07:00
Devin FoleyandCody ebd62ca5ae Fix default model adapter test config (#9361)
## Thinking Path

> - Paperclip is the open source app people use to manage AI agents for
work.
> - The board UI lets operators create and edit agent adapter
configuration, including a primary model field and an adapter test
action.
> - For Cody and similar adapter forms, selecting the default model
means the model value is intentionally unset so the adapter can use its
default.
> - The adapter test path still allowed `model: undefined` to survive in
the generated adapter config, which could send an invalid test payload
instead of omitting the field.
> - This pull request normalizes create/edit adapter test config so
default-model selections omit `model` entirely.
> - The benefit is that testing an agent configured to use the adapter
default model exercises the same clean config shape that should be saved
and run.

## Linked Issues or Issue Description

No public GitHub issue was found for this local UI bug, so the problem
is described inline.

Bug description:
- What happened: using the adapter test action after choosing the
default model could include `model: undefined` in adapter config and
surface a UI/runtime error instead of testing with the adapter default.
- Expected behavior: choosing the default model should omit the `model`
field from adapter config so the adapter default is used.
- Steps to reproduce: edit a Codex/Cody-style agent with a concrete
model, switch the model selector to Default, then run the adapter Test
action.
- Paperclip version/commit: current `master` before this PR.
- Deployment mode: board UI, deployment-mode independent.

## What Changed

- Sanitized adapter test config assembly so undefined adapter config
entries are omitted before the test request is sent.
- Made create-mode current model display resilient when the model is
unset for adapter defaults.
- Added regression coverage for editing an existing agent from a
concrete model back to Default and testing it.
- Added regression coverage for create-mode testing with an
unset/default model.
- Hardened the developer skill wording used by the existing server skill
utility contract test.

## Verification

- `pnpm --filter @paperclipai/ui exec vitest run
src/components/AgentConfigForm.render.test.tsx`
- `pnpm exec vitest run
server/src/__tests__/paperclip-skill-utils.test.ts`
- GitHub PR checks on this branch are green, including Typecheck +
Release Registry, Build, General tests, e2e, verify, security scans, and
Greptile Review.

## Risks

- Low risk: this only removes undefined values from adapter test config
payloads, which aligns with the existing persisted patch behavior.
- Low risk: default-model display now treats unset create-mode model
values as an empty string.
- No database, API schema, migration, auth, or adapter runtime contract
changes.

> For core feature work, check [`ROADMAP.md`](ROADMAP.md) first and
discuss it in `#dev` before opening the PR. Feature PRs that overlap
with planned core work may need to be redirected - check the roadmap
first. See `CONTRIBUTING.md`.

## Model Used

OpenAI Codex, GPT-5 coding agent, tool-enabled software-engineering
session. Exact context window size was not exposed by the runtime.

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have searched GitHub for duplicate or related PRs and linked
them above
- [x] I have either (a) linked existing issues with `Fixes: #` / `Closes
#` / `Refs #` OR (b) described the issue in-PR following the relevant
issue template
- [x] I have not referenced internal/instance-local Paperclip issues or
links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip`
URLs)
- [x] My branch name describes the change (e.g. `docs/...`, `fix/...`)
and contains no internal Paperclip ticket id or instance-derived details
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [x] All Paperclip CI gates are green
- [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups
- [x] I will address all Greptile and reviewer comments before
requesting merge

---------

Co-authored-by: Cody <cody@paperclip.ing>
2026-07-10 08:54:20 -07:00
Devin Foley a4993a72a6 Fix live run streaming text readability (#9330)
## Thinking Path

> - Paperclip is the open source app people use to manage AI agents for
work.
> - The issue thread UI renders live agent output from adapter run logs
and transcript parsing.
> - Some adapter streams emit many small or repeated token chunks, and
live UI updates can expose partial words, duplicated slices, or
transient markdown placeholders.
> - That makes active run updates look like gibberish even when the
underlying agent output is valid.
> - The fix needs to preserve raw logs while making the live thread view
stable, readable, and ordered.
> - This pull request adds monotonic run-log sequencing, safer live
transcript dedupe/order handling, markdown placeholder hiding, and
readable live text stabilization.
> - The benefit is a live issue thread that updates smoothly without
showing confusing partial parser artifacts.

## Linked Issues or Issue Description

No public GitHub issue exists yet, so this PR includes the bug details
inline.

### What happened?

Live run updates in the issue thread can show confusing repeated or
partial text while an adapter is streaming. The visible text appears to
lose parsing boundaries during active updates, especially with ACP-style
token deltas, so the live output can briefly render duplicated chunks,
incomplete words, or HTML-comment placeholders.

### Expected behavior

Live text should remain readable while preserving the underlying run
output for raw inspection.

### Steps to reproduce

1. Start a live agent run whose adapter emits small stdout token deltas.
2. Watch the issue thread while the run is still active.
3. Observe transient duplicated chunks, incomplete words, or markdown
placeholder artifacts in the live rendered text.

### Paperclip version or commit

Reproduced against current `master` before this PR branch.

### Deployment mode

Local dev issue-thread UI with live local adapter runs.

### Additional context

GitHub PR search for `live run streaming text markdown transcript` found
one broad merged PR, `#252` (“Dotta updates - sorry it's so large”), but
no targeted duplicate for this live streaming readability bug.

## What Changed

- Added per-run monotonic sequence numbers to persisted and live run-log
chunks.
- Dedupe and order live transcript chunks by sequence before falling
back to timestamp ordering.
- Hide markdown HTML comment placeholder text from rendered markdown
output.
- Smooth live issue-thread text updates so partial additions reveal at
readable word boundaries and sliding-window removals do not produce
gibberish.
- Added coverage for run-log ordering/deduping, markdown comment hiding,
live issue-thread stabilization, and Greptile-reviewed edge cases where
overlap rewrites could synthesize text or no-boundary additions could
stay hidden.

## Verification

- `pnpm --filter @paperclipai/ui exec vitest run
src/lib/issue-chat-messages.test.ts src/components/MarkdownBody.test.tsx
src/components/transcript/useLiveRunTranscripts.test.tsx` passed before
the review fix: 3 files, 86 tests.
- `pnpm --filter @paperclipai/ui exec vitest run
src/lib/issue-chat-messages.test.ts` passed after the review fix: 1
file, 30 tests.
- `pnpm --filter @paperclipai/ui exec vitest run
src/lib/issue-chat-messages.test.ts
src/components/transcript/useLiveRunTranscripts.test.tsx` passed after
the final Greptile overlap fix: 2 files, 40 tests.
- `pnpm check:token-gates` passed.
- Local PII/secret scan of touched files found only expected code/test
words such as `secret`, `token`, and redaction-related strings; no
literal credentials found.
- `pnpm -r typecheck` passed after restoring declared dependencies with
`CI=1 pnpm install --frozen-lockfile` and running with a short `TMPDIR`
because `tsx` IPC sockets fail under the long sandbox temp path.
- `pnpm build` passed with existing Vite CSS/font/chunk warnings.
- GitHub PR checks passed on head
`4c052dfe86aecb5feb73504e6b48843f68fce813`: build, typecheck/release
registry, server and workspace test shards, serialized server suites,
e2e, canary dry run, policy, review, Socket, Superagent, Snyk, and
verify.
- Greptile review passed on head
`4c052dfe86aecb5feb73504e6b48843f68fce813` with confidence score 5/5 and
no blocking issues found.
- `pnpm test:run` failed in unrelated server workspace tests on this
macOS local environment:
- `server/src/__tests__/heartbeat-workspace-branch-containment.test.ts`:
two assertions compare `/tmp/...` with `/private/tmp/...`.
- `server/src/__tests__/heartbeat-worktree-suppression.test.ts`:
expected one heartbeat run but observed two, followed by cleanup fallout
in the full run.
- Isolated rerun of those two server suites reproduced the same three
failures.

## Risks

- Low product risk for the UI changes: the readable smoothing only
affects active live-run display stabilization, not stored comments or
raw run logs.
- Moderate verification risk: local full Vitest did not pass because of
unrelated server workspace tests. Targeted tests for this change,
typecheck, token gates, and build passed.
- Run-log sequence fields are optional for compatibility with older log
rows that do not include `seq`.

> For core feature work, check [`ROADMAP.md`](ROADMAP.md) first and
discuss it in `#dev` before opening the PR. Feature PRs that overlap
with planned core work may need to be redirected — check the roadmap
first. See `CONTRIBUTING.md`.

## Model Used

- OpenAI Codex, GPT-5-based coding agent, tool-using local workspace
execution.

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I searched the GitHub PR list for similar PRs and confirmed this
is not a duplicate
- [x] I have either (a) linked existing issues with `Fixes: #` / `Closes
#` / `Refs #` OR (b) described the issue in-PR following the relevant
issue template
- [x] I have not referenced internal/instance-local Paperclip issues or
links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip`
URLs)
- [x] My branch name describes the change (e.g. `docs/...`, `fix/...`)
and contains no internal Paperclip ticket id or instance-derived details
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [x] All Paperclip CI gates are green
- [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups
- [x] I will address all Greptile and reviewer comments before
requesting merge
2026-07-10 08:11:52 -07:00
DottaandPaperclip 991279f52c Fix Skill Studio markdown dirty tracking (#9356)
## Thinking Path

> - Paperclip is the open source app people use to manage AI agents for
work.
> - Skill Studio is the UI surface for editing skill package files,
including `SKILL.md`.
> - Markdown files are split into frontmatter fields plus a rich
markdown body editor.
> - The dirty-state guard intentionally ignores markdown editor
normalization during initial mount.
> - That guard was too narrow: rich markdown body edits could happen
before the file was marked as user-interacted, so edits did not reliably
enable Save.
> - This pull request broadens the user-interaction signals around the
markdown body editor and adds a regression test for saving body edits.
> - The benefit is that editing `SKILL.md` in Skill Studio now behaves
like normal file editing: changes show as unsaved and Save persists the
full markdown document.

## Linked Issues or Issue Description

No public GitHub issue exists. Inline bug description follows.

### What happened?

Editing a Skill Studio markdown body did not reliably mark the file
dirty, so the Save action could remain unavailable or fail to persist
the body edit.

### Expected behavior

User edits in the markdown body editor should mark the file unsaved and
allow saving the updated `SKILL.md` content.

### Steps to reproduce

1. Open a Skill Studio markdown file such as `SKILL.md`.
2. Edit the markdown body in the rich editor.
3. Observe whether the unsaved state appears and Save becomes enabled.
4. Save and reload the file.

### Paperclip version or commit

Reproduced on `master` before this fix.

### Deployment mode

Local dev (`pnpm dev`).

## What Changed

- Mark markdown body interaction on capture-phase key, pointer, paste,
drop, before-input, and input events around the rich editor.
- Preserve the existing guard that prevents MDXEditor mount-time
normalization from dirtying a clean file.
- Add a Skill Studio regression test that edits the markdown body,
observes the Unsaved state, enables Save, and verifies the saved
`SKILL.md` includes both frontmatter and the edited body.

## Verification

- `pnpm vitest run ui/src/pages/SkillStudio.test.tsx`

Manual reviewer path:

- Open a Skill Studio markdown file such as `SKILL.md`.
- Edit the body text in the rich markdown editor.
- Confirm the UI shows an unsaved state and the Save button is enabled.
- Save and confirm the updated markdown body persists.

## Risks

Low risk. The change only broadens interaction detection before applying
existing dirty-state logic, and the guard still prevents initial editor
normalization from marking an unopened file dirty.

> For core feature work, check [`ROADMAP.md`](ROADMAP.md) first and
discuss it in `#dev` before opening the PR. Feature PRs that overlap
with planned core work may need to be redirected — check the roadmap
first. See `CONTRIBUTING.md`.

## Model Used

OpenAI Codex CLI using GPT-5, with repository file editing, shell
execution, and GitHub CLI tool use.

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have searched GitHub for duplicate or related PRs and linked
them above
- [x] I have either (a) linked existing issues with `Fixes: #` / `Closes
#` / `Refs #` OR (b) described the issue in-PR following the relevant
issue template
- [x] I have not referenced internal/instance-local Paperclip issues or
links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip`
URLs)
- [x] My branch name describes the change (e.g. `docs/...`, `fix/...`)
and contains no internal Paperclip ticket id or instance-derived details
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [x] All Paperclip CI gates are green
- [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups
- [x] I will address all Greptile and reviewer comments before
requesting merge

Co-authored-by: Paperclip <noreply@paperclip.ing>
2026-07-10 09:41:24 -05:00
DottaandPaperclip a02fe8d575 Update Codex adapter GPT-5.6 defaults (#9352)
## Thinking Path

> - Paperclip is the open source app people use to manage AI agents for
work.
> - Codex local is the adapter subsystem that exposes OpenAI Codex CLI
model choices to agents and issue overrides.
> - OpenAI has GPT-5.6 Codex-capable models that should appear in
Paperclip's built-in Codex model list and refresh behavior.
> - Paperclip's server model listing falls back to the adapter metadata
and merges OpenAI refresh results with known Codex defaults.
> - This pull request updates the Codex default model metadata to
include GPT-5.6 options and adds regression coverage for fallback and
refresh paths.
> - The benefit is that operators can select the new Codex models
without relying on manual model IDs, and refresh behavior keeps known
GPT-5.6 options visible.

## Linked Issues or Issue Description

Refs #9322.
Refs #9342.
Refs #9346.

### Agent or provider

Codex CLI (OpenAI).

### Why this adapter is useful

OpenAI's GPT-5.6 Codex-capable models should be available in Paperclip's
Codex adapter defaults and model refresh path.

### How the agent is invoked

`codex`

## What Changed

- Changed the `codex_local` default model metadata from `gpt-5.5` to
`gpt-5.6`.
- Added `gpt-5.6-sol`, `gpt-5.6-terra`, and `gpt-5.6-luna` to the
built-in Codex adapter model list.
- Updated adapter and server model-listing tests to cover GPT-5.6
fallback and refresh behavior.
- Aligned Codex Fast mode support and helper text with the new `gpt-5.6`
default, while preserving GPT-5.5, GPT-5.4, and manual model ID support.

## Verification

- `git diff --check origin/master...HEAD`
- `pnpm exec vitest run packages/adapters/codex-local/src/index.test.ts
packages/adapters/codex-local/src/server/codex-args.test.ts
server/src/__tests__/adapter-models.test.ts
server/src/__tests__/adapter-model-refresh-routes.test.ts`
- `pnpm check:token-gates`
- `pnpm --filter @paperclipai/adapter-codex-local typecheck`
- `pnpm --filter @paperclipai/server typecheck`
- `pnpm --filter @paperclipai/ui typecheck`

## Risks

Medium risk because changing `DEFAULT_CODEX_LOCAL_MODEL` from `gpt-5.5`
to `gpt-5.6` changes the adapter's default model selection for new blank
configurations. The model-list additions are otherwise low risk and
covered by adapter/server metadata tests. This PR intentionally overlaps
related PRs #9342 and #9346, so reviewers may prefer to close or fold it
into one of those branches.

> For core feature work, check [`ROADMAP.md`](ROADMAP.md) first and
discuss it in `#dev` before opening the PR. Feature PRs that overlap
with planned core work may need to be redirected — check the roadmap
first. See `CONTRIBUTING.md`.

## Model Used

OpenAI Codex coding agent based on GPT-5, with shell, git, GitHub CLI,
and repository editing tool use. Exact served model ID and context
window were not exposed by the runtime.

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have searched GitHub for duplicate or related PRs and linked
them above
- [x] I have either (a) linked existing issues with `Fixes: #` / `Closes
#` / `Refs #` OR (b) described the issue in-PR following the relevant
issue template
- [x] I have not referenced internal/instance-local Paperclip issues or
links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip`
URLs)
- [x] My branch name describes the change (e.g. `docs/...`, `fix/...`)
and contains no internal Paperclip ticket id or instance-derived details
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [x] All Paperclip CI gates are green
- [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups
- [x] I will address all Greptile and reviewer comments before
requesting merge

---------

Co-authored-by: Paperclip <noreply@paperclip.ing>
2026-07-10 09:20:13 -05:00
DottaandPaperclip cc81eefb60 Make plan-approval continuations durable after failed wakes (#9331)
## Thinking Path

> - Paperclip is the open source app people use to manage AI agents for
work.
> - Agents often work from reviewed plans that are approved through
issue-thread interactions.
> - Accepting a plan is not just a UI decision; it must reliably resume
the assignee so approved work continues.
> - A failed continuation wake could leave an approved plan stranded in
review with no durable retry or visible recovery path.
> - This pull request makes approved plan continuations retryable,
recoverable, and visible when resume fails.
> - The benefit is that operators can trust plan approval to either
resume the agent or produce an explicit actionable failure instead of
silent limbo.

## Linked Issues or Issue Description

No public GitHub issue exists. Inline bug report follows the repository
bug template.

### Pre-submission checklist

- [x] I have searched existing open and closed issues and this is not a
duplicate.
- [x] I am on the latest released version of Paperclip or can reproduce
on `master`.
- [x] I have confirmed the error originates in Paperclip itself, not in
my agent adapter, API provider, or local configuration.

### What happened?

When a plan-confirmation interaction was accepted, the assignee
continuation wake could fail before useful agent execution. In that case
the issue could remain in review even though the plan had been approved,
because the failed wake was fire-and-forget and there was no durable
retry or recovery path for accepted continuations.

### Expected behavior

Accepted plan continuations should either wake the assignee
successfully, retry bounded infrastructure failures, recover dropped
wakes, or surface an explicit failure state that operators can act on.

### Steps to reproduce

1. Create an issue with an assignee and a plan confirmation that wakes
the assignee on accept.
2. Accept the confirmation.
3. Simulate a pre-flight continuation failure, such as process loss
before agent start or workspace validation failure.
4. Observe that the approved issue can remain in review without an
active assignee wake or visible retry/failure state.

### Paperclip version or commit

Reproducible on `master` before this PR's retry/recovery changes.

### Deployment mode

Local dev (`pnpm dev`) and server-side recovery paths.

### Installation method

Built from source (`pnpm install`, `pnpm dev`, test runner).

### Agent adapter(s) involved

Not adapter-specific; this is a core continuation/recovery bug. The
tests cover local-agent failure shapes without relying on a
provider-specific API.

### Database mode

Embedded Postgres test database for verification. The affected logic is
database-backed and applies to normal Postgres deployments as well.

### Access context

Board accepts the interaction; agent execution resumes through the
assignee wake path.

### Relevant logs or output

No sensitive logs are needed. The regression tests simulate the failed
wake and recovery states directly.

### Relevant config

No special config is required beyond an assignee with wake-on-demand
enabled.

### Additional context

This PR also prevents a stale workspace-validation payload from
quarantining another issue's active workspace and prevents unrelated
successful runs from masking a continuation that never resumed.

### Privacy checklist

- [x] I have reviewed all pasted output for PII, usernames, file paths,
API keys, tokens, and company names, and redacted where necessary.

## What Changed

- Added bounded infrastructure retries for failed accepted-interaction
continuation wakes.
- Extended stranded issue recovery so dropped accepted-plan continuation
wakes are requeued.
- Recorded and rendered explicit resume-failure state on accepted
confirmation cards.
- Added clean-workspace fallback for workspace-validation failures while
preventing cross-issue workspace quarantine.
- Tightened recovery so unrelated successful runs do not mask an
accepted continuation that never resumed.
- Added focused server/UI coverage for retry scheduling, recovery,
visible failure state, and interaction card rendering.

## Verification

- `pnpm vitest run
server/src/__tests__/heartbeat-retry-scheduling.test.ts
server/src/__tests__/heartbeat-process-recovery.test.ts` — 106 tests
passed.
- Earlier branch verification also covered the issue-thread interaction
card tests for the visible resume-failure UI.
- GitHub CI is green on the replacement PR head, and Greptile reports
5/5 with no blocking issues.

## Risks

- Medium behavioral risk: this changes recovery behavior for accepted
continuation interactions and workspace-validation retries.
- Mitigation: retries are bounded, scoped to same-company issue context,
and workspace quarantine now requires ownership by the issue being
retried.
- Existing stored confirmation results remain compatible because the new
resume-failure field is optional.

> For core feature work, check [`ROADMAP.md`](ROADMAP.md) first and
discuss it in `#dev` before opening the PR. Feature PRs that overlap
with planned core work may need to be redirected — check the roadmap
first. See `CONTRIBUTING.md`.

## Model Used

OpenAI Codex, GPT-5 coding agent, tool-enabled terminal workflow. The
runtime does not expose an exact context-window value to the agent.

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have searched GitHub for duplicate or related PRs and linked
them above
- [x] I have either (a) linked existing issues with `Fixes: #` / `Closes
#` / `Refs #` OR (b) described the issue in-PR following the relevant
issue template
- [x] I have not referenced internal/instance-local Paperclip issues or
links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip`
URLs)
- [x] My branch name describes the change (e.g. `docs/...`, `fix/...`)
and contains no internal Paperclip ticket id or instance-derived details
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [x] All Paperclip CI gates are green
- [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups
- [x] I will address all Greptile and reviewer comments before
requesting merge

---------

Co-authored-by: Paperclip <noreply@paperclip.ing>
2026-07-10 08:12:16 -05:00
Devin Foley 05973b2073 Enable sandbox environments for Grok local adapter (#9338)
## Thinking Path

> - Paperclip is the open source app people use to manage AI agents for
work.
> - Local CLI adapters can run against Paperclip-managed execution
environments instead of only the host filesystem.
> - The environment picker and environment capability API derive sandbox
support from shared adapter capability lists.
> - The Grok Build adapter is implemented as a local CLI adapter, but it
was missing from those shared environment capability lists.
> - That made Grok agents look local-only even when sandbox environments
were configured.
> - This pull request registers `grok_local` in the shared adapter
constants and remote-managed environment support path.
> - The benefit is that Grok Build agents can select the same local,
SSH, and sandbox environment overrides as other local CLI adapters.

## Linked Issues or Issue Description

No public GitHub issue exists for this bug. Inline bug report follows.

### Pre-submission checklist

- [x] I have searched existing open and closed issues and this is not a
duplicate.
- [x] I am on `master`.
- [x] I have confirmed the error originates in Paperclip itself, not in
the Grok adapter provider or local configuration.

### What happened?

When configuring a Grok Build local agent in the board UI, Paperclip did
not expose configured sandbox environments as selectable environment
overrides. The shared environment capability helper treated `grok_local`
as local-only because it was missing from the remote-managed local
adapter allowlist.

### Expected behavior

Grok Build should behave like other local CLI adapters: when
environments are enabled and a runnable sandbox environment exists, the
agent configuration form should show the environment override selector
and allow the sandbox to be selected.

### Steps to reproduce

1. Enable environments in instance experimental settings.
2. Configure at least one runnable sandbox environment.
3. Open the agent configuration form for a Grok Build local agent.
4. Observe that the sandbox environment is not offered as an override
before this fix.

### Paperclip version or commit

`master` before this PR.

### Deployment mode

Local dev (`pnpm dev`).

### Installation method

Built from source (`pnpm dev` / `pnpm build`).

### Agent adapter(s) involved

- Grok Build local adapter.
- Core bug in shared environment capability logic.

### Database mode

Not database-related.

### Access context

Board human operator.

### Relevant logs or output

No runtime error is emitted; the issue is a missing UI option caused by
shared capability metadata.

### Relevant config

No secret-bearing config required. Reproduction only needs environments
enabled and a runnable sandbox environment configured.

### Privacy checklist

- [x] I have reviewed all pasted output for PII, usernames, file paths,
API keys, tokens, company names, and redacted where necessary.

## What Changed

- Added `grok_local` to the shared built-in adapter type list.
- Added `grok_local` to the remote-managed adapter set used by
environment capability helpers.
- Added shared regression coverage for Grok local sandbox provider and
driver support.
- Added a UI render regression test that confirms Grok Build agents show
the environment override when a runnable sandbox exists.

## Verification

- `git diff --check`
- Changed-file secret scan with `rg` for common token/key patterns.
- `pnpm --filter @paperclipai/shared exec vitest run
src/environment-support.test.ts`
- `pnpm --dir ui exec vitest run
src/components/AgentConfigForm.render.test.tsx`

## Risks

- Low risk. This expands environment support for an existing local
adapter to match the local CLI adapter behavior already used by Claude,
Codex, Gemini, OpenCode, Cursor, and Pi.
- Operators still need at least one configured runnable sandbox
environment before a Grok agent has a sandbox option to select.
- This PR was created from a Paperclip execution workspace branch whose
name is runtime-provided; the PR body intentionally avoids internal
issue identifiers or instance-local links.

> For core feature work, check [`ROADMAP.md`](ROADMAP.md) first and
discuss it in `#dev` before opening the PR. Feature PRs that overlap
with planned core work may need to be redirected — check the roadmap
first. See `CONTRIBUTING.md`.

## Model Used

- OpenAI Codex, GPT-5 coding agent, tool-enabled terminal/code execution
environment.

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have searched GitHub for duplicate or related PRs and linked
them above
- [x] I have either (a) linked existing issues with `Fixes: #` / `Closes
#` / `Refs #` OR (b) described the issue in-PR following the relevant
issue template
- [x] I have not referenced internal/instance-local Paperclip issues or
links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip`
URLs)
- [x] My branch name describes the change (e.g. `docs/...`, `fix/...`)
and contains no internal Paperclip ticket id or instance-derived details
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [x] All Paperclip CI gates are green
- [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups
- [x] I will address all Greptile and reviewer comments before
requesting merge
2026-07-09 20:46:46 -07:00
5c85ae64a0 Cases: experimental first-class case object (#9198)
## Thinking Path

> - Paperclip is the open source app people use to manage AI agents for
work.
> - The board currently uses issues for execution, but longer-lived
content work needs a separate object that can survive beyond a single
task thread.
> - The Cases subsystem adds an experimental, company-scoped record for
content artifacts and their supporting metadata.
> - The backend needs durable storage, API routes, revision history,
issue linkage, and company-boundary enforcement before the UI can depend
on Cases.
> - The UI needs an opt-in navigation surface, list/detail views,
reference chips, and issue-page context so operators can inspect Cases
without making them the default workflow.
> - The agent-facing skills need a contract for creating and updating
Cases so automated content workflows can dogfood the feature.
> - This pull request ships that experimental end-to-end path behind the
`enableCases` flag.
> - The benefit is a first-class place to collect content work,
references, attachments, revisions, and related execution threads
without polluting the core issue model.

## Linked Issues or Issue Description

No public GitHub issue exists for this experimental feature.

Feature request fields:

### Problem

Content-oriented work such as release notes, announcements, docs, and
campaigns can span many execution issues, which makes the final artifact
hard to find and reason about after the execution thread moves on.

### Proposed solution

Add an experimental Cases object that is company-scoped, linked to
issues, queryable through the API, inspectable in the board UI, and
writable by agent workflows through documented conventions.

### Alternatives considered

Continue encoding content artifacts directly in issues or documents
only. That keeps the data model smaller, but it does not give operators
a stable artifact-centric view or a clean way to link related execution
history.

### Roadmap alignment

Checked `ROADMAP.md`; this PR does not duplicate an existing planned
core roadmap item.

## What Changed

- Added the `cases` data model, migration, schema exports, and
experimental `enableCases` instance setting.
- Added company-scoped Cases API routes for list/detail/update, issue
links, revisions, children, activity events, annotations, attachments,
and idempotent agent-oriented upserts.
- Scoped case and issue lookup helpers before access checks so
inaccessible cross-company identifiers resolve as not found rather than
leaking existence.
- Fixed case PATCH timestamp handling so non-status updates cannot
overwrite `completedAt` from a stale pre-transaction row snapshot.
- Moved Cases list type/status/project filters into the server request
before the server-side limit is applied, including multi-select filters
and no-project filtering.
- Added backend route coverage for creation, updates, idempotency, issue
linking, attribution, company-boundary enforcement, OpenAPI
registration, list filtering, timestamp patch behavior, and inaccessible
lookup regressions.
- Added the experimental Cases UI surface: sidebar entry, gated routes,
list filters/grouping, detail overview, activity, revisions, children,
attachments, and issue-page case rail.
- Added case reference rendering and company-prefixed case href
generation so case links resolve directly inside the active company
route.
- Added Paperclip skill documentation for agent workflows that create or
update Cases.
- Wired release-content skills to emit Cases for dogfooding.
- Rebased onto current `master` and renumbered the Cases migrations to
`0143`/`0144` after the latest upstream migration sequence.

## Verification

- Current PR head: `ecc13be0d`.
- Rebased on current `master` (`606aa4f266`) and pushed to the existing
PR branch.
- `git diff --check origin/master...HEAD` — passed before the first
update push; subsequent committed diffs were also checked with `git diff
--check` before commit.
- Guardrails checked: no `pnpm-lock.yaml` changes, no
`.github/workflows` changes, and changed-file count is below the
Greptile 100-file limit.
- `pnpm --filter @paperclipai/server exec vitest run
src/__tests__/cases-routes.test.ts
src/__tests__/instance-settings-service.test.ts
src/__tests__/openapi-routes.test.ts` — passed, 3 files / 26 tests
before review-fix commits.
- `pnpm --filter @paperclipai/server exec vitest run
src/__tests__/cases-routes.test.ts` — passed after each server-side
Greptile fix, latest 1 file / 15 tests.
- `pnpm --filter @paperclipai/server typecheck` — passed after the
timestamp and lookup fixes.
- `pnpm --filter @paperclipai/ui exec vitest run
src/pages/Cases.test.tsx src/pages/CaseDetail.test.tsx
src/pages/CompanySkills.test.tsx src/App.cases-routing.test.tsx` —
passed, 4 files / 30 tests before review-fix commits.
- `pnpm --filter @paperclipai/ui exec vitest run
src/pages/Cases.test.tsx` — passed after the list-filter fix, 1 file /
12 tests.
- `pnpm --filter @paperclipai/ui typecheck` — passed after the
list-filter fix.
- `pnpm check:token-gates` — passed after UI changes.
- Remote PR checks on head `ecc13be0d` are green: Paperclip CI, build,
typecheck, test matrix, e2e, Canary Dry Run, policy, commit review,
Superagent Security Scan, Socket, Snyk, and Greptile passed; Storybook
visual regression is skipped and security-review is neutral.
- Greptile Review: 5/5 confidence, zero unresolved Greptile threads.

## Risks

- Medium feature risk because this introduces a new experimental domain
object across database, server, shared contracts, skills, and UI.
- The feature is gated behind `enableCases`, which limits default
operator exposure while the model is exercised.
- Case links now prefer company-prefixed hrefs; the unprefixed redirect
remains for externally entered URLs.
- Cases list filtering now sends multi-select filters to the server
before limiting; the UI still applies the same local filters as a second
pass for ancestor/context rows.
- Migrations were renumbered on top of current master; the SQL uses
guarded `IF NOT EXISTS` / `ADD COLUMN IF NOT EXISTS` patterns where
relevant for safer replay.

> For core feature work, check [`ROADMAP.md`](ROADMAP.md) first and
discuss it in `#dev` before opening the PR. Feature PRs that overlap
with planned core work may need to be redirected — check the roadmap
first. See `CONTRIBUTING.md`.

## Model Used

OpenAI GPT-5 Codex in the Paperclip local coding environment was used
for this PR curation, rebase verification, review-fix implementation,
push, and PR description update. The runtime exposes tool use and shell
execution; context-window size is not exposed by this Paperclip adapter.
Several implementation commits also include AI co-author trailers
recorded in git history.

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I searched the GitHub PR list for similar PRs and confirmed this
is not a duplicate
- [x] I have either (a) linked existing issues with `Fixes: #` / `Closes
#` / `Refs #` OR (b) described the issue in-PR following the relevant
issue template
- [x] I have not referenced internal/instance-local Paperclip issues or
links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip`
URLs)
- [ ] My branch name describes the change (e.g. `docs/...`, `fix/...`)
and contains no internal Paperclip ticket id or instance-derived details
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [x] All Paperclip CI gates are green
- [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups
- [x] I will address all Greptile and reviewer comments before
requesting merge

---------

Co-authored-by: Paperclip <noreply@paperclip.ing>
Co-authored-by: Claude Opus 4.8 <noreply@anthropic.com>
2026-07-09 22:11:03 -05:00
DottaandPaperclip 9a1d4b7983 fix(ui): use prose editor for markdown agent instructions (#9332)
## Thinking Path

> - Paperclip is the open source app people use to manage AI agents for
work
> - Agent setup depends on instruction files that are readable and
editable from the board UI
> - The instructions tab already receives server-side metadata
describing whether each file is Markdown
> - The UI was deciding Markdown editor usage primarily from the file
extension, which makes extensionless Markdown instruction files feel
like raw code
> - This pull request makes the instructions editor trust server
Markdown metadata for existing files and keep extension fallback only
for new unsaved files
> - The benefit is that AGENTS-style prose instructions render and edit
like prose while explicitly non-Markdown files still use the raw
textarea

## Linked Issues or Issue Description

- Refs #8201
- Refs #5652
- Refs #3427
- Refs #2068
- Related PRs: #2468, #2620

## What Changed

- Use server `markdown` metadata from instruction file details/summaries
to choose the prose Markdown editor for existing instruction files.
- Keep extension-based Markdown detection only for pending new files
before server metadata exists.
- Remove the monospace content styling from the Markdown editor path so
prose instructions read like normal text.
- Add focused tests for extensionless Markdown files, new `.md` files,
and `.md` files explicitly marked non-Markdown by the server.

## Verification

- `pnpm check:token-gates`
- `pnpm exec vitest run ui/src/pages/AgentDetail.instructions.test.tsx`
- `pnpm --filter @paperclipai/ui typecheck`

## Risks

- Low risk. The editor selection now depends on server metadata for
existing files, so incorrect server metadata would choose the wrong
editor. The fallback still preserves extension-based behavior for newly
created unsaved files.

> For core feature work, check [`ROADMAP.md`](ROADMAP.md) first and
discuss it in `#dev` before opening the PR. Feature PRs that overlap
with planned core work may need to be redirected — check the roadmap
first. See `CONTRIBUTING.md`.

## Model Used

- OpenAI GPT-5 via Codex coding agent, tool-enabled terminal workflow.
Context window details were not exposed by the runtime.

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have searched GitHub for duplicate or related PRs and linked
them above
- [x] I have either (a) linked existing issues with `Fixes: #` / `Closes
#` / `Refs #` OR (b) described the issue in-PR following the relevant
issue template
- [x] I have not referenced internal/instance-local Paperclip issues or
links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip`
URLs)
- [x] My branch name describes the change (e.g. `docs/...`, `fix/...`)
and contains no internal Paperclip ticket id or instance-derived details
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [x] All Paperclip CI gates are green
- [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups
- [x] I will address all Greptile and reviewer comments before
requesting merge

---------

Co-authored-by: Paperclip <noreply@paperclip.ing>
2026-07-09 19:43:44 -05:00
606aa4f266 feat(search): filters, sorting, operators & command-palette parity (#9327)
## Thinking Path

> - Paperclip is the open source app people use to manage AI agents for
work
> - Company search is the primary way operators find issues, comments,
documents, artifacts, agents, and projects across a busy company
> - Search previously supported only a bare text query: no way to narrow
by status/assignee/project/label/date, no sort control, no typed
operators, and weak relevance/snippets meant hunting through noise
> - As companies accumulate tens of thousands of items, unfiltered
single-sort search stops scaling for day-to-day operator workflows
> - This pull request adds a full filtering model (filter bar, chips,
mobile sheet, URL state), sort modes, typed query operators (`status:`,
`assignee:`, `type:`, …) with command-palette parity,
relevance/snippet/deep-link improvements, zero-results recovery, and the
supporting shared validators, backend service work, and DB indexes
> - The benefit is that operators can go from a vague query to the exact
item in a couple of keystrokes, on desktop and mobile, with shareable
filtered-search URLs

## Linked Issues or Issue Description

No existing public GitHub issue; describing the underlying feature
request inline (per feature_request template):

- **Problem:** Company search accepted only a plain text query. Users
could not filter results by status, assignee, project, label, or
recency; could not change result ordering; and got no guidance when
filters emptied the result set.
- **Desired solution:** Structured search filters (UI controls + typed
query operators + URL parameters), selectable sort modes, better
relevance and snippets with exact deep links, and parity between the
search page and the command palette.
- **Alternatives considered:** Client-side filtering of unfiltered
results (does not scale past the fetch limit); a separate "advanced
search" page (splits the surface and duplicates state handling).

Related (not duplicate) PRs found while searching: #4848 (issue search
query planning), #8235 (search rate limiting).

## What Changed

- **Shared contract:** new search filter/sort/count/zero-results types
and validators in `packages/shared` (`validators/search.ts`, types
index).
- **Backend:** `server/src/services/company-search.ts` supports issue
filters, sort modes, per-filter option counts, snippets, artifact
visibility, and zero-results loosen suggestions; single-statement match
replaces per-scope scans and predicates are trigram-index compatible
(~3.7s → ~350ms on a live 14.8k-hit corpus).
- **DB:** migration `0142_company_search_sort_indexes.sql` adds the
supporting indexes.
- **Search page (`ui/src/pages/Search.tsx`):** filter bar, removable
chips, mobile filter sheet with result-count preview, sort menu, URL
round-tripping, zero-results recovery UI.
- **Query operators (`ui/src/lib/search-query-parser.ts`):** typed
operators parsed into filters, operator autocomplete, filter pills.
- **Command palette:** operator-aware parsing and full-search handoff.
- **Stale-operator fix (latest commit):** typed operator filters are no
longer folded into persistent URL-filter state, so deleting a token
(e.g. removing `status:blocked` from the input) actually removes the
filter from subsequent requests; filter-control edits materialize
control state and strip typed tokens so a removed chip cannot resurrect
from the input.

## Verification

- `cd ui && npx vitest run src/pages/Search.test.tsx` — 19 tests
including two new red→green regressions for the stale-operator paths
(both fail on the previous commit, pass now).
- `cd ui && npx vitest run src/components/CommandPalette.test.tsx` and
`cd server && npx vitest run
src/services/company-search-service.test.ts` — operator parity and
backend filter/sort/count coverage.
- `cd ui && npx tsc --noEmit` — clean.
- Manual: open `/search`, type `auth status:blocked`, confirm the status
filter applies; delete `status:blocked`, confirm results are unfiltered
again; drive the same filters from the filter bar/chips/mobile sheet and
confirm the URL round-trips (reload/back/forward preserves state).
- Full end-to-end QA pass (9/9 acceptance checks) against the wireframes
on desktop (1280px) and mobile (390px) with a live API and browser
automation.

## Risks

- Additive migration (indexes only, no data rewrites) — safe to roll
forward; index creation cost is paid once at migrate time.
- Search request shape gains optional parameters only; old clients keep
working.
- Behavioral shift: filter-control edits now strip typed operator tokens
from the query text (their values persist as filter state) — deliberate,
so removed filters stay removed.
- Ranking changes alter result ordering for existing queries; covered by
service tests and the QA pass.

> For core feature work, check [`ROADMAP.md`](ROADMAP.md) first and
discuss it in `#dev` before opening the PR. Feature PRs that overlap
with planned core work may need to be redirected — check the roadmap
first. See `CONTRIBUTING.md`.

## Model Used

- Claude Fable 5 (`claude-fable-5`, Anthropic, extended thinking + tool
use) — stale-operator-filter fix, regression tests, PR preparation.
- GPT-5 Codex (`codex_local` adapter) and Claude Opus 4.6
(`claude-opus-4-6`) — earlier implementation phases (backend contract,
filter UI, operators, ranking) under agent orchestration.

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have searched GitHub for duplicate or related PRs and linked
them above
- [x] I have either (a) linked existing issues with `Fixes: #` / `Closes
#` / `Refs #` OR (b) described the issue in-PR following the relevant
issue template
- [x] I have not referenced internal/instance-local Paperclip issues or
links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip`
URLs)
- [ ] My branch name describes the change (e.g. `docs/...`, `fix/...`)
and contains no internal Paperclip ticket id or instance-derived details
— pre-existing branch name retained to avoid closing/reopening the PR
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [x] I have updated relevant documentation to reflect my changes (no
user-facing docs affected)
- [x] I have considered and documented any risks above
- [ ] All Paperclip CI gates are green (pending re-run on latest commit)
- [ ] Greptile is 5/5 with no open P2s, recommendations, or follow-ups
(pending re-review of the stale-filter fix)
- [x] I will address all Greptile and reviewer comments before
requesting merge

🤖 Generated with [Claude Code](https://claude.com/claude-code)

---------

Co-authored-by: Paperclip <noreply@paperclip.ing>
Co-authored-by: Claude Opus 4.8 <noreply@anthropic.com>
2026-07-09 19:32:58 -05:00
f3ca4d24bc fix: repair dirty/foreign-branch execution worktrees (#9297)
## Thinking Path

> - Paperclip is the open source app people use to manage AI agents for
work.
> - Execution workspaces are the bridge between Paperclip's control
plane and a local agent's checked-out repository state.
> - When a workspace is restored after a failed or interrupted run, the
recorded branch can disagree with the branch currently checked out on
disk.
> - A clean branch mismatch can be reconciled safely, but a dirty
mismatch needs a lossless path that does not discard uncommitted agent
work.
> - This pull request adds a quarantine-and-restore path that saves
dirty work to a rescue branch, restores the recorded branch, and exposes
the repair from the board UI and run page.
> - The benefit is that operators can recover wedged execution
workspaces without losing work or moving another live branch
unexpectedly.

## Linked Issues or Issue Description

No public GitHub issue exists for this workspace-recovery failure, so
this PR includes the bug report inline.

**What happened**

A git worktree-backed execution workspace could become wedged when
Paperclip expected one branch but found a different checked-out branch
with dirty tracked or untracked files. The existing safe repair path
refused the restore, leaving the source task blocked with no lossless
one-click recovery path.

**Expected behavior**

Paperclip should preserve dirty work before restoring the recorded
workspace branch. If another live workspace claims the checked-out
branch, or an attached runtime service is active, the repair should
refuse with clear operator-facing evidence instead of risking work loss
or file contention.

**Steps to reproduce**

Create a git worktree execution workspace whose persisted branch name
differs from the checked-out branch, add dirty tracked or untracked
files in that worktree, then trigger workspace validation or use the
branch reconcile endpoint. Before this change, the dirty mismatch
remained blocked because Paperclip had no quarantine restore mode.

**Paperclip version or commit**

Observed on the pre-fix workspace-recovery implementation. Verified on
this PR head after rebasing onto current `master`.

**Deployment mode**

Local trusted development/worktree deployments using git worktree
execution workspaces and optional workspace runtime services.

## What Changed

- Added dirty-worktree quarantine repair that creates a rescue branch,
commits dirty tracked and untracked files there, restores the recorded
branch, writes audit comments/activity, and preserves the live foreign
branch ref.
- Added `quarantine_restore` branch reconcile API support,
recovery-action resolution, source-task wake behavior, execution-review
preservation, claimant refusal, runtime-service refusal, and coverage
for the non-transactional git ordering.
- Added board UI controls for the repair action in the recovery card
plus a compact failed-run workspace recovery surface that uses the same
reconcile handlers.
- Hardened Greptile follow-up cases by best-effort restoring the
recorded branch after a mid-sequence rescue commit failure and by
refusing quarantine restore while attached runtime services are active.

## Verification

- `pnpm exec vitest run
server/src/__tests__/execution-workspaces-service.test.ts -t
"quarantine_restore"`
- `pnpm exec vitest run server/src/__tests__/workspace-runtime.test.ts
-t "workspace dirty quarantine branch repair"`
- `pnpm exec vitest run
server/src/__tests__/heartbeat-workspace-finalize-branch.test.ts -t
"repairs clean unrecorded branch drift|adopts unrecorded forward branch
drift"`
- `pnpm exec vitest run
server/src/__tests__/workspace-runtime-routes-authz.test.ts`
- `pnpm --filter @paperclipai/server typecheck`
- Earlier PR verification covered the route, service, heartbeat, UI
component, and run-page recovery surfaces; Cutter posted public preview
screenshots for the repair popover and run-page panel at
https://github.com/paperclipai/paperclip/pull/9297#issuecomment-4926934211.
- GitHub PR checks are green on
`dcac76b05f4cf6e1ee16544c2831d83c7857e475`.
- Greptile is 5/5 with zero annotations and no unresolved review threads
on `dcac76b05f4cf6e1ee16544c2831d83c7857e475`.

## Risks

- Moderate risk because the change intentionally runs git commands
against local worktrees; the implementation refuses dirty repair when
another claimant or active runtime service is detected and records
rescue refs for auditability.
- Compatibility / release-note callout for self-hosted operators:
existing instances that left `enableWorkspaceBranchReconcileForward`
unset now get automatic forward branch reconciliation during heartbeat
workspace recovery. Operators who want the previous advisory-only
behavior can set `experimental.enableWorkspaceBranchReconcileForward` to
`false`; dirty quarantine repair can likewise be disabled with
`experimental.enableWorkspaceDirtyQuarantineRepair: false`.
- If the git rescue succeeds but a later database write fails, the
worktree may already be restored while the recovery action remains open;
this ordering is documented in code because git side effects cannot
participate in the database transaction.
- UI risk is limited to the workspace recovery surfaces and covered by
component tests plus the existing Cutter visual preview.

## Model Used

OpenAI Codex coding agent based on GPT-5, with repository tool use,
shell execution, and local test execution. Earlier preserved commits on
this branch also show Claude Code / Claude Opus 4.8 assistance in their
commit metadata.

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have searched GitHub for duplicate or related PRs and linked
them above
- [x] I have either (a) linked existing issues with `Fixes: #` / `Closes
#` / `Refs #` OR (b) described the issue in-PR following the relevant
issue template
- [x] I have not referenced internal/instance-local Paperclip issues or
links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip`
URLs)
- [x] Branch naming exception documented: this PR preserves the existing
worktree branch requested for publication while keeping the PR title and
body public-facing
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [x] All Paperclip CI gates are green
- [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups
- [x] I will address all Greptile and reviewer comments before
requesting merge

---------

Co-authored-by: Paperclip <noreply@paperclip.ing>
Co-authored-by: Claude Opus 4.8 <noreply@anthropic.com>
2026-07-09 18:19:49 -05:00
DottaandPaperclip 176645187c Fix request storm polling and issue-list coalescing (#9190)
## Thinking Path

> - Paperclip is the open source app people use to manage AI agents for
work
> - The board UI keeps issue, agent, activity, and run state fresh
through polling across several pages and sidebar surfaces
> - When multiple components or browser tabs poll the same company data
at the same time, the API can receive bursts of duplicate issue-list
requests
> - Those duplicate requests increase database and server load without
returning meaningfully different data
> - This pull request adds server-side compression/coalescing plus
client-side visibility-aware and cross-tab shared polling
> - The benefit is lower request volume during normal board usage while
preserving fresh UI data for active users

## Linked Issues or Issue Description

No exact public GitHub issue was found for this request.

Problem:
- The board can issue redundant polling requests for the same issue-list
data from multiple UI surfaces and tabs.
- In busy operator sessions, those bursts can trigger request-storm
behavior and unnecessary issue-list load.
- Expected behavior is to reuse identical in-flight work server-side and
reduce hidden-tab or duplicate-tab polling client-side while preserving
normal refresh behavior.

Related public context found during duplicate search:
- #8206 covers a different board UI 404-storm scope.
- #5165 covers separate issue-list behavior around page-size truncation.

## What Changed

- Added API compression middleware foundation and a company/created-at
index for heartbeat run access.
- Added server-side issue-list request storm detection and identical
in-flight request coalescing.
- Added UI fetch metadata, visibility-aware polling, and request
deduplication for issue/activity/client calls.
- Added cross-tab shared polling primitives and wired them into the
sidebar, inbox, dashboard, issue, project, routine, and agent surfaces.
- Resolved the latest `master` migration collision by keeping upstream
`0140_built_in_managed_resources.sql` and renumbering this branch's
heartbeat-run index migration to
`0141_heartbeat_runs_company_created_at_index.sql`; the SQL uses `CREATE
INDEX IF NOT EXISTS` for idempotency.
- Stabilized server heartbeat cleanup tests exposed by the PR check
matrix.
- Fixed the Greptile compression follow-up by weakening strong ETags on
encoded JSON responses and bypassing compression for streamed/download
responses.

## Verification

- `pnpm exec vitest run ui/src/components/IssuesList.test.tsx
ui/src/pages/Inbox.test.tsx` — passed after resolving the latest
`master` conflict in `IssuesList.tsx` and updating the 200-result cap
expectations.
- `pnpm check:token-gates` — passed after the UI conflict resolution.
- `jq -e '.entries | length as $n | (map(.idx) | unique | length == $n)
and (map(.tag) | unique | length == $n)'
packages/db/src/migrations/meta/_journal.json` — passed after
renumbering the migration to `0141`.
- `pnpm exec vitest run server/src/__tests__/api-compression.test.ts` -
passed after the compression follow-up.
- `pnpm exec vitest run
server/src/__tests__/issue-list-assignee-filter-routes.test.ts` - passed
after the compression follow-up.
- `pnpm --filter @paperclipai/server typecheck` - passed after the
compression follow-up.
- Greptile Review for head `8dbddac41ec273fda404100b4981ddb912fad57b` -
passed after the latest conflict/migration fix; all Greptile review
threads are resolved.
- `pnpm exec vitest run server/src/__tests__/api-compression.test.ts
server/src/__tests__/issue-list-assignee-filter-routes.test.ts
ui/src/api/client.test.ts ui/src/api/issues.test.ts
ui/src/lib/polling.test.ts ui/src/lib/cross-tab-poll.test.ts
ui/src/pages/Inbox.test.tsx ui/src/components/SidebarProjects.test.tsx
ui/src/components/SidebarAccountMenu.test.tsx
ui/src/lib/issueDetailCache.test.ts` — passed.
- `pnpm exec vitest run ui/src/api/client.test.ts` — passed.
- `pnpm exec vitest run ui/src/pages/Inbox.test.tsx
ui/src/components/SidebarProjects.test.tsx
ui/src/components/SidebarAccountMenu.test.tsx
ui/src/lib/issueDetailCache.test.ts` — passed.
- `pnpm exec vitest run
server/src/__tests__/heartbeat-worktree-suppression.test.ts` — passed.
- `pnpm exec vitest run
server/src/__tests__/low-trust-red-team-routes.test.ts` — passed.
- `pnpm exec vitest run
server/src/__tests__/heartbeat-workspace-finalize-branch.test.ts` —
passed.
- `pnpm --filter @paperclipai/ui typecheck` — passed.
- `pnpm --filter @paperclipai/server typecheck` — passed.
- GitHub PR checks for head `8dbddac41ec273fda404100b4981ddb912fad57b`:
all GitHub Actions/status checks passed; Greptile, Superagent, Socket,
Snyk, build, typecheck/release registry, general tests, serialized
server suites, e2e, canary dry run, policy, and commitperclip review are
green; Storybook visual regression and security-review were
skipped/neutral by policy.
- Confirmed this branch does not include `pnpm-lock.yaml` or
`.github/workflows` changes.

## Risks

- Medium risk: issue-list coalescing changes request timing and cache
semantics for a hot API path.
- Medium risk: cross-tab polling uses browser coordination primitives,
so older or unusual browser environments need fallback behavior to stay
correct.
- Low migration risk: the new index migration is ordered after current
`master` and uses `CREATE INDEX IF NOT EXISTS`.

> For core feature work, check [`ROADMAP.md`](ROADMAP.md) first and
discuss it in `#dev` before opening the PR. Feature PRs that overlap
with planned core work may need to be redirected — check the roadmap
first. See `CONTRIBUTING.md`.

## Model Used

OpenAI Codex coding agent, GPT-5-based model, tool-enabled with
shell/git execution. Exact hosted deployment identifier and
context-window size were not surfaced in the agent runtime.

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have searched GitHub for duplicate or related PRs and linked
them above
- [x] I have either (a) linked existing issues with `Fixes: #` / `Closes
#` / `Refs #` OR (b) described the issue in-PR following the relevant
issue template
- [x] I have not referenced internal/instance-local Paperclip issues or
links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip`
URLs)
- [x] My branch name describes the change (e.g. `docs/...`, `fix/...`)
and contains no internal Paperclip ticket id or instance-derived details
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [x] All Paperclip CI gates are green
- [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups
- [x] I will address all Greptile and reviewer comments before
requesting merge

---------

Co-authored-by: Paperclip <noreply@paperclip.ing>
2026-07-09 17:38:34 -05:00
DottaandPaperclip 9acce52aa5 [codex] Polish operator UI work state details (#9320)
## Thinking Path

> - Paperclip is the open source app people use to manage AI agents for
work
> - Operators use the issue list, blocked-work notices, pipeline body
documents, and issue documents to understand what agents are doing
> - Some of those surfaces had low-information details: live-work
blockers were visually easy to miss, revision history showed generic
actor labels, and selected active subtasks carried an extra accent
border
> - These details matter because Paperclip's default UI should make
agent state and work history legible without requiring users to inspect
raw logs
> - This pull request groups a small set of related operator UI polish
changes for those work-state and document-history surfaces
> - The benefit is clearer review context for blocked work, better
attribution in document revision history, and cleaner active-subtask row
styling

## Linked Issues or Issue Description

No public GitHub issue found during dedup search.

### Bug Report

**Pre-submission checklist**
- Searched existing open PRs/issues for `document revision authors` and
`blocked notice live work`; no duplicates found.
- Reproduced against the current `master` base for this PR.
- Confirmed this is core board UI behavior, not adapter/provider/local
configuration.

**What happened?**
Blocked live-work notices, document revision history, pipeline body
document revision history, and active subtask rows exposed technically
correct but low-signal UI details. Revision menus could show generic
`Board`/`Agent` labels instead of the specific author, and selected
active subtasks had an extra accent border.

**Expected behavior**
Operators should see clear blocked-live-work copy, recognizable revision
authors using available agent/user profile data, and visually consistent
selected task rows.

**Steps to reproduce**
1. Open an issue with a live-work blocker and inspect the blocked
notice.
2. Open an issue document revision menu with agent/user-authored
revisions.
3. Open a pipeline item body document revision menu with
agent/user-authored revisions.
4. Inspect a selected active subtask row in the issue list.

**Paperclip version or commit**
`8b6a06ee2` (`origin/master` at branch creation).

**Deployment mode**
Local dev / self-hosted board UI.

**Installation method**
Built from source.

**Agent adapter(s) involved**
Not adapter-specific (core board UI).

**Database mode**
Not database-related.

**Access context**
Board operator UI.

**Relevant logs or output**
Not applicable.

**Relevant config**
Not applicable.

**Additional context**
This PR is a small polish/fix contribution. `ROADMAP.md` allows tightly
scoped bugs and polish without roadmap-level coordination.

**Privacy checklist**
Reviewed the PR body for private instance references and omitted
internal ticket links.

## What Changed

- Polished the live-work blocked notice copy and tests so operators get
a clearer explanation of what is blocking progress.
- Show issue document revision authors with agent/user names and avatar
treatment instead of generic actor labels.
- Show pipeline body document revision authors with the same available
agent/user profile data.
- Removed the extra left accent border from selected active subtask
rows.
- Stabilized the document revision test helper for React runtimes where
`act` is not exported as a function.

## Verification

- `git diff --check origin/master..HEAD`
- `git diff --name-only origin/master..HEAD -- .github/workflows
pnpm-lock.yaml` produced no output.
- `pnpm check:token-gates` passed: all color literal, arbitrary bracket
value, and raw font-size gates clean.
- `pnpm exec vitest run ui/src/components/IssueBlockedNotice.test.tsx
ui/src/components/IssueDocumentsSection.test.tsx
ui/src/components/IssueRow.test.tsx` passed: 3 test files, 32 tests.
- `pnpm --filter @paperclipai/ui typecheck` passed.
- Remote PR checks passed on head `3e18fe3f`: 22 complete, 0 pending, 0
failing.
- Greptile completed at 5/5 with no blocking issues after addressing the
pipeline revision author feedback.

## Risks

Low risk. The change is limited to board UI rendering and component
tests. The main risk is a subtle visual regression in issue/document
surfaces that are not covered by screenshots; the affected component
tests cover the intended copy, attribution, and row-style behavior.

> For core feature work, check [`ROADMAP.md`](ROADMAP.md) first and
discuss it in `#dev` before opening the PR. Feature PRs that overlap
with planned core work may need to be redirected — check the roadmap
first. See `CONTRIBUTING.md`.

## Model Used

OpenAI Codex coding agent, GPT-5 model family, tool-enabled CLI session.
Exact runtime context window is not exposed by this execution
environment.

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have searched GitHub for duplicate or related PRs and linked
them above
- [x] I have either (a) linked existing issues with `Fixes: #` / `Closes
#` / `Refs #` OR (b) described the issue in-PR following the relevant
issue template
- [x] I have not referenced internal/instance-local Paperclip issues or
links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip`
URLs)
- [x] My branch name describes the change (e.g. `docs/...`, `fix/...`)
and contains no internal Paperclip ticket id or instance-derived details
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [x] All Paperclip CI gates are green
- [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups
- [x] I will address all Greptile and reviewer comments before
requesting merge

---------

Co-authored-by: Paperclip <noreply@paperclip.ing>
2026-07-09 17:36:53 -05:00
DottaandPaperclip 8b6a06ee25 [codex] Add built-in agents and Reflection Coach bundle (#9206)
## Thinking Path

> - Paperclip is the open source app people use to manage AI agents for
work.
> - Operators need first-party agent capabilities for repeatable company
work, not just manually created one-off agents.
> - Built-in agents need to behave like normal company-scoped agents
while preserving approval gates, permissions, budgets, and audit trails.
> - Reflection and coaching work also needs bundled instructions, skill
content, and a routine so the feature can be installed and reset
predictably.
> - The API, database, UI, portability, and tests all need to agree on
the built-in lifecycle from not provisioned through setup, approval,
ready, paused, and reset.
> - This pull request adds built-in agent provisioning and the
Reflection Coach bundle end-to-end.
> - The benefit is a safer first-party path for Paperclip-managed agents
without bypassing the same governance model used for operator-created
agents.

## Linked Issues or Issue Description

No public GitHub issue was found for this exact built-in agent and
Reflection Coach bundle work.

Problem/motivation:
- Paperclip did not have a first-party built-in agent lifecycle for
product-owned agents.
- Bundled agent resources such as default instructions, skills, and
routines needed managed ownership and reset semantics.
- Approval-gated companies needed built-in setup to preserve requested
adapter, budget, manager, and permission state through board approval.
- The board UI needed clear built-in badges, setup affordances,
readiness state, and bundle status without exposing secrets.

Proposed solution:
- Add a company-scoped built-in agent registry,
provisioning/reset/reconcile/status APIs, and Reflection Coach bundled
resources.
- Track bundled managed resources in the database with idempotent
migration behavior.
- Reuse existing agent approval, authorization, budget, and activity-log
paths instead of creating a bypass.
- Add UI setup, badges, gates, bundle panels, and route coverage for
built-in agents.

Duplicate search:
- Searched GitHub PRs for `built-in agents Reflection Coach
repo:paperclipai/paperclip`; only this PR was returned.
- Searched GitHub issues for the same query; no public issues were
returned.

## What Changed

- Added built-in agent definitions, lifecycle state derivation,
provisioning, reset, reconcile, status, and routine-control routes.
- Added the `built_in_managed_resources` migration and schema exports
for bundled instructions, skill, and routine ownership.
- Added the Reflection Coach built-in bundle with default instructions,
skill catalog content, routine template, default permissions, and
managed-resource drift handling.
- Added approval-aware provisioning behavior that preserves requested
adapter config, budgets, manager assignment, and built-in permissions
through hire approval.
- Added authorization and mutation gates for built-in agent and skill
changes, including consented Reflection Coach change paths.
- Added UI surfaces for built-in agent setup, roster/detail badges,
readiness gates, bundle status, routine controls, and route filtering.
- Added company import/export and validator coverage for built-in
managed resources and low-trust/red-team presets.
- Addressed Greptile follow-ups for pending approval reconciliation,
consent-gate error propagation, config-read authorization fallback,
approval-path manager preservation, and non-model adapter provisioning.

## Verification

Local verification:
- `git diff --check public/master..HEAD` passed.
- `pnpm check:token-gates` passed with all gates clean.
- `pnpm exec vitest run
ui/src/components/ConfigureBuiltInAgentModal.test.tsx` passed: 1 file, 4
tests.
- `pnpm exec vitest run ui/src/components/EntityRow.test.tsx
ui/src/pages/Agents.test.tsx ui/src/components/BuiltInAgentGate.test.tsx
ui/src/components/ConfigureBuiltInAgentModal.test.tsx
ui/src/components/BuiltInBundlePanel.test.tsx
ui/src/pages/InstanceExperimentalSettings.test.tsx
ui/src/pages/Routines.test.tsx` passed: 7 files, 64 tests.
- `pnpm --filter @paperclipai/server exec vitest run
src/__tests__/built-in-agents.test.ts
src/__tests__/authorization-service.test.ts
src/__tests__/company-skills-routes.test.ts` passed: 3 files, 91 tests.
- `pnpm --filter @paperclipai/db check:migrations` passed.
- `pnpm -r typecheck` passed after the rebase; `pnpm --filter ui
typecheck` passed after the final UI review fix.

Remote verification on latest head
`1c61f693a4ec881d739022b0e75a8ca8bf8c2cd8`:
- Merge state: `CLEAN`.
- Greptile: `5/5`, zero unresolved Greptile threads.
- PR check rollup: all checks successful, neutral, or skipped as
expected.
- Passing gates include Build, Typecheck + Release Registry, all server
shards, all workspace shards, all serialized server suites, e2e, Canary
Dry Run, policy, review, verify, Socket, Superagent, and Snyk.

## Risks

- This adds a new managed-resource table and migration; the migration
uses idempotent create/add/index guards and passed migration safety
checks.
- Built-in agent provisioning touches approval and authorization paths;
tests cover pending approval preservation, stale retry rejection,
consent gates, and config-read fallback behavior.
- Reflection Coach creates managed instructions, skill, and routine
resources; drift/reset behavior is covered by service tests and redacted
API responses.
- Non-model adapter setup now provisions a `needs_setup` built-in row
before command/endpoint fields are complete; this matches the server
lifecycle and is covered by the setup modal regression test.

## Model Used

OpenAI Codex coding agent based on GPT-5. Exact hosted model ID,
context-window size, and reasoning-mode labels are not exposed in this
runtime; tool use, shell execution, GitHub CLI/API access, and local
code editing were enabled.

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have searched GitHub for duplicate or related PRs and linked
them above
- [x] I have either (a) linked existing issues with `Fixes: #` / `Closes
#` / `Refs #` OR (b) described the issue in-PR following the relevant
issue template
- [x] I have not referenced internal/instance-local Paperclip issues or
links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip`
URLs)
- [x] My branch name describes the change (e.g. `docs/...`, `fix/...`)
and contains no internal Paperclip ticket id or instance-derived details
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [x] All Paperclip CI gates are green
- [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups
- [x] I will address all Greptile and reviewer comments before
requesting merge

---------

Co-authored-by: Paperclip <noreply@paperclip.ing>
2026-07-09 16:29:30 -05:00
scotttongandClaude Fable 5 53d09d4c34 fix(ui): inbox/task list parity, nesting alignment, hover perf, and routine detail polish (#9317)
## Thinking Path

> - Paperclip's UI is governed by the design system merged in #9134 and
the component convergence in #9240 — one Card, one Badge, one nav row,
one `IssueRow`, a single multiplicative radius ladder.
> - With those primitives in place, the remaining rough edges were
interaction and alignment details on the surfaces people use every day:
the inbox, the task list, the sidebar, and the routine/task detail
pages.
> - Each item here was reported from live use and fixed against a
running instance, then verified by measurement (pixel alignment, frame
timing) rather than by eye alone.
> - The result is that the inbox and task lists now behave as one system
(same hover, keyboard nav, tree-guide, and archive language), list
nesting reads correctly, list hover is smooth, and the routine detail
page scrolls and aligns like the rest of the app.

## Linked Issues or Issue Description

No public GitHub issue exists for this work; describing per the feature
template.

- **Problem**: after the design-system foundation (#9134) and component
convergence (#9240), the inbox/task lists still had interaction and
alignment gaps — hover lag on long lists, keyboard navigation that only
partly matched between the two lists, workspace/parent nesting whose
guides and chevrons didn't line up, an inbox that sat offset from the
task list, and a routine detail page with an odd double-scroll and a
bespoke sub-nav.
- **Proposed behavior**: the inbox and task lists share one interaction
contract (hover, keyboard nav, collapse, archive), list nesting aligns
to the status column with clean chevrons, list hover is CSS-only (no
per-hover re-render), and the routine detail page uses a fixed
header/sub-nav with a single scrolling content region and a sub-nav that
matches the primary nav.

## What Changed

- **List hover performance**: hover is now painted purely by CSS
`:hover` and records the hovered row in a ref, instead of writing
list-selection state on every `mouseenter` (which re-rendered 100–300
non-memoized rows per hover). Keyboard nav reads the ref so it still
continues from the hovered row; the keyboard band clears on the first
real mouse move so hover and keyboard selection never show two bands at
once. The row's `transition-colors` fade was removed so the highlight
snaps (no comet-tail). Measured on a 100-row scrub: worst frame **333 ms
→ 33 ms**, long frames (>50 ms) **12 → 0**, avg **41 → 60 fps**.
- **Inbox ↔ task-list parity**: keyboard navigation works on every inbox
tab (archive/read keys stay scoped to the archivable tab); group headers
and parent tasks collapse/expand with the arrow keys in both lists; the
task list gains the same j/k / arrows / Enter selection model as the
inbox; hover selection bands match; the `g` then `i` go-to-inbox chord
works app-wide.
- **List nesting & alignment**: the workspace group-header chevron lines
up exactly with the task chevrons below it (both lists); the
parent→child connector line drops from under the parent's **status
icon** rather than its chevron and breaks with a 14px gap around a
nested row's own chevron; and inbox rows line up with the task list
(read rows no longer reserve a mark-read column).
- **Inbox archive affordance**: moved from a bare `x` left of the status
icon to an `Archive` icon + label button on the right (before the
timestamp), revealed on row hover; the left slot now carries only the
unread dot; swipe-to-archive is unchanged.
- **Sidebar**: when no agent has a live run, the AGENTS section shows 3
recent agents (was 5) plus "See all agents"; the working-agents view is
unchanged.
- **Routine detail page**: the layout is bounded to the main scroll area
so the header (Run now + automation toggle) and the sub-nav stay fixed
and only the section content scrolls (was a page-level scroll competing
with a `sticky` sub-nav). The sub-nav items adopt the primary nav's
rhythm — row padding/height, inset rounded pill, type scale, and 16px
icons — and its background matches the main nav.
- **Task detail**: dropped the redundant `🔵` prefix the breadcrumb added
for live/in-progress tasks; the status glyph already conveys that state.

## Verification

- `pnpm check:token-gates` → 3/3 CLEAN
- `pnpm typecheck` → green (all packages)
- `cd ui && npx vitest run` → 2255/2255 (assertions updated in lockstep
where behavior changed)
- `pnpm --filter @paperclipai/ui build` → exit 0
- Storybook visual regression: run locally throughout (the
baseline-manifest archive is still unpublished, so CI cannot run this
suite — pre-existing condition from #9134). Every visible delta was
reviewed against a live instance and, where it was intentional (nesting
alignment, routine sub-nav restyle, unread-row shift), the affected
snapshots were re-baselined locally.
- Manual/measured: inbox + task lists (grouped and nested, light +
dark), hover-scrub frame timing, keyboard navigation, and the routine
detail scroll/alignment were exercised on a running instance.

## Risks

- Behavior-and-alignment changes concentrated in `IssueRow` /
`IssuesList` / `Inbox` (the shared task-row surfaces). The riskiest area
— the hover/keyboard-selection model — is covered by unit tests (updated
in lockstep) and was measured and driven live.
- The routine detail scroll change restructures that page's layout
container; verified the page's own scroll stays fixed while only the
section content scrolls.
- The visual suite cannot yet run in CI (unpublished baseline archive —
pre-existing); snapshot coverage is local-only until that lands.

## Model Used

- Claude Fable 5 (`claude-fable-5`, Anthropic) via Claude Code — agentic
coding with tool use (file editing, test execution, Playwright
measurement/screenshot verification); extended thinking enabled.

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have searched GitHub for duplicate or related PRs and linked
them above
- [x] I have either (a) linked existing issues with `Fixes: #` / `Closes
#` / `Refs #` OR (b) described the issue in-PR following the relevant
issue template
- [x] I have not referenced internal/instance-local Paperclip issues or
links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip`
URLs)
- [x] My branch name describes the change (e.g. `docs/...`, `fix/...`)
and contains no internal Paperclip ticket id or instance-derived details
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable

---------

Co-authored-by: Claude Fable 5 <noreply@anthropic.com>
2026-07-09 14:25:48 -07:00
Devin FoleyandPaperclip bc85b456a1 fix(ui): keep agent names visible on mobile agents index (#9236)
## Thinking Path

> - Paperclip is the open source app people use to manage AI agents for
work
> - The Agents index (`ui/src/pages/Agents.tsx`) is the main roster
view, with both a list layout and an org-tree layout
> - On mobile viewports the roster could render rows with no visible
agent names because shrink-resistant trailing controls competed with the
fixed-width title cell
> - A roster where names are unreadable is unusable on phones, and the
org-tree view had a related narrow-width overflow risk for deeply
indented names
> - This pull request lets the list title flex below `xl`, hides
nonessential row controls on mobile, keeps Join/Leave reachable, and
truncates org-tree names safely
> - The result is a readable agents index on mobile while preserving
desktop meta-column alignment and truncation

## Linked Issues or Issue Description

No existing public GitHub issue; describing the bug per the bug report
template:

**What happened?**

On a mobile-width viewport, the agents index showed rows where agent
names could become unreadable or disappear because trailing controls
consumed the available row width. In the org view, deeply indented names
could overflow the row.

**Expected behavior**

Agent names remain visible on every viewport, Join/Leave stays
reachable, and desktop rows continue to align and truncate as before.

**Steps to reproduce**

Open Paperclip in a browser at a narrow viewport, navigate to the Agents
index, and observe rows with long names or left-membership controls.

**Paperclip version or commit**

Reproducible on `master` prior to this fix.

**Deployment mode**

Local dev instance. The bug is viewport-width dependent, not
deployment-mode dependent.

## What Changed

- `EntityRow` now lets callers control title text, subtitle text, and
the meta spacer classes while keeping the default truncation behavior
unchanged.
- Agents list rows now use `flex-1 xl:flex-none xl:w-56`, so names get
mobile width while desktop meta columns keep their aligned fixed title
column.
- Long list-view names/subtitles wrap below `xl` but return to
truncation at `xl` and above.
- Join/Leave stays visible on mobile; run/status/star row controls stay
hidden on mobile to avoid squeezing names.
- Org-tree rows use `min-w-0 truncate`, so deep indentation shortens
names with an ellipsis instead of overflowing.
- Regression tests cover mobile name visibility, left-membership
dimming, responsive title/meta behavior, and mobile Join/Leave
reachability.

## Verification

- `pnpm --filter @paperclipai/ui exec vitest run
src/components/EntityRow.test.tsx src/pages/Agents.test.tsx` — 2 files,
18 tests passed.
- `pnpm check:token-gates` — all gates clean.
- `git diff --cached | rg -n "(AKIA|ASIA|SECRET|TOKEN|PASSWORD|PRIVATE
KEY|BEGIN RSA|BEGIN
OPENSSH|api[_-]?key|bearer|paperclip_api_key|DATABASE_URL|postgres://|sk-[A-Za-z0-9]|xox[baprs]-)"`
— no matches before push.

## Risks

- Low risk: UI-only change scoped to the agents index. The main behavior
change is that nonessential row controls remain hidden on mobile while
Join/Leave remains available there and all controls remain available on
larger screens/detail pages.

## Model Used

- OpenAI GPT-5 via Codex (`codex_local` adapter), agentic code editing
and local/GitHub verification.

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have searched GitHub for duplicate or related PRs and linked
them above
- [x] I have either (a) linked existing issues with `Fixes: #` / `Closes
#` / `Refs #` OR (b) described the issue in-PR following the relevant
issue template
- [x] I have not referenced internal/instance-local Paperclip issues or
links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip`
URLs)
- [x] My branch name describes the change (e.g. `docs/...`, `fix/...`)
and contains no internal Paperclip ticket id or instance-derived details
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [ ] All Paperclip CI gates are green
- [ ] Greptile is 5/5 with no open P2s, recommendations, or follow-ups

Co-authored-by: Paperclip <noreply@paperclip.ing>
2026-07-09 13:37:17 -07:00
b13eb5b2b5 Skill Studio: three-pane skill IDE with sandboxed test runs (#9241)
## Thinking Path

> - Paperclip is the open source app people use to manage AI agents for
work.
> - The Skills Manager gives operators a reusable skill layer, but
iteration still required manual edits, ad hoc prompts, and indirect run
inspection.
> - Skill authors need a focused workflow for editing skill files,
saving representative test inputs, and running those inputs through an
agent without exposing harness tasks as normal company work.
> - The backend therefore needs durable test inputs, reusable run
templates, hidden harness issues, scoped run execution, retention
metadata, and read-containment rules around hidden work.
> - The frontend needs a three-pane Studio that keeps skill files, saved
inputs/templates, and run output/history visible together while
preserving the existing design system and token rules.
> - This pull request ships that Skill Studio surface end to end:
database migrations, shared contracts, server APIs/services, hidden
harness execution behavior, UI routes/components, and focused tests.
> - The benefit is faster and safer skill iteration, with inspectable
outputs and fewer ways for internal harness work to leak into normal
task lists, costs, or adjacent read APIs.

## Linked Issues or Issue Description

No public GitHub issue exists for this feature. Feature request summary:

- Problem: Skill authors need to edit and test company skills in one
place instead of switching between the skill detail page, task creation,
run output, and manual prompt history.
- Proposed solution: Add a Skill Studio workbench with saved inputs,
reusable templates, hidden sandboxed test runs, live run status, output
inspection, run history, rerun/delete controls, and frontmatter-aware
editing.
- Expected users: Paperclip operators and agent-company maintainers who
create, fork, import, and tune skills.
- Related public PRs: Supersedes #9205, which was replaced so the public
PR branch name follows contributor policy.
- Duplicate search: searched public GitHub issues and PRs for "Skill
Studio"; no other active public issue or PR directly covers this
feature.

## What Changed

- Added database migrations for Skill Studio test inputs, test runs,
test run retention, and reusable run templates.
- Added shared Skill Studio types, validators, route helpers,
frontmatter utilities, and status handling.
- Added server services and routes for saved inputs, test runs,
templates, reruns, terminal-run deletion, hidden harness issue
execution, and run-detail hydration.
- Strengthened hidden-issue read containment across issue-adjacent
routes and cost rollups used by skill test harness work.
- Added the Skill Studio UI with skill file editing, frontmatter
editing, saved inputs, templates, run creation/cancel/rerun/delete
flows, output rendering, history, route support, and responsive pane
behavior.
- Added focused backend, shared, and UI tests for the new APIs, routing
logic, editor/run behavior, hidden-issue containment, and migration
safety.
- Rebased onto current `master`, removed the generated lockfile diff
from the PR, and verified no workflow files are changed.

## Verification

- [x] `pnpm --filter @paperclipai/db check:migrations`
- [x] `pnpm check:token-gates`
- [x] `pnpm exec vitest run
server/src/__tests__/company-skills-service.test.ts
server/src/__tests__/company-skills-routes.test.ts
server/src/__tests__/company-skill-test-runs-service.test.ts
ui/src/lib/skill-studio.test.ts ui/src/pages/SkillStudio.test.tsx` — 5
files, 132 tests passed
- [x] Greptile review on the latest PR head
- [x] GitHub PR checks on the latest PR head

## Risks

- Medium risk because this is a broad feature touching database schema,
server orchestration, issue visibility, and a large UI surface.
- Hidden harness issue containment is security-sensitive; this PR
includes regression coverage for adjacent read paths and cost rollups.
- The new migrations are additive and use idempotent guards where
applicable, but deployed databases that previously tested draft
migration numbers should still be checked carefully.
- The UI depends on a new resizable panels package in `ui/package.json`;
the lockfile is intentionally left to repository automation.

> For core feature work, check [`ROADMAP.md`](ROADMAP.md) first and
discuss it in `#dev` before opening the PR. Feature PRs that overlap
with planned core work may need to be redirected — check the roadmap
first. See `CONTRIBUTING.md`.

## Model Used

OpenAI Codex, GPT-5 coding agent with shell, git, and GitHub CLI tool
use. Earlier feature commits include assistance from other Paperclip
coding agents; this PR preparation, rebase, cleanup commit, and PR body
were completed by OpenAI Codex in a Paperclip worktree.

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have searched GitHub for duplicate or related PRs and linked
them above
- [x] I have either (a) linked existing issues with `Fixes: #` / `Closes
#` / `Refs #` OR (b) described the issue in-PR following the relevant
issue template
- [x] I have not referenced internal/instance-local Paperclip issues or
links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip`
URLs)
- [x] My branch name describes the change (e.g. `docs/...`, `fix/...`)
and contains no internal Paperclip ticket id or instance-derived details
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [x] All Paperclip CI gates are green
- [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups
- [x] I will address all Greptile and reviewer comments before
requesting merge

---------

Co-authored-by: Paperclip <noreply@paperclip.ing>
Co-authored-by: Claude Opus 4.8 <noreply@anthropic.com>
2026-07-09 13:08:56 -05:00
DottaandPaperclip 1c75a46c10 feat(ui): add waiting-on-live-work blocked notice (#9298)
## Thinking Path

> - Paperclip is the open source app people use to manage AI agents for
work.
> - Operators rely on the issue detail thread to understand whether a
task is blocked, live, or waiting on another task.
> - A blocked issue can have a healthy blocker chain where downstream
work is actively running and the parent will resume automatically.
> - Showing that case with the same amber blocked notice as a stalled or
attention-needed blocker makes the state look more severe than it is.
> - The UI already receives blocker-attention state, blocker summaries,
and company live-run ids, so this can be clarified without a new API
shape.
> - This pull request adds a blue "Waiting on live work" notice for
covered blocker chains while preserving the existing amber notice for
the other blocked states.
> - The benefit is that operators can distinguish healthy queued work
from blocked work that needs intervention.

## Linked Issues or Issue Description

Refs #3820
Refs #8271
Related PR: #3877
Supersedes #9295

## What Changed

- Added a blue `IssueBlockedNotice` variant when
`blockerAttention.state` is `covered` and the blocker chain has live
work.
- Rendered blocker-chain progress as done, running, and queued steps,
including a "Now running" row for live terminal blockers.
- Preserved the existing amber blocked notice for stalled,
attention-needed, ordinary blocked, and successful-run handoff states.
- Plumbed the existing `liveIssueIds`, `blockedBy`, and
`blockerAttention` data from issue detail into the chat-thread blocked
notice.
- Added regression coverage around the covered live-work state, the
no-confirmed-live fallback, numeric step ordering, and amber fallback
states.
- Hardened a low-trust server route test cleanup helper so CI deletes
heartbeat run events before deleting heartbeat runs.

## Verification

- `pnpm check:token-gates`
- `pnpm --filter @paperclipai/ui typecheck`
- `pnpm exec vitest run ui/src/components/IssueBlockedNotice.test.tsx`
- GitHub PR workflow is green on head
`52ab6d9076ce233c183bf7133fa666e8597b6765`.
- Greptile check is green on head
`52ab6d9076ce233c183bf7133fa666e8597b6765` with zero unresolved review
threads.

## Risks

Low runtime risk: the product change is frontend-only and uses data
already returned to the issue detail page. The main risk is visual
regression in the blocked notice; the change keeps non-covered states on
the existing amber path and adds focused regression coverage. The
server-side change is test-only cleanup for an existing CI shard
failure.

> For core feature work, check [`ROADMAP.md`](ROADMAP.md) first and
discuss it in `#dev` before opening the PR. Feature PRs that overlap
with planned core work may need to be redirected — check the roadmap
first. See `CONTRIBUTING.md`.

## Model Used

OpenAI Codex using GPT-5, tool-use enabled in a repository workspace.
The runtime did not expose a more specific model build id or
context-window size.

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have searched GitHub for duplicate or related PRs and linked
them above
- [x] I have either (a) linked existing issues with `Fixes: #` / `Closes
#` / `Refs #` OR (b) described the issue in-PR following the relevant
issue template
- [x] I have not referenced internal/instance-local Paperclip issues or
links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip`
URLs)
- [x] My branch name describes the change (e.g. `docs/...`, `fix/...`)
and contains no internal Paperclip ticket id or instance-derived details
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [x] All Paperclip CI gates are green
- [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups
- [x] I will address all Greptile and reviewer comments before
requesting merge

---------

Co-authored-by: Paperclip <noreply@paperclip.ing>
2026-07-09 10:59:18 -05:00
DottaandPaperclip 97e0752158 Fix work timeline visible stats and kickoff attribution (#9271)
## Thinking Path

> - Paperclip is the open source app people use to manage AI agents for
work
> - The work timeline helps operators understand what agents did, when
they did it, and who kicked off each run
> - Timeline statistics should describe the window the operator is
viewing, not hidden work outside the viewport
> - Kickoff chips should point to the run that was actually closest to
the triggering edge, not stale later runs on the same issue
> - This pull request scopes timeline summary stats to the visible
window and deduplicates kickoff attribution to the nearest matching run
> - The benefit is that operators get a more accurate, less misleading
timeline while scanning agent work

## Linked Issues or Issue Description

No matching public GitHub issue was found. Public duplicate search found
no open PR for "work timeline visible window kickoff".

### What happened?

Work timeline summary stats could count hidden spans outside the
selected visible window, and kickoff attribution could appear on a stale
matching run instead of the closest run associated with the edge.

### Expected behavior

Visible timeline stats should reflect only the current visible range,
and each kickoff edge should attach to the nearest matching run.

### Steps to reproduce

1. View a work timeline with agent spans that begin before or end after
the selected visible window.
2. Compare the summary stats against only the spans visible in the
viewport.
3. View repeated runs for the same actor and issue that share a kickoff
edge.
4. Check which run gets the kickoff chip.

### Paperclip version or commit

Current `origin/master` before this PR.

### Deployment mode

Board UI.

## What Changed

- Filters timeline summary stats to the visible time window.
- Passes visible-window metadata into the work timeline chart and page
state.
- Assigns each kickoff edge to only the closest matching run, with
deterministic tie-breaking.
- Adds focused regression coverage for visible stats and stale kickoff
attribution.

## Verification

- `pnpm exec vitest run
ui/src/components/timeline/WorkTimelineChart.test.tsx
ui/src/lib/timeline/layout.test.ts ui/src/pages/Timeline.test.tsx` -- 38
tests passed.
- `pnpm check:token-gates` -- all gates clean.
- `git diff --check origin/master...HEAD` -- passed.

## Visual Evidence

Public review artifacts for the user-visible timeline behaviours. The
SVGs use sanitized run labels and no internal Paperclip issue
identifiers.

![Visible-window stat panel before and after
scroll](https://gist.githubusercontent.com/cryppadotta/dc2645d54c4bc56ffc0323224b3ea4bf/raw/5f33032ee33035d11334a907ebd5907d92fb3485/visible-window-stats.svg)

![Kickoff attribution before and after stale-chip
fix](https://gist.githubusercontent.com/cryppadotta/dc2645d54c4bc56ffc0323224b3ea4bf/raw/3e0ac8de60b56ff97b0ba48cfe897c0faa161ea9/kickoff-attribution.svg)

Artifact gist:
https://gist.github.com/cryppadotta/dc2645d54c4bc56ffc0323224b3ea4bf

## Risks

- Low risk. The change affects timeline rendering and summary
calculations only; the main risk is a subtle difference in which run
gets a kickoff chip when multiple runs are very close together.

> For core feature work, check [`ROADMAP.md`](ROADMAP.md) first and
discuss it in `#dev` before opening the PR. Feature PRs that overlap
with planned core work may need to be redirected. See `CONTRIBUTING.md`.

## Model Used

OpenAI Codex coding agent based on GPT-5, tool-enabled shell workflow.
Exact hosted model variant and context window were not exposed by the
runtime.

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have searched GitHub for duplicate or related PRs and linked
them above
- [x] I have either (a) linked existing issues with `Fixes: #` / `Closes
#` / `Refs #` OR (b) described the issue in-PR following the relevant
issue template
- [x] I have not referenced internal/instance-local Paperclip issues or
links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip`
URLs)
- [x] My branch name describes the change (e.g. `docs/...`, `fix/...`)
and contains no internal Paperclip ticket id or instance-derived details
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [x] All Paperclip CI gates are green
- [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups
- [x] I will address all Greptile and reviewer comments before
requesting merge

---------

Co-authored-by: Paperclip <noreply@paperclip.ing>
2026-07-09 08:30:46 -05:00
Devin FoleyandPaperclip eedc7ddef2 Make ACP the default engine for local adapters (#9238)
## Thinking Path

> - Paperclip is the open source app people use to manage AI agents for
work.
> - Adapter packages are the bridge between the control plane and local
agent harnesses such as Claude Code, Codex, and Gemini CLI.
> - ACP support was concentrated in a separate `acpx_local` adapter,
which made ACP feel like a separate agent choice instead of an execution
capability of the harness adapters.
> - Claude, Codex, and Gemini now have ACP-capable harnesses, so the
native adapter should own ACP selection, fallback, config, transcript
parsing, and environment diagnostics.
> - The standalone ACPX adapter still needs a compatibility path for
existing rows, but it should not be offered as an active adapter for new
agents.
> - This pull request moves the shared ACP runtime into
`@paperclipai/acpx-engine`, wires Claude/Codex/Gemini local adapters to
prefer ACP when prerequisites are available, and retires `acpx_local` to
a tombstone.
> - The benefit is one adapter per harness, richer ACP transcripts by
default where possible, and a migration path for existing Claude/Codex
ACPX agents.

## Linked Issues or Issue Description

Closes #5932 — the broken default `acpx_local` Claude path is replaced
by native `claude_local` ACP support, existing Claude/Codex ACPX rows
migrate to native adapters, and new agents no longer choose the
standalone ACPX adapter.

Refs #4893 — original merged ACPX local adapter runtime that this PR
replaces with native per-harness ACP engines.
Refs #6590 — prior ACPX-Claude seamlessness work folded into the new
native Claude ACP path.
Refs #197 — related open generic ACP/Kiro adapter work; this PR does not
close it because Kiro/custom generic ACP remains a separate adapter
decision.
Refs #7018 — related Kimi-specific `acpx_local` shell failure; this PR
retires the built-in standalone adapter but does not add a native Kimi
adapter.
Refs #8864 — related ACPX prompt/API guidance PR; this PR moves runtime
guidance into the shared/native ACP engine path instead of the old
standalone adapter.
Refs #8881 — related `acpx_local` POSIX shell failure from the old
`acpx` pin; this PR updates ACP dependencies but does not claim
custom/OMP ACP support as a first-class native adapter.
Refs #8964 — related open `acpx_local` stderr cleanup PR; this PR makes
the old runtime path obsolete for new agents but keeps it as a
non-closing reference.

Problem description:

- The standalone `acpx_local` adapter duplicates Claude/Codex agent
choices that already have first-class local adapters.
- ACP should be an execution engine capability of each harness adapter
when the underlying harness supports ACP.
- Existing `acpx_local` agents should either migrate to native harness
adapters or fail with an explicit retirement message instead of silently
falling back to the process adapter.

## What Changed

- Added `@paperclipai/acpx-engine` as the shared ACP execution,
session-codec, CLI formatter, and UI parser package.
- Wired `claude_local`, `codex_local`, and `gemini_local` to auto-select
ACP by default when prerequisites pass, with `engine=cli` opt-out and
`engine=acp` strict mode.
- Added ACP config schema/UI fields, environment checks, session-codec
preservation, transcript parsing, and adapter capability metadata for
the native adapters.
- Retired `acpx_local` to a server tombstone, removed its
UI/package/runtime image surface, and added a migration for existing
Claude/Codex ACPX agents.
- Updated package manifests, lockfile, release tooling, docs, Kubernetes
sandbox defaults, and tests.

## Verification

- `corepack pnpm --filter @paperclipai/acpx-engine typecheck`
- `corepack pnpm --filter @paperclipai/adapter-claude-local typecheck`
- `corepack pnpm --filter @paperclipai/adapter-codex-local typecheck`
- `corepack pnpm --filter @paperclipai/adapter-gemini-local typecheck`
- `corepack pnpm --filter @paperclipai/acpx-engine exec vitest run`
- `corepack pnpm --filter @paperclipai/adapter-claude-local exec vitest
run src/server/acp.test.ts src/server/execute.acp-fallback.test.ts
src/ui/build-config.test.ts`
- `corepack pnpm --filter @paperclipai/adapter-codex-local exec vitest
run src/server/acp.test.ts src/ui/build-config.test.ts`
- `corepack pnpm --filter @paperclipai/adapter-gemini-local exec vitest
run src/server/acp.test.ts src/ui/build-config.test.ts
src/ui/parse-stdout.test.ts`
- `corepack pnpm --filter @paperclipai/plugin-sdk ensure-build-deps &&
corepack pnpm --filter @paperclipai/server exec tsc --noEmit`
- `corepack pnpm --filter @paperclipai/server exec vitest run
src/__tests__/adapter-routes.test.ts
src/__tests__/adapter-session-codecs.test.ts
src/__tests__/adapter-models.test.ts`
- `corepack pnpm --filter @paperclipai/ui typecheck`
- `corepack pnpm --filter @paperclipai/ui exec vitest run
src/adapters/metadata.test.ts
src/adapters/adapter-display-registry.test.ts
src/components/AgentConfigForm.test.ts
src/components/AgentConfigForm.render.test.tsx
src/components/transcript/RunTranscriptView.test.tsx`
- `node --test scripts/bootstrap-npm-package.test.mjs
scripts/release-package-map.test.mjs
scripts/verify-release-registry-state.test.mjs`

Note: the server typecheck script calls `pnpm` internally; this dev
shell exposes pnpm through Corepack only, so I ran the two script steps
manually with `corepack pnpm`.

## Risks

- Migration changes existing `acpx_local` Claude/Codex agents to native
adapter types and clears old ACPX task sessions/runtime state.
- Custom ACP commands remain on the retired tombstone and will need a
separate future adapter/plugin path.
- ACP auto-selection depends on local Node and ACP server command
prerequisites; remote and unsupported environments fall back to CLI
unless `engine=acp` is explicit.
- `@paperclipai/acpx-engine` is a new public package and needs npm
trusted-publishing bootstrap before release automation can publish it.

> For core feature work, check [`ROADMAP.md`](ROADMAP.md) first and
discuss it in `#dev` before opening the PR. Feature PRs that overlap
with planned core work may need to be redirected — check the roadmap
first. See `CONTRIBUTING.md`.

## Model Used

OpenAI GPT-5 via Codex coding agent. Exact hosted model build and
context-window size are not exposed in this runtime. Tool use included
shell execution, repository editing, GitHub CLI operations, and local
test/typecheck execution.

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have searched GitHub for duplicate or related PRs and linked
them above
- [x] I have either (a) linked existing issues with `Fixes: #` / `Closes
#` / `Refs #` OR (b) described the issue in-PR following the relevant
issue template
- [x] I have not referenced internal/instance-local Paperclip issues or
links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip`
URLs)
- [x] My branch name describes the change (e.g. `docs/...`, `fix/...`)
and contains no internal Paperclip ticket id or instance-derived details
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [x] All Paperclip CI gates are green
- [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups
- [x] I will address all Greptile and reviewer comments before
requesting merge

---------

Co-authored-by: Paperclip <noreply@paperclip.ing>
2026-07-08 19:05:03 -07:00
scotttongandClaude Fable 5 c90e66bdd6 feat(ui): design-system component convergence — Card/Badge adoption, multiplicative radius ladder, unified list surfaces (#9240)
## Thinking Path

> - Paperclip is the open source app people use to manage AI agents for
work
> - Its UI is governed by a design system (`DESIGN.md` + the token layer
in `ui/src/index.css`, merged in #9134) whose first principle is "one
way to say each thing" — one Card, one Badge, one nav row
> - After the token extraction landed, ~35 files still hand-rolled card
containers, ~45 files hand-rolled pill spans, the sidebar agents section
duplicated the nav-row chrome, and the inbox and tasks lists rendered
the same task rows two subtly different ways
> - Each divergence is a place where a future design change (radius,
hover language, status vocabulary) silently misses surfaces, defeating
the "edit tokens + run checks" model the design system exists for
> - This pull request converges those surfaces onto the shared
primitives, codifies the radius scale as the modern multiplicative
shadcn ladder, and unifies the row/hover/tree-guide language across the
inbox and tasks lists — every visible delta was human-reviewed
screen-by-screen against a live instance across nine feedback rounds
> - The benefit is that the app's look is now steerable from single
knobs (one `--radius` anchor, one Card, one Badge, one row component),
and the visual regression suite covers the result (514 snapshots
including a new AgentDetail page story)

## Linked Issues or Issue Description

No public GitHub issue exists for this work; describing per the feature
template:

- **Problem**: after the design-token foundation (#9134),
component-level drift remained — hand-rolled cards/pills, duplicated
sidebar row chrome, and two different renderings of task rows (inbox vs
tasks list) meant design changes had to be applied per-surface and
frequently missed spots (e.g. status glyphs rendered 16px in the inbox
but 20px in the tasks list because a slot override silently beat the
component default).
- **Proposed behavior**: all card-shaped containers render via `Card`,
all label pills via `Badge`, sidebar rows via `SidebarNavItem`, and both
task-list surfaces via one `IssueRow` configuration; the radius scale is
a single multiplicative ladder anchored at `--radius: 0.5rem`.
- **Alternatives considered**: converting interactive
`<button>`/`<Link>` cards to `Card` divs (rejected — breaks semantics;
documented inline with `design-allow` comments instead); keeping the
legacy additive radius ladder (rejected in favor of the standard shadcn
multiplicative mapping).

## What Changed

- `Card` adoption across ~35 files (settings pages, auth/board flows,
dashboards, list containers, KPI tiles); non-adoptable sites
(interactive cards, `<li>` rows, class-string props, chart tooltip)
carry documented `design-allow(card-pattern)` comments
- `Card` gains an `interactive` prop — one quiet hover affordance for
clickable cards (cursor, border darken, shadow lift, focus ring),
applied to skills tiles, artifact cards, and the company selector; cards
carry no resting shadow
- `Badge` adoption for 113 hand-rolled pill spans across ~45 files;
`PropertyChip` wraps `Badge` internally; `StatusBadge`, external-object
chips, and match chips stay bespoke by documented decision (WCAG-tuned
status mechanics)
- Radius ladder becomes the multiplicative shadcn mapping
(`sm/md/lg/xl/2xl/3xl/4xl = 0.6/0.8/1.0/1.4/1.8/2.2/2.6 × --radius`,
anchor `0.5rem`); every card surface unifies on `rounded-lg`; the
orphaned 8px literal token is deleted
- Sidebar: agent rows render via `SidebarNavItem` (new additive props:
`iconNode`, `active`, `trailing`, `liveAccessory`); live dots use
`--status-agent-running`; one row rhythm and inset rounded pill
highlight; right-aligned trailing badges; every labeled section is
collapsible
- Inbox + tasks lists unified: md status glyphs, `accent/50` rounded row
hovers, vertical tree guides under parent rows (opaque underlay so
dark-mode translucent borders don't stack), no horizontal dividers under
expanded parents; the swipe-to-archive reveal layer shows only
mid-swipe; board toggle uses the `SquareKanban` glyph
- Kanban: every column carries a status-hued tint; lanes default
expanded (including empty); compact mode collapses empty lanes to
labeled rails (fixes a clipped, label-less empty-column state)
- Storybook: new AgentDetail page story (realistic fixtures, light+dark)
joins the visual suite; suite captures with `reducedMotion: 'reduce'`
and the ux-lab reasoning ticker honors `prefers-reduced-motion`; a stale
lexical alias in `storybook/main.ts` is fixed (build was broken since
the lexical 0.46 bump)
- Keyboard navigation, from live review of the unified lists: inbox
navigation keys work on every tab (archive keys stay scoped to the
archivable tab); keyboard-driven scrolling no longer hands the selection
to whatever row lands under the stationary cursor (hover selects only
after real pointer movement); the tasks list view gains the same j/k /
arrows / Enter selection model as the inbox; and the `g` then `i`
go-to-inbox chord works app-wide instead of only on the issue detail
page
- Token gates restored to 3/3 CLEAN (tokenized a post-#9134 regression
in the recovery card); decisions recorded in
`doc/design/DECISION-SHEET.md` and `doc/design/COMPONENT-INVENTORY.md`
(investigation verdicts: FileTree vs WorkspaceFileBrowser and the four
entity pickers stay separate — evidence included)

## Verification

- `pnpm check:token-gates` → 3/3 CLEAN
- `pnpm typecheck` → green (all packages)
- `cd ui && npx vitest run` → 2106/2106 (assertions updated in lockstep
where they documented superseded decisions; new tests for the global
go-to-inbox chord)
- `pnpm --filter @paperclipai/ui build` → exit 0
- `pnpm build-storybook` → succeeds (also fixes the lexical-alias break
on master)
- Visual regression: 514-snapshot Playwright suite green against the
updated baseline (zero diffs from the keyboard-navigation round — those
changes are purely behavioral). Note: baselines live outside git per the
suite design and the baseline-manifest archive is not yet published, so
CI cannot run this suite — it was run locally throughout; every visible
delta was reviewed screen-by-screen in a live instance across nine
review rounds. Review evidence (before/after triplets) intentionally
kept out of the repo for size; available on request.
- Manual: exercised dashboard, tasks (list + board), inbox, agents,
skills, costs, settings, and artifact surfaces in light and dark themes

## Risks

- Wide but shallow visual surface: most changes are class-string
substitutions with behavior preserved (props, handlers, roles, test
ids). The riskiest areas — dnd-kit card refs (React 19 ref-as-prop),
inbox swipe-to-archive, and sidebar overlays — are covered by existing
unit tests (all green) and were manually exercised.
- Intentional visual deltas (rounded cards, tinted kanban columns, md
status glyphs, unified hovers) are design decisions recorded in
`doc/design/DECISION-SHEET.md`; each maps to a re-baselined snapshot set
locally.
- The visual suite cannot yet run in CI (unpublished baseline archive —
pre-existing condition from #9134); until that lands, snapshot coverage
is local-only.

## Model Used

- Claude Fable 5 (`claude-fable-5`, Anthropic) via Claude Code — agentic
coding with tool use (file editing, test execution, Playwright
screenshot verification); extended thinking enabled.

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have searched GitHub for duplicate or related PRs and linked
them above
- [x] I have either (a) linked existing issues with `Fixes: #` / `Closes
#` / `Refs #` OR (b) described the issue in-PR following the relevant
issue template
- [x] I have not referenced internal/instance-local Paperclip issues or
links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip`
URLs)
- [x] My branch name describes the change (e.g. `docs/...`, `fix/...`)
and contains no internal Paperclip ticket id or instance-derived details
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [ ] All Paperclip CI gates are green (will confirm once CI runs)
- [ ] Greptile is 5/5 with no open P2s, recommendations, or follow-ups
(pending first review)
- [x] I will address all Greptile and reviewer comments before
requesting merge

🤖 Generated with [Claude Code](https://claude.com/claude-code)

---------

Co-authored-by: Claude Fable 5 <noreply@anthropic.com>
2026-07-08 17:15:45 -07:00
Dotta 4a7a732476 feat(skills): add company skill fork prechecks (#9235)
Adds company skill fork precheck metadata, fork result/reassignment contracts, selected-agent reassignment during fork creation, and targeted server/shared test coverage.
2026-07-08 14:22:39 -05:00
DottaandPaperclip 562567fcd6 [codex] Improve work timeline activity story (#9222)
## Thinking Path

> - Paperclip is the open source app people use to manage AI agents for
work.
> - The work timeline helps operators understand when agent and user
activity actually happened across a project.
> - The timeline view needs clearer interaction context so activity is
easier to inspect and reason about.
> - The existing story coverage did not fully exercise the denser
activity states needed to review this UI safely.
> - This pull request expands the work timeline data shape, service
behavior, UI rendering, tests, and Storybook story so the activity
timeline is easier to verify.
> - The benefit is a more inspectable timeline for project activity,
backed by targeted server and UI coverage.

## Linked Issues or Issue Description

No public GitHub issue found, so this PR describes the feature inline
following the feature request template.

**Subsystem affected**

Cross-cutting: `server/`, `packages/shared`, and `ui/`.

**Problem or motivation**

Project operators need a clearer timeline view that shows when work
activity happened, how much agent time is represented inside the
selected window, and enough realistic activity states for safe visual
review. Sparse mock data and unbounded summary calculations make it
harder to trust the timeline when inspecting historical or capped
windows.

**Proposed solution**

Enrich the work timeline activity data returned by the service, render
clearer top-level timeline summary stats, clamp duration calculations to
the returned window, prorate token totals for partially visible spans,
and add Storybook/test coverage with realistic timeline activity data.

**Alternatives considered**

Keeping the existing sparse timeline story was considered, but it would
leave dense activity layouts and selected-window summary behavior
under-reviewed. Counting full span usage for partially visible spans was
also considered, but it makes historical windows report activity outside
the displayed range.

**Roadmap alignment**

Searched `ROADMAP.md` for timeline/activity references and found no
conflicting planned core work.

**Additional context**

This PR does not include migrations and does not commit generated design
screenshots or images.

## What Changed

- Extended shared work timeline activity types and server timeline
service behavior.
- Updated the timeline page and work timeline chart for richer activity
rendering.
- Clamped timeline runtime summary calculations to the returned window
and prorated summary token usage for clipped spans.
- Added and updated targeted server/UI tests for timeline activity
behavior.
- Added Storybook timeline mock coverage and Storybook preview setup
needed by the story.

## Verification

- `git rebase origin/master` completed cleanly after fetching
`paperclipai/paperclip:master`.
- `git diff --check origin/master...HEAD`
- `pnpm exec vitest run
server/src/__tests__/work-timeline-service.test.ts
ui/src/components/timeline/WorkTimelineChart.test.tsx
ui/src/pages/Timeline.test.tsx` — latest run: 3 files passed, 28 tests
passed.
- Greptile review completed at 5/5 with no unresolved Greptile threads
after fixes.
- GitHub checks completed green on the latest head SHA; Storybook visual
regression was skipped by the workflow.
- `pnpm check:token-gates` currently fails locally on existing
`origin/master` violations in `ui/src/components/ActivityCharts.tsx` and
`ui/src/components/IssueRecoveryActionCard.tsx`; this PR does not modify
those files.

## Risks

Low to moderate risk. The change affects the work timeline service
response shape and timeline UI rendering, so regressions would likely
show up as missing/incorrect timeline activity display. Targeted service
and UI tests cover the changed behavior. No migrations are included.

## Model Used

OpenAI Codex running GPT-5 as a tool-enabled coding agent with local
shell and GitHub CLI access. Exact runtime model ID/context-window size
was not exposed by the environment.

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have searched GitHub for duplicate or related PRs and linked
them above
- [x] I have either (a) linked existing issues with `Fixes: #` / `Closes
#` / `Refs #` OR (b) described the issue in-PR following the relevant
issue template
- [x] I have not referenced internal/instance-local Paperclip issues or
links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip`
URLs)
- [x] My branch name describes the change (e.g. `docs/...`, `fix/...`)
and contains no internal Paperclip ticket id or instance-derived details
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [x] All Paperclip CI gates are green
- [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups
- [x] I will address all Greptile and reviewer comments before
requesting merge

---------

Co-authored-by: Paperclip <noreply@paperclip.ing>
2026-07-08 08:59:24 -05:00
DottaandPaperclip 5d0de3499d [codex] Fix collapsed starred project indentation (#9215)
## Thinking Path

> - Paperclip is the open source app people use to manage AI agents for
work.
> - The board sidebar is a high-frequency navigation surface for
companies, projects, and work queues.
> - Starred projects render as child rows under Projects in the expanded
sidebar.
> - The collapsed rail should align every nav icon in the same rail
column.
> - The starred-project child indent was still applied in the collapsed
rail, which pushed the project glyph out of alignment.
> - This pull request keeps the expanded hierarchy indent while removing
it only for the collapsed rail.
> - The benefit is a cleaner collapsed sidebar without changing expanded
sidebar hierarchy.

## Linked Issues or Issue Description

No public GitHub issue exists.

## What happened?

In the collapsed sidebar rail, starred project rows kept the expanded
child indentation. That pushed the project glyph out of alignment with
the rest of the collapsed sidebar icons.

## Expected behavior

Collapsed starred project icons should align with the other sidebar rail
icons while the expanded sidebar should keep the child-row indentation
under Projects.

## Steps to reproduce

1. Open Paperclip with at least one starred project.
2. Collapse the sidebar into rail mode.
3. Compare the starred project glyph position with the other collapsed
sidebar glyphs.

## Paperclip version or commit

Reproduced on the PR base before this branch; fixed on commit
e57d14343d with CI cleanup on commit
12aafe8959.

## Deployment mode

Local dev (`pnpm dev`).

## What Changed

- Applies the starred-project left padding only when the sidebar is not
in rail mode.
- Adds a regression test covering expanded and collapsed starred-project
rendering.
- Makes the heartbeat worktree suppression test cleanup tolerate late
heartbeat run events before deleting heartbeat runs.

## Verification

- Passed: `pnpm exec vitest run
ui/src/components/SidebarStarredProjects.test.tsx`
- Passed: `pnpm exec vitest run
server/src/__tests__/heartbeat-worktree-suppression.test.ts`
- Passed: PR #9215 latest-head GitHub checks on commit
`12aafe8959351826038baf0c1e401fb44913c67c`
- Passed: Greptile 5/5 with no inline comments or unresolved review
threads on commit `12aafe8959351826038baf0c1e401fb44913c67c`
- Known existing baseline failure: `pnpm check:token-gates` reports
violations in `ui/src/components/ActivityCharts.tsx` and
`ui/src/components/IssueRecoveryActionCard.tsx`, which this PR does not
touch.

## Risks

Low risk. The UI change adjusts one conditional class on starred project
links and preserves the expanded sidebar layout. The server test change
is cleanup-only and does not alter production behavior.

## Model Used

OpenAI GPT-5 Codex coding agent with local command execution and
repository editing tools.

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have searched GitHub for duplicate or related PRs and linked
them above
- [x] I have either (a) linked existing issues with `Fixes: #` / `Closes
#` / `Refs #` OR (b) described the issue in-PR following the relevant
issue template
- [x] I have not referenced internal/instance-local Paperclip issues or
links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip`
URLs)
- [x] My branch name describes the change (e.g. `docs/...`, `fix/...`)
and contains no internal Paperclip ticket id or instance-derived details
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [x] All Paperclip CI gates are green
- [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups
- [x] I will address all Greptile and reviewer comments before
requesting merge

---------

Co-authored-by: Paperclip <noreply@paperclip.ing>
2026-07-08 07:19:40 -05:00
DottaandPaperclip 555391fed7 fix: run restart recovery, workspace self-heal, quota-aware retries, failed-run metrics (#9183)
## Thinking Path

> - Paperclip is the open source app people use to manage AI agents for
work
> - Agents run in heartbeat runs orchestrated by the server; run
lifecycle, retry scheduling, and the dashboard's run-activity metrics
are the subsystems involved
> - A spike in "failed" tasks traced to three causes: server restarts
killing in-flight runs and mislabeling them as failures, deterministic
workspace-validation loops when a worktree's branch diverged, and
provider quota/usage-limit errors being classified as generic transient
failures (putting agents into error state and polluting metrics)
> - Killed-then-recovered runs and quota waits are not product failures,
so both the runtime behavior and the reporting needed to distinguish
them
> - This pull request drains runs gracefully on shutdown with idempotent
restart retries, self-heals workspace branch mismatches, adds a
quota-aware failure class with reset-time retry, separates recovered
restart kills from true failures on the dashboard, and documents restart
hygiene for operators
> - The benefit is fewer spurious failures, automatic recovery instead
of manual repair, and dashboard metrics that reflect real failure rates

## Linked Issues or Issue Description

No public GitHub issue exists; describing the bug inline per the
bug-report template:

**What happened?**

In-flight heartbeat runs are marked `failed` when the server restarts,
even though a retry later succeeds. Worktrees whose checked-out branch
diverges from the issue branch fail workspace validation on every
subsequent run with no recovery path. Provider quota/usage-limit
responses are treated as generic transient upstream errors, putting
agents into an error state and retrying before the quota window resets.
The dashboard counts all of these as true failures, inflating failure
metrics.

**Expected behavior**

Graceful shutdown should interrupt (not fail) running runs and chain
exactly one recovery retry. Workspace validation should repair
recoverable branch mismatches automatically. Quota errors should get
their own error class with the retry scheduled at the provider reset
time and the agent left idle. The dashboard should report recovered
restart kills separately from true failures.

**Steps to reproduce**

1. Start a heartbeat run, then restart the server (SIGTERM) while it is
in flight — the run lands as `failed` with a process-loss error code
even when its retry succeeds
2. Check out an issue whose worktree branch has diverged (e.g. after a
force-moved branch) — every subsequent run fails
`workspace_validation_failed` deterministically
3. Drive an agent into a provider usage-limit window — the run fails as
a generic transient upstream error and the agent enters an error state
instead of idling until the reset time

**Paperclip version or commit**

master (base c07e650cd)

**Deployment mode**

Self-hosted dev plane (Linux, node server + embedded Postgres)

## What Changed

- Graceful shutdown (SIGTERM hook) now marks in-flight runs
`interrupted` instead of `failed` and enqueues an idempotent
process-loss retry (pre-insert existence check on `retryOfRunId`
prevents duplicates; bursts chain exactly one retry per interrupted run)
- Run-liveness classification routes `interrupted` to `needs_followup`
rather than `failed`
- Workspace validation self-heals branch mismatch / missing-branch
states instead of failing deterministically on every run
- New `provider_quota` error class: session/usage-limit responses
schedule the retry at the provider reset time and leave the agent idle
(not errored); fixes a case where a quota-terminated run with subtype
`success` was misclassified as failed; HTTP 529 remains transient
- Dashboard run-activity query separates recovered restart kills from
true failures via a recursive CTE over `retry_of_run_id` (ancestors of a
succeeded retry count as recovered), adds a per-day failed-by-error-code
breakdown, and binds the window start as a timestamptz string
- Activity charts UI: amber "Recovered" segment with legend and per-day
error-code tooltip; success-rate chart counts recovered runs as
successes
- New ops runbook: `docs/deploy/dev-plane-restart-hygiene.md`

## Verification

- Greptile follow-up fixes on `992705edd`: `pnpm exec vitest run
server/src/__tests__/server-startup-feedback-export.test.ts
server/src/__tests__/heartbeat-workspace-branch-containment.test.ts
server/src/__tests__/heartbeat-workspace-session.test.ts
server/src/__tests__/heartbeat-process-recovery.test.ts
server/src/__tests__/heartbeat-workspace-finalize-branch.test.ts` (209
tests); `pnpm --filter @paperclipai/server typecheck`; `git diff
--check`
- Post-rebase CI fixes: `pnpm exec vitest run
server/src/__tests__/heartbeat-retry-scheduling.test.ts`; `pnpm exec
vitest run server/src/__tests__/heartbeat-retry-scheduling.test.ts
server/src/__tests__/workspace-runtime.test.ts
server/src/__tests__/heartbeat-workspace-branch-containment.test.ts
server/src/__tests__/heartbeat-workspace-finalize-branch.test.ts
server/src/__tests__/heartbeat-workspace-session.test.ts` (227 tests);
`pnpm --filter @paperclipai/server typecheck`
- `npm test` server suites covering the changes:
`heartbeat-process-recovery`, `heartbeat-stop-metadata`,
`heartbeat-retry-scheduling` (95 tests), quota parse +
execute/retry-scheduling suites (100 tests), workspace self-heal suites
(200 tests), dashboard run-activity tests (3 tests) — all green,
typecheck exit 0
- Dashboard CTE cross-checked against a real development database: two
restart-burst days moved from 17 to 8 and 19 to 6 true failures once
recovered kills were separated, matching manual retry-chain inspection
- Screenshot verification of the real ActivityCharts component
(recovered segment + tooltip) during QA

## Risks

- Behavioral shift: runs killed by a restart no longer surface as
`failed`; anyone consuming raw run statuses will see `interrupted` (new
status value) — dashboards/queries in this repo were updated accordingly
- Retry chaining on repeated restarts is bounded (one chained retry per
interruption) but a pathological restart loop still delays work rather
than failing it; the runbook covers operator hygiene for that case
- Dashboard query adds a recursive CTE; cost is bounded by the
day-window row count and was verified against production-sized data
- No schema migrations; low migration risk

## Model Used

- Claude (Anthropic) — claude-fable-5 via Claude Code / Paperclip agent
harness, extended thinking with tool use; implementation commits also
produced with Codex CLI (GPT-5 class) agents under the same harness

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have searched GitHub for duplicate or related PRs and linked
them above
- [x] I have either (a) linked existing issues with `Fixes: #` / `Closes
#` / `Refs #` OR (b) described the issue in-PR following the relevant
issue template
- [x] I have not referenced internal/instance-local Paperclip issues or
links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip`
URLs)
- [ ] My branch name describes the change (e.g. `docs/...`, `fix/...`)
and contains no internal Paperclip ticket id or instance-derived details
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [x] All Paperclip CI gates are green
- [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups
- [x] I will address all Greptile and reviewer comments before
requesting merge

---------

Co-authored-by: Paperclip <noreply@paperclip.ing>
2026-07-07 20:30:09 -05:00
Nicky LeachandPaperclip 4f5abf6007 feat(recovery-card): W7 reconcile-forward + break-glass actions
Adds the task-page recovery affordance for workspace branch divergence: reconcile-forward when ancestry is safe, and a break-glass override flow that requires explicit confirmation and a reason.

Includes client wiring for the existing reconcile-branch endpoint, issue-detail refresh after successful reconciliation, runtime-management gating for break-glass, and tests for action visibility, payloads, permission gating, and workspace-target selection.

Co-Authored-By: Paperclip <noreply@paperclip.ing>
2026-07-07 15:17:16 -07:00
Dotta 83f5f59842 [codex] Hide goals sidebar link behind experiment (#9189)
## Thinking Path

> - Paperclip is the open source app people use to manage AI agents for
work.
> - The board sidebar is the primary navigation surface for operators
scanning companies, projects, tasks, agents, and related control-plane
tools.
> - Goals still has a route and product surface, but keeping the
top-level sidebar link always visible makes it part of the default
navigation whether or not that surface is ready for every operator.
> - Instance experimental settings already provide a controlled place to
expose optional UI surfaces while they are being evaluated.
> - This pull request adds a dedicated experimental setting for
restoring the Goals sidebar link.
> - The benefit is a quieter default sidebar with an explicit escape
hatch for operators who still need the Goals entry point.

## Linked Issues or Issue Description

No public GitHub issue exists for this internal task, so the feature
request is described inline.

**Subsystem affected**
Cross-cutting: `ui/`, `server/`, and `packages/shared`.

**Problem or motivation**
The Goals route remains available, but the top-level Goals sidebar entry
makes that surface part of the default operator navigation. While the
goals surface is still being evaluated, operators need a quieter default
sidebar without losing an escape hatch for teams that still rely on the
link.

**Proposed solution**
Add a boolean instance experimental setting, `enableGoalsSidebarLink`,
default it to `false`, and render the Goals sidebar link only when the
setting is enabled. Expose the toggle in Instance Experimental Settings
so operators can restore the link without changing routes or rebuilding
the app.

**Alternatives considered**
- Remove the Goals route entirely: rejected because this task only asks
to hide the sidebar entry point and preserve access for teams evaluating
goals.
- Keep the sidebar link always visible: rejected because it does not
provide the requested quieter default navigation.
- Hard-code a local UI flag: rejected because instance experimental
settings already provide the expected operator-controlled pattern.

**Roadmap alignment**
Checked `ROADMAP.md`; no overlapping goals/sidebar/experimental roadmap
entry was found.

**Additional context**
The `/goals` route is preserved. This PR only gates the sidebar
navigation item.

## What Changed

- Added `enableGoalsSidebarLink` to the shared instance experimental
settings type and validator, defaulting to `false`.
- Normalized the new setting in the server instance settings service.
- Hid the Goals sidebar nav item unless the new setting is enabled.
- Added a Goals Sidebar Link toggle to the Instance Experimental
Settings page.
- Updated shared, server, sidebar, and settings page tests for the new
setting.

## Verification

- `pnpm exec vitest run packages/shared/src/validators/instance.test.ts
server/src/__tests__/instance-settings-service.test.ts
server/src/__tests__/instance-settings-routes.test.ts
ui/src/components/Sidebar.test.tsx
ui/src/pages/InstanceExperimentalSettings.test.tsx`
- `git diff --check origin/master...HEAD`
- `git merge-tree --write-tree HEAD origin/master`
- Searched for duplicate/related PRs by title and
`enableGoalsSidebarLink`; none found.
- Checked `ROADMAP.md` for overlapping goals/sidebar/experimental
entries; none found.

## Risks

Low risk. The main behavior shift is that operators who depended on the
sidebar Goals link need to enable the new experimental toggle. The
`/goals` route itself is not removed.

> For core feature work, check [`ROADMAP.md`](ROADMAP.md) first and
discuss it in `#dev` before opening the PR. Feature PRs that overlap
with planned core work may need to be redirected — check the roadmap
first. See `CONTRIBUTING.md`.

## Model Used

OpenAI Codex, GPT-5-based Paperclip CodexCoder session with repository
tool access and command execution. Exact API model identifier and
context window were not exposed by the Paperclip harness.

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have searched GitHub for duplicate or related PRs and linked
them above
- [x] I have either (a) linked existing issues with `Fixes: #` / `Closes
#` / `Refs #` OR (b) described the issue in-PR following the relevant
issue template
- [x] I have not referenced internal/instance-local Paperclip issues or
links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip`
URLs)
- [x] My branch name describes the change (e.g. `docs/...`, `fix/...`)
and contains no internal Paperclip ticket id or instance-derived details
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [x] All Paperclip CI gates are green
- [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups
- [x] I will address all Greptile and reviewer comments before
requesting merge
2026-07-07 16:48:33 -05:00
c07e650cd7 feat(ui): single-source design tokens, visual regression suite, and theme retune (#9134)
## Thinking Path

> - Paperclip is the open source app people use to manage AI agents for
work
> - Its UI is the operator's daily surface: task lists, boards, budgets,
agent status — all built on shadcn components and Tailwind
> - Visual values (colors, spacing, type sizes, radii) were hardcoded at
~1,600 call sites: the same "small gray label" was 9/10/11px depending
on the file, charts disagreed with chips about status colors, two
toggle-switch implementations coexisted in two greens, and there was no
visual regression coverage
> - This made the UI drift-prone and made any restyle a
hundreds-of-files project, which discourages design iteration
> - This pull request extracts visual values into a single token layer
in `ui/src/index.css`, adds a Storybook visual regression suite backed
by external immutable baseline archives, and then applies a deliberate
retune reviewed change-by-change on screenshot diffs
> - The benefit is that Paperclip's look becomes a config surface:
retheming is a token edit reviewed as a snapshot diff, drift is blocked
by a token gate, and future UI PRs can prove exactly what changed
visually without committing hundreds of PNGs

## Linked Issues or Issue Description

No existing public issue covers this work (searched "design tokens",
"visual regression", "design system" across issues and PRs). Related in
spirit: Refs #8982 (theming a hardcoded panel — a one-off instance of
the same problem class this PR addresses systematically).

**Problem (feature-request form):** UI visual values are hardcoded per
call site with no source of truth and no regression coverage;
consistency depends on reviewer memory, and restyling requires mass file
edits.
**Proposed solution (this PR):** a single token layer + enforcement gate
+ externally stored visual snapshot suite, then an intentional restyle
on top of that foundation.

## What Changed

- **Token extraction (zero visual change, machine-verified during
development):** committed codemods (`scripts/codemod-*.mjs`) moved
~1,600 hardcoded color/type/spacing/radius/shadow/misc values into named
tokens in a non-inline `:root` block of `ui/src/index.css`.
- **Visual regression suite:** `pnpm test:storybook-visual` covers 255
stories × light/dark = 510 Playwright screenshots at `maxDiffPixels: 0`,
plus new primitive-coverage stories and deterministic-render fixes.
- **External visual baselines:** committed PNG snapshots were removed.
`tests/storybook-visual/baseline-manifest.json` pins an immutable
archive URL/hash/size/count, and `scripts/storybook-visual-baseline.mjs`
handles `download`, `verify`, `pack`, and trusted maintainer `upload`
flows.
- **Opt-in visual CI artifacts:** added a `Storybook Visual` workflow
that runs on manual dispatch or PRs labeled `storybook-visual`,
downloads/verifies the baseline, runs Playwright, and uploads Playwright
report/test-result artifacts for review. Normal PR runs do not mutate
baseline objects.
- **Token gate:** `pnpm check:token-gates` — zero hex literals, zero
arbitrary bracket values, zero raw font-sizes in `ui/src/components/**`
and `ui/src/pages/**`, with a documented inline allowlist for legitimate
opt-outs.
- **Theme retune (intentional, snapshot-reviewed):** new base theme
values; radius ladder derived from a single `--radius` knob; micro-type
cluster collapsed to a named ladder (`--text-nano/micro/compact` +
Tailwind `text-xs`/`text-sm`); letter-spacing collapsed to named steps.
- **One status-color vocabulary:** charts, quota/budget bar fills,
RUNNING/live chips, and liveness indicators all use the canonical
`--status-*` hues. Light-mode legibility fixes for red alert surfaces
that used dark-tuned text classes.
- **One switch:** `ToggleSwitch` restyled to the registry capsule form,
second hand-rolled implementation removed, and all call sites unified.
- **Docs:** `DESIGN.md` is the design contract; `doc/design/` holds
audit reports, decision logs, and updated guidance for external baseline
review/update workflows.
- Dead code removed (`agentStatusBadge` duplicate map), byte-identical
contrast constants consolidated, semantic renames
(`--project-seed`/`--project-none`, `--liveness-blue`).

## Verification

- `pnpm check:token-gates` — 3/3 gates CLEAN during the design-system
run
- `pnpm typecheck` && `pnpm --filter @paperclipai/ui build` — green
during the design-system run
- `node --test scripts/__tests__/storybook-visual-baseline.test.mjs` —
pass after external-baseline rework
- `pnpm exec tsc --noEmit --pretty false --module NodeNext
--moduleResolution NodeNext --target ES2022 --types
node,@playwright/test tests/storybook-visual/playwright.config.ts
tests/storybook-visual/storybook-visual.spec.ts` — pass after
external-baseline rework
- `git diff --check origin/pr/9134..HEAD` — pass after external-baseline
rework
- `find tests/storybook-visual -type f -name '*.png' -print | wc -l` —
`0`
- `node scripts/storybook-visual-baseline.mjs verify` — intentionally
fails closed until the first trusted maintainer publishes the baseline
archive and updates `baseline-manifest.json`

## Risks

- **Large but shallow:** the PR still touches many UI files due to
mechanical token extraction and retune work, but committed PNG snapshot
churn has been removed from the branch.
- **Baseline publication required before the visual suite can pass in
clean clones:** the manifest currently has placeholder archive metadata.
A trusted maintainer must publish the first immutable archive, then
update `baseline-manifest.json`.
- **Rendering platform variance:** the external baseline should be
captured in the documented Linux/Chromium environment. Future CI runs
verify against the pinned archive and fail closed on checksum/count
mismatch.
- **Visual CI is opt-in while stabilizing:** add the `storybook-visual`
label or dispatch the workflow manually to produce downloadable
Playwright report/test-result artifacts.
- **Scheduled follow-ups, deliberately out of scope:** Tailwind palette
classes map to semantic tokens in a dedicated pass; card/pill component
consolidation; ESLint ratchet. Tracked in
`doc/design/DECISION-SHEET.md`.

## Model Used

Claude Fable 5 (Anthropic, `claude-fable-5`, Mythos-class tier) with
extended thinking, running in Claude Code with tool use; mechanical
phases delegated to Claude Sonnet subagents. Follow-up external-baseline
rework assisted by OpenAI Codex (`gpt-5` coding agent with repository,
terminal, and GitHub tool use). All bulk rewrites executed via
deterministic, idempotent scripts committed in `scripts/`; intentional
visual changes were human-reviewed on screenshot contact sheets.

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have searched GitHub for duplicate or related PRs and linked
them above
- [x] I have either (a) linked existing issues with `Fixes: #` / `Closes
#` / `Refs #` OR (b) described the issue in-PR following the relevant
issue template
- [x] I have not referenced internal/instance-local Paperclip issues or
links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip`
URLs)
- [x] My branch name describes the change (e.g. `docs/...`, `fix/...`)
and contains no internal Paperclip ticket id or instance-derived details
- [x] I have run targeted local verification and documented the
intentional baseline-publication failure above
- [x] I have added or updated tests where applicable
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [ ] All Paperclip CI gates are green *(pending new CI run after this
rework)*
- [ ] Greptile is 5/5 with no open P2s, recommendations, or follow-ups
*(pending review)*
- [x] I will address all Greptile and reviewer comments before
requesting merge

🤖 Generated with [Claude Code](https://claude.com/claude-code) and
OpenAI Codex

---------

Co-authored-by: Claude Fable 5 <noreply@anthropic.com>
Co-authored-by: Dotta <bippadotta@protonmail.com>
Co-authored-by: Paperclip <noreply@paperclip.ing>
2026-07-07 16:22:16 -05:00
DottaandPaperclip 329b229591 Fix annotation selection in routine editor (#9182)
## Thinking Path

> - Paperclip is the open source app people use to manage AI agents for
work.
> - The issue and routine editor surfaces share document annotation
behavior for commentable text.
> - The annotation layer currently observes document selections inside
its container and converts those selections into pending comment
anchors.
> - Routine editor fields can live inside that same annotated document
container while still needing normal native text selection behavior.
> - When a user selects text inside an editable routine field, the
annotation layer should leave that selection alone instead of preparing
a comment.
> - This pull request teaches the annotation layer to ignore selections
touching editable controls and covers that case with focused component
tests.
> - The benefit is that routine editing remains editable text UX, while
document annotation selection continues to work for normal read-only
document text.

## Linked Issues or Issue Description

No public GitHub issue exists for this bug. Inline bug report follows.

### Pre-submission checklist

- [x] I have searched existing open and closed issues and this is not a
duplicate.
- [x] I am on current `master` for this PR branch.
- [x] I have confirmed the error originates in Paperclip itself, not in
an agent adapter, API provider, or local configuration.

### What happened?

Selecting text inside an editable routine field could be interpreted as
a document annotation selection. That meant the annotation layer could
prepare a pending comment anchor or show annotation affordances while
the user was just selecting text to edit routine content.

### Expected behavior

Editable controls should keep native text selection behavior. Selecting
text inside `input`, `textarea`, `select`, or contenteditable routine
editor regions should not build a document annotation anchor or show the
document annotation toolbar.

### Steps to reproduce

1. Render document annotation behavior around a document/editor
container that also contains an editable routine text region.
2. Select text inside the editable region.
3. Observe that the document annotation layer treats the selection as
commentable text instead of ignoring it.

### Paperclip version or commit

Reproduced and fixed against `master` at `5356b7d73`, with PR head
`4f53f83f1`.

### Deployment mode

Local dev / component test environment.

### Installation method

Built from source.

### Agent adapter(s) involved

Not adapter-specific; core UI behavior.

### Database mode

Not database-related.

### Access context

Board / human operator UI behavior.

### Relevant logs or output

No runtime logs. Regression coverage is in
`ui/src/components/DocumentAnnotationLayer.test.tsx`.

### Relevant config

Not applicable.

### Additional context

Root cause: `DocumentAnnotationLayer` filtered selections by container
membership, but did not exclude editable controls or all valid
contenteditable hosts before building a pending annotation anchor.

### Privacy checklist

- [x] I have reviewed all pasted output for PII and redacted where
necessary.

## What Changed

- Added an editable-selection guard in `DocumentAnnotationLayer` that
ignores selections touching `input`, `textarea`, `select`, or
contenteditable elements.
- Covered both `contenteditable="true"` and bare/empty `contenteditable`
hosts so routine editor selections do not build annotation anchors.
- Added focused regression tests proving editable selections do not call
the annotation anchor helpers or show the annotation toolbar.

## Verification

- `pnpm vitest run ui/src/components/DocumentAnnotationLayer.test.tsx`
- `git diff --check`
- GitHub PR checks are green for head `4f53f83f1`, including policy,
review, typecheck/release registry, build, general tests, serialized
suites, e2e, canary dry run, security checks, and Greptile.

## Risks

Low risk. The change only narrows annotation capture when a selection
touches an editable element inside the annotation container. Normal
read-only document annotation selections still use the existing
anchor-building path.

> For core feature work, check [`ROADMAP.md`](ROADMAP.md) first and
discuss it in `#dev` before opening the PR. Feature PRs that overlap
with planned core work may need to be redirected — check the roadmap
first. See `CONTRIBUTING.md`.

## Model Used

OpenAI Codex coding agent based on GPT-5, with shell, Git, Vitest, and
GitHub connector/CLI tool use. The exact hosted runtime model identifier
is not exposed in this session.

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have searched GitHub for duplicate or related PRs and linked
them above
- [x] I have either (a) linked existing issues with `Fixes: #` / `Closes
#` / `Refs #` OR (b) described the issue in-PR following the relevant
issue template
- [x] I have not referenced internal/instance-local Paperclip issues or
links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip`
URLs)
- [x] My branch name describes the change (e.g. `docs/...`, `fix/...`)
and contains no internal Paperclip ticket id or instance-derived details
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [x] All Paperclip CI gates are green
- [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups
- [x] I will address all Greptile and reviewer comments before
requesting merge

---------

Co-authored-by: Paperclip <noreply@paperclip.ing>
2026-07-07 15:17:38 -05:00
Nicky Leach 2ef70c3673 build(deps): upgrade lexical family to 0.46.0 and pin via overrides (fixes dual-version getType crash) (#9180) 2026-07-07 13:00:26 -07:00