Commit Graph
1930 Commits
Author SHA1 Message Date
Devin FoleyandPaperclip cd8c9cd07c Merge master and check registered failover cursors
Use the registered controller state when checkpoint persistence replaces the local journal with an external marker. The new regression follows registration and real checkpoint conversion before remote preparation, reproducing the stale-copy bypass on the prior guard. Current backups retain the existing integrity checks. Resolve the workflow fixture conflict by keeping each normal-route input once.

Verified 1,192 native session/execution-driver tests, ten workflow checks, fresh server declarations and the workflow project typecheck. Maintained preflight, module boundaries, whitespace and secrets/PII checks pass. Fresh CI and exact-head Apex review remain required.

Co-Authored-By: Paperclip <noreply@paperclip.ing>
2026-11-06 13:23:39 -08:00
DottaandClaude Opus 5.5 da9a4cb96c fix(native): retire a finished local Runner that stopped before suspending (#19597)
## Thinking Path

> - Paperclip is the open source app people use to manage AI agents for
work
> - The native Runner path runs each per-turn agent turn through a
runnerd process, and the next turn must prove that the previous Runner
is finished before it takes over the saved session root
> - Under load, a local turn can have its result accepted while its
`runner.suspend` command does not finish, so the Runner's own receipt
stays unsuspended
> - The retirement proof that handles the same case for sandbox Runners
refused every local Runner with `target_not_sandbox_runner`
> - So the next turn failed with `runner_state_identity_mismatch:
prior_owner_terminal_state_indeterminate` and its session root was
quarantined
> - This pull request extends the retirement to a local Runner when the
prior Runner process is proven stopped by exact PID and start time
> - The benefit is that a follow-up turn (for example, after a user
answers a question) continues instead of failing

## Linked Issues or Issue Description

Refs #19525 (keeps the accepted result in the same incident; this is the
next run).

**What happened?**

In the runner E2E cell
`local-session-integrity.runner-acpx-claude.local.structured-question-restart-resume`,
the first turn asked a question and its result was accepted. The Runner
then logged `runner did not prove durable suspension before checkpoint`
(`runner.suspend` pending, Runner lifecycle `ready`). After a server
restart and the answer, the next run failed with
`runner_state_identity_mismatch:
prior_owner_terminal_state_indeterminate;
retirement_refused=target_not_sandbox_runner`, and its root was
quarantined.

**Expected behavior**

When the prior local Runner is provably stopped and every other
retirement proof holds, the next run retires that owner as a continuity
break and continues. If the stop cannot be proven, the run keeps the
named rejection.

**Steps to reproduce**

1. Run a local per-turn native turn whose `runner.suspend` does not
finish after its result is accepted (host load average ~40).
2. Start the next turn for the same session.
3. See `retirement_refused=target_not_sandbox_runner`.

## What Changed

- `server/src/services/native-runtime/native-restart-recovery.ts`: add
`proveNativeLocalRunnerStopped`. It uses the existing restart-recovery
checks: the recorded Runner PID is dead or now belongs to a process with
a different start time; its recorded process group is not alive; each
recorded provider process is dead or recycled. A missing PID, start time
or process group, a live recorded process, or a start time that cannot
be compared is not proof. When settlement already cleared the run's
process fields, the saved `native.local_process_stopped` receipt is the
Runner proof. Extract `nativeProviderProcessIdentities` (checkpoint plus
run events) so restart recovery and this proof read provider PIDs the
same way.
- `server/src/services/native-runtime/native-session-executor.ts`
(`retireFinishedPerTurnRunnerdOwner`, `readSettledRunnerdProjection`): a
local target is now eligible. For a local Runner, the projection accepts
the Runner's own unsuspended receipt for the same identity and
unfinished Runner lifecycle commands (`runner.suspend`, `runner.drain`,
`runner.shutdown`) only. All other proofs are unchanged: committed
result, released lease, no recovery state, stopped controller, delivered
terminal, other commands complete, tool inputs answered, quarantine
copies. The process proof runs before retirement and again just before
the archive.
- `doc/execution-semantics.md`: describe the local case.
- Tests: seven integration cases in
`native-recovered-owner-followup.test.ts` and ten unit cases in
`native-restart-recovery.test.ts`.

## Verification

- Red before the fix: the four new integration cases failed with
`retirement_refused=target_not_sandbox_runner`, which is the incident
error.
- Green after the fix: `pnpm exec vitest run
src/services/native-runtime/native-recovered-owner-followup.test.ts`
35/35. The new cases prove that a stopped Runner is retired (root
archived under `continuity-breaks`, no quarantine), and that a live
recorded Runner (`runner_process_alive`), a missing identity
(`runner_process_identity_missing`), and a pending non-lifecycle command
(`journal_commands_unsettled(turn.start.pending)`) keep the rejection.
All existing sandbox cases still pass, including "keeps an unsuspended
Runner receipt decisive" for sandbox targets.
- `native-restart-recovery.test.ts` unit cases: recycled PID, live
process, unknown start time, live group, live provider, missing PID or
start time.
- `native-session-executor.test.ts` + `native-restart-recovery.test.ts`:
1190 pass. `native-runner-restart-recovery.integration.test.ts` +
`native-restart-recovery-isolation.test.ts` (shared provider-PID
extraction): 81 pass. `tsc --noEmit -p server/tsconfig.json`: pass.
- Live: `pnpm test:e2e:runner -- --max-parallel 1
--max-automatic-retries 0 --id
local-session-integrity.runner-acpx-claude.local.structured-question-restart-resume`,
3 runs at eec57dd5ed: 3/3 PASS. The host load average was ~15 (the
incident had ~40), and `runner.suspend` finished in all three runs, so
these runs show no regression but did not exercise the new retirement
path. The integration cases cover that path.

## Risks

- The new path lets a follow-up archive a local root whose Runner
receipt is unsuspended. This is safe only if the Runner is stopped, so
the proof uses exact PID and start-time identity and fails closed on any
uncertainty. `ps` start times have one-second precision; a sub-second
difference is treated as the same process (not proof).
- A zombie-only process group on macOS can report as alive. That keeps
the rejection, as before.
- No quarantine behavior changes. A refused retirement still quarantines
the root as before.

## Model Used

- Claude Opus 5.5 (`claude-opus-5-5`), Anthropic, through Claude Code
with tool use (shell, file edits, GitHub CLI). Extended reasoning on.

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have searched GitHub for duplicate or related PRs and linked
them above
- [x] I have either (a) linked existing issues with `Fixes: #` / `Closes
#` / `Refs #` OR (b) described the issue in-PR following the relevant
issue template
- [x] I have not referenced internal/instance-local Paperclip issues or
links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip`
URLs)
- [x] My branch name describes the change (e.g. `docs/...`, `fix/...`)
and contains no internal Paperclip ticket id or instance-derived details
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [x] All Paperclip CI gates are green
- [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups
- [x] I will address all Greptile and reviewer comments before
requesting merge

🤖 Generated with [Claude Code](https://claude.com/claude-code)

---------

Co-authored-by: Claude Opus 5.5 <noreply@anthropic.com>
2026-11-06 15:11:00 -06:00
DottaandClaude Opus 5.5 586caa5f49 fix(native): hand a shutdown-interrupted startup to the next controller (#19596)
## Thinking Path

> - Paperclip is the open source app people use to manage AI agents for
work
> - The native Runner path runs an agent turn through a runnerd process
that the control plane owns
> - A restart of the control plane must keep the task going without a
click, if that is safe
> - A graceful shutdown closes the HTTP listener first and then drains
the heartbeat runs
> - A native run that was between provider dispatch and runnerd backend
setup in that gap failed with `local_runtime_api_listener_unavailable`,
so the drain did not see it as running and did not suspend it for the
next boot
> - This pull request makes that failure a restart detach: the run stays
running with its claim, the drain suspends it, and the next controller
adopts it
> - The benefit is that a SIGTERM in this window no longer spends a
failure and a same-run retry, and the task continues by itself

## Linked Issues or Issue Description

Refs #19530 (the same restart window, before provider dispatch).

**What happened?**

In a restart chaos replay (ACPX Claude, local runner), a
restart-recovered run got SIGTERM while
`createRunnerdBackendWithinSessionClaim` built the runnerd backend.
`resolveLocalRuntimeApiUrl()` threw
`local_runtime_api_listener_unavailable` because shutdown had already
closed the listener. The run settled `failed`. The drain then logged
`restartSuspendedRunIds: []`. The next boot used the one bootstrap
retry. A second SIGTERM hit the same window, and the task stopped at a
manual Retry.

**Expected behavior**

A run that this process cannot continue because it is shutting down is
handed to the next controller. It is not settled as failed.

**Steps to reproduce**

1. Start a native Runner task and restart the server (K1) so that
startup recovery resumes the run.
2. Send SIGTERM while the resumed run sets up its runnerd backend.
3. See the run fail with `local_runtime_api_listener_unavailable` and
the drain report no suspended runs.

## What Changed

- `server/src/runtime-api.ts`: `resolveLocalRuntimeApiUrl()` throws the
new `LocalRuntimeApiListenerClosedError` when this process had a
listener and closed it (the `listening` flag is false or the `close`
event fired). The error message stays
`local_runtime_api_listener_unavailable`, so the existing classifiers do
not change. A listener that never started still throws the plain error.
- `server/src/services/native-runtime/native-session-executor.ts`: for a
local Runner, the startup failure handler treats
`LocalRuntimeApiListenerClosedError` like a restart detach. It stops
lease renewal, keeps the claim and throws
`NativeControllerDetachedForRestartError`. Heartbeat already keeps such
a run `running`. A remote Runner keeps the same-run bootstrap retry from
#19462, because startup recovery has no process evidence to adopt a
claimed remote startup
(`native-runner-restart-preparation.integration.test.ts` still covers
that path).
- `doc/execution-semantics.md`: describe the new rule.
- Tests: a heartbeat regression that closes the real runtime API
listener before backend setup, then drains and restarts; a unit test for
the closed versus never-started listener; two `vi.mock` factories keep
the real module exports.

## Verification

- Red before the fix: `pnpm exec vitest run
src/__tests__/heartbeat-native-restart-suspension.test.ts -t listener`
failed with `restartSuspendedRunIds: []` and the run `failed`
(`local_runtime_api_listener_unavailable`, `bootstrap_retry`).
- Green after the fix: the same test passes. The drain suspends the run,
the run stays `running` with `awaiting_runner_reattach`, and the next
controller claims it and reaches the backend once.
- `pnpm exec vitest run
src/__tests__/heartbeat-native-restart-suspension.test.ts
src/http/server.test.ts
src/__tests__/server-startup-feedback-export.test.ts
src/services/native-runtime/native-session-executor.test.ts
src/services/native-runtime/native-recovered-owner-followup.test.ts`:
1333 tests pass. One timing test in `native-session-executor.test.ts`
failed once under host load average ~30 and passed alone.
- `pnpm exec tsc --noEmit -p server/tsconfig.json`: pass.
- Live, restart chaos harness, local ACPX Claude (`claude-sonnet-5`),
`--rc06-masked`, this branch at a35ec8b845 (before the remote-scope
commit 5dc63f24fb, which does not change the local path). The original
replay schedule no longer reached the window, because the task now ends
before the second fault. So I moved the faults earlier: K1 at 10 s, then
K2 as soon as the recovered server is ready.
- K1 + K2, 2 runs: both runs PASS with **R1 pass**. Each drain logged
`restartSuspendedRunIds: [<run>]` (before: `[]`). The next boot
classified the run `resume_dead_runner` and the same run completed. No
`local_runtime_api_listener_unavailable` failure.
- K1 + K2 + K2, 2 runs: each drain suspended the run. The fourth boot
blocked the run with `native_restart_recovery_blocked`, because three
restart claims used the three-attempt recovery budget. Retry then
completed the task (R3 pass). That budget count is a separate open item.
This pull request does not change it.

## Risks

- Low. The new path applies only after this process closed its own
listener, which happens only during shutdown. The run then waits for the
drain or the next boot, as for the other restart detaches.
- If shutdown does not reach the drain (for example SIGKILL after the
listener closes), the run keeps its live claim until the claim expires.
Then startup recovery handles it as a hard restart. This is the same as
any run that is running at a hard kill.

## Model Used

- Claude Opus 5.5 (`claude-opus-5-5`), Anthropic, through Claude Code
with tool use (shell, file edits, GitHub CLI). Extended reasoning on.

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have searched GitHub for duplicate or related PRs and linked
them above
- [x] I have either (a) linked existing issues with `Fixes: #` / `Closes
#` / `Refs #` OR (b) described the issue in-PR following the relevant
issue template
- [x] I have not referenced internal/instance-local Paperclip issues or
links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip`
URLs)
- [x] My branch name describes the change (e.g. `docs/...`, `fix/...`)
and contains no internal Paperclip ticket id or instance-derived details
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [x] All Paperclip CI gates are green
- [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups
- [x] I will address all Greptile and reviewer comments before
requesting merge

🤖 Generated with [Claude Code](https://claude.com/claude-code)

---------

Co-authored-by: Claude Opus 5.5 <noreply@anthropic.com>
2026-11-06 15:10:44 -06:00
PaperclipandClaude Opus 5.5 0048595610 Reject failover backups behind the accepted event cursor
Check supported controller journals before copying a verified backup to a replacement sandbox. Preserve native_event_replay_conflict when a runner exit wraps the error, so stale state does not enter a retry loop. Also supply the normal image-only input in the workflow target fixture used by current master.

Verified 1,171 native session tests and nine workflow target tests. The new stale-cursor and classification cases fail on unchanged master; the workflow fixture reproduces and fixes the unset input error. Broader CI and exact-head Apex review remain required.

Co-Authored-By: Paperclip <noreply@paperclip.ing>
Co-Authored-By: Claude Opus 5.5 <noreply@anthropic.com>
2026-11-06 12:58:01 -08:00
DottaandClaude Opus 5.5 d728be8fbf fix(native): re-bootstrap a Daytona runner restarted before session.open (#19583)
## Thinking Path

> - Paperclip is the open source app people use to manage AI agents for
work
> - Native runs on Daytona start a `paperclip-runnerd` process in a
sandbox. The local control plane keeps the runner's controller state in
an encrypted Postgres checkpoint.
> - When the control plane restarts, restart recovery classifies each
live native run and decides to reattach, resume, bootstrap again, or
hold the task.
> - A restart chaos wave killed the control plane twice while a Daytona
runner was connecting. The run was claimed and the sandbox runner was
launched, but `session.open` never completed. No provider evidence
existed.
> - Recovery waited correctly for the old 60 s controller lease to
expire. Then the classifier had no rule for a claimed remote bootstrap.
It returned `ambiguous_remote_recovery_evidence` and blocked the task as
"Workspace repair required".
> - The controller writes each command to the Postgres checkpoint before
it sends it. After the lease expires, that checkpoint is the complete
record of what reached the sandbox runner.
> - This pull request lets recovery prove from that checkpoint that no
provider work exists, and then start the same-run bootstrap again.
> - The benefit is that a restart during Daytona runner startup
continues automatically instead of stopping the task.

## Linked Issues or Issue Description

**What happened?**

A restart during Daytona remote runner startup (native ACPX Claude, two
SIGKILLs about 20 s apart) left the task blocked. The run history showed
`remote_controller_lease_live` twice, then
`ambiguous_remote_recovery_evidence` with disposition `blocked`. The
task showed "Workspace repair required"
(`native_restart_recovery_blocked`) and did not continue.

**Expected behavior**

When the durable controller record proves that the runner received only
bootstrap commands, recovery continues the run with a fresh bootstrap.
Any evidence of provider work keeps the hold.

**Steps to reproduce**

1. Start a native run on a Daytona environment.
2. Kill the control plane after the sandbox runner connects and before
`session.open` completes.
3. Restart the control plane and wait for the old controller lease to
expire.
4. See that restart recovery blocks the task with
`ambiguous_remote_recovery_evidence`.

Root cause:
`server/src/services/native-runtime/native-restart-recovery.ts`
`classifyNativeRunnerRecoveryEvidence`, remote branch. It admitted only
an unclaimed bootstrap (`remote_execution_never_claimed`, #16349) or a
run with a provider checkpoint. A claimed bootstrap with no provider
evidence fell through to `ambiguous_remote_recovery_evidence`.

The decrypted checkpoint of the failed run held `connectionCount: 1`,
`run.prepare` delivered once and pending, `session.open` pending and
never delivered, no committed events, and `ackedSourceSeq: 0`.

Refs #16349, #19524

## What Changed

- `native-bootstrap-proof.ts`: move the incomplete-bootstrap predicates
from the executor into a small pure module. Restart recovery and the
executor now use the same proof. No behavior change.
- `native-runner-checkpoint.ts`: add
`nativeRunnerCheckpointProvesIncompleteBootstrap`. It reads only a
checkpoint with the bootstrap parts (header, cursor, `command:1`,
`command:2`), checks the run, runner instance, and session identity, and
applies the shared proof. A remote runner journal is not on this host,
so the proof uses the controller record alone.
- `native-restart-recovery.ts`: for a classic sandbox run whose owner
lease has expired, with a durable checkpoint, no session checkpoint, no
provider evidence, and no staged attachment, claim
`bootstrap_incomplete` with the reason
`remote_bootstrap_proven_incomplete` when the checkpoint proof holds. At
three provider attempts, block with
`execution_recovery_budget_exhausted`.
- `native-session-executor.ts`: add
`restoreRemoteBootstrapCheckpointForRecovery`. For a
`bootstrap_incomplete` recovery on a sandbox target, it restores the
Postgres checkpoint over the local external-state marker. The existing
incomplete-bootstrap proof then checks the restored state before it
quarantines the root and bootstraps again.
- `doc/run-log-events.md`: document the new disposition reason.

## Verification

- Red, then green: `cd server && npx vitest run
src/services/native-runtime/native-runner-restart-recovery.integration.test.ts
-t "remote bootstrap"`. Before the fix, the proven case and the budget
case returned `blocked` / `ambiguous_remote_recovery_evidence`.
- New cases: the proven claimed bootstrap gets `bootstrap_incomplete`
(attempt kept, generation +1, run still `running`, no recovery action).
The hold stays for a queued `turn.start`, an acknowledged event, adopted
state, no checkpoint, and a spent budget. The executor helper restores
the checkpoint only for a bootstrap recovery on a classic sandbox and
only over a marker for the same run.
- Regression set: `native-runner-restart-recovery.integration`,
`native-session-executor`, `native-restart-recovery`,
`native-bootstrap-retry.integration`, `heartbeat/recovery`: 1383 passed,
14 skipped.
- Live Daytona replay of the failing chaos task (double SIGKILL during
remote runner startup), 3 runs: REPLAY_RESULTS

## Risks

- A fresh bootstrap acquires a new sandbox. The old sandbox keeps its
lease until run settlement releases all run leases. The old runner gets
no turn command, because only the controller issues one and the new
controller never connects to it.
- If `session.open` reached the old runner, the old provider session can
exist without a turn. No provider work or tool call can happen in it.
- Any checkpoint shape other than the bootstrap-only shape keeps the
previous fail-closed hold.

## Model Used

- Claude Opus 5.5 (`claude-opus-5-5`), Anthropic, via Claude Code with
tool use (shell, file edits, GitHub CLI) and extended reasoning.

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have searched GitHub for duplicate or related PRs and linked
them above
- [x] I have either (a) linked existing issues with `Fixes: #` / `Closes
#` / `Refs #` OR (b) described the issue in-PR following the relevant
issue template
- [x] I have not referenced internal/instance-local Paperclip issues or
links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip`
URLs)
- [x] My branch name describes the change (e.g. `docs/...`, `fix/...`)
and contains no internal Paperclip ticket id or instance-derived details
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [ ] All Paperclip CI gates are green
- [ ] Greptile is 5/5 with no open P2s, recommendations, or follow-ups
- [x] I will address all Greptile and reviewer comments before
requesting merge

🤖 Generated with [Claude Code](https://claude.com/claude-code)

---------

Co-authored-by: Claude Opus 5.5 <noreply@anthropic.com>
2026-11-06 14:43:22 -06:00
DottaandClaude Opus 5.5 4938a930d6 fix(budgets): stop pending or restart-lost accounting from hard-stopping companies (#19497)
## Thinking Path

> - Paperclip is the open source app people use to manage AI agents for
work
> - Budget admission and run accounting decide whether any task in a
company may start
> - A control-plane restart that kills a provider turn mid-flight can
lose that turn's final usage receipt. ACPX Claude reports usage only at
turn end, so the receipt never becomes complete
> - Accounting kept such a run "awaiting receipt" forever. Every later
admission in the company then refused with "completed runs await
accounting", and the budget evaluator opened a hard-stop incident that
paused the company. No product action could clear it: raising the budget
refuses while runs await accounting, accounting retry finds no new data,
and allowing unpriced usage does not apply to pending runs
> - Restart chaos waves showed this as a dead task Retry, a new task
blocked as "over budget" at 22 of 500 cents, and a hard stop that
cancelled queued Retries and an unrelated running task
> - This pull request closes the debt from evidence: once native
recovery reaches terminal failure and the provider stop is verified, the
known part settles as an unpriced charge. Until then the run holds new
work as recovering accounting, without a hard stop
> - The benefit is that a restart no longer bricks a company with a hard
budget. The operator's unpriced-usage policy decides admission, and
unknown spend still never shows as zero cost

## Linked Issues or Issue Description

Refs #19399, #19426, #19431 (earlier restart Retry fixes; this is the
budget layer under the same journey).

**What happened?**
After a control-plane SIGKILL during an ACPX Claude turn, the killed run
ended `native_provider_terminal_failed` with
`usage_json.accountingReceiptReady = false` and `cost_accounting_pending
= true`. It stayed that way for good. The task Retry was accepted but
parked with `budget.blocked` ("Company cannot start work while completed
runs await accounting"), which the UI showed as "Retry is waiting for
execution checks". A new Codex task was escalated to `blocked` with "the
original recovery target is over budget" while the company had spent 22
of 500 cents. After the next restart the budget evaluator opened a
hard-stop incident (`amount_observed` 22.08 < 500), paused the company
and cancelled both queued Retries.

**What did you expect?**
A restart should not stop the company. Unknown usage from a stopped
provider should become an honest, operator-governed state, and Retry
should start a run.

**Steps to reproduce**
1. Give a company a hard-stop budget.
2. Start an ACPX Claude task and SIGKILL the control plane mid-turn, so
the resumed turn fails.
3. Observe the run stay `cost_accounting_pending` with an incomplete
receipt, and every new admission refuse.

## What Changed

- `budgets.ts`: completed runs that await accounting now hold new work
only. They no longer open a hard-stop incident, pause the company, place
an agent budget hold, or deliver Stop to running work. Only spend at the
limit, or unpriced usage under a blocking policy, does that. Chaos wave
A and a pre-restart lifecycle cell showed the wedge: a run that had just
succeeded stayed terminal for about 100 ms before its charge committed,
the evaluator paused the company in that gap, and the Stop it delivered
left a cancelled run whose receipt never closed.
- `run-cost-accounting.ts`: a failed native run is a closed receipt
source only with positive stop evidence: its finalization is
`terminal_failure` with no result (not a finalization-deadline failure),
it no longer records a process identity, and its latest server-authored
process event is `native.local_process_stopped`. One SQL predicate
serves the reconciler scan and settlement. Accounting now settles its
known part as an `unpriced` charge instead of waiting forever. The
background reconciler selects these runs. The reservation settles. Other
incomplete receipts stay pending as before. A cancelled run keeps its
existing accounting drain, so Stop recovery can still deliver its final
receipt.
- `native-local-process-stop.ts` and its transactional callers:
releasing a verified local or remote process stop wakes the accounting
worker, so the closed debt settles promptly.
- `usage-receipts.ts`: a charge settled without its receipt is marked
`accountingReceiptUnavailable`. A later complete receipt that carries
its own price (including a rate-card price) corrects it. A receipt with
no own price and unchanged usage does not reopen the hold.
- `budget-exposure.ts`: the blocking unpriced-usage policy no longer
counts a charge settled from a lost receipt with no observed usage. That
is unknown, not "usage with no reliable price". Complete receipts that
report no tokens (for example Cursor Cloud) still count. A live wave
under the default policy hard-stopped its company at 0 of 500 cents on
one such charge.
- `budget-exposure.ts`: a terminal-failure native run with an
incomplete, not capture-failed receipt counts as recovering accounting.
Admission holds new work ("New work must wait while a native run
recovers its unfinished accounting") without a hard-stop incident, a
company pause or cancellation of running work.
- `recovery/service.ts`: the stranded-work comment names the actual
budget gate instead of always saying "over budget".
- `task-interruption-presentation.ts`: a Retry parked by
`budget.blocked` says it waits for the budget, not for "execution
checks".
- `doc/SPEC-implementation.md`: documents the closed-receipt contract
next to the existing incomplete-receipt rule.

## Verification

- New embedded-Postgres suite
`server/src/__tests__/closed-native-receipt-accounting.test.ts`, built
from the persisted shape of the killed run:
- Red before the fix: the run stayed pending, `reconcileRunCosts`
accounted 0, and admission refused with "completed runs await
accounting".
- Debt stays pending with no verified stop event, with a
finalization-deadline failure, with a recorded process identity, and
while the coordinator can still produce a result.
- Under a blocking policy, a lost receipt with no usage does not
hard-stop; one with tokens still blocks. A run with a still-recorded
process identity paused the company with a hard-stop incident.
- Green after: the stopped run settles as one `unpriced` charge with the
reservation settled; admission is clear under an `allow` policy and
names "no reliable price" under `block`; a run with a recorded process
identity or a non-terminal coordinator stays pending; the closing window
holds admission without an incident or pause; a final receipt that
arrives later still enters late-receipt reconciliation.
- Pending accounting from a run that just finished holds admission with
no incident, no pause, no enforcement version bump, and an unrelated
running run stays running. Red before the `budgets.ts` change: the
company was paused.
- A later priced receipt corrects the unavailable charge to its price;
an unpriced one leaves it settled.
- `task-interruption-presentation.test.ts`: the `budget.blocked` Retry
wait message.
- `budget-enforcement-scoping.test.ts`: the accounting-hold release
cases now assert that pending accounting places no budget hold and that
admission clears after settlement.
- Existing suites pass locally: all budget suites (control publication,
enforcement scoping, enforcement worker, evaluation work, live attempts,
history, service, live usage, budget cancellation),
native-stop-accounting, explicit-native-continuation,
native-case-handoff, cost-data-quality, heartbeat-cost-accounting,
run-cost-accounting, native-usage-delivery. Server typecheck passes.
- Runner e2e cell
`lifecycle-baseline.runner-codex.local.lifecycle-dependency-restart-neutral`,
which failed on master with a false agent budget hold before any
restart, passes on this branch.
- Live restart-chaos wave (local runner, K1 SIGKILL, codex + 2× ACPX
Claude + OpenCode, 4 restarts, company policy `unpricedUsagePolicy:
allow`) with the accounting fix: every killed run settled (no
`cost_accounting_pending` left), the company stayed active, the OpenCode
Retry completed the task on the first click and the Codex Retry finished
its task. That wave also exposed a 1-second false hard stop in the
closing window (observed 0 of 500 cents) that cancelled the running
OpenCode turn; the `budget-exposure.ts` change fixes it and has its own
red/green test.
- Confirming live wave with both commits, same plan (2× ACPX Claude,
OpenCode, Codex; 4 K1 restarts): both Claude tasks passed R3 (one Retry
click started a run that completed the task), OpenCode passed R1
(continued by itself), and the Codex Retry completed its task. Zero
budget incidents, zero cancelled runs, zero runs left pending
accounting, company active; three killed runs recorded as `unpriced`
charges. The only open signature is an unrelated workspace-durability
check (`R2:pre_fault_files_lost` on the Codex long-bench task).

## Risks

- Behavior change: a stopped native run's lost receipt now becomes an
`unpriced` ledger charge with its known usage. If that usage has tokens,
the default `block` policy still stops new work with "recorded usage has
no reliable price". If it has none, the charge is visible in Costs but
does not stop the company. Other unpriced charges keep their existing
effect. Unknown spend is never recorded as a priced receipt. Budget
enforcement stays best effort, as the spec says; killed OpenCode and
Codex requests already lose their in-flight usage.
- Remote runs and runs without a verified local stop keep their debt
pending (an admission hold only, no hard stop).
- Contract change: pending accounting no longer pauses a scope or stops
running work. New work still waits with "completed runs await
accounting". A scope's real hard stop (spend at the limit, or blocked
unpriced usage) is unchanged.
- If a provider stop can never be verified, the run stays "recovering
accounting": new work waits without a hard-stop incident. Before, the
same state paused the company. The hold is visible in admission errors
and Costs.
- A receipt that arrives after settlement posts a late correction. The
original unpriced charge stays in the ledger.
- No schema or migration change.

## Model Used

- Claude Opus 5.5 (`claude-opus-5-5`), Anthropic, via Claude Code with
tool use (shell, file editing, embedded Postgres tests, live
restart-chaos harness).

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have searched GitHub for duplicate or related PRs and linked
them above
- [x] I have either (a) linked existing issues with `Fixes: #` / `Closes
#` / `Refs #` OR (b) described the issue in-PR following the relevant
issue template
- [x] I have not referenced internal/instance-local Paperclip issues or
links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip`
URLs)
- [x] My branch name describes the change (e.g. `docs/...`, `fix/...`)
and contains no internal Paperclip ticket id or instance-derived details
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [ ] All Paperclip CI gates are green
- [ ] Greptile is 5/5 with no open P2s, recommendations, or follow-ups
- [x] I will address all Greptile and reviewer comments before
requesting merge

🤖 Generated with [Claude Code](https://claude.com/claude-code)

---------

Co-authored-by: Claude Opus 5.5 <noreply@anthropic.com>
2026-11-06 14:27:51 -06:00
DottaandClaude Opus 5.5 b7e28eb2f7 fix(evals): let an allowlisted manual dispatch authorize its private evidence (#19599)
## Thinking Path

> - Paperclip is the open source app people use to manage AI agents for
work
> - Chat-feature evals run in the trusted `runner-full-stack-e2e`
workflow and keep their evidence in private history
> - A manual chat run needs authority to write that private evidence
> - Today that authority is a stored approval for the exact run ID in
`RUNNER_E2E_MANUAL_PRIVATE_APPROVALS_JSON`
> - The run ID exists only after dispatch, so every manual run stops
until a person writes the record
> - The dispatcher is already checked against
`RUNNER_E2E_ALLOWED_ACTOR_IDS`, so the second step adds friction without
a new decision
> - This pull request lets an allowlisted manual dispatch authorize its
own private evidence, as the TestOps admission already does
> - The benefit is that an allowlisted operator can start a chat eval
and it runs, while scheduled runs still never touch chat evidence

## Linked Issues or Issue Description

Refs #18134, Refs #18170

**What existing behavior does this improve?**
A manual `runner-full-stack-e2e` run with chat-feature IDs fails at
private evidence transfer unless a person first adds an approval row for
that run ID to a repository variable.

**Subsystem affected**
Runner E2E manual workflow private evidence authorization
(`manual-private-transfer.ts`, `runner-full-stack-e2e.yml`).

**Proposed change**
Derive the evidence authority from the dispatch itself, with the same
checks the TestOps chat admission uses.

## What Changed

- New `tests/runner-e2e/manual-dispatch-authority.ts`:
`authorizeManualDispatch` admits private evidence only when all of these
are true:
- The event is `workflow_dispatch` of `runner-full-stack-e2e.yml` on the
default branch, with the `manual` cadence.
  - The run attempt is `1`.
- The actor is in `RUNNER_E2E_ALLOWED_ACTOR_IDS`, the event sender is
that actor, and the triggering actor is the same person.
  - The trusted cell selection equals the dispatch's own `id` input.
- The authority binds the workflow SHA, the target SHA from the
authorize job, the run ID and the cells. Every job derives the same
identity hash.
- `manual-private-transfer.ts`: uses the TestOps authority first, then
the dispatch authority, then the stored approval. With the dispatch
authority, `prepare` records the target launcher digest instead of
comparing it with an approved digest.
- `runner-full-stack-e2e.yml`: the 14 steps that read
`RUNNER_E2E_MANUAL_PRIVATE_APPROVALS_JSON` now set
`PAPERCLIP_MANUAL_DISPATCH_AUTHORITY: v1` and pass
`RUNNER_E2E_ALLOWED_ACTOR_IDS`.
- `doc/manual-e2e-private-evidence.md`: describes the dispatch
authority. The stored-approval shape stays documented for the TestOps
catalog case workflow.
- The new file is separate on purpose. `manual-private-retention.ts` and
the other protocol files must match each target byte for byte, so
existing candidate branches keep working.

## Verification

- `vitest run tests/runner-e2e/manual-dispatch-authority.test.ts
tests/runner-e2e/manual-private-transfer.test.ts
tests/runner-e2e/manual-private-report.test.ts
tests/runner-e2e/manual-private-report-integration.test.ts
tests/runner-e2e/manual-private-policy.test.ts`: 57 tests passed.
- New tests cover one valid dispatch and rejection of: a scheduled run,
a bounded cadence, a non-allowlisted actor, an empty allowlist, a rerun
by another person, a second attempt, a non-default or different workflow
ref, a sender who is not the actor, a missing target SHA, a missing
authority switch, and cells that differ from the dispatch input. The
eight-cell limit still applies.
- A `prepare` test runs the real transfer script: a non-allowlisted
actor produces no outputs, and an allowlisted dispatch produces the
session policy and an identity that records the target launcher digest.
- Negative control: with the previous `manual-private-transfer.ts`, the
new `prepare` test fails.
- Workflow tests that read this workflow: 111 of 116 passed. The 5
failures in `workflow-target.test.ts` (`IMAGE_ONLY: unbound variable`)
also fail on unchanged `master`. `paid-runner-routing.test.mjs` passed
(7 tests).
- I did not run a live dispatch. The first live proof is a manual
dispatch of chat IDs after merge.

## Risks

- The dispatcher now vouches for the target branch. A target branch with
a changed launcher can write private evidence if an allowlisted operator
dispatches it. The protocol files must still match the trusted copies
byte for byte.
- The eight-cell limit is unchanged. The report job has eight fixed read
slots, and each read policy must fit the 2,048-character session policy
limit. Lifting the limit needs a separate change to the report sessions.
- The `runner-e2e-paid` environment still has required reviewers. That
is a repository setting and this change does not touch it.
- The authority uses `RUNNER_E2E_ALLOWED_ACTOR_IDS`, not `CODEOWNERS`.
Keep that variable aligned with the people who may start paid runs.

> For core feature work, check [`ROADMAP.md`](ROADMAP.md) first and
discuss it in `#dev` before opening the PR. Feature PRs that overlap
with planned core work may need to be redirected — check the roadmap
first. See `CONTRIBUTING.md`.

## Model Used

- Claude Opus 5.5 (`claude-opus-5-5`), Anthropic, with tool use and code
execution in Claude Code.

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have searched GitHub for duplicate or related PRs and linked
them above
- [x] I have either (a) linked existing issues with `Fixes: #` / `Closes
#` / `Refs #` OR (b) described the issue in-PR following the relevant
issue template
- [x] I have not referenced internal/instance-local Paperclip issues or
links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip`
URLs)
- [x] My branch name describes the change (e.g. `docs/...`, `fix/...`)
and contains no internal Paperclip ticket id or instance-derived details
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [ ] All Paperclip CI gates are green
- [ ] Greptile is 5/5 with no open P2s, recommendations, or follow-ups
- [x] I will address all Greptile and reviewer comments before
requesting merge

🤖 Generated with [Claude Code](https://claude.com/claude-code)

Co-authored-by: Claude Opus 5.5 <noreply@anthropic.com>
2026-11-06 14:26:31 -06:00
DottaandPaperclip b55d8a9201 fix(runner): retain admitted OpenCode pack on ordinary continuation (#19558)
## Thinking Path

> - Paperclip manages AI agents and preserves their work across runs.
> - Native OpenCode turns can restore a saved provider session after the
prior daemon stops.
> - The Rust provider binds that saved state to exact qualified launch
paths and artifact bytes.
> - Ordinary continuation selected the current provider pack, although
live reattachment retained the admitted pack.
> - A new proxy or a diagnostics setting could therefore replace the
launch profile behind saved state.
> - This pull request retains the recorded pack for ordinary OpenCode
continuation with a verified durable binding.
> - The benefit is compatible continuation without weakening artifact
integrity or granting replay authority.

## Linked Issues or Issue Description

Refs: #17512, #18237. These added saved authority and compatible pack
reuse. This change covers ordinary OpenCode continuation.

**What happened?**

An ordinary remote OpenCode continuation could select a newer pack while
restoring its existing provider session. The Rust recovery guard then
rejected the changed launch profile. The same error can occur after a
controller release changes the bundled proxy.

**Expected behavior**

A continuation with a valid saved binding and pack receipt uses the same
admitted artifacts. If those artifacts are unavailable, it holds the
saved state instead of selecting another pack or creating a provider
session.

**Steps to reproduce**

1. Admit a remote OpenCode session with a qualified protected provider
pack.
2. Persist its pack receipt and suspended durable Runner state.
3. Change the controller bundle to a valid pack with a different proxy
digest.
4. Start an ordinary continuation with diagnostics enabled.

The new executor regression fails before the repair because selection
rejects the available original pack in favor of the new bundle. It
passes after the repair.

## What Changed

- Retain the saved provider pack for ordinary OpenCode continuation with
a verified durable session binding.
- Keep provider-pack retention independent of surviving-daemon identity:
a new daemon records its current binary, and an authorized continuity
break restores normal compatible pack selection.
- Test retained pack selection after a proxy upgrade and fail closed
when only a newer pack is available.
- Test the real Rust executor with changed, valid proxy file bytes. It
rejects drift without changing saved state and accepts the original
artifacts again.
- Document the selection rule and its limits.

## Verification

- Initial prevention focused Vitest: 220 passed across native session
execution, pack authority, pack verification and pack preparation. The
executor regression was observed failing before the production change.
- Rust native provider tests: all five OpenCode tests passed. These
include the existing drift guard, actual changed proxy bytes, original
artifact restoration and restart-lost turn behavior.
- Advisory review follow-up: reproduced stale daemon identity in the
actual executor and incompatible pack selection after a governed
continuity archive. Both fail before their corresponding repairs and
pass after them. Added an executor regression for a missing authority
receipt; it remains at the current release integrity gate without
creating a new receipt.
- Updated head `639c080856` integrates master `17901d74ba` by normal
merge. Affected Vitest: 202 passed across four files, including all new
review regressions; all seven server typecheck layers passed. Exact-head
CI and fresh Greptile/Paperclip review are pending. The prior head had
57 successful checks plus successful Snyk and Greptile 5/5; those
results do not qualify this revision.
- Environment: macOS arm64, Node 26.4.0, locked pnpm 9.15.4
dependencies, controlled remote command boundary and real Rust provider
executor. No paid provider calls or hosted retries.
- This is a bounded prevention change. It does not deliver historical
provider artifacts to a replacement sandbox or replacement controller.
Missing saved receipts or unavailable old artifacts remain a separate
cold-recovery gap. No full hosted recovery is claimed.

## Risks

- A continuation now requires its exact recorded pack when it has a
durable binding. A newer installed pack cannot substitute for missing
historical bytes.
- Fresh launches, other providers and explicit continuity replacement
keep their existing paths. Current ownership, company, model, permission
and receipt binding checks remain in effect.
- The repair does not relax the Rust launch-profile guard, replay prior
tool effects, or authorize a new provider conversation. Existing
published review receipts remain history.

## Model Used

OpenAI Codex, GPT-6 family. The host does not expose the exact model ID
or context window. Capabilities used: reasoning, code editing, shell
execution, tests and authenticated read-only browser diagnostics.

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have searched GitHub for duplicate or related PRs and linked
them above
- [x] I have either (a) linked existing issues with `Fixes: #` / `Closes
#` / `Refs #` OR (b) described the issue in-PR following the relevant
issue template
- [x] I have not referenced internal/instance-local Paperclip issues or
links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip`
URLs)
- [x] My branch name describes the change (e.g. `docs/...`, `fix/...`)
and contains no internal Paperclip ticket id or instance-derived details
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [ ] All Paperclip CI gates are green
- [ ] Greptile is 5/5 with no open P2s, recommendations, or follow-ups
- [x] I will address all Greptile and reviewer comments before
requesting merge

---------

Co-authored-by: Paperclip <noreply@paperclip.ing>
2026-11-06 14:21:17 -06:00
DottaandClaude Opus 5.5 744056ecc8 feat(evals): run the staging-soak reliability cases from a TestOps plan (#19549)
## Thinking Path

> - Paperclip is the open source app people use to manage AI agents for
work
> - The runner full-stack E2E lane runs real Paperclip work against real
agents, and TestOps launches its standing plans
> - PR #19455 added seven staging-soak reliability cases, but no TestOps
plan or workflow lane selects them, so they run only by hand with
personal keys
> - These cases catch restart, interrupt, queue and lost-runner
regressions, so they must run from TestOps before a release with the
standard reports
> - This pull request adds a sibling "Reliability — staging soak"
TestOps plan on the existing plan-2 lane, with native OpenCode and
DeepSeek 1017 through OpenRouter as the plan profile for six of seven
cases
> - The benefit is a cheap, repeatable pre-release reliability launch
with the same Allure/TestOps results, retained report and dashboard as
plan 2

## Linked Issues or Issue Description

Refs #19455

**What existing behavior does this improve?**
The staging-soak reliability cases from #19455 run only by a manual
local command.

**Subsystem affected**
Runner full-stack E2E (`tests/runner-e2e/`) and its TestOps lane in
`.github/workflows/runner-full-stack-e2e.yml`.

**Current behavior**
No TestOps plan includes the cases. The workflow cannot select them from
TestOps. Every cell uses native Codex (`gpt-5.6-sol`) or an ACPX facade
on Daytona, which is expensive.

**Proposed behavior**
A TestOps launch of the Reliability plan runs seven cells (six DeepSeek
1017, one native Codex for steering) through the standing plan-2 path
and reports them like plan 2.

**Reason and benefit**
The cases become a first-class, low-cost, pre-release check with
retained evidence. Plan 2 keeps its 20-case qualification semantics.

**Breaking changes**
None. Plan 2 selection, reporting and history identities stay the same.

## What Changed

- **Plan choice: a sibling plan, not an extension of plan 2.** Plan 2 is
bounded at 20 standing IDs. Its `full-run` / `test-plan-2` tag needs a
complete 20-case attempt, and subset runs do not qualify it. Adding
seven cases would change that denominator and the qualification history.
The sibling plan shares the same TestOps GitHub job, selection,
admission, projection, upload and verification code. A launch selects
cases from exactly one plan (`plan_mixed` fails), and each plan has its
own full-plan size (20 or 7).
- `tests/runner-e2e/reliability-testops.mjs` (new): the mapping module.
It has seven cases, full names `paperclip.Product
E2E.everyday-workflows.<case>`, execution IDs, soak signatures and an
empty `reliabilityRegistration`. A partial, duplicate, plan-2 or
malformed registration is rejected. An empty registration makes
selection fail closed before any spend
(`product_regression_testops_reliability_unregistered` for a bootstrap,
`case_mismatch` for a TestOps launch). No TestOps IDs are invented.
- `product-regression-testops.mjs` / `-cli.mjs`: select a plan by its
case identities or by the new bootstrap input. The projection binds each
cell's own environment (`local` or `daytona`) instead of a fixed
`local`. It adds a `soak-<signature>` tag and reports `plan` and a
per-plan `fullPlan`. Plan-2 history IDs, parameters and results do not
change.
- Catalog: `runner-opencode-deepseek-1017` is now one shared fixture
with `supportedEnvironments: ["local", "daytona"]`. The OpenCode server
driver already runs on Daytona for `runner-opencode` (task-workspaces,
core-compatibility, rolling deployment); only the model differs. The
chat-feature suite stays local, and its definition hash does not change.
`everyday-workflows` gains exactly six DeepSeek plan cells (definition
version 12, 52 + 13 + 3 cells).
- Cell matrix (plan), DeepSeek 1017 on native OpenCode:
`interrupt-redirect`, `reassign-midrun` and `tree-pause-release` run on
`local`. `three-turn-revise` runs on Daytona with the per-turn lease
(S49). `long-silent-command` (S52/S52b) and `queued-across-restart`
(S55/U9) run on the Daytona warm lease.
- `queue-steer` is the one exception. It must steer an active turn, and
the OpenCode server driver declares `steering: false`, so the route
answers `steering_unsupported` and the case cannot pass. The plan uses
the existing steering-capable
`everyday-workflows.runner-codex.daytona.queue-steer` cell for it
(Greptile finding). No DeepSeek `queue-steer` cell exists. The other
native Codex Daytona cells and the ACPX facades stay selectable through
`--group reliability`, but they are outside the plan.
- `runner-full-stack-e2e.yml`: adds the `testops_plan` bootstrap input
(`product-regression` by default), sets the plan-specific bootstrap
launch name and tags, and renames two jobs to plan-neutral names. The
OpenCode steps now match `startsWith(matrix.profileId,
'runner-opencode')`, so the DeepSeek profile gets the pinned OpenCode
binary, runner TypeScript, the local Node check and the remote provider
pack. Before this change, the DeepSeek profile could not run in this
workflow. `OPENROUTER_API_KEY`, `OPENAI_API_KEY` (only for
`queue-steer`) and `DAYTONA_API_KEY` come from the same
`matrix.credentialName` and `matrix.environmentId` gates that other
cells use.
- `runner-e2e-testops-registration.yml` +
`reliability-testops-registration.mjs` (new): a trusted, master-only,
allowlisted-actor, idempotent `workflow_dispatch`. `inspect` only reads.
`register` reuses cases with the same full name, creates missing cases
and the plan, and assigns the plan to plan 2's GitHub job with plan 2's
job parameters. It writes a receipt with a ready-to-commit
`reliabilityRegistration` snippet. Only this job gets `ALLURE_TOKEN`,
and it never runs a provider cell.
- **No schedule and not per PR.** The plan runs only from a TestOps
launch or a manual dispatch. It is not in the daily or weekly cron
(`scheduledSelection` excludes it). A weekly run would add a paid
50-minute Daytona cell every week, but these signatures move with
release-risky changes, not with time.
- Docs: `EVERYDAY-WORKFLOWS.md` (matrix, environment reasons, local
coverage limits, registration steps), `README.md`, `doc/evals.md`.

### Registration still needed (requires TestOps credentials)

1. Dispatch **Runner E2E TestOps registration** from master with
`operation=inspect`.
2. Dispatch it with `operation=register`.
3. Commit the `reliabilityRegistration` snippet from the run summary
into `tests/runner-e2e/reliability-testops.mjs` in one reviewed PR.
4. Launch the plan from TestOps. Tag only a complete seven-case attempt
`full-run`.

### What local plan cells cannot reproduce

The local cells do not reproduce the Daytona-only variants: the remote
`workspace_busy` save after Stop (S47), remote stop settlement during
reassignment (S48), and a lost or replaced remote runner during a tree
hold (S50). S51 (lost runner) has no case yet. The explicit-only native
Codex Daytona extras still cover S47, S48 and S50 on a sandbox.

## Verification

- `node --test tests/runner-e2e/product-regression-testops.test.mjs
tests/runner-e2e/reliability-testops.test.mjs`: 26 pass. These tests
cover fail-closed selection, partial or duplicate registration, plan
mixing, environment binding, per-plan denominators, preserved failure
classes, the CLI select → project → verify flow for a seven-case launch,
registration idempotency and job checks, and the workflow inputs and
credential gates.
- `vitest` for `reliability-testops-catalog`,
`product-regression-testops-catalog`, `everyday-reliability` and
`catalog.test`: 98 pass. These tests bind the mapping to real catalog
cells (profile, model, environment, credentials, single attempt). They
also check that the cells stay out of `--all`, the suite, profile and
environment selectors and the daily/weekly cron. Real grader output must
survive projection.
- `pnpm test:e2e:runner:typecheck`: pass.
- `pnpm test:e2e:runner -- --list --suite everyday-workflows --group
reliability` lists 16 cells: 6 DeepSeek plan cells, 7 native Codex cells
(one is the `queue-steer` plan cell) and 3 ACPX extras. `--matrix-json`
for the DeepSeek plan IDs emits `needsDaytona=true` and three Daytona
OpenCode cells with `credentialName=OPENROUTER_API_KEY`.
- Full `pnpm test:e2e:runner:unit`: the remaining failures happen the
same way on an unchanged master checkout. They are in
`workflow-security` (3), `controller-outage`, `operating-receipts`,
`pi-*`, `private-framework-report` and `remote-native-bootstrap`. #19529
tracks that drift. This PR adds no failures.
- Not run: paid cells, a TestOps registration and a TestOps launch. They
need provider and TestOps credentials, which exist only in protected CI
environments. Catalog and projection tests are not live qualification.

## Risks

- The registration script calls TestOps APIs (`POST /api/testcase`,
`/api/testplan`, `/assign`, `/jobparameter`) through the same endpoints
as the chat catalog reconcile. Tests use fakes, not the live API.
`inspect` comes first, and `register` is idempotent.
- DeepSeek 1017 on Daytona has not run before. The first launch is the
acceptance step for those three cells.
- If a later case needs another capability that OpenCode lacks, it must
use a capable profile in the same way as `queue-steer`. The catalog test
pins the single exception.
- The OpenCode workflow conditions now match any `runner-opencode*`
profile. Today this covers `runner-opencode` and
`runner-opencode-deepseek-1017` only.
- If someone commits a bad `reliabilityRegistration`, module load fails
for both plans. A unit test rejects any committed registration that is
not empty or complete.

## Model Used

- Claude Opus 5.5 (`claude-opus-5-5`) through Claude Code, with tool use
(shell, file edits, local test runs).

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have searched GitHub for duplicate or related PRs and linked
them above
- [x] I have either (a) linked existing issues with `Fixes: #` / `Closes
#` / `Refs #` OR (b) described the issue in-PR following the relevant
issue template
- [x] I have not referenced internal/instance-local Paperclip issues or
links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip`
URLs)
- [x] My branch name describes the change (e.g. `docs/...`, `fix/...`)
and contains no internal Paperclip ticket id or instance-derived details
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [x] All Paperclip CI gates are green
- [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups
- [x] I will address all Greptile and reviewer comments before
requesting merge

🤖 Generated with [Claude Code](https://claude.com/claude-code)

---------

Co-authored-by: Claude Opus 5.5 <noreply@anthropic.com>
2026-11-06 14:19:58 -06:00
DottaandPaperclip 0e111c5075 fix(recovery): verify host preparation logs before continuation (#19580)
## Thinking Path

> - Paperclip manages AI agents and the work assigned to them.
> - A task can retain saved input after a failure during execution
preparation.
> - Retry must prove that the old attempt stopped and its files are
saved before it admits a new turn.
> - The host can write a skill announcement before it dispatches a
provider.
> - The historical preparation verifier requires an empty log and
rejects this safe host output.
> - This pull request verifies that exact small log against the saved
skill selection and immutable log facts.
> - Eligible saved input can continue once. Uncertain execution and
current policy gates stay held.

## Linked Issues or Issue Description

Refs: #19004, #19464, #19552. These repairs establish the existing
preparation proof. They do not accept the host skill announcement
described here. A search for the exact announcement found no duplicate
repair. This is a bug fix within the existing recovery contract and does
not duplicate a roadmap feature.

**What happened?**

A legacy preparation failed before provider dispatch with a host
bootstrap certificate. Its remote lease stopped and its files were
recovered. A newer preparation failed while that save was in progress.
An accepted Retry then remained in execution recovery because its
ancestor had one host skill log record.

**Expected behavior**

Admit one fresh turn for the existing saved user request after all
execution, workspace and policy proofs pass. Preserve old outcomes and
source records.

**Steps to reproduce**

1. Create the real PostgreSQL fixture in
`saved-bootstrap-continuation.test.ts`. It includes a recovered remote
workspace, exact stop receipt, bootstrap ancestor, later failed
preparation and saved user status queue.
2. Call `requestTaskRetry`, then call the real resume path concurrently.
3. On the baseline guard, the empty-log control dispatches. Adding only
the host skill announcement leaves zero queued successors and the same
execution-recovery wait.

**Paperclip version or commit**

Reproduced on master `65aee998a3`. The final branch rebases cleanly onto
`c650f36007`.

**Deployment mode**

Source checkout with real embedded PostgreSQL and controlled log
storage. The reported runtime is a server with remote sandbox
workspaces.

## What Changed

- Add a narrow verifier for one host skill-announcement record. It binds
the complete bytes to the run log reference, digest, size, sequence,
timestamp, output excerpt and recorded skill selection. Each announced
skill must have a saved version; unrelated configured skills may also be
selected.
- Read at most 2,049 bytes with a two-second cancellation deadline.
Missing, slow, changed, additional or provider output fails closed.
- Use this proof only for historical bootstrap ancestors that already
pass the no-provider, settlement, stop and saved-file checks.
- Add real admission regressions for one successor, concurrent resume,
duplicate Retry and delivery of the original saved comment. Add
current-gate and storage-boundary negative cases.
- Document the continuation contract.

## Verification

- **RED:** On the unchanged baseline guard, the exact final fixture
passes the empty-log control and fails the host-announcement case: zero
successors instead of one. The saved comment and Retry remain deferred.
- **GREEN:** 486/486 tests pass across `task-retry.test.ts`,
`explicit-native-continuation.test.ts`,
`saved-bootstrap-continuation.test.ts` and
`verified-preparation-log.test.ts`.
- The new cases cover provider-started evidence, provider events, a
native coordinator, missing stop proof, missing skill selection, changed
hash, unknown output, pending approval and operator Stop.
- Read-boundary cases cover foreign references, changed bytes,
truncation, extra records, malformed selection and cancellation. An
unrelated recovery completes while another read is stalled.
- After the rebase, the original 27 new cases passed again at head
`be640292fe136232e3db0dc6938233f53b6ccb43`. The review fix adds three
cases, and the full 486-test pass includes all 30 new cases.
- The exact previously observed historical input also passes the
production log verifier: one read, 240 bytes matching the stored size
and SHA, the same timestamp and output sequence, and a recorded version
for the announced skill. This uses captured bytes for transport and does
not claim live hosted admission.
- Full local server layered typecheck passes after building this
checkout's Runner declarations and normal excluded-plugin SDK links. The
typing correction also passes all 30 new cases and the actual captured
historical log proof. The prior CI build/typecheck failure was TS7006 in
the JSON parser; it is retained as failed evidence and corrected in this
revision.
- Module boundary and whitespace checks pass. Local verification
selection requires broad CI because the execution contract changed;
focused local suites are recorded above. [Required final-head
CI](https://github.com/paperclipai/paperclip/actions/runs/42281590449)
typecheck, build and tests pass at
`c557cdc4dc57000cb478f9be0717675dcac7364e` (56 successful checks, no
required check pending or failed). Greptile rates this final revision
5/5; the addressed thread is resolved. The advisory hosted Paperclip
Review is paused with its request saved and has not supplied a
final-head assessment. Its pending status is disclosed separately from
required CI and Greptile.
- Controlled fixtures exercise the admission and dispatch receipts.
Hosted continuation still requires rollout and reassessment of the
existing request.

## Risks

This adds one bounded storage read to an active historical admission
check. Failed or uncertain reads keep the existing hold. The host
bootstrap certificate remains the primary no-provider proof. Log text
alone cannot authorize continuation. No schema, retry budget, provider
setting, account selection or scheduler changes.

## Model Used

OpenAI GPT-6 family via Codex, with coding and tool use. The exact model
ID and context window are unavailable in this session's metadata.

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have searched GitHub for duplicate or related PRs and linked
them above
- [x] I have either (a) linked existing issues with `Fixes: #` / `Closes
#` / `Refs #` OR (b) described the issue in-PR following the relevant
issue template
- [x] I have not referenced internal/instance-local Paperclip issues or
links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip`
URLs)
- [x] My branch name describes the change (e.g. `docs/...`, `fix/...`)
and contains no internal Paperclip ticket id or instance-derived details
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [x] All Paperclip CI gates are green
- [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups
- [x] I will address all Greptile and reviewer comments before
requesting merge

---------

Co-authored-by: Paperclip <noreply@paperclip.ing>
2026-11-06 14:19:31 -06:00
DottaandPaperclip 96da284ed8 fix(workspaces): attach latest recovered files to Retry (#19542)
## Thinking Path

> - Paperclip manages work performed by AI agents.
> - A recovered run must retain its saved files when the user presses
Retry.
> - A prior fresh attempt can leave the task bound to a different
workspace.
> - Remote preparation restored older recovery attachments but omitted
the latest canonical snapshot.
> - The provider also received recovery paths only for fresh workspace
attempts.
> - This change attaches the latest verified snapshot and includes its
paths in the normal continuation context.
> - The selected workspace, its files, and execution admission rules
remain intact.

## Linked Issues or Issue Description

Refs #19479, #19340.

**What happened?**

Retry could start with an older recovery attachment while the newest
saved files stayed in another workspace. A real database regression
restored an older one-line log and omitted a newer verified twelve-line
log. Workspace selection alone did not reveal this failure.

**Expected behavior**

The provider can find and read the newest verified saved files. Recovery
preserves the selected workspace and existing files. Missing or invalid
recovery proof stops preparation.

**Steps to reproduce**

1. Recover a failed run into a canonical remote snapshot.
2. Retain a later selected workspace with an older recovery attachment.
3. Press Retry and inspect the actual files and provider continuation
paths after preparation.

**Paperclip version or commit**

Reproduced on master `5d25117ffad69a93fb92026950b9acd9cec08f69` with
synthetic data and local PostgreSQL 17.

## What Changed

- Follow the admitted run's committed recovery ancestry as well as
retained source IDs.
- Import canonical snapshots as separate `.paperclip-recovered/`
attachments. Reuse snapshot decryption, hash checks, and manifest
validation.
- Check the current writer, company, task, immutable committed snapshot
receipt, and source access before import. Read-only historical proof
remains valid when a later writer advances the source; execution
admission proof is unchanged.
- Preserve older attachments and later selected workspace files.
Repeated imports retain the same path and preserve user edits.
- Include only physically present recovery paths in ordinary provider
continuation context, using the caller’s storage backend.
- Document the contract and add actual-file regressions and negative
evidence cases.

## Verification

- Before the fix, normal Retry admission and remote preparation restored
only the older one-line log. The newest twelve-line archive was
independently readable but absent from the prepared workspace.
- With the original context projection, full heartbeat workspace
preparation restored the files but omitted their paths from provider
context. The regression failed on the missing newest path.
- All 28 focused real-database cases pass together at the final local
revision (46.32s). An earlier run had one asynchronous comment-admission
poll failure before workspace preparation; its bounded rerun passed, and
the fresh final 28-case run also passed without timeout or assertion
changes. These cover actual Retry admission, remote preparation,
provider prompt rendering, missing and corrupt evidence, company and
task scope, duplicate imports, and later workspace files.
- A controlled local child reads the path from provider context and
reports twelve lines with the expected first and last timestamps. It
does not run a loop or write the log.
- `node node_modules/vitest/vitest.mjs run
server/src/services/workspace-recovery.test.ts -t 'restores the newest
recovered tick bytes|canonical recovery attachments|deduplicates
immutable canonical sidecars|caller.s storage backend|restores ordinary
same-workspace Retry|admits one HTTP Retry|keeps verified
copyback|prepares the .* task workspace|continues recovered preparation'
--fsModuleCache` runs against a dedicated local PostgreSQL 17 test
database.
- Cold save and restore on a new allocation preserves user edits inside
an existing sidecar. Both review findings failed before their fixes.
Incomplete prepared or missing-snapshot references now stop preparation.
- An upgrade regression reproduced valid legacy and canonical sidecar
paths disappearing on same-allocation reuse. The fix rebuilds expected
proofs from existing scoped receipts and checks the live destination,
preserving user edits without copying files on that live allocation. The
same actual-file case also saves the parent workspace, reserves it for a
child, preserves both legacy and canonical paths, and refuses a revoked
receipt. For related-task sidecars, retention verifies the selected
workspace’s succeeded migration history, exact source run/task entry,
and matching workspace and source-run markers. When legacy migration
markers are absent, a verified committed snapshot of the selected
workspace can establish the same exact provenance. It is read once per
preparation with the existing decryption, hash, and manifest validators;
the live workspace is never modified. Task relationships alone grant no
access; fresh import stays scoped to the current task. Missing or
mismatched migration history fails closed. The retained-path checks live
in the attachment owner; remote-workspaces.ts remains below 1,000 lines.
- Further regressions failed before the fix for deleted-sidecar context,
caller-supplied storage, and a legitimately advanced source workspace.
The fixed cases preserve edited sidecars and ordinary same-workspace
Retry restore.
- Real non-root regressions reproduced EACCES when cleaning read-only
directories in import staging and snapshot verification.
Permission-aware cleanup fixes both while preserving live 0555 directory
modes and contents.
- The complete remote file-transport suite passes: 123 tests, including
six real-command provenance cases for absent, matching, foreign,
symlinked, and hard-linked proof.
- Server typechecks include the CI layered configuration, after building
the current Runner TypeScript package and SDK dependency closure. `cd
server && node scripts/typecheck-layers.mjs` passes all seven layers at
the latest head (exit 0).
- macOS arm64, Node 26.4.0, repository-pinned pnpm 9.15.4. The initial
embedded PostgreSQL startup timed out before tests; the passing runs use
a disposable PostgreSQL 17 container with temporary storage. No timeout
was increased.
- Required CI passes at `42495c7a73f3716240987fa403af7511fc9df9b9`: 55
successful checks, three expected skips, no failures; [aggregate
verification](https://github.com/paperclipai/paperclip/actions/runs/42282134772/job/128121560893)
passes. Greptile is 5/5 with zero unresolved threads. The separate
hosted Paperclip Review remains queued and is disclosed as pending. This
change has not been deployed; its affected hosted workflow remains held.

## Risks

Canonical snapshot import adds bounded storage and archive work during
active preparation. Upgrading an older related-task sidecar without
migration proof may verify the selected workspace archive once; its
temporary copy is removed and later runs reuse the recorded provenance.
Missing objects, invalid receipts, or archive corruption stop
preparation. Imports use separate directories and do not replace
selected workspace files. Existing admission, Stop, budget, pause, and
provider replay rules still apply.

## Model Used

OpenAI Codex, GPT-6 family, with repository analysis, code editing, and
tool execution. The runtime-specific model ID and context window are not
exposed in this session.

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have searched GitHub for duplicate or related PRs and linked
them above
- [x] I have either (a) linked existing issues with `Fixes: #` / `Closes
#` / `Refs #` OR (b) described the issue in-PR following the relevant
issue template
- [x] I have not referenced internal/instance-local Paperclip issues or
links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip`
URLs)
- [x] My branch name describes the change (e.g. `docs/...`, `fix/...`)
and contains no internal Paperclip ticket id or instance-derived details
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [x] All Paperclip CI gates are green
- [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups
- [x] I will address all Greptile and reviewer comments before
requesting merge

---------

Co-authored-by: Paperclip <noreply@paperclip.ing>
2026-11-06 14:19:24 -06:00
Devin FoleyandPaperclip 91b641757b fix(sentry): keep low-trust project denials on the task (#19531)
Keep exact pre-dispatch project access denials on their task instead of the unexpected Sentry failure stream. Validation: 301 focused tests and all applicable CI pass.

Greptile scored the exact head 5/5, and no review threads remain unresolved.

Co-Authored-By: Paperclip <noreply@paperclip.ing>
2026-11-06 12:04:51 -08:00
DottaandClaude Opus 5.5 24508a8ba5 perf(dev): add agent preflight with a shared content-keyed build cache (#19555)
perf(dev): add agent:preflight with a shared content-keyed build cache

Agent worktrees each built the Runner from nothing: a cold cargo debug and
release build, the Runner TypeScript build and its checks, about 8 minutes
per fresh worktree on a loaded machine.

`pnpm agent:preflight` replaces the manual install + Runner build sequence.
It skips steps whose inputs are unchanged and reuses other worktrees'
results from ~/.cache/paperclip/agent-build:

- Runner and eval-kernel dist, keyed by the Runner build-input digest and
  the toolchain
- Runner debug binaries, keyed by every file the Rust build reads
- a cargo seed with third-party crates only; the Runner crate is scrubbed
  because cargo records its out-of-package includes by absolute path

Entries are written once with an atomic rename and restored as APFS clones.

Also exclude provider-assets from the Runner build inputs. The build writes
that directory itself, so the first build in every fresh checkout saw its
inputs change and never recorded a build stamp.

Co-Authored-By: Claude Opus 5.5 <noreply@anthropic.com>
2026-11-06 14:01:54 -06:00
Devin FoleyandPaperclip 17901d74ba Fix onboarding account changes after returning from Review (#19557)
Save changed onboarding connections on the existing agent after validation.
Select the chosen personal provider account and serialize default changes so
an abandoned save cannot override a later choice after Back. Preserve runner,
environment, and unrelated agent settings. Reject unsupported managed-account
to legacy-secret switches with an actionable Connect error.

Verified with 327 component tests, three backend credential-selection tests,
nine affected browser tests, typecheck, build, token gates, all CI jobs, and
Greptile 5/5 with no unresolved comments.

Co-Authored-By: Paperclip <noreply@paperclip.ing>
2026-11-06 11:55:29 -08:00
DottaandPaperclip 124b2cd0ad fix(server): certify background deadlines for idle tenants (#19001)
## Thinking Path

> - Paperclip is the open source app people use to manage AI agents for
work.
> - Background services own future checks, retries, and recovery work.
> - An idle tenant can stop only when a durable wake covers its
remaining duties.
> - The current alarm catalog covers several domains but leaves these
owners blocked.
> - A saved future timestamp alone cannot prove that reconstruction or
admitted work has settled.
> - This pull request binds durable domain snapshots to the actual
registered worker revisions.
> - The tenant can hand off supported future duties and retain all
checks for uncertain or active work.

## Linked Issues or Issue Description

No matching public issue was found. Related work: [domain deadline
handoff #18656](https://github.com/paperclipai/paperclip/pull/18656),
[owned blocker diagnostics
#18632](https://github.com/paperclipai/paperclip/pull/18632), and
[completed history proof
#18646](https://github.com/paperclipai/paperclip/pull/18646). The
separate [native idle-session change
#18988](https://github.com/paperclipai/paperclip/pull/18988) covers
runtime retirement. [Far-future retry re-probes
#13534](https://github.com/paperclipai/paperclip/pull/13534) changes
recovery responsiveness after an upstream success; this change preserves
existing retry decisions.

**What happened?**

Future status-card, external-object, skill-sync, watchdog, retry, and
quota duties lacked complete owner-bound coverage in the idle deadline
proof. A completed quota task could also retain its monitor policy and
timestamp and remain blocked after the scheduler had disarmed it.

**Expected behavior**

A settled registered owner can hand off its exact supported future
deadline. Active work, dirty reconstruction, transaction uncertainty,
changed revisions, claims, unknown state, and unsupported duties keep
the tenant awake. Completed history retains its data and stops recurring
work when the owner has no remaining duty.

**Steps to reproduce**

1. Produce a supported future duty through its normal service.
2. Let the registered worker finish reconstruction and admitted work.
3. Request an owned idle report with the negotiated domain deadline
catalog.
4. Check the saved earliest deadline and generation before durable alarm
registration.
5. Stop and reconstruct the worker. Check that ordinary admission and
claims resume useful work once due.
6. Complete a quota task. Keep its saved policy and timestamp. Check
that linked unfinished work still blocks sleep and that settled history
does not.

**Paperclip version or commit**

The owned patch was qualified at
`699c8569fa34338dd75cdc5731381ec1e2efdb45`. Publication head
`491fac368ee72eaac8ae105d53e6bf6b305d8a6a` normally merges actual master
`039e0dad2c51c80251e1302a19c5566e039c357a`. All 43 owned files are
byte-identical. All 29 new upstream paths are preserved. The later
normal current-master integration is
`8c912e1ba4fc66397a7341ade59373af8075068f`, described separately below.

**Deployment mode**

Source checkout with real PostgreSQL 17 and a controlled local Node
process. No deployed alarm, tenant suspension, database suspension, or
fleet result is claimed.

## What Changed

- Add registered-worker reconciliation revisions and invalidate them on
stop.
- Keep status-card, external-object, and skill deadline interpretation
with their owners.
- Reuse the watchdog classifier against the supplied database snapshot.
- Validate the exact saved retry run and paired queued wake.
- Validate legacy quota source bindings and the current assignee or
reviewer policy.
- Preserve common issue scope, dependency, sibling, and state checks for
covered waits.
- Compose normalized owner snapshots within the existing bounded
deadline proof and recheck revisions after inspection.
- Bind actual service and worker instances from server startup. Missing
bindings preserve existing blockers.
- Retain completed quota policy and timestamps while independently
rejecting linked unfinished runs or wakes.
- Block unconsumed budget evaluation inputs through the owning queue
predicate. Accounting policy and settlement stay unchanged.
- Bind completed quota history through fixed-size UUID-array parameters,
preserve exact company/task/source associations, and guard external
references before the run-ID join.
- Batch watchdog subtrees and shared classifier facts without changing
the 64-query or two-second proof budget; preserve exact company pairing
for first-run evidence.
- Extend production-path regression controls and document supported
coverage and limits.

## Verification

Current integration head: `688abc6cac6016b9fb50e5832f81e2975ed5d49f`.
Fresh exact-head checks completed with **58 successes, three intentional
skips and one neutral review**, including aggregate `ci / verify`. The
complete current Greptile review is **5/5**. The complete current
Ponytail verdict is **Ship (4/5)**, with only optional cleanup of an
unused MCP proof input; both prior correctness findings are resolved.
All review threads and nested pages were inspected. The normal master
merges preserve the registered retry deadline owner and current startup
completion log after the same readiness await. The earlier focused
evidence below remains tied to its tested source revisions.


Current-master integration `8c912e1ba4fc66397a7341ade59373af8075068f`:

- Normally merge actual master
`46fb933b0155d183ce64a8bdc4950d1b58c926f6`. Every nonoverlapping tree
blob retains its owning parent across 14,044 paths. All 42 owner-only
files and 15 critical binding/proof/readiness files remain
byte-identical. Three automatic overlaps preserve the existing watchdog
binding, conservative unavailable-reader fallback and optional actual
owner arguments. The two scoped-deadline conflicts retain the entire
upstream resource-reservation/mid-pass admission/abort algorithm inside
the existing reconciliation revision/running/failure fence, with both
parent test sets.
- Actual TypeScript 7.0.2 server noEmit passed in 9.434 seconds, normal
source declaration layers in 12.102 seconds, and four selected
test/helper/config layers extending the actual CI configuration in 3.167
seconds. No compiler option weakening, heap override, donor declarations
or SDK replacement stub.
- Focused PG0 controls passed: 102 scheduler/proof/owner controls in
16.451 seconds, including all 21 scoped-deadline cases; 121 startup
controls; and all 107 unchanged instance-settings route cases in 6.456
seconds. The latter first hit a local prewire-guard
listener-registration race. Only the ignored guard was corrected to
register the same actual OS-bound server port immediately after native
listen returns. Closed, unknown, foreign, offhost and PG destinations
remain blocked. Original failure evidence is retained; product code and
assertions were unchanged.
- The exact current UI policy command now reports zero findings (0.362
seconds); its seven scanner controls pass. The earlier dependent PR used
an old scanner/source baseline under a newly enforcing trusted workflow
and reported 397 findings. Carrying the genuine current master resolves
that mismatch without editing unrelated UI sites or relaxing the gate.
- Every meaningful worker checked its executing PID/thread/preload hash
and matching receipt. PG0 controls opened no PostgreSQL sockets; all
owned processes exited. Original dependency-cache/DNS, ignored-harness
syntax/type and guard failures remain separate from product results.
- This is fresh semantic and focused runtime qualification, not a local
whole-repository or current-head PostgreSQL acceptance rerun. The
upstream workspace-busy parked-retry/terminal-holder notification path
remains unchanged by this merge and needs its separate current-graph
producer check. Historical six-case/scale results below stay tied to
their measured sources. A matching controlled default-cadence follow-up
is in #19191; no fresh current-head two-cycle or deployed suspension
claim follows from this merge.
- All 59 exact-head check contexts now pass (55 success, one neutral,
three intentional skips), plus the legacy security status. The complete
edited Greptile review is 5/5 for this exact commit, with all
root/nested pages inspected and no unresolved threads. Ponytail stopped
without completing its new turn; it supplied no new verdict or finding.
Prior actual findings remain addressed. Earlier scores/checks below
belong to their explicit earlier commits.


On frozen clean merged source `699c8569fa`:

- Real PostgreSQL acceptance: **6/6 passed**,83.483 seconds wall. Actual
retry producer creates the exact saved run/wake; stopped and
reconstructed owner resumes through current admission, one durable
start, real local process output and normal task completion. Includes
cancellation, drain arrival, retained quota history with queued-run/wake
negatives, watchdog review settlement and budget-input
empty/pending/consumed control using the actual owner.
- Affected coordinator, deadline, scoped-deadline, recovery and
composed-proof controls: **78/78 in five files passed**,32.114 seconds
wall, worker 1/no file parallelism.
- `pnpm exec tsc --noEmit -p server/tsconfig.json`: **passed**,17.467
seconds. Native TypeScript 7.0.2 and Node 24.22.2.
- PostgreSQL tests use one dedicated test database, matching
fixture/admin URLs, pool limit four, one worker, and no embedded
fallback. Every run recorded unchanged source hashes and a clean
checkout.
- The eight-second real-clock retry is a domain execution check. It is
below the Cloud minimum wake lead and is not a positive accepted hosted
sleep cycle.
- The completed quota-history product failure and original
fixture/protocol failures were preserved; the owning-reader fix passed a
real PostgreSQL red/green regression before the fresh merged six-case
pass.
- After runtime completion, the dedicated database had zero other
clients and no owned runtime processes. All three qualification process
PIDs exited. The coordinator independently audits and drops the
database.
- Comment-only cleanup has equal strict TypeScript parser ASTs across 15
files. The final lexical audit finds no added comments relative to
actual master. `git diff --check` passed.
- Earlier retry fixtures omitted responsible-user membership, advanced
JavaScript time past the real PostgreSQL lease clock, or produced stdout
without normal task completion. Corrected fixtures use real membership,
an eight-second real deadline, and ordinary task comment/completion. The
last case exposed legitimate disposition repair rather than duplicate
retry promotion.
- The quota and watchdog controls first ran before admitted work or the
existing 30-second reconstruction duty settled. The stronger tests
require an interim blocked report and then exact settled-owner proof.
Production deadlines were not changed. The separate
completed-quota-history defect was fixed in its reader and verified with
linked unfinished-run and wake controls.
- The status/object and skill owners reviewed the actual final startup,
route and post-backup bindings. Their domain source evidence carries
where token-equivalent. The master coordinator coalescing change was
reviewed separately. Historical domain PostgreSQL results are not
presented as fresh full-suite results on this head.

The later master merge adds retry predecessor cleanup checks under the
existing issue claim lock. The source audit confirms unchanged saved
deadlines and run/wake identities. The three actual retry
lifecycle/cancellation/drain cases passed on the batched candidate with
this parent (31.817 seconds). Those local dependency controls preceded
the current exact-head remote run. Native backup preservation and
TestOps changes from master are retained. No pass is inferred for
changed dependency behavior solely from unchanged owned files.

Review repair published as `643f1e7400`:

- The original reader returned `unknown` after seven actual watchdog
reviews settled across seven companies. The unchanged composed-report
regression passed after batching; the final reader passed in 61.841
seconds, including active queued-work and stopped-owner rejection.
- A separate two-company red/green control rejects terminal-run context
from another company as first-run grace evidence. Shared facts are
serialized once, with per-root IDs and review summaries.
- The affected recovery, proof and diagnostic unit controls passed 47/47
(14.575 seconds). Startup owner-contract fixtures passed 121/121 (10.589
seconds).
- Diagnostic PostgreSQL controls passed7/7 (12.406 seconds), including
the normal budget-input producer and its exact blocker reason. Initial
empty-state setup uses the same cleanup as per-case teardown when a
dedicated test database is reused.
- Actual repository `pnpm exec tsc --noEmit -p server/tsconfig.json`
passed 12.710 seconds with no heap override. Final source has no added
code comments; whitespace checks pass.
- The original query-budget failure, two-company discriminator, initial
cross-suite fixture failure and an interrupted incorrect local-driver
selector are retained separately. The interrupted run is not a pass.
Independent cleanup found zero owned clients or runtime processes.

Quota-scale repair published as `6696a37f8a`:

- The exact 10,000-row completed-history case reproduced
`MAX_PARAMETERS_EXCEEDED`:90,002 bound parameters exceeded the driver's
65,534 limit, and the composed report returned `unknown` despite settled
owners. Original failure and actual driver diagnostics are retained.
- Fixed pending-work queries use three typed UUID-array parameters plus
the result limit, keeping exact company/issue/source tuple bindings. The
primary run-ID column stays uncast; a guarded CASE validates the raw
external reference before conversion. The 10,000-row cap and
64-query/two-second proof budget are unchanged.
- The same 10,000-row composed-report case passed 18.860 seconds, with
unfinished run/wake rejection, malformed-reference safety and
conservative 10,001-row overflow. Its fixture derives retained history
from the actual quota producer and normal task completion, expands valid
persisted issue/source pairs, then starts the actual registered owners.
- The existing actual quota producer case passed 14.187 seconds,
including exact future deadline, retained completion history, unfinished
work, real foreign-company source references and noncanonical/malformed
references.
- Affected owner/proof controls passed 22/22 (26.444 seconds).
Production server noEmit passed 16.039 seconds.
- CI on 643 identified TS7034/TS7005 in the settled-watchdog fixture's
initially untyped collection. It is now explicitly typed. A separate
affected-entry semantic check extending the repository's actual
`server/src/__tests__/tsconfig.json` passed 15.093 seconds: six affected
tests, two owner files, ambient declarations and current imported
source, with unchanged strict/module/lib/path settings. The production
server config excludes that test directory and is not presented as
test-layer proof. No custom suppression or replacement SDK stub was
added.
- All runs were sequential with pool max 4, worker 1,
source/config/command hashes and cleared inherited
provider/LIVE/other-database variables. Cleanup found zero owned
database clients or local runtime processes. At prior head
`6696a37f8a5718cd0f79054969a0084462d41d47`, all required CI gates pass.
The exact-head inventory has 55 successes, one neutral review and three
intentional skips. Greptile is 5/5. The complete latest Ponytail verdict
confirms the quota finding is fixed; its only remaining note is optional
unused MCP proof state, not a behavior defect. All three review threads
are resolved. The earlier 643 result remains historical.

The repository-wide typecheck, tests, build and browser gates passed in
the prior `6696a37f8a5718cd0f79054969a0084462d41d47` CI run. The new
`8c912e1ba4fc66397a7341ade59373af8075068f` full CI also passes. They
were not run as a full local workspace command in the focused PostgreSQL
lease. Local evidence above uses bounded external databases and does not
claim embedded-cluster, live-provider or deployed-alarm qualification.

## Risks

- An unsupported or uncertain owner state must remain blocked. An
optimistic exemption could lose work while compute is stopped.
- Changes during reconstruction or inspection must invalidate the proof.
A memory-only timer is not durable alarm coverage.
- Current authorization, budgets, cancellation, accounting, and resource
ownership still apply on dispatch. The proof does not grant execution
authority.
- The supported writer model uses in-process transaction signals and
startup/resume reconstruction. Independent SQL writers and other
replicas need an explicit wake contract.
- Native, review, coalesced, and taskless retry variants remain
conservative until their owner cases qualify. Reviewer quota and hosted
alarm qualification remain open.
- The shared catalog remains opt-in. Legacy callers and missing owner
bindings retain their old blockers.

## Model Used

OpenAI `gpt-6.1-sol` was the configured model for the delegated service
implementations and reviews. OpenAI Codex, based on GPT-6, performed
managing review and integration. Both used repository tools and code
execution. The exact served backend snapshots and context-window limits
were not exposed.

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have searched GitHub for duplicate or related PRs and linked
them above
- [x] I have either (a) linked existing issues with `Fixes: #` / `Closes
#` / `Refs #` OR (b) described the issue in-PR following the relevant
issue template
- [x] I have not referenced internal/instance-local Paperclip issues or
links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip`
URLs)
- [x] My branch name describes the change and contains no internal
Paperclip ticket id
- [x] I have run tests locally and they pass on the final merged head
- [x] I have added or updated tests where applicable
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [x] All Paperclip CI gates are green — exact current-head run passes
- [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups —
complete current-head review and all paginated threads inspected
- [ ] I will address all Greptile and reviewer comments before
requesting merge

---------

Co-authored-by: Paperclip <noreply@paperclip.ing>
2026-11-06 13:48:55 -06:00
Nicky LeachandPaperclip 1391f64551 Add gated release/resume methods to plugin Runner owners (#19584)
## Thinking Path

> - Paperclip is the open source app people use to manage AI agents for
work.
> - Core owns Runner tasks through a lease-bound plugin owner.
> - The SDK already defines release and resume in #19468.
> - The owner still expects an accepted result for both operations, so
it cannot use those SDK results.
> - This pull request adds both methods behind the existing capability,
warm-task and account checks.
> - It uses the SDK parser to verify the result and task ID, and
preserves the owner's cancellation checks.
> - This prepares the owner boundary for later lifecycle integration. It
does not start automatic release or resume.

## Linked Issues or Issue Description

**Problem or motivation**

The plugin Runner owner cannot forward the existing SDK release/resume
pair. Its local result mapping rejects their valid results. Later
lifecycle code needs both operations on the same checked task owner.

**Proposed solution**

Pass the existing description capability to the owner. Add explicit
release and resume methods and use the SDK's operation-result parser.
Require warm-task support and a selected account. Reject calls and late
receipts after owner cancellation or detachment.

**Alternatives considered**

Adding automatic release here would also require connection quieting,
settled-event drain, pending-ticket retry ownership and safe disposal.
Keep those changes together in the next integration. Do not add a new
flag, schema, timer or lifecycle mode here.

Related: #19468. I checked ROADMAP.md and found no duplicate planned
item. An open-PR title search for release/resume found no overlapping
pull request.

## What Changed

- Add the capability-gated owner facade for Codex and ACPX. Resume
returns only `resumed` or `unavailable`.
- Use the SDK parser for exact task-ID and operation-result validation.
- Pass `releaseResumeVersion` from the checked description and test that
it does not cause an automatic operation.
- Cover account-preserving owner rebind, missing prerequisites,
malformed results, ambiguous errors, cancellation and late replies.
- Document the caller's remaining settlement, connection, ticket and
attachment duties.

## Verification

Passed locally on Node 26.12.0 with the pinned workspace dependencies:

- In `server/`: `pnpm exec vitest run
src/services/native-runtime/plugin-runner-task.test.ts` — 74 tests
passed.
- In `server/`: `pnpm exec vitest run
src/services/native-runtime/native-session-executor.test.ts -t 'uses a
task-only'` — 3 cases passed; 1,160 unrelated cases were not selected.
- Built the real workspace SDK dependencies and Runner TypeScript. A
focused strict TypeScript program for the owner and its tests passed.
- `git diff --check` and the added-line secret/PII scan passed.

The first root test command selected a nonexistent Vitest project name
and ran no tests. Running the test from the server package fixed the
command. The first focused TypeScript setup could not find Node types;
pointing it to the package's installed type definitions fixed that
setup. The full regression suite and release checks run in GitHub.

## Risks

The facade has no automatic caller. Existing warm timeout, bootstrap,
outbound connection and pool behavior stay in place. No plugin
capability is advertised or task control channel enabled by this pull
request.

Future integration must serialize release with new work and disposal. It
must quiet the owned connection, keep the exact pending ticket after an
ambiguous reply, authenticate the source again and finish ordinary run
attachment before new work. This change does not qualify provider
parking, cold recovery, retention policy or deployment.

## Model Used

OpenAI GPT-6.1 Sol, exact model ID `gpt-6.1-sol`, High reasoning. Used
code execution and targeted tests. The context-window size was not
exposed.

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have searched GitHub for duplicate or related PRs and linked
them above
- [x] I have either (a) linked existing issues with `Fixes: #` / `Closes
#` / `Refs #` OR (b) described the issue in-PR following the relevant
issue template
- [x] I have not referenced internal/instance-local Paperclip issues or
links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip`
URLs)
- [x] My branch name describes the change (e.g. `docs/...`, `fix/...`)
and contains no internal Paperclip ticket id or instance-derived details
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [x] All Paperclip CI gates are green
- [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups
- [x] I will address all Greptile and reviewer comments before
requesting merge

Co-authored-by: Paperclip <noreply@paperclip.ing>
2026-11-06 11:42:32 -08:00
Nicky LeachandClaude Opus 5.5 7dfdc97b9f fix(deps): let Dependabot update the sandbox providers (#19489)
## Thinking Path

> - Paperclip is the open source app people use to manage AI agents for
work
> - Sandbox providers (`packages/plugins/sandbox-providers/*`) are
standalone published packages. `pnpm-workspace.yaml` keeps them out of
the root workspace on purpose.
> - `.github/dependabot.yml` watches only `/`, so Dependabot never saw
the providers.
> - Because of this, the Kubernetes provider stayed on zod 3
(GHSA-mrhx-c7xc-m3w5) after the rest of the repo moved to zod `^4.6.6`.
#18839 fixed it by hand.
> - We do not want to keep these versions current by hand in many
places.
> - This pull request lets Dependabot update the providers, and keeps
each provider standalone.
> - The benefit is that a provider dependency that falls behind gets a
pull request that can pass CI.

## Linked Issues or Issue Description

Refs #18839 (adds `scripts/typecheck-sandbox-providers` and fixes
Kubernetes zod by hand).
Refs #18998 (a Dependabot pull request for the Pi distribution that
fails CI by design).

**What existing behavior does this improve?**
Dependabot version updates. They skip every package that the root pnpm
workspace excludes.

**Subsystem affected**
CI and dependency automation: `.github/dependabot.yml`,
`scripts/typecheck-sandbox-providers`.

**Current behavior**
Dependabot does not update the sandbox providers. A provider can stay on
an old or unsafe version, and nobody gets a pull request.

**Proposed behavior**
Dependabot updates the providers each week. Each pull request changes
the provider manifests and the lockfiles that CI installs frozen, so the
pull request can pass CI.

**Reason and benefit**
We stop having to find and fix old provider dependencies by hand.

## What Changed

- `.github/dependabot.yml`: add an npm entry for
`/scripts/typecheck-sandbox-providers`. Dependabot treats this workspace
as one unit. One pull request per dependency changes every provider that
uses the dependency and the shared `pnpm-lock.yaml` together. So the
entry needs no `groups`. One entry per provider would open a separate
pull request for each provider, and each one would fail the frozen
install in CI.
- `.github/dependabot.yml`: add an npm entry for
`/packages/plugins/sandbox-providers/daytona`. Daytona is the only
provider with its own lockfile, and the release build and the Daytona
end-to-end job install it frozen. Each lockfile has exactly one
Dependabot entry, so every pull request changes a manifest and its
lockfile together.
- Take Daytona out of the shared typecheck workspace. This pull request
does not commit `scripts/typecheck-sandbox-providers/pnpm-lock.yaml`:
since #19522, only the lockfile refresh workflow writes it. After merge,
the bot removes Daytona's packages from it (no other version changes;
checked with pnpm 9.15.4). Until then CI resolves it in place.
`scripts/typecheck-test-programs.mjs` now installs Daytona from its own
lockfile (`LOCKED_PROVIDERS`, with `--ignore-workspace`). A stale
lockfile is resolved in place for the run, for both installs.
- `.github/dependabot.yml`: add a comment that tells why the Pi and Kimi
runtime distributions have no entry (see Risks).
- `scripts/typecheck-sandbox-providers/pnpm-workspace.yaml`: list each
provider by its full path. Dependabot does not expand a workspace glob
that starts with `../`, so with the glob it saw no providers.
- `scripts/typecheck-test-programs.test.mjs`: add tests. They check that
the workspace list has no glob and matches `SANDBOX_PROVIDERS` without
`LOCKED_PROVIDERS`, that each locked provider has its lockfile, that a
locked provider installs frozen with `--ignore-workspace`, and that a
stale locked-provider lockfile is resolved in place.
- Add `.npmrc` (`auto-install-peers=true`) in
`scripts/typecheck-sandbox-providers` and in the Daytona provider.
Without it, Dependabot reads the root `.npmrc` (`false`). That rewrites
the lockfile settings, and the frozen install then fails. npm and pnpm
never publish `.npmrc`.
- `scripts/typecheck-sandbox-providers/package.json`: add
`"packageManager": "pnpm@9.15.4"`, the version CI uses. Without it,
Dependabot guesses pnpm 10.
- `doc/DEVELOPING.md`: say that contributors do not refresh or commit
Daytona's lockfile either, and that a new provider goes in both lists.

No provider moves into the root workspace. There is no pnpm catalog. The
root `pnpm-lock.yaml` does not change.

## Verification

I ran the real Dependabot updater on this branch with the Dependabot CLI
(`dependabot update ... --local`, updater image
`dependabot-updater-npm@sha256:c5a9451c…`):

- Before the change, the workspace entry loaded only
`cloudflare/bridge-template` (the one path without a glob). It skipped
all the other providers.
- After the change, `--dep typescript` gave one pull request. It changed
the 9 non-Daytona provider `package.json` files and the shared
`pnpm-lock.yaml`, and did not touch Daytona.
- `--dep wrangler` changed only the wrangler closure in the shared
lockfile. Before the `.npmrc` fix, the same run changed
`autoInstallPeers` to `false` and 757 lockfile lines.
- The Daytona entry (`--dep @daytonaio/sdk`) changed Daytona's
`package.json` and its own lockfile in one pull request, and kept
`autoInstallPeers: true`. It keeps the exact pin exact: `0.203.0`
becomes `0.227.3`.
- Both frozen installs (shared workspace, and Daytona with
`--ignore-workspace`) pass with pnpm 9.15.4.
- Dependabot installed `pnpm@9.15.4` from the new `packageManager`
field.

Other checks:

- `.github/dependabot.yml` passes the SchemaStore `dependabot-2.0`
schema (Ajv). A wrong key fails the same check.
- With pnpm 9.15.4, `install --resolution-only --ignore-scripts
--no-frozen-lockfile` in `scripts/typecheck-sandbox-providers` (the
lockfile bot's command) gives exactly the lockfile that passed the
frozen installs earlier in this pull request.
- The lockfile rule from #19522 allows this pull request's diff: it
changes no lock content.
- `node --test scripts/typecheck-test-programs.test.mjs`: the new test
and the provider tests pass. Two other tests need a root `node_modules`
(`tsc`), which my worktree did not have. CI runs them.

These checks cannot run before merge. GitHub reads `dependabot.yml` only
from the default branch. After merge, open Insights → Dependency graph →
Dependabot and make sure that the two new entries show no errors and run
on Monday.

## Risks

- A dependency in both a non-Daytona provider and Daytona (for example
`typescript`) gets two pull requests: one from each entry. Each one
passes alone, and they can merge in any order.
- The typecheck job now typechecks Daytona's tests against Daytona's own
lockfile instead of the shared one. Its versions are a little older (for
example vitest 4.1.11), so a type difference can show up there.
- Majors of shared dev tools (for example TypeScript 7, Vitest 5) come
as one pull request across all providers. It can need code changes
before it passes. That is the same as the root entry.
- Pi and Kimi get no version updates. Every direct dependency there is a
pinned provider release, and the pins feed the provider's ACPX
`commandDigest`. The Runner checks compare the Pi lock with
`PI_DISTRIBUTION_PINS`, and the Kimi build compares the lock SHA-256
with a pin. So any Dependabot change there fails CI (see #18998), and a
real upgrade starts saved sessions fresh. GitHub security alerts still
cover both lockfiles.
- The Pi zod `3.25.76` pin is still affected by GHSA-mrhx-c7xc-m3w5
(open alert). It is deliberate: `pi-acp@0.0.33` has `zod ^3.25.0` as a
direct dependency, not a peer. A fix needs a `pi-acp` release that
allows zod 4. This pull request does not change it.
- `packages/plugins/examples/plugin-orchestration-smoke-example` is also
outside the root workspace. It uses `workspace:*` dependencies, so it
cannot install alone, and this pull request does not cover it.

## Model Used

- Claude Opus 5.5 (`claude-opus-5-5`), Anthropic, used through Claude
Code with tool use (shell, file edits, local Docker runs of the
Dependabot CLI).

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have searched GitHub for duplicate or related PRs and linked
them above
- [x] I have either (a) linked existing issues with `Fixes: #` / `Closes
#` / `Refs #` OR (b) described the issue in-PR following the relevant
issue template
- [x] I have not referenced internal/instance-local Paperclip issues or
links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip`
URLs)
- [x] My branch name describes the change (e.g. `docs/...`, `fix/...`)
and contains no internal Paperclip ticket id or instance-derived details
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [x] All Paperclip CI gates are green
- [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups
- [x] I will address all Greptile and reviewer comments before
requesting merge

🤖 Generated with [Claude Code](https://claude.com/claude-code)

---------

Co-authored-by: Claude Opus 5.5 <noreply@anthropic.com>
2026-11-06 11:08:39 -08:00
DottaandPaperclip f513f0efd9 fix(recovery): admit certified process-loss preparation retries (#19552)
## Thinking Path

> - Paperclip keeps task work durable across server restarts.
> - Restart recovery records a certificate when a Runner preparation
ended before provider work started.
> - Automatic recovery already verifies that certificate together with
saved files and stopped leases.
> - Explicit Retry called a preparation helper that only reached this
proof for status `interrupted`.
> - A certified `failed/process_lost` source therefore stayed blocked
after its files were recovered.
> - This pull request makes the helper reuse the same existing proof.
> - A queued user Retry can then admit one new turn while all current
safety and policy gates remain effective.

## Linked Issues or Issue Description

**What happened?**

A task had a certified process-lost preparation, verified
saved-workspace receipts, a destroyed source sandbox, and one or two
later attempts refused before dispatch. Its accepted Retry request
stayed deferred with `execution_recovery` and created no successor.

The explicit admission helper excluded this source before it could use
the preparation proof added in #19464. This also prevented the
refused-attempt continuation path from #19466 from advancing.

**Expected behavior**

Explicit Retry must use the same positive pre-provider proof as restart
recovery. It must preserve source history, refuse contradictory
execution evidence, honor current policy gates, and admit at most one
successor for the existing request.

**Steps to reproduce**

Persist a legacy preparing run as failed with `process_lost` and the
host bootstrap certificate that provider work did not start. Record its
canonical committed snapshot, recovery/finalization operations, clean
workspace authority, and exact destroyed-lease receipt. Add one or two
unstarted cancelled descendants with the dispatcher's execution-wait
receipt. Accept one Retry request and resume it concurrently twice.
Before this fix, no successor exists and the same request remains
deferred.

**Paperclip version or commit**

Reproduced on master `a6c22806308e8a3c7b21145f80fb471756bb443d`. Related
repairs: #19464 and #19466.

## What Changed

- Reuse `isInterruptedNativePreparation` before the existing
failed-preparation checks. The existing no-coordinator and
historical-ancestor restrictions remain.
- Add real-database regressions for one and two refused descendants,
duplicate clicks, concurrent resume, continuation dispatch, preserved
history, and unchanged recovery attempt counts.
- Add late-gate checks for provider work, provider events, a newer
native checkpoint, missing bootstrap proof, missing stop proof, a
changed snapshot, formal approval, user Stop, agent/company pause, and a
spent budget.
- Clarify that explicit admission uses the existing certified
preparation proof.

## Verification

- Red: both real-database cases passed the saved-file,
interrupted-preparation, and refused-dispatch proof checks, but the
original successor-count assertion found zero queued runs instead of
one. The accepted requests retained `execution_recovery`.
- Green: the same cases admit one successor after two concurrent resume
calls. Continuation dispatch resolves to the latest refused attempt.
Source and cancelled-attempt history stay intact.
- Complete relevant local suites: **456/456 passed** before rebase.
Command from `server`: `../node_modules/.bin/vitest run --config
vitest.config.ts --fsModuleCache src/services/task-retry.test.ts
src/services/explicit-native-continuation.test.ts`.
- Final head `9788382c019df57899af06e81211e7c5165e7f0d`: the thirteen
new cases passed **13/13** again after rebase. Required CI and review
remain pending.
- Environment: macOS ARM64, Node 26, Vitest 5.0.3, disposable real
PostgreSQL. Tests exercise production request, admission, and
continuation services. No provider executes and no hosted task is
changed.
- Hosted recovery still requires rollout and verification through the
original queued requests.

Final reviewed head: `9788382c019df57899af06e81211e7c5165e7f0d`.
[Required
CI](https://github.com/paperclipai/paperclip/actions/runs/42273663624)
passed (56 successful checks, four expected skips, none pending or
failed). Greptile and Paperclip Review both rated this head 5/5 with no
findings; all review threads are resolved.

## Risks

The change accepts only the existing verified preparation contract. An
error label alone is insufficient. Provider-started or contradictory
state remains blocked. Saved-file, lease, approval, Stop, pause, and
budget checks remain effective. No schema, retry limit, provider
setting, account selection, or production scheduler changes.

## Model Used

OpenAI GPT-6 family via Codex, with coding and tool use. The exact model
ID and context window are unavailable in this session's metadata.

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have searched GitHub for duplicate or related PRs and linked
them above
- [x] I have either (a) linked existing issues with `Fixes: #` / `Closes
#` / `Refs #` OR (b) described the issue in-PR following the relevant
issue template
- [x] I have not referenced internal/instance-local Paperclip issues or
links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip`
URLs)
- [x] My branch name describes the change (e.g. `docs/...`, `fix/...`)
and contains no internal Paperclip ticket id or instance-derived details
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [x] All Paperclip CI gates are green
- [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups
- [x] I will address all Greptile and reviewer comments before
requesting merge

Co-authored-by: Paperclip <noreply@paperclip.ing>
2026-11-06 13:03:21 -06:00
DottaandClaude Opus 5.5 c6eecac1e0 fix(heartbeat): keep a shutdown-suspended native recovery for the next boot (#19530)
## Thinking Path

> - Paperclip is the open source app people use to manage AI agents for
work
> - The Runner Full-Stack E2E workflow tests the Runner in Daytona
sandboxes from a signed, content-addressed image
> - Every change to an audited Runner input needs a new image before a
Daytona cell can test it
> - The image job took 10 to 16.5 minutes today, and a restart chaos
campaign waits on it after each runner-side fix
> - Measurement shows two serial waits: a full Rust dependency compile
(about 5 of 6.6 minutes) and a 3.5 to 4 minute download of cached base
layers that starts only after the builder stages finish
> - There is also no way to build only the image: every dispatch reaches
a paid gate that the operator must reject
> - This pull request removes both serial waits and adds an `image_only`
dispatch input
> - The benefit is a shorter fix-to-Daytona-test loop, with every image
security check unchanged

## Linked Issues or Issue Description

**What happened?**

The `Publish verified Daytona image` job is on the critical path of the
control-plane restart chaos campaign. Builds today took 16.5 min (run
42240434011), 15 min (42253920727), 10.5 min (42259118276) and 16 min
(42265637650). Run 42264611573 failed: its RunsOn runner lost
communication with GitHub 7.6 minutes into the build step, during the
Rust compile. GitHub has no log for that job.

**Expected behavior**

A Runner source change should not recompile the locked third-party Rust
graph. Cached image layers should download while the builder stages
compile. An operator should be able to publish only the image, without a
paid gate.

**Steps to reproduce**

Read the BuildKit timeline in the logs of job 127970125495 (run
42240434011). See the stage table below.

## What Changed

- `docker/daytona-runner/Dockerfile`: compile the locked Rust dependency
graph in its own layer against placeholder targets. The layer depends
only on `Cargo.toml`, `Cargo.lock` and the crate manifest. The step
deletes the placeholder outputs and fingerprints, so the next step
always compiles the real Runner sources. The final stage still receives
only the stripped executable.
- `docker/daytona-runner/Dockerfile`: move the content-ID /
source-revision check above the two `COPY --from` steps. It does not
depend on either builder stage, so BuildKit now downloads the cached
base and CLI layers in parallel with the compile. Both copies use `COPY
--link`.
- `.github/workflows/runner-full-stack-e2e.yml`: add the boolean
`image_only` dispatch input. `authorize`, `target_lock`, `catalog` and
`daytona_image` run unchanged. Every other campaign job gets `&&
inputs.image_only != true`. `authorize` rejects `image_only` together
with TestOps inputs.
- `tests/runner-e2e/workflow-image-only.test.ts` (new): pin the job
classification, the top-level guard on each campaign job, the guard on
every protected environment, and the TestOps rejection.
- `tests/runner-e2e/README.md`: document the layer layout and the
`image_only` command.

## Verification

Measured on the same RunsOn `m7i-flex.xlarge` (4 vCPU, 16 GiB, native
x64) runner class. "Before" is master job 127970125495 (run
42240434011). "After (cold)" is this branch, job 128077687214 (run
42271236140), with no dependency layer in the registry cache yet. Its
paid gate was rejected.

| Stage | Before | After (cold dependency cache) |
|---|---|---|
| Whole image job | 16.5 min | **11.6 min** |
| Rust dependency graph | 311 s (inside one 399 s step) | 395 s (own
layer; reused from cache after a master build) |
| `paperclip-runner-core` compile | ~87 s | 65 s |
| Cached base and CLI layer download | 236 s, **after** cargo finished |
257 s, **in parallel** with cargo |
| Copy runnerd + provider pack | 20 s + 50 s | 9 s (`--link`) |
| Provider pack stage | 143 s (parallel) | 152 s (parallel) |
| Export + push | 82 s + 10 s | 81 s + 11 s |
| Dependency layer size | n/a | `target` 852 MB + registry 333 MB
(builder stage only) |

With a warm dependency cache, a Runner source change compiles only the
65 s crate step. The critical path then becomes the ~4 min cached-layer
download or the provider pack. The expected job time is about 7 to 8
min. I measure this after merge with an `image_only` dispatch (master
first, to write the cache, then a Rust-only branch change).

Disk: the instance starts with 38.76 GiB free. The dependency layer adds
about 1.2 GB uncompressed to builder storage. The final image does not
change.


- `vitest run tests/runner-e2e/workflow-image-only.test.ts
tests/runner-e2e/workflow-security.test.ts
tests/runner-e2e/daytona-image.test.ts`: the new test and all image
tests pass. Three tests in `workflow-security.test.ts` (`gates every
provider-secret job with stable actor IDs`, `keeps provider credentials
inside explicitly gated paid workflows`, `isolates private archive trust
from workflows that execute target-branch code`) fail on `origin/master`
without this change, because of `chat-catalog-testops-case.yml`. This
pull request does not change them.
- `node --test tests/runner-e2e/product-regression-testops.test.mjs`:
15/15 pass.
- No local Docker build. The Dockerfile is measured with a
branch-targeted CI dispatch whose paid gate was rejected.

## Risks

- The dependency layer keeps the Rust `target` and registry trees in a
builder-stage layer, and default-branch builds export it to the registry
cache. This adds builder disk and cache upload when `Cargo.lock`
changes. The build prints the size (`du -sk target
/usr/local/cargo/registry`).
- The dependency cache helps only after a default-branch build writes
it. Branch builds read it but never write it. This is the existing cache
policy.
- `image_only` changes the workflow, so it works only after merge to
master.
- No check is removed. Lockfile verification, cosign sign and verify,
the anonymous pull check, the provider-pack manifest match, the
default-branch-only cache write and the actor allowlist are unchanged.

## Model Used

- Claude Opus 5.5 (`claude-opus-5-5`), Anthropic, through Claude Code
with tool use (shell, GitHub CLI). Extended reasoning on.

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have searched GitHub for duplicate or related PRs and linked
them above
- [x] I have either (a) linked existing issues with `Fixes: #` / `Closes
#` / `Refs #` OR (b) described the issue in-PR following the relevant
issue template
- [x] I have not referenced internal/instance-local Paperclip issues or
links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip`
URLs)
- [x] My branch name describes the change (e.g. `docs/...`, `fix/...`)
and contains no internal Paperclip ticket id or instance-derived details
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [x] All Paperclip CI gates are green
- [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups
- [x] I will address all Greptile and reviewer comments before
requesting merge

🤖 Generated with [Claude Code](https://claude.com/claude-code)

---------

Co-authored-by: Claude Opus 5.5 <noreply@anthropic.com>
2026-11-06 13:01:16 -06:00
DottaandClaude Opus 5.5 7afb57c022 test(runner-e2e): repair restart-cell harness drift (#19538)
## Thinking Path

> - Paperclip is the open source app people use to manage AI agents for
work
> - The Runner Product E2E suite proves that agent work survives a
control-plane restart
> - A restart chaos campaign found three restart cells that fail in the
test harness, not in the product
> - A harness failure hides the real restart result, so the campaign
cannot classify these cells
> - This pull request repairs the harness drift in those cells and names
the one failure the harness cannot prevent
> - The benefit is that these cells now test restart behavior, or fail
with a clear cause

## Linked Issues or Issue Description

Refs #14811 (connector setup became one screen). Refs #19475
(completion-update restart fixture).

**What happened?**
1. `lifecycle-baseline.runner-codex.local.tool-review-restart` clicked a
"Save and continue" button. #14811 removed that button. The cell failed
during setup. After that fix, the cell also failed after the restart:
the expanded review card does not survive the post-restart reload, so
"Approve & run" was not visible.
2.
`local-session-integrity.runner-acpx-claude.local.structured-question-restart-resume`
failed with `page.goto: net::ERR_ABORTED` after the controller restart.
The old document's Vite client reloads when the replacement server
starts, and this aborts the test navigation. The code tolerated only
`TimeoutError`.
3.
`completion-updates.runner-acpx-claude.local.handoff-completion-restart`
waited for the source agent to run an instructed wait command. Claude
replied without the command (2/2 attempts), so the restart never
occurred. The cell then failed with a generic timeout.

**Expected behavior**
Each cell reaches its restart boundary and tests restart behavior. If
the boundary cannot be reached, the cell names the cause.

**Steps to reproduce**
Run `pnpm test:e2e:runner -- --max-parallel 1 --max-automatic-retries 0
--id <cell>` for each cell above on `master`.

## What Changed

- `tests/runner-e2e/connection-reviews.ts`: accept the one-screen "Check
link" step and the older "Save and continue" step. This uses the same
regex approach as `connection-flow.ts`.
- `tests/runner-e2e/runner.spec.ts` (tool review): click "Review
request" after the restart reload, on the document that acts on the
card.
- `tests/runner-e2e/chat-restart.ts`: add `gotoAfterServerRestart`. It
retries only `net::ERR_ABORTED`, within the caller's deadline and at
most 5 attempts. It still accepts `TimeoutError`. It rethrows all other
errors. The structured-question restart uses it. The existing sentinel
and durable-state assertions still prove the new document.
- `tests/runner-e2e/completion-updates.ts` and
`completion-update-flow.ts`: add `completionRestartGateSkipped` and
`completionRestartGateTimeoutDetail`. The gate poll stops at once with
`restart boundary not reached (agent skipped gate)` when no completion
turn is active and the turn that carries this task's Done facts
(`chatCompletionUpdates`, as in `completionDelivery`) succeeded or
published its reply before the gate reports `waiting`. A failed or
cancelled turn is not blamed on the agent, because delivery can retry
it; the timeout detail names it instead. The post-restart chat
navigation now uses `gotoAfterServerRestart`.
- A fixture-level gate is not possible without a product hook. The
native run finalizer publishes the completion reply inside its own
transaction, through the issue service closure. The isolated-server
entrypoint can patch only class prototypes and HTTP responses, and the
reply uses no tool call or HTTP request.
- `tests/runner-e2e/README.md`: document the skipped-gate failure.
- Docs: use `pnpm --filter @paperclipai/paperclip-runner run
build:runner-binaries` in `tests/runner-e2e/README.md`,
`tests/restart-chaos/README.md`, `tests/restart-chaos/main.ts` and
`doc/DEVELOPING.md`.
- No product code changes.

## Verification

- Unit: `pnpm exec vitest run --config tests/runner-e2e/vitest.config.ts
tests/runner-e2e/chat-restart.test.ts
tests/runner-e2e/completion-updates.test.ts
tests/runner-e2e/connection-reviews.test.ts` (36 passed).
- Typecheck: `node scripts/typecheck-test-projects.mjs tests/runner-e2e`
passed.
- Live cells, local, `--max-parallel 1 --max-automatic-retries 0`,
macOS, load average 35–65:
- `lifecycle-baseline.runner-codex.local.tool-review-restart`: PASS
(first run found the review-card reload drift, fixed in the second
commit).
-
`local-session-integrity.runner-acpx-claude.local.structured-question-restart-resume`:
PASS. A first attempt failed before the restart with `PRP command
session.open timed out` at load ~36 (environment).
-
`completion-updates.runner-acpx-claude.local.handoff-completion-restart`:
FAIL as designed, twice (before and after the review fix), with `restart
boundary not reached (agent skipped gate): completion turn … ended
succeeded without the reference gate reporting waiting`. Claude skipped
the wait both times, so this cell still does not exercise a restart.

## Risks

- Low risk. Test harness and docs only.
- The navigation retry could hide a real abort. It is limited to
`net::ERR_ABORTED`, 5 attempts and the deadline, and the test still
asserts that a new document loaded.
- The ACPX Claude completion restart cell still does not exercise a
restart when the agent skips the gate. It now reports this cause by
name.

## Model Used

- Claude Opus 5.5 (`claude-opus-5-5`), Anthropic, via Claude Code with
tool use (shell, file edit, browser test runs).

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have searched GitHub for duplicate or related PRs and linked
them above
- [x] I have either (a) linked existing issues with `Fixes: #` / `Closes
#` / `Refs #` OR (b) described the issue in-PR following the relevant
issue template
- [x] I have not referenced internal/instance-local Paperclip issues or
links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip`
URLs)
- [x] My branch name describes the change (e.g. `docs/...`, `fix/...`)
and contains no internal Paperclip ticket id or instance-derived details
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [x] All Paperclip CI gates are green
- [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups
- [x] I will address all Greptile and reviewer comments before
requesting merge

🤖 Generated with [Claude Code](https://claude.com/claude-code)

---------

Co-authored-by: Claude Opus 5.5 <noreply@anthropic.com>
2026-11-06 12:59:54 -06:00
Devin FoleyandPaperclip fd4b197f83 fix(ui): hide runner selection during agent setup (#19517)
## Thinking Path

> - Paperclip lets people manage AI agents for work.
> - Agent setup connects a harness, model, account, and computer.
> - The system already selects a qualified runner for a new agent.
> - Setup still asks users to select that internal runner.
> - The runner dropdown can be the only field in Advanced.
> - This PR removes the dropdown and hides an empty Advanced section.
> - Users keep their saved execution settings and see fewer setup controls.

## Linked Issues or Issue Description

**What existing behavior does this improve?**

Agent creation, onboarding, built-in agent setup, company import, and agent configuration.

**Subsystem affected**

The UI, setup error messages, tests, and Storybook fixtures.

**Current behavior**

Users can select a runner from a dropdown. Some setup screens place only that dropdown in Advanced. Errors can direct users to that control.

**Proposed behavior**

Remove runner dropdowns from setup and configuration. Use the existing automatic selection for new agents. Retain saved runner settings. Show Advanced only when other fields remain.

**Reason and benefit**

Users can configure agents without an extra internal execution choice. Setup also avoids an empty Advanced section.

**Breaking changes**

Users can no longer select a runner through these UI dropdowns. The API and CLI retain their runner options. Existing agents keep their saved execution settings.

**Additional context**

Related: [Default new agents to the qualified runner for their harness](https://github.com/paperclipai/paperclip/pull/15422). This PR changes the existing setup UI. It adds no harness or runtime default. The master merge retains the custom gateway placement from [#19510](https://github.com/paperclipai/paperclip/pull/19510).

## What Changed

- Remove the shared runner dropdown and its setup/configuration callers.
- Hide Advanced when it has no remaining fields. Keep command and argument settings where supported. Preserve custom gateway setup under Advanced on the Claude and OpenAI API key paths.
- Keep setup failures visible and keep the retry action outside the removed control.
- Update errors and documentation that referred to the removed dropdown.
- Update component tests and Storybook fixtures for the new UI states.
- Make Legacy first-task evals resume an API-configured setup record. Record that path separately from fresh automatic onboarding.

## Verification

- Latest master integration (`187c0f6d6e5`): 276 onboarding/provider-connection tests passed across six files. UI typecheck and build passed. Token gates, query-error rendering checks, and the Storybook catalog check passed. The conflict resolution retains master's bounded connection tests and cancellation while removing the obsolete runner instruction. The first test command used the wrong working directory and failed before collecting tests; the corrected invocation from `ui/` passed.
- Earlier branch verification passed: full workspace build and typecheck, 1,037 focused UI/service tests, 49 heartbeat provider contract tests, eval typecheck, and 30 map/catalog tests.
- The full local `pnpm test:run` run passed all six chat integration shards (1,931 tests). It was stopped for the master merge before the complete suite finished. The [complete CI run](https://github.com/paperclipai/paperclip/actions/runs/42264662642) passed on the previous head `72e1699`.
- Current head `a097c8369d079c839e78661a2206cfa62c5210e0`: [full CI](https://github.com/paperclipai/paperclip/actions/runs/42273168268) passed. PR checks total 55 passed and 3 skipped, with none failed or pending. Greptile reviewed this head at 5/5 with no actionable findings or unresolved review threads.
- Live browser/provider evals have not run. The Legacy eval change has no live qualification claim.

## Risks

- Removing the dropdown changes the setup UI. Existing API and CLI runner choices remain available.
- Conditional Advanced sections must retain valid command and argument fields.
- Legacy first-task evals now prove setup resumption. They do not prove the fresh-agent automatic default.
- No schema change or data migration is included.

## Model Used

OpenAI `gpt-6.1-sol`, through Codex in T3 Code. Reasoning effort: `xhigh`. The model used file editing, shell commands, and test tools. The harness does not expose the context window size.

## Checklist

- [x] I have included a thinking path that traces from project context to this change
- [x] I have specified the model used (with version and capability details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate planned core work
- [x] I have searched GitHub for duplicate or related PRs and linked them above
- [x] I have either (a) linked existing issues with `Fixes: #` / `Closes #` / `Refs #` OR (b) described the issue in-PR following the relevant issue template
- [x] I have not referenced internal/instance-local Paperclip issues or links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip` URLs)
- [x] My branch name describes the change (e.g. `docs/...`, `fix/...`) and contains no internal Paperclip ticket id or instance-derived details
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [x] All Paperclip CI gates are green
- [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups
- [x] I will address all Greptile and reviewer comments before requesting merge

Co-Authored-By: Paperclip <noreply@paperclip.ing>
2026-11-06 10:58:42 -08:00
Devin FoleyandPaperclip f0006c7783 fix(workspaces): contain inventory deadline aborts (#19543)
A capture deadline can expire while file identity validation awaits the filesystem. Recheck cancellation before creating the inventory read stream so the expired capture rejects without terminating the server.

All 224 affected capture and archive tests pass, including real Node subprocess cancellation regressions. Final-head CI passes 54 checks, and Greptile scores 5/5 with no unresolved findings.

Co-Authored-By: Paperclip <noreply@paperclip.ing>
2026-11-06 10:45:47 -08:00
DottaandClaude Opus 5.5 07ddf9a5c2 fix(native): keep accepted results when runner close cannot prove suspension (#19525)
## Thinking Path

> - Paperclip is the open source app people use to manage AI agents for
work.
> - Native runs persist an accepted result first. The Runner then closes
and suspends its session.
> - Under heavy host load, the Runner close can fail to prove a durable
suspension after the result is accepted.
> - The executor then kept its finalization lease. The heartbeat
finalizer got `native_finalization_lease_busy`, and the run ended
`failed/adapter_failed`.
> - The provider work was complete. Only Runner bookkeeping failed, so
the run must not fail.
> - This pull request hands the exact lease to finalization and
completes the run from its accepted result.
> - The benefit is that an accepted result stays accepted, independent
of host load.

## Linked Issues or Issue Description

**What happened?**

A native ACPX Claude run asked a structured question. The control plane
accepted its result (`Waiting for…`) and recorded `run.terminal` with
`runTerminalState=succeeded`. The Runner close then took about 8.6 s.
Its `runner.suspend` command ended `failed`, but the durable Runner
state was `suspended` with a matching identity. The close threw
`NativeSessionCloseUnrecoverableError`. The executor emitted
`native.post_result_failure` (`category: runner_settlement_incomplete`,
`resultAlreadyAccepted: true`) and rethrew `native_session_lease_lost`.
Its finalization lease stayed held (its TTL is 20 minutes).
`finalizeNativeRun` got `native_finalization_lease_busy`, and the run
ended `failed/adapter_failed`. No restart was in progress. Host load
average was about 40.

**Expected behavior**

After the control plane accepts a result, finalization bookkeeping must
not fail the run. The run settles from its accepted result. Repair of
the Runner checkpoint stays with the existing next-run admission rules.

**Steps to reproduce**

Run `pnpm exec vitest run
src/services/heartbeat/runtime-execution.test.ts -t "accepted local
result"` in `server/`. The test uses the real executor, the real
control-plane result commit, and embedded PostgreSQL. The provider
boundary accepts a result and then throws
`NativeSessionCloseUnrecoverableError`. On the base revision, the
finalization row keeps the executor lease (`phase:
workspace_finalizing`) and the finalizer reports `lease_busy`.

**Paperclip version or commit**

Base `ff1d1dea5d`. The incident was on `819420a60a`.

## What Changed

- `native-session-executor.ts`: after the rejected failure write proves
an accepted result under the exact, unexpired lease, the executor
releases that lease to finalization. It uses the same exact-authority
predicates as the normal release. Before, the lease stayed held until
its TTL expired.
- `runtime-execution.ts`: for `runner_settlement_incomplete` on a local
workspace (no workspace sync and no remote workspace authority),
Paperclip records `workspace_finalize` as succeeded, finalizes the
accepted result, and returns it to the ordinary completion path.
- New `native-accepted-result-settlement.ts`: rebuilds the adapter
result from the durable accepted result row, its terminal, the run's
native session, and the accepted usage checkpoint. The result carries
the closed `nativePostResultFailure` diagnostic. It contains no provider
text.
- Other post-result categories (for example `io_not_found`) keep their
workspace-failure handling. They now also reach finalization at once,
instead of after the lease TTL.
- `doc/execution-semantics.md`: describes the settlement.

## Verification

- Red, then green: `settles an accepted local result when runner close
cannot prove suspension` and `keeps workspace failure handling for other
accepted-result failures on a local workspace` in
`server/src/services/heartbeat/runtime-execution.test.ts`. Both failed
on the base revision with the executor lease still held. Both pass with
this change.
- Safety case `settles an accepted local result ...
(workspace-check-failed)`: when the `workspace_finalize` check fails,
the run keeps the existing failure path. Case `terminal-unreadable`:
when the accepted result cannot be rebuilt, only a failed
`workspace_finalize` record is written.
- `pnpm exec vitest run
src/services/heartbeat/runtime-execution.test.ts`: all pass (some cases
time out at 30 s only under host load above 40; they pass on a narrow
rerun). This includes the 14 existing post-result diagnostic and
authority cases (expired, replaced owner, generation, attempt, boot,
pid, process start, stopped, lock busy, and others).
- `pnpm --filter @paperclipai/server typecheck`: pass.
- Live cell
`local-session-integrity.runner-acpx-claude.local.structured-question-restart-resume`
(real ACPX Claude, local runner): 3 runs at host load average about 40.
Runs 1 and 2 passed. Run 3 hit the fault naturally: the first run
emitted `native.post_result_failure` (`runner_settlement_incomplete`)
and now ended `run succeeded` (before this change it ended
`failed/adapter_failed`). The cell then failed later, in the resume run
after the answer: `runner_state_identity_mismatch:
prior_owner_terminal_state_indeterminate;
retirement_refused=target_not_sandbox_runner`. That is a separate
follow-up (see Risks).

## Risks

- A changed lease handoff. The executor releases the lease only after
the rejected failure write proves an accepted result under the exact
owner, attempt, controller generation, controller identity, and an
unexpired lease. A stale or replaced owner does not release anything. A
failed release is bounded and best effort. The old behavior then
applies.
- The run now completes as `succeeded` while the local Runner checkpoint
is not proven suspended. The next run on the same session then meets the
existing fence: the continuity-break retirement
(`retireFinishedPerTurnRunnerdOwner`) accepts only sandbox Runners, so a
local Runner is refused with `target_not_sandbox_runner` and its state
root is quarantined. This PR does not change that fence. Extending the
retirement to local Runners needs its own proof that the local Runner
process stopped, and is a follow-up.
- Settlement happens only when the accepted result and its terminal are
rebuilt first, and the `workspace_finalize` record then succeeds. A
failed branch or plugin workspace check keeps the failure path.
- Synced and remote workspaces are not changed. They keep their
copy-back retry path.

## Model Used

- Claude Opus 5.5 (`claude-opus-5-5`), Anthropic, used through Claude
Code with tool use (shell, file edits, test runs). Extended reasoning
was on.

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have searched GitHub for duplicate or related PRs and linked
them above
- [x] I have either (a) linked existing issues with `Fixes: #` / `Closes
#` / `Refs #` OR (b) described the issue in-PR following the relevant
issue template
- [x] I have not referenced internal/instance-local Paperclip issues or
links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip`
URLs)
- [x] My branch name describes the change (e.g. `docs/...`, `fix/...`)
and contains no internal Paperclip ticket id or instance-derived details
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [ ] All Paperclip CI gates are green
- [ ] Greptile is 5/5 with no open P2s, recommendations, or follow-ups
- [x] I will address all Greptile and reviewer comments before
requesting merge

Related: #19126 added the closed post-result diagnostic that this change
uses.

🤖 Generated with [Claude Code](https://claude.com/claude-code)

---------

Co-authored-by: Claude Opus 5.5 <noreply@anthropic.com>
2026-11-06 12:36:34 -06:00
Nicky LeachandClaude Opus 5.5 3b3037aab5 fix(ci): run the sandbox provider tests in required CI (#19533)
## Thinking Path

> - Paperclip is the open source app people use to manage AI agents for
work
> - Sandbox provider plugins (Daytona, E2B, Cloudflare, Kubernetes,
Modal, and others) run agents in remote sandboxes
> - The providers are outside the root pnpm workspace, so `pnpm
test:run` and the CI test lanes never run their Vitest suites
> - paperclipai/paperclip#18839 typechecks those tests, but a test that
fails at runtime still fails nothing
> - The providers have about 1,040 tests, and they finish in about 15
seconds on Linux
> - This pull request adds a required `Sandbox provider tests` job that
runs them when a change can affect them
> - The benefit is that a broken provider, plugin SDK, or shared
contract fails CI on the pull request instead of in a release or a paid
end-to-end run

## Linked Issues or Issue Description

Refs #18839

**What happened?**

No CI job runs the sandbox provider tests. `runner-full-stack-e2e.yml`
builds the Daytona plugin for a paid nightly run, but it does not run
any provider's `pnpm test`.

**Expected behavior**

A pull request that can break a provider runs that provider's tests, and
a failure blocks `ci / verify`.

**Steps to reproduce**

Add `expect(1).toBe(2)` to a test in
`packages/plugins/sandbox-providers/e2b/src`. Open a pull request. CI
stays green.

## What Changed

- Added `scripts/test-sandbox-providers.mjs` and its tests. The script
installs the providers through `typecheckTestPrograms` with no programs,
because that function already owns the provider install and the plugin
SDK link. Then it runs each provider's `pnpm test`, four at a time, and
prints each provider's output as one block. It fails if a suite fails or
if no provider has a test script.
- The script skips `cloudflare/bridge-template`, because Cloudflare's
Vitest config already runs those tests.
- Added the `sandbox_provider_tests` job to
`.github/workflows/pr-trusted.yml`, and made `ci / verify` require its
result.
- Added the `//#ci:sandbox-providers` task to `turbo.json` and its lane
to `.github/ci-task-matrix.json`. The CI planner runs the job only when
a change touches `packages/plugins/sandbox-providers/**`,
`packages/plugins/sdk/**`, or `packages/shared/**`. `packages/shared` is
the plugin SDK's only workspace dependency. Global CI inputs, such as
`scripts/**`, `.github/**`, `pnpm-lock.yaml`, or any `package.json`,
still select every job.
- The job turns off core dumps. A Daytona capacity test kills a process
at a file-size limit inside the exported directory. If core dumps are
on, the core file joins the export, and the test sees 12 files instead
of 11.
- Updated the job lists in `scripts/__tests__/e2e-shard.test.mjs` and
the job count in `.github/scripts/tests/ci-profile.test.mjs`. Added
planner tests to `.github/scripts/tests/ci-plan.test.mjs`. One of these
tests fails if the plugin SDK gets a new workspace dependency that is
not in the job's inputs.
- Added the new test file to `test:release-registry`, and documented the
script in `doc/DEVELOPING.md`.

## Verification

- `node scripts/test-sandbox-providers.mjs` on macOS: 8 of 9 suites pass
in 31.6 s, including the install. Kubernetes fails 12 `file-sync` tests,
because macOS has no `/proc/self/fd`. Some Daytona tests skip, because
they need GNU `tar` and coreutils.
- The same script in a Linux container (`node:24`, a non-root user, core
dumps off): all 9 suites pass, with 1,012 tests passed and 26 skipped.
The script took 15 s after the install.
  - Kubernetes: 205 passed.
  - Daytona: 590 passed and 16 skipped.
- With core dumps on, Daytona's `preserve literal capacity repair` test
fails. The export includes a `core` file. With `--ulimit core=0`, it
passes.
- To look for timing failures under load, I ran the whole script 12 more
times in the container, limited to 2 CPUs (8 runs) and 1 CPU (4 runs).
All 12 runs passed. They took 45 to 76 s on 2 CPUs and 73 to 102 s on 1
CPU.
- `ubuntu-latest` has `zstd`, and my container did not, so some Daytona
tests skipped in those runs. With `zstd` installed, Daytona passed with
598 tests and 8 skipped, and only the live tests skipped. One earlier
`zstd` run failed while the stress runs used the same CPUs, and I did
not capture its output. The next run passed.
- `node --test` on every test that reads `pr-trusted.yml`, the CI
planner, or the task matrix: 816 passed. These include
`.github/scripts/tests/*.test.mjs`,
`scripts/__tests__/e2e-shard.test.mjs`,
`scripts/ci/test-selection-workflow.test.mjs`, and the new tests.
- `pnpm run test:release-registry` on macOS: 251 of 255 pass, including
the new tests. The 4 failures are `wait_for_npm_package_versions` tests
in `scripts/release-lib.test.mjs`. They fail the same way on master on
the same machine, and CI runs this suite on Linux.
- `actionlint` 1.7.7 reports no errors on the changed workflow.
- I called `planTasks` from `.github/scripts/ci-plan.mjs` with one
changed file at a time. `server/src/index.ts` and `ui/src/App.tsx` leave
`sandbox_provider_tests` off.
`packages/plugins/sandbox-providers/e2b/src/plugin.ts` and
`packages/shared/src/index.ts` turn it on.

This pull request cannot run its own new job. `pr.yml` calls
`pr-trusted.yml@master`, so the job first runs on pull requests after
this one merges. After merge, check the first pull request that changes
a provider or `packages/shared`.

## Risks

- **First real run is after merge.** I measured the time on Linux in
Docker, not on a CI runner. CI runners are about 2 times slower than my
machine, so I expect about 2 to 3 minutes for the job, including the
dependency restore. The job runs in parallel with the other jobs, and
the slowest required job takes about 13 minutes. So the job should not
make CI slower.
- **Open provider pull requests.** After this merges, open pull requests
that change a provider run its tests. If those tests fail, `ci / verify`
blocks them until they are fixed.
- **`packages/shared` changes often.** Any change there runs this job. A
Linux-only provider failure would block those pull requests. All suites
pass on Linux today.
- **One unexplained Daytona failure.** One Daytona run with `zstd`
failed under CPU contention, and I did not capture its output. Some
Daytona tests have short deadlines. If the job is flaky after merge,
quarantine the failing test or revert the job, and do not leave `ci /
verify` red.
- **Path rules can be too narrow.** If a provider starts to import
another workspace package, a change to that package does not run this
job. The plugin SDK dependency test covers the SDK. It does not cover a
provider that imports a workspace package directly. Today no provider
does.
- **Overlap with paperclipai/paperclip#19489 and
paperclipai/paperclip#19522.** Both pull requests change the provider
install in `scripts/typecheck-test-programs.mjs`. This pull request does
not edit that file. It calls the same install function, so it uses their
install changes when they merge. All three pull requests edit the same
section of `doc/DEVELOPING.md`, so a small text conflict is possible.

> For core feature work, check [`ROADMAP.md`](ROADMAP.md) first and
discuss it in `#dev` before opening the PR. Feature PRs that overlap
with planned core work may need to be redirected — check the roadmap
first. See `CONTRIBUTING.md`.

## Model Used

- Anthropic Claude Opus 5.5 (`claude-opus-5-5`), in Claude Code with
tool use (shell, file edits, GitHub CLI, Docker). Extended reasoning was
on.

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have searched GitHub for duplicate or related PRs and linked
them above
- [x] I have either (a) linked existing issues with `Fixes: #` / `Closes
#` / `Refs #` OR (b) described the issue in-PR following the relevant
issue template
- [x] I have not referenced internal/instance-local Paperclip issues or
links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip`
URLs)
- [x] My branch name describes the change (e.g. `docs/...`, `fix/...`)
and contains no internal Paperclip ticket id or instance-derived details
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [x] All Paperclip CI gates are green
- [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups
- [x] I will address all Greptile and reviewer comments before
requesting merge

🤖 Generated with [Claude Code](https://claude.com/claude-code)

Co-authored-by: Claude Opus 5.5 <noreply@anthropic.com>
2026-11-06 10:34:03 -08:00
Nicky LeachandClaude Opus 5.5 e3041f5481 fix(ci): let the lockfile bot own the sandbox provider lockfiles (#19522)
## Thinking Path

> - Paperclip is the open source app people use to manage AI agents for
work.
> - The repository has a supply-chain rule: contributors do not commit
lockfiles. A bot and verified Dependabot commits write them.
> - The rule checks only the root `pnpm-lock.yaml`.
> - The sandbox providers are outside the root workspace, so they have
two more pnpm lockfiles. Pull requests edited them by hand, for example
#12791, #18839 and #19489.
> - This pull request makes the same rule and the same bot cover those
two lockfiles.
> - The benefit is one lockfile rule for every managed pnpm lockfile,
and no lockfile edits in contributor pull requests.

## Linked Issues or Issue Description

Refs #19489

**What existing behavior does this improve?**

The lockfile policy and the lockfile refresh bot.

**Subsystem affected**

CI: `.github/scripts/lockfile-trust.mjs`,
`.github/workflows/refresh-lockfile.yml`, and the sandbox provider
installs.

**Current behavior**

`lockfile-trust.mjs` blocks contributor edits to `pnpm-lock.yaml` only.
A contributor can edit
`scripts/typecheck-sandbox-providers/pnpm-lock.yaml` or
`packages/plugins/sandbox-providers/daytona/pnpm-lock.yaml`, and CI
passes. The refresh bot does not update these files.
`typecheck:test-programs` fails on a stale provider lockfile and tells
the contributor to commit a new one.

**Proposed behavior**

The policy blocks contributor edits to all three lockfiles. The refresh
bot regenerates all three after merge. CI resolves a stale provider
lockfile in place for the run, as it does for the root lockfile.

**Reason and benefit**

Lockfile content comes only from the bot or from verified Dependabot
commits. Contributors do not need to run pnpm in special folders.

**Breaking changes**

None. A pull request that edits a provider lockfile now fails the policy
check. Remove the lockfile change from the pull request. The bot commits
it after merge.

## What Changed

- `lockfile-trust.mjs` now exports `LOCKFILES`: the root lockfile, the
shared sandbox provider lockfile, and the Daytona lockfile. The policy
blocks contributor edits to each of them. A Dependabot pull request must
match a verified Dependabot commit for each lockfile that it changes.
The `merged` command and the reporting-lock proof still use only the
root lockfile.
- `check-pr-lockfile.mjs` (advisory check) uses the same list.
- `refresh-lockfile.yml`:
- A job-level `LOCKFILES` env lists the same three files. A test checks
that it equals the policy list.
- A new step regenerates the two provider lockfiles with
`--resolution-only --ignore-scripts --no-frozen-lockfile`.
- The unexpected-changes check, the change check, and `git add` cover
all three lockfiles.
  - The release-age gate checks the added versions in every lockfile.
- A held refresh saves all three lockfiles at their repository paths,
with a `source-locks.sha256` file. The next run reuses them only if
every master lockfile is unchanged. An artifact in the old format is not
reused.
  - The PR title is now `chore(lockfile): refresh pnpm lockfiles`.
- `check-lockfile-release-age.mjs` accepts more than one
`--base`/`--head` pair.
- `scripts/typecheck-test-programs.mjs`: if the frozen install of the
provider workspace fails, the script resolves the lockfile in place and
installs frozen again.
- `scripts/build-standalone-public-packages.mjs`: the same fallback
applies to a package with a committed lockfile (Daytona). `release.sh`
already restores tracked files when it exits.
- `doc/DEVELOPING.md` and `doc/RELEASE-AUTOMATION-SETUP.md` describe the
managed lockfiles. They also say that the Pi and Kimi distribution
lockfiles stay hand-managed, because they hold attested provider pins.

## Verification

- `node --test .github/scripts/tests/*.test.mjs
scripts/__tests__/build-standalone-concurrency.test.mjs`: 731 tests
pass. New tests cover:
- the policy for provider lockfiles, including a real git history with a
Dependabot commit and a later hand edit
  - the workflow and policy lists match
  - the unexpected-changes check, run with bash against a fixture
- a held refresh round trip, and its invalidation when a provider
lockfile changes on master
  - the release-age gate across lockfile pairs
  - the inline fallback in both install scripts
- `node --test scripts/typecheck-test-programs.test.mjs`: the install
tests pass. Two tests fail locally only because this worktree has no
root `node_modules` (no `tsc`). They also fail without this change.
- I ran the new bot commands on master with pnpm 9.15.4. No package
version changed. pnpm 9.15.4 removes `libc:` fields and adds
`deprecated:` notes, so the first refresh is a metadata-only change. The
release-age gate passes it because it adds no versions.
- I ran the release-age and held-lock steps locally with bash against
this commit. The gate reported `eligible=true`, and `sha256sum --check`
accepted the saved hashes.
- The workflow YAML parses, and `bash -n` accepts every `run` block.
- Not testable before merge: the policy job loads `lockfile-trust.mjs`
from the base branch, so the new rule applies only to pull requests
opened after this merges. The refresh workflow runs only on master.

## Risks

- The release build now resolves a stale Daytona lockfile in place, from
the registry. The root release install already resolves without a frozen
lockfile, so this is the same level of trust.
- The paid runner e2e job still installs Daytona with
`--frozen-lockfile`. After a Daytona manifest change merges, its Daytona
cases fail until the bot's refresh merges. This matches the rule that
paid jobs refuse a new root lockfile until its refresh merges.
- Dependabot pull requests for the provider entries in #19489 change a
provider lockfile. They pass only if each lockfile matches a verified
Dependabot commit, the same as for the root lockfile.
- Low risk otherwise: the bot keeps its existing token, environment, and
merge rules.

## Model Used

- Claude Opus 5.5 (`claude-opus-5-5`) in Claude Code, with tool use
(shell, file edits, and git).

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have searched GitHub for duplicate or related PRs and linked
them above
- [x] I have either (a) linked existing issues with `Fixes: #` / `Closes
#` / `Refs #` OR (b) described the issue in-PR following the relevant
issue template
- [x] I have not referenced internal/instance-local Paperclip issues or
links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip`
URLs)
- [x] My branch name describes the change (e.g. `docs/...`, `fix/...`)
and contains no internal Paperclip ticket id or instance-derived details
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [x] All Paperclip CI gates are green
- [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups
- [x] I will address all Greptile and reviewer comments before
requesting merge

🤖 Generated with [Claude Code](https://claude.com/claude-code)

Co-authored-by: Claude Opus 5.5 <noreply@anthropic.com>
2026-11-06 10:07:57 -08:00
DottaandPaperclip 5d25117ffa fix(heartbeat): recover deferred dependency completion wakes (#19457)
## Thinking Path

> - Paperclip is the open source app people use to manage AI agents for
work.
> - Tasks wait for other tasks through saved dependency edges and wake
requests.
> - A dependency can finish while its assignee answers a question about
the blocked task.
> - Paperclip saves the completion wake behind that active turn.
> - Recovery did not find that saved wake unless it also contained a
comment or an interaction response.
> - This pull request restores that wake through the existing release
and dispatch checks.
> - The task can then continue after the active turn and its cleanup
finish.

## Linked Issues or Issue Description

**What happened?**

A task stayed blocked after its dependency finished. The completion wake
was saved while an audit turn was active. The wake stayed deferred after
that turn ended. It had no comment or interaction response, so both
recovery queries and the input guard excluded it.

**Expected behavior**

Recover the saved dependency wake when the prior turn and its cleanup
finish. Start one dependency continuation under the current execution
rules.

**Steps to reproduce**

1. Run a question response on a dependency-blocked task.
2. Finish the dependency while the response is active.
3. Save the completion wake behind that response.
4. Finish the response and its environment cleanup, or restart the
workers.
5. Observe that the saved wake has no run.

**Paperclip version or commit**

Reproduced against `70d23612dd`. Rechecked against `2f35eb1080` with the
final regression fixture.

**Deployment mode**

Source checkout on Linux x64, Node 25.9.0, pnpm 9.15.4, and isolated
embedded PostgreSQL.

Related work: #16673 added recovery for saved messages. #17288 and
#16966 address assignment wakes after cleanup. This change covers
dependency completion receipts with no message.

## What Changed

- Include saved `issue_blockers_resolved` receipts in worker
reconstruction and stranded queue selection.
- Let these receipts pass the input guard without a comment or
interaction response.
- Use the existing release transaction and dispatch checks. Add no
timer, migration, or direct task status change.
- Add process-backed regression cases for restart, cleanup release,
cancellation, agent pause, pending cleanup, and unresolved blockers.
- Update the dependency wake recovery document.

- Share the dependency-wake payload predicate and SQL fragment across
reconstruction and stranded receipt admission, so these eligibility
checks have one owner.

## Verification

- The final regression fails on the base code: the receipt stays
`deferred_issue_execution` and has no successor. The same test passes
with the fix.
- Six focused cases pass. They use real PostgreSQL and a real process
adapter. They check saved output, one dependency continuation, clean
task locks, repeat recovery, and execution gates. They do not call a
model provider.
- Three nearby suites pass: 125 tests across queue wiring, dependency
scheduling, and dependency recovery.
- Final-head server layered typechecking passes with
`PAPERCLIP_TYPECHECK_LOW_MEMORY=1`. Whitespace and module boundary
checks pass. Two parallel checker attempts reached the sandbox memory
limit; the completed low-memory check covers all source and test layers.
- The full deferred-receipt suite passes: 45 tests. Combined with the
nearby suites, 170 local tests pass. These results cover head
`8f9d3aa6ac19a6d2532bd869eb8adda7cf122a5a`. Required CI remains in
progress.
- Local workspace typechecking and build stop at the Runner Rust step
because Cargo is absent. The full local test suite was not run. Required
CI must supply broad coverage.
- The hosted incident has not been recovered or deployed from this
branch.

- Review follow-up at `182385e9bc433adac06440997de7e4cfbf889a72`: normal
merge of master `0d03610d2f73b7cd799547e43929bb2303319024`; no conflict
or history rewrite. All 54 receipt/helper cases pass on macOS arm64,
Node 26.4.0, real embedded PostgreSQL and process adapters. The six
dependency continuation and safety cases also pass separately. Module
boundaries and whitespace checks pass. No assertion, timeout, execution
gate or retry policy changed for this extraction.
- Current shared, SDK and adapter-utils source builds pass. The first
broad local server typecheck read stale borrowed adapter declarations;
rebuilding them exposed nominal type duplication between the borrowed
workspace and this checkout. It is not counted as a server typecheck
pass. All 30 SDK and 169 adapter runtime JavaScript outputs match the
previously tested artifacts. Final revision
`182385e9bc433adac06440997de7e4cfbf889a72` now passes all 55 applicable
CI checks (three skipped, one neutral review), including clean-workspace
typecheck, build and broad tests. [CI
result](https://github.com/paperclipai/paperclip/actions/runs/42262173960).
Greptile and Paperclip review both give 5/5 with no open findings.

## Risks

- Recovery now considers a saved dependency receipt with no message.
Current ownership, source finalization, cleanup, pause, cancellation,
and dependency checks still control execution.
- The scan remains bounded and uses existing transaction notifications
and restart reconstruction. The integration checks verify that it
becomes quiet after settlement.

## Model Used

- OpenAI Codex, based on GPT-6. The exact provider model ID and context
size are not exposed in this session. Used reasoning, tool calls,
TypeScript edits, and test execution.

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have searched GitHub for duplicate or related PRs and linked
them above
- [x] I have either (a) linked existing issues with `Fixes: #` / `Closes
#` / `Refs #` OR (b) described the issue in-PR following the relevant
issue template
- [x] I have not referenced internal/instance-local Paperclip issues or
links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip`
URLs)
- [x] My branch name describes the change (e.g. `docs/...`, `fix/...`)
and contains no internal Paperclip ticket id or instance-derived details
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [x] All Paperclip CI gates are green
- [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups
- [x] I will address all Greptile and reviewer comments before
requesting merge

---------

Co-authored-by: Paperclip <noreply@paperclip.ing>
2026-11-06 11:49:38 -06:00
DottaandPaperclip e3fb4bc73a fix(native): recover saved listener startup failures (#19479)
## Thinking Path

> - Paperclip manages AI agents and their work.
> - Native recovery must preserve saved work and respect current task
authority.
> - A closed local API listener can stop startup before a provider
starts.
> - #19462 gives new failures a bounded bootstrap retry.
> - Older saved failures still have a generic terminal code and a
recovery hold.
> - This pull request verifies the old producer outcome and uses the
existing safe replacement path.
> - Eligible tasks continue once. Unknown provider outcomes and user
holds remain blocked.

## Linked Issues or Issue Description

Refs: #19462

**What happened?**

A restart can leave an old listener startup failure in
`terminal_failure` with `native_session_interrupted`. Startup recovery
does not claim it after #19462. A completed file recovery can also
retain its no-replay hold.

**Expected behavior**

Continue automatically when durable records prove that no provider
started, the source stopped, and the current files were saved. Keep the
existing attempt budget and normal admission checks.

**Steps to reproduce**

1. Close the actual API listener after a fresh native coordinator claim.
2. Persist the old executor's generic failure. Save the workspace and
confirm source termination.
3. Restart recovery. The baseline schedules no successor. The repair
schedules one successor after all receipts pass.

**Paperclip version or commit**

Baseline: `0252421d5c`. Old failure producer: `2f35eb1080`.

**Deployment mode**

Built from source. Local macOS arm64, Node 26.4.0, real embedded
PostgreSQL, independent filesystem execution. No external AI service is
used by the controlled acceptance.

## What Changed

- Recognize the exact saved local-listener guard through one proof
predicate shared by discovery and the locked transaction.
- Require a fresh first attempt, matching execution bindings, no prior
provider lineage, no provider events or tool calls, no checkpoint or
admission receipt, and no cancellation.
- Reuse current snapshot, exact stop, source block, attempt budget, and
successor idempotency checks.
- Wait for completed source file-recovery receipts. Retire only that
same source's verified preservation hold in the successor transaction.
- Bound discovery to 100 candidates per pass, keep completed history
quiet, and wake through existing transactional producer notifications.
- Retain retries after transient database and final ownership-proof
errors; advance the bounded cursor and force a rescan so a failing page
cannot hide later work.
- Let only the replacement duty discharge a proved-empty notification
during drain through its existing read-only readiness check, once per
notification generation. Keep real work and concurrent changes
outstanding without running replacement during drain.
- Wake replacement at canonical local-stop proof writes and the existing
dispatch eligibility boundary; these hints grant no new execution
authority.
- Add database regressions, scheduler quietness checks, real controller
handoff coverage, and an opt-in controlled Runner continuation.

## Verification

Final production head: `0df41b2fef2644195d1224d36984af3827da3e3b`.

Local environment: macOS arm64, Node 26.4.0, TypeScript 7.0.2, Vitest
5.0.3, frozen-lockfile dependencies. Tests execute freshly;
`--fsModuleCache` reuses only content-validated module transforms.

- Native safe replacement: 62/62 PASS on isolated PostgreSQL 17 (63.18
seconds), including clean per-suite database disposal. All 62 assertions
also passed on embedded PostgreSQL 18 beta, but its Darwin cleanup hook
timed out; that invocation is not counted as a pass. Docker's disk was
full, so the disposable PostgreSQL 17 data used a size-limited RAM
mount, with no host mounts. The owned container was removed afterward.
- Actual stopped-process producer suite: 31/31 PASS. A real exited child
produces the stop receipt, and its replacement notification settles only
after the outer transaction commits.
- Workspace and separate-process drain regressions: 33/33 PASS (75.90
seconds).
- Shared coordinator and execution-control lifecycle checks: 39/39 PASS
(16.43 seconds). Pending work, concurrent changes, cold startup,
shutdown, and passive drain boundaries remain covered.
- Actual suppressed Cloud routine/drain workflow: PASS (34.64 seconds),
using the unchanged test and timeouts. Its matching local RED reproduced
CI's 462-query, zero-pending-query, one-idle-hold timeout after an
admitted write committed during drain (69.46 seconds).
- Actual historical controller handoff: PASS (48.40 seconds). A separate
controller loads the original executor from `2f35eb1080`, writes its
generic listener failure, and exits. Recovery at the final head admits
exactly one successor. The real Rust Runner and controlled Codex process
complete governed `paperclip_finish`; attempt two commits and the saved
file remains intact. Only the child loads the old artifact, and both
isolated artifacts are restored afterward. Rust source subtree
`77961b70f177ec3c38d11abcaec92fd3d0e96ec0` matches the built binary. No
external AI service is used.
- Seven corrected existing fixtures pass: transactional stop-proof calls
(5 cases) and notification inventory (2 cases). Their earlier CI
failures exposed fixture calls outside the documented transaction and an
outdated expected queue set.
- Server typecheck: PASS.

Red/green proofs also cover the original saved failure on baseline
`0252421d5c` (zero successors instead of one), held-history quietness,
bounded forward scanning through 100 parked rows and concurrent wakes,
real snapshot/cleanup producer notifications, actual issue-row lock
timeout, and task/history eligibility notifications. An obsolete
prior-run question can be skipped to request another proof check; actual
skip while the task is paused or the source owns provider tool activity
schedules no successor.

The failed-page regression starts with 25 persistent verifier errors and
a healthy candidate 26. Baseline RED repeats the first page. Repair
GREEN advances the healthy candidate, revisits the original failures
after their fault clears, creates all 26 successors exactly once, and
becomes quiet.

Greptile is SUCCESS, 5/5 on the exact final head (2026-11-06 17:09:21
UTC). Final-head CI is GREEN: 56 successful checks, three intentional
skips, one neutral result, and no pending or failing checks. [Attempt
two and
results](https://github.com/paperclipai/paperclip/actions/runs/42258352876/attempts/2)
include passing build, typecheck, Rust, native server, package, browser
E2E, serialized server, general server/chat tests, and final
verification. Five jobs in the first attempt were interrupted together
at 17:13:12 UTC; the native-server log records an explicit runner
shutdown signal. The single infrastructure retry reran only those five
jobs and dependent verification, preserving the 49 successful checks on
the unchanged head. No timeout was weakened, and setup failures or
interrupted invocations are not counted as passes.

Focused commands from the repository root:

```sh
./server/node_modules/.bin/vitest run --project @paperclipai/server server/src/services/remote-workspaces.integration.test.ts server/src/services/native-runtime/native-runner-restart-preparation.integration.test.ts -t 'native safe-replacement decision|reconciles the drained remote backend' --fsModuleCache --reporter=dot
./server/node_modules/.bin/vitest run --project @paperclipai/server server/src/__tests__/execution-control-work.test.ts server/src/__tests__/delivery-work-coordinator.test.ts -t 'execution-control lifecycle|work coordinator' --fsModuleCache --reporter=dot
node node_modules/typescript/bin/tsc -p server/tsconfig.json --noEmit --pretty false
```

The historical acceptance sets `PAPERCLIP_TEST_HISTORICAL_LISTENER=1`
and uses an original-executor child artifact with a `try/finally`
restore. Normal regressions require no Rust binary.

## Risks

- Compatibility is deliberately limited to positively proved fresh
remote startup failures. Other old ambiguous failures remain held.
- Existing provider work, a changed task block, incomplete preservation,
or revoked authority must prevent execution. Normal retry admission
remains in control.
- This PR does not deploy the change or mutate a hosted task. Hosted
recovery still requires the repaired revision and all current proof
gates.

## Model Used

OpenAI GPT-6 through Codex, with reasoning, tool use, and code
execution. The exact backend model identifier and context window are not
exposed in this session.

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have searched GitHub for duplicate or related PRs and linked
them above
- [x] I have either (a) linked existing issues with `Fixes: #` / `Closes
#` / `Refs #` OR (b) described the issue in-PR following the relevant
issue template
- [x] I have not referenced internal/instance-local Paperclip issues or
links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip`
URLs)
- [x] My branch name describes the change (e.g. `docs/...`, `fix/...`)
and contains no internal Paperclip ticket id or instance-derived details
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [x] All Paperclip CI gates are green
- [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups
- [x] I will address all Greptile and reviewer comments before
requesting merge

---------

Co-authored-by: Paperclip <noreply@paperclip.ing>
2026-11-06 11:49:28 -06:00
DottaandClaude Opus 5.5 a0cba70f18 fix(runner): continue restart-interrupted ACPX and OpenCode turns (#19501)
## Thinking Path

> - Paperclip is the open source app people use to manage AI agents for
work
> - Native runs keep their provider conversation when the control plane
restarts
> - A local Codex turn lost in a restart already continues once in the
same conversation (#15297)
> - ACPX (Claude and the other ACPX profiles) and OpenCode took a
different path: the runner closed the lost turn as a provider failure
> - The task then blocked with "Provider turn failed", and the user's
queued follow-up stayed unread
> - A restart must not need a user action when continuing is safe
> - This pull request gives ACPX and OpenCode the same recoverable
restart-loss cause and the same single continuation as Codex
> - The benefit is that work interrupted by a controller restart
finishes on its own

## Linked Issues or Issue Description

Refs #15297 (Codex continuation), #19399 (restart-interrupted turn
hook), #19471 (harness fix used for the live reruns).

**What happened?**

After a control-plane restart during an active native ACPX Claude turn,
the task ended `blocked` with `native_provider_terminal_failed: Provider
turn failed`. The queued follow-up comment was not consumed. No
continuation started. The next run then failed with
`native_session_cleanup_quarantined`. A native OpenCode run killed
mid-turn ended the same way (`turn.failed` with `error: null`).

**Expected behavior**

When the old provider process is gone and the conversation can be
restored, continue the task once in the same conversation. When that is
not safe, record an honest restart cause instead of a generic provider
failure.

**Steps to reproduce**

1. Start a native ACPX Claude task on a local runner.
2. Submit a follow-up comment while the turn is active.
3. Restart the control plane while the turn is still running.
4. Run `pnpm test:e2e:runner -- --max-automatic-retries 0 --id
everyday-workflows.runner-acpx-claude.local.recover-controller`.

**Root cause**

- `runner-core/src/acpx_provider_backend.rs`
`restore_session_if_needed`: a saved `turn_active` state always closed
the session. It recorded `turn.failed` with only a top-level `code:
acpx_active_turn_recovery_closed` and no `error` object. It also emitted
`run.terminal`.
- The runnerd transport forwards only `error`, so the controller saw
`error: null` and reported generic `provider_turn_failed`.
- `runner-core/src/provider_backend.rs` gave the recoverable
`provider_turn_lost_on_restore` cause only to `provider_label ==
"codex"`. OpenCode shares that backend.
- `nativeRestartInterruptedTurnId` accepted only `codex_app_server`. The
runtime continuation gate accepted only `provider.kind === "codex"`.
- Two follow-on defects appeared once the continuation ran live:
- The restored ACPX provider rejected the controller's result for the
lost turn's open semantic call. That call never settled.
- The restored provider's MCP request ids restart. The controller keys
semantic calls by `hash(runId, callId)`. The continuation's first
Paperclip tool call reused an earlier id, was treated as already
answered, and hung. After the result was accepted,
`runner_settlement_incomplete` failed the run.

## What Changed

- ACPX runner: for an active turn lost to a runner restart, prove that
the original provider lifetime lost its fence quorum. Then restore the
same conversation and record `turn.failed` with `error: { code:
"provider_turn_lost_on_restore", recoverable: true }`. Keep the run open
for the controller's continuation. An accepted result, an unanswered
runtime request, or an active goal keeps the old close behavior. So do
an unproven lifetime fence and a failed restore.
- ACPX runner fallback close: add a structured `error`
(`acpx_active_turn_recovery_closed`, not recoverable, with an honest
restart message), so the cause survives the transport.
- ACPX runner: track open semantic calls durably. On restore, retire the
lost turn's open calls. Acknowledge their controller results as
`retired` and do not send them to the new provider.
- ACPX sidecar: when the sidecar restores an existing session, prefix
forwarded semantic `callId`s with a per-process namespace
(`r<hex>:<id>`). Fresh sessions keep raw ids.
- OpenCode runner: give OpenCode the same recoverable cause and open run
as Codex (`restart_lost_turn_is_continuable`). Cursor Cloud stays
excluded because its agent runs remotely.
- Runner TS: `nativeRestartInterruptedTurnId` accepts `acpx_runtime` and
`opencode_server`. The runtime continuation gate accepts `acpx` and
`opencode`. All other Codex safety rules are unchanged: one
continuation, admitted dead-runner restart only, no compaction, goal,
semantic result, or pending runtime request.
- Docs: `doc/execution-semantics.md` and `doc/run-log-events.md`.

## Verification

Red, then green, at each layer:

- Rust `tests/acpx_warm_attachment.rs`
`restores_the_conversation_after_losing_an_active_turn_to_a_runner_restart`.
Red: status `closed`. Then red on the lost call's result: "tool result
does not match a pending provider call". Green after the fix.
- Rust `tests/native_provider_backend.rs`
`restart_lost_opencode_turn_records_a_recoverable_cause`, with the
qualified OpenCode launch fixture. Red: `error` was `null`. Green after
the fix.
- Rust unit test
`restart_lost_turns_continue_only_for_locally_restored_providers`
(Codex, OpenCode yes; Cursor Cloud no).
- TS `native-session-runtime.test.ts` "continues a restart-lost
acpx_runtime / opencode_server turn once". Red:
`NativeProviderTerminalFailure provider_turn_lost_on_restore`. Green:
exactly one continuation, which does not resend the task.
- TS `acpx-runtime-sidecar.test.ts`: a restored provider's call ids are
namespaced and resolve.
- Server `native-runner-restart-recovery.integration.test.ts`: a
checkpointed `acpx_runtime` or `opencode_server` restart interruption is
claimed as `resume_dead_runner`. Red without the driver gate. Green with
it.
- Two `native_provider_backend.rs` tests asserted the old
close-on-restore result. They now assert the new contract. Their real
invariant still holds: the delivered response is never replayed.

Suites run locally on the final revision:

- runner-core: `cargo test --no-fail-fast acpx`, `--test
native_provider_backend` (38), `--test acpx_warm_attachment`, `--test
codex_provider restart_lost`
- runner TS: `native-session-runtime`, `runnerd-restart-continuation`,
Codex driver recovery, contracts, and `acpx-runtime-sidecar` (all pass)
- server: `native-runner-restart-recovery.integration.test.ts` (80
passed)
- `pnpm --filter "@paperclipai/paperclip-runner..." build` (all
generated-contract checks pass)

Live runner E2E (local, real Claude via ACPX, macOS arm64):

- `everyday-workflows.runner-acpx-claude.local.recover-controller`: PASS
twice in a row on the final runner code. The restart crossed an active
turn. The task finished `done`, the queued follow-up was consumed, the
ZIP download was verified, and there were no failure codes.
- `stock-harness.runner-acpx-claude.local.continuity-restart`
regression: PASS.
- Earlier failing reruns are kept as evidence of the follow-on defects:
one harness `kill EPERM` while stopping the server (unrelated to this
change), one hang on the colliding call id, and one
`runner_settlement_incomplete`.

## Risks

- A continuation can run more work in the restored conversation. Its
prompt requires inspecting state before repeating an uncertain action,
as for Codex.
- The ACPX restore waits up to 5 s for the original provider lifetime
fence before it falls back to the old close.
- The ACPX provider state file gains two fields with defaults. Older
saved states still load. A downgraded runner cannot read state that a
newer runner wrote with these fields.
- Restored ACPX sessions now forward prefixed call ids. Only fresh
sessions keep raw ids. Live proof covers Claude. Codex-ACP, Pi, Cursor,
Copilot, Grok, Kimi, and Antigravity share this path, but this PR proves
them only by unit tests and code review.
- OpenCode is covered by the runner fixture and gate tests. The live
OpenCode restart-chaos cell was not rerun here.
- `runner-core`
`unconfirmed_suspension_state_becomes_recoverable_only_after_cleanup_and_suspend`
is flaky when run in parallel. It also fails with the new path disabled,
so it predates this change.

## Model Used

- Anthropic Claude Opus 5.5 (`claude-opus-5-5`) in Claude Code, with
tool use, code execution, and extended reasoning.

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have searched GitHub for duplicate or related PRs and linked
them above
- [x] I have either (a) linked existing issues with `Fixes: #` / `Closes
#` / `Refs #` OR (b) described the issue in-PR following the relevant
issue template
- [x] I have not referenced internal/instance-local Paperclip issues or
links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip`
URLs)
- [x] My branch name describes the change (e.g. `docs/...`, `fix/...`)
and contains no internal Paperclip ticket id or instance-derived details
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [x] All Paperclip CI gates are green
- [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups
- [x] I will address all Greptile and reviewer comments before
requesting merge

🤖 Generated with [Claude Code](https://claude.com/claude-code)

---------

Co-authored-by: Claude Opus 5.5 <noreply@anthropic.com>
2026-11-06 11:39:29 -06:00
Nicky LeachandClaude Opus 5.5 98ebeefbc9 feat(environments): let managed config declare plugin environments (#19508)
## Thinking Path

> - Paperclip is the open source app people use to manage AI agents for
work
> - A managed instance gets its instance-level environments from the
`PAPERCLIP_MANAGED_CONFIG` document
> - #19490 added the plugin environment rows, their marker index and
write floor, but nothing creates them yet
> - The managed config still accepts only one sandbox entry, so a
managed instance cannot get a plugin-provided environment without manual
setup
> - This pull request lets the managed config declare plugin entries
beside the sandbox entry, and provisions one locked row for each at boot
> - The benefit is that a managed instance gets its plugin environments
with no manual setup, and the rows recover by themselves when their
plugin restarts

## Linked Issues or Issue Description

Refs #19490 (the plugin environment rows this pull request provisions)

**Subsystem affected**
Server environments: the managed-config parser, the managed environment
bootstrap, and the environment routes' write floor.

**Problem or motivation**
A managed instance cannot get a plugin environment from its managed
config. The `environments` section accepts one entry, and that entry
always provisions the managed sandbox. Company settings cannot create a
plugin environment either. So each managed instance that needs one
requires manual setup.

**Proposed solution**
Let an `environments` entry declare `driver: "plugin"`. Boot provisions
one locked row for each plugin entry through the row layer from #19490.
A later pull request adds a one-time instance default for one plugin
entry, and advertises the new managed-config capability.

**Alternatives considered**
Manual setup on each instance, and a new control-plane endpoint. Both
need a step outside the deploy. The managed config already delivers the
sandbox entry.

**Roadmap alignment**
This extends the existing managed-config `environments` section, which
already provisions the managed sandbox. It adds no new product surface.

## What Changed

- `server/src/services/managed-config.ts`: an `environments` entry may
set `driver` to `"sandbox"` or `"plugin"`. An entry without `driver` is
still the sandbox entry, so today's documents parse unchanged.
- A plugin entry has `name`, optional `description`, `pluginKey` (the
plugin's manifest id), `driverKey` and optional `driverConfig`.
- At most one sandbox entry. Names are unique across the section, and
`pluginKey`–`driverKey` pairs are unique. Secret-like keys in
`driverConfig` refuse startup, as for sandbox `config`. An unknown key
or driver still refuses startup, and that includes `instanceDefault`
until the follow-up pull request.
- Plugin entries parse into a new `pluginEnvironments` list. The
`environments` list keeps only the sandbox entry, so its consumers do
not change.
  - `MANAGED_ENVIRONMENT_DRIVERS` lists the accepted drivers.
- `server/src/services/managed-environments.ts`
(`applyManagedEnvironments`):
- Boot refuses to start unless an auto-installed catalog entry installs
each plugin entry's `pluginKey`. `plugins.autoInstall` holds catalog
keys, not manifest ids, so the parser cannot check this. Boot uses the
manifest ids `createApp` already resolves from the bundled and
distribution catalogs (`app.locals.managedBundledPluginKeys`, passed in
by `server/src/index.ts`). Without that list it resolves the catalog
itself.
- Plugin entries run after the sandbox entry and reuse its readiness
handling. Boot awaits `pluginsReady`, then requires the plugin `ready`,
declaring the entry's driver, and running a worker. Otherwise boot
archives the row and re-ensures it on the worker's `ready`.
- Recovery re-ensures on every worker `ready` until one ensure succeeds
or the plugin rejects the config (HTTP 422).
- If the ensure fails because the worker died, boot archives the row and
waits for `ready`. If the worker is still running (for example the call
timed out), boot keeps the row as it is, retries once at once and on the
next `ready`, and otherwise at the next boot. No timer is added.
  - Removing an entry never archives its row.
- A plugin-only document does not conflict with
`PAPERCLIP_EXECUTION_MODE`, because plugin rows do not use the sandbox
slot.
- Plugin entries never change the instance default. The sandbox stamp
still fills only an unset or local default, so it never replaces a
plugin default.
- `server/src/routes/environments.ts`: `isPlatformSlotEnvironment`
treats a marked plugin row as a live slot while the document declares
its entry. So the marker-clear escape hatch is refused then, and allowed
again after the entry leaves the document.
- `doc/DEVELOPING.md`: new "Managed environments" section.

## Verification

- `cd server && npx vitest run src/__tests__/managed-config.test.ts`:
old documents parse unchanged. Sandbox plus plugin parses. Each of these
refuses startup: two sandbox entries, `driver: null`, duplicate names, a
duplicate pair, a secret-like key, an unknown key (including
`instanceDefault`), an unknown driver, a malformed `driverKey` or
`driverConfig`.
- `npx vitest run
src/services/managed-environments-plugin-entries.test.ts` (the
sandbox-entry tests stay in `managed-environments.test.ts`; shared
fixtures are in `managed-environments.test-support.ts`):
- A plugin entry is ensured with the validator's worker manager, after
the sandbox entry.
- Boot refuses a plugin entry whose `pluginKey` no auto-installed
catalog entry installs, both from the passed list and from its own
catalog lookup.
- A plugin that is down archives the row, and worker recovery re-ensures
it. A missing plugin, a plugin without the driver, or a worker manager
without `call` counts as unavailable.
- Recovery stays armed after a failed attempt and stops after one
success or a permanent config rejection (422). A `ready` during an
attempt queues one more.
- A worker that dies during the boot ensure archives the row and arms
recovery. A failure while the worker keeps running leaves the row as it
is and retries.
- Removing an entry does not archive. Plugin entries and the sandbox
stamp never change a plugin default.
  - An ensure failure is counted, not thrown.
- `npx vitest run src/__tests__/managed-plugin-environments.test.ts`
(embedded Postgres, real `applyManagedEnvironments`): the first boot
creates the row and the second changes nothing. A plugin that is down
archives the row, and recovery brings it back. Removing the entry does
not archive the row. The instance default stays unset. The row tests
from #19490 still pass.
- `npx vitest run src/__tests__/environment-routes.test.ts`: the marker
clear is refused while the document declares the entry, and allowed
after it leaves.
- `npx vitest run src/__tests__/instance-settings-service.test.ts
src/__tests__/instance-settings-cloud-defaults.test.ts`: pass with the
new `pluginEnvironments` field.
- `pnpm --filter @paperclipai/server typecheck` passes.
- I did not run the full `pnpm test:run`, `pnpm -r typecheck` or `pnpm
build`. CI covers them.

## Risks

- No schema change.
- A managed-config document with a plugin entry now provisions a row at
boot. A document without one behaves as before.
- Adoption renames an unmarked row for the same plugin and driver to the
declared name and resets its driver config to the declared one. The row
keeps its id, agents and other metadata, and it is then locked like the
managed sandbox.
- Boot now refuses to start when a plugin entry names a plugin that no
auto-installed catalog entry provides. This is the same fail-closed
posture as an unknown sandbox provider.

> For core feature work, check [`ROADMAP.md`](ROADMAP.md) first and
discuss it in `#dev` before opening the PR. Feature PRs that overlap
with planned core work may need to be redirected — check the roadmap
first. See `CONTRIBUTING.md`.

## Model Used

- Claude Opus 5.5 (`claude-opus-5-5`), Anthropic, through Claude Code
with tool use (file edits, shell, test runs).

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have searched GitHub for duplicate or related PRs and linked
them above
- [x] I have either (a) linked existing issues with `Fixes: #` / `Closes
#` / `Refs #` OR (b) described the issue in-PR following the relevant
issue template
- [x] I have not referenced internal/instance-local Paperclip issues or
links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip`
URLs)
- [x] My branch name describes the change (e.g. `docs/...`, `fix/...`)
and contains no internal Paperclip ticket id or instance-derived details
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [ ] All Paperclip CI gates are green
- [ ] Greptile is 5/5 with no open P2s, recommendations, or follow-ups
- [x] I will address all Greptile and reviewer comments before
requesting merge

🤖 Generated with [Claude Code](https://claude.com/claude-code)

---------

Co-authored-by: Claude Opus 5.5 <noreply@anthropic.com>
2026-11-06 17:35:13 +00:00
DottaandPaperclip 0d03610d2f fix(opencode): export bounded tool argument diagnostics (#18699)
## Thinking Path

> - Paperclip manages work across agent runtimes.
> - Company observability sends allowed records to the operator's OTLP
receiver.
> - Native OpenCode exports tool results but omits submitted argument
diagnostics.
> - Exact argument values are excluded by the current capture policy.
> - Safe type information can distinguish malformed envelopes without
copying private values.
> - This change exports a fixed diagnostic shape from authenticated
dispatch and schema-rejection events.
> - Operators can compare rejected and accepted calls under the existing
capture controls.

## Linked Issues or Issue Description

**What happened?**

OpenCode tool spans omit argument diagnostics. The exporter reads native
tool events. The authenticated MCP boundary has the submitted arguments,
but its dispatch item events do not create tool spans. Calls rejected by
its schema check do not emit dispatch items.

**Expected behavior**

With tool details and tool content enabled, Paperclip tool spans include
the method, diagnostic schema version and allowed argument field types.
Exact values and arbitrary field names stay excluded.

**Steps to reproduce**

1. Configure a company OTLP receiver and enable native OpenCode export.
2. Enable tool details and tool content.
3. Submit a rejected Paperclip tool call and then a valid call.
4. Inspect the input diagnostics and outcome of each span.

Related work: #17989 proposes metadata-only native export. #18098 added
the normalized content exporter. This change repairs argument
diagnostics in that exporter.

## What Changed

- Export `paperclip.opencode.tool-diagnostics.v1` as `braintrust.input`
for authenticated Paperclip tool calls.
- Include `tools/call`, the argument type and types for a fixed list of
envelope fields.
- Use dispatch IDs for Paperclip tool spans. Keep separately named
`opencode tool ...` provider records for failures before dispatch. Mark
each span source.
- Preserve schema-rejected calls as failed items without invoking the
controller handler. Keep authentication and the closed tool catalog.
- Bound schema-rejection error text in stored events and transcripts
with the existing redaction and 8 KiB limit. Keep the provider response
unchanged.
- Preserve the controller opt-in, tool-detail and tool-content switches,
redaction, limits and run identity.
- Add MCP-to-receiver regression coverage and update the capture policy
and capability maps.

### Hypothesis and thesis for a fix

The exporter drops the dispatch diagnostic signal. Raw input omission is
intentional. The repair belongs in the OpenCode driver and exporter.
Shared protocol, tool permissions and task completion stay unchanged.

The regression sends schema-rejected, handler-rejected and valid
argument envelopes through a fixture OpenCode subprocess and the
authenticated MCP bridge. It checks the downstream rejection and
receipt, completion event and actual local OTLP request. The baseline
has no dispatch spans. The candidate has separate spans with safe type
diagnostics. Two warm runs and disabled capture use the same path.

Source: [OpenCode diagnostic
pattern](https://www.braintrust.dev/app/Paperclip/p/Paperclip%20Staging/patterns/f172172e-9c65-453f-bb3a-7c6ba4f5a400).

## Verification

- Baseline: `a92f616cd0a457c8ba85d994b24e1f92c2e4d1de`. The new
integration regression fails because tool spans are absent. The same
regression passes with this change.
- Exporter and MCP bridge suites: 37 tests pass. Three final driver
controls pass. Ten selected controls also passed before the final
provider-record repair. Runner TypeScript typecheck and build pass after
the review repair.
- The review regression failed with two spans before the repair. It
passes with three spans after the repair. Unauthenticated and unassigned
calls do not reach the rejection observer. A broken observer cannot
change the schema rejection.
- The full OpenCode/exporter/MCP run passes 94 tests and fails one
existing final-answer selection test. The same failure occurs in an
untouched baseline checkout. It is not claimed as a pass.
- A further filtered run reached the default five-second timeout in two
existing continuation tests during concurrent repository checks. All
five selected dispatch, warm-session and continuation controls pass with
a 15-second test deadline. The earlier timeouts remain recorded.
- `node scripts/check-maps.mjs` and `git diff --check` pass.
- Runner TypeScript checks and build pass. Full repository typecheck and
build stop at Rust because `cargo` is not installed. The full repository
test command was stopped before workspace handoff. No full-suite pass is
claimed. Local source commits:
`c48a8af1c186e415c802fa0ac95209b16b4a3122` `6744991f6`, and `a8ccf4693`.
The remote branch is based on newer master
`4814d1ab691c176170510a93a175dafdc9e021c7`. All initial eight changed
files match between those bases before the patch.
- The integration provider and controller are fixtures. The OTLP
receiver is a real local HTTP server. A separate real OpenCode 1.18.34
probe opened a session. The remote free model returned `Free usage limit
reached`. No tool call or receipt was produced. No live recovery is
claimed.

- Review follow-up: a real MCP request with 12,000 invalid array
elements produced a 264,908-character event error before the repair. The
same regression now stores 8,192 characters in both events and
transcript. The MCP error receipt stays unchanged and no handler runs.
All 37 exporter/MCP tests and 12 selected driver/exporter/MCP controls
pass. Runner TypeScript checks and build pass. Local follow-up commit:
`64d4fa583`.
- The previous remote head passed Runner, typecheck, build and E2E. Its
unchanged attention-retention shard failed twice with 15-second
timeouts, then cleanup deadlock and duplicate fixture IDs. Both affected
retention suites passed all 70 tests locally unchanged. The new head
needs fresh CI and review; no full CI pass is claimed.

- Current-master qualification (2026-11-06, merge `2959ecdb8d`):
normally merge master `53645a0104`, including the existing test-only
retention-fixture repair from #18774 reused by #18770. Keep the OpenCode
diagnostics feature and upstream durable MCP and completion-feedback
behavior. No test deadline or assertion changed. The three old CI
timeouts did not reproduce locally: the four completed-blocker-history
cases passed on the old head in 29.52 seconds, then passed on the merged
head in 13.23 seconds. The fixture rollback/provenance regression also
passed. All 116 exporter, MCP bridge and OpenCode driver fixture tests
passed. Runner TypeScript checks and both TypeScript compilation targets
passed; ACPX profiles match the release manifest and protocol-contract
checks pass. These checks use local PostgreSQL, HTTP and process
fixtures. No hosted provider call or deployed recovery is claimed. Fresh
CI and review are pending for this merge.

- Map-scope review follow-up (`61e662e179`): remove only the inherited
diagnostics paragraphs from the company capability maps. This change
adds logging detail within an existing capability. `node
scripts/check-maps.mjs` and `git diff --check` pass. Production and test
inputs are unchanged from the qualified merge; fresh CI and review are
pending for the final head.

- Test compiler follow-up (`6675b46377`): reproduce CI TS2722 with `tsc
-p packages/paperclip-runner/tsconfig.test.json --noEmit`. The harness
contract makes transcript retrieval optional. The OpenCode bounds
regression now fails explicitly if that capability is absent, then
inspects the narrowed method. The same complete Runner test compiler
project passes, and the actual local schema-rejection fixture passes
with all receipt and 8 KiB assertions retained. Production inputs are
unchanged. Fresh final-head CI and review are pending.

- Final-head qualification: `6675b4637743aa269e5214756b158e1e0a4561a5`
passes all 56 applicable CI checks (three skipped, one neutral review).
[CI
result](https://github.com/paperclipai/paperclip/actions/runs/42253119577).
Greptile gives 5/5 with no open findings. Hosted task recovery remains
pending verified rollout.

## Risks

- Authenticated spans use dispatch IDs. Provider records use separate
names and a source attribute. Consumers must choose the source they need
to avoid counting two observations of the same tool action.
- Safe types cannot reconstruct nested arguments or explain every
value-level validation failure.
- Export remains best effort and bounded. Lost native frames no longer
remove dispatch diagnostics, but abrupt process termination can still
lose a turn.
- Full local Rust checks and a deployed product journey are not yet
verified. The pull request is unmerged and not deployed.

## Model Used

OpenAI GPT-6 through Codex, with reasoning, tool use and code execution.
The exact runtime variant and context-window size are not exposed to
this session.

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have searched GitHub for duplicate or related PRs and linked
them above
- [x] I have either (a) linked existing issues with `Fixes: #` / `Closes
#` / `Refs #` OR (b) described the issue in-PR following the relevant
issue template
- [x] I have not referenced internal/instance-local Paperclip issues or
links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip`
URLs)
- [x] My branch name describes the change (e.g. `docs/...`, `fix/...`)
and contains no internal Paperclip ticket id or instance-derived details
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [x] All Paperclip CI gates are green
- [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups
- [x] I will address all Greptile and reviewer comments before
requesting merge

---------

Co-authored-by: Paperclip <noreply@paperclip.ing>
2026-11-06 11:01:25 -06:00
DottaandPaperclip c6573962f8 fix(workspaces): recover full sandboxes through read-only export (#19465)
## Thinking Path

> - Paperclip preserves agent work across failed runs and server
restarts.
> - A remote workspace must have a durable save before its source can be
released.
> - Portable capture normally writes a Git mirror and a full archive
inside the sandbox.
> - A full sandbox can prevent capture before the provider's streaming
download starts.
> - Retrying that write cannot create the required free space.
> - This change transfers a checked standalone source and seals its
archive on the controller.
> - The source remains retained unless the existing durable save
completes.

## Linked Issues or Issue Description

Related: #18644 reduced temporary capture space. #18172 added the
provider's disk-free directory transfer. This repair connects portable
capture to that transfer when the archive itself cannot be created.

**What happened?**

Workspace capture returns `remote_workspace_sandbox_disk_full` after
provider work has finished. File recovery repeats the same sandbox
write.

**Expected behavior**

Recover a stable standalone workspace without requiring another full
archive on the source disk. Preserve staged changes, untracked work,
confined links and the original source.

**Steps to reproduce**

1. Create a standalone Git repository with a commit, staged changes and
an untracked result.
2. Use the existing real-command transport fixture. Inject ENOSPC into
the sandbox helper write or archive write.
3. Run portable capture. Before this change it rejects the helper
failure.
4. With the change, restore the saved archive after removing the fixture
source. Check the commit, staged content, untracked result and Git
connectivity.

## What Changed

- Attempt one controller-side capture after an exact sandbox disk-full
failure.
- Read a source inventory without installing a helper. Use the existing
provider bulk transfer with confined links and runtime exclusions.
- Compare the transferred inventory with source fingerprints before and
after sealing.
- Reject copied Git pointers, alternates and administrative symlinks.
Parse config as data without includes; allow only portable keys before
controller Git normalization.
- Preserve socket exclusions. Retain the source and remove incomplete
controller staging after failure.
- Update execution semantics and focused regression coverage. No
database migration or new execution authority.

## Verification

- TDD red on base `2f35eb1080`: the new full-sandbox test failed with
`remote_workspace_sandbox_disk_full` before production edits.
- Green: 202 transport and archive tests passed before the additional
Git configuration guards. At head `8541086cb5`, all 116 transport tests
and the PostgreSQL durability acceptance pass. The final `e24e173ec9`
exclusion guard passes those 116 cases plus its new Git-history
regression across the full run and focused rerun. Environment: macOS
arm64, Node 26.4.0; real Node/Git commands and filesystem transfer.
- Review regressions were also red before their fixes: an internal Git
config symlink bypassed the check, and `core.attributesFile` could
select a controller path. Git administrative symlinks and nonportable
config now fail before normalization. The focused safety selection
passes 11 cases.
- Cases cover helper and archive ENOSPC, commit/staged/untracked
continuity after source removal, confined links, sockets, changed
source, corrupt or extra copied files, unsafe Git metadata, retained
diagnostic text and failed download.
- Real PostgreSQL acceptance passes: normal workspace save recovers one
sandbox ENOSPC, commits the encrypted snapshot, clears its writer, loses
the original allocation, then independently reloads the saved result
twice. The first acceptance attempt used an incorrect expected status
(`available`); the documented state is `committed`. No production change
was needed for that correction.
- Review regressions for untracked Python/Node environments and
excessive Git roots failed before their fixes. Dependency exclusions now
match normal capture. Controller parsing starts only after
whole-tree/repository budgets and layout checks; refspec/settings
budgets and a shared two-minute verification/normalization deadline
bound further work. The excessive-root test verifies zero Git
subprocesses.
- Real provider-boundary red/green: Daytona direct tar and
capacity-fallback PTY transfers first dropped `._result.txt`. The new
optional mapping contract preserves all user names and excludes only
current transfer scratch. Kubernetes implements the same contract.
Explicit caller exclusions and archive validation remain in force.
- Standalone Linux qualification on Node 24.22.2/Debian bookworm: fresh
shared/SDK build; Daytona and Kubernetes typecheck and build; Daytona
file-sync/capacity/diagnostics 68/68 pass; Kubernetes file-sync 31/31
pass, including the actual `/proc` case. Qualification was refreshed
again on the final `be6f7feacc` source tree: current shared/SDK rebuilt;
all 815 staged source/config/manifest hashes match the delivered tree
before and after testing. An initial container run as root bypassed a
read-only file test; the same source passes as uid 1000. Installing zstd
enabled eight initially skipped cases.
- A further review regression proved `.git/pyvenv.cfg` could exclude Git
history as a dependency. The inventory now handles `.git` before
dependency filtering, matching normal capture. The full capture/restore
test verifies the original commit and saved work. The first green
attempt incorrectly compared command-result object identity; correcting
the test to compare stdout passed with no production change.
- Further red/green regressions cover read-only private-copy cleanup, a
regular file replaced by a FIFO before open, case aliases of Git
administrative metadata, and permission preservation under restrictive
umask. Nonblocking no-follow file handles verify identity before and
after reading. Cleanup changes only private controller directories.
Provider extraction preserves ordinary permissions, refuses special mode
bits before writing, and does not adopt source ownership, ACLs,
attributes or flags. Final macOS Daytona tests pass 65/65; the final
Linux qualification above was repeated on these exact provider sources.
- Focused strict TypeScript compilation of the inventory and archive
modules passes.
- The first sandboxed archive run failed three Unix socket fixtures with
EPERM. The permitted run outside that filesystem sandbox passed all
tests.
- Initial full local server typecheck could not resolve the unbuilt
Runner package and produced cascading errors. Exact-head `e24e173ec9` CI
typecheck, build, Runner and browser checks pass. That CI attempt failed
two server shards: the unchanged retained-cleanup backlog test timed out
at 15 seconds and passes locally unchanged; ten cache-reclaim fixture
oracles failed because directory fallback consumed their sealed-archive
counters/faults. Final commit `caed4e4f83` isolates the intended
unavailable-directory boundary while preserving archive counts, recovery
status, integrity and no-second-reclamation assertions. Those ten
failures reproduced locally before the fixture edit. The full affected
file passes 394/395; its sole other HTTP socket-hang-up case passes
unchanged in an isolated rerun. This is combined coverage of all 395
cases, not a single complete green run. The final branch integrates
master `53645a0104` at `98ea07225592930cbb0d18bcf250bc64f6bb13b4`,
preserving upstream workspace phase timings. After integration: 117
transport cases, the PostgreSQL durability acceptance, the existing
object-storage/timing regression, and 12 affected cache cases pass. The
expanded recovery file now has 421 cases. Final-head
`be6f7feacc45c1e32a26a2417e973f1e3752fd8d` CI passes all 55 applicable
checks (three skipped, one neutral review), including the expanded
recovery suite, typecheck, builds and Runner coverage. [CI
result](https://github.com/paperclipai/paperclip/actions/runs/42251345554).
- Provider exclusion regressions were red through four real Linux
transfer paths: Daytona direct archive, direct safe-link repair,
capacity PTY repair, and Kubernetes streaming. A root socket and nested
regular file share a basename; literal glob-character files/subtrees
also survive. Preserve mode now anchors tar exclusions as literal
root-relative paths and escapes `find -path` pruning. Default callers
keep glob semantics. Receipt-count regressions were also red before
correcting preserved-output counting. All 31 Kubernetes and 68 Daytona
tests, builds and typechecks pass on the final source with 815 matching
inputs.
- The final semantics documentation explicitly records special mode
bits, the stricter config allowlist (including innocuous unlisted keys),
and provider qualification limited to Daytona/Kubernetes; these address
the optional current-head review observations without broadening
controller Git authority.
- No Daytona credential is available in this session. Provider transfer
is a local filesystem boundary in these tests. Hosted task recovery and
rollout remain unverified.

## Risks

- Recovery reads the source repeatedly and transfers the standalone
tree. It can take longer than normal capture.
- Linked worktrees, initialized submodules, Git administrative symlinks,
nonportable Git configuration, special mode bits and alternate object
stores remain retained if the normal capture cannot finish. This
fallback does not follow their pointers onto the controller.
- A provider without usable directory export, a changed source, or
insufficient controller space cannot produce a receipt. The original
source stays retained.
- The server, SDK and affected provider plugins must be built from this
revision together. An older provider can fail inventory verification on
names it omits; it cannot publish an incomplete save. No merge,
publication or deployment is included.

## Model Used

OpenAI GPT-6 family through Codex, with reasoning, code editing, shell
tools and automated tests. The exact serving model ID and context window
are not exposed in this session.

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have searched GitHub for duplicate or related PRs and linked
them above
- [x] I have either (a) linked existing issues with `Fixes: #` / `Closes
#` / `Refs #` OR (b) described the issue in-PR following the relevant
issue template
- [x] I have not referenced internal/instance-local Paperclip issues or
links (only public GitHub references)
- [x] My branch name describes the change and contains no internal
Paperclip ticket id or instance-derived details
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [x] All Paperclip CI gates are green
- [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups
- [x] I will address all Greptile and reviewer comments before
requesting merge

---------

Co-authored-by: Paperclip <noreply@paperclip.ing>
2026-11-06 11:00:32 -06:00
DottaandClaude Opus 5.5 871a9b3180 test(restart-chaos): add Phase 1 control-plane restart chaos harness (#19477)
## Thinking Path

> - Paperclip is the open source app people use to manage AI agents for
work
> - The control plane owns task execution, recovery and Retry for every
agent run
> - Server restarts were the largest remaining source of stalled tasks
in the staging soak campaign
> - The soak could only observe restarts that staging happened to
perform, so a failure could not be repeated
> - This pull request adds a script harness that causes the restarts on
purpose and grades each task on fixed rules
> - The benefit is a repeatable restart failure with a replay command
and an evidence bundle for each fixer

## Linked Issues or Issue Description

**What existing behavior does this improve?**
The restart test coverage. Today the runner-e2e restart cells test one
fixed restart point per cell. They cannot run many tasks at once, cannot
choose a random fault time, and cannot replay a failure.

**Subsystem affected**
Test tooling (`tests/restart-chaos/`). It reuses the runner-e2e process
code in `tests/runner-e2e/`. Product code does not change.

**Current behavior**
Restart robustness is checked through a small set of fixed cells. A
random restart during a real task has no defined pass rule.

**Proposed behavior**
A harness starts an isolated control plane and seeds a "Chaos Lab"
company. It launches seeded workloads, injects K1, K2 or K4 faults at
seeded times, and grades each task on rules R1 to R6 plus a
deterministic task oracle. `--replay <wave>/<task>` repeats one task.

**Reason and benefit**
Fixers get a replay command and an evidence bundle for each failure
signature. The first smoke wave already found three product signatures
(dead Retry after a restart, a false over-budget stop after restarts,
and an OpenCode turn killed mid-turn that ends as a provider failure).

**Breaking changes**
None. The change adds new test files, one entry in the test-project
typecheck list and a gitignore entry.

## What Changed

- Add `tests/restart-chaos/`:
- `supervisor.ts` owns one isolated server. It reuses
`replaceController`, the process-tree stopper, the environment isolation
helpers, the config seed, the port reservation, the wrapper-owned
Postgres and `server-entry.ts` from `tests/runner-e2e/`. It does not
copy them. Faults: K1 (SIGKILL, immediate restart), K2 (SIGTERM,
restart) and K4 (SIGKILL, 2 to 5 minute hold). Postgres and the
controller runtime cache stay across a fault.
- `seed.ts` creates the company, encrypted provider secrets, native
Codex, ACPX Claude and OpenCode agents from the runner-e2e catalog, and
the `chaos-sandbox` project. The project is a git repository with a
Python CLI, one failing test and a four-minute `bench.sh`.
- `scheduler.ts` makes a seeded plan of workload, adapter, fault, fire
time, hold and nonce for each task. It saves the plan so that `--replay`
can run one task again.
- `observer.ts` polls each issue and its runs. When a task stops and
offers Retry, it sends `POST /api/issues/:id/retry` one time, with the
same body as `useTaskRetry.ts`.
- `grader.ts` grades R1 to R6 as pure functions. `workloads.ts` defines
workloads A1, B1, B5 and C1 and their oracles.
- `evidence.ts` and `ledger.ts` write an evidence bundle for each
failure, a JSONL ledger and `SUMMARY.md`. All results go to the
gitignored `tests/restart-chaos/results/`. Known provider key values are
redacted.
- Unit tests: `scheduler.test.ts` (determinism, replay and CLI parsing)
and `grader.test.ts` (R1 to R6 and the oracles on fixture timelines).
These tests need no credentials.
- Add `tests/restart-chaos` to the test-project typecheck list
(`scripts/typecheck-test-projects.mjs`), with a `tsconfig.layers.json`
like `tests/runner-e2e`. The harness runs through direct script
invocations, not `package.json` scripts.
- After the first Greptile review:
- A failed fault or an unexpected server exit now gets one bounded
recovery. If the recovery fails, the wave fails and does not hang.
- Incomplete cleanup is now a harness error, and the harness keeps the
instance.
- After the C1 follow-up comment, the observer needs a fresh rest window
before it grades the task.
- `--replay` now fires the recorded faults that crossed the task, at the
same offsets, including the faults that other tasks requested.
- A failed workspace-operation read is now a sweep error. It cannot give
a clean rest.
- R2 now checks that workspace files from before the first fault still
exist at rest.
- B5 now needs the completion record that `bench.sh` writes for each
task.
- After the second round of reviews:
- An idle `todo` or `in_progress` task with no live run and no named
wait is no longer treated as resting. The observer keeps watching it
until the task resumes or passes the R5 stall limit.
  - A failed injected fault now fails the wave with exit 2.
- T-oracle commands run agent-editable code. They now run under a macOS
Seatbelt sandbox with a scratch `HOME` and no network, and they cannot
read the operator's home directory. On other platforms these commands
are refused unless the operator explicitly allows them.
- R4 now counts every active run. A wake comment may be served again
only after a run that did not succeed.
- Evidence redaction now covers every environment variable name that
ends in `KEY`, `TOKEN`, `SECRET` or `PASSWORD`.
- If the pre-fault snapshot fails, only R2 for that task is left
unchecked. The wave continues.
- B5 also needs bench progress that the harness observed while it
polled.
- Add `doc/plans/2026-11-06-control-plane-restart-chaos.md` and its
campaign ledger.

## Verification

- `pnpm exec vitest run --config tests/restart-chaos/vitest.config.ts`:
38 tests pass. The tests include observer tests with a fake API, a real
`bench.sh` run, and a sandbox test that cannot read a canary secret.
- `node scripts/typecheck-test-projects.mjs tests/restart-chaos`:
passes.
- `server/scripts/typecheck-layers.test.mjs`: 45 tests pass, including
"covers every project under tests/".
- A supervisor check with no credentials passed. K1 was ready again in
about 6 seconds. K2 with a 3-second hold was ready again in about 9
seconds. Company data stayed readable.
- One paid smoke wave ran: `--env local --adapters codex,claude,opencode
--workloads A1,B1,C1 --faults K1 --tasks 3 --concurrency 2 --seed 7`.
The harness worked from start to end, and all three tasks crossed a
restart. The 0/3 result comes from product failures, which the campaign
ledger records. A scan found no provider key in the results.
- To run a wave:

  ```sh
  pnpm --filter @paperclipai/paperclip-runner build:runner-binaries
  set -a; source ~/.secrets; set +a
node cli/node_modules/tsx/dist/cli.mjs tests/restart-chaos/main.ts --env
local --adapters codex,claude,opencode --concurrency 4 --tasks 8
--faults K1,K2,K4 --seed 42
node cli/node_modules/tsx/dist/cli.mjs tests/restart-chaos/main.ts
--replay <wave>/<task>
  ```

## Risks

- Low product risk. The change adds test tooling only and does not
change product code.
- A wave spends provider money. The company budget hard cap
(`--budget-cents`, default 3000) is the only spend limit. The plan's
per-wave and per-night refusal is not implemented yet.
- Known gaps:
- `--env daytona` is reserved. It fails with a TODO in `seed.ts`. The
Daytona sandbox sweep for R6 is not implemented yet.
- The project requests isolated git-worktree workspaces. A B1 task still
ran in the shared fixture repository. Concurrent B1 and B5 tasks can
share files. The oracles use marker files for each task.
- Only K1, K2 and K4 at seeded random times are available. Boundary
triggers (B1 to B16), other faults and the UI probe come in Phase 2.
  - The paid smoke did not exercise B5 or K4.
- On macOS, B1 oracle commands need `python3` outside the operator's
home directory, for example `/usr/bin` or Homebrew. On Linux they are
refused until a sandbox is added.
- The B5 proof is best-effort against a deliberately adversarial agent,
because that agent can write to the workspace.
- Startup phase timings come from polling `/api/ready`. The server
records its own timings only as OpenTelemetry spans.
- `pnpm verify` and the CI Vitest jobs do not select these unit tests.
The root Vitest projects cover workspace packages only. CI typechecks
the files, but the tests run only through the vitest command above.
- After the smoke, rest detection and the review fixes changed. A
recovery action that the board owns now counts as a rest, and R6 reports
it. A paid wave did not run again after these changes.

> For core feature work, check [`ROADMAP.md`](ROADMAP.md) first and
discuss it in `#dev` before opening the PR. Feature PRs that overlap
with planned core work may need to be redirected — check the roadmap
first. See `CONTRIBUTING.md`.

## Model Used

- Claude Opus 5.5 (Anthropic), model ID `claude-opus-5-5`, used in
Claude Code as an agent with tool use (shell, file edits) and extended
thinking.

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have searched GitHub for duplicate or related PRs and linked
them above
- [x] I have either (a) linked existing issues with `Fixes: #` / `Closes
#` / `Refs #` OR (b) described the issue in-PR following the relevant
issue template
- [x] I have not referenced internal/instance-local Paperclip issues or
links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip`
URLs)
- [x] My branch name describes the change (e.g. `docs/...`, `fix/...`)
and contains no internal Paperclip ticket id or instance-derived details
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [x] All Paperclip CI gates are green
- [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups
- [x] I will address all Greptile and reviewer comments before
requesting merge

🤖 Generated with [Claude Code](https://claude.com/claude-code)

---------

Co-authored-by: Claude Opus 5.5 <noreply@anthropic.com>
2026-11-06 10:45:52 -06:00
Nicky LeachandClaude Opus 5.5 e1332b997f fix(plugins): align tool run context and interaction input types (#19493)
## Thinking Path

> - Paperclip is the open source app people use to manage AI agents for
work
> - Plugins add tools and issue-thread interactions through
`@paperclipai/plugin-sdk`
> - The SDK types are the public contract between the host and plugin
authors
> - Two parts of that contract do not match what the host does at
runtime
> - First, `ToolRunContext.projectId` says it is always a project UUID.
The tool gateway sends an empty string when a run has no project. The
direct tool route rejects such runs with 400
> - Second, three interaction helpers ask for the parsed output type, so
plugin authors must pass fields that the host fills in with defaults
> - This pull request makes the types and both tool paths agree with the
runtime
> - The benefit is that agents with no project can run plugin tools, and
plugin authors can omit the fields that have defaults

## Linked Issues or Issue Description

Fixes #3273

Related: #3274 removes the `projectId` requirement from the route. That
change alone is not enough today: the route now also looks up the
project to check its company, and that lookup needs a value. This pull
request also skips that lookup when the run has no project. It gives
plugins one value for "no project" on both tool paths.

The new test typecheck in #18739 and #18839 also listed both problems as
possible product problems.

## What Changed

- `server/src/routes/plugins.ts`: `POST /api/plugins/tools/execute`
accepts a `runContext.projectId` that is missing, `null`, or an empty
string. It passes an empty string to the plugin, the same value that the
tool gateway sends. It checks the project's company only when a project
ID is present. A `projectId` that is not a string returns 400.
- `server/src/routes/openapi.ts`: the request schema marks
`runContext.projectId` as optional and nullable.
- `packages/plugins/sdk/src/types.ts`:
- The `ToolRunContext.projectId` comment says the value is an empty
string when the run has no project.
- `suggestTasks`, `requestConfirmation` and
`requestCheckboxConfirmation` take `CreateIssueThreadInteractionInput`,
as `askUserQuestions` already does. The host parses this input with the
schema, so the defaults apply.
- `packages/plugins/examples/plugin-kitchen-sink-example/src/worker.ts`:
the example passes `undefined` instead of an empty project ID to
`issues.create`.
- `doc/plugins/PLUGIN_SPEC.md` (section 13.10): documents the empty
project ID.
- Tests:
- `server/src/__tests__/plugin-routes-authz.test.ts`: tests a run with
an empty, missing, or `null` project ID, which skips the project lookup.
Also tests that a project ID that is not a string returns 400.
- `packages/plugins/sdk/tests/testing-actions.test.ts`: removes the cast
that the output type required.

## Verification

- `pnpm exec vitest run server/src/__tests__/plugin-routes-authz.test.ts
server/src/__tests__/openapi-routes.test.ts
packages/plugins/sdk/tests/testing-actions.test.ts`: 3 files, 81 tests
pass.
- `cd server && pnpm typecheck`: passes. This includes the source layers
and the three test-tree shards.
- `tsc --noEmit` passes for `packages/plugins/sdk` (`tsconfig.json` and
`tsconfig.test.json`) and for the kitchen-sink example.
- Not run locally: the full `pnpm test:run` and the root `pnpm build`.
Required CI covers them.

## Risks

- Low risk. The direct tool route now accepts calls that it rejected
before. It still checks that the agent and the run belong to the
company. With no project ID, there is no project to check.
- A plugin that reads `runCtx.projectId` can get an empty string on both
tool paths. The tool gateway already sent this value before this change.
Only the documentation is new.
- The SDK parameter types are wider. Existing plugin code still
compiles.

## Model Used

- Claude Opus 5.5 (`claude-opus-5-5`) in Claude Code, with tool use
(shell, file edits) and extended thinking.

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have searched GitHub for duplicate or related PRs and linked
them above
- [x] I have either (a) linked existing issues with `Fixes: #` / `Closes
#` / `Refs #` OR (b) described the issue in-PR following the relevant
issue template
- [x] I have not referenced internal/instance-local Paperclip issues or
links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip`
URLs)
- [x] My branch name describes the change (e.g. `docs/...`, `fix/...`)
and contains no internal Paperclip ticket id or instance-derived details
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [ ] All Paperclip CI gates are green
- [ ] Greptile is 5/5 with no open P2s, recommendations, or follow-ups
- [ ] I will address all Greptile and reviewer comments before
requesting merge

🤖 Generated with [Claude Code](https://claude.com/claude-code)

Co-authored-by: Claude Opus 5.5 <noreply@anthropic.com>
2026-11-06 16:25:43 +00:00
Devin FoleyandPaperclip 7840d894fa fix: retain files after accepted remote copy-back exhausts retries (#19491)
## Thinking Path

> - Paperclip is the open source app people use to manage AI agents for
work.
> - Remote workspaces keep unsaved files bound to the run that wrote
them.
> - An accepted result can exhaust its copy-back retries before those
files are saved.
> - Failed-workspace preservation rejects every accepted result, so a
stopped writer can keep the workspace held after a newer setup attempt
fails.
> - This pull request lets the existing owner retain files from that
exact stopped remote writer.
> - File recovery can then release the hold without applying the old
result or repeating its provider work.

## Linked Issues or Issue Description

**What happened?**

A failed native remote writer had an accepted result and exhausted
copy-back retries. Its sandbox was stopped with a valid retained-source
receipt. A newer attempt failed on the writer's unsaved workspace. Task
Retry could not register the missing file-recovery obligation because
preservation returned as soon as it found the old accepted result.

**Expected behavior**

Task Retry must let the existing recovery owner save the exact retained
files. The accepted result, failed attempts and current task must stay
intact. The old provider work must not run again.

**Steps to reproduce**

1. Finish native work in a remote task workspace and accept its
completion result.
2. Exhaust copy-back retries, stop and retain that exact sandbox, and
leave the workspace dirty.
3. Let a newer setup attempt fail on the old writer's hold.
4. Use ordinary task Retry. Before this fix, the missing file obligation
is never recorded.

**Paperclip version or commit**

Reproduced against master at `51a65af9b81f3c60f8210047e9a3eeaada7bc155`
with isolated PostgreSQL and real files.

Related: #19385 preserves accepted copy-back interrupted by Stop. #19422
admits saved input after verified recovery. #19464 and #19466 repair
preparation and Retry continuation. This change covers an older remote
writer whose accepted copy-back has exhausted its retries.

## What Changed

- Admit only terminal, exhausted accepted copy-back on a failed remote
writer with a finished run and no live controller or finalizer.
- Require the exact stop-and-retain receipt, accepted completion
contract and current dirty workspace binding. Keep native-sync sources
on their existing export path.
- Use the existing file-preservation recorder and worker. Add no new
recovery worker, schema, polling or replay path.
- Cover bound and orphaned entry points, reusable leases, changed proof
and the ordinary HTTP Retry journey. Document the recovery behavior.

## Verification

- Causal baseline: the corrected bound-writer and orphaned-lease tests
both fail without the source change and pass with it.
- Assembled acceptance: authenticated HTTP Retry records the old
writer's missing obligation; the real recovery service saves its files;
concurrent continuation calls queue exactly one successor for the newer
failed setup. PostgreSQL, filesystem, tar, Git and the API/service path
are real. Provider transport is controlled, and no model turn is
dispatched.
- `pnpm check:module-boundaries`, `pnpm -r typecheck`, `pnpm build` and
`git diff --check` pass.
- Four full affected recovery suites pass: **659 tests**. Command: `pnpm
--dir server exec vitest run --config vitest.config.ts
src/services/workspace-recovery.test.ts
src/services/native-runtime/native-failed-workspace-recovery.test.ts
src/services/native-runtime/native-cancelled-workspace-preservation.test.ts
src/services/native-runtime/native-workspace-export-retry.test.ts`. This
includes the final 16 new regression, refusal and assembled journey
cases.
- `pnpm verify --explain` completed. It selected broad transitive
coverage; this is planning evidence only. Hosted CI will supply the
remaining broad coverage.
- Dependency cost: extra indexed source/result reads run only for this
exact terminal retained-result path, inside the existing bounded
transaction. Existing notifications activate the existing recovery
owner. No idle scan is added.
- Fixture failures are accounted for: the first fixture used an
active-only stop helper on a released lease. The corrected fixture
produced the causal baseline above. One negative fixture tried to remove
a contract while an accepted result referenced it and failed the
database foreign key. That impossible fixture was removed; the positive
journey passed in the same run. Neither fixture failure is reported as a
product regression or a passing full run.
- Hosted CI is fully green at the reviewed commit: 54 successful checks
and 3 intentional skips, with no incomplete or failed checks. Greptile
is 5/5 with no unresolved threads.
- Hosted rollout and a live task continuation remain pending. Local API
admission does not prove a deployed model run.

## Risks

This expands file preservation for a narrow terminal failure. Wrong
source identity could retain unrelated files; unchanged writer, epoch,
location, provider lease, stop receipt and accepted contract checks fail
closed. Active ownership, unsafe archives, rejected results and
native-sync sources stay on their existing paths. Existing recovery owns
physical source locking, copy verification and bounded retries. It
preserves unknown action outcomes and leaves the accepted result
uncommitted. There is no migration or configuration change.

## Model Used

OpenAI Codex, `gpt-6.1-sol`, xhigh reasoning effort. Context window size
is unavailable. Used repository tools, isolated tests and code
execution. No delegated agents.

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have searched GitHub for duplicate or related PRs and linked
them above
- [x] I have either (a) linked existing issues with `Fixes: #` / `Closes
#` / `Refs #` OR (b) described the issue in-PR following the relevant
issue template
- [x] I have not referenced internal/instance-local Paperclip issues or
links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip`
URLs)
- [x] My branch name describes the change (e.g. `docs/...`, `fix/...`)
and contains no internal Paperclip ticket id or instance-derived details
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [x] All Paperclip CI gates are green
- [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups
- [x] I will address all Greptile and reviewer comments before
requesting merge

Co-authored-by: Paperclip <noreply@paperclip.ing>
2026-11-06 08:23:36 -08:00
51a65af9b8 fix(recovery): continue preserved preparation after process loss (#19464)
## Thinking Path

> - Paperclip manages AI agents and their execution state.
> - A server restart can stop workspace preparation before provider
execution.
> - Workspace recovery must preserve files before the task can continue.
> - Recovery handled interrupted preparations but skipped failed
process-loss records with the same no-provider certificate.
> - A withheld first retry could also hide the remaining retry budget.
> - This change resumes certified preparations through normal admission
after file recovery.

## Linked Issues or Issue Description

**What happened?**
A process-loss attempt remained failed after workspace recovery
completed. Its first retry had been cancelled before dispatch by the
workspace hold. The task had no running attempt or automatic
continuation.

**Expected behavior**
Continue once after the server proves that provider work did not start,
file preservation completed, and the exact leases stopped. Retain the
existing failure budget and all task admission gates.

**Steps to reproduce**
1. Stop a Runner preparation before native runtime selection. Record the
restart recovery bootstrap certificate.
2. Retain the workspace and withhold the first automatic retry before
dispatch.
3. Complete file preservation and restart the recovery worker.
4. Observe that the old code schedules no successor. The regression test
reproduces this with PostgreSQL and real filesystem operations.

**Paperclip version or commit**
Reproduced against master at `2f35eb1080`. Related prior work: #19422
continues saved user input after verified copy-back. This change handles
automatic continuation of certified process-loss preparation.

## What Changed

- Accept failed process-loss preparation only with the durable
no-provider bootstrap certificate and existing execution, lease and file
checks.
- Discover and settle the recovered source through the existing
preparation recovery path.
- Continue from a verified withheld retry without rewriting its history
or resetting its failure count. Adopt it only as the sole retry child;
multiple-child history reuses the newest existing child
deterministically.
- Exercise automatic dispatch, preserved-file readback, one provider
turn, accepted result and task completion in the local native-session
fixture.
- Keep a durable continuation receipt after file-hold settlement until a
successor is recorded. Known gates wait for existing eligibility events.
Unresolved delivery keeps its shared recovery deadline.
- Document the recovery and retry-budget rules.

## Verification

- Red: both new PostgreSQL/filesystem regressions failed with zero
scheduled successors where one was required.
- Green: 54 focused recovery, automatic-dispatch, interruption,
multiple-child history and admission safety cases pass on `13c27c2c2f`.
The full PostgreSQL admission adapter suite passes all 83 tests; server
source declaration typecheck also passes. Local environment: Darwin
arm64, Node 26.4.0, PostgreSQL 18.1, Vitest 5.0.3.
- Additional red/green: interruption after committed settlement,
pause/resume, failed enqueue after cursor advancement, and absence of an
earlier retry all failed before their repairs. Restart before enqueue,
restart after the successor claim, and pause/resume now preserve one
continuation. A rolled-back eligibility change cannot start execution.
Deferred and delivered records have no retry deadline.
- Local acceptance uses the real heartbeat dispatcher, isolated files
and PostgreSQL, with a simulated native provider. It reads the preserved
file, writes continued work, accepts the structured result and completes
the task once.
- Negative cases retain no-certificate, provider-evidence, live-owner,
Stop, missing-stop-receipt, wrong-snapshot, human-block, pause,
reassignment, approval and exhaustion fences.
- CI fixture regression: 4 error-propagation/concurrent-resolution cases
pass after adding the new obligation read to their transaction stubs;
existing assertions remain unchanged.
- Existing idle-drain and notification contract regressions: 4 tests
pass after restricting recovery wakes to actual durable obligations.
Late approvals block scheduled, queued and final dispatch.
- Additional existing retry-scheduling suite: 62 cases pass locally. The
pre-provider quota case exceeds its existing 5-second terminal wait on
this loaded Darwin host, including when tested alone and with the
preceding retry implementation. It remains a local timing limitation;
the assertion and timeout were not changed. All Linux CI server shards
pass on the combined head, including this unchanged suite.
- Existing run-control, legacy-recovery and shared execution-control
lifecycle suites: 128 tests pass with the review repair. Required CI
supplies final-revision broad coverage.
- Real-Codex acceptance was not run: automatic approval review rejected
authenticated provider execution because it could incur cost/external
effects and required explicit approval. No provider call ran; the
controlled-provider acceptance covers the causal restart and durable
scheduling behavior.
- Hosted acceptance and recovery of existing tasks require rollout. They
have not been claimed from the local provider fixture.
- Final-head review: Greptile 5/5 on `13c27c2c2f`, no outstanding
findings. Another contributor added the multiple-child history safety
repair in `13c27c2c2f` while CI was running. The delta was inspected and
the 54 focused recovery cases rerun successfully. Required CI passes on
that exact combined head:
https://github.com/paperclipai/paperclip/actions/runs/42241794918. All
55 successful checks include aggregate `ci / verify`, typecheck, build,
canary, all server and E2E shards, and Runner package/Rust/static
checks. The separate Paperclip Review service check remains queued
waiting for its assigned agent; no validated assessment has been
returned.

## Risks

A malformed preparation certificate or a false no-execution receipt
could permit duplicate work. The existing checks still reject provider
execution records, native coordinators, live controllers, unsettled
leases and unverified files. The pending continuation must survive a
restart without polling known admission blockers. A withheld retry
retains its original row and consumes its remaining failure budget.
Normal admission checks current ownership, approvals, pause and budgets.

## Model Used

OpenAI GPT-6 family via Codex. The exact model ID and context window are
unavailable in session metadata. Used reasoning, code editing and tool
execution.

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have searched GitHub for duplicate or related PRs and linked
them above
- [x] I have either (a) linked existing issues with `Fixes: #` / `Closes
#` / `Refs #` OR (b) described the issue in-PR following the relevant
issue template
- [x] I have not referenced internal/instance-local Paperclip issues or
links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip`
URLs)
- [x] My branch name describes the change (e.g. `docs/...`, `fix/...`)
and contains no internal task id or instance-derived details
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [x] All Paperclip CI gates are green
- [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups
- [x] I will address all Greptile and reviewer comments before
requesting merge

---------

Co-authored-by: Paperclip <noreply@paperclip.ing>
Co-authored-by: Devin Foley <devin@paperclip.ing>
2026-11-06 09:36:46 -06:00
Nicky LeachandClaude Opus 5.5 83c6832ccb fix(build): typecheck package, Playwright, and e2e test files in CI (#18839)
## Thinking Path

> - Paperclip is the open source app people use to manage AI agents for
work
> - Runner, plugin, and Playwright tests verify how those agents run,
connect, and appear in the board
> - Most package tsconfigs exclude tests, and Vitest strips types, so a
type error in those tests fails nothing
> - The tests drifted to 803 real type errors, and some of those errors
hid assertions that checked nothing
> - paperclipai/paperclip#18739 and paperclipai/paperclip#18738 check
the server test tree and four test projects, but not these files
> - This pull request adds a required check for these test files, fixes
every error, and fails CI if a test file is in no program
> - The benefit is that a type error in any test file outside
`server/src` now fails CI

## Linked Issues or Issue Description

Refs #18739
Refs #18738

**What happened?**

517 test files were in no program that required CI checks. A type error
in those files did not fail CI.

**Expected behavior**

CI fails on a type error in any test file.

**Steps to reproduce**

Add `export const value: number = "text";` to a test file under
`packages/paperclip-runner/src` on master. CI stays green, because
`tsconfig.json` excludes test files and Vitest strips types.

**Measured gap**

Each row is a program with its tests included, on one thread. File and
error counts are for head `7d4b5e907a`. Memory peaks were measured
before the two latest merges of master.

| Group | Test files | Real errors | Peak |
| --- | ---: | ---: | ---: |
| `paperclip-runner` Node source | 290 | 644 | 1.09 GiB |
| `paperclip-runner` surfaces | 9 | 12 | 0.42 GiB |
| `paperclip-runner` devtools and examples | 14 | 0 | 0.68 GiB |
| `sandbox-providers/kubernetes` | 21 | 65 | 0.44 GiB |
| 8 other sandbox providers and `bridge-template` | 32 | 4 | 0.34 GiB |
| `plugins/sdk` | 22 | 15 | 0.41 GiB |
| `plugin-workspace-diff` | 5 | 0 | 0.37 GiB |
| `plugin-orchestration-smoke-example` | 1 | 1 | 0.15 GiB |
| `kv-demo-mcp-server` | 3 | 0 | 0.13 GiB |
| `packages/db` scripts | 1 | 0 | 1.01 GiB |
| 8 Playwright suites under `tests/` | 52 | 25 | 1.72 GiB |
| `tests/runner-acceptance` | 3 | 0 | 0.58 GiB |
| `tests/e2e`, through layer declarations | 63 | 37 | at most 1.59 GiB |
| `ui` `AttentionInteractionResolver.test.tsx` | 1 | 0 | n/a |
| **Total** | **517** | **803** | |

27 of the 803 errors came from master while this pull request was open.
Each merge of master brought new test code that no check had read.

Errors that were config errors, not real errors:

- One TS2688 for each provider, because the root install does not
install provider dependencies.
- 9 in the Runner Node program (TS7016 and TS6059).
- 2 in `tsconfig.browser.json`. TypeScript 7 removed `baseUrl`, so that
config was invalid.
- 213 in the Playwright suites (`@/*` aliases and Vite types).
- About 60 in `tests/e2e` (import extensions and aliases).

`packages/plugins/create-paperclip-plugin` has no gap. Its tsconfig
excludes its test, but `cli/tsconfig.json` reaches that test through an
import. `server/test-baselines` also has no gap, because
`tests/lifecycle-baseline` reads it.

## What Changed

- Added `scripts/typecheck-test-programs.mjs` and its tests. The
`Typecheck + Release Registry` job runs it. It checks each program in
`PROGRAMS` on one thread.
- The script fails if a tracked `*.test.ts(x)` or `*.spec.ts(x)` file
outside `server/src` is in no program. The compiler file list decides
this, because `include` drops `foo.test.tsx` when `foo.test.ts` exists.
- Added a `tsconfig.test.json` to each uncovered package, and
`tests/tsconfig.playwright.json`.
- Added `tests/e2e` to `PROJECTS` in
`scripts/typecheck-test-projects.mjs`, with a `tsconfig.json` and a
`tsconfig.layers.json`.
- Added `scripts/typecheck-sandbox-providers`. It is a small workspace
that installs provider SDKs from one lockfile. I did not add a lockfile
inside each provider, because
`scripts/build-standalone-public-packages.mjs` uses a frozen install
when one exists, and that changes what a release resolves.
- Corrected `packages/paperclip-runner/tsconfig.browser.json` for
TypeScript 7.
- Set `rootDir` to `..` in
`packages/paperclip-runner/tsconfig.test.json`, because one Runner test
imports from `packages/adapter-utils/src`. The program does not emit
files, so this changes no build output.
- Moved the Kubernetes provider from `vitest ^3.2.4` to `^4.1.8`, the
version the other providers use. Vitest 3 requires `tinypool ^1.1.1`,
which has two critical advisories (GHSA-85c8-ppgw-ccpr and
GHSA-5gmw-xhrv-c9v3). The first patched version is 2.1.2. Its tests have
the same result on both versions: 189 passed, and the same 12
`file-sync` tests failed.
- Moved the Kubernetes provider from `zod ^3.24.2` to `^4.6.6`, and gave
its two `z.record` calls a key schema. This is the only production
change, and it stays in this pull request. See "Production change for
review".
- Renamed `AttentionInteractionResolver.test.ts` to
`AttentionInteractionResolver.replace.test.ts`, so TypeScript reads the
`.test.tsx` beside it.
- Fixed all 803 errors, with changes to test files and test support
only. The fix for `contracts/native-execution.test.ts` is the same as
the fix in paperclipai/paperclip#18739, so those two changes merge
cleanly.
- Updated `doc/DEVELOPING.md`.

This pull request does not edit `server/scripts/typecheck-layers.mjs`.
paperclipai/paperclip#18739 and paperclipai/paperclip#18738 have both
merged, and this branch includes them.

### Production change for review

The new lockfile made dependency review flag `zod@3.25.76` as a
high-severity advisory (GHSA-mrhx-c7xc-m3w5). The first patched version
is 4.6.6, so 3.x has no fix. The published Kubernetes plugin uses zod to
validate operator config. The zod 3 source does not compile against zod
4, so a typecheck-only override cannot fix this.

The existing tests do not prove this change, because they also passed
with the invalid one-argument `z.record`. So I parsed 45 inputs with the
same schema on zod 3.25.76 and zod 4.6.7:

| Result | Inputs | Detail |
| --- | ---: | --- |
| Identical | 23 | Includes defaults, valid config, and a `__proto__`
key |
| Same outcome, new error wording | 21 | For example, `Invalid url` is
now `Invalid URL`. `validateConfig` shows this text to operators. |
| Different outcome | 1 | `jobTtlSecondsAfterFinished: 2 ** 60` was
valid and is now rejected. The new limit is `Number.MAX_SAFE_INTEGER`. |

I did not test this against a real cluster.

The decision is to keep this change in this pull request. Since then,
paperclipai/paperclip#17364 has moved the rest of the repository to zod
4.6.x, so the Kubernetes plugin now matches it.

### Behavior change for review

`reducedMotion` under `use` is not a Playwright option. It had no effect
in 11 configs and 2 `test.use` calls, so those suites ran with
`no-preference`. The options are now under `contextOptions`, so reduced
motion now takes effect. `app-shell-design.spec.ts` asserts a real
transition, so it now asks for `no-preference` itself.

The baseline manifest has `snapshotCount: 0`, so this invalidates no
published baseline. A frozen trial reference PNG can differ.

### Findings

These are product questions. I did not change them, and I did not hide
them with casts:

1. **`PrpEvent` and its schema disagree.** The TypeScript type in
`src/protocol/replay-contract.ts` requires `normalizedSessionId`. The
`required` list in `protocol/schemas/event.schema.json` does not include
it. `validatePrpEvent` accepts events that the type forbids.
2. **`requestCheckboxConfirmation` is stricter than its runtime.** It
uses the output type, so plugin authors must pass `continuationPolicy`
and `allowDeclineReason`, although the schema gives them defaults.
`z.input` would fix this.
3. **`RetainedRunnerdMaintenanceInput.backend.kind` is a free string.**
The quarantine domain comes from `descriptor.kind`, but the release uses
`proof.backend.kind`. If they differ,
`completeRetainedNativeSessionCleanup` returns 0 and the quarantine
stays. The production caller passes `"runner"` today, so this is not a
live bug.
4. **`CodexHarnessSession.close(input?)` is optional, but the contract
requires `{ reason }`.**

These are tests that verified nothing. I corrected them, and they pass:

- `backends/native-instruction-measurement.test.ts` filtered on
`placement === "core"`, which is not a valid placement. It measured an
empty tool list. It now measures 14 tools.
- `drivers/acpx/codex-acpx-driver.test.ts` checked for `usage.updated`,
which is not an event type.
- The `hostFixture()` helper in `drivers/acpx/runtime-host.test.ts`
ignored two overrides, so
`expect(prepareSandbox).not.toHaveBeenCalled()` could not fail.
- `live/live-session.test.ts` set `agent: "pi"` before a spread that
overwrote it.
- `native-distribution-integrity.test.ts` passed an AbortSignal where
`openCommand` expects `{ signal }`.

These are gaps that this pull request does not close:

- **The root lockfile still has some old zod versions.**
paperclipai/paperclip#17364 moved the direct zod dependencies to 4.6.x.
`pnpm-lock.yaml` still resolves `zod@3.25.76`, `4.1.11`, and `4.4.3`,
which are below the patched 4.6.6.
`packages/paperclip-runner/scripts/pi-distribution/package.json` pins
`zod` to `3.25.76`, and some agent SDKs resolve `4.4.3`. Dependency
review does not flag them, because this pull request does not add them.
- **Dead GitHub coverage.** `chat-adapters-ui-providers.spec.ts`
returned early for GitHub, so four later `provider === "github"`
branches never ran. I removed them. They included the private key file
and paste match, and the reconnect flow. Nothing asserts those behaviors
in that spec now.
- **Provider tests do not run in CI.** The root `vitest.config.ts` lists
only Daytona. The other 8 providers, `bridge-template` included, are
typechecked now, but CI does not run their tests.
- **One `packages/db` test never runs.**
`scripts/clean-poisoned-claude-sessions.test.ts` is outside the
`include` of `packages/db/vitest.config.ts`.
- **`plugin-orchestration-smoke-example` does not collect.**
`@paperclipai/shared` is not linked in its `node_modules`. It passes 3
of 3 with an alias.

## Verification

Run these commands:

```sh
node scripts/typecheck-test-programs.mjs --low-memory
pnpm --filter @paperclipai/server typecheck
node scripts/typecheck-test-projects.mjs --low-memory --reuse-declarations
node --test scripts/typecheck-test-programs.test.mjs
```

Results on macOS (arm64), Node 26.12. CI uses Node 24, and its
`Typecheck + Release Registry` job also passes. At head `7d4b5e907a`,
the test programs, `tests/e2e`, and the script tests pass again with 0
errors. The times and peaks below come from the run before the two
latest merges of master:

| Check | Result |
| --- | --- |
| Test programs, `--low-memory` | Exit 0, 0 errors, 42 seconds, peak
1.78 GiB |
| Server layers, low memory | Exit 0, 0 errors, 38 seconds, peak 3.41
GiB |
| Test projects, including `tests/e2e` | Exit 0, 0 errors, 13 seconds,
peak 1.59 GiB |
| Script tests | 12 passed |
| Injected type error in each of 23 places | Each one failed its program
with TS2322 |
| Coverage check | 0 unchecked files, 10 seconds |

I did not run this in a 4 GiB container. The peaks above are `maximum
resident set size` for the largest single process.

**Runtime check of the fixes.** Types do not prove that a test still
works, so I ran the suites before the two latest merges of master:

| Suite | Result |
| --- | --- |
| Runner, full suite | 4,885 passed, 3 failed, 13 skipped |
| Sandbox providers, 10 packages | 939 passed, 12 failed, 36 skipped |
| Plugin SDK | 200 passed |
| `kv-demo-mcp-server` | 12 passed |
| Renamed UI test and its sibling | 4 passed |

All 15 failures exist without these fixes or come from the local
machine:

- **3 Cursor Cloud timeouts.** `artifact-delivery.test.ts` has 1 and
`cursor-cloud-driver.test.ts` has 2. They time out in a full local run,
and all 133 tests in those files with `codex-security-config.test.ts`
pass when run alone. They fail in the same way with those two files at
their unedited versions.
- **12 Kubernetes `file-sync.test.ts` failures.** They fail in the same
way before and after the fixes. The first failure is that
`/proc/self/fd` does not exist on macOS.

After each of the two latest merges of master, I ran only the Runner
test files that I changed:

| Merge | Result |
| --- | --- |
| `885c249cb9`, 8 files | 534 passed |
| `7d4b5e907a`, 7 files | 672 passed, 16 failed |

The 16 failures are in the two `source-reconciliation` test files. They
fail in the same way with master's unedited versions of those files. 15
of them fail with `ACPX sidecar exited at initialize`, so I think my
local build of the Rust and sidecar binaries is out of date. I did not
rebuild them to check. CI builds them from scratch, and all Runner jobs
pass in CI at `7d4b5e907a`.

**Not run:**

- `tests/e2e` and the 8 Playwright suites need a server, so most of them
have only compile checks. `playwright test --list` loads 308 tests from
the main e2e config.
- `packages/plugins/sandbox-providers/kubernetes/test/integration` needs
a cluster, so it has only compile checks.
- I did not run the full `pnpm test:run` or root `pnpm build`. Required
CI runs them.

**Reduced motion.** I ran 6 motion-sensitive Storybook specs in system
Chrome with a temporary config, once with `reduce` and once with
`no-preference`. Both runs had 45 passed and the same 5 failed. So
reduced motion did not change those results. The 5 failures do not
depend on motion. At least one comes from the browser, because system
Chrome prints `oklch(55.6% 0 0)` where the test expects `oklch(0.556 0
0)`. I did not run the other Storybook specs. The `storybook-visual`
label runs that workflow.

## Risks

- **A new lockfile to maintain.** A change to a provider `package.json`
now fails the typecheck job until someone refreshes
`scripts/typecheck-sandbox-providers/pnpm-lock.yaml`. The failure
message gives the command.
- **The job has a new install.** The step downloads provider SDKs, so it
depends on the npm registry. It uses `--frozen-lockfile` and
`--ignore-scripts`.
- **The local install replaces provider `node_modules`.** A contributor
with a standalone provider install must reinstall that provider after
running the script.
- **Reduced motion can change Storybook results.** See "Behavior change
for review". That workflow is not part of required CI.
- **Kubernetes plugin validation changed.** A release of this plugin
ships zod 4. Error wording changes, and very large integers are now
rejected. See "Production change for review".
- **Master moves fast.** Each merge of master brought new test code with
type errors, 27 so far. After this merges, the check reports those
errors in the pull request that adds them.

## Model Used

- Provider: Anthropic Claude, through Claude Code
- Model: Claude Opus 5.5 (`claude-opus-5-5`)
- Capabilities: tool use, code execution, and subagents for the type
fixes in separate files

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have searched GitHub for duplicate or related PRs and linked
them above
- [x] I have either (a) linked existing issues with `Fixes: #` / `Closes
#` / `Refs #` OR (b) described the issue in-PR following the relevant
issue template
- [x] I have not referenced internal/instance-local Paperclip issues or
links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip`
URLs)
- [ ] My branch name describes the change (e.g. `docs/...`, `fix/...`)
and contains no internal Paperclip ticket id or instance-derived
details. The app generated the branch name.
- [ ] I have run tests locally and they pass. See the failures explained
in Verification.
- [x] I have added or updated tests where applicable
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [x] All Paperclip CI gates are green
- [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups
- [x] I will address all Greptile and reviewer comments before
requesting merge

🤖 Generated with [Claude Code](https://claude.com/claude-code)

---------

Co-authored-by: Claude Opus 5.5 <noreply@anthropic.com>
2026-11-06 07:33:59 -08:00
Nicky LeachandClaude Opus 5.5 18ff71bca3 fix(ci): load the lockfile policy from the current base-branch tip (#19390)
## Thinking Path

> - Paperclip is the open source app people use to manage AI agents for
work
> - Only trusted environments may change `pnpm-lock.yaml`. #19356 moved
that rule into `.github/scripts/lockfile-trust.mjs`.
> - The `pr-trusted.yml` policy job loads that script from trusted code,
so a pull request cannot change the check that judges it.
> - The job reads the trusted commit from `pull_request.base.sha`.
GitHub does not move that value forward on every push.
> - #17364 showed the result. Its recorded base was still the `master`
commit from before #19356, so the job used the earlier rule.
> - The earlier rule exempts any branch named `chore/refresh-lockfile`,
including one from a fork.
> - This pull request loads the policy from the first parent of GitHub's
merge commit, which is the current base-branch tip.
> - The benefit is that every pull request gets the current lockfile
policy, including pull requests opened before #19356.

## Linked Issues or Issue Description

Refs #19356, #17364.

**What happened?**
On #17364 at `482d76686e`, the "Block untrusted lockfile edits" step
printed nothing and passed. `pull_request.base.sha` was `da3084a05d`,
the `master` commit from before #19356. That commit has no
`lockfile-trust.mjs`, so the step used the earlier rule. The merge
commit that CI tested already contained #19356.

**Expected behavior**
The policy job runs the current `lockfile-trust.mjs` from `master` for
every pull request.

**Steps to reproduce**
1. Open a pull request before #19356 merged, or keep a pull request
whose recorded base predates it.
2. Push a commit. GitHub keeps the old `pull_request.base.sha`.
3. The policy job uses the earlier rule. A fork branch named
`chore/refresh-lockfile` can still change `pnpm-lock.yaml`.

**Also found**
In a local test, the script exited 0 without any check when it ran from
a symlinked temporary directory. Its entry-point check compared a
symlinked path with a real path. GitHub-hosted Linux runners do not use
a symlinked `RUNNER_TEMP`, but the check must fail closed.

## What Changed

- `pr-trusted.yml` "Block untrusted lockfile edits":
- Load `lockfile-trust.mjs` from `$GITHUB_SHA^1`, the first parent of
GitHub's merge commit. Do this only when `$GITHUB_SHA^2` is the PR head.
Otherwise, keep `pull_request.base.sha`.
  - Give the script the same trusted base for its diff.
  - Fail the step if the script writes no `writer=` output.
- `lockfile-trust.mjs`: compare real paths in the entry-point check.
- `lockfile-trust.test.mjs`: run the real step script against a git
history with a stale recorded base and a merge commit. Check that it
blocks a contributor lockfile change on a `chore/refresh-lockfile`
branch, allows a docs-only change, and falls back to the recorded base
when no merge commit is present.
- `doc/RELEASE-AUTOMATION-SETUP.md`: state where the job loads the
policy from.

## Verification

- `node --test '.github/scripts/tests/*.test.mjs'`: 709 passed.
- The new stale-base test fails when the workflow change is removed.
- The policy-step tests run with `RUNNER_TEMP` behind a symlink. They
fail when the realpath fix is removed.
- A test loads a policy that exits 0 without writing `writer=`. It fails
when the fail-closed check is removed.
- This pull request's own CI uses `pr-trusted.yml` from `master`. The
new step takes effect after merge.

## Risks

- If the checkout is not GitHub's merge commit, the step falls back to
`pull_request.base.sha`, which is the current behavior. The
`pull_request` event always checks out the merge commit by default.
- The fail-closed check can fail a pull request if the script stops
writing `writer=`. The script writes it on every path that returns.
- Low risk otherwise. The change touches one workflow step, one script
line, tests, and docs.

## Model Used

- Anthropic Claude Opus 5.5 (`claude-opus-5-5`), with tool use and code
execution, in Claude Code.

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have searched GitHub for duplicate or related PRs and linked
them above
- [x] I have either (a) linked existing issues with `Fixes: #` / `Closes
#` / `Refs #` OR (b) described the issue in-PR following the relevant
issue template
- [x] I have not referenced internal/instance-local Paperclip issues or
links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip`
URLs)
- [x] My branch name describes the change (e.g. `docs/...`, `fix/...`)
and contains no internal Paperclip ticket id or instance-derived details
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [x] All Paperclip CI gates are green
- [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups
- [x] I will address all Greptile and reviewer comments before
requesting merge

🤖 Generated with [Claude Code](https://claude.com/claude-code)

---------

Co-authored-by: Claude Opus 5.5 <noreply@anthropic.com>
2026-11-06 07:25:41 -08:00
Nicky LeachandPaperclip 26071353d2 feat(plugins): define settled task release and resume (#19468)
## Thinking Path

> - Paperclip is the open source app people use to manage AI agents for
work.
> - Environment plugins provide Runner tasks through the public SDK.
> - A settled turn can leave resources that a later run can reuse.
> - Core needs a shared contract to end active use and request the same
logical session later.
> - The host must retain control of capacity and report when reuse is
unavailable.
> - This pull request adds an optional release and resume contract with
strict validation and documentation.
> - The benefit is a common boundary for later host and Core integration
across Codex and ACPX.

## Linked Issues or Issue Description

**Subsystem affected**

packages/plugins — plugin SDK and its environment task documentation.

**Problem or motivation**

The SDK has stop and completion operations. It has no explicit contract
to release active use after a settled turn and later request the same
logical session without promising retention or the same process.

**Proposed solution**

Add a versioned optional capability, release for the identified session,
and resume with fresh transient authentication. Define two explicit
resume outcomes: resumed or unavailable. Keep authorization, safe
retries and ordinary attachment requirements explicit.

**Alternatives considered**

A provider-specific command would couple Core to one host. Reusing stop,
completion or archive would change their existing meaning. A new
checkpoint format or Runner mode is unnecessary.

**Roadmap alignment**

This extends the existing plugin and sandbox boundaries in ROADMAP.md.
It adds no Core caller, provider implementation or runtime activation.

**Additional context**

The duplicate search found #19371, which fixes Core failure cleanup for
a session resume owner. Its scope is separate. Related recovery work in
#19157 and admission work in #19196 remain unchanged.

## What Changed

- Add strict release and resume operation/result schemas and optional
releaseResumeVersion: 1.
- Reuse the existing task identity, inferred SDK exports and worker RPC
types.
- Define settled release, host retention policy, atomic reuse
reservation, fresh authentication, retries that cannot release a newer
owner and ordinary recovery.
- Add schema and serialized worker RPC tests, including legacy replies
and failure cases.

## Verification

- SDK typecheck: `node_modules/.bin/tsc -p
packages/plugins/sdk/tsconfig.json --noEmit` passed.
- From `packages/plugins/sdk`, `../../../node_modules/.bin/vitest run
--config vitest.config.ts tests/environment-task-release-resume.test.ts
tests/environment-tasks.test.ts tests/environment-task-error.test.ts
tests/environment-task-error-code.test.ts tests/worker-rpc-host.test.ts`
passed: 94 tests across five suites.
- `git diff --check` passed.
- [Full GitHub
CI](https://github.com/paperclipai/paperclip/actions/runs/42238743059)
passed on `a55376801c91af29b68a13304d085706e4d7ed6f`. Standard Greptile
scored that head 5/5 with no comments or unresolved review threads.
- Full regressions run in GitHub CI, per the requested verification
scope. No VM, deployment or live provider test was run. These tests
prove the SDK boundary, not host retention or live attachment.

## Risks

- This is an optional contract. Runtime behavior stays unchanged until
later host and Core work uses it.
- Older strict Core schemas reject the new description field. Providers
must coordinate capability advertisement with a compatible Core.
- Host implementations must enforce settlement, exact authority,
exclusive claims and safe retries. Unknown outcomes remain errors. An
unavailable result never proves physical termination.

> For core feature work, check [`ROADMAP.md`](ROADMAP.md) first and
discuss it in `#dev` before opening the PR. Feature PRs that overlap
with planned core work may need to be redirected — check the roadmap
first. See `CONTRIBUTING.md`.

## Model Used

OpenAI GPT-6.1 Sol (`gpt-6.1-sol`), high reasoning, with repository
inspection, code editing and local test tools. Context window size was
not exposed by the runtime.

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have searched GitHub for duplicate or related PRs and linked
them above
- [x] I have either (a) linked existing issues with `Fixes: #` / `Closes
#` / `Refs #` OR (b) described the issue in-PR following the relevant
issue template
- [x] I have not referenced internal/instance-local Paperclip issues or
links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip`
URLs)
- [x] My branch name describes the change (e.g. `docs/...`, `fix/...`)
and contains no internal Paperclip ticket id or instance-derived details
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [x] All Paperclip CI gates are green
- [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups
- [x] I will address all Greptile and reviewer comments before
requesting merge

Co-authored-by: Paperclip <noreply@paperclip.ing>
2026-11-06 07:23:28 -08:00
Nicky LeachandClaude Opus 5.5 026dc6d135 fix(native): release a session-resume owner when the resumed run fails before its provider claim (#19371)
## Thinking Path

> - Paperclip is the open source app people use to manage AI agents for
work
> - Native runs keep a finalization row. Its lease owner tells the
control plane that an execution may still be live.
> - Pausing an agent waits for `agentExecutionsHaveStopped`. That check
refuses to finish while any run of the agent has a lease owner, unless
the run was cancelled and has stop proof.
> - A same-run session resume claims that lease before it dispatches the
run. If the run then fails before the native executor takes its own
provider claim, nothing releases the resume owner.
> - The leaked owner blocks pause and resume for good, and the task
keeps looking like it has a live recovery path.
> - This pull request settles those rows at the source, and it adds a
stop-proof-gated release for rows that already leaked.
> - The benefit is that agents can pause and resume after an ordinary
resume failure, without database edits, and the cancelled-run stop-proof
rule stays as it is.

## Linked Issues or Issue Description

**What happened?**

An agent stayed in `pausing` with `hostComplete=false` and climbing
attempts. Its runs had `native_run_finalizations` rows with `phase:
observed`, `recovery_state: resuming_session`, a `lease_owner` like
`default:resume:<uuid>`, and no `result_id`. Each heartbeat run had
ended `failed`: either `setup_failed` (`Failed to acquire lease for
environment … Sandbox creation has failed`,
`native_remote_recovery_lease_mismatch`) or `adapter_failed`
(`runner_state_identity_mismatch: …`). The lease expired about 20
minutes after the run finished. Nothing settled the row. The only fix
was to set `lease_owner` to null by hand.

**Expected behavior**

When a resumed run fails before any provider turn starts, its
finalization row goes to `terminal_failure` and its lease owner is
released, as the native executor does for failures it sees. A row that
leaked before this fix is released in the background once its lease
expires and the run has stop proof. Pause then completes.

**Steps to reproduce**

1. Leave a native run in `retryable_failure` with a persisted
checkpoint, on a task that already has an active recovery incident.
2. Let session resume claim it (`claimNativeSessionResumptions` sets
`phase: observed` and a `…:resume:…` owner).
3. Make the resumed run fail before the executor claims it, for example
when the environment driver cannot create the sandbox.
4. The heartbeat failure path marks the run `failed`. The issue release
path does not settle the row, because it settles only when it opens a
new incident. The owner stays set, and `agentExecutionsHaveStopped`
returns false indefinitely.

**Paperclip version or commit**

`master` at 5ac05871b5.

**Additional context**

Root cause: two writers can end a resumed run without the executor.
`failRun` and the setup-failure path in `heartbeat/run-completion.ts`
never touch the coordinator. `recordNativeTerminalRecoveryIfNeeded` in
the wake-queue adapter settles the coordinator only when no recovery
incident exists yet. Agents that need their computer connection paired
again usually already have an incident, so the owner leaks.

Related, but different: #18905, #18866, #18072, and #17692 change how
the stop check judges runs. This pull request does not change the stop
check.

## What Changed

-
`server/src/services/native-runtime/native-failed-run-owner-release.ts`
(new): one settlement for a result-less `observed` owner on a run that
ended `failed`, `timed_out`, or `interrupted`. It writes
`terminal_failure`, null lease fields, `recoveryState: "blocked"`, the
run's failure code, and a `releasedOwner` record. It sets `nativePhase`,
sends the same finalization and execution work notifications as the
executor's terminal path, and logs `native.failed_run_owner_released`
activity. Locks follow the issue, coordinator, run order.
- `settleUnstartedNativeSessionResume`: runs after a dispatched session
resume returns. It matches only the exact claim owner and the attempt
the claim saw. The executor increments the attempt when it takes
provider ownership, so an unchanged attempt proves that no provider turn
started under this owner. The executor's own failures no longer match.
- `releaseAbandonedNativeOwners`: the background release for rows that
already leaked. It requires an expired lease and all of the stop proof
that `agentExecutionsHaveStopped` checks: settled environment leases, no
live run process or process group, no live controller lease, and no live
controller process. This process answers from its in-memory execution
registries. It skips cancelled runs, pending native Stops, and pinned
workspace restores, because those have their own stop-proof owners.
- `native-finalization-reconciler.ts`: `NativeSessionResumeClaim` now
carries `attempt`.
- `heartbeat.ts` and `heartbeat/recovery.ts`: both session-resume
dispatch sites settle the claim after `executeRun` returns. This is one
`.finally` per site.
- `execution-control-reconciliation.ts` and `execution-control-work.ts`:
the execution-finalization queue runs the background release. Its
deadline includes the earliest lease expiry among eligible rows, so the
release does not poll an idle instance. Rows with unreleased sandboxes
are excluded from the deadline.
- `agent-execution-stop.ts` is unchanged. The cancelled-only release
keeps its stop-proof rule.

## Verification

- `npx vitest run
src/__tests__/heartbeat-native-resume-lease-failure.test.ts` drives the
real heartbeat resume dispatch (`reapOrphanedRuns`). A sandbox driver's
`acquireRunLease` throws `Sandbox creation has failed`, and the task has
a recovery incident. The run fails with `Failed to acquire lease for
environment "Managed computer" (sandbox): Sandbox creation has failed`,
and the coordinator ends `terminal_failure` with no lease owner. I
removed the `.finally` wiring and ran the test again. It then failed,
and the row stayed `observed` with a `default:resume:` owner and a
20-minute expiry, which is the production state.
- `npx vitest run
src/services/native-runtime/native-failed-run-owner-release.test.ts` (10
tests):
- A claimed resume that fails at lease acquisition is settled.
`agentExecutionsHaveStopped` changes from false to true. A repeated
settlement does nothing.
- An owner the executor claimed (incremented attempt) and a run that is
still running are not changed.
- A leaked `runner_state_identity_mismatch` row is released by
`reconcileAbandonedExecutionControl`, and then
`agentExecutionsHaveStopped` returns true.
- An unexpired owner still blocks the stop check. Its expiry becomes the
finalization queue deadline.
- An active environment lease and a live controller process block
release. After both stop, the row is released.
  - Cancelled runs and pending native Stops are not changed.
  - Added during review:
    - Releasing an owner wakes the cost-accounting worker.
- Releasing a run's environment lease wakes the finalization worker, and
the owner is then released.
- A recorded PID and group that now belong to an unrelated process do
not hold the owner.
- Bounded passes rotate past a held row (`[0, 1, 1]` with page size 1),
then wrap back to it.
- The immediate settle keeps the owner while the run's recorded process
is alive.
- Suites that cover the changed files pass together: the two new files,
`native-session-resumption.test.ts` (with the claim shape updated),
`execution-control-reconciliation.test.ts`,
`execution-control-work.test.ts`, and
`agent-lifecycle/__tests__/lifecycle.test.ts`. With
`environment-cleanup-work.test.ts` added, that is 7 files and 156 tests.
I did not run the full `heartbeat-process-recovery.test.ts` suite
locally. CI runs it.
- `pnpm --filter @paperclipai/server typecheck` passes.

## Risks

- Behaviour change: a resumed run that fails during setup now ends with
a terminal coordinator in every case. Before, this happened only when
the issue release path opened a new incident. After a restart, restart
recovery no longer sees such a row as `observed`. This matches what the
release path already does when no incident exists.
- The background release trusts an expired lease on a run that is
already terminal, together with the same process and lease evidence that
the stop check uses. A controller on another host cannot be probed by
PID. The stop check has the same limit today. A live owner still renews
its lease, and lease-gated writes from an expired owner are already
refused.
- If an expired row's process or controller still looks live, the
release retries at the shared 15-second finalization cadence until that
process exits. Each pass handles one bounded page, and a rotating cursor
moves to the next page on each pass.
- A run-scoped environment cleanup notification now also wakes the
execution-finalization queue. Passes are coalesced, and a pass is a
cheap deadline query when nothing is eligible.
- No schema change and no migration.

## Model Used

- Claude Opus 5.5 (`claude-opus-5-5`) through Claude Code, with tool use
(shell, file edits, local test runs).

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have searched GitHub for duplicate or related PRs and linked
them above
- [x] I have either (a) linked existing issues with `Fixes: #` / `Closes
#` / `Refs #` OR (b) described the issue in-PR following the relevant
issue template
- [x] I have not referenced internal/instance-local Paperclip issues or
links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip`
URLs)
- [x] My branch name describes the change (e.g. `docs/...`, `fix/...`)
and contains no internal Paperclip ticket id or instance-derived details
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [x] All Paperclip CI gates are green
- [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups
- [x] I will address all Greptile and reviewer comments before
requesting merge

🤖 Generated with [Claude Code](https://claude.com/claude-code)

---------

Co-authored-by: Claude Opus 5.5 <noreply@anthropic.com>
2026-11-06 07:19:09 -08:00
DottaandPaperclip 06c0566a08 fix: make task Retry work after a refused automatic attempt (#19466)
## Thinking Path

> - Paperclip is the open source app people use to manage AI agents for
work.
> - Task Retry stores a durable request before it starts a new run.
> - An automatic attempt can stop at the execution gate before a
provider starts.
> - That cancelled attempt becomes the source of the next Retry click.
> - Admission rejected that source, or chose an older run that did not
match the stored Retry authority.
> - This pull request verifies the refused attempt and keeps it as the
exact authority source.
> - The user can start one new turn after the older execution holds pass
their existing checks.

## Linked Issues or Issue Description

**What happened?**

Retry can remain deferred when the latest run was cancelled with
`execution_reconciliation_required` before dispatch. An older failed
preparation has an execution recovery hold. The Retry receipt names the
cancelled child, but admission only accepts a failed preparation as an
extra source. It can also choose the older run as `previousRunId`, which
fails the exact source check at dispatch.

**Expected behavior**

Retry starts one new turn when the latest attempt has a verified
pre-dispatch refusal and every older execution hold is ready. Provider
activity, retained execution resources, missing receipts, or a live
earlier process keep the hold.

**Steps to reproduce**

1. Seed a failed native preparation and its recovery hold.
2. Let a later automatic attempt be cancelled by the stale queued
execution gate before dispatch.
3. Click Retry against that latest cancelled attempt.
4. Before this change, continuation admission returns no receipt. After
this change, one successor starts with authority bound to the clicked
attempt.

**Paperclip version or commit**

Reproduced on `2f35eb1080`. Rebased onto `6cafcaf89b` for submission.

**Deployment mode**

Local source checkout with embedded PostgreSQL and the native Runner on
macOS arm64.

Refs #15383 and #16939. Those changes cover legacy conversation
cancellation and queue promotion. This change covers the exact source of
a task Retry receipt after a gate refused its automatic child.

## What Changed

- Reuse the existing database-backed pre-dispatch refusal proof when
admitting the exact Retry source.
- Keep the clicked source as `previousRunId`. Continue to check every
older execution hold.
- Add database regressions for safe refusal, unsafe evidence, concurrent
dispatch, and duplicate clicks.
- Add an opt-in acceptance test that drives the authenticated Retry
route through a real Codex turn and task finalization.
- Document the admission contract.

## Verification

- TDD: the new database regression returned `null` on the original code.
It passes with the repair.
- Final head `c43a84b1bf`: 487 tests pass across task Retry, explicit
native continuation, and execution continuation. Server TypeScript and
module boundary checks pass.
- Live acceptance: `PAPERCLIP_LIVE_REFUSED_RETRY=true
PAPERCLIP_RUNNER_BINARY=<current-source-runnerd> pnpm --dir server exec
vitest run --config vitest.config.ts
src/services/native-runtime/refused-task-retry.live.test.ts`.
- The real HTTP request returned 202 on the final rebased head
`c43a84b1bf`. Codex `gpt-6.1-sol` with high effort produced the
requested file. The task became done, both task locks cleared, and
finalization committed. A repeated click reused the same receipt and did
not create another run. The source file stayed unchanged.
- Server TypeScript check and module boundary check.
- `pnpm verify --explain` returned 2 because the execution contract doc
requires broad CI coverage. The required CI checks supply that coverage.

## Risks

This changes execution admission. The existing proof requires the stored
refusal receipt and no provider work or retained execution resources.
Earlier recovery holds, process stop checks, decisions, actor authority,
and task ownership still apply. No schema change or migration.

## Model Used

OpenAI Codex, GPT-6 family, with reasoning, tool use, and code
execution. The host does not expose an exact author model ID or context
window. The live acceptance provider was `gpt-6.1-sol` with high
reasoning effort.

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have searched GitHub for duplicate or related PRs and linked
them above
- [x] I have either (a) linked existing issues with `Fixes: #` / `Closes
#` / `Refs #` OR (b) described the issue in-PR following the relevant
issue template
- [x] I have not referenced internal/instance-local Paperclip issues or
links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip`
URLs)
- [x] My branch name describes the change (e.g. `docs/...`, `fix/...`)
and contains no internal Paperclip ticket id or instance-derived details
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [x] All Paperclip CI gates are green — all GitHub Actions checks pass
on `c43a84b1bf`; Paperclip Review completed at 5/5 with no findings
(neutral check conclusion).
- [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups —
reviewed `c43a84b1bf` with no actionable findings
- [x] I will address all Greptile and reviewer comments before
requesting merge

Co-authored-by: Paperclip <noreply@paperclip.ing>
2026-11-06 07:03:54 -08:00
DottaandPaperclip 6ec4180ea1 fix: preserve ordinary diagnostic text during environment secret redaction (#19461)
## Thinking Path

> - Paperclip is the open source app people use to manage AI agents for
work.
> - Run diagnostics help operators find the cause of a failed agent run.
> - The failure reporter treated unknown environment settings as
credentials.
> - It replaced every use of those values in diagnostic text.
> - A flag set to `1`, `2`, or `safe` removed parts of dates, model
names, versions, and normal words.
> - This pull request preserves explicit ordinary settings and keeps
unknown values private.
> - Operators can read the failure details while real credentials stay
masked.

## Linked Issues or Issue Description

**What happened?**

Run-failure contexts contained redaction markers inside timestamps,
model names, driver versions, and the word "safely". Provider failure
diagnostics used the same broad environment-value rule.

**Expected behavior**

Ordinary flags, counts, paths, regions, and mode labels leave diagnostic
text readable. API keys, URL passwords, and declared secret bindings
remain masked.

**Steps to reproduce**

1. Set ordinary environment settings to `1`, `2`, and `safe`.
2. Report a failed native run with a timestamp, `gpt-6.1-sol`,
`phase6-v2`, and "safely" in its details.
3. Inspect the run failure report. Before this fix, unrelated fragments
are replaced.

Related work: #13668 addresses a separate model-ID false positive.
#11311 and #15524 address credential capture at other boundaries. This
change keeps the existing command scanner and registered-secret
replacement.

## What Changed

- Add a shared environment selector in adapter-utils. Keep unknown
values private. Exempt explicit ordinary process settings, typed flags
and counts, mode labels, and key selectors.
- Use the same selector for run-failure reports and inherited provider
failure environments. Keep one policy for both consumers.
- Keep configured provider bindings private because that API does not
carry separate secret-reference metadata.
- Preserve short declared secrets, unknown opaque values, encoded
credentials, and inherited Bedrock tokens. Add regressions for ordinary
`SORT_KEY` values and both Bedrock consumers.
- Add screenshot-shaped regressions, real database reporter coverage,
and credential tests.
- Document the policy in `doc/observability.md`. The optional monitoring
gate stays in place.

## Verification

Linux, Node v25.9.0, pnpm 9.15.4. The published tree matches the tested
local tree `cb236f072cca195e4c2cfb4034c7cc06ea7adbc5`.

- Before the fix, four diagnostic regressions failed. The output
reproduced the damaged timestamp, model, version, and word.
- Review regressions: six tests failed on the first revision. They
proved the missed Bedrock token, opaque inherited-value exposure, and
key-selector false positive. All pass after the correction.
- 555 focused tests pass on the final source tree.
- `cd server && pnpm exec vitest run
src/services/__tests__/run-failure-diagnostics.test.ts
src/__tests__/redaction.test.ts src/__tests__/redact-sensitive.test.ts
src/__tests__/run-secret-redaction.test.ts`: 206 passed.
- `cd server && pnpm exec vitest run
src/services/__tests__/run-failure-report.test.ts`: 289 passed, with
real embedded PostgreSQL.
- `pnpm exec vitest run
packages/adapter-utils/src/command-redaction.test.ts
packages/adapter-utils/src/acpx-engine/terminal-session-failure.test.ts`:
60 passed.
- `pnpm --filter @paperclipai/adapter-utils typecheck`: passed.
- `git diff --check`: passed.
- The first reporter attempt could not load the unbuilt plugin SDK. It
passed after `pnpm --filter @paperclipai/plugin-sdk ensure-build-deps`.
- The filtered install omitted the CLI tsx loader, so `pnpm verify
--explain` could not start. The equivalent verifier entry points ran
with the installed server loader and returned exit 2: broader CI
coverage is required for the observability document.
- Full local build/typecheck and browser suites were not duplicated.
[Final-revision
CI](https://github.com/paperclipai/paperclip/actions/runs/42231412547)
passed on `013960a4c6fa6279e1f28b0f6af5f036d7cad5a7`, attempt 1. This
includes typecheck, build, general/server/chat tests, serialized suites,
Runner checks, eight E2E shards, and the canary dry run.
- [Greptile
review](https://github.com/paperclipai/paperclip/pull/19461#issuecomment-6686592783)
scored this head 5/5 with zero new findings. All four inline threads are
resolved. The security rescan and Snyk status passed. The PR has no
merge conflicts.

## Risks

- Ordinary-setting exemptions need a known name or a name/value type
rule. Unknown opaque values remain private. Declared secret bindings and
recognizable credentials override these exemptions.
- A real short secret still masks matching fragments. Removing that
protection would expose the secret.
- Existing stored redaction markers cannot restore their original text.
This fix applies when new diagnostics are produced.
- No migration, dependency, workflow, authorization, or default
monitoring changes.

> For core feature work, check [`ROADMAP.md`](ROADMAP.md) first and
discuss it in `#dev` before opening the PR. This change is a focused bug
fix.

## Model Used

OpenAI GPT-6, through Codex, with shell execution and file tools. The
host does not expose the exact runtime variant or context window size.

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have searched GitHub for duplicate or related PRs and linked
them above
- [x] I have either (a) linked existing issues with `Fixes: #` / `Closes
#` / `Refs #` OR (b) described the issue in-PR following the relevant
issue template
- [x] I have not referenced internal/instance-local Paperclip issues or
links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip`
URLs)
- [x] My branch name describes the change (e.g. `docs/...`, `fix/...`)
and contains no internal Paperclip ticket id or instance-derived details
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [x] All Paperclip CI gates are green
- [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups
- [x] I will address all Greptile and reviewer comments before
requesting merge

---------

Co-authored-by: Paperclip <noreply@paperclip.ing>
2026-11-06 09:01:55 -06:00
DottaandClaude Opus 5.5 d87f6fa4c2 test(runner-e2e): add staging-soak reliability cases to everyday workflows (#19455)
## Thinking Path

> - Paperclip is the open source app people use to manage AI agents for
work
> - The paid runner E2E suite (`tests/runner-e2e`) drives the real
browser, server, native runner, provider and Daytona
> - A manual staging soak found about nine reliability bugs (S47–S55,
H2, U9). Each fix got unit or integration tests
> - The end-to-end journeys that exposed the bugs existed only as ad-hoc
browser scripts, so a regression could return without a signal
> - These journeys are expensive, so they must not run per PR or in
`--all`. They must run on demand before a release
> - This pull request adds the journeys to the existing
`everyday-workflows` suite as an explicit `reliability` group
> - The benefit is one command that runs the whole reliability set
before a release or after a risky runner change

## Linked Issues or Issue Description

**What is the problem?**
The staging-soak scenarios that found S47–S55, H2 and U9 are not
repeatable. They were ad-hoc browser scripts on staging.

**Why does it matter?**
Without a repeatable end-to-end case, a reliability regression (stalled
follow-ups, duplicate execution, dead Retry, hangs after silent
commands) can return without a signal.

**What is the proposed solution?**
Add the scenarios to the paid `everyday-workflows` suite as
explicit-only cases with independent graders and a selectable
`reliability` group.

Refs #19370, #19355, #19354, #19407, #19419, #19394, #19421, #19431 (the
related fixes).

## What Changed

- `everyday-reliability-cases.ts`: seven new cases
(`interrupt-redirect`, `reassign-midrun`, `three-turn-revise`,
`long-silent-command`, `tree-pause-release`, `queue-steer`,
`queued-across-restart`), their soak signatures, prompts, bounds and the
explicit matrix.
- `everyday-reliability-flow.ts`: browser and public-API drivers for
each journey. A shared watcher records `executionBlocker`,
`interruption` and execution projections while it waits. It uses an
offered Retry at most once (never while an automatic retry is
scheduled).
- `everyday-reliability.ts`: pure graders. They encode the product rule:
interrupted work resumes automatically or offers a Retry that works on
first use. A send-a-message blocker, a dead or repeated Retry, a silent
stall, or duplicate execution fails.
- `types.ts` / `selectors.ts`: new optional `explicitGroup` on a task.
Such a task is selected only by its group, `--case`, or an exact `--id`.
`--all`, the plain suite and generic selectors skip it. `--list` still
shows it.
- `catalog.ts`: the suite gets the reliability tasks, the released
Grok/Kimi/Pi facades (only for `long-silent-command`), a per-turn
Daytona override for `three-turn-revise`, the `reliability` and `slow`
groups, definition version 11, and a computed `expectedMatrixSize` (52 →
62).
- `everyday-flow.ts`: a narrow hook calls the scenario driver after task
creation. Riley is created for the reassign and tree cases. The
reliability checks are added after settlement.
- `everyday-observations.ts`: an allowed interrupted run may end
`operator_interrupted` or `issue_reassigned`. Lifecycle checks accept a
declared reassigned parent owner.
- `live-fixtures.ts`: reliability cells get the existing 1,000-cent
company and lead-agent hard stop.
- Tests: new `everyday-reliability.test.ts` (selection exclusion,
matrix, credentials, and calibrated pass/fail cases for every grader).
Updated counts in `catalog.test.ts`, `everyday.test.ts` and
`installed-cli.test.ts`.
- Docs: new "Staging-soak reliability group" section in
`EVERYDAY-WORKFLOWS.md` (cases, signatures, run commands, cadence,
coverage boundary) and a link from `doc/evals.md`.

`everyday-flow.ts` was already over 1,000 lines. This PR adds only about
20 lines of wiring there. The scenario logic is in the new modules.

Matrix (10 cells, all Daytona, single attempt): one `runner-codex`
(gpt-5.6-sol) cell per case, plus `runner-acpx-grok`, `runner-acpx-kimi`
and `runner-acpx-pi` for `long-silent-command`.

Run command:

```sh
pnpm test:e2e:runner -- --suite everyday-workflows --group reliability --max-parallel 2
```

## Verification

- `pnpm test:e2e:runner:typecheck` passes.
- `node node_modules/vitest/vitest.mjs run --config
tests/runner-e2e/vitest.config.ts everyday catalog installed-cli
selectors support.test`: 15 files, 362 tests pass.
- The full runner-e2e Vitest run has the same 14 failures with and
without this change (`controller-outage`, `operating-receipts`,
`pi-controls-evidence`, `pi-file-evidence`, `workflow-security`). These
fail on the base commit in this local environment too.
- `pnpm test:e2e:runner -- --list --suite everyday-workflows --group
reliability` lists exactly the ten cells.
- `--all`, `--suite everyday-workflows` (still 52 cells),
profile/environment selectors and the daily/weekly scheduled selections
contain no reliability cell. A test asserts this.
- Not run: the paid cells. They need provider and Daytona credentials.
The first paid run of the group is the acceptance step.

## Risks

- The drivers have not run against a live stack. A first paid run can
expose harness timing or selector issues (for example, how fast the
queued Interrupt control appears). The failure then names the stalled
step and keeps `reliability-observations.json`.
- `long-silent-command` does not inject a runner connection loss. The
named-cause contract is checked only if a loss happens naturally.
- The Grok/Kimi/Pi facades run as ordinary released profiles. If one
returns to pending qualification, it drops out of the group and the
matrix size follows.
- No product code changes. Existing everyday cells keep their selection
and checks. The suite definition hash changes because the suite
definition changed.

> For core feature work, check [`ROADMAP.md`](ROADMAP.md) first and
discuss it in `#dev` before opening the PR. Feature PRs that overlap
with planned core work may need to be redirected — check the roadmap
first. See `CONTRIBUTING.md`.

## Model Used

- Claude Opus 5.5 (`claude-opus-5-5`), Anthropic, via Claude Code with
tool use (shell, file edit, code execution). Standard context window.

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have searched GitHub for duplicate or related PRs and linked
them above
- [x] I have either (a) linked existing issues with `Fixes: #` / `Closes
#` / `Refs #` OR (b) described the issue in-PR following the relevant
issue template
- [x] I have not referenced internal/instance-local Paperclip issues or
links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip`
URLs)
- [x] My branch name describes the change (e.g. `docs/...`, `fix/...`)
and contains no internal Paperclip ticket id or instance-derived details
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [ ] All Paperclip CI gates are green
- [ ] Greptile is 5/5 with no open P2s, recommendations, or follow-ups
- [x] I will address all Greptile and reviewer comments before
requesting merge

🤖 Generated with [Claude Code](https://claude.com/claude-code)

---------

Co-authored-by: Claude Opus 5.5 <noreply@anthropic.com>
2026-11-06 08:37:22 -06:00
DottaandPaperclip 6cafcaf89b fix(workspaces): recover unpublished archived Git uploads (#19459)
## Thinking Path

> - Paperclip is the open source app people use to manage AI agents for
work.
> - Remote workspace imports preserve existing files before the server
changes workspace authority.
> - Archived Git imports reconstruct saved files and Git state in a
private repository.
> - A failed upload can leave a pending snapshot journal with no object
in storage.
> - A later reconstruction can have different Git administrative bytes
for the same saved logical source.
> - This pull request lets that import record a new unpublished capture
after it proves that prior objects are absent.
> - The benefit is safe retry through the original import journal while
source checks and atomic publication remain in place.

## Linked Issues or Issue Description

Refs #19396. Refs #19409.

A snapshot upload can fail before object persistence. The caller then
removes its private archive. A retry reconstructs the same saved Git
workspace. If its administrative bytes differ, the snapshot owner
rejects the retry with
`remote_workspace_snapshot_operation_content_changed`. The pending
journal remains blocked even though no snapshot object or remote
authority was published.

## What Changed

- Add an optional unpublished recapture capability to snapshot storage.
Bind it to the original source operation. Existing callers keep the
exact manifest check.
- Enable this capability only for archived Git reconstruction. The
migration owner keeps the source recipe, task binding, ownership, and
publication checks.
- Verify every prior object before new capture admission. Unknown or
corrupt objects stop the retry. Reuse an available prior object,
including an object that appears while the replacement upload runs.
- Compare the observed upload journal under the snapshot row lock before
appending an attempt. Keep network I/O outside that lock. Preserve all
prior attempt metadata.
- Keep the first atomic publication as the winner. A losing uploader
verifies and returns that saved reference.
- Add real PostgreSQL, filesystem, and Git regression tests. Document
the retry behavior.

## Verification

- Baseline `70d23612dd9176cae8ee6b2b6dcf2f6eade9a42a`: the new real Git
fixture fails with
`remote_workspace_snapshot_operation_content_changed`. It fails the
first upload before persistence, removes the old source cache, and
advances unrelated remote refs. The saved task commit and restore point
stay fixed.
- Final frozen source: 20 tests pass in a fresh process. This includes
the real Git regression and all snapshot storage cases. Tests cover
prior object recovery, corrupt and unknown objects, normal caller
mismatch rejection, operation binding, stale journal admission, and late
upload publication in both orders.
- Reproduce the final focused check from `server/`:

  ```sh
node ../node_modules/vitest/vitest.mjs run --config vitest.config.ts
src/services/remote-workspace-snapshot-storage.test.ts
src/services/remote-workspace-migration.test.ts -t
'failed-upload-retry|snapshot storage' --reporter=dot
  ```

- An earlier six-suite run had 201 passing cases and one failing
late-object case. That run started before the final prior-object recheck
was added. The failing case passes in the fresh final run above. This
earlier run is not a clean full-family result for the final source.
- That run skipped 16 lifecycle cases because
`PAPERCLIP_REMOTE_WORKSPACE_LIFECYCLE_TEST_DATABASE_URL` was unset.
Migration, storage, reservation, and concurrency tests used real
disposable embedded PostgreSQL.
- `git diff --check` passes. Full repository typecheck passed before
rebasing. Full test, build, and current-head CI results are pending.

## Risks

- The optional capability permits different physical captures. The
migration owner must prove that the logical source and current ownership
are unchanged. Ordinary mutable workspace uploads keep the previous
mismatch guard.
- An old upload can complete after the last object check. The first
authenticated atomic publication wins. A late upload cannot replace its
object or snapshot reference. Every candidate remains in the retention
journal.
- Unknown storage results and journal changes fail closed. They can
require another canonical retry. This change adds no retry loop and
changes no database schema.

## Model Used

OpenAI Codex, GPT-6 family. The worker used reasoning, tool use, code
editing, and local test execution. The worker runtime did not expose an
exact model ID or context window.

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have searched GitHub for duplicate or related PRs and linked
them above
- [x] I have either (a) linked existing issues with `Fixes: #` / `Closes
#` / `Refs #` OR (b) described the issue in-PR following the relevant
issue template
- [x] I have not referenced internal/instance-local Paperclip issues or
links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip`
URLs)
- [x] My branch name describes the change (e.g. `docs/...`, `fix/...`)
and contains no internal Paperclip ticket id or instance-derived details
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [ ] All Paperclip CI gates are green
- [ ] Greptile is 5/5 with no open P2s, recommendations, or follow-ups
- [x] I will address all Greptile and reviewer comments before
requesting merge

Co-authored-by: Paperclip <noreply@paperclip.ing>
2026-11-06 08:04:35 -06:00
DottaandPaperclip 4696ff4990 fix: reserve agent In Progress display for active runs (#19453)
## Thinking Path

> - Paperclip is the open source app people use to manage AI agents for
work.
> - Task status must tell operators whether an agent is working or
waiting.
> - A task can retain its in-progress lifecycle status after its run
stops.
> - The shared read projection only handled scheduled monitoring waits.
> - The UI also ignored other projected statuses for in-progress tasks.
> - This pull request requires an active task run for the In Progress
display.
> - Operators can see waits without changing execution or recovery
authority.

## Linked Issues or Issue Description

**What happened?**

An agent task still showed In Progress after its run ended with an
access failure and left a pending connection request. Stale execution
locks and saved lifecycle state could show the same false activity.

**Expected behavior**

An agent task shows In Progress only with a task-linked queued or
running run. Otherwise, it shows Blocked for recovery, In Review for a
pending response or review, Monitoring for a scheduled check, or Todo
for remaining work. Human ownership keeps its selected status.

**Steps to reproduce**

1. Create an agent-owned task with an in-progress lifecycle status.
2. End its run and retain a pending human request.
3. Read the task, its summary, and search results. Before this change,
they still show In Progress.

## What Changed

- Derive visible activity from company-scoped, task-linked runs in the
existing shared SQL projection.
- Project inactive tasks to existing waiting or todo states. Preserve
lifecycle status, locks, admission, and recovery.
- Make the shared UI resolver use the projection while preserving
explicit and optimistic status changes.
- Cover stopped runs, stale locks, human waits, company isolation,
monitoring, filters, counts, search, and UI labels.
- Document the presentation rule in the product and execution contracts.

## Verification

- Red before the server fix: 7 new regression cases failed because they
returned in_progress. The 10 existing cases passed.
- Green after the server fix: 20 cases passed in
issue-display-status.test.ts, using embedded Postgres and real task
APIs/search. Seven nearby active-question cases also passed.
- Review regression: dismissed requests, historical questions, and
returned review work each failed before the follow-up fix. All three now
pass using the existing active-interaction rule and pending review
state.
- Red before the UI fix: 4 label cases failed. Five additional safety
cases caught stale projections hiding explicit transitions.
- Green after the UI fix: 43 tests passed across
task-status-presentation, issue-filters, and issue-detail-subissues.
- pnpm -r typecheck passed. All UI token gates and synchronization
checks passed.
- pnpm build passed. Server typecheck and build passed again after the
review fixes.
- Full CI passed on 45c4ababc5, including
typecheck, build, general/serialized tests, Runner tests, and browser
checks. The final rollup has 55 successful checks, one neutral check,
and three configured skips.
- The local pnpm test:run command passed all 1,931 chat integration
tests. Its remaining duplicate full-suite run was stopped once full CI
passed on the same commit. This is not a claim that the complete local
command finished.
- Greptile reviewed the final commit at 5/5. Both prior findings have
regression coverage and all review threads are resolved.
- Live acceptance at commit 45c4ababc5: started a fresh isolated local
instance, created an inactive agent task, and saved a pending human
request. API reads changed from Todo to In Review. An initial readiness
probe ran before startup finished; the doctor then verified the exact
serving revision before acceptance. Chrome showed In Review in the task
header, breadcrumb, and sidebar. Stored lifecycle status remained
in_progress. The instance was stopped after verification.
- The reported stopped state was inspected in the live UI. The fix is
not deployed there. Local API tests reproduce the failure shape without
replaying the real deployment task.

## Risks

- This changes visible status and display-status filter membership for
inactive agent tasks. Stored lifecycle filters keep their existing
meaning.
- The projection uses existing indexes on task runs, recovery actions,
and interactions. It adds no worker, timer, schema change, or execution
action.
- A queued run counts as active admission. Human-owned tasks retain
explicit ownership status.

## Model Used

- OpenAI GPT-6 through Codex, with reasoning, repository tools, and code
execution. A more specific model ID and context-window size are not
exposed in this session.

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have searched GitHub for duplicate or related PRs and linked
them above
- [x] I have either (a) linked existing issues with `Fixes: #` / `Closes
#` / `Refs #` OR (b) described the issue in-PR following the relevant
issue template
- [x] I have not referenced internal/instance-local Paperclip issues or
links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip`
URLs)
- [x] My branch name describes the change (e.g. `docs/...`, `fix/...`)
and contains no internal Paperclip ticket id or instance-derived details
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [x] All Paperclip CI gates are green
- [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups
- [x] I will address all Greptile and reviewer comments before
requesting merge

---------

Co-authored-by: Paperclip <noreply@paperclip.ing>
2026-11-06 07:59:38 -06:00
DottaandPaperclip 2f35eb1080 feat(dev): add incremental local verification and pass reuse (#19345)
## Thinking Path

> - Paperclip coordinates agents that make and verify repository
changes.
> - Local verification currently defaults to the complete Vitest suite.
> - Contributor instructions also require broad local checks at each PR
handoff.
> - CI already owns conservative affected-test selection and broad
final-revision checks.
> - This pull request adds local selection and pass reuse from those
existing contracts.
> - Agents can get focused feedback and use CI to close the remaining
coverage gaps.

## Linked Issues or Issue Description

**Subsystem affected**

Developer verification scripts and contributor guidance. Related
selection work: #18398 and #18464.

**Problem or motivation**

An agent that repeats an unchanged local verification step starts the
complete suite again. The handoff guidance also duplicates broad CI
coverage locally.

**Proposed solution**

Add `pnpm verify` for the actual working tree. Select affected Vitest
specifications with the CI task policy and dependency graph. Reuse
successful checks whose inputs are modeled. Run opaque checks fresh.
Report exit 2 when broader verification is required. Update the
contributor contract to accept applicable final-revision CI coverage.

**Alternatives considered**

Plain `vitest related` omits filesystem and opaque dependencies.
Commit-only cache keys miss dirty files. Running full local suites at
every handoff repeats CI work.

**Roadmap alignment**

This is repository development tooling. It does not change the product
roadmap.

## What Changed

- Add `pnpm verify`, `--explain`, `--base`, `--full`, and `--no-cache`.
- Reuse CI selection and exact runner ownership for dirty, staged,
committed, deleted, renamed, and untracked inputs.
- Keep native server suites and serialized suites in their local owners.
Keep six sequential chat shards.
- Cache selected passes within one worktree. Hash source, fixtures,
installed package contents, dependency bindings and installation
metadata, dotenv files, child environment, toolchains, platform, and
selection.
- Run opaque consumers fresh. Preserve failed, interrupted,
mutated-input, and partial-coverage outcomes.
- Update AGENTS.md, CONTRIBUTING.md, and DEVELOPING.md guidance. Record
the shared `verify` command as the sole exception to the package-script
rule. Register the new tests in the existing CI contract-test command.
- Add optional root/environment inputs to shared graph helpers. Existing
CI defaults stay the same.

## Verification

- Fourteen new integration tests pass locally across focused runs with
real Vitest selection and execution; CI colors are covered.
- 51 existing targeted selector/input, project-isolation, and
stable-runner checks passed. Four relevant runner contracts also pass
after the workspace change.
- Repeated unchanged execution skips reusable tests. Source,
environment, installed code, dependency bindings, and new untracked
tests invalidate results.
- Installed-code mutation with a restored modification time still
invalidates a cached pass. Internal skill-directory links preserve
reuse.
- Workspace B/C tests prove discovery, reusable/fresh partition
execution, pass reuse, and external-input failure. Chat selection
produces exactly six single-worker partitions.
- A deliberate unrelated failing test is omitted by narrow selection and
caught by `--full`.
- Red/green regressions prove fingerprints preserve file boundaries and
reject edits made between diff discovery and snapshotting.
- Opaque external-file changes still fail on a subsequent run. Source
mutation and process interruption cannot publish reusable passes.
- `pnpm verify --explain` works in the checkout and requests broad CI
coverage for this tooling change. No duplicate full local suite was
started.
- [Final-revision
CI](https://github.com/paperclipai/paperclip/actions/runs/42117291789)
passed on `ed85d96ddff82c05c325948680b593b0f48c473d` (attempt 2). The
scoped Canary retry preserved all passing test/build results.
- [Greptile
review](https://github.com/paperclipai/paperclip/pull/19345#issuecomment-6670050175)
is 5/5; all four review threads are resolved.
- The additional Paperclip review concluded neutral because its
execution stopped; it produced no assessment.

## Risks

- Pass reuse depends on conservative dependency classification. Opaque
consumers, external database/live settings, and non-isolated projects
retain fresh or broad coverage.
- Local passes cover selected Vitest checks. Required CI,
build/typecheck, release, browser, and platform acceptance remain
separate obligations.
- Cross-worktree caching and cross-agent scheduling are outside this
change.
- The initial installation scan reads dependency contents;
stat-validated, worktree-local digest memoization avoids rereading
unchanged contents. Subsequent scans still inspect file identity and
nanosecond change/modification times.
- No dependency lockfile or workflow changes.

## Model Used

OpenAI Codex, `gpt-6.1-sol`, max reasoning, with local shell and file
tools. Context window size is not exposed by this host.

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have searched GitHub for duplicate or related PRs and linked
them above
- [x] I have either (a) linked existing issues with `Fixes: #` / `Closes
#` / `Refs #` OR (b) described the issue in-PR following the relevant
issue template
- [x] I have not referenced internal/instance-local Paperclip issues or
links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip`
URLs)
- [x] My branch name describes the change (e.g. `docs/...`, `fix/...`)
and contains no internal Paperclip ticket id or instance-derived details
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [x] All Paperclip CI gates are green
- [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups
- [x] I will address all Greptile and reviewer comments before
requesting merge

---------

Co-authored-by: Paperclip <noreply@paperclip.ing>
2026-11-06 07:29:10 -06:00
DottaandPaperclip 70d23612dd fix: offer Interrupt when queued-message steering is unavailable (#19450)
## Thinking Path

> - Paperclip lets people manage work performed by AI agents.
> - Task chat saves follow-up messages while an agent runs.
> - A native runner can accept Steer only after an active provider turn
exists.
> - During preparation, or with an unsupported provider, the queue
showed a disabled Steer button and no delivery action.
> - The server also rejected Interrupt for ordinary native queues.
> - This change offers an explicit Interrupt fallback and uses the
existing cancellation and admission path.
> - People can send their saved messages while Stop confirmation,
cleanup, and execution gates remain enforced.

## Linked Issues or Issue Description

Related: #15865 covers mixed legacy queues. #15030 covers steering
acknowledgements. This change covers native queues without available
steering.

**What happened?**

A queued message had a disabled Steer button while the native runner was
still preparing. Clicking it did nothing. The server returned HTTP 409
for an explicit Interrupt request against the same native queue.

**Expected behavior**

Offer Steer when the provider can accept same-turn input. Otherwise
offer Interrupt, labeled with its actual effect. Preserve saved messages
until the previous execution stops and normal admission accepts the
successor.

**Steps to reproduce**

1. Start a task with the Paperclip Runner adapter.
2. Submit a follow-up while the run is preparing, before its provider
turn opens.
3. Observe the disabled Steer button above the composer.
4. With this change, click Interrupt. The existing Stop path cancels the
previous execution and submits the saved queue through normal admission.

**Paperclip version or commit**

Reproduced locally on master at 523818ea9b. The branch is rebased on
2f9d3d43c3.

## What Changed

- Offer Interrupt for unavailable or unsupported native steering when
the parent supplies an interrupt callback.
- Keep Steer for an available provider turn.
- Accept explicit Interrupt for a deferred native queue and record its
run target.
- Bind native continuation to the exact Interrupt queue, run, actor, and
cancellation receipt. This lets one click send the messages after Stop
completes.
- Add component, task-thread, real PostgreSQL route, and continuation
authorization regressions.
- Close the route fixture database pool before disposing its PostgreSQL
instance.
- Document the fallback and its Stop and admission requirements.

## Verification

- Red: two component cases failed because Interrupt was absent. Two
route cases returned HTTP 409, `This queue does not support
interruption`, before the repair.
- Red: stronger delivery assertions also caught `send_predates_stop`
after the first repair. The admission fix covers both the freshness
exception and later eligibility check.
- Green: both route regressions now wait for preparation settlement,
then deliver both saved messages exactly once without a second click.
The complete route suite passes 119 tests. The complete continuation
suite passes 376 tests, including wrong actor, queue, target, and
missing-receipt cases.
- UI: task-thread and queued-message suites pass 394 tests, with one
existing skip. The issue-page suite also passes (the earlier three-suite
run passed 644 tests before the final three UI cases).
- Token gates and `git diff --check` pass.
- Full workspace build and low-memory typecheck pass. The initial
typecheck caught a missing `membershipRole` in an unrelated fixture; the
rebase picked up the correction already on master, and the complete
typecheck then passed.
- The full local `pnpm test:run` passed all six chat shards (1,931
tests). It was stopped during general-server validation after the final
commit passed all PR CI gates. The complete local suite is not claimed
as a pass.
- Earlier route-suite teardown timed out with an open database pool.
Closing that pool fixed teardown; the complete route suite then passed.
- All final-head CI gates pass: 52 successful checks and two intentional
skips. Greptile is 5/5 on the same head with no unresolved review
threads.

## Risks

Interrupt stops the previous execution and starts a successor; it is a
different action from same-turn steering. The UI labels that action
explicitly. Cleanup or execution gates can keep the messages queued.
Existing company access, board permissions, queue revision, run target,
cancellation proof, and admission checks remain in place. No schema
migration is needed.

## Model Used

OpenAI Codex (GPT-6), with reasoning, tool use, and code execution. The
exact model ID and context window are not exposed by this client.

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have searched GitHub for duplicate or related PRs and linked
them above
- [x] I have either (a) linked existing issues with `Fixes: #` / `Closes
#` / `Refs #` OR (b) described the issue in-PR following the relevant
issue template
- [x] I have not referenced internal/instance-local Paperclip issues or
links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip`
URLs)
- [x] My branch name describes the change (e.g. `docs/...`, `fix/...`)
and contains no internal Paperclip ticket id or instance-derived details
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [x] All Paperclip CI gates are green
- [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups
- [x] I will address all Greptile and reviewer comments before
requesting merge

---------

Co-authored-by: Paperclip <noreply@paperclip.ing>
2026-11-06 07:11:38 -06:00
DottaandPaperclip 275b334fc5 fix(workspaces): skip redundant repository admission snapshots (#19444)
## Thinking Path

> - Paperclip manages AI agents and their execution state.
> - Remote workspace admission must preserve files before execution
starts.
> - Admission saved the entire workspace once per registered repository
on every run.
> - Existing snapshot receipts can prove that validated repositories are
already saved.
> - This change uses those receipts and saves new repositories once per
admission batch.
> - It also preserves fresh configuration metadata and reports actual
workspace reuse.

## Linked Issues or Issue Description

**What happened**
Remote follow-up runs uploaded an unchanged workspace for each
registered repository before starting the provider. Configuration
persistence also overwrote new evaluation metadata, and freshness logs
could claim replacement when the same workspace was reused.

**Expected behavior**
Validate existing repositories without uploads when a committed snapshot
covers their descriptors. Save acquired repositories before publishing
ready receipts. Retain current evaluation metadata and report the actual
workspace outcome.

**Steps to reproduce**
Use a remote workspace with two registered repositories. Prepare it,
then admit a follow-up run. Observe repository snapshot operations
despite unchanged repositories. The regression tests exercise this with
real Postgres, Git, and separate sandbox directories.

**Environment**
Server remote workspace admission at commit
c0214826b3. Related work: #19374 handles
interrupted clone staging; this change handles snapshot admission cost.

## What Changed

- Skip repository saves when the committed snapshot covers the validated
descriptor.
- Save all repositories in one admission snapshot before publishing
ready receipts.
- Retain descriptor coverage only when the new archive contains the
checkout. Drop deleted checkout coverage so admission can acquire it
again.
- Restore `needs_repair` status for failed batch saves and retry failed
uploads.
- Let fresh preparation metadata override stale reserved metadata while
preserving storage authority.
- Report actual reuse when freshness policy requested replacement.
- Add regression coverage and fix an existing routine user fixture
missing its membership role.

## Verification

- Red: original code fails unnecessary-snapshot, evaluation-metadata,
and reuse-message regressions.
- Green: 517 affected tests across six suites before the final coverage
correction. After that correction, all 102 remote workspace/concurrency
tests and 96 archive tests pass. Imported-repository, deleted-checkout,
and upload-retry cases pass.
- Additional red/green: deleted checkout coverage fails before the fix
and passes after it. All 96 archive tests pass, including manifest
digest and size bounds.
- `pnpm -r typecheck`, `pnpm build`, and `pnpm check:token-gates` pass
locally.
- All final-head CI verification jobs pass, including the aggregate `ci
/ verify` check. Greptile gives the final head 5/5.
- The monolithic local `pnpm test:run` passed all six chat shards and
continued through general server tests. It was stopped after final-head
CI passed; it did not complete locally. The targeted local regressions,
affected suites, typecheck, and build completed successfully.

## Risks

Snapshot receipts must refer to committed bytes. Legacy receipts require
one conservative save. Failed uploads must not publish repository
readiness. Replacement-class drift still retains the original
configuration for an explicitly reused workspace.

Existing directories with damaged or missing Git metadata still require
repair. Master and this PR both validate those directories without
cloning over them, preserving any surviving user files. Clearing a
snapshot descriptor would not change that path. Complete directory
deletion is different: this PR clears coverage so normal acquisition can
clone it again.

## Model Used

OpenAI gpt-6.1-sol through Codex. Used reasoning, repository inspection,
code editing, and local execution. The host does not expose the context
window size.

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have searched GitHub for duplicate or related PRs and linked
them above
- [x] I have either (a) linked existing issues with `Fixes: #` / `Closes
#` / `Refs #` OR (b) described the issue in-PR following the relevant
issue template
- [x] I have not referenced internal/instance-local Paperclip issues or
links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip`
URLs)
- [x] My branch name describes the change (e.g. `docs/...`, `fix/...`)
and contains no internal Paperclip ticket id or instance-derived details
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [x] All Paperclip CI gates are green
- [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups
- [x] I will address all Greptile and reviewer comments before
requesting merge

---------

Co-authored-by: Paperclip <noreply@paperclip.ing>
2026-11-06 07:08:59 -06:00
DottaandPaperclip c0214826b3 fix(workspaces): preserve pending repository requests during import (#19439)
## Thinking Path

> - Paperclip manages agent work and its saved files.
> - An ephemeral web server needs remote workspace authority before the
old volume can detach.
> - A task can have a repository request that has never prepared a
checkout.
> - The offline importer currently treats that pending request as
unfinished file publication.
> - This blocks migration even when the target does not exist and there
is no saved commit, branch or failure.
> - This pull request preserves that request in the database and imports
the existing files separately.
> - The next authorized sandbox preparation can acquire the repository
through its existing owner.

## Linked Issues or Issue Description

**What happened?**

On Core `253bf071f0a496554b61fff897ad3f11afaf8766`, offline migration of
a volume-backed workspace fails with `repository_preparation_unresolved`
for an untouched pending repository request. The requested directory has
never existed. The request has no pinned commit, branch or failure.

**Expected behavior**

Preserve the pending request and all existing files. Do not label the
absent checkout as part of a saved archive. Keep partial publication and
active preparation blocked.

**Steps to reproduce**

Create a local task workspace. Add an unmaterialized pending repository
request. Run the canonical offline importer after stopping writers. The
unchanged importer rejects the request before preserving the workspace.

Related migration work: #19429. A GitHub search found no duplicate
pending-repository import fix or matching public issue.

## What Changed

- Admit an untouched pending request only at the existing offline writer
fence and after proving its target is absent.
- Keep the database request unchanged and exclude it from materialized
snapshot descriptors.
- Recheck file absence and source identity before publication. Reject a
request that becomes ready during capture.
- Cover cold filesystem loss, real sandbox-side Git acquisition, and
eleven blocked states. Document the preservation contract.

## Verification

- Red: the new real PostgreSQL/filesystem regression fails on the
unchanged importer with `repository_preparation_unresolved`.
- Green: both affected migration/lifecycle suites pass, **236 tests**.
The cold test deletes the predecessor directory, restores saved bytes,
and acquires the pending repository through the full admission owner,
checking ready state and the pinned commit. Real Git runs against a
local HTTP origin through an exact-URL redirect at the sandbox transport
boundary. It does not claim live Daytona or GitHub qualification.
- Full workspace typecheck and build pass at the final head. Both
affected suites pass **236 tests**, including the full admission owner
and eleven blocked states. All final-head CI checks pass: **54 success,
2 skipped, 1 neutral**. Greptile is **5/5**, with no unresolved review
threads.
- The full local test command failed in `recovers lost inline and check
responses without duplicate GitHub publications` in the chat integration
suite. That exact case passes in a fresh isolated invocation. Its cause
remains unclassified; this is not a full-local-suite pass claim. The
original failure is retained alongside the isolated result.
- No candidate code has been applied to the serving instance.

## Risks

- The exception applies only to offline migration and a pending request
with no target, commit, branch or failure. Unreadable paths, symlinks,
partial directories and active/repair states retain their blockers.
- Requests retain normal repository authorization and acquisition
behavior. This change neither fetches repositories during migration nor
marks requests ready.
- A changed materialized source aborts publication and leaves original
files intact.

## Model Used

OpenAI GPT-6 through Codex, with reasoning and tool use. The exact
deployment variant and context-window size are not exposed in this
session.

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have searched GitHub for duplicate or related PRs and linked
them above
- [x] I have either (a) linked existing issues with `Fixes: #` / `Closes
#` / `Refs #` OR (b) described the issue in-PR following the relevant
issue template
- [x] I have not referenced internal/instance-local Paperclip issues or
links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip`
URLs)
- [x] My branch name describes the change (e.g. `docs/...`, `fix/...`)
and contains no internal Paperclip ticket id or instance-derived details
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [x] All Paperclip CI gates are green
- [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups
- [x] I will address all Greptile and reviewer comments before
requesting merge

---------

Co-authored-by: Paperclip <noreply@paperclip.ing>
2026-11-06 05:49:16 -06:00
DottaandPaperclip 21d2a577bb feat: show and change routine responsible users (#19128)
## Thinking Path

> - Paperclip helps people manage AI agents and their work.
> - Routines create tasks for repeated work.
> - Each routine has a responsible person.
> - The Overview did not show this person or permit a change.
> - People need to see who will be responsible for automatic tasks.
> - This pull request adds a small name picker beside Default agent.
> - Authorized people can adopt a routine or transfer it to an active
company member.

## Linked Issues or Issue Description

**What existing behavior does this improve?**

The routine Overview and the routine update API.

**Subsystem affected**

UI, server, and shared contracts.

**Current behavior**

The routine stores a responsible user. The Overview does not show that
person. The update API cannot change that person.

**Proposed behavior**

Show Responsible user beside Default agent. Click the name to search
active company members. Save only the new person and the current
revision ID.

**Reason and benefit**

People can see who owns future automatic tasks. An authorized person can
adopt a routine without making a new routine.

**Breaking changes**

The detail response adds an optional actor-specific field. The update
API adds an optional responsible user ID. Existing requests keep their
current behavior.

Related: #17368 covers local Board ownership migration. This change adds
the routine control and explicit transfer.

## What Changed

- Show a quiet, searchable person picker beside Default agent.
- Explain that automatic tasks use this person. Manual runs use the
person who starts them.
- Permit human operators with `tasks:assign`, instance administrators,
and local operators to transfer responsibility.
- Check active company membership inside the update transaction.
- Save a revision and record the old and new person in the activity log.
- Keep existing task responsibility and ownership during revision
restore.
- Show errors for failed saves and stale revisions.
- Add tests for permissions, company boundaries, transfers, inheritance,
and picker states.
- Keep the picker disabled until saved data is refreshed. Refresh the
activity list after a transfer.
- Capture the actual previous person under the update row lock for the
activity record.
- Use shared query error handling and retain cached people during a
connection failure.

## Verification

- Focused checks cover 145 tests in 5 files. The first post-fix run
passed 144 tests. One existing Fireflies route test timed out during the
first import while the UI typecheck also ran. The same test passed in
the pre-fix run. The isolated route suite then passed all 21 tests with
no source change.
- The new tests reproduce slow detail refreshes, activity refresh, and
two concurrent transfers without a base revision. The concurrency test
uses PostgreSQL row locks.
- UI and server TypeScript checks passed at commit `1df9587eb`.
- The UI production build passed for the updated head.
- The branch includes master through `26391707f`.
- Design token gates, query-error policy, and Git whitespace checks
passed. The query-error policy reports zero findings.
- Local browser checks passed on desktop and mobile for the initial
feature commit. Search, selection, reload persistence, and revision
creation passed. No page errors or horizontal overflow were found. The
follow-up does not change the normal layout.
- Earlier full local checks could not finish: Cargo was absent, and
concurrent full test/build checks exceeded the 8 GiB memory limit. These
attempts are not passes.
- The first CI run failed on two error-rendering policy findings. That
failure is fixed locally. The three findings from the first Greptile
review are fixed and their threads are resolved.
- Greptile reviewed `1df9587eb2d3e034c2769b1f6955ac52323c95bb` and
scored it 5/5. It confirms all three prior findings are addressed. There
are no open review threads.
- [CI attempt
1](https://github.com/paperclipai/paperclip/actions/runs/42046369415/attempts/1)
passed 53 checks. The server 8/12 shard failed only because the existing
`history-http` runtime fixture did not become ready within 10 seconds
(99 refused connections). The fixture and runtime source are unchanged
from the merged master. That case passed locally on the same PR head
with no source change. Its full 75-test suite also passed locally. The
cause of the CI failure remains unknown.
- [CI attempt
2](https://github.com/paperclipai/paperclip/actions/runs/42046369415/attempts/2)
passed on `1df9587eb`: 54 successful checks, 3 skipped, and 1 neutral.
No failed or pending checks remained. The original fixture-readiness
failure remains recorded above.
- A later review found that viewers with an explicit `tasks:assign`
grant could see an editable picker even though writes were denied.
Commit `8b95ee707` now mirrors active-membership and viewer restrictions
in the GET capability flag. Instance-admin and local-operator behavior
is preserved.
- Three membership regressions failed on the incorrect editable flag
before the fix. After the fix, all 43 routine-route and company-access
cases passed (`--testTimeout 60000` accommodated this sandbox's cold
route imports; no repository timeout was changed). The first pre-fix run
timed out during the cold import in one case; the second pre-fix run
reproduced all three assertion failures.
- Layered server typechecking and whitespace checks passed after the
permission fix.
- [Fresh
CI](https://github.com/paperclipai/paperclip/actions/runs/42057752313)
passed on `8b95ee7075417527687b4a86cbaf63ba87408364` without a retry.
Greptile reviewed this exact head, scored it 5/5, and added no new
findings. All four review threads are resolved. The security status is
also successful.
- The separate Paperclip Review check is still queued because its
assigned review worker requires runtime recovery. This is the remaining
check before completion; the CI workflow itself passed.

## Risks

- A transfer changes the person used for future automatic tasks.
Existing tasks keep their current person.
- Only people can transfer responsibility. The server checks the
permission again on every write.
- A stale revision rejects the save. The user must reload before
retrying.
- No database migration is required.

## Model Used

OpenAI Codex, based on GPT-6, with reasoning, tool use, and code
execution. The exact runtime model ID and context window are not exposed
to this session.

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have searched GitHub for duplicate or related PRs and linked
them above
- [x] I have either (a) linked existing issues with `Fixes: #` / `Closes
#` / `Refs #` OR (b) described the issue in-PR following the relevant
issue template
- [x] I have not referenced internal/instance-local Paperclip issues or
links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip`
URLs)
- [x] My branch name describes the change (e.g. `docs/...`, `fix/...`)
and contains no internal Paperclip ticket id or instance-derived details
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [ ] All Paperclip CI gates are green (CI passed; separate Paperclip
Review check pending)
- [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups
- [x] I will address all Greptile and reviewer comments before
requesting merge

---------

Co-authored-by: Paperclip <noreply@paperclip.ing>
2026-11-06 05:47:30 -06:00
DottaandPaperclip 253bf071f0 fix(workspaces): preserve resolved pending merges in snapshots (#19429)
## Thinking Path

> - Paperclip is the open source app people use to manage AI agents for
work.
> - Task workspaces must survive replacement of the web server.
> - Workspace snapshots therefore preserve both files and portable Git
state.
> - A resolved merge can still await its merge commit.
> - The archive rejected this state, so an existing workspace could not
migrate.
> - This pull request saves and checks the complete supported merge
state.
> - The benefit is that migration preserves the user's choice to
continue or abort the merge.

## Linked Issues or Issue Description

**What happened?**

A legacy workspace contained a resolved merge with `MERGE_HEAD`,
`MERGE_MODE`, `MERGE_MSG`, `ORIG_HEAD`, and `AUTO_MERGE`. Its index had
no unresolved entries. The snapshot owner refused the operation. This
kept the original safe but blocked migration.

**Expected behavior**

Save this supported state without changing the source. Restore it
without the original repository, borrowed object store, or linked
worktree. Retain the merge parents, selected index, later edits, and
Git's normal safety checks.

**Steps to reproduce**

1. Merge two branches that conflict.
2. Resolve and stage the conflict. Leave the merge uncommitted.
3. Capture the workspace. The base implementation rejects the merge
marker.

Related prior work: #19310 preserves an inactive rebase bookmark. No
duplicate open merge-preservation PR was found. This is a workspace
preservation fix, not a new roadmap feature.

## What Changed

- Admit only resolved pending merges with valid, bounded metadata and
available objects.
- Retain and verify the merge mode, message, parents, original head,
automatic merge tree, and index.
- Verify copied metadata and object closure before publication. Keep the
before/after source checks.
- Keep unresolved conflicts, autostash, rerere, mixed operations,
malformed state, and unsafe links blocked.
- Test real ordinary, linked, and borrowed repositories through local
and serialized capture. Delete all original sources before continuing or
aborting the restored merge.
- Document the supported state and the remaining refusal cases.

## Verification

- Six new continuation cases fail against the unchanged base at the
pending-operation guard.
- The first candidate restored and continued the merges, but six abort
assertions failed. The fixture rewrote the worktree without updating
Git's index cache. It now first verifies that abort protects later
edits, uses normal `git restore` to discard those fixture edits, then
aborts. No archive assertion was removed.
- The final archive and environment suites pass all 98 tests at
`3c87d13d1b`, including linked-metadata protections and pending merges
in ordinary, linked, borrowed, shallow, partial, and SHA-256
repositories. All 12 local/serialized continuation cases pass after
source removal.
- Full repository build and typecheck pass at `1544cc4a90`. The build
first found a nullability error; an explicit rejection return fixed it.
- The first full local test attempt stopped before tests ran because
omitted package postinstall steps left PostgreSQL library links absent.
Direct `initdb --version` reproduced the missing-library failure.
Restoring the package links made that probe pass; the full test rerun is
active.
- The initial typecheck also found missing excluded-plugin SDK links
after the same install. Running the repository postinstall link helper
corrected this, and the full typecheck now passes.
- All current-head CI gates pass at `3c87d13d1b`: 54 success, 2 skipped,
1 neutral. Fresh Greptile is 5/5 and no review threads remain open.
- Review requested shallow and SHA-256 coverage. The current commit adds
both plus partial-clone coverage; all 98 archive tests and the full
server typecheck pass.
- All six local chat shards pass. The monolithic local general-suite run
reports one viewer-permission test failure and remains active. That
exact test passes alone, and its full 505-test file also passes alone.
The original failure cause is unresolved; this is not a full local-suite
PASS. The complete current-head CI suite is green.

## Risks

- This widens capture eligibility only for the checked resolved-merge
state. No migration commits or aborts the source operation.
- A missing object or changed metadata still blocks publication and
retains the source.
- Unresolved merges and other operation formats remain unsupported.
Their preservation guard is unchanged.

## Model Used

OpenAI Codex, based on GPT-6, with reasoning, repository tools, and code
execution. The runtime does not expose a more specific serving model ID
or context-window size.

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used with the available version and
capability details
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have searched GitHub for duplicate or related PRs and linked
them above
- [x] I have described the issue in-PR following the relevant issue
template
- [x] I have not referenced internal or instance-local Paperclip issues
or links
- [x] My branch name describes the change and contains no internal task
id
- [x] I have run the affected tests locally and they pass; full-suite
limitations are recorded above
- [x] I have added or updated tests where applicable
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented the risks above
- [x] All Paperclip CI gates are green
- [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups
- [x] I will address all Greptile and reviewer comments before merge

---------

Co-authored-by: Paperclip <noreply@paperclip.ing>
2026-11-06 04:20:32 -06:00