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| Author | SHA1 | Message | Date | |
|---|---|---|---|---|
 DottaandClaude Opus 5.5
|
d8dbe55368 |
fix(workspaces): let a missing task repository ref be corrected (#19072)
## Thinking Path
> - Paperclip is the open source app people use to manage AI agents for
work
> - Agents can ask Paperclip to prepare a task repository at a specific
ref
> - Paperclip records that request and clones the repository at the next
admission
> - Paperclip did not check that the requested ref exists
> - When the ref was absent, every admission retried the same checkout
and failed setup
> - A corrected request was refused as a conflicting receipt, so the
task stayed blocked with no repair path
> - This pull request identifies a missing ref and lets a corrected
request replace it while nothing was published
> - The benefit is that a bad ref becomes a repairable error instead of
a permanent setup failure
## Linked Issues or Issue Description
**What happened?**
An agent asked for a catalog repository at ref `main`. The repository
default branch is `master` and has no `main` branch. Each later
admission failed with `setup_failed`: `git checkout main` reported
`pathspec 'main' did not match`. The task failed admission for more than
a week and became blocked. A new request with ref `master` returned 409
because the receipt with ref `main` already existed.
**Expected behavior**
Paperclip should report that the requested ref does not exist. A new
request with a valid ref should replace the bad ref when no checkout
exists.
**Steps to reproduce**
1. Use a repository whose only branch is `master`.
2. Request it as a task repository with `ref: "main"`.
3. Admit the task. Preparation fails, and the receipt goes to
`needs_repair`.
4. Request the same repository with `ref: "master"`. Before this change,
the request returns 409.
## What Changed
- `managed-repository-checkout.ts`: When `git checkout <ref>` fails with
Git's unknown-ref message, and each quiet `rev-parse --verify` probe
(`<ref>^{commit}`, `refs/remotes/origin/<ref>^{commit}`) exits 1, throw
`RepositoryRefNotFoundError`. The message tells the caller to request
the repository again with an existing branch, tag, or commit. Other
checkout failures keep their original cause.
- `execution-workspace-repositories.ts`: Record `failureCode:
"repository_ref_not_found"` for that error. Other failures keep
`repository_preparation_failed`.
- `execution-workspace-repositories.ts`: A request for the same
repository with a different ref replaces the ref only when all of these
are true: the receipt is `needs_repair` with `repository_ref_not_found`,
it has no pinned commit, the workspace is local (no remote authority),
and the checkout path is absent. The update is conditional on that state
and writes a `workspace.repository.ref_corrected` activity entry. All
other ref changes keep the existing 409 conflict.
- `execution-workspace-repositories.ts`: Local admission re-reads each
receipt inside the checkout lock and claims it with a conditional update
on its current ref. A correction that commits after the receipts were
listed is used, not discarded.
- Tests: one regression for the full missing-ref path, and one safety
test that keeps the receipt immutable when files exist at the checkout
path or when the failure was not a missing ref.
## Verification
- Red before the fix: `pnpm --filter @paperclipai/server exec vitest run
src/__tests__/task-workspace-repositories-persistence.test.ts` failed
with `expected ... /ref "main" does not exist/ but got 'Failed to
prepare managed checkout fo…'`.
- Green after the fix: the same file passes (11 tests). The new test
admits with ref `main` (fails, `repository_ref_not_found`, no checkout),
corrects to `master`, admits again (ready, pinned to the source commit),
and then confirms that a later ref change after publication still
returns a conflict.
- The regression also holds the checkout lock while admission waits,
corrects the ref, and then releases the lock. Without the in-lock
re-read it fails with 409; with it, admission publishes the corrected
ref.
- `heartbeat-managed-clone-credentials.test.ts` passes: an
authentication failure during checkout keeps its cause and is not
reported as a missing ref.
- Other checkout suites pass (9 files, 317 tests): reopen, base storage,
expiration, project env, rehome, nested clone migration, object cache,
trust, source copy privacy.
- Neighbor suites pass: `managed-repository-checkout.test.ts`,
`task-workspace-repositories.test.ts`,
`task-workspace-repositories-trust.test.ts`,
`heartbeat-project-repositories.test.ts` (47 tests). In one parallel run
under heavy machine load, `heartbeat-project-repositories.test.ts` had
timing failures in different tests on each run. The same file passed
alone with this change (47/47) and on master.
- `tsc --noEmit` for `server` passes.
## Risks
- Low risk. The new correction path is narrow and fails closed. Remote
(sandbox) workspaces keep the existing conflict because the control
plane cannot inspect the remote checkout.
- Existing receipts that failed before this change have
`repository_preparation_failed`. They need one more failed admission to
get `repository_ref_not_found` before a correction is accepted.
- No schema change. `failure_code` is free text.
## Model Used
- Claude Opus 5.5 (`claude-opus-5-5`), Anthropic, agentic coding with
tool use (shell, file edit, browser read-only diagnostics).
## Checklist
- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have searched GitHub for duplicate or related PRs and linked
them above
- [x] I have either (a) linked existing issues with `Fixes: #` / `Closes
#` / `Refs #` OR (b) described the issue in-PR following the relevant
issue template
- [x] I have not referenced internal/instance-local Paperclip issues or
links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip`
URLs)
- [x] My branch name describes the change (e.g. `docs/...`, `fix/...`)
and contains no internal Paperclip ticket id or instance-derived details
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [ ] All Paperclip CI gates are green
- [ ] Greptile is 5/5 with no open P2s, recommendations, or follow-ups
- [x] I will address all Greptile and reviewer comments before
requesting merge
🤖 Generated with [Claude Code](https://claude.com/claude-code)
---------
Co-authored-by: Claude Opus 5.5 <noreply@anthropic.com>
|
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Nicky LeachandClaude Opus 5.5
|
11ac90e31f |
fix(build): typecheck server/src/__tests__ and fix every type error (#18739)
## Thinking Path > - Paperclip is the open source app people use to manage AI agents for work > - The server has about 1,100 test and helper files in `server/src/__tests__` > - `server/tsconfig.json` excludes that directory, Vitest does not check types, and no script runs the tsconfig in that directory > - So a test can call a function with the wrong arguments and still pass, and no tool reports it > - This gap hid 2,168 real type errors, and some of them hid tests that did not test what they claim > - This pull request fixes all of these errors and adds the directory to the server layers from paperclipai/paperclip#18737 > - The benefit is that a type error in a server test now fails the typecheck, with no baseline and no backlog ## Linked Issues or Issue Description Refs paperclipai/paperclip#18737, which is merged and added the server layers. Refs paperclipai/paperclip#18738, which is merged and checks the test projects outside `pnpm -r`, so it is not a duplicate. Refs paperclipai/paperclip#18137, which records that this directory has no check. **What happened?** No tool checked the types of 1,074 of the 1,101 files in `server/src/__tests__`. I searched `package.json`, the workflows, and all tsconfig files. 27 files are in the program of another tsconfig, and these 27 have 0 errors. 11 of the 27 are in `helpers/maintenance/tsconfig.json`. No script ran that project when I measured this. paperclipai/paperclip#18738 now runs it. **Expected behavior** The server typecheck checks these files, and a type error fails the check. **Steps to reproduce** 1. On the base commit, run `tsc -p server/src/__tests__/tsconfig.json --noEmit`. It reports 6,536 errors and needs 12.3 GiB. 2. Add a type error to any file in `server/src/__tests__`. 3. Run `pnpm --filter @paperclipai/server typecheck`. It passes. **Paperclip version or commit** I measured the error breakdown below on commit `8dfd632452`, with TypeScript 7.0.2. The branch now includes master up to paperclipai/paperclip#18865. **Deployment mode** Not applicable. This issue applies to development and CI. No production source file in the server changes. ### Error breakdown Each row adds one change to the row above. | Step | Total errors | Change | Cause | | --- | --- | --- | --- | | Config as committed | 6,536 | | | | Add `src/types/*.d.ts` | 4,447 | -2,089 | Config. The Express request types were missing. | | Set `rootDir` to the repository root | 2,436 | -2,011 | Config. | | Set `allowImportingTsExtensions` | 2,181 | -255 | Config. Vitest accepts `.ts` imports. | | Add `ES2024.Promise` to `lib` | 2,138 | -43 | Config. Node 24 has `Promise.withResolvers`. | | Set `allowJs` for `.mjs` imports | 2,148 | +10 | Config. It removes 8 `TS7016` errors and shows new real errors. | | Set `declaration` to false | 2,142 | -6 | Config. Tests emit nothing. | | Count only files in `server/src` | 2,058 | -84 | Other packages: 53 Daytona, 29 Runner test, 2 UI. | So 4,478 of the 6,536 errors (69%) came from config or scope, and 2,058 are real type errors in 314 files. The 29 Runner test errors are also real, which gives 2,087 errors. Tests that master added after this measurement had 81 more errors, so this pull request fixes 2,168 errors. This table classifies the first 2,058 errors. | Kind of real error | Errors | | --- | --- | | Wrong argument or assignment type | 1,023 | | Stale or partial fixture objects | 525 | | Property that the type does not have | 317 | | Missing narrowing of null or unknown | 101 | | Implicit any | 60 | | Missing name or module | 16 | | Other | 16 | ### What the type errors hid Most errors were stale fixtures and loose mocks. These errors hid real test problems, and this pull request fixes them: - **A test that never ran.** `instrumentation.test.ts` required `sdk-trace-base`, which is not installed. So 3 span tests were skipped. They now run and pass. - **Assertions that could not fail.** - `issue-thread-interactions-service` used a company ID as an issue ID. - `status-card-evaluation-work` compared `[]` with `[]` in a rollback check. - `slack-conversation-lifecycle` read `item.issueId`, which does not exist. - `email-channels` used a permission key that does not exist. - `heartbeat-project-env` imported `LOW_TRUST_REVIEW_PRESET`, which is not exported. The value was undefined. - **Postgres processes that did not stop.** 11 test files called `stop` on the test database helper. That method does not exist, and the helper method is `cleanup`. - **Arguments that the service ignored.** - `methodKey` is now `connectionMethodKey` in the Daytona, Unikraft, 1Password, and Railway tests. - 108 calls passed `"owner-user"` to a parameter that expects an options object. - 9 chat wizard fixtures passed `managementContext` as `source`, so they ran `existing_app` and not `manifest`. - 2 tests passed a `{ userId }` actor that the function ignores. - Inserts into `environments` passed a `companyId` column that the table does not have. - **Problems in tests that master added during this work.** - `sandbox-creation-operations` read `database.connectionString` when an external test database was set. In that mode `database` is undefined, so the fixture would stop with a TypeError. It now uses the external URL. - `idle-completed-history` set a Dot operation to `dispatched`. That is a Muse status, and the Dot type does not have it. The fixture now uses `admitted`, which is a real in-flight Dot status. ### Possible product problems, not changed These may be real problems in production code or types. I did not change them, because this pull request does not change production behavior: - `decisions-service` `service.create` does not validate the lenient `cancel_issue_tree` input. - `createConnection` ignores `input.connectionPurpose`. - The `createConnection` route schema default stores `{}` for `transportConfig`. - `prepareManagedAiRuntime` accepted the invalid value `mode: "connection"`. - `createBinding` accepts invalid `projectionClass` strings outside class 3. - `ensureManagedProjectWorkspace` forwards an untyped `repoRef` by spread. - `routineVariableSchema.label` is optional, but `RoutineVariable.label` is required. - `ToolRunContext.projectId` may be too strict. - `withdrawInteraction` reads `issue.status`, which its type omits. - `issueService.list` and `reconcileNativeFinalizations` omit fields that they return at runtime. - `createGitHubExternalObjectProvider` handles `tokenProvider: null`, but its type forbids this value. ## What Changed - Fixed the 2,168 type errors. The diff changes 322 test and helper files. - Corrected `server/src/__tests__/tsconfig.json`. Editors and the typecheck now read the same options and report the same errors. - Added three `test-tree` layers to `server/scripts/typecheck-layers.mjs`. They read the server layers as declarations, and any error fails them. A hash of the path selects the shard, so a new file does not move other files. - Added `server/scripts/typecheck-stubs/daytona-sdk.d.ts`. Server tests reach Daytona plugin source, and the root install does not have `@daytonaio/sdk`. - Changed two imports in `ui/src/lib/issue-execution-policy.ts` to use `.js` extensions, because server tests import this file. - Made `declarationsConfig` and `--declarations-only` skip the `test-tree` layers, because these layers emit nothing. Other projects read only the source layers. Added a test for this. - Updated `doc/DEVELOPING.md`. ## Verification Run these commands: ```sh pnpm --filter @paperclipai/server typecheck pnpm exec vitest run server/scripts/typecheck-layers.test.mjs ``` Results on macOS (arm64), Node 24, 16 cores. Each check ran after the merge of paperclipai/paperclip#18738 unless the row says otherwise: | Check | Commit | Result | | --- | --- | --- | | Server typecheck, `PAPERCLIP_TYPECHECK_LOW_MEMORY=1`, all 7 layers | `6e45a08573` | Exit 0, 0 errors, 62 seconds, peak 3.52 GiB | | `node scripts/typecheck-test-projects.mjs --low-memory` | `a3306bd13e` | Exit 0, 0 errors, 42 seconds, peak 3.25 GiB | | The same script with `--reuse-declarations` | `1b878aabc0` | Exit 0, 0 errors | | `typecheck-layers.test.mjs` and `live-recovery-work.test.ts` | `01db5634e4` | 90 passed. These include real compiler runs for a pass, a type error, and an invalid tsconfig. | | `tsconfig.declarations.json` after a full server typecheck | `0fb1e4fb0a` | It references only `below`, `cycle`, and `above`. No generated config names a `tsconfig.layers.json` file. | | Owned runtime test in `idle-completed-history` | `e8f2f448ac` | Passed, with the fix that master later replaced | | `idle-incoming-wake`, `plugin-idle-manager`, and the changed `chat-channels` test | `6e45a08573` | 30 passed | | Runner `native-execution.test.ts` | `eab4dcc1f4` | 114 passed | | The 19 server test files that changed since `eab4dcc1f4`, and `typecheck-layers.test.mjs` | `259737b700` | 4,275 of 4,277 passed. The 2 failures are in `chat-channels` and are in the list of 7 below. | The peak is the largest single process, from `/usr/bin/time -l`. Peaks for the server typecheck were between 3.42 GiB and 3.56 GiB across 8 runs. Peaks for the test projects were 3.25 GiB and 3.37 GiB across 2 runs. I did not measure a cgroup. **Runtime check of the fixes.** Types do not prove that a test still works. So I ran all 309 changed server test files, 11,929 tests, before the rebase onto paperclipai/paperclip#18737: | Result | Tests | Detail | | --- | --- | --- | | Passed | 11,913 | Includes the 2 tests and the 54 `dot-runner` tests that passed in a later run, as described below. | | Failed | 7 | The same 7 tests also fail on the commit before the fixes. | | Skipped | 9 | These tests have their own skip conditions: `sentry` 5, and 1 each in `bundled-plugin-registration`, `customer-success-cloud`, `onepassword-connection`, and `workspace-runtime-https-live-exercise`. | The 7 tests that fail with and without this change, on my machine: - 3 tests in `chat-channels` and `email-channels` stop with `ENOENT` on a `SKILL.md` file. The path is in the parent checkout, above the git worktree that I used, so I expect that the worktree is the cause. I did not prove this. - `workspace-instance-cleanup` compares `/private/var/...` with `/var/...`. This is a macOS symlink difference. - 2 tests in `git-reproducible-managed-checkouts` get `unknown_base_git_files` and expect `unpushed_managed_checkout`. I did not find the cause. - 1 more test in `chat-channels`, `materializes direct external-chat finals once`, gets `undefined`. I did not find the cause. CI is the check for these 7 tests. `ci / verify` passed on `eab4dcc1f4`. Failures during this work: - My fix to `agent-runtime-connector-access` changed an invalid permission key in the setup, but not in the assertion. The runtime check found this. I corrected the assertion, and the file passes. - `heartbeat-plugin-environment` failed one wait in the full run. It passed three times alone, so I think that load caused the failure. It can fail again under load. - `dot-runner` skipped all 54 tests in the full run because `cargo` was not on my `PATH`. It then passed 54 of 54 with the toolchain on the `PATH`. - My first `lib` value removed the default DOM types, and the error count went up by 375. I added the DOM libraries. - My Daytona stub with bare `any` left 48 errors, because generic helpers then inferred `unknown`. I added shapes that return promises. - One fix to `agent-secrets-routes` used `class_3_static_lease`, and the test failed. That class allows only specific paths. I reverted to `unclassified`. - `ci / General tests (server (8/12))` failed on `259737b700` because of the flaky port in `idle-completed-history`. paperclipai/paperclip#18853 fixed this test on master, so this pull request keeps that fix. **Audit of the diff.** I counted these patterns in added and removed lines, to find fixes that only hide an error: | Pattern | Added | Removed | | --- | --- | --- | | `@ts-ignore` | 0 | 0 | | `@ts-expect-error` | 0 | 1 | | `.skip` | 0 | 0 | | `as any` | 9 | 9 | | `: any` | 11 | 2 | | `as never` | 8 | 2 | | `as unknown as` | 35 | 4 | | `Promise<unknown>` | 16 | 5 | | `expect(` | 128 | 113 | No hunk removes more `expect(` calls than it adds. Three removals of test content were intentional, and I checked each one: - `muse-control` removed `signalToken`. Line 1012 already asserts that it is absent. - `merged-pr-confirmation-sweep` removed legacy aliases. Other tests cover them. - `heartbeat-workspace-branch-containment` removed a `finalize` branch that no test row can reach. Some partial fixtures stay unchecked through `as unknown as` and `Promise<unknown>`, mostly in `issue-agent-mutation-ownership-routes` and `issue-comment-reopen-routes`. **Accuracy of the check.** One program over the tree and the three shards reported the same errors at the same positions. Memory, as the peak of the largest process on one thread, was 3.93 GiB for one program and 2.43 GiB for the largest shard. I measured these two values before the fixes. Not run or not proven: - I did not run the full `pnpm test:run`, or a root `pnpm build`. I expect CI to run the full suites. - I did not run the 4 GiB container check, or the full `scripts/typecheck-low-memory.mjs`. The peaks above come from macOS, so they are not a Linux cgroup measurement. - I did not run the UI typecheck after the merges. - `workspace-runtime-https-live-exercise` is skipped, so its `cleanup` fix did not run. ## Risks - **A large diff in test files.** 328 files change. A pull request that edits the same tests can get merge conflicts. New tests on master can also add type errors before this merges. Any such error fails this check and needs a fix here. - **A higher cost for changes to source types.** A change to a type can add errors in test files that the author did not touch. The author must then fix them. This is the purpose of the check, but it is new work. - **Changed test behavior.** Some tests now run paths that they did not run before, such as the 9 chat wizard fixtures and the 3 span tests. They pass here, but they can be more sensitive to timing or to the environment. - **The Daytona stub can go stale.** The stub is written by hand. If the plugin uses a new SDK member, the typecheck reports an error until someone updates the stub. - **The release path.** `release-verify.yml` and `scripts/release.sh` run `pnpm -r typecheck`, so they now run this check. - **The tsconfig change.** The test transform reads `server/src/__tests__/tsconfig.json`. The options that I changed are for type checks, and the runs above passed. - **A gap that remains.** Tsconfigs in `packages/paperclip-runner` and in most sandbox provider plugins exclude `*.test.ts`. This check does not read most of those test files, so they can still drift. That work is separate from this pull request. > For core feature work, check [`ROADMAP.md`](ROADMAP.md) first and discuss it in `#dev` before opening the PR. Feature PRs that overlap with planned core work may need to be redirected — check the roadmap first. See `CONTRIBUTING.md`. ## Model Used Anthropic Claude Opus 5.5 (`claude-opus-5-5`) through Claude Code, with reasoning, tool use, code execution, and subagents. The runtime does not show the context window size. ## Checklist - [x] I have included a thinking path that traces from project context to this change - [x] I have specified the model used (with version and capability details) - [x] I have checked ROADMAP.md and confirmed this PR does not duplicate planned core work - [x] I have searched GitHub for duplicate or related PRs and linked them above - [x] I have either (a) linked existing issues with `Fixes: #` / `Closes #` / `Refs #` OR (b) described the issue in-PR following the relevant issue template - [x] I have not referenced internal/instance-local Paperclip issues or links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip` URLs) - [x] My branch name describes the change (e.g. `docs/...`, `fix/...`) and contains no internal Paperclip ticket id or instance-derived details - [ ] I have run tests locally and they pass (7 tests fail locally, with and without this change. See Verification.) - [x] I have added or updated tests where applicable - [x] I have updated relevant documentation to reflect my changes - [x] I have considered and documented any risks above - [ ] All Paperclip CI gates are green - [ ] Greptile is 5/5 with no open P2s, recommendations, or follow-ups - [x] I will address all Greptile and reviewer comments before requesting merge 🤖 Generated with [Claude Code](https://claude.com/claude-code) --------- Co-authored-by: Claude Opus 5.5 <noreply@anthropic.com> |
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DottaandPaperclip
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f329b24ee1 |
feat: give tasks durable project-optional workspaces (#15749)
Give tasks durable company-scoped workspace bindings independent of project assignment, channel defaults and authorized repository preparation. Reuse verified input seeds and sparse output recovery while preserving trust, privacy and controller provisioning boundaries.
Full CI and E2E, Superagent, legacy checks and Greptile Apex 5/5 passed on reviewed head
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Devin FoleyandPaperclip
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3d0e74e743 |
Keep proven external connection failures out of Sentry (#15590)
Apply the reviewed change for Keep proven external connection failures out of Sentry. Validation: local typecheck/build and focused regression tests, passing exact-head CI, Greptile 5/5, and independent source review. The PR records full-suite evidence and any local environment limitations. Co-Authored-By: Paperclip <noreply@paperclip.ing> |
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DottaandPaperclip
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8f1905d34d |
fix: provision all project repositories for local and sandbox tasks (#13442)
## Thinking Path > - Paperclip is the open source app people use to manage AI agents for work. > - Projects can now attach several source repositories. > - Task preparation still treated these sources as alternative workspaces. > - Sandbox sync preserved Git history only for the selected repository. > - A task needs every attached repository to complete work across the project. > - This pull request prepares all distinct project repositories and preserves their separate Git histories through sandbox restore. ## Linked Issues or Issue Description **What happened?** A user reported that a project with two repositories received only the first repository in Daytona. Repository-only project rows also reached the agent with null local paths. Managed checkouts with matching repository names could resolve to the same directory. **Expected behavior** Local and sandbox tasks receive every distinct repository attached to their project. Repository-only sources work without preconfigured local folders. Each repository keeps its own Git history and working files. **Steps to reproduce** 1. Create a project with two repository sources and no local folder paths. 2. Assign a task to the project and run it in Daytona. 3. Inspect the task workspace and the repository paths exposed to the agent. 4. Observe that the original implementation supplies only the selected checkout. Related change: #13010 added multiple repository selection. The open repository-catalog proposals #11234 and #11228 cover a different data model. This fix uses the existing project workspaces. ## What Changed - Materialize each additional distinct repository as an editable checkout inside the task root. Seed configured local sources with their current working files and retain task edits across runs. - Pass materialized repository paths to local agents and native sandbox task prompts. Apply existing run-scoped Git credentials to each remote clone. - Preserve each repository's Git history, dirty files, and restore baseline during sandbox staging and durable recovery. Apply each repository's ignore rules and the operator's workspace exclusions. - Keep same-name managed repositories in separate directories. Report additional clone failures before the task starts. - Add task-level, checkout, sandbox round-trip, environment-hint, and recovery-descriptor regression coverage. Document checkout and restore behavior. ## Verification - Red: the original implementation fails the sandbox test because the second repository has no Git directory. It also fails the same-name checkout test and both real-database task tests because repository hints have no local path. - Green: focused tests pass for one and two repository-only sources, local source edits, clone failures, per-repository credentials, separate Git histories, ignored files, and recovery from remote or durable seed state. - Live Daytona smoke passed with two disposable repositories through the production provider sync functions. Both repositories arrived with Git history. Commits from both restored locally. Ignored files stayed excluded. The disposable sandbox was deleted. - Passed on final commit `93ab76763`: `pnpm -r typecheck` and `pnpm build`. - Final focused coverage: 254 assertions across the six changed test areas passed across the serial run and an isolated rerun of the existing process-kill timing test. The live Daytona smoke also passed. - The local `pnpm test:run` overlapped source edits and retained stale transformed code. Its first phase reported 12,240 passed assertions, nine failed assertions, three hook failures, and one worker error; later phases did not run locally. This run is not claimed as green. Fresh focused tests verify the changes, and every general/workspace and serialized-server CI shard passes on the final commit. - Final CI is green on `93ab76763`: all test shards, all three browser shards, typecheck, build, runner verification, canary dry run, and security checks. The initial unrelated chat-delivery browser timing failure passed in the final CI run. Optional Storybook visual checks were skipped. - Greptile is 5/5 on the final commit with no unresolved review threads. Its checkout-race finding was reproduced with a failing test, fixed, and rechecked. ## Risks - Additional repositories need disk space and clone time. Access failure for an attached repository stops preparation. - Additional checkouts live under `.paperclip-repositories/` and keep independent histories. Changes stay in those task copies; they do not overwrite configured source folders. - Detached or reconfigured repository copies are retained under `.paperclip-runtime/detached-repositories/`. Sandbox recovery retains per-repository merge baselines. - No database migration, UI contract change, or new credential delegation is required. Referenced projects retain their separate read-only behavior. ## Model Used OpenAI Codex, based on GPT-6, with repository inspection, code execution, and tool use. The runtime does not expose a more specific model deployment ID or context-window size. ## Checklist - [x] I have included a thinking path that traces from project context to this change - [x] I have specified the model used (with version and capability details) - [x] I have checked ROADMAP.md and confirmed this PR does not duplicate planned core work - [x] I have searched GitHub for duplicate or related PRs and linked them above - [x] I have either (a) linked existing issues with `Fixes: #` / `Closes #` / `Refs #` OR (b) described the issue in-PR following the relevant issue template - [x] I have not referenced internal/instance-local Paperclip issues or links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip` URLs) - [x] My branch name describes the change (e.g. `docs/...`, `fix/...`) and contains no internal Paperclip ticket id or instance-derived details - [x] I have run tests locally and they pass - [x] I have added or updated tests where applicable - [x] I have updated relevant documentation to reflect my changes - [x] I have considered and documented any risks above - [x] All Paperclip CI gates are green - [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups - [x] I will address all Greptile and reviewer comments before requesting merge --------- Co-authored-by: Paperclip <noreply@paperclip.ing> |
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Devin Foley
|
2c90cf0f2c |
fix(server): serialize managed-checkout materialization and stop misattributing clone failures (#10723)
## Thinking Path
> - Paperclip is the open source app people use to manage AI agents for
work
> - Repo-only project workspaces are materialized by a server-side
managed `git clone` into a per-project directory (#10720 added
credentials for private repos)
> - Two issues on the same project routinely wake seconds apart, and
both runs race the same clone target
> - The loser fails with "destination path already exists", and its
failure cleanup removes the directory out from under the winner's
in-progress clone — both runs then fail every round
> - This pull request serializes materialization per target directory
and makes the clone land atomically via a temp sibling + rename, so the
shared target is never partial and never removed
> - The benefit is that concurrent runs on the same project converge:
one clone happens, everyone adopts it, and unrelated failures no longer
blame the GitHub credential
## Linked Issues or Issue Description
**What happened?**
With isolated workspaces enabled on a project whose only workspace is
repo-only, unblocking two issues at once produced lockstep mutual
destruction (observed live, two consecutive rounds): both runs called
the managed-checkout materialization concurrently; one clone created the
target directory, the other's `git clone` failed with `fatal:
destination path '…' already exists and is not an empty directory`, and
that run's failure cleanup deleted the directory while the first clone
was still writing into it (`fatal: could not set 'core…'`). Both runs
failed `workspace_validation_failed`; their staggered retries could race
again. The failure message also wrongly claimed the GitHub credential
"was rejected or lacks access" — the collision had nothing to do with
auth.
**Expected behavior**
Concurrent materializations of the same project checkout share one
clone; a completed checkout is never removed by a failing sibling; the
credential is only blamed for auth-shaped failures.
**Steps to reproduce**
1. Project with a repo-only workspace (private repo, isolated workspaces
on).
2. Move two issues on that project to `todo` at the same time so both
runs start within seconds.
3. Both runs fail workspace validation with "destination path already
exists" / "could not set 'core…'" instead of one clone succeeding.
**Paperclip version or commit**
`master` (
|
||
|
Devin Foley
|
e0c2448267 |
feat(server): authenticate server-side git clone and fetch with a company-secret GitHub token (#10720)
## Thinking Path > - Paperclip is the open source app people use to manage AI agents for work > - Repo-only project workspaces are materialized by a server-side `git clone`, and isolated `git_worktree` runs refresh their base ref with server-side `git fetch` > - Both operations run outside the agent process with no credentials, so private GitHub repositories can never be cloned or refreshed — agent-scoped credential env bindings do not reach them > - The company secret store already has a well-known GitHub token convention (`GITHUB_TOKEN` / `GH_TOKEN` / `PAPERCLIP_GITHUB_TOKEN`, consumed by the external-object provider for API reads), but nothing server-side consults it for git > - This pull request resolves that token per run and authenticates the managed clone and every base-ref refresh with it through an ephemeral credential helper > - The benefit is that isolated workspaces work on private repositories with one company secret, while public repositories and self-hosted ambient git configuration keep working unchanged ## Linked Issues or Issue Description **Subsystem affected** Server workspace materialization (`server/src/services/heartbeat.ts`) and execution-workspace realization (`server/src/services/workspace-runtime.ts`). **Problem or motivation** A project workspace configured with only a private GitHub `repoUrl` cannot be used for isolated `git_worktree` runs: the managed `git clone` runs with a sanitized, credential-less environment, and plain git cannot consume a bare token env variable without a credential helper. There is no way to give the server a git credential — storing a `GH_TOKEN` company secret has no effect on server-side git, and a credential-less private clone hangs on a terminal prompt until the ten-minute clone timeout. Base-ref refreshes (`git fetch`) during worktree realization have the same gap. **Proposed solution** A `git-credentials` module resolves a token per run — company secret by well-known name (`GITHUB_TOKEN`, `GH_TOKEN`, `PAPERCLIP_GITHUB_TOKEN`), then `GITHUB_TOKEN`/`GH_TOKEN` in the server process environment for self-hosted deployments, then none — and builds a git invocation that authenticates via an inline credential helper. The token travels in an env variable; it never appears in argv, URLs, or on disk. Only `https://github.com` remotes are authenticated; everything else keeps ambient behavior. The provider is a single factory seam so a future brokered credential source can replace it without touching call sites. **Alternatives considered** - A GitHub OAuth "connect your account" flow: heavier product surface, needs app registration and callback custody; out of scope for a server credential and better served by a dedicated connector later. The provider seam keeps that path open. - `gh auth setup-git`: writes helper configuration to disk and requires a global token env; rejected in favor of per-invocation config with no persistent state. - Embedding the token in the clone URL: leaks into argv, error messages, and `.git/config`; rejected. ## What Changed - New `server/src/services/git-credentials.ts`: `createGitRemoteAuthProvider` (memoized per run, one secret resolution and one audit event), `buildGitAuthInvocation` (helper-reset + inline helper, `x-access-token` username, `GIT_TERMINAL_PROMPT=0`), `isGitHubHttpsRemoteUrl` host gating (rejects ssh/GHES/http/other hosts/userinfo URLs), `describeGitAuthFailure`, and the canonical `scrubGitCredentialText`. Secret resolutions pass a `system` consumer access context so they are recorded as secret access events. - `ensureManagedProjectWorkspace` (now exported) accepts an optional auth provider; the clone env spreads the token after `sanitizeRuntimeServiceBaseEnv` (which strips `PAPERCLIP_*`), always sets `GIT_TERMINAL_PROMPT=0`, distinguishes "credential rejected" from "no credential configured — add a GITHUB_TOKEN or GH_TOKEN company secret" in the error, and removes the partially created directory on clone failure so a timeout-killed clone cannot be adopted as a broken checkout by the next run. - `refreshRemoteTrackingBaseRef` (now exported) captures the remote URL it already looked up, asks the provider for an invocation, and attributes failed authenticated fetches to the credential in a scrubbed warning. The optional provider threads through `detectDefaultBranch`, `resolveAuthoritativeBaseRef`, `inspectExecutionWorkspaceBaseDrift`, `realizeExecutionWorkspace`, and `ensurePersistedExecutionWorkspaceAvailable`; heartbeat builds one provider per run for both the anchor-resolution clone path and workspace realization/restore. - `github-external-object-provider.ts` imports the shared secret-name list; `isGitHubDotCom` is exported from `github-fetch.ts`. - Docs: "Private repositories and repo-only project workspaces" section in the execution-workspaces guide, cross-linked from the secrets deploy doc. ## Verification - `cd server && npx vitest run src/__tests__/git-credentials.test.ts` — resolution chain order and precedence, env fallback, memoization, audited access context, host-gating matrix, invocation shape (token absent from argv), scrubber, failure descriptions, and a real-git `git credential fill` round trip that proves the helper executes and answers with the env-carried token (no network). - `cd server && npx vitest run src/__tests__/heartbeat-managed-clone-credentials.test.ts` — clones behave byte-identically with no provider or a null-returning provider (local repos, no network), authenticated-failure errors name the credential, non-auth failures do not mention credentials, partial clone directories are removed, pre-existing non-git directories keep the "Using it as-is" path, and the sanitizer spread order keeps the token env alive. - `cd server && npx vitest run src/__tests__/workspace-runtime.test.ts` — new `refreshRemoteTrackingBaseRef` cases: provider offered the remote URL and null keeps behavior identical; failed authenticated fetch warning names the credential; unauthenticated failure warning stays credential-free. - `pnpm --filter @paperclipai/server typecheck` is clean. - Manual (optional, networked): store a `GH_TOKEN` company secret, configure a repo-only project workspace pointing at a private GitHub repository, run an isolated-workspace issue — the managed clone succeeds and the worktree run proceeds. ## Risks - Every new parameter is optional; with no provider the git invocations are byte-identical to before. Public repos and ambient credential helpers keep working whenever no token resolves. - Precedence change when a token exists: a stored company secret now wins over ambient helpers for `https://github.com` remotes (the helper list is reset for that invocation). The rejected-credential error names the secret so an operator can fix or remove it. - `GIT_TERMINAL_PROMPT=0` on the managed clone is the one always-on change: a credential-less private clone now fails fast with a clear message instead of hanging until the ten-minute timeout (it could only ever "succeed" interactively on a TTY dev server). - The token is scoped to the git process env for one invocation; it is never written to agent env, run context, disk, or logs, and error text is scrubbed of URL userinfo. - No migrations, no image changes (git ships in the image). ## Model Used Claude Fable 5 (`claude-fable-5`, extended thinking, agentic tool use via Claude Code CLI). ## Checklist - [x] I have included a thinking path that traces from project context to this change - [x] I have specified the model used (with version and capability details) - [x] I have checked ROADMAP.md and confirmed this PR does not duplicate planned core work - [x] I have searched GitHub for duplicate or related PRs and linked them above - [x] I have either (a) linked existing issues with `Fixes: #` / `Closes #` / `Refs #` OR (b) described the issue in-PR following the relevant issue template - [x] I have not referenced internal/instance-local Paperclip issues or links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip` URLs) - [x] My branch name describes the change (e.g. `docs/...`, `fix/...`) and contains no internal Paperclip ticket id or instance-derived details - [x] I have run tests locally and they pass - [x] I have added or updated tests where applicable - [x] I have updated relevant documentation to reflect my changes - [x] I have considered and documented any risks above - [ ] All Paperclip CI gates are green - [ ] Greptile is 5/5 with no open P2s, recommendations, or follow-ups - [x] I will address all Greptile and reviewer comments before requesting merge |