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| Author | SHA1 | Message | Date | |
|---|---|---|---|---|
 Nicky LeachandClaude Opus 5.5
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f9d366acdf |
fix(runner): require a managed AI connection for plugin Runner-task environments (#19341)
## Thinking Path > - Paperclip is the open source app people use to manage AI agents for work. > - A plugin can provide Runner execution through an environment driver that declares `supportsTasks: true`. Agent computers use this path. > - Core let an agent without a managed AI connection run on that path. The run then used the account that was installed on the plugin's execution host. > - That is not a supported credential source. When the host Runner did not match, the run failed three times, 30 seconds apart, and then blocked the task with a generic error. The error did not name the fix. > - The plugin cannot refuse these runs itself. `describe` has no connection data, and Core replaces plugin error text before the user sees it. > - This pull request makes a managed AI connection a requirement for every plugin Runner-task environment. Core refuses a run without one before it acquires a lease or calls the plugin. > - The benefit is one clear notice that tells the operator to choose an AI connection, and no wasted retries or plugin work. ## Linked Issues or Issue Description Refs #19326. That pull request makes a Runner revision mismatch retry. It noted that runs without a managed AI connection reach the Runner check on a different path, which still blocks after 3 attempts. This pull request removes that path for plugin Runner-task environments. **Problem or motivation** A `paperclip_runner` agent with no managed AI connection can run in a plugin environment that provides Runner tasks. The run uses the account installed on the execution host. If the host Runner does not match, the native session retries 3 times and then blocks the task with "Plugin-provided Runner execution operation unavailable". The operator cannot tell what to fix. **Proposed solution** Refuse these runs in Core before any lease, plugin call, secret resolution, or provider work. Use one stable reason, `ai_connection_required`, for run admission, the setup probe, and agent verification. Show a task notice that names the fix. **Alternatives considered** A refusal in the plugin. It cannot see the connection at `describe`, which runs first. Its error text is also replaced twice before the user sees it. A new structured plugin error code would still not cover `describe`. ## What Changed - Add `server/src/services/plugin-runner-ai-connection.ts`. It holds the `ai_connection_required` code and message, the probe result, and the manifest lookup for a Runner-task driver. The lookup moves here from `agent-runner-selection.ts`, so run admission and runner selection use the same rule. - `heartbeat/execution-configuration.ts`: refuse a new `paperclip_runner` run in a Runner-task environment when it has no managed AI connection. This also applies when `homeMode: "preconfigured"` drops the connection. The run fails as `configuration_incomplete` with reason `ai_connection_required` and an action URL to the agent's runtime settings. The check runs before observability, secrets, the managed runtime, the workspace, and the lease. A resumed native run keeps its admitted contract. - `recovery/stranded-notice.ts`: add an "AI connection required" task notice. - `run-failure-report.ts`: treat this pre-dispatch refusal as an owner action, not an unexpected failure. - `adapters/registry.ts`: the unmanaged probe for a Runner-task target now returns a failed `ai_connection_required` check. It calls no task operation. Managed probes still go through `testManagedEnvironment`. - `agent-harness-verification.ts` and `agent-lifecycle/application/failure.ts`: classify the check as `ai_connection_required` with a fixed message. Verification waits for the configuration to change instead of retrying. - Docs: `PLUGIN_RUNNER_EXECUTION.md` states the requirement. `PLUGIN_ENVIRONMENT_TASKS.md` no longer mentions installed accounts. `agent-config-ui.md` notes the requirement. - Tests: the "plugin-owned account" heartbeat test described the behavior that this change removes. It now checks the assembled heartbeat refusal: no plugin call, no native boundary, no adapter, no workspace files. ## Verification - `npx vitest run` in `server/` for these files. All tests passed: - `src/__tests__/heartbeat-execution-configuration.test.ts`. New cases: refused without a connection, refused for a preconfigured home, managed passes, resumed native input passes, non-task plugin driver passes. The refused cases also check that observability, secrets, and the managed runtime did not start. - `src/__tests__/heartbeat-plugin-environment.test.ts`. One test, "inherits the instance default environment across companies…", also fails on unmodified `master` in my environment. This change does not touch it, because its driver does not declare `supportsTasks`. - `src/adapters/registry.test.ts`, `src/__tests__/agent-harness-verification.test.ts`, `src/modules/agent-lifecycle/__tests__/diagnostics.test.ts`, `src/services/recovery/stranded-notice.test.ts`, and `src/services/__tests__/run-failure-report.test.ts`. - 17 more suites that use plugin Runner-task environments, with 705 tests: `plugin-runner-task.integration`, `plugin-warm-tasks.integration`, `task-creation-recovery.integration`, `native-startup-cleanup-recovery`, `environment-task-authority.integration`, `plugin-task-credential-writeback`, agent-lifecycle `lifecycle`, `setup`, and `environment-plugins`, `workspace-preparation`, `agent-runner-selection`, `agent-harness-verification-provider-api`, `agent-harness-verification-remote`, `plugin-environment-driver-seam`, `environment-task-runtime`, `agent-test-environment-routes`, and `adapter-registry`. - `pnpm typecheck` in `server/` reported no errors in the changed files. Its only errors came from sandbox-provider packages that my local install did not link. - Not run: `plugin-runner-probe.test.ts`, because it needs a Cargo build. This change does not modify `probePluginRunnerEnvironment`. Also not run: the full `pnpm test:run` and `pnpm build`. CI runs them. ## Risks - Behavior change: an agent in a plugin Runner-task environment with no managed AI connection now stops before dispatch. Before, it ran with the host's installed account. The agent's owner must choose an AI connection. This includes agents with `homeMode: "preconfigured"` in these environments. - Runs that were already admitted and resume from saved native input are not refused. They keep the earlier behavior until they finish. - The check reads the plugin manifest on each new run admission for plugin environments. This is the same lookup that runner selection already does. - This pull request and #19326 both edit `stranded-notice.ts` and `failure.ts`. The changes are additive, but whichever merges second needs a small rebase. ## Model Used - Claude Opus 5.5 (`claude-opus-5-5`), Anthropic, in Claude Code with tool use (file edits, shell, test runs). Default context window, extended thinking on. ## Checklist - [x] I have included a thinking path that traces from project context to this change - [x] I have specified the model used (with version and capability details) - [x] I have checked ROADMAP.md and confirmed this PR does not duplicate planned core work - [x] I have searched GitHub for duplicate or related PRs and linked them above - [x] I have either (a) linked existing issues with `Fixes: #` / `Closes #` / `Refs #` OR (b) described the issue in-PR following the relevant issue template - [x] I have not referenced internal/instance-local Paperclip issues or links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip` URLs) - [x] My branch name describes the change (e.g. `docs/...`, `fix/...`) and contains no internal Paperclip ticket id or instance-derived details - [x] I have run tests locally and they pass - [x] I have added or updated tests where applicable - [x] I have updated relevant documentation to reflect my changes - [x] I have considered and documented any risks above - [x] All Paperclip CI gates are green - [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups - [x] I will address all Greptile and reviewer comments before requesting merge 🤖 Generated with [Claude Code](https://claude.com/claude-code) --------- Co-authored-by: Claude Opus 5.5 <noreply@anthropic.com> |
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Nicky LeachandClaude Opus 5.5
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11ac90e31f |
fix(build): typecheck server/src/__tests__ and fix every type error (#18739)
## Thinking Path > - Paperclip is the open source app people use to manage AI agents for work > - The server has about 1,100 test and helper files in `server/src/__tests__` > - `server/tsconfig.json` excludes that directory, Vitest does not check types, and no script runs the tsconfig in that directory > - So a test can call a function with the wrong arguments and still pass, and no tool reports it > - This gap hid 2,168 real type errors, and some of them hid tests that did not test what they claim > - This pull request fixes all of these errors and adds the directory to the server layers from paperclipai/paperclip#18737 > - The benefit is that a type error in a server test now fails the typecheck, with no baseline and no backlog ## Linked Issues or Issue Description Refs paperclipai/paperclip#18737, which is merged and added the server layers. Refs paperclipai/paperclip#18738, which is merged and checks the test projects outside `pnpm -r`, so it is not a duplicate. Refs paperclipai/paperclip#18137, which records that this directory has no check. **What happened?** No tool checked the types of 1,074 of the 1,101 files in `server/src/__tests__`. I searched `package.json`, the workflows, and all tsconfig files. 27 files are in the program of another tsconfig, and these 27 have 0 errors. 11 of the 27 are in `helpers/maintenance/tsconfig.json`. No script ran that project when I measured this. paperclipai/paperclip#18738 now runs it. **Expected behavior** The server typecheck checks these files, and a type error fails the check. **Steps to reproduce** 1. On the base commit, run `tsc -p server/src/__tests__/tsconfig.json --noEmit`. It reports 6,536 errors and needs 12.3 GiB. 2. Add a type error to any file in `server/src/__tests__`. 3. Run `pnpm --filter @paperclipai/server typecheck`. It passes. **Paperclip version or commit** I measured the error breakdown below on commit `8dfd632452`, with TypeScript 7.0.2. The branch now includes master up to paperclipai/paperclip#18865. **Deployment mode** Not applicable. This issue applies to development and CI. No production source file in the server changes. ### Error breakdown Each row adds one change to the row above. | Step | Total errors | Change | Cause | | --- | --- | --- | --- | | Config as committed | 6,536 | | | | Add `src/types/*.d.ts` | 4,447 | -2,089 | Config. The Express request types were missing. | | Set `rootDir` to the repository root | 2,436 | -2,011 | Config. | | Set `allowImportingTsExtensions` | 2,181 | -255 | Config. Vitest accepts `.ts` imports. | | Add `ES2024.Promise` to `lib` | 2,138 | -43 | Config. Node 24 has `Promise.withResolvers`. | | Set `allowJs` for `.mjs` imports | 2,148 | +10 | Config. It removes 8 `TS7016` errors and shows new real errors. | | Set `declaration` to false | 2,142 | -6 | Config. Tests emit nothing. | | Count only files in `server/src` | 2,058 | -84 | Other packages: 53 Daytona, 29 Runner test, 2 UI. | So 4,478 of the 6,536 errors (69%) came from config or scope, and 2,058 are real type errors in 314 files. The 29 Runner test errors are also real, which gives 2,087 errors. Tests that master added after this measurement had 81 more errors, so this pull request fixes 2,168 errors. This table classifies the first 2,058 errors. | Kind of real error | Errors | | --- | --- | | Wrong argument or assignment type | 1,023 | | Stale or partial fixture objects | 525 | | Property that the type does not have | 317 | | Missing narrowing of null or unknown | 101 | | Implicit any | 60 | | Missing name or module | 16 | | Other | 16 | ### What the type errors hid Most errors were stale fixtures and loose mocks. These errors hid real test problems, and this pull request fixes them: - **A test that never ran.** `instrumentation.test.ts` required `sdk-trace-base`, which is not installed. So 3 span tests were skipped. They now run and pass. - **Assertions that could not fail.** - `issue-thread-interactions-service` used a company ID as an issue ID. - `status-card-evaluation-work` compared `[]` with `[]` in a rollback check. - `slack-conversation-lifecycle` read `item.issueId`, which does not exist. - `email-channels` used a permission key that does not exist. - `heartbeat-project-env` imported `LOW_TRUST_REVIEW_PRESET`, which is not exported. The value was undefined. - **Postgres processes that did not stop.** 11 test files called `stop` on the test database helper. That method does not exist, and the helper method is `cleanup`. - **Arguments that the service ignored.** - `methodKey` is now `connectionMethodKey` in the Daytona, Unikraft, 1Password, and Railway tests. - 108 calls passed `"owner-user"` to a parameter that expects an options object. - 9 chat wizard fixtures passed `managementContext` as `source`, so they ran `existing_app` and not `manifest`. - 2 tests passed a `{ userId }` actor that the function ignores. - Inserts into `environments` passed a `companyId` column that the table does not have. - **Problems in tests that master added during this work.** - `sandbox-creation-operations` read `database.connectionString` when an external test database was set. In that mode `database` is undefined, so the fixture would stop with a TypeError. It now uses the external URL. - `idle-completed-history` set a Dot operation to `dispatched`. That is a Muse status, and the Dot type does not have it. The fixture now uses `admitted`, which is a real in-flight Dot status. ### Possible product problems, not changed These may be real problems in production code or types. I did not change them, because this pull request does not change production behavior: - `decisions-service` `service.create` does not validate the lenient `cancel_issue_tree` input. - `createConnection` ignores `input.connectionPurpose`. - The `createConnection` route schema default stores `{}` for `transportConfig`. - `prepareManagedAiRuntime` accepted the invalid value `mode: "connection"`. - `createBinding` accepts invalid `projectionClass` strings outside class 3. - `ensureManagedProjectWorkspace` forwards an untyped `repoRef` by spread. - `routineVariableSchema.label` is optional, but `RoutineVariable.label` is required. - `ToolRunContext.projectId` may be too strict. - `withdrawInteraction` reads `issue.status`, which its type omits. - `issueService.list` and `reconcileNativeFinalizations` omit fields that they return at runtime. - `createGitHubExternalObjectProvider` handles `tokenProvider: null`, but its type forbids this value. ## What Changed - Fixed the 2,168 type errors. The diff changes 322 test and helper files. - Corrected `server/src/__tests__/tsconfig.json`. Editors and the typecheck now read the same options and report the same errors. - Added three `test-tree` layers to `server/scripts/typecheck-layers.mjs`. They read the server layers as declarations, and any error fails them. A hash of the path selects the shard, so a new file does not move other files. - Added `server/scripts/typecheck-stubs/daytona-sdk.d.ts`. Server tests reach Daytona plugin source, and the root install does not have `@daytonaio/sdk`. - Changed two imports in `ui/src/lib/issue-execution-policy.ts` to use `.js` extensions, because server tests import this file. - Made `declarationsConfig` and `--declarations-only` skip the `test-tree` layers, because these layers emit nothing. Other projects read only the source layers. Added a test for this. - Updated `doc/DEVELOPING.md`. ## Verification Run these commands: ```sh pnpm --filter @paperclipai/server typecheck pnpm exec vitest run server/scripts/typecheck-layers.test.mjs ``` Results on macOS (arm64), Node 24, 16 cores. Each check ran after the merge of paperclipai/paperclip#18738 unless the row says otherwise: | Check | Commit | Result | | --- | --- | --- | | Server typecheck, `PAPERCLIP_TYPECHECK_LOW_MEMORY=1`, all 7 layers | `6e45a08573` | Exit 0, 0 errors, 62 seconds, peak 3.52 GiB | | `node scripts/typecheck-test-projects.mjs --low-memory` | `a3306bd13e` | Exit 0, 0 errors, 42 seconds, peak 3.25 GiB | | The same script with `--reuse-declarations` | `1b878aabc0` | Exit 0, 0 errors | | `typecheck-layers.test.mjs` and `live-recovery-work.test.ts` | `01db5634e4` | 90 passed. These include real compiler runs for a pass, a type error, and an invalid tsconfig. | | `tsconfig.declarations.json` after a full server typecheck | `0fb1e4fb0a` | It references only `below`, `cycle`, and `above`. No generated config names a `tsconfig.layers.json` file. | | Owned runtime test in `idle-completed-history` | `e8f2f448ac` | Passed, with the fix that master later replaced | | `idle-incoming-wake`, `plugin-idle-manager`, and the changed `chat-channels` test | `6e45a08573` | 30 passed | | Runner `native-execution.test.ts` | `eab4dcc1f4` | 114 passed | | The 19 server test files that changed since `eab4dcc1f4`, and `typecheck-layers.test.mjs` | `259737b700` | 4,275 of 4,277 passed. The 2 failures are in `chat-channels` and are in the list of 7 below. | The peak is the largest single process, from `/usr/bin/time -l`. Peaks for the server typecheck were between 3.42 GiB and 3.56 GiB across 8 runs. Peaks for the test projects were 3.25 GiB and 3.37 GiB across 2 runs. I did not measure a cgroup. **Runtime check of the fixes.** Types do not prove that a test still works. So I ran all 309 changed server test files, 11,929 tests, before the rebase onto paperclipai/paperclip#18737: | Result | Tests | Detail | | --- | --- | --- | | Passed | 11,913 | Includes the 2 tests and the 54 `dot-runner` tests that passed in a later run, as described below. | | Failed | 7 | The same 7 tests also fail on the commit before the fixes. | | Skipped | 9 | These tests have their own skip conditions: `sentry` 5, and 1 each in `bundled-plugin-registration`, `customer-success-cloud`, `onepassword-connection`, and `workspace-runtime-https-live-exercise`. | The 7 tests that fail with and without this change, on my machine: - 3 tests in `chat-channels` and `email-channels` stop with `ENOENT` on a `SKILL.md` file. The path is in the parent checkout, above the git worktree that I used, so I expect that the worktree is the cause. I did not prove this. - `workspace-instance-cleanup` compares `/private/var/...` with `/var/...`. This is a macOS symlink difference. - 2 tests in `git-reproducible-managed-checkouts` get `unknown_base_git_files` and expect `unpushed_managed_checkout`. I did not find the cause. - 1 more test in `chat-channels`, `materializes direct external-chat finals once`, gets `undefined`. I did not find the cause. CI is the check for these 7 tests. `ci / verify` passed on `eab4dcc1f4`. Failures during this work: - My fix to `agent-runtime-connector-access` changed an invalid permission key in the setup, but not in the assertion. The runtime check found this. I corrected the assertion, and the file passes. - `heartbeat-plugin-environment` failed one wait in the full run. It passed three times alone, so I think that load caused the failure. It can fail again under load. - `dot-runner` skipped all 54 tests in the full run because `cargo` was not on my `PATH`. It then passed 54 of 54 with the toolchain on the `PATH`. - My first `lib` value removed the default DOM types, and the error count went up by 375. I added the DOM libraries. - My Daytona stub with bare `any` left 48 errors, because generic helpers then inferred `unknown`. I added shapes that return promises. - One fix to `agent-secrets-routes` used `class_3_static_lease`, and the test failed. That class allows only specific paths. I reverted to `unclassified`. - `ci / General tests (server (8/12))` failed on `259737b700` because of the flaky port in `idle-completed-history`. paperclipai/paperclip#18853 fixed this test on master, so this pull request keeps that fix. **Audit of the diff.** I counted these patterns in added and removed lines, to find fixes that only hide an error: | Pattern | Added | Removed | | --- | --- | --- | | `@ts-ignore` | 0 | 0 | | `@ts-expect-error` | 0 | 1 | | `.skip` | 0 | 0 | | `as any` | 9 | 9 | | `: any` | 11 | 2 | | `as never` | 8 | 2 | | `as unknown as` | 35 | 4 | | `Promise<unknown>` | 16 | 5 | | `expect(` | 128 | 113 | No hunk removes more `expect(` calls than it adds. Three removals of test content were intentional, and I checked each one: - `muse-control` removed `signalToken`. Line 1012 already asserts that it is absent. - `merged-pr-confirmation-sweep` removed legacy aliases. Other tests cover them. - `heartbeat-workspace-branch-containment` removed a `finalize` branch that no test row can reach. Some partial fixtures stay unchecked through `as unknown as` and `Promise<unknown>`, mostly in `issue-agent-mutation-ownership-routes` and `issue-comment-reopen-routes`. **Accuracy of the check.** One program over the tree and the three shards reported the same errors at the same positions. Memory, as the peak of the largest process on one thread, was 3.93 GiB for one program and 2.43 GiB for the largest shard. I measured these two values before the fixes. Not run or not proven: - I did not run the full `pnpm test:run`, or a root `pnpm build`. I expect CI to run the full suites. - I did not run the 4 GiB container check, or the full `scripts/typecheck-low-memory.mjs`. The peaks above come from macOS, so they are not a Linux cgroup measurement. - I did not run the UI typecheck after the merges. - `workspace-runtime-https-live-exercise` is skipped, so its `cleanup` fix did not run. ## Risks - **A large diff in test files.** 328 files change. A pull request that edits the same tests can get merge conflicts. New tests on master can also add type errors before this merges. Any such error fails this check and needs a fix here. - **A higher cost for changes to source types.** A change to a type can add errors in test files that the author did not touch. The author must then fix them. This is the purpose of the check, but it is new work. - **Changed test behavior.** Some tests now run paths that they did not run before, such as the 9 chat wizard fixtures and the 3 span tests. They pass here, but they can be more sensitive to timing or to the environment. - **The Daytona stub can go stale.** The stub is written by hand. If the plugin uses a new SDK member, the typecheck reports an error until someone updates the stub. - **The release path.** `release-verify.yml` and `scripts/release.sh` run `pnpm -r typecheck`, so they now run this check. - **The tsconfig change.** The test transform reads `server/src/__tests__/tsconfig.json`. The options that I changed are for type checks, and the runs above passed. - **A gap that remains.** Tsconfigs in `packages/paperclip-runner` and in most sandbox provider plugins exclude `*.test.ts`. This check does not read most of those test files, so they can still drift. That work is separate from this pull request. > For core feature work, check [`ROADMAP.md`](ROADMAP.md) first and discuss it in `#dev` before opening the PR. Feature PRs that overlap with planned core work may need to be redirected — check the roadmap first. See `CONTRIBUTING.md`. ## Model Used Anthropic Claude Opus 5.5 (`claude-opus-5-5`) through Claude Code, with reasoning, tool use, code execution, and subagents. The runtime does not show the context window size. ## Checklist - [x] I have included a thinking path that traces from project context to this change - [x] I have specified the model used (with version and capability details) - [x] I have checked ROADMAP.md and confirmed this PR does not duplicate planned core work - [x] I have searched GitHub for duplicate or related PRs and linked them above - [x] I have either (a) linked existing issues with `Fixes: #` / `Closes #` / `Refs #` OR (b) described the issue in-PR following the relevant issue template - [x] I have not referenced internal/instance-local Paperclip issues or links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip` URLs) - [x] My branch name describes the change (e.g. `docs/...`, `fix/...`) and contains no internal Paperclip ticket id or instance-derived details - [ ] I have run tests locally and they pass (7 tests fail locally, with and without this change. See Verification.) - [x] I have added or updated tests where applicable - [x] I have updated relevant documentation to reflect my changes - [x] I have considered and documented any risks above - [ ] All Paperclip CI gates are green - [ ] Greptile is 5/5 with no open P2s, recommendations, or follow-ups - [x] I will address all Greptile and reviewer comments before requesting merge 🤖 Generated with [Claude Code](https://claude.com/claude-code) --------- Co-authored-by: Claude Opus 5.5 <noreply@anthropic.com> |
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DottaandPaperclip
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492d537340 |
fix(native): recover controllers across webserver replacement (#18343)
## Thinking Path > - Paperclip manages AI agents and their work. > - Native execution runs in a remote Runner while the webserver owns its controller. > - Encrypted PRP checkpoints and session snapshots already survive a webserver restart in Postgres. > - Ordinary warm and per-turn admission still needs local markers and supervisor metadata to find that state. > - Replacing the webserver with an empty native controller directory can therefore lose a usable retained session. > - This change adds bounded recovery metadata to the existing snapshot transaction and reconstructs local projections from the selected durable source. > - The benefit is native execution continuity across webserver replacement, with the existing ownership and agent lifecycle policies. ## Linked Issues or Issue Description **What existing behavior does this improve?** Native remote controller recovery and retained-session continuation during a webserver upgrade. **Subsystem affected** server/ — native runtime, checkpoint persistence, recovery scheduling and internal upgrade reporting. Product E2E qualification also changes. **Current behavior** Without both the local PRP marker and supervisor file, normal continuation can return before discovering the saved Postgres checkpoint. The snapshot already exists in Postgres, but its local reuse compatibility envelope cannot be reconstructed. **Proposed behavior** Select the existing durable source, validate its identity and ownership, restore its PRP state and supervisor projection, then use normal authenticated admission. Missing or inconsistent evidence holds recovery. It does not authorize fresh provider work. **Reason and benefit** A replacement webserver must recover active execution and later continue its retained session without the old server's native files. This is one component of deployment continuity. HTTP traffic switching, workspace storage migration and Railway rollout remain separate. **Breaking changes** No new public endpoint, schema migration or database pool. The private run-profile envelope is additive. Disk-independent rollback also requires a reader for the staged controller format and compact checkpoint part; the first production release containing these readers is the floor. Older file-backed sessions need an owner checkpoint or the bounded internal importer. **Additional context** Related foundations: #17401, #17916, #17254, #14621, #14622. The implementation contract and open acceptance gates are in [the dated plan](doc/plans/2026-10-30-native-controller-checkpoints.md). ## What Changed - Persist a versioned recovery envelope, at most 4 KiB, beside the redacted session snapshot in its existing transaction. Keep it out of public run projections. - Compare frozen admission separately from prepared attachment instructions during staged recovery, preserving exact template/identity/authority checks. - Bound the existing lazy checkpoint pool at three connections after measured two-slot burst backlog; keep request/renewal capacities and SQL operation counts unchanged. The tuning is a separate commit. - Discover and restore the exact selected retained source without local native markers. Preserve the 32-candidate window, progress barriers and current authority checks. - Fence snapshot and result writes. Acquire coordinator, issue and run locks in order and check expiry after lock waits. Combine snapshot ownership/read work into one statement. - Reuse existing recovery deadlines and drain/resume scheduling. Retained-owner waits preserve the original unstarted run and actual lease deadline. Stop, ownership and provider-progress fences precede deferral. Add bounded native evidence reporting, retained-source import and retention protection. - Admit a settled warm source with an authenticated idle goal-read suffix while retaining active-work and mixed-authority holds. - Permit lifecycle `turn.stop` checkpoints after accepted results under existing ownership fences. Claim the existing successor coordinator before retiring the old warm session, and stage shared attachments only after verified retirement. Preserve omitted isolated-home defaults and existing fresh skill-selection order during recovery without hiding real configuration changes. - Carry the exact durable six-field PRP binding during active recovery after a healthy warm handoff. Keep the Runner mismatch guard and preserve opaque attachment IDs. - Preserve an already verified active or idle warm process during remote preparation; revalidate its proof/liveness and retain later authenticated PRP attachment. Ordinary resumed leases retain suspension checks. - Drain retained source events under their original authority, reconcile immutable source accounting and block unknown source tool dispatch before target work. - Persist compact staged handoff intent through authenticated adoption and recover direct/listener command-loss windows without another Runner or duplicate attachment. - Rebuild suspended lifecycle receipts for resumed prepared tasks, and retry missing lifecycle reads after partial PRP materialization without overwriting contradictory evidence. - Add normal warm/per-turn diskless continuation coverage, real Postgres races and SQL-cost checks. Add a reproducible paired load workload. - Give only the explicit outage fixture a 15-minute provider idle window, with a red/green catalog regression preserving all production timing and lifecycle policies. - Publish the goal-less task-session pointer in the existing post-acceptance terminal checkpoint transaction, with current ownership, accepted-result, reset and newer-progress fences. Keep a private bound receipt so late completion cannot duplicate or resurrect publication. - Use a retained warm sandbox in the dedicated continuity fixture, and accept an exact output token followed by an explanation. Keep the strict identity oracle. - Extend the explicit Daytona cell to a five-minute active outage and another replacement after completion. Require retained provider identity, a new tool receipt and a useful follow-up result. Add an owned loopback Postgres E2E fixture for hosts that cannot start embedded Postgres. ## Verification **Merge recommendation — `fc68584ce6231a02e47ecd743f55b036ccea034f`: ready for the qualified native-controller component.** Full CI, fresh review, local application paths, controlled performance qualification and the strict live Linux/Daytona case pass. Independent resource cleanup is complete. Broader rollout, browser reconnection and the unexecuted transport/platform combinations remain integration gates. Integrated 484 passed full local recursive typecheck/build and ordinary active→completion→cache-loss→C component qualification. Fresh review then found a valid attached-wake failure: preparation appends attachment instructions before the verifier compares execution to the frozen admission. 9f4 fixes that by separately checking the pre-preparation admission and exact prepared execution. Both hashes are captured privately per admission; the full template, identity, configuration and authority checks remain. Its regression fails before the fix; 36 focused cases, 42 staged source/target cases and server typecheck pass afterward. The review thread is resolved. Exact-head full CI passes ([run 41168228822](https://github.com/paperclipai/paperclip/actions/runs/41168228822): 48 successful jobs, one intended skip); the complete `pnpm test:run` partitions are forced, with the five native suites in the Runner lane. This is not a claim that an unsharded local command passed. The fresh exact-head Greptile check succeeds with 5/5 and all six threads resolved. The original two-connection database comparison closes **steady PASS and burst FAIL**. Every relative CPU/WAL/request-p99 gate passes and all operations/ownership remain correct, but candidate arm 3 drains in 1,015.99 ms and baseline arm 4 in 1,059.67 ms against the unchanged 1,000 ms absolute gate. Those results remain failed. A separate 2→3→4→2 diagnostic reproduces drain times 1,051.57 / 956.79 / 882.02 / 1,065.72 ms: three is the smallest tested passing cap, and the repeated two-cap failure survives run-order/cache effects. Separately reviewable `fc68584ce6` changes the existing lazy checkpoint pool default to three connections. Request capacity stays ten and liveness two; idle release, shutdown fencing, transaction counts and pool count are unchanged. Thirteen DB lifecycle/cap tests and DB typecheck pass. Full recursive typecheck/build pass at exact |
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Nicky Leach
|
9e904ee519 | perf(server): overlap independent heartbeat preparation reads (#18372) | ||
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DottaandPaperclip
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0e15c92073 |
feat(skills): make managed content independent of web-server disk (#18334)
## Thinking Path > - Paperclip is the open source app people use to manage AI agents for work. > - Agents use installed skills and exact version pins during execution. > - Managed skills still depended on mutable directories on the web server. > - A replacement server could lose acknowledged edits or remove an unassigned skill whose directory was absent. > - This pull request makes immutable versions the authority for managed content and installed repository reads. > - The server can rebuild delivery files from durable content after replacement. > - This establishes skills readiness for ephemeral web servers. General server draining and workspace recovery remain separate work. ## Linked Issues or Issue Description **Subsystem affected** Skills services, shared contracts, database receipts, Skill Studio, and runtime delivery. **Problem or motivation** A fresh web server must discover, read, edit, and deliver protected installed skills using the same database, object storage, secrets, and supported application artifacts. It must not need its predecessor's files or process memory. **Proposed solution** Use `managed` ownership with a null source locator. Read installed content by immutable version. Prepare packages before a short publication transaction. Persist execution selections before materialization. Recover exact pinned runtime assets and reject deletion while active or recovering pins exist. **Alternatives considered** Reconstructing a mutable installed directory preserves the old source-of-truth ambiguity. Permanent dual writes create two competing authorities. This change uses one managed model after a bounded legacy conversion. **Roadmap alignment** This improves the existing Skills Manager, Studio, version history, and Cloud execution capabilities. The maintainer supplied the implementation contract. This does not add a separate skills product or deploy fleet changes. Related work: #18082 supplies immutable package storage. #17273 addresses edits outside the API for linked local skills; this PR keeps that source category separate. #2648 is a closed earlier ephemeral-filesystem proposal. ## What Changed - Add managed ownership and focused content publication and execution materialization modules. Keep the archive format and package storage tables. - Publish managed create, save, delete, fork, rename, restore, and catalog content with version checks. Add durable create receipts. Preserve file-save receipt responses. - Return file version identities. Keep Studio drafts after a conflict and provide an explicit reload action. A delayed reload cannot overwrite newer typing or navigation. - Persist exact runtime selections, including empty selections. Rebuild pinned assets and verify their admitted digests on a replacement server. - Preserve source access on forks and disconnected copies. Keep the existing workspace policy category for managed skills. - Add bounded conversion, eligibility, and independent verification phases. Load persisted Cloud configuration in the standalone CLI without seeding or changing it. Reject partial current versions against installed inventories; recover only complete saved content or the exact source. Document storage migration blockers and the compatible rollback floor. - Add separate-process PostgreSQL/S3 qualification and update domain, retention, policy, and UI regressions. - Pass the plugin worker manager into Studio execution, admit restricted `skill_test` mode through native Runner contracts, and preserve admitted scope across native and REST tools. Native tests cannot create ordinary tasks, browse company data, or use external tools. - Select the exact durable Studio revision even when unassigned or Beta skills is off. Persist Studio output and audit atomically with native task completion, preserving the result on replay. ## Verification - Final revision `13e8af480b88ba6fea5737bac4bd81104d604792` passed full CI: all 49 workflow jobs completed successfully ([run 41127396098](https://github.com/paperclipai/paperclip/actions/runs/41127396098)). This includes typecheck, test suites, Runner checks, browser checks and build. Greptile review 15 is 5/5 on that same revision, with zero unresolved threads. The PR is ready for review. - Local workspace typecheck and build passed after integrating master. Focused checks passed: 33 execution/completion cases, 52 Runner HTTP cases, 16 managed-content cases, 17 Studio cases, the new real-process CLI regression, map checks and UI token gates. The CLI regression proves inspection does not seed missing Cloud configuration. Server typecheck passed after that fix. - The independent-process PostgreSQL/S3 matrix passed through normal HTTP skill routes. It covers A → B → C replacement, lost commit responses, upload crashes, concurrent saves, binary contents and executable delivery. Metadata listing and warm selected delivery retain zero object downloads. Local timing measurements are recorded; they do not establish hosted latency. - Hosted A → B → C passed on the owned disposable test tenant with external Postgres, S3 and a real remote Paperclip Computer. Predecessor temporary homes were absent. C read and executed B's acknowledged managed save. New runs used repository v1 while v2 was installed. Hashes matched an independently checked exact upstream commit. - Compatible image rollback to `6518b323` passed. Studio retained the unassigned fork's C save. A fresh remote run executed the newer managed content and historical repository pin. The actual shell event confirmed expected hashes, stdout, exit 0 and mode 0555. - Runtime candidate `9200e3fcb4` deployed successfully ([Cloud run 41124147876](https://github.com/paperclipai/paperclip-cloud/actions/runs/41124147876)). The final Studio test delivered only the unassigned fork's exact v3, executed its script and persisted a successful output snapshot. Independent command-event inspection confirmed all three hashes, stdout, exit 0 and mode 0555. All 14 installations were version-backed. Independent verification checked all 25 versions: 23 remote objects, two bundled database snapshots, zero blockers. - The deployed image is `9200e3fcb4`. Later master integration, the client-only delayed-reload draft guard and the CLI bootstrap have separate automated proof. The CLI bootstrap was also exercised against the tenant's stored configuration and storage through the same read-only services. This PR does not claim that the deployed image is the final PR revision. - Live Studio checks exposed worker wiring, admission, access scope, exact selection and completion-publication gaps. They are fixed. Failed attempts remain in the evidence. The full local suite exceeded 80 minutes under host contention and was stopped. Later combined/isolated local attempts also timed out; they are not counted as passes. Full CI covers the integrated suites. Earlier CI found an obsolete restart-scope fixture, which was corrected and passed all 52 HTTP cases. - Reproduction and migration: [`doc/skill-ephemeral-web-servers.md`](doc/skill-ephemeral-web-servers.md). Source revisions, deployments, versions, run IDs, hashes and failure history: [`doc/plans/2026-10-30-ephemeral-web-skills.md`](doc/plans/2026-10-30-ephemeral-web-skills.md). ## Risks - Legacy conversion requires stopped admission and retired filesystem-authoritative writers. Pre-conversion binaries are not supported rollback targets afterward. - Cloud readiness requires remote object storage. Local provider receipts and provider mismatches remain blockers until objects are copied and verified. - Linked local sources retain filesystem semantics and are outside the cloud guarantee. - Cold reads still fetch the existing archive format. Warm runtime preparation retains the verified-cache path. - Bundled reconciliation preserves an installed head. Existing release snapshots remain selectable. An older server must not replace a newer head with its shipped files. - No production volumes, fleet defaults, or general deployment coordination change in this PR. ## Model Used OpenAI Codex, GPT-6 family, with reasoning, repository tools, code execution, and browser use. The exact backend model ID and context-window size are not exposed in this session. No subagents were used. ## Checklist - [x] I have included a thinking path that traces from project context to this change - [x] I have specified the model used (with version and capability details) - [x] I have checked ROADMAP.md and confirmed this PR does not duplicate planned core work - [x] I have searched GitHub for duplicate or related PRs and linked them above - [x] I have either (a) linked existing issues with `Fixes: #` / `Closes #` / `Refs #` OR (b) described the issue in-PR following the relevant issue template - [x] I have not referenced internal/instance-local Paperclip issues or links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip` URLs) - [x] My branch name describes the change (e.g. `docs/...`, `fix/...`) and contains no internal Paperclip ticket id or instance-derived details - [x] I have run tests locally and they pass - [x] I have added or updated tests where applicable - [x] I have updated relevant documentation to reflect my changes - [x] I have considered and documented any risks above - [x] All Paperclip CI gates are green - [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups - [x] I will address all Greptile and reviewer comments before requesting merge --------- Co-authored-by: Paperclip <noreply@paperclip.ing> |
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Nicky LeachandPaperclip
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4ff493fb40 |
feat(plugins): include managed skills for selected environments (#17774)
## Thinking Path > - Paperclip manages agents and their execution environments. > - Plugins can vendor company skills and provide environments. > - Environment tools need their instructions before the provider starts. > - Persistent computers also need those skills before any run begins. > - This change adds environment requirements to normal skill selection and lifecycle synchronization. > - Plugin names prevent ambiguity, and required skills take delivery precedence without deleting company data. ## Linked Issues or Issue Description **Problem or motivation** An environment can provide desktop tools while its agent receives no instructions for those tools. A first-run-only import also leaves idle computers without required skills. Same-name company skills can make provider discovery ambiguous. **Proposed solution** Let plugin environment drivers declare their managed `skillKeys`. Install missing requirements during lifecycle reconciliation or new-run preparation. Deliver updates through the durable runtime event journal. Give managed imports stable plugin names and report shadowed assignments. **Alternatives considered** ROM links do not make a skill a normal Paperclip selection. Polling duplicates the existing lifecycle delivery queue. Replacing a same-name company record would destroy independent data and assignments. **Roadmap alignment** This extends the shipped Plugin system and Skills Manager. The existing related-PR search found no duplicate contract. ## What Changed - Validate `environmentDrivers[].skillKeys` as unique references to the same plugin's managed skills. Require a ready, enabled plugin with `skills.managed` authority. - Resolve company-scoped skills before version capture. Preserve explicit pins, company edits, and saved recovery selections. Serialize concurrent first installs. - Allow lifecycle callers to request missing-skill installation through `agents.getRuntime`. Ordinary task and recovery reads do not install new declarations. Pass task-selected environment IDs through the SDK. - Add SQL migration `0378_environment_skill_runtime_hooks`. Required skill edits, effective default changes, environment changes, and plugin requirement changes enqueue durable runtime events. Reuse lifecycle delivery and retries; add no polling. - Import managed defaults as `plugin-<short-plugin-id>-<skill-slug>`, including the SKILL.md name. Preserve canonical keys. Keep same-name company records separate without counter suffixes. - Required environment skills win delivery over same-name company assignments. Preserve saved assignments and library content. Record shadowed and winning keys in run warnings, run snapshots, and plugin runtime state. Removing the environment requirement restores the ordinary assignment. - Document the contract for `driver: "plugin"`. Other drivers and plugins without requirements keep existing behavior. Existing managed copies retain edits and names until reset. ## Verification - Latest targeted local checks: environment skills (5), managed skills (9), heartbeat execution configuration (27), and SDK worker RPC host (23): **65 tests passed** (including the targeted schema-drift check). Disposable PostgreSQL exercised the migration, first install before any run, concurrent lifecycle reads, implicit edit events, inherited defaults, rollback, plugin requirement changes, shadowing, preserved records, version capture, and recovery. - Review follow-up also verifies case-insensitive/runtime-name aliases, recovery of a task-mentioned shadowed skill, preserved quoted/multiline YAML, and zero runtime events for repeated local-folder settings writes. - Migration numbering and safety checks passed. Whitespace and secret/PII scans passed. - Earlier targeted manifest validation passed (43 tests). No validator behavior changed in this follow-up. - Broad tests, typecheck, build and end-to-end verification passed in [GitHub CI](https://github.com/paperclipai/paperclip/actions/runs/40387647219) for current head `ce57f2a4d`. Greptile is 5/5 with no unresolved threads. The [commitperclip review check](https://github.com/paperclipai/paperclip/actions/runs/40387646208) also passed after restoring its required duplicate-search checkbox. - Earlier attempts found a SQL alias collision, an unparenthesized CASE expression, and fixture assumptions about bundled catalog rows and YAML quoting. These were corrected before the passing checks. The first broad CI run also exposed a schema-drift check that assumed every journal entry had a schema snapshot; it now reads the latest actual snapshot, so SQL-only migrations need no invented snapshot. A test callback replacement also affected an unrelated fixture; it was restored before the final passing execution-configuration suite. Sandbox runs could not start PostgreSQL; the reported database tests used local socket access. ## Risks - Apply migration 0378 before using the updated lifecycle contract. It adds trigger functions and event producers; it does not rewrite agent assignments or skill content. - Required environment skills take precedence over same-name assignments, including task-selected skills. Both library records remain. Run warnings identify omissions. - Company edits are preserved. Plugin upgrades do not reset installed content or rename existing copies. Explicit reset adopts current defaults. - Namespaced library slugs can be shared by distinct canonical records. Callers must use IDs or canonical keys when a slug is ambiguous. - No live provider request or deployment was performed. The downstream plugin must be built against this Core revision. Persistent-home synchronization retains its existing edit-conflict and retry behavior. ## Model Used OpenAI Codex, GPT-6 family, with reasoning, repository tools, and code execution. The exact model identifier and context-window size are not exposed in this task context. ## Checklist - [x] Thinking path and issue description included - [x] Model and available capabilities recorded - [x] Roadmap and related PRs checked - [x] I have searched GitHub for duplicate or related PRs and linked them above - [x] Public references only; no internal issue IDs or instance URLs - [x] Targeted local tests pass; broad verification delegated to GitHub CI - [x] New behavior covered and documentation updated - [x] Current-head CI green and Greptile 5/5 with no unresolved comments --------- Co-authored-by: Paperclip <noreply@paperclip.ing> |
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Nicky Leach
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e5c9e60c5a | Avoid session resets when reusing default task directories (#17419) | ||
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DottaandPaperclip
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813e808af4 |
Remove filesystem history authorization from workspace preparation (#16963)
Remove physical-root source/reader authorization and sticky directory classifications from workspace preparation. Preserve current task/run authority, app-record privacy, credential authorization, containment, and lifecycle/publication integrity.
Validate replacement selections against persisted new inputs and refresh verified checkout ownership so bounded reuse survives earlier workspace relocation. Add real PostgreSQL/Git regressions, a reproducible history-scaling benchmark, and documentation.
Full CI passed all 48 jobs and Greptile scored 5/5 at
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DottaandPaperclip
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06689c1b34 |
perf(skills): coalesce inventory before run cache locking (#16576)
Share each active company skill-inventory refresh before taking the version-cache lock. Read actor visibility under the lock and keep snapshot publication protected through durable run pinning. Preserve empty-selection behavior and the list API. Validation: 176 affected cases, full repository typecheck/build, fresh full CI/E2E, security and exact-head Apex 5/5 pass. The local six-reader latency experiment improves from 50.4s to 18.3s; live response latency is a separate acceptance check. Co-Authored-By: Paperclip <noreply@paperclip.ing> |
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Nicky LeachandPaperclip
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fa9f3f8a08 |
feat(runner): support preconfigured user homes for Codex and ACPX (#16486)
## Thinking Path > - Paperclip manages AI agents and their work. > - Runner launches the selected provider and keeps durable session state. > - Runner currently prepares private provider homes for each session. > - Operators can already have working login, skills, and MCP configuration on the execution machine. > - This PR adds an explicit mode that uses that existing setup. > - Runner keeps its task bridge and session ownership while leaving the user's configuration in place. ## Linked Issues or Issue Description **Problem or motivation:** Rebuilding a provider home is unnecessary when the execution account is already configured. **Proposed solution:** Add `homeMode: "preconfigured"` to Runner adapter config and runnerd transport options. Keep `"isolated"` as the default. Initially support native Codex and ACPX Claude. **Alternatives considered:** Continue copying user configuration into a private home, or add an approval workflow. Both add work outside this feature's scope. **Roadmap alignment:** This extends the existing cross-provider Runner. It does not add another runtime. Related work: #14056 covers managed Codex credentials. #14474 covers command environment delivery. This mode uses user-owned credentials and retains the existing launch boundaries. ## What Changed - Add a closed v7 launch contract for the selected home mode. Existing contracts retain their behavior. - Keep homeMode under operator control. Reject task overrides and agent-authenticated changes, including removal through replacements, adapter changes, or rollback. Ignore stored task values and exclude it from automatic hire inheritance. - Skip managed AI login, assigned-skill materialization, and external MCP setup in preconfigured mode. Preserve the Runner task/completion bridge. - Keep protocol state and provider lifetime fences scoped to the Runner session. Different sessions can share a home. - Fail preconfigured ACPX planning/read-only launches before provider admission until a read-only user-home launch is qualified. Use isolated mode or native Codex for planning. - Reject ACPX approval requests. Keep native Codex on `never`. Local permission rules and hooks remain effective. Initially require the default Runner ACPX `approve-all` setting; other Runner policies are unqualified in this mode and fail before launch. - Keep the internal ACPX bridge in a stable session namespace, preserving an existing user MCP server named `paperclip`. - Reject preconfigured ACPX Codex before launch until a session permission profile can enforce Runner-state denial. Remove the unprotected full-access mode switch; use native Codex or isolated mode for that model family. - Bump Pi to profile 23 because its attestation covers shared Runner source changed here. Preserve profile 22 for historical recovery, and update Docker/package verification inputs. - Fence recovery on mode and home bindings. Fail missing provider-history recovery without starting a replacement session. Exclude the external Codex home from backups and credential cleanup. - Discover remote HOME on the execution machine. Do not project controller HOME or XDG paths onto it. - Separate task instructions from Codex ACP isolation and update the generated provider digest. - Keep remote configured-environment manifests consistent when dropping controller paths. Preserve exact Claude model IDs through per-launch environment settings, without editing the user home or patching the provider. ## Verification - Targeted local checks cover native contracts and launch allowlists, user-config preservation, provider admission, permissions, session recovery, remote environment projection, heartbeat preparation, and operator-only configuration. Runner, shared, and server TypeScript checks and the Rust binary build pass; generated ACPX profiles are current. - Following the latest master integration, all 757 server configuration/executor tests and 115 Runner admission/recovery tests passed. Additional review-fix checks passed: 103 planning contract/host tests, 78 provider-backend tests, 95 route/preparation/inheritance tests, 43 task-validator tests, and 43 workspace-policy tests. Counts describe separate runs and can overlap. - The real pinned Claude ACP/SDK regression reproduces exact-model aliasing without the fix (`claude-sonnet-5-5` becomes `sonnet`) and passes with the fix. All 89 adapter tests pass. User settings remain byte-for-byte unchanged. - Localhost-only Claude SDK probes with synthetic credentials verify the private bridge runs, local `ask` reaches the existing reject callback, local `deny` blocks without a callback, and a user MCP server named `paperclip` remains available. No user model allowlist is required. - Review regressions cover fail-closed provider admission, saved-mode recovery before routing, controller-home path removal without configured-environment manifest drift, pre-launch rejection of unqualified read-only ACPX launches, and denial of task/agent changes to the operator-owned home mode. - Before rebase, `d4d4ee2aebe4cb88c4f4d9ef8e22fed4b36b87be` received standard Greptile 5/5 with no unresolved threads. Prior Apex findings are fixed and covered by regressions. No manual Greptile retrigger is requested for this rebase, per reviewer direction. - The prior PR head and master hit the same GitHub runner encoding crash in workspace-b on three PR attempts, including diagnostic logging ([prior PR CI](https://github.com/paperclipai/paperclip/actions/runs/38818474563/job/116714538405), [prior master CI](https://github.com/paperclipai/paperclip/actions/runs/38819528748/job/116712423193)). Rebased onto `origin/master` at `c3ffa3f0dd` to pull in its bridge-test index correction. The rebased head `edd153db410bea063b645e0000aa68649f287b00` passes all CI checks ([CI run](https://github.com/paperclipai/paperclip/actions/runs/38824676914)), including workspace-b. Greptile's automatic standard review is 5/5 on this exact head, with no unresolved threads; no manual review was requested. - Local workspace-b investigation passed 911 shared tests and 3,868 tests across the remaining 15 workspace projects. The catalog run separately hit an existing ignored `.agents/skills/design-guide/SKILL.md` description-budget violation in this checkout; that file is untracked, outside the PR, and left untouched. Repeating shared tests with CI reporting enabled also passed. - Rebase verification: the final Git tree exactly matches the previously reviewed branch combined with current master. All 192 Runner admission/contract tests, 61 server preparation/provider tests, and 68 bridge tests pass, as do Runner/server TypeScript and generated-profile checks. The real Claude adapter fixture hit an `ENOTEMPTY` cleanup race on its initial run; all 89 adapter tests passed on retry. - Apex on rebased head `edd153db` returned 2/5: ACPX Codex selected full access without enforcing Runner-state denial, and agent configuration replacement could remove the operator mode. Both are fixed in `26e14dbbf`. Preconfigured ACPX Codex is temporarily unqualified; re-enabling it requires session permission enforcement on thread/turn operations and a real filesystem-denial probe. The config guard covers effective replacements, adapter changes, and rollback while allowing ordinary agent merges and operator removal. All 190 focused Runner tests, 103 server tests, both typechecks, and generated-profile checks pass. Standard review and CI passed before the next Apex request. - CI on `26e14dbbf` passed 1,967 Runner-shard tests but hit the previously observed `ENOTEMPTY` fixture cleanup race after successful Claude model admission. `eb83284fb` adds bounded filesystem retries to that fixture's teardown; all 87 adapter tests pass. Assertions and production cleanup behavior are unchanged. Head `eb83284fb42ee19a15d9a93b106c1bbb07e1695e` passes all 59 CI checks ([CI run](https://github.com/paperclipai/paperclip/actions/runs/38829500857)) and standard Greptile at 5/5 with no unresolved threads. Apex also completed at **5/5** on that exact head ([Apex result](https://github.com/paperclipai/paperclip/pull/16486#issuecomment-6201559527)). All review threads are resolved, the branch has no merge conflicts, and the PR remains unmerged. - No live paid-provider or remote-machine smoke was performed. The lockfile remains unchanged under the repository's refresh-bot policy; local dependency installation resolved the changed patch hash. ## Risks This explicit opt-in grants Codex tools access to the execution home (read-only in planning), including credentials. Native Codex separately denies Runner-owned protocol state. ACPX Claude retains its existing provider trust boundary, and the isolated default is unchanged. Providers may refresh credentials and update their own metadata. User configuration can block tools or the completion reporter. Existing blocked results and failure diagnostics remain the recovery path. Edit the local settings and retry; no new approval workflow is added. External provider history remains on the execution machine and is not backed up by Runner. Remote HOME discovery requires `getent` and fails explicitly when unavailable. Other harnesses need separate qualification. The Codex ACP bundle digest changes. Existing sessions tied to the old bundle may need a fresh session. No database migration is required. ## Model Used OpenAI Codex, GPT-6, with reasoning and code execution. The exact runtime model ID was not exposed. ## Checklist - [x] I have included a thinking path that traces from project context to this change - [x] I have specified the model used (with version and capability details) - [x] I have checked ROADMAP.md and confirmed this PR does not duplicate planned core work - [x] I have searched GitHub for duplicate or related PRs and linked them above - [x] I have described the issue in-PR following the feature issue template - [x] I have not referenced internal/instance-local Paperclip issues or links - [x] My branch name describes the change and contains no internal ticket id - [x] I have run targeted tests locally and they pass - [x] I have added or updated tests where applicable - [x] I have updated relevant documentation to reflect my changes - [x] I have considered and documented risks above --------- Co-authored-by: Paperclip <noreply@paperclip.ing> |
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DottaandPaperclip
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67a9d5cc37 |
perf(runner): bypass skill cache waits for empty selections (#16498)
Native runs with no skill files no longer queue behind company skill-cache work. Preserve saved empty selections and the existing exclusion for selected and legacy operational skills. Verified with real PostgreSQL held-lock regressions, 20 distinct affected cases, full repository typecheck/build, fresh full CI/E2E/security and exact-head Apex 5/5. Hosted latency remains to be verified. Co-Authored-By: Paperclip <noreply@paperclip.ing> |
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DottaandPaperclip
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ebceb2a744 |
trace(server): time workspace, native setup and startup recovery (#16330)
## Thinking Path > - Paperclip manages agents and their work. > - The controller prepares workspaces before it starts a Runner. > - A slow run can spend 30–80 seconds inside the combined workspace phase. > - Startup recovery can also delay queued work for minutes. > - Native runs also have gaps before Runner startup and after the provider result. > - Existing traces do not identify the awaited steps inside those intervals. > - This change adds closed timing boundaries around the existing operations. > - Operators can locate the wait without changing execution or exposing content. ## Linked Issues or Issue Description **What existing behavior does this improve?** Operator-configured OpenTelemetry diagnosis of controller preparation and startup recovery. Related: #16178, #16236 and #16285 introduced the existing preparation timing and sampling contract. #16306 and #16312 reduce separate configuration and copyback work. **Current behavior** The workspace interval combines source resolution, trust checks, provisioning, database persistence, binding and repository admission. Startup awaits accounting and native recovery before queued work resumes, but neither has a separate duration. Native backend setup and post-turn cleanup also contain unmeasured awaits. CPU profiles and a fast database probe cannot identify which await is slow. **Proposed behavior** Record workspace steps and native controller setup and cleanup with the existing hashed run ID. Record startup phases as independent, operator-sampled root spans without custom attributes. Keep the same operation order, results, failures and authorization. **Reason and benefit** These boundaries distinguish source work, database writes, repository admission and restart recovery. This is a diagnosis change. It does not claim a response-time improvement or a solved latency budget. ## What Changed - Add 14 closed workspace step names around 16 existing awaits. Repeated updates and bindings produce separate spans. - Time startup tool reviews, gateway sessions, delivery-worker readiness, accounting, plugin readiness, native recovery, hot restart, orphan reaping, retries, queued work and goal recovery. - Time native GitHub setup, wake binding, backend construction, connector assignments, MCP discovery, tool authority, companion selection and binary resolution. Time selected post-turn GitHub, coordinator and instruction cleanup awaits. - Move preparation timing to a pure shared module. Keep the existing heartbeat import as an alias. Both heartbeat and native timing skip tracer lookup when the endpoint is unset or blank, including when another library registered a provider. - Tracing lookup, callback, status and end faults cannot repeat work or replace its value or error. - Add real PostgreSQL workspace timing coverage and silent no-op/fault controls. Update the tracing contract and paired run maps. - Keep span attributes closed. Startup spans add none; workspace steps use only the existing run hash. No commands, paths, returned records or exception messages are recorded. ## Verification - Diagnostic-gap baseline: the new real workspace test fails against the unchanged workspace implementation because the expected step spans are absent. It passes with the wrappers. - Final affected coverage: **804 distinct cases pass** across seven complete suites: 698 native-executor cases, 39 real PostgreSQL workspace cases, 61 timing/context/startup cases, and six execution-configuration integration cases. The final native and unit invocations pass with no selected skips. The workspace suite passed in the initial six-file invocation on the same final workspace source. - Preserve the initial six-file attempt as failed: **7 failed and 789 passed**. All seven errors occurred during embedded PostgreSQL startup. The log reports local macOS shared-memory exhaustion. A fresh 15-case database group passes, followed by the complete 698-case native suite. These runs overlap; do not add their counts. - The new native timing assertion fails against unchanged native code because the expected spans are absent. It passes with the wrappers and retains the credential-isolation assertions. - Full `pnpm -r typecheck` and `pnpm build`: passed on the final production source. Earlier nullable-closure errors are fixed with erased assertions inside existing guards. The failed attempts remain recorded. - Normalized AST comparison: removing only timing wrappers, timing imports/local handles and erased assertions restores the original workspace, startup and native executor programs. This checks call order and policy expressions; it is not live acceptance. - The expanded head first failed two configuration integration assertions because their test providers had no endpoint. Configure the endpoint explicitly in those two tracing tests, and restore it after each test. All six cases then pass with the original credential cleanup, redaction and exact span assertions. Production is unchanged by this repair. - The first PR head failed one unchanged attachment test at its 15-second deadline in CI. The complete 32-case attachment suite passes locally with that deadline. Do not label the failed CI attempt green. The expanded head needs fresh full CI. - `node scripts/check-maps.mjs`: passed, 35 areas and 176 capability IDs. `node scripts/storybook-catalog.mjs`: 283 files and 2,728 stories. Structural checks only; no browser, play or Storybook build claim. - `git diff --check`: passed. No added prose comments, lockfile changes or new 1,000-line crossings. - A duplicate full local test run was not started. Fresh exact-head full CI and E2E pass on `15a683bb2419960f611584f8c07cdcfc9ce3af0b`. All 56 check runs are successful or optional skipped. Superagent and legacy Snyk pass. Completed Apex review is 5/5 on this same head, with zero unresolved review threads. Commands: ```sh pnpm exec vitest run --project @paperclipai/server --maxWorkers=1 --fileParallelism=false server/src/services/native-runtime/native-session-executor.test.ts server/src/services/execution-preparation-timing.test.ts server/src/startup-recovery-timing.test.ts server/src/services/heartbeat/preparation-timing.test.ts server/src/services/heartbeat/preparation-timing-context.test.ts server/src/services/heartbeat/workspace-preparation.test.ts pnpm -r typecheck pnpm build node scripts/check-maps.mjs node scripts/storybook-catalog.mjs ``` ## Risks - Configured operators receive more spans. They still follow the configured sampler and exporter. - Startup spans measure the awaited phase, including remaining readiness waits. They do not measure earlier worker construction or a provider turn. - Workspace and native setup intervals overlap their containing phases. Do not add them to the parent duration. Native timing covers named awaits, not every statement or every error path. - These spans are not yet deployed or tested against a live latency run. No first-party Telemetry event, run-log write, schema or API changes are included. ## Model Used OpenAI GPT-6 through Codex, with tool use and code execution. The exact served variant and context-window size are not exposed to this task. ## Checklist - [x] I have included a thinking path that traces from project context to this change - [x] I have specified the model used (with version and capability details) - [x] I have checked ROADMAP.md and confirmed this PR does not duplicate planned core work - [x] I have searched GitHub for duplicate or related PRs and linked them above - [x] I have either (a) linked existing issues with `Fixes: #` / `Closes #` / `Refs #` OR (b) described the issue in-PR following the relevant issue template - [x] I have not referenced internal/instance-local Paperclip issues or links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip` URLs) - [x] My branch name describes the change (e.g. `docs/...`, `fix/...`) and contains no internal Paperclip ticket id or instance-derived details - [x] I have run tests locally and they pass - [x] I have added or updated tests where applicable - [x] I have updated relevant documentation to reflect my changes - [x] I have considered and documented any risks above - [x] All Paperclip CI gates are green - [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups - [x] I will address all Greptile and reviewer comments before requesting merge Co-Authored-By: Paperclip <noreply@paperclip.ing> |
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DottaandPaperclip
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21ee5c9c85 |
feat(sentry): add opt-in run failure reporting with saved run references (#16300)
## Thinking Path > - Paperclip is the open source app people use to manage AI agents for work. > - Agent runs retain execution results and output in the instance. > - Operators can report run failures to Sentry for investigation. > - A backend Sentry DSN currently enables those reports with no separate choice. > - A repair bot also needs the exact instance, company, agent, and saved run. > - This pull request adds an explicit reporting mode and authenticated run references. > - The benefit is that operators can investigate every failure on selected deployments while keeping other deployments quiet. ## Linked Issues or Issue Description **What existing behavior does this improve?** Optional server reporting of terminal agent run failures to Sentry. **Current behavior** A backend DSN enables run failure reports. Known account, quota, and connection failures are excluded. Reports omit company and agent references. Runs without a task are skipped. Tool-name collision errors omit the conflicting bindings. **Proposed behavior** Set `PAPERCLIP_SENTRY_RUN_FAILURES=unexpected` to retain the existing filters. Set it to `all` to report every failed or timed-out run, including known setup and quota failures. The default is `off`. Expected stops stay excluded. Each report supplies identifiers and API paths that a bot can use with its own authorized Paperclip connection. **Reason and benefit** Operators can enable broad failure reporting on one staging deployment. A bot can fetch the saved run, events, and logs instead of relying on a short error label or copying complete transcripts into Sentry. **Breaking changes** A backend DSN alone no longer enables run failure reports. Existing operators must set `PAPERCLIP_SENTRY_RUN_FAILURES=unexpected` to retain the previous policy. Ordinary server exception capture remains enabled by the DSN. Failure grouping gains the phase and original cause code when available. Refs #16281, #16297, #16298. These cover related tool discovery and failure diagnostics. This change retains their existing boundaries and does not depend on their open changes. ## What Changed - Add `off`, `unexpected`, and `all` modes. Missing and invalid values keep reporting off before diagnostic reads. - Keep the Sentry backend DSN and audited optional SDK requirements. - Include company, agent, run, and optional task identifiers. Include versioned paths for the saved run, events, log, and task. Add absolute run URLs only for a valid public HTTP(S) origin. - Report company runs without a task. Prefer the first-class issue binding when selecting the task reference. - Select saved native provider/model settings, timestamps, and original failure codes. Preserve gateway reason codes through redacted exception projection. - Group by error code, adapter, and available phase/cause. Keep run IDs and error text out of grouping. - Include the tool names and connection bindings in collision errors without copying tool schemas or provider metadata. - Document configuration, upgrade behavior, bot access, redaction, retention, and best-effort delivery. ## Verification - All 56 checks passed for `cccb47a721eaa1cc36e63278fc177b9101477541`. Two unrelated Storybook jobs were skipped by their path filters. No checks remain pending. - Complete [Paperclip CI run](https://github.com/paperclipai/paperclip/actions/runs/38591422284): passed. This covers general and serialized tests, Runner checks, browser E2E shards, typecheck, build, release-registry checks, canary dry run, and Docker checks. - Greptile reviewed that exact head: 5/5, with no unresolved threads or actionable findings. Superagent, Socket, and Snyk checks passed. - Local focused reporting, diagnostics, collision, and real SDK contract tests: 410 passed across five suites. This includes the external-wake filter in both reporting modes. - The audited `@sentry/node@10.71.0` tests use an in-memory transport. No events were sent to Sentry. - `pnpm -r typecheck` and `pnpm build`: passed locally after the final rebase. - `node scripts/check-module-boundaries.mjs` and `git diff --check`: passed. - The full local `pnpm test:run` command was stopped to avoid duplicating the complete CI shards. It did not finish locally. The full suite passed in CI. ## Risks - The new default disables existing run failure exports until the operator selects a mode. The upgrade setting is documented. - `all` can increase event volume and include known user-action failures. Secret redaction and diagnostic limits still apply. - Reporting remains asynchronous and best effort. This PR adds no durable delivery queue and does not install a bot or Sentry alert rule. - API references grant no authority. Existing company, private-task, and run-output checks still apply. Complete transcripts stay in Paperclip. - This changes optional Sentry error reporting. It changes neither first-party Telemetry nor OpenTelemetry span exports. It adds no database migration. ## Model Used - OpenAI GPT-6 through Codex, with reasoning, shell, file editing, and test execution. The exact backend deployment ID and context window are not exposed in this session. ## Checklist - [x] I have included a thinking path that traces from project context to this change - [x] I have specified the model used (with version and capability details) - [x] I have checked ROADMAP.md and confirmed this PR does not duplicate planned core work - [x] I have searched GitHub for duplicate or related PRs and linked them above - [x] I have either (a) linked existing issues with `Fixes: #` / `Closes #` / `Refs #` OR (b) described the issue in-PR following the relevant issue template - [x] I have not referenced internal/instance-local Paperclip issues or links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip` URLs) - [x] My branch name describes the change (e.g. `docs/...`, `fix/...`) and contains no internal Paperclip ticket id or instance-derived details - [x] I have run tests locally and they pass - [x] I have added or updated tests where applicable - [x] I have updated relevant documentation to reflect my changes - [x] I have considered and documented any risks above - [x] All Paperclip CI gates are green - [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups - [x] I will address all Greptile and reviewer comments before requesting merge --------- Co-authored-by: Paperclip <noreply@paperclip.ing> |
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DottaandPaperclip
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c80d93e14e |
fix(observability): time execution configuration steps (#16236)
Record optional execution-configuration timings before provider dispatch, with success, failure, sampling, cleanup, and silent-unconfigured controls. Co-Authored-By: Paperclip <noreply@paperclip.ing> |
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DottaandPaperclip
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473c80d13f |
Automatically import and update project repository skills (#16066)
Automatically import skills from new GitHub project repositories and update enabled sources in the background. Preserve project-derived access, saved selections, immutable execution versions and explicit pins; add legacy adoption, refresh and connection repair in Sources. Include durable scheduling and bounded work credits, production Storybook journeys, real GitHub-to-routine acceptance receipts and final-head CI/security/Greptile qualification. Co-Authored-By: Paperclip <noreply@paperclip.ing> |
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DottaandPaperclip
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914b70572c |
refactor(heartbeat): extract execution configuration (#15973)
## Thinking Path > - Paperclip is the open source app people use to manage AI agents for work. > - Heartbeat turns task, agent, environment, and account settings into an executable run. > - The executor still assembles scoped credentials and skill configuration inline between environment selection and session preparation. > - That phase has a clear input/output boundary, but credential acquisition must remain visible to cleanup even when later setup fails. > - This pull request extracts configuration assembly and immediately notifies the executor of acquired resources and redaction state. > - The executor retains admission, dispatch, and cleanup, with the same statement ordering and explicit busy-account deferral. ## Linked Issues or Issue Description **What existing behavior does this improve?** Maintenance of heartbeat execution. This PR follows #15969 and #15966, both now merged. The branch is rebased onto `master`; `git range-diff` confirms that the extraction patch is unchanged. **Current behavior** `heartbeat.ts` has 4,561 lines and 188,950 bytes. Configuration assembly mixes workspace overrides, secrets, managed AI preparation, and skill delivery into the executor. **Proposed behavior** `execution-configuration.ts` owns this preparation phase in 269 lines and 16,204 bytes. The executor calls it between environment and session preparation and retains immediate cleanup ownership. `heartbeat.ts` becomes 4,372 lines and 178,459 bytes. **Reason and benefit** The execution path exposes another named phase, with tests that exercise its effective configuration, resource lifetime, failure diagnostics, and busy-account result through public heartbeat dispatch. Related work: #11827 changes pre-dispatch secret refresh and #15355 changes GitHub delegation; this extraction preserves current policies. **Breaking changes** None intended. Public exports remain available, and the original helpers keep their modules. ## What Changed - Move configuration merging, scoped secret resolution, managed AI acquisition, runtime skills, connector instructions, and managed identity preparation into one typed module. - Notify the executor immediately when failure-redaction values, managed credentials, and identity redaction become available. Returning resources only after all preparation succeeds would lose cleanup on partial failure. - Preserve the live failure-secret getter for later runtime environment changes. Return an explicit deferred result for busy accounts. - Add four real-database characterization tests through `heartbeat.wakeup`, using actual credential files and cleanup with a fixture adapter. - Update the developer module map. ## Verification - Before extraction: all 45 tests pass across the new public-path tests and existing project-environment tests. - After extraction: 47 tests pass across execution configuration, project environment, and runtime skills. No skips. - Two additional real-process managed identity tests pass; nine unrelated cases are deliberately filtered out. - `pnpm -r typecheck` and `pnpm build` pass. - Normalized syntax comparison confirms the moved body and reconstructed executor match after accounting for immediate ownership callbacks and the explicit prepared/deferred result. - Isolated browser acceptance: 2/2 pass (3.9 minutes). A real process worker completes after Git recovery, with persisted stdout and matching final output byte counts. Persistent failures stop after three attempts. Both outcomes survive reload. The disposable server was shut down after verification. - All eleven new public-path characterization cases across the three-PR stack pass together on the final commit. - All 140 named public exports from the batch baseline remain available. - CI initially failed the legacy-continuation message browser case: periodic recovery escalated the issue, then queue admission cancelled the run with `execution_reconciliation_required` before configuration preparation. The unchanged predecessor shard passes, and the exact case passes locally (5 seconds in the browser). The original failing case passed on its single rerun (8.2 seconds), but GitHub then shut down the runner during a different test (`The runner has received a shutdown signal`). The separate infrastructure restart completed: 24 browser cases passed, with two existing optional cases skipped. Assertions and timeouts are unchanged. - Greptile: 5/5 on `27ab7e3df64c157ba1f00c5757db812ff7a4e5aa`, with no actionable findings. Hosted full-suite CI passes on this exact commit: all 54 check runs and the additional commit status are successful. - Merge preparation: all eleven characterization tests pass after rebasing onto `master`. Fresh full CI passes for `1758673f87eaa76a8b2c520eac4b631ada5d9ba1`: 55 successful checks and two optional Storybook skips, including all eight browser shards, typecheck, tests, and build. Greptile is 5/5 on this exact commit with zero review threads. All heartbeat source, tests, documentation, and browser assertions are identical to the previously reviewed final stack. ## Risks - A failure after AI acquisition must still remove the disposable credential home. The new public-path failure test proves actual filesystem cleanup and diagnostic redaction before the external reporting sink. - The baseline exposed an existing gap: arbitrary exception text in the local `run.error` field can contain a credential even though the failure reporter redacts it. This behavior is unchanged and merits a separate fix; the test does not claim the local error field is sanitized. - Account-busy deferral must return without dispatch while retaining its scheduled retry. The new test checks the durable run states. - Browser acceptance uses a real process fixture and disposable data, without live provider calls. ## Model Used OpenAI Codex, based on GPT-6, assisted with reasoning, code edits, tool execution, and verification. The exact deployment model ID and context-window size are not exposed in this session. ## Checklist - [x] I have included a thinking path that traces from project context to this change - [x] I have specified the model used (with version and capability details) - [x] I have checked ROADMAP.md and confirmed this PR does not duplicate planned core work - [x] I have searched GitHub for duplicate or related PRs and linked them above - [x] I have either (a) linked existing issues with `Fixes: #` / `Closes #` / `Refs #` OR (b) described the issue in-PR following the relevant issue template - [x] I have not referenced internal/instance-local Paperclip issues or links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip` URLs) - [x] My branch name describes the change (e.g. `docs/...`, `fix/...`) and contains no internal Paperclip ticket id or instance-derived details - [x] I have run tests locally and they pass - [x] I have added or updated tests where applicable - [x] I have updated relevant documentation to reflect my changes - [x] I have considered and documented any risks above - [x] All Paperclip CI gates are green - [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups - [x] I will address all Greptile and reviewer comments before requesting merge Co-authored-by: Paperclip <noreply@paperclip.ing> |