44 Commits

Include renames

Author	SHA1	Message	Date
DottaandPaperclip	492d537340	fix(native): recover controllers across webserver replacement (#18343) ... ## Thinking Path > - Paperclip manages AI agents and their work. > - Native execution runs in a remote Runner while the webserver owns its controller. > - Encrypted PRP checkpoints and session snapshots already survive a webserver restart in Postgres. > - Ordinary warm and per-turn admission still needs local markers and supervisor metadata to find that state. > - Replacing the webserver with an empty native controller directory can therefore lose a usable retained session. > - This change adds bounded recovery metadata to the existing snapshot transaction and reconstructs local projections from the selected durable source. > - The benefit is native execution continuity across webserver replacement, with the existing ownership and agent lifecycle policies. ## Linked Issues or Issue Description **What existing behavior does this improve?** Native remote controller recovery and retained-session continuation during a webserver upgrade. **Subsystem affected** server/ — native runtime, checkpoint persistence, recovery scheduling and internal upgrade reporting. Product E2E qualification also changes. **Current behavior** Without both the local PRP marker and supervisor file, normal continuation can return before discovering the saved Postgres checkpoint. The snapshot already exists in Postgres, but its local reuse compatibility envelope cannot be reconstructed. **Proposed behavior** Select the existing durable source, validate its identity and ownership, restore its PRP state and supervisor projection, then use normal authenticated admission. Missing or inconsistent evidence holds recovery. It does not authorize fresh provider work. **Reason and benefit** A replacement webserver must recover active execution and later continue its retained session without the old server's native files. This is one component of deployment continuity. HTTP traffic switching, workspace storage migration and Railway rollout remain separate. **Breaking changes** No new public endpoint, schema migration or database pool. The private run-profile envelope is additive. Disk-independent rollback also requires a reader for the staged controller format and compact checkpoint part; the first production release containing these readers is the floor. Older file-backed sessions need an owner checkpoint or the bounded internal importer. **Additional context** Related foundations: #17401, #17916, #17254, #14621, #14622. The implementation contract and open acceptance gates are in [the dated plan](doc/plans/2026-10-30-native-controller-checkpoints.md). ## What Changed - Persist a versioned recovery envelope, at most 4 KiB, beside the redacted session snapshot in its existing transaction. Keep it out of public run projections. - Compare frozen admission separately from prepared attachment instructions during staged recovery, preserving exact template/identity/authority checks. - Bound the existing lazy checkpoint pool at three connections after measured two-slot burst backlog; keep request/renewal capacities and SQL operation counts unchanged. The tuning is a separate commit. - Discover and restore the exact selected retained source without local native markers. Preserve the 32-candidate window, progress barriers and current authority checks. - Fence snapshot and result writes. Acquire coordinator, issue and run locks in order and check expiry after lock waits. Combine snapshot ownership/read work into one statement. - Reuse existing recovery deadlines and drain/resume scheduling. Retained-owner waits preserve the original unstarted run and actual lease deadline. Stop, ownership and provider-progress fences precede deferral. Add bounded native evidence reporting, retained-source import and retention protection. - Admit a settled warm source with an authenticated idle goal-read suffix while retaining active-work and mixed-authority holds. - Permit lifecycle `turn.stop` checkpoints after accepted results under existing ownership fences. Claim the existing successor coordinator before retiring the old warm session, and stage shared attachments only after verified retirement. Preserve omitted isolated-home defaults and existing fresh skill-selection order during recovery without hiding real configuration changes. - Carry the exact durable six-field PRP binding during active recovery after a healthy warm handoff. Keep the Runner mismatch guard and preserve opaque attachment IDs. - Preserve an already verified active or idle warm process during remote preparation; revalidate its proof/liveness and retain later authenticated PRP attachment. Ordinary resumed leases retain suspension checks. - Drain retained source events under their original authority, reconcile immutable source accounting and block unknown source tool dispatch before target work. - Persist compact staged handoff intent through authenticated adoption and recover direct/listener command-loss windows without another Runner or duplicate attachment. - Rebuild suspended lifecycle receipts for resumed prepared tasks, and retry missing lifecycle reads after partial PRP materialization without overwriting contradictory evidence. - Add normal warm/per-turn diskless continuation coverage, real Postgres races and SQL-cost checks. Add a reproducible paired load workload. - Give only the explicit outage fixture a 15-minute provider idle window, with a red/green catalog regression preserving all production timing and lifecycle policies. - Publish the goal-less task-session pointer in the existing post-acceptance terminal checkpoint transaction, with current ownership, accepted-result, reset and newer-progress fences. Keep a private bound receipt so late completion cannot duplicate or resurrect publication. - Use a retained warm sandbox in the dedicated continuity fixture, and accept an exact output token followed by an explanation. Keep the strict identity oracle. - Extend the explicit Daytona cell to a five-minute active outage and another replacement after completion. Require retained provider identity, a new tool receipt and a useful follow-up result. Add an owned loopback Postgres E2E fixture for hosts that cannot start embedded Postgres. ## Verification **Merge recommendation — `fc68584ce6231a02e47ecd743f55b036ccea034f`: ready for the qualified native-controller component.** Full CI, fresh review, local application paths, controlled performance qualification and the strict live Linux/Daytona case pass. Independent resource cleanup is complete. Broader rollout, browser reconnection and the unexecuted transport/platform combinations remain integration gates. Integrated 484 passed full local recursive typecheck/build and ordinary active→completion→cache-loss→C component qualification. Fresh review then found a valid attached-wake failure: preparation appends attachment instructions before the verifier compares execution to the frozen admission. 9f4 fixes that by separately checking the pre-preparation admission and exact prepared execution. Both hashes are captured privately per admission; the full template, identity, configuration and authority checks remain. Its regression fails before the fix; 36 focused cases, 42 staged source/target cases and server typecheck pass afterward. The review thread is resolved. Exact-head full CI passes ([run 41168228822](https://github.com/paperclipai/paperclip/actions/runs/41168228822): 48 successful jobs, one intended skip); the complete `pnpm test:run` partitions are forced, with the five native suites in the Runner lane. This is not a claim that an unsharded local command passed. The fresh exact-head Greptile check succeeds with 5/5 and all six threads resolved. The original two-connection database comparison closes **steady PASS and burst FAIL**. Every relative CPU/WAL/request-p99 gate passes and all operations/ownership remain correct, but candidate arm 3 drains in 1,015.99 ms and baseline arm 4 in 1,059.67 ms against the unchanged 1,000 ms absolute gate. Those results remain failed. A separate 2→3→4→2 diagnostic reproduces drain times 1,051.57 / 956.79 / 882.02 / 1,065.72 ms: three is the smallest tested passing cap, and the repeated two-cap failure survives run-order/cache effects. Separately reviewable `fc68584ce6` changes the existing lazy checkpoint pool default to three connections. Request capacity stays ten and liveness two; idle release, shutdown fencing, transaction counts and pool count are unchanged. Thirteen DB lifecycle/cap tests and DB typecheck pass. Full recursive typecheck/build pass at exact fc68584, with the matching server build stamp. The final paired native feature-cost comparison explicitly uses the **same cap-three policy and common current DB factory in both variants**; its baseline is controlled, not the unmodified historical cap-two configuration. Original gates and workload counts remain unchanged. The one strict Linux/Daytona case started at 04:40:56 UTC only after both new profiles passed; it passed on the first attempt with all 49 workflow checks. Independent cleanup confirms all three owned sandboxes absent, owned Postgres/controllers/observer gone, VM terminated, root volume absent and ephemeral SSH key/agent removed. **Final controlled cap-three qualification: PASS.** Baseline native implementation `59da15066a` and candidate `fc68584ce6` use the same current DB factory and checkpoint policy (request/liveness/checkpoint = 10/2/3). Eight 65-second ABBA arms cover 300 controllers and 10,000 historical tasks. All correctness, absolute and 10% relative gates pass; original cap-two failures remain unchanged. | Mode | DB CPU µs/op, baseline → candidate | WAL B/op, baseline → candidate | DB-request p99 ms, baseline → candidate | Maximum drain | | --- | --- | --- | --- | --- | | Steady | 542.40 → 554.83 (+2.29%) | 1509.01 → 1558.27 (+3.26%) | 107.11 → 111.90 (+4.48%) | 26.35 ms | | Burst | 1036.36 → 1063.11 (+2.58%) | 4153.12 → 4317.64 (+3.96%) | 103.736 → 103.841 (+0.10%) | 930.14 ms | Every matched arm preserves operation/statement/transaction counts, including 3,900 PRP and 3,900 snapshot transactions. All three actual pools are included; there are zero lost owners, missed lease deadlines, dropped operations or errors. Peak Postgres CPU is 18.31%/9.47% of two cores and memory 614.29/684.42 MiB (steady/burst). The benchmark uses one Node process simulating 300 controllers; it does not qualify two-webserver overlap, HTTP latency or hosted capacity. Its observer SQL contributes to measured database CPU. The original unmodified cap-two baseline is separately retained as failed; this cap-three comparison is explicitly controlled. The exact final-source 8/512/8,192-chunk test also passes: zero recovery SQL, transactions or changed rows in each text-only interval, zero idle SQL, seven lifecycle transactions and twelve changed rows per sample. Existing lease traffic remains separate. The final ordinary managed application replay passes active recovery, completion, native-cache removal and C continuation; its UNKNOWN local debug-daemon provenance and partial instruction-observer limits remain recorded. The live case uses the attested Linux producer instead. **Live qualification: PASS, one attempt, no retries.** Campaign `native-controller-retained-fix-fc68584ce6-ec2-20261031T044055Z` started 04:40:56 UTC on the exact final Linux webserver source; suite definition hash `12f9bb97823c1537e43f0398e7cddf39890f77bce7b413ca4dfd944f4a30e5d5`. The existing immutable image and attested Bookworm Runner artifact are unchanged. - A was SIGKILLed and its native cache discarded. B started after 300,149 ms, naturally acquired generation 2, authenticated at 316,624 ms and resumed at 317,682 ms within the original 420,000 ms grace. The same active run, Runner, provider PID/start fingerprint and one submitted/started/accepted turn were preserved; one final result/terminal and workspace finalization completed, with no retry/recovery action. - After active and queued completion, B was SIGKILLed and its native cache discarded again. C received exactly one ordinary task-comment API follow-up, completed a new tool and produced a useful reply while preserving native/provider/Runner identities. This closes the earlier failed post-C gate. A separate C OS-process PID field was not exported; the physical-PID proof is specifically A→B. - Four distinct results were accepted and published; all four finalizations committed at attempt 1, all four accounting-v2 projections settled, and the task-session pointer advanced to C. The coordinator independently checked these facts and all 49 canonical checks against the sanitized receipts. - Canonical cleanup passed and independent checks confirmed three exact sandbox 404s plus complete inventory/zero owned remnants, no owned PG or controller/observer processes, EC2 terminated, root volume absent, and the ephemeral SSH key/agent removed by 04:54:25 UTC. Live scope is classic remote Codex warm continuity with non-native storage dependencies available. Prepared-task completed B→C, full per-turn application disk loss, browser reconnection, two-server load and overall Railway/HTTP continuity were not live-qualified here. Earlier failed campaigns and the original cap-two burst failure remain failed historical evidence. A report-renderer cache setup failure was preserved; the normal sanitizer subsequently succeeded with an explicit cache path and a new output directory, without changing validators. The repair keeps retained events under their original six-field authority until persistence and accounting accept them. Unknown semantic effects stay unresolved. A compact staged target survives source bootstrap, cached-command delivery and authenticated handoff, including an uncertain commit response. Direct and same-guest-listener recovery require the verified original Runner and the exact endpoint. Target snapshot publication marks readiness in memory, with retirement coalesced into an existing command write. Headers contain only the staged descriptor/digest; a prequeue template is written once as a changed checkpoint part and then recovered from the existing command/receipt. No second session snapshot transaction, streaming SQL path, new pool or recurring idle scan is added. | Current repair gate | Evidence and scope | | --- | --- | | Source-tail regression | Real Runner protocol RED reproduced attachment rejection. Frozen core/transport pass five source-tail cases: source usage attribution, held persistence/no premature ACK, lost commit response plus cache loss, unknown semantic hold and accounting rejection hold. | | Handoff loss windows | Direct and listener modes pass queued/prepared/activated/completed boundaries (eight cells), preserving the actual Runner/provider process. Missing adoption proof and changed endpoints reject recovery. | | Compact storage | A 31 KiB attachment grant writes its separate part once, leaves it unchanged across source snapshots and removes it at queueing. Headers do not duplicate the grant. | | Accounting | 21 real-Postgres usage tests and 19 source-binding tests pass. Recovery hydrates immutable source receipts without resetting their producer or billing classification; conflicting/incomplete usage holds. | | Admission and malformed evidence | Driver 16, staged evidence 42, restart classifier 27 and source usage 19 focused cases pass. Four malformed-file regressions pass at d6a7, whose executor is byte-identical at 484, and server typecheck passes. Full executor file: 990 pass; 16 embedded-Postgres `initdb` setup failures before assertions, retained separately. | | Required checks | Exact fc68584 recursive typecheck and build pass locally, with matching server stamp. Forced full CI succeeds (48 jobs pass, one intended skip); all PR checks are clean. Maps/token gates pass for their unchanged source surfaces. Fresh exact-head Greptile is 5/5, all six threads resolved. | | Ordinary application path | Exact fc68584 managed component passes active recovery after natural expiry, completion, native-cache loss and ordinary C continuation. Production bytes match before/after; temporary fixtures restored and owned DB/services cleaned. UNKNOWN local debug-daemon/partial instruction-observer limits remain; the separate live case uses the attested Linux producer. | | Producer | Locked Bookworm build from exact 5b7 Rust tree d03e494217, equal to final fc68584 Rust source. SHA-256 65b8f8cfdd6099e9ad24f1ca154e8a260777269cc82f6e23c6e6a180c531eaaf; 38,515,328 bytes. Actual Debian 12 execution and live admission pass. Controller/admission/DB changes do not relabel the producer source. | | Historical cap-two comparison | Exact 59da baseline vs 5b7 candidate, 300 controllers/10,000 history, ABBA 4×65 s per mode, all three actual pools and real snapshots. Steady CPU/op 541.36→554.64 µs (+2.45%); WAL/op 1512.13→1560.99 B (+3.23%); DB-request p99 102.78→105.99 ms (+3.12%): PASS. Burst CPU/op +4.71%, WAL/op +5.29%, p99 −0.10% pass relative gates, but absolute drains above fail. Identical operation/SQL counts, zero lost leases/drops/errors. One Node process simulates 300 controllers; this does not qualify two-webserver overlap or HTTP capacity. | | Live acceptance | Strict final-source Linux classic Codex case passes 1/1 on attempt 1, all 49 checks. Active recovery within grace and useful retained C continuation succeed; four accepted/published/committed/settled outcomes. Independent provider, PG/process, VM/root and SSH cleanup complete. Prepared/task and broader rollout limits are explicit above. | **Historical qualification snapshot through `9eb9ac6`.** The head at this snapshot was `9eb9ac6f9e312f3ebe8040f5a7565e88ae8824f3`. Server and Runner package sources are byte-identical to `283e05ffaa`; the two later commits change the explicitly scoped qualification and its documentation only. It includes master through the storage-owner fix `45a3a92e6dc52d20923b9aa34a22fee2ec5443f9` (#18357). At that snapshot, CI/review passed but the strict post-C native recovery gate failed; the PR stayed draft and required another native repair. Prior `39a4343` CI and review passed, but its full live workflow failed; that grade remains unchanged. The first repaired `435ccd2` live attempt failed before any injected outage. It exposed a legitimate terminal snapshot before result acceptance; no accepted result ID or publication receipt was observed. Its canonical report remains 0/1 `candidate_failure`, with cleanup passed and independent provider absence confirmed. `0862062` defers publication until result acceptance and fixes the fresh review's coordinator/issue lock-order finding. Both failures have deterministic real-Postgres regressions. The `0862062` live attempt then proved accepted-result publication but failed active recovery: a resumed-lease preparation guard demanded suspension after the exact live Runner was already verified for adoption. `64c0b746` preserves that verified active/idle-warm process, revalidates its proof/liveness, and keeps ordinary suspension checks and later PRP authentication. Its live run passed preparation but exposed a second active-warm boundary: all durable binding fields matched except opaque turn/item attachment IDs, which the server had regenerated. `7a203274` carries the complete verified six-field binding and keeps the strict Runner mismatch guard. Its cloud case then passed active adoption, completion, publication and accounting. The queued continuation exposed accepted-result retirement writes and an implicit-home fingerprint drift; both are fixed with deterministic regressions in `39a4343` before this fresh full qualification. The prior live case exposed a real publication gap. A goal-less native turn could persist its accepted result and terminal snapshot before provider cleanup, while the task-session pointer was still empty. Normal later admission then selected a fresh session. The fix publishes that pointer and a private bound receipt in the **existing post-acceptance terminal checkpoint transaction**, before cleanup. Earlier terminal observations persist without a handled receipt or continuation pointer. No result-acceptance or snapshot transaction was added. The late completion path recognizes the receipt. This also prevents a late callback from restoring a pointer after a user reset. Goal/control publication keeps its existing owner. The dedicated Daytona fixture now uses the existing warm/reusable environment. Its sandbox, Runner and provider storage must survive. The former generic per-turn fixture disposed the sandbox after completion and kept provider-history backup bytes under the discarded directory. Whole per-turn disk-loss acceptance therefore has a separate provider-backup storage dependency. It remains distinct from the passing native per-turn component checks with backup storage available. The 60-second lease, 300-second outage and 420-second grace are unchanged. | Gate | Current repair evidence | | --- | --- | | Assembled regression | Baseline fails with an accepted result and terminal snapshot but a NULL task pointer while real provider cleanup is held. The fix passes normal continuation and reset cases, with no pointer seeding. Exact merged `92b7447` passed 2/2 twice, including after normal package TypeScript output refresh. Production files are byte-identical at frozen `435ccd2`. | | Persistence and concurrency | 19 helper/transaction cases and all 59 existing control-port cases pass on `0862062`. They cover bound result IDs, reset/newer epochs, Stop, lock waits and expiry, receipt replay, missing stubs, foreign bindings and atomic 4 KiB rollback. Existing snapshot transaction count stays one. The new tests reproduce the exact live missing-result-ID error and the inverse replay/status lock order against `435ccd2`, then pass after the correction. Replayed results still reject stale generations. | | Completion | All 32 completion-boundary tests pass on merged `92b7447`; the source is unchanged at `435ccd2`. Native result-shaped session metadata is preserved. | | Qualification fixture | A valid review report reproduced three rejected correct replies. Exact token-boundary matching fixes them. 140 focused E2E/catalog cases and Product E2E typecheck pass. Wrong tokens, marker prefixes/suffixes and wrong authors remain rejected; retained-identity checks are unchanged. | | Required checks | Full recursive typecheck and standard build passed at `435ccd2`. Both exact commands also passed on `0862062`, with its exact server build stamp; both also pass on `7a203274`, with its exact server build stamp. Fresh `0862062` Greptile passed 5/5, with zero unresolved threads. The `64c0b746` normal CI then passed all 49 jobs (48 success, one expected skip) and Greptile passed 5/5 with zero unresolved findings. The `7a203274` normal CI also passed 48 jobs with one expected skip, with fresh Greptile 5/5 and zero unresolved findings. Current `39a4343` recursive typecheck and standard build both pass with persisted exit codes and its exact build stamp; fresh Greptile is 5/5 with zero unresolved findings. Its normal CI completed successfully: 48 jobs passed and one expected job skipped. The fresh live result remains separately failed. The `0862062` normal CI had 46 passing jobs, one expected skip, one worker communication failure and its aggregate failure; GitHub states the self-hosted runner lost communication. No failed assertion or specific OOM/spot cause was established, and no blind retry was used. | | PostgreSQL supplement | One corrected all-pool pair at the preceding repair passed 300-controller/10,000-history correctness and absolute gates. SQL 76,590→75,990; transactions 9,013→8,713; UPDATE rows 11,613 each; 300 correct pointer writes each. PG CPU 31.99→30.46 s, WAL 70.36→67.87 MB, request p99 100.98→103.12 ms. This is one pair, not a repeated improvement claim or an exact `0862062` CPU measurement. Its two later changes defer premature publication and reorder existing locks; they add no transaction, stream/idle writer, pool or timer. The first collapsed-pool attempt remains invalid and retained. This is not an exact final-head CPU/WAL measurement; later fixes change ordering, identity selection and in-memory skill replacement without adding snapshot transactions, pools, stream writes or idle SQL. | | Live publication proof (`0862062`) | Baseline run `06fcc806-f186-4190-9b57-087b61d75533` accepted result `58f912dc-94d9-4b4d-bd3d-d5f689c83fd3`; the publication receipt names the same result, the task pointer has parameters and `lastRunId` matches, and the normalized native identity matches the following active run. Accounting v2 settled. | | Active recovery (`0862062`) | **FAIL.** SIGKILL/cache discard at 23:07:28.666 UTC; hold 300,000.859 ms; B ready at 308,896.486 ms; natural generation-2 ownership at 312,906 ms. At about 319 s, preparation failed `runner_harness_state_mismatch: resumed_not_suspended`. No authenticated after-receipt passed within 420 s. Exact original Runner PID 668/start/fingerprint was independently still alive; provider auto-stop was 15 minutes. No retained C follow-up qualified. Canonical 0/1 `cleanup_failure`/cleanup-failed report remains failed; subsequent independent cleanup deleted all three owned resources with exact 404s and confirmed full intended-account inventory with zero owned resources. | | Verified adoption preparation (`64c0b746`) | 91 focused cases pass, including actual preparation for four active providers and a distinct prior/current warm proof. Unproved resumed state, dead process and stale warm owner remain rejected. The earlier options-only fixture missed this gate. No spawn, backup restore or PRP-authentication bypass was added. Server typecheck passes. | | Active warm identity (`64c0b746`) | **FAIL.** B claimed generation 2 at 312,995 ms. Preparation passed, then strict PRP recovery rejected the generated attachment IDs at about 319 s. The saved and desired Runner, lease, normalized session and run IDs matched; only `turn_attachment_…`/`item_attachment_…` differed from generated `turn-<run>`/`item-<run>`. Canonical 0/1 cleanup-failed report remains failed; independent cleanup confirmed deletion/404s and zero owned provider resources. | | Six-field identity repair (`7a203274`) | Actual server-factory regression RED4→GREEN38. A real Rust Runner test passes healthy first run → random-ID warm handoff → held active second run → restored controller. It verifies a new live authenticated connection, exact identity, same Runner/provider OS identities, no duplicate launch/turn, and no redispatch or invented receipt for an uncertain tool. The synthetic wrong pair still fails the unchanged guard. This protocol case does not claim business completion. Server and Runner typechecks pass. | | Active recovery/completion (`7a203274`) | **PASS for the active component.** Full five-minute SIGKILL/cache-loss hold. B ready at 308,936.651 ms; natural generation 2 observed 312,979 ms; authenticated at 317,720 ms and resumed processing at 318,527 ms. Same run `1e1ccb00-0728-4935-97da-57562d81cb42`, Runner `246f73f7-a689-4177-a9c2-7ce711d63aed`, remote PID 669/start 23:48:27.470, provider lease/session and one submitted turn. Accepted result `49097529-5310-4ac3-af95-5bf9b91d19f4`, publication, finalization and accounting v2 all settled. | | Full workflow (`7a203274`) | **FAIL, preserved.** Queued late-requirement run `5e61f38d-c7d1-4fc1-bcbf-bce9d46ce4eb` failed `runner did not durably suspend before checkpoint` before outage 2. Canonical 0/1 candidate failure, cleanup passed, evidence valid. C retention was not exercised. Independent provider absence, controllers/PG cleanup, EC2 termination and root-volume absence all confirmed; closed receipt SHA-256 `676a3b15eb9937b6bf995c36fb8666c88964d509e5ceb9109fb02da0aa2bc909`. | | Retirement and stable configuration (`39a4343`) | Real Runner + Postgres RED reproduced the exact suspension failure and nine owner rejections. `turn.stop` is now lifecycle checkpoint maintenance under unchanged owner/result/generation fences. GREEN25/25 proves actual persisted suspension, exact identity and completed stop/drain/suspend; unaccepted, foreign, stale and new-work negatives remain rejected. Two default-home fingerprint REDs become GREEN9/9; explicit mode changes still invalidate. No global matching exemption or historical fingerprint rewrite. | | Fresh full Daytona warm cell (`39a4343`) | **FAIL, preserved.** Launched 00:15:29 UTC with automatic retries disabled. Active adoption passed: actual offline hold 300,000.848 ms; B ready 309,922.155 ms; natural generation 2 at 311,821 ms; authenticated 317,989 ms; resumed 330,440 ms. Same run `3e126819-e786-4b3b-b923-c975cf4f5b79`, Runner `4079138a-8d7c-44a4-8558-07a5411d1f55`, PID 668/start and provider/session identities. Accepted result `08e504af-4dec-48a8-bf05-bf0a32280559` and publication passed. Queued run `31d168c9-7ab9-4700-abb6-fafb90912237` failed the same strict suspension error before outage 2. Its row selected a new native identity, but no new third provider process or invocation was observed. Recovery-time configuration still reset only `adapterConfig`; native provider, context and workspace subtrees were unchanged. Canonical 0/1 candidate failure, evidence valid, normal cleanup passed; all campaign provider/PG/process resources independently absent. Closed campaign receipt SHA-256 `5e7d6281c13c812f3a946667f97f3c7d339b5ad86a3a819bd185b2fa73bc4a19`; EC2/SSH remain temporarily held for the concrete follow-up repair. Original 60/300/420-second limits and strict queued/second-replacement checks remain unchanged. Direct-process path; no new live prepared-task claim. | | Native retirement authority (`283e05ffaa`) | Exact `39a4343` facade regression RED3→GREEN9. The successor now uses its existing production coordinator claim and prompt renewal before strict retirement. A real Runner/Postgres case starts in the actual native-observed/unclaimed phase, claims through production code, then closes and durably suspends the predecessor in 1.657 s. All 25 real-Postgres cases pass; unclaimed/foreign writers remain rejected. Shared attachment staging stays after retirement; Stop and denied claims neither close nor stage. No new claim or SQL path was added. | | Configuration continuity (`283e05ffaa`) | Real shared/project-primary environment selection → configuration with four skill versions reproduces `reset: true`, changed category exactly `adapterConfig`, after a Postgres JSONB read. Pinned restoration had reordered the generated preference while actual runtime skills stayed identical. Replacing existing pinned rows in place preserves the original fresh name/key order and fingerprint. The assembled regression passes, as do three existing pinned-version/rename/alias cases and server typecheck. Genuine model/skill-selection changes still invalidate. No fingerprint-format change or broad compatibility exemption. | | Final production repair (`283e05ffaa`) | Full recursive typecheck/build and [normal CI](https://github.com/paperclipai/paperclip/actions/runs/41151145106) PASS: 48 jobs plus one expected skip. Fresh review 5/5, zero unresolved threads. Live baseline, recovered run and queued continuation all succeeded, each accepted/published/committed once with accounting v2 settled. Their native/provider identities and configuration fingerprint match; both recovery and continuation report no reset, no changed categories and task-session reuse. Active outage/authentication remains within original timing. | | Browser-dependent continuation (`283e05ffaa`, definition 6) | **Whole cell FAIL, preserved.** After B was killed at 00:46:38.928 and its cache discarded, C became ready in 9,151.410 ms. `openParent()` then hit a 30-second `page.goto`/DOMContentLoaded timeout before posting the final request. No fourth native run or C continuation was exercised. Cause of navigation timeout is unknown. C task had no execution lock, queued comments, handoff or recovery blocker; all three prior runs were committed/accounted. Normal cleanup passed; independent provider absence, controller/PG cleanup, EC2 termination and exact root-volume absence confirmed. Sanitized report bundle SHA-256 `2a3b841d62efb2ae30ef14f96a431ac4fa7fe3a782f1144831512f78edc65022`. | | Native API continuation qualification (`9eb9ac6f9e`, definition 7) | **FAIL, preserved.** The real post-C API request dispatched run `c71fbb18-f979-4fe4-93ce-9c4be46dbf21`, which failed `native_session_interrupted` / `native_session_recovery_failed` at 01:10:00.640 UTC. It selected the same normalized native identity, Runner and checkpoint-provider identity as the three succeeded turns. No C result was accepted; pending accounting remains explicit. Active recovery passed: actual offline hold 300,001.098 ms, B ready 308,335.019 ms, natural generation 2 observed 311,818 ms, authenticated 315,540 ms, resumed 316,612 ms. Queued continuation succeeded/accepted/published. B was then killed/cache discarded at 01:09:34.500 and C ready in 8,783.803 ms. Original classifier `transient_infrastructure`, whole-case failure and cleanup passed are unchanged; that classifier does not establish the root cause. All owned provider/PG/process resources, EC2, root volume and SSH agent independently absent. Closed receipt SHA-256 `7f21ac4a22efc07b849fa7e17866083b6127b3321af12671b4fc054ce57039a9`; sanitized bundle `71ffef14a30a553e008320a31840a6d6c0de85c1bfdb60f783fdb53a6aae812a`. Exact backend detail is unavailable in approved structured evidence. | | Current required checks (`9eb9ac6f9e`) | Recursive typecheck, standard build and exact build stamp PASS. [Normal CI](https://github.com/paperclipai/paperclip/actions/runs/41152908417) PASS: 48 jobs plus one expected skip. Fresh Greptile 5/5, latest edited summary checked, zero unresolved threads. Exact8/512/8,192 stream probes again report zero recovery SQL/transactions/rows and settled-idle SQL; seven control transactions/twelve changed rows each, with 36 separate legitimate renewals in the longest case. CI success does not supersede the failed live C gate. | The completion supplement observed secondary request/liveness/checkpoint transaction p99 increases of 23.0%/45.7%/15.6% in its single pair. Renewal p99 stayed below 0.865 s, with 900 successful renewals per arm and no lost leases. The named pool caps stayed 10+2+2. An aggregate activity sample peaked at 15 non-observer entries without backend-type classification, so no claim is made that all were client connections. No sampled lock episodes does not establish zero lock waits. Twelve pure reader/selector cases also pass with the new adjacent receipt. This is not another executed process rollback. Development reader `5cf7aead` can parse the recovery state, but its old run-detail redactor can expose receipt IDs/outcome to an authorized run reader. The first production release containing recovery readers, complete attachment-identity handling and both private-field redactions is the rollback floor. The implicit-home fix prevents new recovery-time fingerprint drift; it does not rewrite previously stored fingerprints from failed candidates. The development probe is not a published supported rollback target. Latest actual `0862062` Runner tests independently passed 8/512/8,192 text chunks with zero recovery SQL, transactions and changed rows, plus zero settled-idle SQL. All three observed seven setup/control transactions and twelve changed rows. The 8,192-chunk case separately recorded 31 legitimate lease-renewal statements, with no lost lease. These are component SQL observations, not a production CPU/WAL claim. The new adoption and identity branches affect recovery preparation only. The `64c0b746`, `7a203274` and exact `39a4343` CI independently passed all three stream sizes with the same zero-SQL/idle result; each latest 8,192-chunk case recorded 36 separate renewal statements. Exact `39a4343` Runner 2/2 passed 133 files / 2,317 tests plus two skips; its separate native group passed 150 tests plus eight skips. The first API fixture revision omitted the mandatory final screenshot; this was caught before paid launch and allocated no provider/model work. The correction captures the actual retained Chromium page with an explicit unqualified-browser label, without changing the standard report validator. Automatic approval review rejected exporting raw private API/workflow snapshots because of sensitive payloads and insufficient destination-specific authorization. Sanitized reports and bound/hash-only receipts are retained; raw snapshots were not copied through another channel. This does not change the failed grade. Repair characterization also preserves its failed attempts. An unconditional staging relocation broke three existing same-scope scripted cases; the final implementation defers staging only for an actual superseded warm scope, and all nine order/race cases pass. One baseline transform overlapped an edit and is explicitly invalid; the actual immutable `39a4343` loader then produced the three genuine REDs. The independent task-directory hypothesis produced a RED but was excluded by the live shared-workspace evidence; no directory policy change was landed. A shared-workspace fixture authorization omission was corrected separately from the four-skill semantic RED. Setup failures are retained separately from semantic outcomes. These include an old host port after the owned Postgres fixture restarted and a sandbox-denied TSX IPC pipe. The supported external-Postgres run passed, and the final exact recursive typecheck passes with normal process permissions. Seven stale declaration errors after the master merge cleared after compiling the actual merged SDK/Runner TypeScript sources. No declarations were edited by hand. <details> <summary>Earlier qualification measurements and failed attempts (historical, before this repair)</summary> **Historical blocked gate (before the repair below).** Final native implementation is `abed921e12d543b62f57a56435419c0dafb0bc33`; current branch head is `af9e2d157dcc349e55374ad186c9be2d6cb96bf9`. The two later commits change only qualification fixtures, their matcher and documentation; `server/` and `packages/` are unchanged. It includes master through `fd008979f5794fda3d5f54151d36acd31d0de140`. The live Daytona measurement proves five-minute active recovery, once-only completion and accounting, but **fails retained-session identity after the second replacement**. The saved checkpoint and recovery metadata exist. The task-session pointer remains empty, and ordinary admission creates new native/provider sessions. The exact skipped publication boundary remains unproven. A useful saved-file result alone does not satisfy retained-session continuation. This application-path gap blocks merge independently of CI. A separate new-master CI failure is owned by the storage workstream (fix in #18357). No storage guard, session-identity oracle, lease/grace limit or provider result was relaxed. | Gate | Observed result and exact scope | | --- | --- | | Distinct source recovery and compatible rollback | PASS at A `5cf7aead09a2d9c7e2f2929d761f535ef3c1d798` → B `5ea45f8d17e33c9a62bd79982dcf0375b07733d0` → fresh B → A. Four controller processes, natural 60-second lease expiry, absent native projections before replacements, three succeeded/committed unique results, one provider thread, unchanged Runner identity, and strict idle cleanup. 177.782 seconds. | | Immutable installed native component | PASS at installed A `5cf7aead09a2d9c7e2f2929d761f535ef3c1d798` → installed B `eaef0d56552c087aaa4fa68a8655282ffbd12667` → fresh B → A. Each controller imports its contained compiled server and DB. Three unique committed results, stable Runner/thread, no extra provider restart on same-contract rollback, strict cleanup. 106.672 seconds. This is compiled component proof, separate from full CLI-native application acceptance. | | Normal public CLI startup | PASS for B `eaef0d56552c087aaa4fa68a8655282ffbd12667`, Node 24.22.1, darwin-arm64: fresh external DB, 415 migrations, health ready, root HTML 200, company POST 201 plus GET readback. The installed tree remained unchanged after execution. | | Five-minute component outage | Actual controller absence 300,168 ms. Natural generation-2 claim at 407.196 seconds after crash, same provider attempt and Runner, original run succeeded/committed. The larger 540-second case timed out before its retained follow-ups, so it is an active-adoption pass, not a complete four-controller pass. The complete short source/installed cases above independently cover follow-up and rollback. | | Drain/resume review regression | Fixed in `226f03e736d1ee99fea1762ab32ea3a8a9241c20`. Five facade-level cases pass: overdue normal/restart waits, future timer cancellation, another facade resuming the original owner, and transient retry. Against exact prior scheduler `5ea45f8d17e33c9a62bd79982dcf0375b07733d0`, four fail and one passes. The later head changes documentation only. | | Final corrected-fixture Daytona | **PARTIAL: active recovery PASS; retained identity FAIL**, exact live source `0b6afc499f`. A was SIGKILLed and native cache discarded; actual offline hold 300,000.375 ms. B was ready at 308,326.961 ms, naturally claimed generation 2 at 312,059 ms, authenticated at 315,996 ms and resumed processing at 316,519 ms, within the original 420-second boundary. The same run, Runner PID/start, session, lease and event prefix survived; one turn submitted. Original execution succeeded and settled accounting. After completion, B was killed and its native cache discarded; C was ready in 9,077.779 ms. C executed the saved project and returned correct `queue_r`, with all four runs succeeded/accounted. However, native and true provider-session identities changed: the unchanged retained oracle fails. No whole-workflow pass is claimed. | | Prior matched-producer Daytona | FAILED at exact `abed921e12`. The matching current-source Runner passed normal admission, completed the first task and settled its accounting. During the active revision, A was SIGKILLed and its native cache discarded. Actual offline hold was 300,000.727 ms; B was ready at 308,304 ms and naturally claimed generation 2 at 309,651 ms. At about 318 seconds, the remote process check reported `process_not_running` for the original admitted Runner. No authenticated after-receipt or retained follow-up passed. The current failure is preserved; no automatic retry, lease/grace relaxation, debt edit or provider replay is used. Bounded forensic read found preserved exact-bound state with no recoverable failure, a transport-reset diagnostic and no terminal delivery; this supports external process loss without proving the exact cause. The sandbox had a five-minute auto-stop policy, conflicting with the required surviving-sandbox assumption. Owned cleanup precedes the separate corrected-fixture case. | **Live retained-session boundary.** Prior completed run `3806…` and C follow-up `8adf1df3-6744-40bf-b35d-100451f29d9f` both have database session snapshots and `nativeControllerRecovery`. Their tool fingerprint, provider configuration, workspace descriptor, runtime-context digest, driver and work mode match. There is no recorded force-fresh/workspace-selection change, and this is an ordinary task rather than a conversation-generation reset. The same issue/agent task-session row has `session_params_json: null` and `last_run_id: null` from baseline time. Both native normalized UUID and actual provider session/thread hashes differ after C. Full application admission therefore did not select the retained source. No fallback to file execution or relaxed identity comparison is accepted as proof of continuity. **Independent cleanup completed.** Full current-account provider inventory confirms no resources owned by either final fixture, with exact-ID absence checks. Owned controllers and campaign Postgres are stopped/removed. EC2 `i-01551c09af098dde5` is terminated, its delete-on-termination root volume returned `InvalidVolume.NotFound` at 22:14:08 UTC, and the temporary SSH key/agent were removed. The canonical failed report and immutable oracle input are retained. Closed qualification receipt SHA-256: `b4b5fefce287ebfdbf2cc2238efaad62d8ad485aed0e9c0628ae95dbc18a8575`. **Original measurement and grader repair remain separate.** The C reply contains the requested marker followed by a newline and the correct output. The old workflow waited for one literal space, so its normal receipt collection stalled; that original attempt was closed and its canonical `cleanup_failure`/interrupted result is preserved. Commit `af9e2d157d` repairs only this reply predicate, with 144 focused cases, E2E typecheck, discovery and diff checks passing. Ordinary string matching stays literal. The corrected predicate accepts the saved reply, but the unchanged retained-identity oracle still fails. Pure active-recovery grading of the captured measurement passes 7/7; this is not a rewritten passing campaign. The sandbox idle-window conflict was corrected only for this explicit fixture (15 minutes). Actual baseline and later sandbox metadata confirm that policy; the original active box was disposed before a post-gate policy read, so its 15-minute setting is established by the normal create/environment configuration rather than an after-read of that box. Production native lifecycle and the 60/300/420-second constants remain unchanged. The development compatibility reader A is a genuine backport commit based on `59ff89a18fe1312b5f0bb908439bbdb1237b0252`, with the required idle-goal reader fixes. It is not a previously published release. Its older executor differs from B. The rollback floor must include this reader capability. The source component cases admitted the Linux ARM64 Runner packaged at `59ff89a18fe1312b5f0bb908439bbdb1237b0252`; the installed component case admitted the `5cf7aead` package. Their Runner bytes are identical: SHA-256 `b1f04caa1ce04e720dec7eb62ede170eb3621948c0849b8f305ea5c5116bced8`. Each admitted artifact remained unchanged throughout its case. [Final public package build](https://github.com/paperclipai/paperclip/actions/runs/41121460635) and [reader-floor build](https://github.com/paperclipai/paperclip/actions/runs/41122170506) both passed all four daemon builds, package assembly and both Darwin clean consumers. Both Linux ARM consumers failed before provider work with the same existing local Codex permission-profile error: bubblewrap attempts `activity.fifo/.git` and reports “Not a directory.” This matched baseline failure remains open; it is not a native remote continuity pass. Full post-run tree and build-stamp revalidation also passed after the compiled native case. The installed component trees are A `c29114c1bf71c5af00f761aeb9e3d84ed3d3075b9f5600dee3ef2543eb2b6ec5` and B `eda575505373a3bdc630fa4919862b359791fe3a7ef637961a25b73b38efe4b0`. **Controlled PostgreSQL qualification passed.** Baseline/candidate/candidate/baseline workloads used 300 controllers, 10,000 historical tasks, real snapshot/encrypted PRP writes and unchanged pools. PostgreSQL and client were each limited to two CPUs and 1536 MiB on an isolated eight-vCPU Linux host. | Workload | PG CPU per operation | WAL per operation | Database request p99 | | --- | ---: | ---: | ---: | | Steady | +1.18% | +1.81% | +1.91% | | Aligned burst | +3.40% | +2.56% | +3.81% | | Two logical servers | +3.11% | +2.56% | +9.68% | All arms passed absolute/correctness gates with unchanged control transaction counts, no dropped operations and no owner loss. Overlap p99 has little margin below the relative threshold. It uses two clients in one Node process, not two HTTP servers. [Closed measurements and limitations](doc/plans/2026-10-30-native-controller-qualification-evidence.json) and exact-source reproduction patches are retained. [Earlier contended-host failures](doc/plans/2026-10-30-native-controller-load-evidence.json) remain unchanged. The production DB-claim probe claimed 300 owners in 2.84 seconds and restored/committed controls and snapshots in 8.74 seconds, with zero owner loss or settled-idle SQL; its provider references were synthetic. The measured checkpoint/snapshot/renewal paths retain the same persistence behavior after integration; later accounting and business writes have separate owners. Actual Runner stream tests at `da8c7f6e1837ddd896dfe83a7524812fee813487` passed 8/512/8,192 chunks: zero recovery SQL, transactions and changed rows during text intervals; zero settled-idle SQL. Each retained seven control transactions and twelve changed records. Existing renewal SQL was measured separately. The guard/scheduler fixes add no stream path, pool or recurring idle scan. The live fixture used current-source producer SHA-256 `f0000c90cb83880191479da639201e659aa6ce0fc7d67c859faa172ec977849e`, a normal locked exact-head build with pinned Rust 1.97.1 in Bookworm. Actual network-isolated, read-only ABI execution passed (GLIBC requirement 2.34 against runtime 2.36). The immutable base image remained `ghcr.io/paperclipai/paperclip-daytona-runner@sha256:36069788f53c51f228764fa36180575443dfb5d1f84a342d7c0daceb28dc61cc`, source `a0ef3ce7`. This was an unpublished development producer, explicitly distinct from the base image and admitted before the fresh fixture began. The earlier host build failed ABI preflight before admission. The preceding old-producer fixture completed its initial task but lacked the usage-basis marker required by current master; it remained pending/unpriced and correctly paused. It was independently cleaned without debt or budget changes. Two preceding local Linux setup attempts OOM-killed before provider allocation, and their cleanup passed. These attempts remain separate from the final recovery failure. **Failures retained and resolved separately.** The earlier `98f05fc` probe rejected a valid settled PRP v2 goal suffix; `eaef0d5` fixed that reader and the fresh follow-up passed. Later component cleanup failures were traced by a scoped exception observer to the fixture adapter rejecting directory downloads. A bounded owned-directory transfer with exact-byte/mode preflight corrected the fixture; source and installed strict-cleanup cases then passed. No production guard was relaxed. The initial local integrated control-port run hit its 30-second embedded Postgres startup hook before executing 59 cases; 18 other focused cases passed. A bounded rerun used a fresh owned external Postgres fixture, applied normal migrations before Vitest, and passed all 59 cases with the original timeouts unchanged. Its container and data were removed; the failed attempt remains retained. The additional opt-in full Product E2E Vitest run is not green: 5,313 passed, seven failed and three skipped. An actual `abed921e12` archive with the same dependencies, Node and IPC permissions reproduces all seven failures with the same reasons. Five are unchanged workflow-policy/profile-pin assertions, including Pi profile version 37 versus the test pin 35. Two database suites failed during embedded Postgres startup before their assertions; semaphore exhaustion is confirmed in the observer log. The observer passes its supported external-Postgres rerun with original timeouts and source unchanged. The controller-database client-kill/postmaster assertions remain unexecuted after `initdb` bootstrap failure; no external override is supported. The unit launcher stopped before its Node-test phase, which was then run independently and passed 181/181. The original failed full run is preserved. These results remain distinct from the passing focused checks and normal repository CI. The first local Product E2E typecheck also encountered stale compiled Runner declarations; a genuine package-local TypeScript compile refreshed them and the unchanged check passed, without a dependency install or producer rebuild. Earlier [Daytona campaign 41108162900](https://github.com/paperclipai/paperclip/actions/runs/41108162900) failed at sandbox creation before any agent, with the underlying provider error unavailable. Its [sanitized report](https://d1p6rlowie26tp.cloudfront.net/runner-e2e/campaigns/gha-41108162900-2/index.html) remains a `cleanup_failure`. Both old creation names are absent in the current authenticated account, but the old CI account identity was not retained, so account equivalence is unproven. The subsequent exact `eaef0d5` source Product E2E attempt passed image/agent setup and the initial project, then held the controller offline for 300,003.7 ms. Its Mac supervisor failed owned-process inspection before B readiness; no adoption passed. Full current-company lease/label checks, provider deletion, exact-ID 404s and complete inventory confirmed cleanup of that attempt. Its local server and owned Postgres stopped. The prior AWS campaigns and database qualification VM were terminated with root volumes removed. The old admitted test Runner lacks the newer usage-basis marker introduced on master. The integrated component B turns retained unpriced, incomplete accounting obligations with `costAccountingPending: true` and no settled charge. The compatibility-reader A turn used its legacy receipt interpretation but likewise retained pending accounting and no settlement timestamp. This proves obligation preservation, not a whole-run accounting migration. Runner/receiver release ordering remains governed by the usage owner's contract. At native implementation `abed921e12d543b62f57a56435419c0dafb0bc33`, Greptile was 5/5 with zero unresolved threads and CI completed with 54 successful checks and five expected skips. At `0b6afc499f`, Greptile again passed 5/5 with zero unresolved threads, but CI ended with 51 successful checks, five skips and three failures. Server 9/12 fails a deterministic managed-skills maintenance assertion newly inherited from master `198218bf` in merge `c80e00ad`; that test is absent from the PR head, and the storage owner has the explicit-StorageService fix in #18357. Runner 2/2 passed 2,283 unit cases but its runner received a shutdown signal during the long stream probe; its cancelled step and aggregate failure are preserved. No blind retry was used. Current `af9e2d157d` checks are pending; the matcher-only change passes 144 focused cases and Product E2E typecheck. Earlier scheduling-sensitive CI failures and the interrupted unsharded local test run remain recorded in the dated plan. CI runs the repository's normal test partitions. Final verification does not claim Railway rollout, uninterrupted HTTP service or whole-webserver filesystem loss. </details> ## Risks - The task-pointer repair passes its assembled regression. The first live repair exposed pre-acceptance ordering and the fresh review exposed a replay lock-order issue; both are fixed and pass real Postgres tests at `0862062`. The following live attempt exposed the verified-running-versus-suspended preparation gate. Its narrow fix passes 91 focused cases at `64c0b746`. The next live case exposed synthetic attachment IDs; `7a203274` fixes that field selection and passes real Runner authentication. The subsequent queued continuation exposed strict retirement maintenance and a false default-home change; `39a4343` fixes both with real Runner/Postgres and fingerprint regressions. The `39a4343` live continuation failed again despite green CI. `283e05ffaa` repairs the actual native-observed admission ordering and reproduces/fixes the JSONB skill-order fingerprint drift. Both pass targeted real-Postgres regressions and the live active plus queued paths. The definition 6 post-C browser navigation timed out before admission. Explicit definition 7 now verifies native continuation through the ordinary comment API; its strict post-C native gate failed after a real dispatch and remains historical failed evidence. The final fc68584 repair now passes its fresh strict 49-check Linux/Daytona campaign; the prior failed grades remain unchanged. Browser reconnection is handed to its own workstream with the original failed evidence. No prior failed campaign is reclassified as passing. - Incorrect checkpoint/source binding or stale ownership could duplicate external work. Missing evidence remains a hold; existing receipt and finalization owners keep uncertain effects unresolved. - Recovery must retain maintenance writes after accepted results without allowing a stale business turn to write. Real lock-wait and generation tests cover that boundary. - The current two-connection paired burst profile fails its absolute drain gate in both baseline and candidate, despite passing relative load gates and all correctness checks. A causal capacity diagnostic selected three slots; the final controlled cap-three profiles pass unchanged thresholds. Full application replacement and two-server overlap capacity remain separate. There is no new streaming writer, pool or recurring idle scan. - The remote sandbox and Runner must survive the recovery window. Provider auto-stop is a separate lifetime bound from reconnect grace; the explicit qualification fixture uses a longer idle window. - Workspace and provider backup availability remain external dependencies. This PR does not certify whole-webserver filesystem loss, uninterrupted HTTP service or a Railway rollout. ## Model Used Implementation and initial verification used OpenAI GPT-6 through Codex; the initial hosted snapshot was not exposed. The follow-up qualification used three OpenAI `gpt-6.1-sol` workers coordinated through Codex, with repository tools, code execution, CI and scoped test infrastructure. Context-window size is not exposed. ## Checklist - [x] I have included a thinking path that traces from project context to this change - [x] I have specified the model used (with version and capability details) - [x] I have checked ROADMAP.md and confirmed this PR does not duplicate planned core work - [x] I have searched GitHub for duplicate or related PRs and linked them above - [x] I have either (a) linked existing issues with `Fixes: #` / `Closes #` / `Refs #` OR (b) described the issue in-PR following the relevant issue template - [x] I have not referenced internal/instance-local Paperclip issues or links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip` URLs) - [x] My branch name describes the change (e.g. `docs/...`, `fix/...`) and contains no internal Paperclip ticket id or instance-derived details - [x] I have run tests locally and they pass (focused and exact-source application/cost checks pass; full forced CI passes; earlier local embedded-PG setup failures remain recorded) - [x] I have added or updated tests where applicable - [x] I have updated relevant documentation to reflect my changes - [x] I have considered and documented any risks above - [x] All Paperclip CI gates are green (exact fc68584 full CI and auxiliary checks pass; forced complete test partitions) - [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups (exact fc68584 check and edited summary pass; all six threads resolved) - [x] I will address all Greptile and reviewer comments before requesting merge --------- Co-authored-by: Paperclip <noreply@paperclip.ing>	2026-10-31 07:33:52 -05:00
DottaandPaperclip	59da15066a	feat(runner): deliver native Kimi Code (#18391) ... Deliver native Kimi Code setup, exact models, scoped credentials, verified packages and runtime packs. Preserve current upstream release attestations and restore verified same-run remote retry dispatch without weakening process ownership. Co-Authored-By: Paperclip <noreply@paperclip.ing>	2026-10-30 22:26:15 -05:00
Nicky LeachandPaperclip	6174b4d7c8	fix(runner): allow session reset after confirmed task retirement (#18373) ... ## Thinking Path > - Paperclip manages AI agents and their work. > - Native warm sessions retain a Runner owner between turns. > - Closing that owner must stop execution and preserve valid recovery state. > - A failed suspension can leave a rejected close promise after the task has stopped. > - A session reset then retries that same promise and blocks every fresh session. > - This PR separates task retirement proof from checkpoint reuse for a new session. > - A reset can proceed after exact stop proof, completed handoff, and file collection. ## Linked Issues or Issue Description Refs #18011. That change preserves checkpoint authority during warm preparation. This change handles a stopped owner whose checkpoint cannot be reused. Related: #14695 covers managed files retained with warm processes. A search found no duplicate stopped-owner reset fix. **What happened?** A warm Runner can stop and complete its task handoff while close reports `runner did not durably suspend before checkpoint`. The transport caches that rejected close promise. Core retains the warm owner. Each session reset retries the same promise before it can launch a provider. A controller restart clears the in-memory owner and permits recovery. **Expected behavior** A reset to a new normalized session should release the old owner when its exact task has proved that execution stopped and its handoff completed. Core must collect stopped instruction files before it admits the new session. An unconfirmed owner must continue to block replacement. **Steps to reproduce** 1. Complete a warm native run through a plugin task provider. 2. Change configuration so Core retires the warm owner. 3. Let the task stop and complete, but fail durable suspension proof. Close keeps its rejected promise. 4. Reset the session and start another run on the same task environment. 5. Observe the old close error before any new provider work starts. ## What Changed - Keep a lease-bound retirement receipt in the plugin task owner. It requires `executionStopped: true` and successful task completion after credential handoff. - Accept an unrecoverable suspension error only during retirement for a different normalized session, with that exact owner's receipt and settled Core tool results. - Collect stopped instruction files before releasing the warm owner. Preserve old checkpoint evidence. - Keep same-session, active-owner, incomplete-handoff, unrelated-owner, unresolved Core tool results, and other close-error fences. - Report Core tool settlement on the close error after ingress retirement and drain. Default missing proof to false. Expose the error through the server's Runner shim. Add regression tests and document the recovery boundary. ## Verification - The reset regression fails with the new handling disabled and passes with it enabled. - Both affected suites passed: 1,032 tests. The final 15 focused owner/reset cases pass after adding the tool-settlement guard. - The assembled regression uses the real task-owner and backend binding. Its controlled task provider proves stop and completion. Close returns the same rejected promise on every call. - Negative cases cover incomplete handoff, other close errors, same-session continuation, provider change with the same session ID, unrelated receipts, unresolved Core tool results, and failed file collection. Collection can later succeed without replaying stop or reading the old checkpoint. - Five real-process transport cases pass. They cover an insufficient suspension deadline, the cached rejected promise, late tool completion within and beyond the deadline, interruption, and result-persistence failure. Unsettled callbacks produce `semanticToolsSettled: false`. - `pnpm -r typecheck` passed with the repository's pinned Rust toolchain on PATH. After the final contract change, Runner TypeScript build and server `tsc --noEmit` passed. - The local full-suite run was stopped at the requester's direction. Full regression and build coverage are delegated to GitHub CI. - Full GitHub CI passed on `ef0040d80af679ce6d4a130468e15f75678c1f4c`. Standard Greptile reviewed the same commit: 5/5, zero comments. Apex then reviewed that same commit: 5/5, zero comments. Final checks confirm no unresolved review threads and no merge conflicts. - Initial full CI on `00c002fd5a` failed one scheduled-retry route test at 18/20 cancellations. Controlled cancellation latency reproduced the short poll-budget failure. Before the next cycle, master advanced with #18322, which coordinates that test at the first completed batch. The separate local timeout commit was dropped during rebase. The upstream test passes locally. The rebased run passed 46 targeted owner/reset and scheduled-retry route cases. This PR has no scheduled-retry source or test diff. - No deployed provider run or tenant rollout is claimed by these source tests. ## Risks The exception applies only to a new normalized session and an exact completed plugin task. The old checkpoint remains evidence and cannot authorize reuse through this path. The original suspension failure can remain visible on its run. This fix prevents repeated startup failures after a reset; it does not hide unconfirmed cleanup or make every suspension succeed. Missing task receipts and failed file collection continue to block replacement. No schema migration, plugin protocol change, Rust Runner binary change, or new polling is required. Tests use a controlled task boundary; they do not certify every external provider implementation. ## Model Used OpenAI Codex, GPT-6 family, with tool use and local code execution. The exact runtime model ID and context-window size are not exposed in this session. ## Checklist - [x] I have included a thinking path that traces from project context to this change - [x] I have specified the model used (with version and capability details) - [x] I have checked ROADMAP.md and confirmed this PR does not duplicate planned core work - [x] I have searched GitHub for duplicate or related PRs and linked them above - [x] I have either (a) linked existing issues with `Fixes: #` / `Closes #` / `Refs #` OR (b) described the issue in-PR following the relevant issue template - [x] I have not referenced internal/instance-local Paperclip issues or links (only public GitHub references) - [x] My branch name describes the change and contains no internal issue or instance details - [x] I have run tests locally and they pass - [x] I have added or updated tests where applicable - [x] I have updated relevant documentation to reflect my changes - [x] I have considered and documented any risks above - [x] All Paperclip CI gates are green - [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups - [x] Greptile Apex is 5/5 with no unresolved findings - [x] I will address all Greptile and reviewer comments before requesting merge --------- Co-authored-by: Paperclip <noreply@paperclip.ing>	2026-10-30 13:57:12 -07:00
DottaandPaperclip	61bd4ac691	feat(agents): set up Antigravity with saved Google subscriptions (#18189) ... ## Thinking Path > - Paperclip manages agents and their work. > - Users choose providers and managed accounts while adding agents. > - Antigravity was missing from the ordinary additional-agent picker and its saved Google path did not complete native readiness. > - A user needs a successful Test, an enabled task action, and a stable account binding. > - This pull request connects the ordinary setup flow to the native candidate. > - It also preserves retired credential refreshes across database failures and server restarts. ## Linked Issues or Issue Description Built on merged #18188 and #18187. Refs: #12503, #14938 for related legacy CLI proposals. **Agent or provider** Google Antigravity ACP 1.4.3. **Why this adapter is useful** Users need to set up an Antigravity agent and run real work through their managed Google subscription. **How the agent is invoked** Native Paperclip Runner uses the pinned Antigravity ACP runtime. Exact operator admission remains required; the local candidate result does not enable general release. ## What Changed - Show Google Antigravity in the ordinary adapter grid and preserve the draft choice when setup resumes. - Reuse the same user’s saved personal default Google subscription and discover the exact low model through the native account. - Run a prompt-free native Test and wait for authoritative readiness before enabling task assignment. - Carry the managed account through native runs and recover retired refreshes through the existing encrypted, fsynced journal with exact generation checks. - Retain the latest rotated credential through verification, storage, and partial home-removal failures. Retry the exact account’s retained cleanup before another provider use. - Reconcile cleanup before taking the credential mutation lock, fence owners arriving during lock acquisition, and support nested lock holders without a join cycle. - Bound sign-in retirement outside database transactions and preserve claims for the existing cleanup owner; one pending sign-in does not block unrelated accounts. - Cover Gemini and Pi API-key recovery, keep API-key bulk manual-model editing usable, and keep adapter discovery available after candidate expiry. - Skip taskless native timer work before run or credential admission. Preserve current master monitor and deadline scheduling. ## Verification - The registered local saved-Google-subscription journey passed all 16 matchers in 196,520 ms using eval source `12aba` against actual serving source `4a37ee7c`. Both turns stayed in one conversation, produced exact downloaded files of 61 and 119 bytes after reload, and used distinct native primary processes. All observed owners retired, leases released, and credential fences settled. Independent readback confirmed Done work, no active owned runs, a connected saved account, and the retained agent paused for inspection. - The measured runtime is production-equivalent to pre-restack `65ef31dc` except its test-only transport fixture correction. Current-master head `ff7c9249` preserves all 99 product paths: 98 exact blobs and only eight inherited plugin-panel lines in `agents.ts`. Its native binary was rebuilt for inherited Codex-only diagnostic changes; the changed Rust behavior is outside Antigravity's ACPX execution path. Shared native/UI changes have focused regression coverage. The recorded live result is not represented as a measured replay of `ff7c9249`. - Full workspace build and typecheck passed on `ff7c9249`. All 376 focused tests in 14 files passed, covering Google credential/retirement controls and the inherited native-tool, redaction, route, and UI recovery changes. Token gates, maps, and diff checks passed. The required-close fixture was separately demonstrated red, then passed all 317 selected provider-wiring cases. - [Current-head CI](https://github.com/paperclipai/paperclip/actions/runs/40959387972) is green: 55 successful checks, two skipped workflow checks, and an optional neutral review check. Required `ci / verify` and `ci / e2e` passed. Greptile and Paperclip Review both report 5/5 on exact `ff7c9249`, with zero unresolved review threads. - This qualifies the selected operator-authorized local saved-subscription candidate. The original exploratory journey remains historical evidence; the repeatable fixed-driver eval is in the next PR. ## Risks - Google refresh recovery must preserve the exact grant, account, and credential generation. An uncertain native owner or failed encrypted handoff retains the private home and blocks cleanup. - A successful local saved-subscription candidate does not qualify fresh OAuth, API keys, Cloud, Linux, other models, or general release. - Timer filtering changes only taskless native Runner admissions. Existing task-bound monitors and legacy adapters retain their owners. ## Model Used OpenAI Codex (GPT-6). The host did not expose the exact model revision or context limit. The model used tools for code edits, tests, and review. ## Checklist - [x] I have included a thinking path that traces from project context to this change - [x] I have specified the model used (with version and capability details) - [x] I have checked ROADMAP.md and confirmed this PR does not duplicate planned core work - [x] I have searched GitHub for duplicate or related PRs and linked them above - [x] I have either (a) linked existing issues with `Fixes: #` / `Closes #` / `Refs #` OR (b) described the issue in-PR following the relevant issue template - [x] I have not referenced internal/instance-local Paperclip issues or links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip` URLs) - [x] My branch name describes the change (e.g. `docs/...`, `fix/...`) and contains no internal Paperclip ticket id or instance-derived details - [x] I have run tests locally and they pass - [x] I have added or updated tests where applicable - [x] I have updated relevant documentation to reflect my changes - [x] I have considered and documented any risks above - [x] All Paperclip CI gates are green - [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups - [x] I will address all Greptile and reviewer comments before requesting merge --------- Co-authored-by: Paperclip <noreply@paperclip.ing>	2026-10-29 16:51:50 -05:00
DottaandPaperclip	f8484a9f8d	fix(native): deliver selected skills to remote Codex homes (#18080) ... ## Thinking Path > - Paperclip coordinates company agents and preserves their assigned instructions and approval rules. > - Native runs pin an immutable skill inventory for each execution. > - Built-in remote Codex launches prepare that inventory on the controller, but transfer only authentication, configuration, and the separate context assets. > - Codex needs the selected skills under its isolated home. An explicit skill path does not load a skill outside its registered discovery roots. > - This pull request transfers the sealed selected inventory to the path already used by explicit skill inputs. > - Each launch replaces stale assignments inside the authorized workspace while preserving provider history. ## Linked Issues or Issue Description Refs #18025. The corrected first-task instructions exist in the selected bundle, but remote Codex must receive those bytes before it can follow them. The legacy skill resolver work in #16646 and #9323 uses different paths and does not repair native remote launch staging. **What happened?** A fresh remote native Codex run could not read its assigned first-task skill. It produced an approval question instead of the required confirmation. The Product E2E journey correctly rejected that question before child creation. **Expected behavior** Codex receives the selected immutable skill at the same provider-local discovery path used by explicit skill input. Removed or unassigned skills do not remain available after a new launch. **Steps to reproduce** 1. Prepare an isolated Codex home with one assigned skill. 2. Run the built-in remote launch staging path against a fresh remote filesystem. 3. Resolve an explicit invocation of that skill. Before the repair, its provider-local file is missing. ## What Changed - Transfer only the prepared selected skill inventory into the isolated remote Codex home before other launch writes. - Reject writable files, symlinks, missing entries, and extra unassigned packages in the controller projection. - Validate each provider-home path component below the authorized workspace. Reject redirected retained paths before deleting stale skills. - Create the private discovery root before native sandbox transfers, which omit the source-root metadata and can ignore the requested directory mode. - Replace stale or empty inventories without changing provider conversation history, preconfigured homes, other providers, or plugin-provided launch preparation. - Exercise the real home materializer and turn resolver through the existing test-only Runner surface. Document the remote discovery contract. - Synchronize an existing Telegram attachment-failure test with the durable provider-effect commit, preserving its required final states. This CI repair is a separate test-only commit. ## Verification - The new production-staging regression failed before the repair because the resolved skill file was absent. - All 23 focused staging checks pass. They cover delivery, file modes, empty/revoked inventories, history retention, extra packages, writable files, source symlinks, target symlinks, redirected ancestors on sandbox/SSH, and an authorized workspace alias. The filesystem fixture packs and extracts actual tar bytes without applying the requested root mode; it preserves exact projected-file digests and executable bits. - The unchanged materializer and prepared-launch contracts passed 26 tests. Eight selected native caller checks passed; other cases in that filtered run were not selected. - Independent probes used official Codex 0.160.0, the real materializer, production staging, the real resolver, and a local model endpoint. The original staging supplied no skill message. The final staging supplied the complete selected skill body with its exact SHA-256. A final probe also ran production Daytona `performSyncIn`, backing only its SDK exec/upload/chmod edge with the local filesystem under umask `022`: the pre-review source reproduced root `0755`, and the final source retained root `0700`, package `0555`, file `0444`, and the exact selected digest. All model requests returned local 403; there were no upstream requests or credentials. - Full local `pnpm -r typecheck` and `pnpm build` passed on verification commit `e7d4e7a9`, based on `60b8089a`. The full local `pnpm test:run` on that frozen tree was not completed: later embedded PostgreSQL startup failed because the host could not allocate semaphore sets (`semget`, SEMMNI/SEMMNS), and the owned attempt was stopped with its log preserved. Its earlier four caller-fixture failures and one workspace-conflict failure are recorded separately below; the later resource error is not an explanation for them. Delivery commit `567d838d` replayed the initial six-file patch onto `ee67d2ec`; production was last changed in `23456f51`, followed by test-only commits `002fa4a7` and `6e8fa595`. All 24 staging checks, all 26 materializer/prepared-launch checks, and the complete native executor file (968 tests, zero skipped) pass locally. Server typecheck also passed after these test edits. The complete CI matrix passed on `002fa4a7`; current-head CI is tracked separately. - Initial-head CI exposed four caller fixtures that manually wrote auth/config without preparing the skills inventory. The same four failures reproduced locally. Those fixtures now use the real home preparer for their existing empty inventory and assert its transfer; all 34 retained/replacement scenarios and the complete 966-test caller file pass. A sandboxed full-file attempt could not bind local PostgreSQL (`EPERM`); it was stopped with its log preserved, then the identical command passed with local fixture access. Initial-head CI also recorded timeouts in workspace recovery, approval-queue backoff, and heartbeat attribution. Their three complete files pass unchanged locally (102 tests); the next CI head also passed those cases. The original slowdown remains unexplained. The consequent approval cleanup foreign-key failure is a timeout teardown race already recorded in the owning worker documentation. - The frozen full local run also observed an existing workspace-conflict test fail. The test and owning workspace code are unchanged between the verification and delivery trees, and the isolated delivery case passes. The original failure remains unresolved: stopping the later resource-blocked run prevented the final assertion detail from being emitted. That isolated pass does not replace the earlier result. - CI on `23456f51` caught a Telegram test reading `provider_effect=processing` after observing the provider mock call. Production commits `processed` later, so the test now waits for the unchanged complete durable-state assertion. All 18 selected Telegram attachment/media cases pass (the other 1,670 cases were not selected). The same CI attempt also recorded an E2E runner shutdown followed by cancellation, without a failed Playwright assertion; the necessary new test-only head reruns the matrix. Earlier failures remain preserved and are not reported as passes. - Review requested an executor-level preconfigured-home negative test. Retained and replacement workspace cases now drive the actual launcher, assert successful context staging, and exclude the isolated home's skills/auth/config transfers. A counterfactual that removes only the executor exclusion makes both tests fail; the exact production bytes were restored before the complete 968-test pass. Flat and nested selected package delivery is also covered. Optional arbitrary remote-stderr expansion is deferred; the repair keeps the existing closed error code and report surface. - Final head `6e8fa595` passes the complete CI matrix, including typecheck, build, Runner, browser, and aggregate gates. Two first-attempt jobs were interrupted by runner shutdown/lost communication; one unchanged-head rerun of those jobs and their aggregates passed. The underlying host interruption cause remains unknown. Both current-head automated reviews are 5/5 with the implemented finding resolved. - The original checked-in lockfile fails a fresh frozen install on the baseline. The repository's maintained resolution-then-frozen sequence passes. No lockfile change is included. - Independent source review found and then verified the retained-ancestor guard. This PR does not claim that the full live Cloud onboarding campaign has passed. It changes no journey assertion or approval gate. ## Risks Launch preparation adds an asynchronous inventory walk, one bounded remote cleanup command, and one transfer of the selected skill tree. Those costs grow with selected files and bytes and occur only at provider launch. A failed validation, cleanup, or transfer prevents launch. Remote Node is already required by the shared SSH/sandbox launcher. The selected packages remain read-only; the private discovery root retains Codex's normal writable mode. No database, API, credential-routing, or deployment change is included. ## Model Used OpenAI Codex based on GPT-6, with reasoning, source inspection, tool use, and code execution. The host does not expose the exact serving model ID or context-window size. ## Checklist - [x] I have included a thinking path that traces from project context to this change - [x] I have specified the model used (with version and capability details) - [x] I have checked ROADMAP.md and confirmed this PR does not duplicate planned core work - [x] I have searched GitHub for duplicate or related PRs and linked them above - [x] I have either (a) linked existing issues with `Fixes: #` / `Closes #` / `Refs #` OR (b) described the issue in-PR following the relevant issue template - [x] I have not referenced internal/instance-local Paperclip issues or links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip` URLs) - [x] My branch name describes the change (e.g. `docs/...`, `fix/...`) and contains no internal Paperclip ticket id or instance-derived details - [x] I have run tests locally and they pass - [x] I have added or updated tests where applicable - [x] I have updated relevant documentation to reflect my changes - [x] I have considered and documented any risks above - [x] All Paperclip CI gates are green - [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups - [x] I will address all Greptile and reviewer comments before requesting merge --------- Co-authored-by: Paperclip <noreply@paperclip.ing>	2026-10-28 16:37:13 -05:00
DottaandPaperclip	567c043b17	feat(server): expose bounded hot-upgrade readiness (#18037) ... ## Thinking Path > - Paperclip coordinates agent work and keeps its authority in the server. > - Remote native runners can preserve execution through a server replacement. > - Deployment operators need evidence that current runs support that recovery. > - Process-local drain counters do not establish this fact. > - This PR adds an optional, operator-only readiness observation from existing records. > - A deployment consumer can use that report while the existing runtime retains recovery authority. ## Linked Issues or Issue Description Refs #17439. **What happened?** A deployment cannot distinguish recoverable remote native executions from runs that require a task drain. The existing status endpoint reports only process-local counts. **Expected behavior** An instance operator can request a bounded readiness report without stopping admission or exposing checkpoint material. Missing ownership or persistence evidence must prevent readiness. Ordinary status reads must keep their current cost. **Steps to reproduce** Run a remote native task. Read the task-drain status. It reports active work but supplies no recovery eligibility. Deployment code therefore has no affirmative signal to select an active-run handover. ## What Changed - Add `GET /api/instance/task-drain?upgradeReadiness=1` for instance administrators and existing Cloud control callers. - Return aggregate eligibility from current run identities, controller leases and bound opaque checkpoint headers. Unknown work, pending admission and incomplete reads prevent a positive report. - Bound the explicit read to 1,001 rows, encrypted headers of at most 256 KiB each and 8 MiB total, and a two-second SQL statement timeout in a read-only transaction. Keep ordinary status reads in memory. - Add PostgreSQL, count-transition and route authorization tests. Update the API contract, operator docs and access maps. ## Verification - All seven readiness cases pass against an isolated PostgreSQL 18 fixture. They cover missing checkpoints, legacy adapters, missing process/session identities, foreign owners, expired leases, missing lease tokens, failure state and in-flight work. The positive SQL fixture uses the real Runner checkpoint writer and encryption. Regular sandbox workspace identity and plugin environment-lease identity are tested with independent IDs. Stopped/released/undispatched plugin tasks and every mismatched identity field are rejected. Local/legacy/malformed/oversized or mismatched headers are rejected. A held PostgreSQL table lock proves the two-second cancellation budget, rollback/connection release and unrelated query responsiveness. - All 123 focused readiness, instance-settings and Cloud control assertion tests pass, including operator-only access and no readiness read on ordinary status requests. Runner’s 168 checkpoint tests pass. Runner and server typechecks pass after review fixes. - Workspace typecheck, full build, module-boundary and map checks passed locally before the master rebase. Current-head GitHub CI is now green, including typecheck, build, all grouped/serialized server and Runner tests, browser shards, policy and review-dispatch checks. Greptile completed cleanly at 5/5 for `f15fb0c7e9dfb975090cd5d791a1c8e6701275f8`; all actionable threads are resolved. - The broad local test run was stopped after the macOS embedded PostgreSQL fixture failed to bootstrap. The SQL test was then run on the isolated PostgreSQL fixture. No assertion or timeout was weakened. One unrelated existing route test exceeded its 15-second limit under concurrent local builds; it passed on one isolated retry and the subsequent whole route suite passed. - Hosted active-run upgrade acceptance has not run. This PR supplies an observation; it does not change rollout policy or establish live continuity by itself. ## Risks This is an instance-wide observation, so company members and agent keys must not receive it. A readiness snapshot can age as work changes; shutdown and startup retain their existing execution authority and fencing. The report does not validate a replacement artifact or authorize a schema migration. It decrypts only bounded headers through the checkpoint owner and delegates format/identity inspection to Runner; full journal restoration and physical sandbox authentication remain with recovery. No migration, recurring query, new checkpoint write or wire protocol change is included. The additive Runner header inspection contract reuses its existing parser. ## Model Used OpenAI Codex, based on GPT-6, with reasoning, source inspection, tool use and code execution. The host does not expose the exact serving model ID or context-window size. ## Checklist - [x] I have included a thinking path that traces from project context to this change - [x] I have specified the model used (with version and capability details) - [x] I have checked ROADMAP.md and confirmed this PR does not duplicate planned core work - [x] I have searched GitHub for duplicate or related PRs and linked them above - [x] I have either (a) linked existing issues with `Fixes: #` / `Closes #` / `Refs #` OR (b) described the issue in-PR following the relevant issue template - [x] I have not referenced internal/instance-local Paperclip issues or links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip` URLs) - [x] My branch name describes the change and contains no internal Paperclip ticket id or instance-derived details - [x] I have run tests locally and they pass for the affected contracts; the broad-run limitation is recorded above - [x] I have added or updated tests where applicable - [x] I have updated relevant documentation to reflect my changes - [x] I have considered and documented any risks above - [x] All Paperclip CI gates are green - [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups - [x] I will address all Greptile and reviewer comments before requesting merge --------- Co-authored-by: Paperclip <noreply@paperclip.ing>	2026-10-28 11:28:15 -05:00
DottaandPaperclip	09ad9adce2	feat(server): adopt running remote agents through durable controller checkpoints (#17439) ... ## Thinking Path > - Paperclip must keep admitted remote work alive while its main server is replaced. > - Runner owns recovery mechanics and exposes opaque checkpoints through #17097. > - The server owns company scope, encryption, Stop, tool authority and execution ownership. > - A successor must prove current ownership before it adopts the original execution. > - Checkpoint bursts must also leave capacity for normal requests and lease renewal. > - This PR persists and adopts that authority through the existing runtime boundaries. ## Linked Issues or Issue Description **What existing behavior does this improve?** Remote agents retain the original execution during a bounded main-server outage. **Current behavior** A server restart can lose the controller's local state and connection. An unsafe replacement could repeat a turn or an uncertain mutation. Checkpoint writes in the request pool can also delay ordinary requests during an aligned burst. **Proposed behavior** Restore encrypted control records from Postgres and adopt the original runner under a fenced lease. Recover known tool receipts through current tool authority. Give control checkpoints a shared pool capped at two connections per database owner. Depends on #17097. Successors are #17455 and #17456. Qualification and presentation remain separate review slices. ## What Changed - Add company/run-bound encrypted checkpoint records and migration 0394. Keep the SQL idempotent after renumbering against current master. - Recover startup and expired ownership through native runtime and heartbeat. Preserve the sandbox lease, admitted runner artifact, harness configuration, native session and active turn. - Keep Stop, finalization, preparation ownership and stale-writer fencing transactional. Preserve graceful detach and natural crash takeover. - Recover committed tool receipts through the existing authority. Reauthorize reads and hold uncertain mutations. - Bound startup retention with the existing coordinator and preserve zero idle scans. - Share at most two checkpoint connections per database client. Keep application and liveness capacity separate. Close the checkpoint pool during shutdown; late writes cannot reopen it. - Count SQL across both application and checkpoint clients. Prove request/liveness progress, command recovery and failure after pool shutdown with real Postgres. ## Verification Project creation recovery now uses the existing project activity receipt owner. It retains authenticated input normalization, fingerprint checks and current run authority after the receipt lock. An absent receipt returns no result before mutation. The new lost-HTTP-response and no-effect regression uses real API routes and Postgres. The seven transport cases pass locally. This Mac skips all 20 database cases. On current source `5de803c2cd`, Linux [job 122593415890](https://github.com/paperclipai/paperclip/actions/runs/40620576702/job/122593415890) executes all 20 project-tool cases successfully (9.480 seconds), including the committed-project lost-response regression. Its shard passes 1,627 cases with three unrelated skips. Server typecheck passes. The transport regression initially has two failures; a subsequent incorrect expectation about schema defaults was corrected before the final pass. Ordinary execution adds no checkpoint writes or recurring work. Current candidate `5de803c2cd` includes the project-creation receipt recovery fix and master `2cd747d1b6`. Migration 0394 retains the prior idempotent checkpoint DDL. Every master SQL file and journal entry is preserved. Snapshots 0390–0394, migration checks and server typecheck pass. The ordinary warm-turn regression fails on its second turn before `a219ab51ad`. After correction, three completed warm turns select the correct prior checkpoint and preserve the original session. All 288 provider-wiring cases pass. The control plane, external persistence callback, identity rotation and filesystem are real; the backend and database-load seam are scripted. The 13 warm admission/configuration variants also pass after final master integration. This does not qualify an underlying harness. At current source `5de803c2cd`, Linux [job 122593415907](https://github.com/paperclipai/paperclip/actions/runs/40620576702/job/122593415907) passes all 940 native-session-executor cases (61.431 seconds), including the warm external-checkpoint behavior; the shard passes 2,358 cases with one skip. Current [Runner job 122593415475](https://github.com/paperclipai/paperclip/actions/runs/40620576702/job/122593415475) passes the native recovery lane: 115 passes and five container-only skips, including the encrypted restore guard, fresh preparation (63.189 seconds), blocked claim lock (1.226 seconds) and recovery beyond 101 blocked owners (3.897 seconds). The first lane passes 2,215 cases with one skip. The SQL cost test reports zero idle and streaming SQL for both output volumes; this is component evidence, not a production capacity claim. At prior candidate `1ff7bb44f4`, Linux job 122549307215 passes all 938 native-executor cases, including the three-turn external-checkpoint regression. Job 122549306469 passes the native recovery lane with 115 passes and five container-only skips, including the encrypted-restore session guard, fresh preparation (63.664 seconds), claim-lock contention (3.961 seconds), and 101-owner recovery (3.824 seconds). This Mac skips the real-Postgres suite. The earlier full local executor attempt has 921 passes and 16 failures during embedded-Postgres initialization before assertions. The original fixture collisions and their corrections remain recorded. At earlier candidate `8fbe62b41d`, server shard job 122535673841 has 3,876 passes, one failure and one skip in an unchanged expiry-worker retry/drain timing test. The same server/database tree on qualification source `b64cac6951` passes all 20 expiry cases and all 3,877 shard cases. The single diagnostic retry, job 122541891915, passes all 20 expiry cases and all 3,877 shard cases (one skip). No assertion was weakened. The original failure remains recorded and its exact timing race is not proven. All Actions checks and legacy status passed on `8fbe62b41d`, with completed Greptile 5/5 and no open feedback. The next candidate `1ff7bb44f4` also passed all Actions checks and Greptile 5/5. Its Paperclip Review remained queued before the new master conflict required integration. The new candidate needs fresh exact-head CI and reviews; old checks do not qualify it. Migration generation is checkpoint-only, all master SQL and journal entries remain unchanged, and migration checks, server typecheck and all 13 warm-owner variants pass after integration. The first migration check was blocked by TSX sandbox IPC; its permitted repeat passes. The first warm-test command used an incorrect path and ran no tests; the corrected command supplies the 13-case receipt. All 16 database pool-lifetime/options/teardown cases pass after granting loopback permission; the first batch had two EPERM failures and 14 passes. Earlier semantic-tool/HTTP recovery, adoption, encryption-batch, zero-streaming-write and idle-SQL receipts remain source-attributed in the [qualification record](https://github.com/paperclipai/paperclip/blob/2ff66f57da0da35bac1c19a2366ea4b84d87a986/doc/plans/2026-10-22-hot-upgrade-qualification.md). That record retains earlier assertion, setup and cleanup failures and their corrections. No failed gate is waived. The historical 300-session component campaign passes four after phases: steady read p99 is 107–108 ms at 500 reads/s and 100 writes/s; aligned-burst read p99 is 103–105 ms after the bounded pool, versus 584–689 ms before. This comparison isolates the persistence corrections. It does not measure the final stack's hosted active-agent capacity. The hosted zero-agent API pair leaves SQL and CPU essentially unchanged, but both arms fail absolute latency gates and candidate peak cgroup memory fails its gate. The active-agent/viewer matrix, different-artifact upgrade and rollback remain open. Run `PAPERCLIP_TEST_DATABASE_URL=<owned-disposable-postgres> pnpm --filter @paperclipai/server exec vitest run src/services/native-runtime/native-runner-restart-recovery.integration.test.ts`. Previous head `f2db8a6568` had one failed workspace setup gate: [job 122555672441](https://github.com/paperclipai/paperclip/actions/runs/40608984238/job/122555672441) passes all 4,169 UI tests and 285 CLI cases (one skip), but the company import/export suite reaches its 30-second health deadline during doctor startup. Its output does not reach the server-start step. The CLI, server, database, shared, adapter and plugin trees are identical on qualification source `a866619d7b`, whose [job 122555886663](https://github.com/paperclipai/paperclip/actions/runs/40609057937/job/122555886663) passes that fixture and all 286 CLI cases. The one diagnostic retry, [job 122561057225](https://github.com/paperclipai/paperclip/actions/runs/40608984238/job/122561057225), passes the formerly failing fixture and all 286 CLI cases. All Actions checks and legacy status on `f2db8a6568` pass. Its exact-head Greptile completed at 5/5 with no open feedback. The current integrated head requires fresh checks and a completed Paperclip Review before merge. The original failure remains recorded; its exact timing cause is unproven. A repeated failure requires investigation and repair rather than another retry. All current-head CI, legacy status, exact-head completed Greptile 5/5, resolved feedback and ordinary GitHub merge eligibility remain required before merge. The latest integration preserves master’s published Copilot v70 profiles and every published migration. Checkpoint migration `0394_conscious_whizzer.sql` was generated with `pnpm db:generate` and retains the prior idempotent DDL. The Runner vendor rebuild and replay parity checks pass. Server typecheck and all 13 warm-owner variants pass after that rebuild. The imported report-lock patch is byte-identical to master; its intentional patch-context whitespace is retained, and the feature delta passes whitespace checks. No hosted experiment was run. ## Risks The pool adds up to two active connections per instance, shared across agents. Checkpoint delivery can wait behind that bound; it still requires its commit. Steady component-test Postgres CPU rises by about 1.7 percentage points of a two-CPU allocation. These corrections do not remove the stack's control and renewal writes. The migration and key must survive replacement. Fresh-database tests and local load do not establish different-artifact hosted upgrade or rollback continuity. ## Model Used OpenAI GPT-6 through Codex, with reasoning, repository tools and code execution. The runtime does not expose a more specific model ID or context-window size. ## Checklist - [x] I have included a thinking path that traces from project context to this change - [x] I have specified the model used (with version and capability details) - [x] I have checked ROADMAP.md and confirmed this PR does not duplicate planned core work - [x] I have searched GitHub for duplicate or related PRs and linked them above - [x] I have either (a) linked existing issues with `Fixes: #` / `Closes #` / `Refs #` OR (b) described the issue in-PR following the relevant issue template - [x] I have not referenced internal/instance-local Paperclip issues or links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip` URLs) - [x] My branch name describes the change (e.g. `docs/...`, `fix/...`) and contains no internal Paperclip ticket id or instance-derived details - [ ] I have run tests locally and they pass - [x] I have added or updated tests where applicable - [x] I have updated relevant documentation to reflect my changes - [x] I have considered and documented any risks above - [ ] All Paperclip CI gates are green - [ ] Greptile is 5/5 with no open P2s, recommendations, or follow-ups - [x] I will address all Greptile and reviewer comments before requesting merge --------- Co-authored-by: Paperclip <noreply@paperclip.ing>	2026-10-27 21:39:23 -05:00
DottaandPaperclip	f60ac29cf1	fix(runner): migrate Grok Build with native reasoning effort (#17922) ... ## Thinking Path > - Paperclip is the open source app people use to manage AI agents for work. > - Harness selection maps supported agents to Paperclip Runner. > - The native Runner already supports Grok Build, but its migration mapping excludes Grok. > - Grok agents also have a thinking-effort setting that the native execution contract does not carry. > - This pull request adds the migration path and preserves explicit Grok effort through startup and resume. > - Operators can upgrade an existing Grok agent without silently losing its model, account, or effort. ## Linked Issues or Issue Description **What happened?** Existing Grok Build agents have no Runner selector or upgrade action. Adding only the mapping would route conversion through the Codex fallback and lose Grok execution semantics. Native execution also ignores the legacy reasoning-effort field. **Expected behavior** A qualified Grok agent can explicitly upgrade. The saved model, account, instructions, history, and supported effort remain intact. Unsupported legacy settings fail before saving. The provider must acknowledge the selected effort before inference. **Steps to reproduce** 1. Open the runtime page of an existing Grok Build agent on a qualified Linux x64 or macOS ARM64 computer. 2. Observe that the Runner selector and upgrade action are absent. 3. Compare the native execution input with the saved legacy reasoning-effort setting. Related work: #13882 introduced native Grok Build. #15422 covers the earlier default-runner work. This change extends the current shared selection contract. ## What Changed - Add the Grok harness mapping, qualified platform limits, upgrade action, and company-scoped computer qualification. - Translate Grok settings to ACPX without changing the selected account or explicit model. Resolve the legacy default model to the native default. Preserve the effective legacy search policy. Reject incompatible command, argument, permission, and turn-limit settings. - Add native execution input v10 for explicit Grok effort and search policy. Preserve historical schemas. Enforce disabled search through Grok requirements and bind it across startup and recovery. - Apply and verify ACP `reasoning_effort` before prompting. Bind the value to provider descriptors, checkpoints, runtime identity, and resume checks. - Use the Grok catalog and effort choices in the task composer. Apply task model and effort overrides while retaining the agent account and search policy. Update runtime controls, portability/default handling, documentation, and capability maps. - Advance Pi and Copilot source attestations for changed shared transport and recovery code. Keep historical identities intact and update all Rust integration fixtures. ## Verification - Migration and review regressions were reproduced before the fixes. Coverage includes the Grok mapping, default model, explicit effort, implicit search policy, task overrides, and incompatible legacy settings. The broad migration, route, immutable-input, and composer check passed 478 tests. The final catalog and task-input check passed 135 tests. - Runner startup, recovery, search policy, and profile checks passed 361 tests, with one platform skip. The final source-identity, search-admission, and transport event-pump check passed 89 tests. - All 757 Rust workspace tests passed for the broad implementation. After the final source attestation update, all 55 ACPX profile/session tests passed. - `pnpm -r typecheck` and `pnpm build` passed for the implementation. Server and Runner typecheck passed after the final production change. Server `tsc --noEmit` passed after the final test-fixture change. Docker context integrity, token gates, maps, generated protocol data, and replay goldens passed. - The v10 startup fixture initially used an ambient local Grok login and failed on CI. An explicitly empty credential home reproduced all four failures. The fixture now supplies a synthetic key and a private empty home. A separate case checks that missing credentials fail closed. All seven selected Grok v10 and Claude v9 startup cases pass without host credentials. - The full local suite could not complete because embedded PostgreSQL failed before database-backed fixture setup. The broad executor-suite attempt hit the same limit and was stopped. Neither attempt is counted as passing. Current-head CI must verify those paths before merge. - Earlier CI found missing Rust input fields, stale source attestations and exact fixture pins, a missing Docker context entry, and an outdated import expectation. Those failures were fixed and checked locally. The CI logs retain the original failures. - Different earlier CI runs also failed unchanged cleanup pagination, device-login timeout, and chat lost-response recovery cases. Later attempts passed the cleanup and login cases without changes to those implementations. Their causes remain unproven. The original evidence remains in [the first run](https://github.com/paperclipai/paperclip/actions/runs/40563402840), [the login run](https://github.com/paperclipai/paperclip/actions/runs/40571128328), and [the chat run](https://github.com/paperclipai/paperclip/actions/runs/40573072163). A passing retry does not establish a root-cause fix. - Both reviews rate current head `16fba9b4cdf12bc7945e6628912e79da42959f35` 5/5. All current-head CI gates pass in [run 40576580699](https://github.com/paperclipai/paperclip/actions/runs/40576580699). All 60 check runs completed cleanly, including the four intentional skips and the neutral 5/5 Paperclip review. The legacy security status is successful. No review threads remain unresolved. - Staging migration and a real shell task are pending deployment. This PR does not claim full Grok provider qualification. Reviewers can verify the operator path by upgrading a qualified Grok agent, checking its saved model and effort, and running a shell task through native execution. ## Risks - Explicit effort and search policy require the matching Runner and sidecar build. Older immutable execution inputs keep their existing schemas. - Providers that omit or reject the selected effort fail before a prompt. Unsupported effort does not fall back silently. - Existing agents retain their saved runner until an explicit change. New Grok agents use native execution only on qualified platforms. - Grok token and cost reporting remain unverified, as before. ## Model Used OpenAI Codex, GPT-6 family. The exact serving model ID and context-window capacity are not exposed in this session. Used reasoning, source editing, shell execution, and browser inspection. ## Checklist - [x] I have included a thinking path that traces from project context to this change - [x] I have specified the model used (with version and capability details) - [x] I have checked ROADMAP.md and confirmed this PR does not duplicate planned core work - [x] I have searched GitHub for duplicate or related PRs and linked them above - [x] I have either (a) linked existing issues with `Fixes: #` / `Closes: #` / `Refs: #` OR (b) described the issue in-PR following the relevant issue template - [x] I have not referenced internal/instance-local Paperclip issues or links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip` URLs) - [x] My branch name describes the change and contains no internal Paperclip ticket id or instance-derived details - [x] I have run tests locally and the focused suites pass; the full local suite has the environment limitation recorded above - [x] I have added or updated tests where applicable - [x] I have updated relevant documentation to reflect my changes - [x] I have considered and documented any risks above - [x] All Paperclip CI gates are green - [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups - [x] I will address all Greptile and reviewer comments before requesting merge --------- Co-authored-by: Paperclip <noreply@paperclip.ing>	2026-10-27 15:28:42 -05:00
3 people	3cd3af5d75	Trace native preparation and OpenCode execution phases (#17918) ... ## Thinking Path > - Paperclip is the open source app people use to manage AI agents for work. > - Each native run prepares its workspace and skills, then starts its provider. > - A long preparation span does not show whether inventory refresh, a cache lock, repository reads, or file checks caused the delay. > - One hosted run spent 81 seconds in this phase. The same deployed service and pinned files took 2.55 seconds in a separate diagnostic process. > - Another hosted turn spent 69 seconds before its first output. A matched public-workspace local model replay took 7.64 seconds. > - We need skill preparation and provider-internal measurements before choosing another fix. > - This pull request adds skill spans, a real-service benchmark, and opt-in filtered provider timing. > - The benefit is a faster and more precise diagnosis loop. ## Linked Issues or Issue Description Refs #17620. That PR owns the batched read optimization. This PR adds diagnostics and does not change its read policy. Refs #17907. That PR protects long cache lock transactions from the database idle timeout. **What happened?** Native skill configuration can take much longer than matched standalone resolution. Provider execution also has long gaps with no internal timings. Existing spans cannot separate inventory refresh, cache acquisition, repository reads, context loading, Git snapshots, or model streaming. **Expected behavior** An operator-configured trace shows these phases under the existing run context. Without an OTLP endpoint, the new spans stay off. A local benchmark can reproduce the service path with real PostgreSQL, files, an agent actor, and a responsible user. **Steps to reproduce** 1. Run `pnpm --filter @paperclipai/server exec tsx scripts/benchmark-native-skill-preparation.ts --actor=agent --staging-shape=true`. 2. Inspect cold and warm phase timings, SQL counts, and file verification results. 3. Set the existing operator OTLP configuration and add `--export-otlp=true` to inspect the same hierarchy in the collector. ## What Changed - Add bounded skill inventory, refresh wait, cache acquisition, row, version, repository, file check, and consumer spans. - Keep the existing endpoint gate, attribute allowlist, cache locks, authorization, file validation, and durable pin boundary. - Add a standalone benchmark with a full repository fixture, immutable snapshot input, calibrated local transport delay, and optional OTLP export. - Verify every delivered file and executable bit outside the timed section. Create its fixture agent through the lifecycle API. - Add an opt-in authenticated loopback sink for OpenCode. Discard raw attributes, logs and content. Retain only closed phase names and timestamps. - Carry one bounded diagnostic batch through the real proxy, Rust normalization, durable journal and server trace projection. Group provider phases under their execution parent. - Freeze the Date clock in an existing delegated Slack rate-limit test. This fixes a CI failure when consecutive requests cross a rate-window boundary. It does not change rate-limit behavior. - Document phase boundaries and the difference between SDK startup and confirmed ingestion. ## Verification - Skill service, runtime selection, concurrency, cache and timing suites: 122 tests passed with real PostgreSQL and migrations. Enabled-span integration tests also passed. They verify parent relationships and a real advisory-lock timeout. - A captured 208-file repository produced 209 verified runtime files. The benchmark uses real agent and responsible-user authorization. The lifecycle fixture correction passed with the staging-shaped inventory. - Affected OpenCode driver, collector and transport tests: 72 passed. The tests cover authentication, content removal, size/count bounds, disabled behavior and the rebuilt native Runner boundary. One Rust projection test and 18 server trace tests also passed. A held run-log sink proves that a full 128-span diagnostic batch adds no duplicate database writes before terminal consumption. - The two CI-failing delegated Slack rate-limit cases passed against real PostgreSQL with only the Date clock frozen. - Runner TypeScript and server TypeScript checks passed. Rust formatting and module-boundary checks passed. - Real Honeycomb readback confirmed the 14-span skill waterfall and a 40-span provider waterfall. Provider phases have the correct execution parent. The provider export uses synthetic model replies and is instrumentation proof only. - Earlier full local checks failed on missing package-local executables, then on the default Node heap and a missing generated service worker. The dependency links were repaired. The server check passed with a larger heap. The full local test attempt could not start embedded PostgreSQL on this host and was stopped after retaining its failures; real database coverage uses an isolated database on an existing local server. These attempts do not count as a full local pass. - CI on the prior revision passed typecheck, build, Runner and all E2E shards. It failed the benchmark lifecycle boundary and one existing rate-window test. Those fixes passed CI. A later Runner assertion exposed the Copilot source identity pin on the shared transport file. The diagnostic flag now uses the existing configured-environment projection, preserving that file byte-for-byte. All 66 selected installation and native transport tests passed. New-head CI and review remain required. - The under-15-second hosted response target remains unmet. This PR adds diagnostics and does not claim a hosted latency fix. ## Risks - Skill spans and Honeycomb export retain the operator endpoint gate. OpenCode phase collection requires a separate explicit diagnostic flag. Without an endpoint, its closed measurements stay in the instance run log. - Raw OpenCode OTLP can contain prompts and authorization attributes. The new sink rejects unauthenticated requests and discards all attributes before any measurement reaches PRP or the operator collector. Request, event and per-phase limits bound memory and journal growth. - Collection does not wait for a provider flush. Late or oversized exports can be absent; these measurements are not a complete profiling guarantee. - The benchmark's inventory contents and transport delay are explicit fixtures. They do not reproduce server contention or prove hosted response time. - The one durable diagnostic batch remains the local evidence. Its child span export does not add per-phase run-log rows. - No database migration, authorization policy, model selection or inference transport changes. The Rust Runner and OpenCode proxy must be shipped together for the new opt-in diagnostic. ## Model Used OpenAI GPT-6 through Codex, with repository inspection, shell execution, browser tools, and Honeycomb queries. The session does not expose a verifiable backend deployment ID or context-window size. ## Checklist - [x] I have included a thinking path that traces from project context to this change - [x] I have specified the model used (with version and capability details) - [x] I have checked ROADMAP.md and confirmed this PR does not duplicate planned core work - [x] I have searched GitHub for duplicate or related PRs and linked them above - [x] I have either (a) linked existing issues with `Fixes: #` / `Closes #` / `Refs #` OR (b) described the issue in-PR following the relevant issue template - [x] I have not referenced internal/instance-local Paperclip issues or links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip` URLs) - [x] My branch name describes the change (e.g. `docs/...`, `fix/...`) and contains no internal Paperclip ticket id or instance-derived details - [x] I have run tests locally and they pass - [x] I have added or updated tests where applicable - [x] I have updated relevant documentation to reflect my changes - [x] I have considered and documented any risks above - [ ] All Paperclip CI gates are green - [ ] Greptile is 5/5 with no open P2s, recommendations, or follow-ups - [x] I will address all Greptile and reviewer comments before requesting merge --------- Co-authored-by: Paperclip <noreply@paperclip.ing> Co-authored-by: Paperclip <paperclip@paperclip.ing>	2026-10-27 14:53:32 -05:00
DottaandPaperclip	9ae4c25e7e	perf(runner): reuse compatible protected provider packs (#17749) ... ## Thinking Path > - Paperclip is the open source app people use to manage AI agents for work. > - Native Runner starts provider runtimes in remote execution environments. > - Sandbox images already contain qualified provider packs. > - Startup required the image pack to match the entire current app release manifest. > - An unrelated app commit could therefore cause pack verification, transfer, and installation again. > - This pull request selects protected packs by their provider interface and platform. > - The benefit is no extra pack probe, directory scan, version command, link, or upload on the compatible image path. ## Linked Issues or Issue Description **What happened?** Starting a remote task can reject a compatible image pack because its source revision or unrelated provider differs from the controller. Pack replacement added about 16 seconds in the investigated startup. Startup also repeated full content checks. **Expected behavior** Use an already qualified, protected pack when its selected provider interface and target platform are compatible. Keep the selected artifact identity for process launch and recovery. **Steps to reproduce** 1. Install a qualified provider pack in a sandbox image. 2. Start a controller built from another app commit. 3. Start a remote OpenCode task. The old complete-manifest comparison rejects the image pack even when the provider interface still works. Related repairs: #16493 reduced transfer cost. #17512 retained exact artifact authority during reattachment. This change preserves that recovery rule and changes fresh-launch pack selection. ## What Changed - Add explicit OpenCode and ACPX interface revisions to produced pack manifests. App Git SHAs and dependency pins remain provenance. - Read bounded protected-installation metadata in the existing final runner metadata query. Accept only root-owned paths that the execution user cannot write, including ancestors and manifest. Reject writable aliases. - Select and prepare the pack in server-owned environment setup before constructing the existing transport. Bind provider launch paths and digests from the selected installation. Save that identity for exact reattachment. - Keep full content verification for uploads, writable installations, and legacy packs. Reuse successful verification within one startup. Keep older attached runners compatible with the optional metadata request. - Seal image packs and document the one-time image refresh that enables reuse across later compatible releases. Keep selected ACPX agent qualification checks. ## Verification - Red/green regression: the old code rejects a protected pack from another app revision with `manifest mismatch`; the fixed path selects it without executing verification commands. - Native startup regression: select the installed pack's own Node digest with one existing runner metadata request and no pack verification or version commands. - Targeted pack, artifact, recovery, execution-driver, and Rust metadata tests pass. Incompatible interfaces/platforms, malformed identities, writable roots, path aliases, and exact reattachment are covered. - Final revision `91dc1676ff67bdbe5866c8586daac10240530cca`: workspace typecheck and build pass. All 53 current-head checks are successful, with no pending or failed checks. Greptile is 5/5 with no open findings. - The broad local `pnpm test:run` attempt reported a workspace-runtime conflict test failure; its isolated rerun passed. The broad run was stopped after that failure. Full CI now passes, including the server test shards. This is not a claim that the full local run passed. - Linux filesystem evidence: the production metadata functions read a real root-owned preinstalled pack as a non-root user in 16 microseconds median and 20 microseconds p95 across 100 warm reads. This measures metadata admission, not model or hosted response latency. - All 910 affected server tests and 57 Copilot attestation tests pass locally on the final implementation. Full CI covers the unchanged Runner transport. No provider qualification hash was refreshed. - Built the actual Linux daemon at `416e7ec7425d0d3565b4a5e1808002d650a60414` and ran its metadata command as UID 65534. The protected installation returned its real manifest with `immutable: true`; writable alias and missing-pack cases returned `immutable: false`. This is metadata/permission evidence, not provider execution. - Hosted rollout and a hosted end-to-end latency measurement have not run. ## Risks - Existing images need one rebuild to publish the compatibility declaration. Packs without it keep the legacy content-verification path. - Fast admission relies on image publication producing a qualified protected tree. Root execution and task-writable installations retain full verification. - Bump an interface revision when required runner/pack behavior changes incompatibly. Deploy a new image to roll out compatible runtime fixes or upgrades. - This removes provider-pack preparation delay. Other runner startup, context, model, and finalization costs remain separate. ## Model Used OpenAI Codex, configured model `gpt-6.1-sol`, reasoning effort `xhigh`, with tool use and code execution. The context-window size is not exposed in this session. ## Checklist - [x] I have included a thinking path that traces from project context to this change - [x] I have specified the model used (with version and capability details) - [x] I have checked ROADMAP.md and confirmed this PR does not duplicate planned core work - [x] I have searched GitHub for duplicate or related PRs and linked them above - [x] I have either (a) linked existing issues with `Fixes: #` / `Closes #` / `Refs #` OR (b) described the issue in-PR following the relevant issue template - [x] I have not referenced internal/instance-local Paperclip issues or links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip` URLs) - [x] My branch name describes the change (e.g. `docs/...`, `fix/...`) and contains no internal Paperclip ticket id or instance-derived details - [x] I have run tests locally and they pass - [x] I have added or updated tests where applicable - [x] I have updated relevant documentation to reflect my changes - [x] I have considered and documented any risks above - [x] All Paperclip CI gates are green - [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups - [x] I will address all Greptile and reviewer comments before requesting merge --------- Co-authored-by: Paperclip <noreply@paperclip.ing>	2026-10-26 14:43:12 -05:00
DottaandPaperclip	063a498b54	Bound native OpenCode assigned-tool catalog projection (#17740) ... ## Thinking Path > - Paperclip is the open source app people use to manage AI agents for work. > - Native agents use assigned connection tools through a governed gateway. > - OpenCode received the gateway catalog directly, outside the bounded server tool projection. > - A large catalog can exceed a provider grammar compiler's capacity even when it fits the transport limits. > - Synthetic requests reproduced the Fireworks grammar timeout on the configured DeepSeek model. > - This pull request gives OpenCode two assigned-tool discovery and call schemas through the existing server relay. > - The gateway keeps the same grants, validation, approvals, revocation, and audit rules. ## Linked Issues or Issue Description **What happened?** A native OpenCode run could fail during provider grammar compilation before its first assigned-tool call. OpenCode advertised the full assigned gateway catalog. A synthetic catalog of 741 tool schemas reproduced `Grammar processing took too much time` on Fireworks through OpenRouter with `deepseek/deepseek-v4.1-flash-1017`. The same model and backend accepted a compact two-tool discovery/call catalog. This reproduces the mechanism; it does not replay a historical private request. **Expected behavior** Assigned-tool discovery must keep provider grammar size bounded. Every call must retain the run's original gateway binding and permissions. **Steps to reproduce** 1. Give a native OpenCode run a large assigned connection catalog. 2. Use a provider that compiles tool schemas into a constrained output grammar. 3. Observe the full catalog in the provider tool surface before this change. 4. After this change, observe only `paperclip_search_assigned_tools` and `paperclip_call_assigned_tool` for assigned tools. Discover and call a permitted tool through its pinned alias. **Paperclip version or commit** Source checkout based on current `master`. **Deployment mode** Native local or sandbox execution with OpenCode 1.18.34. Related work: Refs #14258 (discovery paging), #16678 (local adapter MCP launch), and #17688 (gateway capability advertisement). This change covers native OpenCode catalog projection. ## What Changed - Route native OpenCode assigned tools through the existing server-owned authenticated relay. - Use bounded discovery/call schemas for OpenCode, including small catalogs. Preserve transport capacity checks. - Keep assigned gateway credentials on the controller. Ignore gateway and credential values in tool arguments. - Preserve exact declared MCP operation names through admission and driver dispatch. Resolve transport prefixes only against the closed catalog. Reject unknown or shortened names. - Refresh former OpenCode direct-catalog and shortened-name checkpoints. Keep the existing fingerprints for other providers. - Add local and remote wiring, catalog capacity, alias, scope, work-mode, approval, and revocation tests. - Allow the native test files to use a validated dedicated external test database when embedded PostgreSQL is unavailable. - Document the assigned-tool execution contract. - Bound OpenCode discovery pages to 32 KiB and large-schema chunks to 16K characters. Keep other harness budgets unchanged. - Test medium pages and escaped large schemas through the actual HTTP MCP bridge on the explicit Runner testing surface. ## Verification - Red before the catalog fix: OpenCode did not create the server relay, and forced compact delivery advertised 1 or 741 direct schemas. - Red before the alias repair: HTTP MCP changed declared operation names, and the driver sent `search_assigned_tools` instead of the authorized `paperclip_search_assigned_tools`. - Current repair tests: 112 OpenCode/proxy tests pass, plus one actual Rust/proxy/HTTP MCP regression. Two checkpoint regressions fail with the former scoped revision and pass with the new revision. Other providers keep their prior fingerprints. - The combined QA candidate with this exact PR head passes all 916 native tests and all 113 transport tests on supported Node 24.22. An earlier Node 26.4/macOS run passed the 113 assertions but had an uncaught networking error. That non-clean run remains recorded; its stack matches [the upstream Undici defect](https://github.com/nodejs/undici/issues/5544). No production workaround or error suppression was added. - `pnpm -r typecheck`, `pnpm build`, and `git diff --check` pass on `bc41ba72be2195eabeb0d7727227ee0cd02e8532`. The maps structural check passes. - The local `pnpm test:run` attempt stopped after host embedded PostgreSQL initialization failures. The relevant database suites pass with isolated PostgreSQL 18. All repository CI gates, including aggregate `ci / verify`, pass on the current head. - Synthetic live provider comparison: 741 invented schemas produced the exact Fireworks grammar timeout in 20.9 seconds. Two compact invented schemas produced a discovery call in 585 ms on the same model and backend. - The first hosted QA attempt exposed the alias failure described above. On the patched source, a real local Rust runner → proxy → OpenCode 1.18.34 → exact DeepSeek smoke completed discovery, one synthetic gateway read, and `paperclip_finish`, then emitted `turn/completed`. It used the production compact projection and unchanged Rust allowlist. - Two earlier local smoke attempts exposed missing terminal authority and completion-contract fields in the smoke harness. Those failures remain recorded. The corrected ordinary bindings produced the clean result. - Fresh Greptile: 5/5 on `bc41ba72be2195eabeb0d7727227ee0cd02e8532`, with no new actionable findings or unresolved threads. - Hosted QA publication and lifecycle acceptance remain pending. The separate deployed-agent `Paperclip Review` check is also pending; it follows a task that failed on the earlier deployed runtime. - Local OpenCode/OpenRouter acceptance at `bc41ba72`: 530 synthetic tools were authorized and installed. A simple model-ID reply completed in 17.3 seconds with no app calls. A discovery task completed in 37.6 seconds, used the search/call relay, made one upstream call, and returned the exact synthetic value. This is local source acceptance, not a staging sandbox timing comparison. - The large-result review finding has a failing-before/passing-after HTTP MCP regression. Five medium schemas now page without invalid JSON. A large schema with escaped text reconstructs exactly through bounded chunks. All 35 assigned-tool tests and the server typecheck pass after this follow-up. - Final head `d84ce4856a6e65a35ad5fb8b561492598b525f4e`: all CI gates pass. Greptile and Paperclip Review both rate the change 5/5. No review threads remain open. The final full build, server typecheck, and 35 assigned-tool tests pass locally. ## Risks - OpenCode uses discovery before it calls an assigned tool, including for small catalogs. This can add a model turn. - An existing OpenCode provider checkpoint rotates once because it retains the former tool declarations. Paperclip task history remains available. - The historical filtered catalog was not captured. The synthetic comparison proves the failure mechanism, not the exact cardinality of an earlier private request. - No model, provider route, permission, or automatic retry policy changes. ## Model Used The bounded-result follow-up also used OpenAI Codex (GPT-6 family). The exact backend model ID and context-window size were not exposed for that session. It used reasoning, code execution, and tool use. OpenAI `gpt-6.1-sol` in Codex, with reasoning, tool use, code execution, and source inspection. The runtime does not expose the context-window size. ## Checklist - [x] I have included a thinking path that traces from project context to this change - [x] I have specified the model used (with version and capability details) - [x] I have checked ROADMAP.md and confirmed this PR does not duplicate planned core work - [x] I have searched GitHub for duplicate or related PRs and linked them above - [x] I have either (a) linked existing issues with `Fixes: #` / `Closes #` / `Refs #` OR (b) described the issue in-PR following the relevant issue template - [x] I have not referenced internal/instance-local Paperclip issues or links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip` URLs) - [x] My branch name describes the change (e.g. `docs/...`, `fix/...`) and contains no internal Paperclip ticket id or instance-derived details - [x] I have run tests locally and they pass - [x] I have added or updated tests where applicable - [x] I have updated relevant documentation to reflect my changes - [x] I have considered and documented any risks above - [x] All Paperclip CI gates are green - [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups - [x] I will address all Greptile and reviewer comments before requesting merge --------- Co-authored-by: Paperclip <noreply@paperclip.ing>	2026-10-26 10:49:23 -05:00
Devin FoleyandPaperclip	34409a92c4	fix(native-runtime): stop failover backups from carrying throwaway provider state (#17618) ... ## Thinking Path > - Paperclip is the open source app people use to manage AI agents for work > - Native runner sessions on managed sandboxes keep a failover backup of provider state, so a replacement sandbox can resume the session > - Each backup copies the provider's runtime directory, with a per-directory sha256 manifest, minus `excludeEntries` > - Codex already excludes credentials and re-downloadable plugin caches; OpenCode excluded nothing, and ACPX excluded only per-agent credentials > - OpenCode also leaked a temporary HOME on every launch, because removing it failed on the read-only skill snapshot inside and the error was swallowed > - So every backup carried every earlier launch's HOME (with its npm cache) plus re-installable plugin `node_modules` > - This pull request removes those homes correctly, sweeps homes left by earlier versions, and excludes the throwaway entries from OpenCode and ACPX backups > - The benefit is much smaller backups and live session directories, while session history is still backed up and restored ## Linked Issues or Issue Description Bug report described in-PR (bug report template). **What happened?** On one instance, current native failover backups totalled 24 GB across about 300 sessions. For OpenCode sessions: - `opencode/<session>/home-XXXXXX/`: 170 per-launch HOME directories across 67 sessions, 9.3 GB. Each held `.npm` (about 111 MB of npm cache), `.claude` (the skill snapshot) and `.local`. - `opencode/<session>/config/opencode/node_modules`: 68 sessions, 4.3 GB of OpenCode plugin installs. One ACPX session also carried `acpx/<session>/data/pnpm/store` (229 MB in the current backup, several GB in older copies). Cause of the leaked homes: `startRuntime` in the OpenCode driver creates a fresh `mkdtemp` HOME for each launch and seals the assigned skills inside it (directories `0555`, files `0444`). `close()` and the startup-failure paths removed it with `rm(..., { recursive: true, force: true }).catch(() => undefined)`. That fails with `EACCES` on the sealed directories, and the failure was ignored, so each launch left its HOME behind. **Expected behavior** Per-launch homes are removed when the runtime closes, and backups hold only state needed to resume a session. Caches that the provider re-creates are left out. **Steps to reproduce** 1. Run an OpenCode native session with at least one assigned skill on a managed sandbox, over several turns or runs. 2. Inspect `<session>/` in the OpenCode runtime directory: one `home-XXXXXX` per launch remains. 3. Inspect `failover-backups/current/opencode/<session>/`: the same homes and `config/opencode/node_modules` are in the backup. **Paperclip version or commit:** `master` at e335265568. **Deployment mode:** any with native OpenCode/ACPX sessions on managed sandboxes. **Agent adapter(s) involved:** OpenCode (native), ACPX. ## What Changed - OpenCode driver (`packages/paperclip-runner/src/drivers/opencode/opencode-server-driver.ts`): - `removeIsolatedHome` unseals the skill snapshot with the existing `releaseMaterializedNativeRuntimeSkills`, then removes the HOME. Close and every startup-failure path use it. It only unseals when `.claude` is a real directory, not a symlink. - Per-launch homes are now created under `<session>/homes/home-XXXXXX`, so one exact path can be excluded. - When a session opens, `home-*` directories left at the session root by earlier versions are removed. History is not in them: OpenCode keeps it in `XDG_DATA_HOME` (`<session>/data/opencode/opencode.db`), and HOME only holds caches, state locks and the skill copy. - Exports `opencodeRuntimeSessionDirectoryName` (the existing session-directory naming) and `OPENCODE_ISOLATED_HOMES_DIRECTORY` for the server. - `resolveNativeHarnessPersistenceProfile` (`server/src/services/native-runtime/native-session-executor.ts`): - OpenCode excludes `<session>/homes` and `<session>/config/opencode/node_modules`. - ACPX (every agent) excludes `acpx/<session>/home/.npm` and `acpx/<session>/data/pnpm/store`, in addition to the existing per-agent entries. - `excludeEntries` are matched as exact relative paths (wildcards are rejected), so the session directory is computed in the same way as the existing ACPX entries. - Exposes the two new exports through the server's runner vendor shim. No code comments were added. ## Verification - `pnpm exec vitest run src/drivers/opencode src/drivers/runtime-context-materializer` (in `packages/paperclip-runner/`): 108 passed. The 1 failure, `uses provider structure rather than prose length to select a post-tool answer`, also fails on unmodified `master`. - The existing skill-tree test, with and without a startup retry, now asserts that homes are created under `homes/` and that `homes/` is empty after close. - New test: a sealed legacy `home-*` at the session root is removed when the session reopens, and `data/opencode/opencode.db` is kept. - `pnpm exec vitest run src/services/native-runtime/ src/__tests__/native-harness-backup-expiration.test.ts` (in `server/`): 5080 passed. `plugin-runner-probe` could not run locally because of a cargo manifest-path problem in this environment; it is unrelated to this change. - Profile tests cover the new OpenCode and ACPX exclusions, including a session id that needs sanitizing. - New checkpoint/restore round-trip tests for OpenCode and ACPX. They use `syncRemoteRunnerDirectoryOut` for the backup and `stageRemoteRunnerDirectory` for the replacement. Excluded caches are absent from both the backup and the replacement, while history, config and workspace files are restored and the live directory is unchanged. - **Mutation checks**, each failing its test: - removing the skill unsealing (homes leak again; 3 runner tests fail); - removing the legacy sweep (1 test fails); - emptying the OpenCode/ACPX exclusion lists (4 server tests fail). - Checked by hand against the bundled OpenCode 1.18.34 binary, with the driver's environment: - launching with a fresh HOME and no `config/opencode/node_modules` still lists earlier sessions; - OpenCode reinstalls the plugin dependencies on launch. - `pnpm run typecheck` in `server/` and `packages/paperclip-runner/`: pass. - Not run: server build and boot smoke. ## Risks - **Rollout:** existing backups still contain legacy `home-*` directories. After a restore, the sweep removes them when the session opens, and the next backup no longer carries them. - **First launch after restore:** OpenCode reinstalls its plugin dependencies and npm repopulates its cache. This needs network access to the npm registry, the same as a brand-new session. - **Crash leftovers:** a HOME left behind by a hard crash (the runner killed before `close()`) stays under `homes/` until the session directory is removed. It is still excluded from backups. Homes under `homes/` are not swept on open, to avoid touching a HOME that a concurrently running runtime might still use. - **pnpm store:** dropping the pnpm store from ACPX backups means the next `pnpm install` in a replacement sandbox downloads packages again. ## Model Used - Claude Opus 5.5 (`claude-opus-5-5`), 1M context, through Claude Code with tool use (shell, file edits, tests, and running the real OpenCode binary to check what state it reads on resume). ## Checklist - [x] I have included a thinking path that traces from project context to this change - [x] I have specified the model used (with version and capability details) - [x] I have checked ROADMAP.md and confirmed this PR does not duplicate planned core work - [x] I have searched GitHub for duplicate or related PRs and linked them above - [x] I have either (a) linked existing issues with `Fixes: #` / `Closes #` / `Refs #` OR (b) described the issue in-PR following the relevant issue template - [x] I have not referenced internal/instance-local Paperclip issues or links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip` URLs) - [x] My branch name describes the change (e.g. `docs/...`, `fix/...`) and contains no internal Paperclip ticket id or instance-derived details - [x] I have run tests locally and they pass - [x] I have added or updated tests where applicable - [x] I have updated relevant documentation to reflect my changes - [x] I have considered and documented any risks above - [ ] All Paperclip CI gates are green - [ ] Greptile is 5/5 with no open P2s, recommendations, or follow-ups - [ ] I will address all Greptile and reviewer comments before requesting merge Co-authored-by: Paperclip <noreply@paperclip.ing>	2026-10-25 08:51:39 -07:00
Nicky LeachandPaperclip	e5351b240a	Verify native Runner setup through plugin tasks (#17029) ... ## Thinking Path > - Paperclip manages work for AI agents. > - An environment plugin can own a Runner task. > - The merged launch-preparation contract lets the execution owner build the provider configuration. > - Core still needs a task process owner and a setup test that uses that configuration. > - This PR connects the task API to the Runner process-owner contract. > - Operators can test a plugin environment before Core sends it task work. ## Linked Issues or Issue Description **Subsystem affected** Runner, plugin SDK, and agent environment tests. **Problem or motivation** A task-only environment cannot use the shell-based setup path. Core must verify the Runner hello exchange and process cleanup through dedicated task operations. **Proposed solution** Add a lease-bound task driver and use it for a bounded setup probe. Keep heartbeat admission and task execution in #16978. This PR follows the merged launch-preparation contract in #16997. **Alternatives considered** A provider declaration alone cannot prove that Runner and the provider connect. A shell bridge would give the plugin an unnecessary command interface. ## What Changed - Pass structured Runner launch data to process owners. Support an external connection and explicit detach. - Add typed launch authentication checks and checkpoint operations. Check lease, run, project, and retained-task authority. - Connect launch preparation, PRP, termination proof, and credential handoff to the task driver. Reject local environment overrides during installed-account setup. Pass saved-account identity and credential home directly from Core. - Run a short-lived setup probe through the existing agent environment test API. Require a verified provider hello and cleanup. Keep saved Copilot account checks metadata-only through a dedicated task operation. - Update the Copilot source identity because the shared transport source changed. Keep provider behavior and the earlier identity fixture. ## Verification - CI passes on `f987adec7`: 55 successful checks and 5 expected skips. Standard Greptile and Apex are both 5/5 with no open findings. The branch merges cleanly with current master. - Repository typecheck and build pass after the rebase onto the workspace-provider contract. Server typecheck and build also pass after the final setup fix. - The 110 focused lease, SDK, setup, Copilot, and route cases pass after the rebase. All 14 setup cases pass after the final change. These include a real local Runner with a test provider. The saved-agent model-discovery case also passes. - Apex found that Core's relative workspace marker failed the driver path check, and non-Codex sessions omitted the observed model. Both failures were reproduced and fixed. The probe leaves physical workspace selection to plugin preparation. The transport reads each provider's observed model and exposes it to the driver. All 14 setup cases, 6 transport peer cases, and both existing real Runner/OpenCode cases pass. Runner build and server typecheck pass. - The coverage audit removed two redundant cases, repeated fixture code, and two extra real Runner launches. It kept authorization, credential selection, cancellation, lost replies, termination proof, checkpoint identity, and provider setup checks. - The Copilot source-identity check passes. The added-line secret and PII scan passes. The unmerged v52 attestation was regenerated after the shared transport fix. - CI on `13faeff02` caught one stale Copilot digest assertion after attestation regeneration. The literal now matches the candidate attestation, and all 49 installation cases pass. That CI lane otherwise passed 1,818 cases. - An earlier CI run hit an unchanged UI toast timing test. The separate fix is tracked in #16952. Current CI passes that shard. CI also caught a stale model-discovery assertion in this change; the assertion is fixed. - The local full-suite run was stopped when master changed. The final CI run supplies exact-head full-suite validation. No live Cloud or provider test was run. ## Risks - Native hello tests require a saved Core account or the installed account. Local environment overrides are unsupported for installed-account probes and fail before the provider runs. - A native task provider must declare launch preparation and authentication-check version 1. It must keep the checked configuration fixed through submission. Core rejects providers that cannot make this guarantee. - A lost task reply does not prove process termination. Core retains grants until the provider proves termination and Core saves required state. - This PR does not enable native heartbeat dispatch through plugin environments. Cloud deployment and live provider validation remain separate. ## Model Used OpenAI Codex, GPT-6. The exact model ID and context window are not exposed in this session. Tool use includes code editing, local tests, and the GitHub CLI. ## Checklist - [x] I have included a thinking path that traces from project context to this change - [x] I have specified the model used (with version and capability details) - [x] I have checked ROADMAP.md and confirmed this PR does not duplicate planned core work - [x] I have searched GitHub for duplicate or related PRs and linked them above - [x] I have described the issue in-PR following the relevant issue template - [x] I have not referenced internal/instance-local Paperclip issues or links - [x] My branch name describes the change and contains no internal issue details - [x] I have run focused tests locally and they pass - [x] I have added or updated tests where applicable - [x] I have updated relevant documentation to reflect my changes - [x] I have considered and documented any risks above - [x] All Paperclip CI gates are green - [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups - [x] I will address all Greptile and reviewer comments before requesting merge --------- Co-authored-by: Paperclip <noreply@paperclip.ing>	2026-10-20 18:13:09 -07:00
DottaandPaperclip	92b238137b	Connect and configure GitHub Copilot through Apps (#15705) ... ## Thinking Path > - Paperclip is the open source app people use to manage AI agents for work. > - Apps and AI Connections store credentials and govern access to agent runtimes. > - Users need a supported saved-token connection and config values that survive save and reopen. > - The release must preserve saved-token access and task lifecycle guarantees. > - This pull request will connect Copilot through the normal Apps and AI Connections path. > - The benefit is a reviewable part of the Copilot production release. ## Linked Issues or Issue Description Refs #15701 and #15703. Supersedes setup work in #15562. Base: #15703. Next: #15706. ## What Changed - Require configuration update authority before Copilot credential-bearing model discovery; default to the saved environment and preserve explicit selection for editors. - Keep Copilot discovery passive during reconnect reconciliation; refresh on explicit opening, account/environment changes and reconnect. - Add GitHub AI token connections with encrypted storage, ownership, grants and audit logging. - Keep repository access separate from Copilot runtime authentication. - Probe the selected environment without sending a model prompt and preserve authenticated model selection through save/reopen. - Keep fresh execution admission consistent with normal Copilot setup; persist task model choices without changing provider or permission policy. - Refresh authenticated models after reconnecting the same saved Copilot account, including recovery from a previous authentication error. - Apply the additive provider-default constraint migration through the normal generated migration workflow. ## Verification Runtime #15701 is merged at `d855e550ad8d2a267312983f26457aabf5393c3a`. History #15703 is merged at `df80616d98119cbf5abd40549794d9980a5fabf6`. Remaining source [`42bcbd61299655f7e37aabe6bb5f19bba770ad1d`](https://github.com/paperclipai/paperclip/commit/42bcbd61299655f7e37aabe6bb5f19bba770ad1d) contains the four-file authorization repair. The remaining PR trees preserve six nonoverlapping files from the newer public mainline managed-settings fix and the CI-owned lockfile. No unrelated provider is enabled. The security finding is repaired: existing-agent discovery requires `agent_config:update` before connection selection or token resolution. The saved environment is the default. Authorized editors can select a prospective environment. Both denied board-viewer and agent-reader regressions fail on the original source. All49 route tests and server typecheck pass with the fix. Denied requests perform no connection selection, credential resolution or probe. Current-head security scans pass on both remaining PRs; the repaired thread is resolved. Copilot CLI1.0.88 and profile47 retain digest `sha256:55044aa235e88b3fe36ec8a556ee1e3382590870aab907e4462ef7d64af49cea`. The [qualification record](https://github.com/paperclipai/paperclip/blob/42bcbd61299655f7e37aabe6bb5f19bba770ad1d/doc/plans/2026-10-20-copilot-qualification-v47.json) reports20/20 Product cells,154 assertions and7/7 protocol cases,46 assertions against frozen normal installed source `c2616370800f5f6df45246b0890ba35a7cd2faab`. The exact qualification model is `gpt-5.6-luna`. Every passing Product case confirms cleanup. Original failures remain recorded; automatic behavior retries are disabled. The route-only authorization repair changes no bound runtime/profile bytes and does not relabel the frozen campaign. The ordinary installed remote journey passed saved-token selection, model discovery, normal UI save/reopen, metadata-only Test, completed task, accepted receipt and exact19-byte browser download. An open model catalog caused no additional discovery requests during117seconds. Actual installed runtime smokes passed on macOS ARM64, macOS x64 under Rosetta and native Linux x64 on Daytona. Raw token browser entry was not exercised; encrypted connection creation used the normal API. The first Daytona file attempt timed out during delayed semantic dispatch; its precise stalled layer remains unresolved. Independent ordinary remote delivery and the other19 Product cells passed before one instrumented recheck passed8/8 with unchanged source,prompt,assertions and deadlines. No causal latency repair is claimed. Before the authorization repair, all four final PR heads passed required verify/E2E and fresh Greptile5/5 reviews with zero unresolved threads. Current-head CI/review is running for the two repaired heads. Local focused checks retain129 connection,59 runner,72 shared-eval and88 recovery/workspace passes, plus migration safety and token gates. The additive Copilot migration is361; released master history is preserved. [Cloud normal-package run39414239704](https://github.com/paperclipai/paperclip/actions/runs/39414239704) builds the pre-security source4f3f. All four native producers and Linux package assembly pass; the final clean installed consumers are finishing. All18 retained archives match their hashes;37,863 regular files contain zero selected credentials. That package does not contain the later route repair. The actual final published package must include it and pass the local/Daytona live canaries. The frozen Daytona image remains published and independently verified. No separate full-image scan is claimed. Docker builds run in the cloud. **Remaining:** current-head CI/review, setup and qualification merges, final publication, and ordinary local/Daytona canaries against the actual shipped package. The user explicitly authorizes the maintainer review override; CI remains a merge gate. No production deployment is claimed. Provider USD remains unknown and GitHub-attributed. ## Risks Bad credentials, missing entitlement, runtime installation and unavailable models must remain distinct failures. A connection must not adopt ambient credentials. The constraint migration changes accepted provider values, with no credential-storage migration. Current-master NewAgent fixture extraction is retained. Copilot cases use that shared support and test both passive discovery and explicit reconnect under the same setup lifecycle. The onboarding retry regression shares the component suite’s saved-connection, authenticated-model, draft, agent-list, hire and render lifecycle fixtures. Keeping it beside the existing onboarding failures makes adoption versus duplicate hire observable under the same lifecycle; this is the concrete cohesion reason for the existing large test file. ## Model Used OpenAI Codex, based on GPT-6. The exact serving model ID and context window are not exposed in this task. Used for code changes, review and tool-assisted verification. ## Checklist - [x] I have included a thinking path that traces from project context to this change - [x] I have specified the model used (with version and capability details) - [x] I have checked ROADMAP.md and confirmed this PR does not duplicate planned core work - [x] I have searched GitHub for duplicate or related PRs and linked them above - [x] I have either (a) linked existing issues with `Fixes: #` / `Closes #` / `Refs #` OR (b) described the issue in-PR following the relevant issue template - [x] I have not referenced internal/instance-local Paperclip issues or links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip` URLs) - [x] My branch name describes the change (e.g. `docs/...`, `fix/...`) and contains no internal Paperclip ticket id or instance-derived details - [x] I have run tests locally and they pass - [x] I have added or updated tests where applicable - [x] I have updated relevant documentation to reflect my changes - [x] I have considered and documented any risks above - [ ] All Paperclip CI gates are green - [ ] Greptile is 5/5 with no open P2s, recommendations, or follow-ups - [x] I will address all Greptile and reviewer comments before requesting merge --------- Co-authored-by: Paperclip <noreply@paperclip.ing>	2026-10-20 07:02:22 -05:00
DottaandPaperclip	45b67f1d93	feat: default new Apple Silicon Claude agents to Paperclip Runner (#15993) ... ## Thinking Path > - Paperclip lets users choose an agent harness and account. > - The server resolves the runner for new agents. > - Claude still needs the same ordinary native-default journey as Codex. > - Existing agents must retain their runner, model and account. > - This PR defaults new Apple Silicon Claude agents to Paperclip Runner with Opus 5.5. > - Users can connect and work without a runner override. ## Linked Issues or Issue Description Refs #15683. This PR depends on #15994 and precedes #15997. Related scope: #15422, #13978 and #15224. ## What Changed - Resolve new Apple Silicon Claude agents to `paperclip_runner`, `provider: acpx`, `acpxAgent: claude`. Keep explicit Legacy, models, provider routing and saved execution. - Use `claude-opus-5-5` for ordinary Claude defaults and retain explicit overrides. - Reuse existing API-key/subscription connections, credential storage and checks. Generalize the shared Advanced runner control with Claude branding. - Carry configured effort into the shared v9 contract. Preserve compatible permissions, instructions, skills, timeouts and session behavior. Require Legacy for unsupported settings. - Qualify a new immutable managed Claude target at explicit Connect through the existing permission-gated probe. Use fresh scoped discovery for test and hire. Discard stale results and require an explicit Connect after settings change. - Retain merged Codex onboarding recovery, auth preparation, import/effort corrections and Grok Bot gates. - Check the Claude first-task wizard's saved default directly. Update configuration/runtime documentation and exact Opus 5.5 accounting. - Align hire fixtures with the merged host-environment restriction. Native agent-authenticated hires cannot inject host env settings; both creation endpoints verify that no extra agent is saved. ## Verification - Updated onto master `9179d8dcc3e908c217fde4f63c9d08ccf8132eeb` through #15994. Native input v9 carries effort while preserving v7 home modes and v8 Muse. Codex defaults remain unchanged. - Focused local verification passed 285 server tests, 323 UI tests, 124 setup/registry tests, and two v9 permission-pin transport cases. Direct server/UI TypeScript checks passed. An initial 30-second hook timeout was resolved by serial verification with a longer hook budget: all 122 credential/permission cases and 232 snapshot/environment cases pass. Direct server TypeScript checking also passes. - Ordinary web creation with the experiment disabled saved native Claude, Opus 5.5 and High effort without runner/model overrides. The actual product task and follow-up both succeeded on integrated source `b2c9fe43f9cd3bc5dd9d22552da0148845ba71a4` with the cloud-built daemon from `04e0202ca81387b17cbe7fd094a8338648356fe9`. The final master reconciliation also changes shared runtime source. Historical proof retains its source identity; a final-source cloud qualification is running before refreshing the preview daemon. - Both actual browser downloads were checked: v1 has three sections/six checkboxes (451 bytes); v2 preserves the original body and adds two Rollback checks (612 bytes). The original attachment stayed byte-identical. The follow-up records session resume and the same provider session. Total estimated API usage: $0.518432800, with no pending/unpriced usage in the successful fixture. - Fixed the live-discovered setup incompatibility: native API-key validation no longer depends on the global Legacy Claude CLI. The existing provider endpoint verifies the key without a paid prompt; subscription/custom routing probes remain intact. - Fixed security review's native-hire credential redirection: agent-supplied URLs, proxy/launch settings and other host environment controls are rejected before inheritance. Native credential references remain supported and partial edits use the saved harness. Added create/hire/update regression coverage. - Current-head cloud CI is green. All three stack PRs have fresh Greptile 5/5 reviews and zero unresolved review threads. Required typecheck, test and build gates ran in cloud CI; Docker work stayed remote. Earlier failed checks remain in their original runs. - Docker and native release builds ran in cloud infrastructure. An inadvertent local Rust prerequisite was stopped; no local Docker build was run. - The final master merge preserves task-loading, permission, skill-retention and OpenRouter changes. Pi uses a fresh combined profile 27, preserving both historical profile-24 declarations; Copilot remains profile 22. Focused protocol checks passed 155 cases (one skipped), the updated Pi attestation check passed 18 (one skipped), and 91 evaluation/catalog checks passed. - Latest-application manual continuation passed in 37.942 seconds on `695e5c005a85bddc8711d3fcddcaf6b7e1fb64d0`, with High effort, native Opus 5.5, Anthropic API attribution, the same resumed Claude session, an independently checked 635-byte file and persisted Done status. It uses the earlier verified Mac daemon; the preceding-source package qualification passed at `dca62c7aeb4b45f0dd91a8e18d386a16a2658ef8`. That package run predates the small TypeScript startup fix and is not relabeled as qualification for it. - Upgrade limitation: changed compiled sidecar identity rejected old durable launch state and recovery hit session-open bounds before eventually resuming. That attempt was operator-cancelled and retained; the successful manual continuation does not qualify seamless upgrades. - Local latency profile, Opus 5.5/High unchanged: three alternating real-ACP loopback samples per variant reduce median provider-ready time from 5.081s to 4.034s. The matched real API task startup improves from 5.533s to 4.348s, but total reply time changes from 17.933s to 20.221s because agent work varies. This establishes a startup saving of about one second, not a consistent total-reply speedup. A real candidate follow-up passed in 20.146s and resumed the same saved session. The loopback fixture makes no external model requests; failed initial probes remain retained. - The startup change passes 107 focused runtime/effort/lease tests, 53 profile checks (one skipped), TypeScript checking and the TypeScript-only runtime build. Native hire fixture checks pass 70 tests; their first local run retained a socket-hangup failure and stale OpenCode expectation, both accounted for before the passing rerun. Broader required checks run in cloud CI. ## Risks - Missing packages, authentication rejection, unsupported settings and unavailable models must fail explicitly. Existing agents retain saved execution; explicit runner changes use existing revision/session invalidation. - Subscription follow-up remains unverified; remaining live acceptance uses API keys per human steering. Historical accounting holds and the separate $50 ceiling remain intact. - The subscription acceptance limit remains explicit for review. No Claude database migration is introduced. ## Model Used OpenAI Codex, GPT-6 family, with reasoning, repository tools, code execution and browser testing. The exact serving model ID and context-window size are not exposed in this session. ## Checklist - [x] I have included a thinking path that traces from project context to this change - [x] I have specified the model used (with version and capability details) - [x] I have checked ROADMAP.md and confirmed this PR does not duplicate planned core work - [x] I have searched GitHub for duplicate or related PRs and linked them above - [x] I have either (a) linked existing issues with `Fixes: #` / `Closes #` / `Refs #` OR (b) described the issue in-PR following the relevant issue template - [x] I have not referenced internal/instance-local Paperclip issues or links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip` URLs) - [x] My branch name describes the change (e.g. `docs/...`, `fix/...`) and contains no internal Paperclip ticket id or instance-derived details - [ ] Focused local tests and final cloud verification pass - [x] I have added or updated tests where applicable - [x] I have updated relevant documentation to reflect my changes - [x] I have considered and documented any risks above - [x] All Paperclip CI gates are green - [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups - [x] I will address all Greptile and reviewer comments before requesting merge --------- Co-authored-by: Paperclip <noreply@paperclip.ing>	2026-10-19 13:58:52 -05:00
DottaandPaperclip	2cc7992369	Share the external Runner lifecycle and add strict Muse contracts (#16444) ... Add the external Runner foundation with distinct Dot/Grok V6, canonical home-mode V7 and Muse V8 contracts. Keep generated schemas and profiles synchronized. Bound default question-answer command IDs in a disjoint namespace while preserving existing IDs and durable replay. Preserve canonical migration history and add normally generated, replay-safe Muse schema milestones with literal preview-history fixtures. Refs #16444. Co-Authored-By: Paperclip <noreply@paperclip.ing>	2026-10-16 13:46:50 -05:00
Nicky LeachandPaperclip	fa9f3f8a08	feat(runner): support preconfigured user homes for Codex and ACPX (#16486) ... ## Thinking Path > - Paperclip manages AI agents and their work. > - Runner launches the selected provider and keeps durable session state. > - Runner currently prepares private provider homes for each session. > - Operators can already have working login, skills, and MCP configuration on the execution machine. > - This PR adds an explicit mode that uses that existing setup. > - Runner keeps its task bridge and session ownership while leaving the user's configuration in place. ## Linked Issues or Issue Description **Problem or motivation:** Rebuilding a provider home is unnecessary when the execution account is already configured. **Proposed solution:** Add `homeMode: "preconfigured"` to Runner adapter config and runnerd transport options. Keep `"isolated"` as the default. Initially support native Codex and ACPX Claude. **Alternatives considered:** Continue copying user configuration into a private home, or add an approval workflow. Both add work outside this feature's scope. **Roadmap alignment:** This extends the existing cross-provider Runner. It does not add another runtime. Related work: #14056 covers managed Codex credentials. #14474 covers command environment delivery. This mode uses user-owned credentials and retains the existing launch boundaries. ## What Changed - Add a closed v7 launch contract for the selected home mode. Existing contracts retain their behavior. - Keep homeMode under operator control. Reject task overrides and agent-authenticated changes, including removal through replacements, adapter changes, or rollback. Ignore stored task values and exclude it from automatic hire inheritance. - Skip managed AI login, assigned-skill materialization, and external MCP setup in preconfigured mode. Preserve the Runner task/completion bridge. - Keep protocol state and provider lifetime fences scoped to the Runner session. Different sessions can share a home. - Fail preconfigured ACPX planning/read-only launches before provider admission until a read-only user-home launch is qualified. Use isolated mode or native Codex for planning. - Reject ACPX approval requests. Keep native Codex on `never`. Local permission rules and hooks remain effective. Initially require the default Runner ACPX `approve-all` setting; other Runner policies are unqualified in this mode and fail before launch. - Keep the internal ACPX bridge in a stable session namespace, preserving an existing user MCP server named `paperclip`. - Reject preconfigured ACPX Codex before launch until a session permission profile can enforce Runner-state denial. Remove the unprotected full-access mode switch; use native Codex or isolated mode for that model family. - Bump Pi to profile 23 because its attestation covers shared Runner source changed here. Preserve profile 22 for historical recovery, and update Docker/package verification inputs. - Fence recovery on mode and home bindings. Fail missing provider-history recovery without starting a replacement session. Exclude the external Codex home from backups and credential cleanup. - Discover remote HOME on the execution machine. Do not project controller HOME or XDG paths onto it. - Separate task instructions from Codex ACP isolation and update the generated provider digest. - Keep remote configured-environment manifests consistent when dropping controller paths. Preserve exact Claude model IDs through per-launch environment settings, without editing the user home or patching the provider. ## Verification - Targeted local checks cover native contracts and launch allowlists, user-config preservation, provider admission, permissions, session recovery, remote environment projection, heartbeat preparation, and operator-only configuration. Runner, shared, and server TypeScript checks and the Rust binary build pass; generated ACPX profiles are current. - Following the latest master integration, all 757 server configuration/executor tests and 115 Runner admission/recovery tests passed. Additional review-fix checks passed: 103 planning contract/host tests, 78 provider-backend tests, 95 route/preparation/inheritance tests, 43 task-validator tests, and 43 workspace-policy tests. Counts describe separate runs and can overlap. - The real pinned Claude ACP/SDK regression reproduces exact-model aliasing without the fix (`claude-sonnet-5-5` becomes `sonnet`) and passes with the fix. All 89 adapter tests pass. User settings remain byte-for-byte unchanged. - Localhost-only Claude SDK probes with synthetic credentials verify the private bridge runs, local `ask` reaches the existing reject callback, local `deny` blocks without a callback, and a user MCP server named `paperclip` remains available. No user model allowlist is required. - Review regressions cover fail-closed provider admission, saved-mode recovery before routing, controller-home path removal without configured-environment manifest drift, pre-launch rejection of unqualified read-only ACPX launches, and denial of task/agent changes to the operator-owned home mode. - Before rebase, `d4d4ee2aebe4cb88c4f4d9ef8e22fed4b36b87be` received standard Greptile 5/5 with no unresolved threads. Prior Apex findings are fixed and covered by regressions. No manual Greptile retrigger is requested for this rebase, per reviewer direction. - The prior PR head and master hit the same GitHub runner encoding crash in workspace-b on three PR attempts, including diagnostic logging ([prior PR CI](https://github.com/paperclipai/paperclip/actions/runs/38818474563/job/116714538405), [prior master CI](https://github.com/paperclipai/paperclip/actions/runs/38819528748/job/116712423193)). Rebased onto `origin/master` at `c3ffa3f0dd` to pull in its bridge-test index correction. The rebased head `edd153db410bea063b645e0000aa68649f287b00` passes all CI checks ([CI run](https://github.com/paperclipai/paperclip/actions/runs/38824676914)), including workspace-b. Greptile's automatic standard review is 5/5 on this exact head, with no unresolved threads; no manual review was requested. - Local workspace-b investigation passed 911 shared tests and 3,868 tests across the remaining 15 workspace projects. The catalog run separately hit an existing ignored `.agents/skills/design-guide/SKILL.md` description-budget violation in this checkout; that file is untracked, outside the PR, and left untouched. Repeating shared tests with CI reporting enabled also passed. - Rebase verification: the final Git tree exactly matches the previously reviewed branch combined with current master. All 192 Runner admission/contract tests, 61 server preparation/provider tests, and 68 bridge tests pass, as do Runner/server TypeScript and generated-profile checks. The real Claude adapter fixture hit an `ENOTEMPTY` cleanup race on its initial run; all 89 adapter tests passed on retry. - Apex on rebased head `edd153db` returned 2/5: ACPX Codex selected full access without enforcing Runner-state denial, and agent configuration replacement could remove the operator mode. Both are fixed in `26e14dbbf`. Preconfigured ACPX Codex is temporarily unqualified; re-enabling it requires session permission enforcement on thread/turn operations and a real filesystem-denial probe. The config guard covers effective replacements, adapter changes, and rollback while allowing ordinary agent merges and operator removal. All 190 focused Runner tests, 103 server tests, both typechecks, and generated-profile checks pass. Standard review and CI passed before the next Apex request. - CI on `26e14dbbf` passed 1,967 Runner-shard tests but hit the previously observed `ENOTEMPTY` fixture cleanup race after successful Claude model admission. `eb83284fb` adds bounded filesystem retries to that fixture's teardown; all 87 adapter tests pass. Assertions and production cleanup behavior are unchanged. Head `eb83284fb42ee19a15d9a93b106c1bbb07e1695e` passes all 59 CI checks ([CI run](https://github.com/paperclipai/paperclip/actions/runs/38829500857)) and standard Greptile at 5/5 with no unresolved threads. Apex also completed at **5/5** on that exact head ([Apex result](https://github.com/paperclipai/paperclip/pull/16486#issuecomment-6201559527)). All review threads are resolved, the branch has no merge conflicts, and the PR remains unmerged. - No live paid-provider or remote-machine smoke was performed. The lockfile remains unchanged under the repository's refresh-bot policy; local dependency installation resolved the changed patch hash. ## Risks This explicit opt-in grants Codex tools access to the execution home (read-only in planning), including credentials. Native Codex separately denies Runner-owned protocol state. ACPX Claude retains its existing provider trust boundary, and the isolated default is unchanged. Providers may refresh credentials and update their own metadata. User configuration can block tools or the completion reporter. Existing blocked results and failure diagnostics remain the recovery path. Edit the local settings and retry; no new approval workflow is added. External provider history remains on the execution machine and is not backed up by Runner. Remote HOME discovery requires `getent` and fails explicitly when unavailable. Other harnesses need separate qualification. The Codex ACP bundle digest changes. Existing sessions tied to the old bundle may need a fresh session. No database migration is required. ## Model Used OpenAI Codex, GPT-6, with reasoning and code execution. The exact runtime model ID was not exposed. ## Checklist - [x] I have included a thinking path that traces from project context to this change - [x] I have specified the model used (with version and capability details) - [x] I have checked ROADMAP.md and confirmed this PR does not duplicate planned core work - [x] I have searched GitHub for duplicate or related PRs and linked them above - [x] I have described the issue in-PR following the feature issue template - [x] I have not referenced internal/instance-local Paperclip issues or links - [x] My branch name describes the change and contains no internal ticket id - [x] I have run targeted tests locally and they pass - [x] I have added or updated tests where applicable - [x] I have updated relevant documentation to reflect my changes - [x] I have considered and documented risks above --------- Co-authored-by: Paperclip <noreply@paperclip.ing>	2026-10-15 17:57:58 -07:00
Nicky LeachandPaperclip	c30fb7d2b7	refactor(core): share Runner execution lifecycle (#16318) ... ## Thinking Path > - Paperclip is the open source app people use to manage AI agents for work. > - Core starts Runners in local, SSH, and sandbox environments. > - Coding runs, Dot runs, and setup probes repeat connection setup code. > - These paths must keep the same preparation, authentication, and cleanup order. > - This pull request gives them one execution lifecycle contract and one server connection driver. > - Core keeps the existing PRP control plane after connection. > - The benefit is one place to maintain environment routing before adding another execution provider. ## Linked Issues or Issue Description **What existing behavior does this improve?** Runner environment preparation and connection setup across local, SSH, and sandbox execution. **Current behavior** The coding transport owns the environment hook type. Dot borrows that type. The server repeats connection selection, registration, ingress activation, and release in task execution and setup probes. Changes to one path can miss another path. **Proposed behavior** Use a shared `RunnerExecutionDriver` contract. Route built-in task execution and remote setup probes through `createNativeRunnerExecutionDriver`. Keep provider session setup, process supervision, PRP commands, and recovery logic on their existing paths. **Reason and benefit** Environment code can prepare resources and provide a connection without adding another PRP execution path. The same driver preserves local loopback, remote outbound WSS, and authorized sandbox ingress. **Breaking changes** None intended. Existing flat SDK options remain compatible. This is an in-process contract. It does not add a plugin wire contract or Launcher APIs. **Additional context** Related: #15406 proposes plugin-provided Runner execution. This change starts from `master` and does not depend on that PR. It extracts the existing lifecycle before adding another provider. Related: #16125 covers remote environment support for external adapters; this PR does not implement that feature. ## What Changed - Extract and export `RunnerExecutionDriver` from the coding transport. Use it for coding and Dot options. - Share server connection negotiation across coding runs, Dot runs, and remote setup probes. - Preserve outbound validation before staging, capability checks before ingress, process dispatch before ingress connection, and verified process readiness. - Preserve warm run registration, restart guards, checkpoint hooks, and cleanup ownership. - Add 13 focused driver tests and document the lifecycle boundary. ## Verification - Targeted server execution and recovery tests: 728 passed, 35 skipped. These cover `native-session-executor`, `native-ssh-command-runner`, the new driver, warm restart transitions, and Runner restart recovery. - Targeted setup and driver tests: 109 passed after the review fix. Twelve driver tests overlap with the preceding count. The added test verifies that failed CA staging cannot leave a PRP route behind. - Runner connectivity tests: 11 passed. - Runner package lifecycle tests: 287 passed across coding transport, Dot, restart continuation, and settlement. These exercised the compiled Rust Runner. - `pnpm -r typecheck`: passed. - `pnpm build`: passed. - `git diff --check`: passed. Local secret-pattern scan: clear. - The PRP transport runtime and remote process launcher remain unchanged. A byte comparison against the base confirmed this. - CI passed on `b10789dfce30a837ce890f44e352064c7a74366f`: all 55 active checks are green, including the full test shards, Runner checks, browser tests, typecheck, build, and aggregate gate. Greptile scored this commit 5/5 with no unresolved findings. - An earlier broad local shard run was not green: 34,888 passed, 12 failed, and 4,125 skipped. Failures were ten timeouts and two Git fixture assertions affected by local `init.defaultBranch=main`. Isolated retry passed all six non-route timeout suites (427 tests), two route suites, and both Git assertions with a test-process-only `init.defaultBranch=master`. The agent live-run route retry still timed out. No unrelated source changes were made. Further broad local runs were stopped at the user's request. Targeted commands: ```sh cd server node ../node_modules/vitest/vitest.mjs run src/services/native-runtime/native-session-executor.test.ts src/services/native-runtime/native-ssh-command-runner.test.ts src/services/native-runtime/native-runner-execution-driver.test.ts src/services/native-runtime/native-warm-transition-restart.integration.test.ts src/services/native-runtime/native-runner-restart-recovery.integration.test.ts --config vitest.config.ts node ../node_modules/vitest/vitest.mjs run src/services/native-runtime/setup-readiness.test.ts src/services/native-runtime/native-runner-execution-driver.test.ts --config vitest.config.ts cd ../packages/paperclip-runner node ../../node_modules/vitest/vitest.mjs run src/live/runnerd-codex-transport.test.ts src/drivers/dot/runnerd-dot-driver.test.ts src/live/runnerd-restart-continuation.test.ts src/live/runnerd-codex-transport-settlement.test.ts --maxWorkers=2 cd ../.. node node_modules/vitest/vitest.mjs run packages/adapter-utils/src/runner-connectivity.test.ts ``` ## Risks - Startup ordering and connection cleanup are sensitive. Focused tests cover local registration, outbound validation, CA mapping, ingress ordering, release, and warm authority guards. - No live SSH host or sandbox provider was used. Existing mocked remote tests and real local Runner tests passed. - No database, PRP wire protocol, or Launcher API changes are included. ## Model Used OpenAI GPT-6 via Codex, with tool use and code execution. The served model variant and context window were not exposed to this task. ## Checklist - [x] I have included a thinking path that traces from project context to this change - [x] I have specified the model used (with version and capability details) - [x] I have checked ROADMAP.md and confirmed this PR does not duplicate planned core work - [x] I have searched GitHub for duplicate or related PRs and linked them above - [x] I have either (a) linked existing issues with `Fixes: #` / `Closes #` / `Refs #` OR (b) described the issue in-PR following the relevant issue template - [x] I have not referenced internal/instance-local Paperclip issues or links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip` URLs) - [x] My branch name describes the change (e.g. `docs/...`, `fix/...`) and contains no internal Paperclip ticket id or instance-derived details - [x] I have run the stated targeted tests locally and they pass - [x] I have added or updated tests where applicable - [x] I have updated relevant documentation to reflect my changes - [x] I have considered and documented any risks above - [x] All Paperclip CI gates are green - [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups - [x] I will address all Greptile and reviewer comments before requesting merge --------- Co-authored-by: Paperclip <noreply@paperclip.ing>	2026-10-14 12:58:05 -07:00
DottaandPaperclip	d67e3507b2	feat(runner): qualify Codex platform packages and cache hosted builds (#16028) ... ## Thinking Path > - Paperclip is the open source app people use to manage AI agents for work. > - Native execution needs a compatible installed daemon and provider dependency. > - The Codex-default work found missing platform packages and clean-install startup failures. > - Release builds also repeat dependency compilation and run preparation serially. > - This prerequisite packages four daemon targets and verifies installed native startup. > - It also caches hosted Cargo dependencies and overlaps JavaScript preparation with compilation. > - Agent creation defaults and experimental gates stay at the current master behavior. ## Linked Issues or Issue Description Refs #15683. Refs #15555. Refs #15422. Refs #15926. Refs #15932. Extract runtime and installation support from #15683. This prerequisite has 65 changed files. Creation, onboarding, imports, UI runner selection and graduation remain in the dependent PR. Feature/access maps and the Storybook source catalog stay synchronized. Existing agents keep their execution choices. ## What Changed - Correct the existing runner test fixtures. Reserve owned credential quorum listeners through the existing bounded fixture helper. Keep foreign listeners intact, run actual credential staging once, and preserve its rejection and unchanged-auth assertions. Reuse the durable-resume outer-limit correction. Wait for actual warm-completion and held-authorization callback entry under the existing recovery deadline and surface early request errors. Preserve every semantic assertion. - Retain bounded installation failure diagnostics through the existing qualification receipt upload. Keep the original error, 10-minute deadline and all success checks. - Keep startup ownership until credential preparation and registration drain. Reject duplicate and post-close startup/resume work. Observe shutdown during normal and adopted authentication readiness. Preserve the primary failure and retain private state when cleanup is unconfirmed. - Package Linux x64/ARM64 and macOS Apple Silicon/Intel daemons. Verify target headers, source identities, manifests, and hashes before assembly and installation. - Reuse the existing release producer/consumer workflows. Cache Cargo dependencies by target, OS, compiler, lockfile, and contract inputs. Rebuild workspace binaries. Permit trusted cache writes only for canonical exact-source master pushes. - Overlap JavaScript preparation with native compilation. Join both commands and failure/cancellation cleanup before artifact verification. - Preserve shell positional arguments in the shared SSH runner and apply environment assignments correctly. Reject environment option keys. Six before/after controls and two real SSH subprocess paths pass with zero provider calls; this fix lands before both Codex and Claude defaults. - Admit verified suspended SSH backups during cold controller continuation, using the same full-scope, integrity and lifecycle checks as sandbox targets. Two positive SSH cases fail before; all 14 positive/negative matrix cases pass afterward. Active ownership and corrupt/malformed/nonempty state remain rejected. - Record measured sandbox platform facts through the existing explicit environment probe. Bind facts to the company, effective provider configuration, immutable OCI image and actual captured image binding. Check the returned cleanup receipt. Reject client-authored proof and stale or named boot identities. Creation and discovery allocate nothing. Preserve connection-only behavior. - Resolve the actual remote Codex target and preserve same-host development overrides. Preserve runtime artifact verification. Use actual protocol/model compatibility rather than a numerical CLI version fence. - Resolve the installed Codex login dependency on 64-bit Linux and Mac independently of the daemon libc baseline. Preserve account homes and safe errors. - Fix actual clean-install TOML table comparison. Preserve strict semantic checks, comments, private writes, and malformed-input rejection. Preserve primary startup failures and bounded cleanup. - Document GNU libc 2.39+ and stock Ubuntu sandbox prerequisites. Qualify ARM startup with a scoped distribution profile and unchanged global restrictions. Preserve Windows and Alpine deferral. - Preserve selected and saved native Codex reasoning effort in the existing UI builder, while excluding it from other providers. This small shared correction prevents import edits higher in the stack from dropping effort. - Reuse existing installed-package checks and assertions. Paperclip tarballs contain no Codex native payloads. Official npm dependencies supply the consumer's Codex binaries. All Docker and native builds stay remote. ## Verification Candidate: `271d434c170e74bdedde65d0b13059a55419c943`. It includes current master `e168512f7bdbb6af6ea01954c6d7ed80b91e903e` and preserves prior candidates through ordinary commits. Current [full CI](https://github.com/paperclipai/paperclip/actions/runs/38346601686) is successful on attempt 2. GitHub reports 54 successful checks and four conditional skips, including required verify and browser aggregates, workspace typecheck/tests/build, Linux DB controls, both runner shards and [isolated native compilation](https://github.com/paperclipai/paperclip/actions/runs/38346601609). Fresh current-head Greptile is 5/5 with all four threads resolved. The passing build's clean Grok/Codex report records CI merge source `7a82a37438e6e448abc7cc5caa60dc2519a97be0`, 18 installed packages, omitted Codex payloads, official host-only npm dependencies and zero provider calls. Pi setup and its no-prompt lease verification also pass. The first attempt's single 60-second Node archive download timeout remains retained; its DNS/TLS/download cause remains unknown. One unchanged-source retry was requested through the normal Build-job dialog with debug logging disabled. GitHub's attempt 2 graph reports the other CI jobs as well; no second retry or source/deadline relaxation was made. The [final exact-source package campaign](https://github.com/paperclipai/paperclip/actions/runs/38347027535) is successful on literal `271d434c170e74bdedde65d0b13059a55419c943`. It passes all four native producers, public Linux package assembly and clean installed consumers on Apple Silicon, Intel Mac and Linux ARM64. The nine qualification-mode skips are intentional; full CI above covers their ordinary gates. Native builds and Docker assembly ran remotely. The predecessor [`dae808` package campaign](https://github.com/paperclipai/paperclip/actions/runs/38342104102) remains literal historical evidence. Only tests and the dated record differ from that source; runtime, package and workflow code is unchanged. The reused credential fixture correction passes all 42 canonical Node 24 controls with synthetic data and independent matching-source review, and the current hosted runner shard passes. Production credential behavior is unchanged. **Merge hold:** current-source CI, fresh 5/5 review and exact-source package qualification pass. Actual code-owner approval and normal protected merge remain pending. No slice has merged or deployed. GitHub CLI authentication needs refresh; the normal signed-in embedded GitHub UI provided this status without credential workarounds. - The master merge preserves both Storybook source-review appendices and the guarded test-home cleanup. All six existing cleanup controls pass without skips. Master's isolated-home helper/test/setup are byte-identical. The two existing whitespace lines in master's unrelated privacy test remain outside this PR's diff. - Canonical Node 24 passes all 24 existing public-install helper tests. Three narrow added cases prove bounded/redacted failure metadata, symlink exclusions, original exception identity, failed diagnostic writes and no false failure on success. The Mac installer now uses `--timing`; at most two 16 KiB tails and 32 structured entries per tail enter the existing receipt upload. Raw argv, URLs, environment, error text and stacks are omitted. A failed receipt explicitly remains FAILED/unqualified/runtime-not-attempted. The 600,000 ms install deadline and every real package/hash/payload/lock/lifecycle/runtime oracle are unchanged. - Canonical Node 24 reproduces the durable-resume outer timeout under controlled fake latency. Only its outer test limit changes to 15 seconds; internal 500 ms/5 second deadlines and usage/effect assertions remain. Controlled warm-recovery and before-bootstrap authorization scheduling delays reproduce their callback polling failures, while the explicit entry signals pass. Early recovery errors surface unchanged. Independent review is clear. Historical mock binaries support the fixture controls; fresh full hosted CI remains decisive. The original hosted callback failure cause is inconclusive. - The composed runner/surfaces/server/E2E TypeScript checks pass. Map checks pass 35 areas/171 capability IDs. Token gates pass. The existing Storybook catalog passes 223 files/2,210 stories; story IDs and classifications remain intact. The current master had 25 inherited stale fingerprints from three changed map recipes. Only those guarded fingerprints and a source-only review note change; all 92 non-map story/component/fixture inputs remain unchanged. Existing classifications are retained. This proves source structure, not visual or live acceptance. - The 65-file contribution audit has no code file crossing from below 1,000 lines to above the limit. Earlier comment cleanup preserves executable emissions, parsed workflows and action pins. Independent cleanup/catalog and three-file reporting reviews are clear. No new workflow, suite, grader or local native/Docker build was added. **Prior `dae808` gate evidence:** fresh Greptile is 5/5 with four resolved threads, isolated native compilation and the browser aggregate pass. Its first runner shard passes the previous two corrections but fails a different held-authorization cell at the implicit one-second polling deadline. It records 1,672 passes/one failure/three skips. This candidate applies the verified entry-signal correction without changing production deadlines or any semantic assertions. Its original hosted cause remains inconclusive until fresh CI. **Previous-source evidence, kept literal:** the [exact `16a532` package campaign](https://github.com/paperclipai/paperclip/actions/runs/38338806076) passes all four native producers, public Linux package assembly, Apple Silicon, Intel Mac and Linux ARM64 installed consumers. Its fresh review is 5/5 with all four threads resolved. Full CI records 52 successful checks, four conditional skips and the two fixture failures corrected here. This is not a green full-CI candidate or proof for the new source. `64c074fb8da1b31f8d6042c4fef48dc4164e759b` passed [full CI](https://github.com/paperclipai/paperclip/actions/runs/38332726938), 54 checks/four conditional skips, [isolated native compilation](https://github.com/paperclipai/paperclip/actions/runs/38332726787/job/115085895328), and fresh Greptile 5/5/all four resolved threads. The hosted transport suite passed 246 tests and startup trust passed 22, closing that source's local fake-binary limitation. These are historical after reconciliation. The [previous exact-source package campaign](https://github.com/paperclipai/paperclip/actions/runs/38332921463) built all four platform daemons and passed public Linux package assembly plus Apple Silicon and Linux ARM64 installed consumers. **Intel Mac failed:** its initial scripts-disabled npm install timed out before lifecycle/runtime assertions. The underlying download/resolution/host cause is unknown because the old helper deleted the npm logs. This is the concrete baseline for the diagnostic change. The failed campaign remains failed; no all-platform signoff or automatic retry is claimed. The earlier `a200495` [four-target campaign](https://github.com/paperclipai/paperclip/actions/runs/38283695248) and [scoped ARM qualification](https://github.com/paperclipai/paperclip/actions/runs/38291535914) remain component evidence. Cargo restores were cold misses; no warm-cache speedup is claimed. Paperclip tarballs contain no Codex payloads. Official npm dependencies supply Codex on the user's platform. Current-source full workspace typecheck/tests/build, Linux DB controls, static/Rust/native tests, all browser shards and exact-source package consumers must pass. New-agent defaults and final managed onboarding belong to #15683. Actual private Cloud composition, warm/cold signup, task/follow-up and rollback compatibility remain later release gates. Source audits found that ordinary managed onboarding does not run the saved platform probe and Cloud distributes named snapshots without a verified final boot-image binding. These dependent release blockers remain open; prequalified E2E fixtures do not close them. Master adds task-workspace migrations; the final image/migrator and previous-image checks must include them. ARM paid task/follow-up and ordinary OS APT installation are not proven. ## Risks - Multi-target packages require source and header agreement. Missing or mismatched artifacts fail explicitly. Existing execution choices remain unchanged. - Linux requires GNU libc 2.39+ and compatible sandbox prerequisites. The scoped hosted ARM preparation does not qualify arbitrary containers or kernels. Windows, 32-bit ARM, and Alpine remain deferred. - Only dependency crates are cached. Preview jobs cannot write trusted caches. Concurrent command cleanup must preserve the primary failure. - Native-free Paperclip packaging retains official Codex npm dependencies. No Codex payload bundling, schema migration, automatic agent migration, or production deployment is included. ## Model Used OpenAI Codex, GPT-6 family, with reasoning, repository tools, code execution, and parallel agents. The exact serving model snapshot and context-window size are not exposed. ## Checklist - [x] I have included a thinking path that traces from project context to this change - [x] I have specified the model used (with version and capability details) - [x] I have checked ROADMAP.md and confirmed this PR does not duplicate planned core work - [x] I have searched GitHub for duplicate or related PRs and linked them above - [x] I have either (a) linked existing issues with `Fixes: #` / `Closes #` / `Refs #` OR (b) described the issue in-PR following the relevant issue template - [x] I have not referenced internal/instance-local Paperclip issues or links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip` URLs) - [x] My branch name describes the change (e.g. `docs/...`, `fix/...`) and contains no internal Paperclip ticket id or instance-derived details - [x] I have run tests locally and they pass - [x] I have added or updated tests where applicable - [x] I have updated relevant documentation to reflect my changes - [x] I have considered and documented any risks above - [x] All Paperclip CI gates are green - [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups - [x] I will address all Greptile and reviewer comments before requesting merge --------- Co-authored-by: Paperclip <noreply@paperclip.ing>	2026-10-13 06:24:07 -05:00
DottaandPaperclip	ed2c22ea8c	feat(connections): simplify dedicated GitHub App setup (#15416) ... ## Thinking Path > - Paperclip manages agent work and the tools each agent can use. > - GitHub bots need their own App identity and restricted repository access. > - Manual App configuration and repeated setup gates make that connection hard to finish. > - GitHub can create an App from a manifest, but people must approve creation and repository access. > - Each Paperclip stack should own configuration, credentials, signature verification, and task admission. > - This change uses Cloud as an encrypted callback and event gateway, then completes setup in the stack. > - GitHub review bots have their own experimental setting. Chat connector opt-in does not control them. ## Linked Issues or Issue Description **What existing behavior does this improve?** Dedicated GitHub App setup, bot settings, and task-scoped GitHub replies. **Current behavior** Users must configure an App, copy credentials, repeat repository selection, and complete manual verification gates. Review settings are hard to scan. Mentions in descriptions can be missed, and automatic completion text can produce an extra GitHub comment. **Proposed behavior** Choose an agent and connect GitHub under a personal account or organization. GitHub asks for creation and installation consent. Paperclip resumes the same draft, stores secrets locally, imports access, verifies delivery, and opens Settings. Each accepted request has one editable App-owned comment for progress and results. Review assessments produce deterministic checks for the reviewed commit. **Breaking changes** GitHub bots require their own default-off experimental opt-in. The setup-method and delegated-agent screens are removed. Per-person automatic-run flags remain readable but are replaced by author filters. Existing connections, direct webhooks, saved restrictions, and manual existing-App recovery remain supported. Companion gateway: https://github.com/paperclipai/paperclip-cloud/pull/688 (merged). The roadmap and related PRs were checked; no duplicate dedicated-App wizard was found. ## What Changed - Add an independent **GitHub review bots** setting across the catalog, routes, identity admission, and task controls. Existing bots continue running when the UI setting is off. - Replace setup with Choose agent and Connect GitHub. Support personal and organization owners, inline low-trust conversion, saved drafts, known organization suggestions, automatic completion, and same-App recovery. - Keep manifests, OAuth PKCE, credential exchange, vault storage, installation verification, and original webhook-signature validation in the stack. Use the Cloud sealed gateway for public callbacks and outbound local delivery. - Add resumable owner metadata in migration 0323. Retry a failed registration renewal through the same durable replacement rather than creating another App route. - Support authorized mentions in issue and PR bodies, comments, inline comments, and review summaries. Preserve attachments, edited-source identity, duplicate protection, and lifecycle invalidation. Filter requests explicitly addressed to another connected bot. - Give agents task-scoped review, comment, and update tools. Update one working comment through progress and final output. Close coalesced requests and recover delayed acknowledgements, including deleted earlier working comments. Preserve automatic replies for legacy connections without saved review configuration. Preserve partial publication evidence and quarantine uncertain automatic fallbacks without blocking Board messages or questions. - Reorganize Settings and Access with rich slash-skill instructions, numeric passing scores, clear automation controls, formal-review tooltips, member and contributor sections, and verified App branding links. Preserve invalid score drafts and automation choices across tabs. - Paginate repositories in 20-row batches with search and a true connection-wide toggle. Batch verification at GitHub's 500-ID token limit. Keep saved repository overrides while hiding their editor. - Give each review a detail URL that remains usable beyond the newest 100 records. Synchronize the manager OpenAPI contracts and add recovery, authorization, UI, and browser regressions. - Reconcile the current master branch and retain its agent avatar, feature catalog, and extracted heartbeat preparation code. Preserve a saved test-drive port and recover from an occupied high port. ## Verification - Focused UI, independent experimental-setting, and CLI tests: 199 passed. - `pnpm -r typecheck`, `pnpm build`, and `pnpm check:token-gates` passed. The broad local Vitest attempt was interrupted after resource timeouts and stale expectations; the affected regressions passed focused reruns. The latest-head full CI matrix passed, including all browser shards, server/chat suites, builds, typechecking, canary packaging, and Docker context integrity. A Docker Hub 429 required a CI retry; it passed without changing the code. - Final review repairs: 127 attachment/event tests and server typecheck passed. All 13 final integration regressions passed under the normal CI timeout, covering legacy reply compatibility, deleted coalesced comments, inline-only review completion, progress edits, and native final recovery. Restart-safe description/review attachments passed the attachment suite. - Final regressions: four reply/lifecycle tests, both native GitHub wait tests, 171 feature-gate/reply-contract tests, the routed review preview, and five scheduler/reply regressions passed. The final fixture repair also passed all six setup-continuation cases and all three complete chat-test shards in CI, covering terminal receipts and retries under the normal CI timeout. One loaded-host receipt run exceeded its local timeout; the exact case passed in an isolated rerun and the complete CI shard. - GitHub integration tests cover personal and organization setup, retry recovery, edited mentions, attachment provenance, coalesced requests, delayed acknowledgements, partial review writes, old review URLs, and company boundaries. - Browser qualification: both GitHub journeys, all five provider setup/management journeys, and the GitHub uncertain-send recovery journey passed. GitHub setup, reconnect, and task replies run with chat disabled; chat enabled alone cannot expose GitHub bots. The disposable qualification database was removed after testing. - Earlier live qualification verified App-owned issue replies, native slash-skill invocation, progress comment edits, and a 5/5 PR review with a passing current-head check in the dedicated permissions-smoke repository. These live checks did not use personal credentials as bot execution authority. ## Risks - Deploy the merged Cloud gateway protocol before the stack update. Each callback and encrypted event must retain the original instance and tenant binding. - Migration 0323 uses idempotent column additions for test installations that already applied the earlier draft migration number. - A verified connection does not prove runtime isolation or a completed review. Runtime checks remain separate. - Required merge checks must be configured in GitHub. A passing numeric score does not formally approve a PR; approval and request-changes tools remain opt-in. - Existing-App credentials cannot silently renew an uncertain manifest exchange. Recovery preserves the existing App, draft, connection, and agent. - Repository changes save immediately. Global toggles affect all currently available repositories, including unloaded rows, without granting new installation access. - A failed or uncertain tool write suppresses automatic fallback text; the governed outbox retains its evidence. Deleted or replaced response comments are not recreated through a personal credential fallback. - GitHub logo upload remains an optional human action in GitHub App settings. Runtime provisioning, delegated setup, screenshot publication, and production push delivery remain deferred. ## Model Used OpenAI Codex, based on GPT-6, with tool use and code execution. The exact runtime model identifier and context size are not exposed in this session. ## Checklist - [x] I have included a thinking path that traces from project context to this change - [x] I have specified the model used (with version and capability details) - [x] I have checked ROADMAP.md and confirmed this PR does not duplicate planned core work - [x] I have searched GitHub for duplicate or related PRs and linked them above - [x] I have either (a) linked existing issues with `Fixes: #` / `Closes #` / `Refs #` OR (b) described the issue in-PR following the relevant issue template - [x] I have not referenced internal/instance-local Paperclip issues or links (only public GitHub references) - [x] My branch name describes the change and contains no internal Paperclip ticket id or instance-derived details - [x] I have run tests locally and they pass (focused suites; complete test matrix is checked in CI) - [x] I have added or updated tests where applicable - [x] I have updated relevant documentation to reflect my changes - [x] I have considered and documented any risks above - [x] All Paperclip CI gates are green - [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups - [x] I will address all Greptile and reviewer comments before requesting merge --------- Co-authored-by: Paperclip <noreply@paperclip.ing>	2026-10-09 17:01:20 -05:00
DottaandPaperclip	57e977be72	feat: integrate Pi 1.0 into the experimental Runner (#14921) ... ## Thinking Path > - Paperclip manages AI agents and their work. > - The experimental Runner owns provider processes and durable sessions. > - Pi needs working task execution and human controls. > - The five-PR stack must preserve changes already on master. > - Each layer now carries the complete integrated source for a safe sequential fallback. > - This PR belongs to native GitHub stack #15602, ending at #14956. ## Linked Issues or Issue Description Refs #14436, #14631, #14743 and #14956. Ship Pi 1.0 through the experimental Paperclip Runner. The five PRs are #14921, #14922, #14923, #14924 and #14956. The user authorized the complete merge after checks pass. Existing `pi_local` execution is unchanged. Accounting and wider provider/platform qualification remain deferred. ## What Changed - Recover missing final replies after workspace finalization changes owners, using accepted-turn evidence without rerunning work or granting external-chat publication. - Preserve the admitted Pi instruction root across warm runs, while retaining changed-root rejection. - Give Pi a bounded 15-second default shutdown grace so stop, drain acknowledgement and durable suspension can complete. Explicit deadlines and other providers retain their existing behavior. - Integrate the Pi 1.0 runtime and master contracts. - Use Pi profile 22. Preserve explicit caller-selected models and exact native thinking levels. Keep Pi's wrapper, helper, extension and question/control behavior unchanged from the qualified profile-19 runtime. - Preserve master's Dot lifecycle and consent fields, configured task environment, status guards and current Codex/Claude dependency versions. Cursor stays qualified. Copilot stays pending; profile 17 binds the changed shared protocol validation sources. - Exclude general AWS IAM credentials from Pi static/custom provider bindings and selected task projections; preserve the provider-scoped Bedrock bearer key. Profile 21 is retained as historical provenance. Rust and cloud install probes use the current declaration. - Patch bundled brace-expansion 5.0.9 to the exact official 5.0.12 payload. Pin the patch and complete runtime closures. Include the patch in normal installed setup tooling. Keep the upstream Pi shrinkwrap as provenance and permit only this exact security correction. - Include current attestation files in the Docker build context. Keep the repository lockfile unchanged from master. CI and private image builds resolve manifest changes before their frozen installation. ## Verification - Full local `pnpm -r typecheck` passes, including Runner Rust, server and UI. Focused integration checks pass: 194 Runner admission/environment tests, 63 profile/credential tests with one expected skip, 152 Dot/UI configuration tests, and Pi transcript/notice tests. - Full local `pnpm build` passes on the final source. - Fresh final-source checks pass: all 698 Rust workspace tests (32 binaries), 156 credential/profile/controller tests with one expected skip, Runner TypeScript typecheck, and 20 package/setup/sandbox tests. - The profile-21 Pi materializer passes on the native host with the official pinned Node 24.21.0 and its npm. It verifies all 150 locked packages, the patched dependency and the exact closure. Setup/package bundle tests and UI token gates pass. - The old hashes were reproduced for all three supported targets before calculating the patched graph. New closure hashes are darwin-arm64 `282022db10150c6632b3444df421342e7d534bdf5d5fb1097a2e79d0625a2bcf`, darwin-x64 `64e251e19009f755c0b04f73ce2138246faab71a961b0f13d75ebfcc34bef12e`, and linux-x64 `713b1fdff42fb56a1518bdc084f181d70bee8ebadc3e4b1d76321ed9108c8410`. Independent native platform execution is separate from graph identity reproduction. - Historical cloud qualification remains unchanged: all seven core cases pass on shipping source `10dc43c9ec65d88c2f782d62afb296d09494f215`, harness `1a4408a48cfb5a1f094a311141c257c92cd7a893`, image `sha256:5b3a775b383591bda1b0c1889e509acc70ce7f37c53f09733c81d59037f02280`, and accepted Sonnet 4.6/low fixture. All 215 canonical files and all seven cleanup checks pass independent verification. These are profile-19 results and are not relabeled as fresh profile-22 runs. - Current Pi digest: `sha256:e92078bee3c23bec4100aa589013a44613d054cd686826534025d8019e9f39a9`. [The readiness plan](https://github.com/paperclipai/paperclip/blob/codex/pi-production-readiness/doc/plans/2026-10-02-pi-production-readiness.md) preserves campaign and failed-attempt provenance. - Merge only after every PR's current-head CI and fresh review pass. Linux CI covers the full suites, build and browser tests. The local embedded Postgres API-authority suite cannot start on this macOS/Node 26 host, so Linux CI must confirm that suite. ### Fresh profile-22 core qualification — 2026-10-08 All seven accepted core cases pass canonically on Pi profile 22, with `openrouter/anthropic/claude-sonnet-4.6` and native-confirmed low thinking. This model is a fixture; production accepts the caller's explicit Pi provider/model. Runtime/install source: `3241a992f2a7703e59e97ed0fd3e5d6405de4401`. Frozen accepted harness: `1a4408a48cfb5a1f094a311141c257c92cd7a893`. Immutable cloud image: `ghcr.io/paperclipai/paperclip-daytona-runner@sha256:506f22db7edd78f37c0c40bec1cc084af1850455026dbf467194bfbb8fcef141`. Pi digest: `sha256:e92078bee3c23bec4100aa589013a44613d054cd686826534025d8019e9f39a9`. [Hosted Linux image and clean-install verification](https://github.com/paperclipai/paperclip/actions/runs/37868328023) passes, including all 20 source-bound archives, normal CLI/Pi setup, companion import and the production pack reader. This exact installation source includes the latest master integration and the corrected Pi warm instruction-root fence. Full local typecheck/build and current-head hosted CI verify the final stack. All 13 focused real-root regressions pass. The full local executor suite passed 662 tests; 15 database tests could not start the Mac embedded PostgreSQL service. Hosted Linux CI passes the full required verification and E2E checks. These fresh results keep their own source identity; profile-19 results remain historical. | Core path | Canonical campaign | Retained archive SHA-256 | | --- | --- | --- | | File edit, validation, download and Done | `pi-core22-replyfix-0-1791511228` | 23 files; `a473e8603a3dd4737863291f8d3d1e392391f0b16d433c3e0e0e9d8baf7a97b0` | | Pending question and controller restart | `pi-core22-replyfix-1-1791511376` | 33 files; `6b829c4eb74e1f32a89c692a4ae7130dbfc1c6d3cf13915effe2103d9e242c8e` | | Three-turn session/process/workspace continuity | `pi-core22-replyfix-2-1791511587` | 23 files; `7a87021f8f9a3fdd3c58bb4467f8d82c635e3ea4795d6e75f144d9aa14818df8` | | Four typed questions and browser reconnects | `pi-core22-replyfix-3-1791511881` | 42 files; `9e31755252be1f4f9cb0626c984c142d4d1ae5f5bee3a7af08444db8d12c280a` | | Plan approval and completion | `pi-core22-replyfix-4-1791512031` | 22 files; `a0383ce1aab38e7b5a25ce0e9dd3bebea5c037ebd96ae6b29dae19015da2ae2c` | | Same-turn steering and permission denial | `pi-core22-replyfix-5-1791512261` | 39 files; `c929b8c7070f0b66aedc17e65ca46e6beab1e363926ac9f7e2a75fb250f05949` | | Stop during pending permission | `pi-core22-replyfix-6-1791512390` | 33 files; `7f0a58ae0f4d5bfc76149435f4e322537089c5bd16e7ffe9b5ad71f10a621a07` | All 215 canonical files (28714587 bytes) are independently hash-verified. All seven cleanup grades pass, with no owned runtime process or temporary root after each case. Automatic retries are zero. The owned cloud host stopped normally after retention. The prior profile-22 warm attempt remains failed and separately retained: archive SHA-256 `1e54eba5ec72b50cee1534b23d1d1d4f21a090006b8a64501ba70db972abfde5`. Its original canonical classification is preserved. Diagnosis reproduced a product bug comparing an agent-files root against an unset checkpoint-only field. The fix stores the admitted physical root separately from the adopted per-run collection capability. The real-root regression fails before the fix and passes afterward, including rejection of a changed physical root. Fixture, grader, model and all seven accepted case IDs are unchanged; this fresh campaign tests final-reply publication after file registration first. The intermediate restart attempt also remains failed and retained: archive SHA-256 `5dcaefdf1d17cf4cd54fd4cf810f45e736667392339b8ce7caf08bb4e225277f`. Its original canonical classification is preserved. Pi resumed, wrote the verified answer and completed its task; exact runner suspension was proven, but idle stop consumed about 5.2s and left under 3s for the drain acknowledgement. The Pi-only default shutdown grace is now 15s, preserving a full 5s drain round trip and a finite suspension reserve. Explicit caller deadlines, other provider defaults, literal drain receipts and exact suspension identity checks remain unchanged. The timing regression fails before this correction and passes afterward; all 18 focused settlement tests and Runner typecheck pass. The final-source file attempt is also preserved as failed (`candidate_failure`), archive SHA-256 `db6767b6773ea618997927ac77bdb005a5ac81492c7b9c0ffbc900449f829bc9`. Native edit, validation, exact downloadable artifact and Done/succeeded all passed, and the exact final reply was durably recorded. A workspace recovery owner completed before the live heartbeat reached presentation, leaving that reply absent from task chat. Recovery now materializes only a completed final reply from the accepted turn of an ordinary internal Done task, preserving issue/run/contract binding, suppression, external-chat authorization and same-run deduplication. The database regression covers the generated file-preparation receipt, suppression, unapproved external continuation and replay. Server typecheck and all 49 response-selection tests pass; hosted Linux verifies the database regression because embedded PostgreSQL cannot start on this Mac. The delayed-final-answer database regression passes on [the final root-source Linux server shard](https://github.com/paperclipai/paperclip/actions/runs/37868262553/job/113628594152), alongside 1,108 passing tests. The first root Runner shard had one unchanged durable-resume test exceed its 5-second timeout; the identical top-source shard and the isolated exact test passed. One rerun of that failed job and its required aggregate passed without source or test changes. The original failed job log and the single-rerun receipt remain retained. ### October 9 merge verification Current merge head: `5a8fe63512a7166aaef5cf50065a25008aa8b44b`. All current-head checks pass, including `ci / verify` and `ci / e2e`; exact-head Greptile review is 5/5 with no unresolved threads. Current master conflicts are resolved. The user authorized the maintainer override of the code-owner review gate after these checks. The seven retained live core cases remain bound to source `3241a992f2a7703e59e97ed0fd3e5d6405de4401` and its recorded cloud image. ## Risks - The security correction changes the dependency closure and profile identity. Old sessions must reopen on the new profile. Exact identities and credential bindings fail closed. - The runner remains experimental and requires explicit selection. Legacy Pi Local is unchanged. Caller model IDs pass through; the E2E model is a fixture. - Accounting and the broad platform/provider matrix remain deferred. This merge does not publish a release or deploy a service. ## Model Used OpenAI GPT-6 through Codex assisted with reasoning, repository inspection, editing and tool use. The exact serving ID and context window are not exposed in this session. Final live qualification uses Pi 1.0.0 with `openrouter/anthropic/claude-sonnet-4.6` and native-confirmed low thinking. ## Checklist - [x] I have included a thinking path that traces from project context to this change - [x] I have specified the model used (with version and capability details) - [x] I have checked ROADMAP.md and confirmed this PR does not duplicate planned core work - [x] I have searched GitHub for duplicate or related PRs and linked them above - [x] I have either (a) linked existing issues with `Fixes: #` / `Closes #` OR (b) described the issue in-PR following the relevant issue template - [x] I have not referenced internal/instance-local Paperclip issues or links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip` URLs) - [x] My branch name describes the change (e.g. `docs/...`, `fix/...`) and contains no internal Paperclip ticket id or instance-derived details - [x] I have run tests locally and they pass - [x] I have added or updated tests where applicable - [x] I have updated relevant documentation to reflect my changes - [x] I have considered and documented any risks above - [x] All Paperclip CI gates are green - [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups - [x] I will address all Greptile and reviewer comments before requesting merge --------- Co-authored-by: Paperclip <noreply@paperclip.ing>	2026-10-09 08:56:41 -05:00
DottaandPaperclip	6f9d0a56ba	fix: resolve installed Codex and preserve npm host dependencies (#15555) ... ## Thinking Path > - Paperclip is the open source app people use to manage AI agents for work. > - Installed agents need their own runtime dependencies. > - Native Codex startup and browser login could depend on a global CLI. > - npm bundles do not inherit workspace dependency overrides or patches. > - Codex native packages must come from npm for the consumer host. > - This PR fixes executable resolution and the required npm dependency layout. > - Usable installed CLI versions can run without a numeric version gate. ## Linked Issues or Issue Description Refs: #15422. This is a prerequisite for the later Codex-default change. **What happened?** Packaged native Codex startup and browser login could require a global Codex CLI. The server's vendored runner lacked its own declared Codex bridge. A bundled wrapper could retain producer-host binaries or select the legacy adapter's separate platform version. **Expected behavior** Prefer the installed Codex executable. Accept usable older or newer versions. Use the selected host's PATH when the dependency is absent. Keep the patched JavaScript graph. Let npm install official native packages for the consumer platform. Grant sandbox reads only to the selected vendor resources. **Steps to reproduce** 1. Prepare a clean npm installation without a global Codex command. 2. Start native Codex or its browser login. 3. Inspect the selected executable, installed host package, and sandbox resource paths. **Paperclip version or commit** Frozen master base: `1881894973a2b25838d8abed9bd8aeebc3af4441`. **Deployment mode** Source and packaged self-hosted installation. ## What Changed - Share installed Codex command resolution across native startup, direct evals, and browser login. Accept usable version differences. Preserve explicit commands, recorded sessions, remote host boundaries, and the Linux ARM64 legacy login path. Return safe errors for missing executables and failed login terminals. - Declare the server's Codex bridge. Retain the patched JavaScript dependency graph in npm packages. Strip Codex native payloads. Declare official optional host packages on the published server manifest so native and legacy versions remain separate. Preserve consumer esbuild platform dependencies. - Adjust resource lookup for npm's separate platform packages. Retain package identity, path containment, resolver ownership, and narrow sandbox reads. Keep exact version and digest checks for explicit ACPX artifact qualification. - Extend existing packaging, installed-consumer, login, selection, recovery, and integrity tests. Document the retained behavior. The diff is now 23 files, 1,709 additions, and 53 deletions. The prior diff had 35 files and about 3,700 changed lines. Removed work is preserved on `codex/runner-packaging-full-snapshot` at `6f3060beaa842ffcee21af058370d3cab5f571e9`. Removed from this PR: release workflows and assembly, provider-pack changes, Docker materialization, Git installer changes, extra login HOME/working-directory isolation, and unrelated CI fixture repairs. This PR does not change agent defaults, stored runner choices, UI, schema, or provider qualification. ## Verification - Final candidate: `dde37d7ed0121c10b60b8801eda80f8dc17909ad`. [All 47 ordinary CI jobs passed](https://github.com/paperclipai/paperclip/actions/runs/37842288835) on attempt 1, including typecheck, tests, build, E2E, runner checks, and the installed-consumer canary. [Fresh Greptile review](https://github.com/paperclipai/paperclip/pull/15555#issuecomment-6059581546) is 5/5 on this head; no unresolved threads remain. Human approval is still outstanding. - Reused focused controls passed with Node 24: 71 initial narrowed checks, then 56 affected Codex/selection/eval checks after the relative PATH correction. Runner TypeScript no-emit, syntax, and diff checks passed. The existing fixture reproduces the original relative PATH failure and verifies working-directory selection, empty entries, ordering, and absolute launch. One CLI entrypoint test was initially blocked by sandbox IPC and passed with its existing local socket allowed. Login HOME, config-directory assignments, and working directory match master. - [The actual clean Linux npm consumer](https://github.com/paperclipai/paperclip/actions/runs/37842288835/job/113535523044) passed on the final candidate's CI integration. All 17 Paperclip tarballs omit native Codex payloads. Official npm host packages retain their own integrity and `inBundle=false`. Native Codex selects 0.160.0; the legacy closure retains 0.156.1. Package admission, command leases, narrow native sandbox resources, consumer hooks, preserved lock, and offline lifecycle controls passed. Provider calls were zero. No new workflow is added. - Actual official Codex 0.156.1 passed on the final committed source on macOS ARM64: installed dependency preference, absolute and relative PATH fallback, narrow resource lookup, and app-server initialize/initialized. Executed module hashes match the candidate. One scripts-disabled install, three version probes, and one handshake completed in 26 seconds; owned files and process group were removed. No login, account/model request, or provider task ran. - CI checked out `dfda8e708e87306d22ed735d78bdfcbe770e99b7` on base `65b558180533039a891ee0cd1ccab9988aa79adc`. Its 13 upstream paths do not overlap this PR's 23 paths or alter packaging/Codex inputs. The consumer report records producer `7b8e94c08657b5ddc265946459762340f125726c`, after the existing canary staged a generated-lock-only commit (one file, three insertions). These identities are kept separate; raw generated-lock bytes were not retained. - No local Docker or Rust build, paid provider turn, merge, or deployment. Later PRs must prove live onboarding and production cloud packaging before changing defaults. ## Risks - npm must install optional host dependencies. Missing dependencies still return errors. Paperclip tarballs do not pre-bundle Codex executables. - The repository requires CI-owned lockfile updates. PR CI resolves the changed manifest and stages its own producer lockfile. A raw source Docker build with `--frozen-lockfile` must wait for the existing master lockfile bot to merge its refresh, or use a disposable resolved checkout. No Docker build or deployment is qualified by this PR. - Ordinary Codex startup accepts version differences. Actual protocol or login failures remain errors. Explicit ACPX artifact checks retain their release pins. - The published server delegates platform installation outside its bundled JavaScript graph. Focused negative controls reject unsafe package metadata and paths. The hosted consumer test passed on this candidate’s CI integration. - Existing agents retain their stored runner choices. There is no data migration or automatic upgrade. Release pipeline and platform qualification work remain separate prerequisites for later defaults. ## Model Used OpenAI Codex, GPT-6, with reasoning, tool use, code execution, and parallel agents. The exact serving snapshot and context window are not exposed in this session. ## Checklist - [x] I have included a thinking path that traces from project context to this change - [x] I have specified the model used (with version and capability details) - [x] I have checked ROADMAP.md and confirmed this PR does not duplicate planned core work - [x] I have searched GitHub for duplicate or related PRs and linked them above - [x] I have either (a) linked existing issues with `Fixes: #` / `Closes #` / `Refs #` OR (b) described the issue in-PR following the relevant issue template - [x] I have not referenced internal/instance-local Paperclip issues or links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip` URLs) - [x] My branch name describes the change (e.g. `docs/...`, `fix/...`) and contains no internal Paperclip ticket id or instance-derived details - [x] I have run tests locally and they pass - [x] I have added or updated tests where applicable - [x] I have updated relevant documentation to reflect my changes - [x] I have considered and documented any risks above - [x] All Paperclip CI gates are green - [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups - [x] I will address all Greptile and reviewer comments before requesting merge --------- Co-authored-by: Paperclip <noreply@paperclip.ing>	2026-10-09 08:19:51 -05:00
DottaandPaperclip	fc6304dfe5	feat(runner): add experimental OpenAI Dot provider over MCP Events (#15402) ... ## Thinking Path > - Paperclip manages AI agents, tasks, permissions, and execution budgets. > - Paperclip Runner gives each provider the same admitted task and tool authority. > - OpenAI Dot runs outside the local process tree and needs asynchronous work delivery. > - The merged MCP gateway supplies OAuth consent and signed event delivery. > - A personal assistant grant cannot safely stand in for an assigned agent. > - This pull request adds a separate Dot agent connection and a durable Rust Runner bridge. > - The operator can assign work to Dot and inspect its accepted work, tool receipts, and result. ## Linked Issues or Issue Description **Agent or provider** OpenAI Dot, as an experimental provider of the existing Paperclip Runner adapter. **Why this adapter is useful** An operator can assign normal Paperclip tasks to an existing Dot. Dot can read its mailbox, request work on an assigned task, use admitted task tools, and submit a result. Paperclip keeps company scope, checkout, approvals, known budget limits, and activity attribution. **How the agent is invoked** A dedicated `/mcp/runner` OAuth resource pairs one Dot grant with one agent. A signed MCP mailbox event wakes Dot. Dot explicitly accepts the assignment. The Rust Runner owns the durable turn and operation receipts. The first release supports self-hosted instances with a local Runner controller. **Additional context** This extends the merged public MCP gateway from #14846 and the assistant invitation and device-consent work from #14933. This also integrates the merged assistant tool and configuration expansion in #15380. Dot retains its dedicated agent resource and cannot receive personal configuration permission. The public assistant connection remains a personal connection. ## What Changed - Add a durable Rust Dot provider and its TypeScript Runner driver. - Add closed PRP v3 external-provider operations and native execution input v6. - Add company-scoped pairing, mailbox, assignment, and operation records. - Reuse merged browser/device consent, client metadata verification, webhook admissions, refresh, secret rotation, and warm-standby gates. - Keep Dot scopes, issuer, grants, event workers, and tool access separate from personal assistant access. - Add Dot configuration, pairing, readiness, and consent UI. Keep agent grants out of the personal Connections entry. - Regenerate the Dot-only migration after master. Preserve published gateway migrations. Make the new migration safe to reapply. - Document setup, recovery, accounting limits, evidence, and remaining account qualification. - Reverify reconnect callbacks and wake outstanding work with a fresh mailbox reference; preserve the existing assignment and operation receipts. - Clean up Dot bindings and waiting runs on OAuth revoke and refresh-token replay. Old grants cannot revoke replacement bindings. - Restore the pairing reference when an unsaved agent form is reopened; document board-only pairing routes in OpenAPI. - Accept a clean Rust exit after the acknowledged shutdown receipt. Unexpected exits still require recovery. - Clear the cached binding after a successful revoke so a failed connection refresh cannot restore it. - Add production-component Storybook states and screenshots for pairing and connection review. All preview account data is synthetic. - Persist normalized completion, serialize Dot turns and durable work admission, and poll subscription readiness. - Serialize mailbox writes and cursor reads; retain paused fence acknowledgement without task authority. - Authorize admitted review runs without changing the worker assignee. Include the fenced assignment ID in production stop notices. ## Verification - This PR integrates master `4a8178e9c`. Dot migration `0317_messy_famine.sql` follows the published history and is safe to reapply. The merge preserves the reserved migration connection, batch-commit handling, private task checks, task monitors, and native accounting. - Local workspace typecheck, full build, and UI token gates pass. The server typecheck passes after the review fixes. Database and native executor regressions pass. - All twelve real Rust/PostgreSQL Dot integration tests and twelve Dot driver tests pass. The tests cover native document writing and finalization, durable replay, queue admission, mailbox ordering, admitted reviews, stale authority, production stop references, and paused acknowledgements. - Current head `d0e7e0626` passes all 57 checks: 53 pass and four are intentionally skipped. This includes full typecheck, build, tests, Rust Runner verification, browser E2E, release verification, and Canary Dry Run. Greptile rates this exact head 5/5. All review threads are resolved. - The full local root test run is slower than the sharded CI run and has not completed. The full CI test gates pass on the current commit. Focused local regressions pass. - Real-account pairing and event delivery on this base commit remain unqualified. Live account and setup proof are recorded in the follow-up #15414. The following screenshots use synthetic preview data. They show the production pairing component and do not qualify a real account or the full agent setup journey.   ## Risks - This base adapter uses `PAPERCLIP_ENABLE_OPENAI_DOT=1` plus Public MCP and Paperclip Runner. The separate experimental-settings follow-up in #15414 replaces this environment flag with saved operator settings. - Dot does not expose provider token usage or cost. The operator must acknowledge external billing. Known Paperclip budget gates still apply. - Cancellation fences Paperclip authority. It does not confirm that Dot stopped all external activity. - Assigned skill files and third-party MCP bindings are unsupported and reject admission. There is no mounted workspace, model selector, or provider thread identifier. - Hosted agent-broker and remote controller deployments are not qualified. - The new migration follows the merged master history. Existing prototype databases still need the normal master migration history before this Dot-only migration. ## Model Used OpenAI Codex, based on GPT-6. The exact deployment ID and context window size are not exposed in this session. Capabilities used: reasoning, repository editing, code execution, and test inspection. ## Checklist - [x] I have included a thinking path that traces from project context to this change - [x] I have specified the model used (with version and capability details) - [x] I have checked ROADMAP.md and confirmed this PR does not duplicate planned core work - [x] I have searched GitHub for duplicate or related PRs and linked them above - [x] I have either (a) linked existing issues with `Fixes: #` / `Closes #` / `Refs #123` OR (b) described the issue in-PR following the relevant issue template - [x] I have not referenced internal/instance-local Paperclip issues or links (only public GitHub references) - [x] My branch name describes the change and contains no internal Paperclip ticket id or instance-derived details - [x] I have run tests locally and they pass - [x] I have added or updated tests where applicable - [x] I have updated relevant documentation to reflect my changes - [x] I have considered and documented any risks above - [x] All Paperclip CI gates are green - [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups - [x] I will address all Greptile and reviewer comments before requesting merge --------- Co-authored-by: Paperclip <noreply@paperclip.ing>	2026-10-07 19:11:50 -05:00
DottaandPaperclip	f669194298	fix(runner): propagate configured environment to future turns (#15451) ... ## Thinking Path > - Paperclip is the open source app people use to manage AI agents for work. > - Native runners start provider processes and enforce a separate tool environment policy. > - The server resolves task environment bindings at each run boundary. > - Fixed launch allowlists dropped custom variables after resolution. > - Warm process reuse and a blanket fingerprint exclusion also hid configuration changes. > - This pull request carries a bounded, server-selected list of task variable names through each process boundary. > - The benefit is that later turns and tool commands receive configured values while ambient host secrets stay excluded. ## Linked Issues or Issue Description **What happened?** A native Codex agent could not use configured task credentials. Adding the variables in Settings did not fix the next turn. The provider sanitizer, runner launch, Rust provider launch, and shell policy each used fixed allowlists. Effective config fingerprints also excluded all variables with the `PAPERCLIP_` prefix. **Expected behavior** Explicitly bound task variables must reach provider processes and tool commands. Added, changed, and removed values must take effect at the next run boundary. A running turn keeps its original configuration. **Steps to reproduce** 1. Start a native Codex task without a custom environment binding. 2. Add a fake `PAPERCLIP_PAGE_BUCKET` value and a fake Pages credential binding in Settings. 3. Continue the task and inspect the tool environment. 4. Before this fix, those values are absent even from a fresh runner launch. **Paperclip version or commit** Reproduced at `b31558064`. The fix is rebased on current master. **Deployment mode** Self-hosted server with a native process runner. Related changes: [the legacy Codex MCP environment fix](https://github.com/paperclipai/paperclip/pull/13321) and [ambient server-secret exclusion](https://github.com/paperclipai/paperclip/pull/12870). These affect different launch paths. This change preserves their credential boundaries. ## What Changed - Capture scoped task bindings after resolution, before managed provider credential injection. Mint and validate the names-only projection at native dispatch before host inheritance. Legacy adapters retain their previous environment limits. - Strip user-supplied projection markers from agent, environment, project, and routine config. - Carry selected values through the Codex, ACPX, OpenCode, runnerd, and Rust subprocess launch boundaries. - Add selected names to native and ACPX Codex shell include lists. Keep selected values out of command arguments, including selected bootstrap values. - Reject malformed projections, reserved authority and loader names, missing values, null bytes, and oversized input. - Replace a retained native process when projected values change. Keep unchanged processes reusable. - Fingerprint custom namespaced variables while excluding known generated runtime variables. - Document next-run behavior and add regression coverage. ## Verification - Red: the permanent reproduction failed at four launch/tool boundaries and the namespaced fingerprint check. Two control checks passed. - Green: the initial regression plus existing Codex environment and shell tests passed (39 tests). - Server config resolution, fingerprints, and native-session suites passed (653 tests), including addition, rotation, removal, and unchanged warm-session reuse. - Rust regression tests passed. A real shell child received added and rotated values, then lost them after removal. Unselected host variables stayed absent. - `pnpm -r typecheck` and `pnpm build` passed after rebase. The full `pnpm test:run` was attempted but could not complete: fresh embedded PostgreSQL databases fail during bootstrap on this macOS host. An isolated suite and a disposable native `initdb` probe reproduced the failure before test execution. `shmget` reports `No space left on device` because the host has exhausted shared-memory IDs. This is not disk exhaustion. The run was stopped after confirming the external setup failure. CI results will be recorded separately. - Runner boundary suites: 361 tests passed. Two process-launch errors during concurrent binary staging passed on isolated rerun. - Rust Codex provider and process supervisor integration suites: 97 passed, 2 intentionally ignored. - ACPX shell and selected-bootstrap argv regressions: 3 failed before the fix, then all 55 relevant tests passed. - Review compatibility regression: 129-variable and large-value legacy configurations failed before the correction and passed after moving native-only validation to dispatch. - Final review head `3f11e8d25`: repository typechecks and production build passed. CI completed its implementation checks; one general-server shard hit SQL `40P01` in `heartbeat-runtime-skills.test.ts` during its `beforeEach` table truncate (1,199 tests passed in that shard). The shard passed on its single rerun. All CI checks for this head are green. Greptile reviewed this head at 5/5 with no new actionable findings; the compatibility thread is resolved. - No live provider credentials or model calls are required by these tests. ## Risks - Configured task credentials now reach the tools they were configured for. The controller selects names only after existing scope and secret-binding authorization. - TypeScript and Rust validate the same bounded projection. Their reserved-name rules must stay aligned. - A changed projection replaces an idle provider process. Unchanged values preserve reuse. Active turns retain their original environment. - No database migration or API schema change. > This fixes existing runner configuration behavior. It does not add a new roadmap capability. ## Model Used - OpenAI GPT-6 (Codex), with reasoning, local code execution, and repository tools. The session does not expose a more specific API model identifier or context window size. ## Checklist - [x] I have included a thinking path that traces from project context to this change - [x] I have specified the model used (with version and capability details) - [x] I have checked ROADMAP.md and confirmed this PR does not duplicate planned core work - [x] I have searched GitHub for duplicate or related PRs and linked them above - [x] I have either (a) linked existing issues with `Fixes: #` / `Closes #` / `Refs #` OR (b) described the issue in-PR following the relevant issue template - [x] I have not referenced internal/instance-local Paperclip issues or links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip` URLs) - [x] My branch name describes the change (e.g. `docs/...`, `fix/...`) and contains no internal Paperclip ticket id or instance-derived details - [x] I have run tests locally and they pass - [x] I have added or updated tests where applicable - [x] I have updated relevant documentation to reflect my changes - [x] I have considered and documented any risks above - [x] All Paperclip CI gates are green - [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups - [x] I will address all Greptile and reviewer comments before requesting merge --------- Co-authored-by: Paperclip <noreply@paperclip.ing>	2026-10-07 10:16:49 -05:00
DottaandPaperclip	a6306ba606	feat(runner): consolidate Cursor production integration (#15075) ... ## Thinking Path > - Paperclip is the open source app people use to manage AI agents for work. > - The native Runner keeps provider sessions under company authority, approvals, budgets and durable recovery. > - Cursor work was spread across candidate branches. The published branch lacked later plan, permission and cleanup fixes. > - Production also needs public installation and matching runtime assets for local and Daytona execution. > - This pull request consolidates Cursor onto current mainline recovery behavior and completes that installation path. > - The installed v11 release passed focused local and Daytona qualification after the generic mode and lifecycle cleanup. The later model-selection correction and current mainline merge produce v14 artifacts that need matching release qualification. > - Cursor admission is enabled in source; publish only an artifact combination with matching qualification. Native AskQuestion and complete per-run dollar accounting remain excluded. ## Linked Issues or Issue Description Refs: #14435, #14631, #14669, #14699, #14724. This completes the Cursor implementation by @cryppadotta from combined source `22c78242a4e0c2369fecf0c2dc4e7600fbad6706`. It preserves newer mainline recovery, completion and warm-directory behavior. Pi and Copilot remain gated. ## What Changed - Generate named Rust and TypeScript ACPX release profiles from one manifest. Share runtime pins with packaging and server verification. Preserve vendor runtime versions; bind the updated ACPX patch to Cursor profile v14 and reject stale generated declarations at build/typecheck. - Remove ACPX model allowlists, including the former Codex and Pi restrictions and the duplicate developer test-drive gate. Send any explicit model ID unchanged to its provider and verify the effective selection before prompting. The bundled ACPX package forwards unlisted IDs, rejects mismatched acknowledgements, and restores the exact selection after session load. It does not expand Cursor model aliases. Provider rejection, mismatch, or missing model controls fails without a fallback. Model examples live in evaluation fixtures, outside runtime declarations. - Add pinned Cursor execution, contained instructions, exact model verification and Agent/Plan/Ask modes. - Carry an opaque generic `mode` identifier in shared native execution, sidecar, Rust and recovery contracts. The provider adapter owns supported modes, defaults, native translation and acknowledgement. - Keep native RPC recognition, accepted-plan interpretation and permission evidence behind provider adapters. Shared settlement and recovery verify normalized facts and their committed evidence. - Replace the Cursor-only warm-attachment branch with a runner-owned capability. Only Cursor opts into it. Move profile compatibility and optional usage parsing into provider metadata and adapters. - Write generic plan-wait receipts. Read exact historical Cursor receipts through a separate compatibility decoder. Reject mixed formats and preserve existing authority checks. - Carry native plans, semantic questions, todos, child activity, permission identities and partial usage diagnostics through the Runner. - Preserve durable response delivery, cancellation, warm ownership and process retirement. - Finish accepted planning runs successfully. Keep their tasks open for explicit direction. Acceptance does not start implementation. - Ship `paperclipai runtime setup cursor` and its provisioner through the public package. npm installation does not download Cursor. Setup uses the OS account's closure-keyed cache so system-wide npm packages can remain read-only. Run it as the Paperclip service account. - Include Cursor in normal provider packs and Daytona images for macOS ARM64/x64 and Linux x64. - Reject stale release packs by source revision and current ACPX/Cursor pins before assembly writes files. Verify current Cursor version/profile/closure again at runtime. - Ship all three daemon targets and the expected Linux image-pack identity. A macOS controller uses its packaged Linux daemon for Daytona. Image mismatches fail before provider launch. - Use the vendored Runner boundary for installed readiness probes. Verify the actual installed Cursor probe. - Verify compiled public Daytona plugins and their release versions in installed smokes. - Record exact artifacts, the acceptance matrix, retained failures, supported capabilities and rollback behavior in the [readiness report](https://github.com/paperclipai/paperclip/blob/codex/cursor-production-readiness/doc/plans/2026-10-03-cursor-production-readiness.md). ## Verification - Current head `f7ec5cc1f0e30c62a829c016ff2013a2a9d79037` merges mainline `faa8e452c73bae5e044dd6379179a00106abb131`. It keeps Cursor plan and cancellation guards alongside mainline historical-question filtering. The evaluation catalog includes both Cursor and expanded adapter accounting cases (683 total). Recursive typecheck, full build, 696 lifecycle/recovery tests, 45 fixture tests and fixture typecheck passed. Current-head CI passed: 56 successful checks, one neutral and four skipped. [Complete CI](https://github.com/paperclipai/paperclip/actions/runs/37557996535). The fresh Base Greptile review is 5/5 on this exact head, with 304 files reviewed, zero new comments and zero unresolved threads. The user authorized overriding the CODEOWNER review gate after checks passed; no failing checks are overridden. Prior results below retain their own head identities. - Corrective head `3d2b168366258036f6b6a6fccb382c49138cc601` fixes the post-merge Apex finding. Automatic-review and new-evidence reconciliation preserve pending child results and recheck delivery under the status lock before completing. Account repair now excludes unrelated secret consumers and requires the failed agent's identity. Regression coverage includes the commit race, delivery statuses, current-run/current-intent exclusions, repeated reconciliation, both database reconciliation paths, and credential consumer boundaries. All 184 affected tests, server typecheck and server build passed. Current-head Base Greptile review is 5/5, with 304 files reviewed, zero new comments and zero unresolved threads. Current-head CI passed: 56 successful checks, one neutral and four skipped. [Complete CI](https://github.com/paperclipai/paperclip/actions/runs/37535994724). This Base review is distinct from the earlier Apex review. - Merge head `5957c257a` reconciles mainline `b508a05c4`. It preserves both accepted-plan waits and pending-child-completion checks, current provider selectors, task-creation response identities, and mainline ACPX missing-file handling. The combined patch is bound to Cursor profile v14; historical records keep their original identities. - Merge head `5957c257a` passed recursive typecheck, full build, 43 installed ACPX/package contracts, 107 provider UI and plan/recovery tests, 593 database-backed lifecycle tests, 49 profile/native contract tests, 45 Product E2E fixture tests, fixture typecheck, token gates, three provider-free browser task-creation cases, and Runner conformance/replay checks. Its complete CI passed (55 successful checks, one neutral and four skipped), while Apex returned 2/5 with a child-delivery finding addressed below. - The local full-suite attempt again failed the unchanged Git streaming test (360-second timeout) and was stopped. The concurrent local Rust attempt failed four unchanged Codex process/deadline tests; all four passed serially without code changes in 7.29 seconds after removing the competing test load. These failed commands are retained and are not reported as full-suite passes; the fresh Linux CI runs are tracked separately. - The previous head `907bdb2a2778c7ffeb4a662a91460c9d1ddfc9c5` earned Apex 5/5 with zero comments after fixing all three findings: per-user install cache, stale release-pack rejection, and public Linux smoke account/home handling. Its real built installer passed from read-only public packages on macOS ARM64 and Linux x64. All 137 release-registry checks and 64 ACPX package contracts passed. That review does not cover this mainline reconciliation. - Prior `beadd3654` passed the full CI matrix; its one unchanged chat test failure and successful single retry remain in the [CI history](https://github.com/paperclipai/paperclip/actions/runs/37521449327). Historical results below remain attributed to their original builds. - Fixture follow-up `dd59d7e82b103a88b7cbd7d2c38b612c0fbbff7a` removes provider-specific model choices from generic offline ACPX tests. The fake sidecar preserves the model and session identity selected at open through suspension. Affected verification passed: 106 Rust tests and 73 TypeScript tests. This commit changes test code only; the production-code checks below retain their recorded identities. Its CI and Greptile review later passed; those results belong to that historical head. - Model-selection cleanup `9a070808b48960a41fdfd369ae0636b95af82459`: 252 focused Runner tests passed (six platform skips), covering all six ACPX agents, native model acknowledgement, rejected selections, installation integrity and recovery identity. The merged branch passed recursive typecheck, full build, token gates, server admission (19 tests), and the Product E2E catalog (45 tests). The acceptance catalog passed all four tests. The full Rust suite passed: 643 tests, 2 ignored. It verifies sidecar acknowledgement of unlisted models and rejection of model mismatches. The final commits only update Rust tests; production sources match the verified build at `65ec3279ac50185e3cda109b5cfd9b4f56105de0`. No new paid provider calls were made. - The merge preserves both Cursor and the new mainline public-MCP fixture cases. Auto-merge remains disabled; the latest follow-up status is recorded above. The local `pnpm test:run` attempt hit the unchanged Git streaming test's 300-second timeout and was interrupted before merging mainline. The broad Runner attempt found obsolete single-model assertions plus three macOS fixture-path failures caused by a `/private/tmp` override. The assertions are corrected; affected TypeScript checks passed with the standard macOS temporary directory, and the complete Rust suite passed. Neither interrupted command is a full-suite pass. - Earlier declaration-cleanup head `6f4a5e9e2` passed recursive typecheck, build, Rust and focused tests. Its CI later exposed a test expecting duplicated Grok digest literals. The current source fixes that assertion to compare launcher bytes with the shared manifest. Historical successes and failed attempts are retained; no new live provider qualification is claimed. - Previous head `e75fde6098b0ddd8cec765bfb6ecaeecb88a26a6` passed complete CI (56 successful checks, one neutral, four skipped) and Greptile 5/5. [Historical complete CI](https://github.com/paperclipai/paperclip/actions/runs/37489112305). Those results are not claimed for the cleanup head. - Frozen live application: `d7b696f9b8f79095233e9e3d56d23e6a6018dd48`. Public package version: `0.0.0-cursor-verify.3d0c9b7761c6`. The declaration cleanup preserves release pins and does not relabel that tested artifact as a build of the new source. Mainline through `e34abee670` was reconciled while preserving accepted-plan waits, provider-capacity handling, and both Cursor and public-MCP fixtures. - Clean normal installation, explicit Cursor setup and daemon resolution passed on macOS ARM64, macOS x64 under Rosetta, and Linux x64. npm lifecycle hooks ran without silently downloading Cursor. - Historical v11 live matrix: **18/18 passed with cleanup** (nine local, nine Daytona) after the generic mode and lifecycle cleanup. The campaign has 23 attempts; all five failures and their diagnoses remain recorded. Exact case identities, hashes and limits are in the readiness report. All provider calls are real, use the explicit Luna model and company-bound credentials, and run without qualification or runtime-asset overrides. - The immutable Daytona image is `ghcr.io/paperclipai/paperclip-daytona-runner@sha256:d6259b6bba094702c13fc2283bd85550849c1c53145b656fb2746778f9fa1747`. The public Daytona plugin is installed independently and its version is checked. - Recursive typecheck, full build, token gates and Runner contract/conformance/replay checks passed on the frozen application. Its complete Linux CI suite passed. The duplicate local full-suite command was incomplete after timing failures; affected repeats passed, but that command is not reported as a clean pass. - Qualification fixtures passed typecheck, 1,675 Vitest tests (one skip), 128 Node checks, three provider-free browser tests, and 150 focused lifecycle tests after the final diagnostic correction. The affected legacy Cursor command file also passed all five tests after removing its shorter 10-second override; it now inherits the suite’s standard 15-second timeout. Greptile is 5/5 on `e75fde609` with no unresolved review threads. CI results above are recorded separately from historical build results. ## Risks - Cursor v14 includes the updated ACPX dependency patch and release identity. The v11 live matrix and image below remain historical evidence. They do not certify new v14 package/image artifacts. - ACPX accepts models beyond the qualification fixtures. Availability and entitlement depend on the provider. Successful configuration is not a claim of live qualification for every model. - Shared mode is an opaque identifier. Provider adapters own its meaning. Incompatible historical sessions remain fenced; exact committed plan waits and task history remain inspectable. - Native AskQuestion is excluded. Paperclip semantic questions are supported. Authoritative per-run dollar accounting is unavailable; partial counters remain diagnostics and unknown cost is not zero. - Image input, detailed native diffs, deeper child transcripts and native plan-file export remain follow-ups. - macOS x64 has clean-install and daemon-startup proof under Rosetta, not a separate live campaign on Intel hardware. - Release only the tested package/image combination. Merging this PR does not publish npm packages or deploy that image. Later builds need their own release verification. Rollback disables new Cursor admission while preserving records and recovery inspection. - A model can fail an exact instruction: one cancelled-plan attempt returned the wrong summary marker despite correct cancellation. The unchanged repeat passed; both results remain in the report. > ROADMAP.md was checked. This completes existing native Runner/Cursor work; it does not add an independent core feature proposal. ## Model Used OpenAI Codex, GPT-6. The exact serving variant and context window are not exposed in this session. The agent used reasoning, repository inspection, code execution, protocol tests and browser-backed Product E2E tools. Cursor acceptance uses the explicit `gpt-5.6-luna[context=272k,reasoning=medium,fast=false]` model. That is the evaluated provider model. ## Checklist - [x] I have included a thinking path that traces from project context to this change - [x] I have specified the model used (with version and capability details) - [x] I have checked ROADMAP.md and confirmed this PR does not duplicate planned core work - [x] I have searched GitHub for duplicate or related PRs and linked them above - [x] I have either (a) linked existing issues with `Fixes: #` / `Closes #` / `Refs #` OR (b) described the issue in-PR following the relevant issue template - [x] I have not referenced internal/instance-local Paperclip issues or links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip` URLs) - [x] My branch name describes the change (e.g. `docs/...`, `fix/...`) and contains no internal Paperclip ticket id or instance-derived details - [x] I have run tests locally and they pass — affected suites passed; full CI and the retained local failed attempts are recorded separately above. - [x] I have added or updated tests where applicable - [x] I have updated relevant documentation to reflect my changes - [x] I have considered and documented any risks above - [x] All Paperclip CI gates are green — 56 successful checks, one neutral and four skipped on `f7ec5cc1f0e30c62a829c016ff2013a2a9d79037` - [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups — fresh Base review passed on `f7ec5cc1f0e30c62a829c016ff2013a2a9d79037`; zero new comments and no unresolved threads. The earlier Apex finding remains fixed. - [x] I will address all Greptile and reviewer comments before requesting merge --------- Co-authored-by: Paperclip <noreply@paperclip.ing>	2026-10-06 20:48:15 -05:00
DottaandPaperclip	63f3aa2dbf	fix(runner): continue restart-interrupted Codex turns (#15297) ... ## Thinking Path > - Paperclip is the open source app people use to manage AI agents for work. > - Native runs retain their provider conversation across server restarts. > - A dead runner can restore a Codex conversation after its active turn is lost. > - The old recovery path synthesized a failed task result from that interruption. > - The task then required operator action even though its conversation and workspace were available. > - This pull request preserves the interruption cause and uses the admitted restart attempt for one continuation in the same conversation. > - The agent can reconcile unfinished actions and complete the current request without resending the original task. ## Linked Issues or Issue Description Related: #12845 added native restart recovery. #15042 covers admission during shutdown. #14796 covers legacy shutdown recovery. This change covers a lost native Codex turn after successful conversation restoration. **What happened?** After a server restart killed the local runner, Paperclip restored the saved Codex thread. Runnerd found that the old turn was no longer active. It synthesized a failed terminal and a needs-review result from the last progress message. The transport also discarded the terminal error when it reconstructed thread history. The task failed instead of continuing. **Expected behavior** After proving that the old process stopped and admitting a bounded recovery attempt, resume the current request in the same conversation. Preserve the workspace. Inspect unfinished actions before proceeding. Keep real provider failures, accepted results, intentional stops, unknown unreconciled effects, and exhausted attempts subject to their existing rules. **Steps to reproduce** 1. Start a local native Codex run and leave its turn active. 2. Kill the isolated runner and provider processes, as can happen during a server restart. 3. Restore the same provider thread with no active turn. 4. Observe the synthetic task failure. The new real-process regression reproduces this boundary with a scripted provider. ## What Changed - Record an explicit recoverable process-loss cause without inventing a task result. - Preserve terminal errors and prior turns in reconstructed provider history. Recover the authoritative saved result when adopting an accepted continuation. - Send one continuation in the same conversation for an admitted dead-runner recovery. Require reconciliation of unfinished commands and external actions. - Persist the interrupted terminal before submission and retain the existing recovery marker across another controller loss. - Keep provider attempt limits, terminal failures, and intentional cancellation behavior. - Add red/green regressions, real process-kill coverage, restart checkpoint coverage, and retry-budget coverage. Document the behavior and run-log evidence. ## Verification - Red: the new native runtime regression rejected with `NativeProviderTerminalFailure` on the original code; the Rust restore regression found a missing recovery cause. - Red/green: if restoring the conversation fails and replacement is allowed, the replacement receives the full task and fresh-session handoff. Both prepared and legacy execution inputs are covered. - Red: a second controller crash after the provider accepted the continuation caused an extra `turn/start`. The regression now proves there are exactly two submissions total: the original and its continuation. - Green: focused runtime, backend, driver recovery, and real-process restart suites (207 tests). After the final history/result changes, driver recovery and real-process restart suites passed again (36 tests). - Green: complete Codex transport suite (186 tests), server restart classification/database integration suites (34 tests), and Rust Codex provider suite (92 passed, 2 ignored). - Full `pnpm -r typecheck` and `pnpm build` passed on `60141e649`. The subsequent replacement-prompt guard passed the Runner TypeScript check and the complete runtime plus process-restart suites (148 tests). - Local full-suite attempt: `pnpm test:run` reported two failures in the untouched chat integration suite. Both passed individually, and the complete chat suite passed on rerun (1,063 tests). After all remote test shards passed, the duplicate serial local run was stopped with SIGINT; it is not claimed as a full local-suite pass. - Latest-head CI (`b1297dcd4`): 55 successful checks and 4 intentionally skipped checks, including all test shards, typecheck, build, native Runner verification, end-to-end tests, and canary dry run. [CI run](https://github.com/paperclipai/paperclip/actions/runs/37405346303). - Greptile: 5/5 on the latest head, with no unresolved review threads. The PR is mergeable. - The process tests use the real runner binary and a scripted Codex provider. They do not call a live model service. ## Risks - This changes local Codex recovery after process loss. A continuation can execute more work in the retained conversation. Its prompt requires state inspection before repeating an uncertain action; the system does not replay tool calls. - Recovery shares the existing three-attempt budget and one-shot continuation marker. Real failures and older unmarked failed checkpoints are not reopened. - No database migration or API change is required. ## Model Used - OpenAI Codex, based on GPT-6. The exact model ID and context-window size are not exposed in this session. - Capabilities: reasoning, source inspection, tool use, code editing, code execution, and test analysis. ## Checklist - [x] I have included a thinking path that traces from project context to this change - [x] I have specified the model used (with version and capability details) - [x] I have checked ROADMAP.md and confirmed this PR does not duplicate planned core work - [x] I have searched GitHub for duplicate or related PRs and linked them above - [x] I have either (a) linked existing issues with `Fixes: #` / `Closes #` / `Refs #` OR (b) described the issue in-PR following the relevant issue template - [x] I have not referenced internal/instance-local Paperclip issues or links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip` URLs) - [x] My branch name describes the change (e.g. `docs/...`, `fix/...`) and contains no internal Paperclip ticket id or instance-derived details - [x] I have run tests locally and they pass - [x] I have added or updated tests where applicable - [x] I have updated relevant documentation to reflect my changes - [x] I have considered and documented any risks above - [x] All Paperclip CI gates are green - [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups - [x] I will address all Greptile and reviewer comments before requesting merge --------- Co-authored-by: Paperclip <noreply@paperclip.ing>	2026-10-06 07:49:47 -05:00
DottaandPaperclip	2ec82c5774	fix(runner): preserve task context when tool connections change (#14963) ... ## Thinking Path > - Paperclip is the open source app people use to manage AI agents for work. > - Agents use tools through company-scoped connections and provider sessions. > - Resolving a tool connection currently forces a fresh session even when the provider can load new tools into the existing conversation. > - A fresh provider conversation can receive too little history to continue the task. > - This pull request adds explicit tool-refresh capabilities and uses them in both runner paths. > - Fresh attempts receive bounded task history with source IDs and retrieval instructions. > - The benefit is that agents can continue the same task after a connection changes. ## Linked Issues or Issue Description **What happened?** A resolved tool connection forced a fresh provider conversation. The new conversation could lose the original goal and prior answers. Claude also rejected resume when only the MCP server set changed. **Expected behavior** Resume the provider conversation when its harness can refresh tools. When a fresh session is required, supply enough bounded history to continue the task. Preserve company, agent, task, workspace, model, instruction, and skill checks. **Steps to reproduce** 1. Start a conversation and agree on a task and its constraints. 2. Request and connect a tool needed for the task. 3. Continue the conversation after the connection resolves. 4. Check that the agent remembers the task and can use the new tool. **Paperclip version or commit** The bug was reproduced on master at `c46e41e81`. This branch is rebased on current master. **Deployment mode** Self-hosted server. Both legacy adapters and the native runner are affected. Related public work: Refs #13282 for task-backed conversations. Refs #13057 for the broader session-compaction proposal. Refs #14659 for another report about local CLI session continuity. This change fixes tool-connection continuation. Provider authentication repairs keep their existing recovery behavior. ## What Changed - Expose tool-refresh support in native harness descriptors and legacy adapter metadata. - Request tool refresh after connection resolution. Keep provider authentication repair as a fresh-session wake. - Reload current tools and credentials while retaining supported Claude, Codex, Grok, and other provider conversations. - Allow MCP-only changes during qualified native recovery. Keep all other compatibility checks. - Refresh managed-provider and ACPX tool bindings when attaching a new run. - Add a fresh-session handoff for both runner paths. Bound database reads, excerpts, and the final packet to 24,000 bytes. - Include the original request, recent messages, decisions, plans, prior answers, and source IDs. Mark omitted content. Apply reset boundaries, wake cutoffs, quarantine, and secret redaction. - Add regression tests and document the capabilities and handoff behavior. ## Verification - `pnpm -r typecheck` and `pnpm build` passed. Rust formatting passed. - Final review fixes passed 314 server tests, 333 adapter utility tests, 139 native-session runtime tests, and 12 managed-provider Rust tests. They verify historical quarantine, raised budgets across attachment, no history reads on successful resume, and handoff delivery on fresh retry. - Broader branch verification also passed 1,401 adapter utility tests, 1,047 runner TypeScript tests, 43 Grok adapter tests, and 311 Rust core tests. - Live Claude CLI and Grok ACP probes preserved the provider session ID, recalled a prior task constraint, and called a newly added read-only MCP tool. - GitHub CI passed on `b21486d18084a7aa4cafbe8e012f7cad6585d9cc`: 55 successful checks and 4 skipped checks. This includes all test shards, all eight browser shards, runner checks, and the Grok clean public npm install canary. [CI run](https://github.com/paperclipai/paperclip/actions/runs/37057514976). - A full local test attempt encountered a separate Git snapshot timeout. All affected local suites passed after the final edits, and the full CI test gates passed. - Review the capability matrix in `packages/paperclip-runner/README.md`. Repeat the four reproduction steps with a supported provider and with an unsupported harness. ## Risks - Provider tool refresh can fail. Existing recovery falls back to a fresh conversation where policy permits it. - A new transport can replace an old process while preserving the provider conversation. Tests cover current credentials and unchanged identity. - Long history can omit older context. Explicit markers and source IDs let the agent retrieve needed context within task scope. - Unknown and unqualified harnesses use the fresh-session path. No database migration is required. ## Model Used OpenAI Codex, GPT-6, with reasoning, tool use, code execution, and live provider testing. The exact model ID and context-window size are not exposed in this session. Claude and Grok also ran as test subjects. ## Checklist - [x] I have included a thinking path that traces from project context to this change - [x] I have specified the model used (with version and capability details) - [x] I have checked ROADMAP.md and confirmed this PR does not duplicate planned core work - [x] I have searched GitHub for duplicate or related PRs and linked them above - [x] I have either (a) linked existing issues with `Fixes: #` / `Closes #` / `Refs #` OR (b) described the issue in-PR following the relevant issue template - [x] I have not referenced internal/instance-local Paperclip issues or links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip` URLs) - [x] My branch name describes the change (e.g. `docs/...`, `fix/...`) and contains no internal Paperclip ticket id or instance-derived details - [x] I have run tests locally and they pass - [x] I have added or updated tests where applicable - [x] I have updated relevant documentation to reflect my changes - [x] I have considered and documented any risks above - [x] All Paperclip CI gates are green - [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups - [x] I will address all Greptile and reviewer comments before requesting merge --------- Co-authored-by: Paperclip <noreply@paperclip.ing>	2026-10-02 15:11:44 -05:00
DottaandPaperclip	94e8dec56b	fix(runner): preserve tool outcomes through shutdown and restart (#14734) ... ## Thinking Path > - Paperclip is the open source app people use to manage AI agents for work. > - The runner sends authorized tool calls to the server and saves their results. > - A provider turn can stop while a server write is still running. > - The old shutdown path invented a failed result that could conflict with the real result. > - Truncated execution input and incomplete recovery records made the failure harder to diagnose. > - This pull request preserves exact inputs and actual outcomes through shutdown and restart. > - Tests force the race and crash boundaries so safe retries do not repeat writes. ## Linked Issues or Issue Description **What happened?** Stopping a turn during a server tool call could record a false failure, then reject the actual result as a conflict. The diagnostic input formatter could truncate instruction content before execution. A crash during saved-result delivery could leave that delivery permanently indeterminate. Cleanup could hide the first failure, and a retry could overwrite earlier run logs. **Expected behavior** Keep dispatched tools pending until their actual result is known. Preserve accepted input bytes. Accept identical result delivery without failing the task. Reject conflicting results with enough evidence to diagnose them. Recover saved-result delivery without repeating the business operation. **Steps to reproduce** 1. Hold an instruction update at the filesystem commit barrier. 2. Stop its provider turn before the server returns the result. 3. Release the write, deliver its result, and replay the same result. 4. Repeat with a restart before and after the delivery receipt is saved. 5. Check that there is one write and one audit row, and that the exact result survives. **Paperclip version or commit** The change was developed from `44736c9c7` and rebased onto `0e5830887`. **Deployment mode** Self-hosted server with the native runner. Tests use local runner processes, scripted providers, and PostgreSQL. Related work: #12353 added durable semantic tool receipts; #12384 added durable Codex tool recovery; #12404 bound semantic tools to ACPX sessions. #14633 covers separate native-provider cancellation and qualification work. This PR addresses server semantic-tool outcomes and their durable delivery. No duplicate fix was found. AgentMail discovery is outside this PR. ## What Changed - Close turn admission without inventing results for dispatched tools. Keep pending calls and accept late actual results. - Accept identical result replay with a diagnostic warning. Include call identity and both result hashes in real conflict errors. - Preserve exact execution arguments. Reject prohibited or oversized input before dispatch. Keep diagnostic previews redacted and bounded. - Commit instruction-attempt evidence before the filesystem write. Save completed mutation receipts so concurrent and restarted duplicates return the first result. Recheck authorization before replay. An attempt without a completed result stays unknown and cannot execute again. Definite pre-write failures save and replay their original error without another write. - Recover an interrupted saved-result delivery only for backends with durable result receipts. Never replay an ordinary business operation with an unknown outcome. - Preserve the initiating error when cleanup also fails. Record incomplete settlement evidence. Propagate typed unknown-outcome errors through the native tool wrapper without creating a false completed tool result. - Append run-log attempts and restore the durable log before appending after local file loss. Reject incomplete restores. Publish a restored prefix only if the destination is absent so concurrent attempts cannot overwrite new lines. - Add deterministic race, crash, replay, authorization, exact-content, and log-restoration tests. Document their assertions in `packages/paperclip-runner/docs/durable-recovery.md`. ## Verification - Current head: `7e088f4c7fba8ebabf98ae95485a5753b013d489`. All 55 applicable checks pass; four conditional/manual checks are skipped. This includes build, typecheck, Rust, both runner TypeScript shards, server and workspace tests, all eight browser shards, isolated runner compilation, and the clean-install release dry run. [CI run](https://github.com/paperclipai/paperclip/actions/runs/36746101110). - Greptile reviewed this exact head at 5/5 with zero new findings. All three earlier review threads are resolved. - Focused local verification includes 11 instruction integration tests, 23 surrounding authority/tool tests, 26 run-log tests, and 169 controller/driver tests. The post-rebase controller/transport/runtime selection passed 415 tests. The full Rust release suite passed 617 tests with two ignored. The real-process SIGKILL recovery test passed three consecutive runs. - The fault matrix in `packages/paperclip-runner/docs/durable-recovery.md` uses explicit barriers, real PostgreSQL rollback, durable journal reloads, and killed runner processes. It covers late results, identical and conflicting replay, exact long content, concurrent log restoration, lost commit acknowledgements, and definite failure replay after the original CAS base becomes valid again. No paid model calls are needed. - Full local recursive typecheck and build passed during implementation. Server typecheck and the runner TypeScript build passed after the review fixes. The broad local repository test run was stopped after repeated database startup timeouts. Four timing/launch failures in an earlier broad runner run passed focused reruns without changed assertions or timeouts. These are local verification limitations; the complete current-head CI suite is green. An earlier CI workspace job received an infrastructure shutdown signal; its current-head replacement passed. ## Risks - A stopped turn can remain blocked when a dispatched operation has no proven result. The system does not guess its outcome or rerun its effect. - Conflicting results still fail settlement. Existing failed or conflicting journals are not repaired automatically. - Accepted semantic input is limited to 480 KiB of encoded JSON to fit the encrypted transport. Larger input fails before execution. - Instruction filesystem writes and database receipts are not one atomic storage operation. A separately committed attempt and audit record survive rollback. An attempt without a completed success or definite pre-write failure receipt remains blocked as an unknown outcome. It is not replayed or reported as success. - Run-log restoration now reads the durable object before appending when the local log is missing. Failed or incomplete reads reject the append. - No schema migration, dependency change, workflow change, or AgentMail change is included. ## Model Used OpenAI Codex, GPT-6, with reasoning, tool use, code execution, and test analysis. The exact served model ID and context-window size are not exposed in this session. ## Checklist - [x] I have included a thinking path that traces from project context to this change - [x] I have specified the model used (with version and capability details) - [x] I have checked ROADMAP.md and confirmed this PR does not duplicate planned core work - [x] I have searched GitHub for duplicate or related PRs and linked them above - [x] I have either (a) linked existing issues with `Fixes: #` / `Closes #` / `Refs #` OR (b) described the issue in-PR following the relevant issue template - [x] I have not referenced internal/instance-local Paperclip issues or links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip` URLs) - [x] My branch name describes the change (e.g. `docs/...`, `fix/...`) and contains no internal Paperclip ticket id or instance-derived details - [x] I have run tests locally and they pass (focused suites; the broad local run limitation is recorded above) - [x] I have added or updated tests where applicable - [x] I have updated relevant documentation to reflect my changes - [x] I have considered and documented any risks above - [x] All Paperclip CI gates are green - [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups - [x] I will address all Greptile and reviewer comments before requesting merge --------- Co-authored-by: Paperclip <noreply@paperclip.ing>	2026-09-30 11:54:56 -05:00
DottaandPaperclip	992f720262	fix: make runner task context ownership explicit (#13753) ... <!-- Write all pull request text in Simplified Technical English (ASD-STE100). --> ## Thinking Path > - Paperclip is the open source app people use to manage AI agents for work. > - Task descriptions, comments, continuation data, skills, and execution rules enter several agent adapters. > - The same source can be rendered by more than one automatic input carrier. > - Failed resumes can also rebuild input from stale or compact context. > - This pull request gives each Paperclip-owned source one delivery owner and preserves the required transport boundaries. > - It adds deterministic adapter, interaction, runner, and browser tests for these boundaries. > - The benefit is more predictable context delivery with explicit evidence for later live qualification. ## Linked Issues or Issue Description Related: #13144 removes a duplicate environment payload and bounds wake lists. Related: #11360 addresses Hermes resume behavior. This pull request preserves compatible active-session formats while repairing context ownership and stale question creation. **What happened?** Task descriptions and comments could enter more than one automatic context block. Native transports could wrap a complete model input in a second task envelope. Some legacy and gateway adapters could omit the owned assignment on ordinary tasks or rebuild a failed resume with stale compact context. A continuation could also request a question after newer human comments had arrived. **Expected behavior** Each task or comment source has one automatic model-facing owner. Distinct comment IDs and repeated wording remain distinct. Fresh fallback attempts rebuild the required full context. A question request is rejected when newer queued human direction makes it stale. Harness access policy remains owned by execution configuration. **Steps to reproduce** 1. Build a task with a description and current comments. 2. Capture the actual adapter or runner input. 3. Compare source ownership and task-envelope nesting. 4. Queue a human comment before a continuation requests a question. 5. Trigger a failed resume and inspect the fresh retry input. 6. Run the focused adapter, interaction, runner, and browser checks. ## What Changed - Add shared prompt-section selection at the provider-attempt boundary. - Deliver owned assignment context through native, legacy CLI, ACP, gateway, cloud, Pi, Kimi, Grok, Gemini, OpenCode, Cursor, OpenClaw, and Hermes paths. - Rebuild full or compact context after resume recovery changes the attempt. Add native and Claude ACP tests of actual recovery requests. - Preserve custom templates, loaded instruction files, execution policies, and older active-session formats. - Record continuation source metadata and reject stale question creation under the issue-row lock. - Add explicit Product E2E context-integrity profiles, prerequisite gates, credential-isolation checks, and report fixtures. - Bypass service-worker forwarding for same-origin Vite development modules. A real Chromium test fails with resource exhaustion before the repair and passes after it. Production asset caching keeps its existing policy. - Add browser diagnostics and service-worker module-loading regressions. - Add an explicit zero-retry eval option. The default retry behavior remains unchanged. Each campaign records its effective policy. - Remove the model-facing working-directory sentence from four prompt builders. Existing workspace, sandbox, permission, and custom-template configuration remains unchanged. - Align the everyday workflow assertion with the current 47-entry catalog. Compared with current upstream master, the branch carries the context-ownership implementation and its tests, the explicit context-integrity catalog and evidence harness, and the focused browser regression checks. ## Verification **Merge assessment:** focused regression evidence supports merge. This is not full completion of the original broad qualification matrix. The maintainer has authorized merge after fresh verification of the master integration. - Current head: `bbd52f82114eabf09bc7b1a7e97d54a5b43bbc00`. This integrates current master `2f585ef26a1814fa209715242d1ca791b63e4c4e`. All 14 conflicts are resolved. Cancellation checks, workspace finalization, native Grok support, and both sets of tests are retained. - Current-head Greptile: **5/5**, with no blocking findings. The review names this exact commit. All **59 reported checks are terminal: 55 successful, 4 skipped, zero pending or failing**. This includes the full root general and serialized suites, separate runner checks, typecheck, build, canary, browser E2E, Docker, and security checks. The successful legacy security status is included in that total. - After integration: workspace typecheck and full build passed. Separate runner checks passed: **2,160 TypeScript tests (10 skipped), 582 Rust tests, and 39 preparation checks**. Other passing checks include 621 Product E2E harness units, 376 focused shared/adapter tests, 160 real-database/API tests, 86 Hermes tests, 18 browser-support checks, and Product E2E typechecking. The complete root suite passed in CI. The duplicate local monolithic root run was stopped after that CI result; it is not counted as a completed local pass. - New native recovery coverage retains full assignment, completion contract, and explicit skill selection after safe replacement, for old and prepared input formats. Full native session test file: **136/136 passed**. - New Claude ACP coverage captures actual fresh, resumed, and missing-session fallback requests. It verifies one assignment copy, comment order, identical text under distinct comment IDs, and full fallback context. Full file: **33/33 passed**. Both affected TypeScript checks passed. - Existing deterministic tests cover source revisions, approval and trust boundaries, completion validation, custom templates, compatible sessions, standalone driver wrapping, and maintained adapter transport requests. - Provider-free browser support: **17/17 passed** after the master merge. Service-worker unit tests: **33/33 passed**. The module-overload regression failed before the repair and passed after it in real Chromium. ### Fresh live comparisons The new batch ran exactly four Product E2E attempts. **All four passed on the first attempt; no retries.** Each has six terminal matchers plus the existing browser lifecycle and invariant checks. | Exact case ID | Control | Candidate | |---|---|---| | `core-compatibility.runner-codex.local.plan-revise-accept` | Passed | Passed | | `local-session-integrity.runner-acpx-claude.local.structured-question-restart-resume` | Passed | Passed | The plan case checks a revised canonical plan and revision-bound approval before completion. The question case restarts the server before submitting the answer, then verifies the continuation completes. Control source is `dfa4e1bda8d50a1a01746603251a9128dbe9d0d6`. Candidate source is `79fcdb5dece501d28064ea9da306603881b46f0c`. They use identical frozen definitions and provider versions: Codex `0.156.0` with `gpt-5.6-sol`; ACPX `0.13.1` / Claude ACP `0.73.0` with `claude-sonnet-5`. The September 24 head added master browser recovery and test-only changes. The September 28 head also integrates newer master changes, including cancellation, workspace finalization, and native Grok. These are frozen-source live results, not exact-head live runs. The candidate received one description copy where the control initially received three. The submitted initial plan envelopes were 7,969 versus 19,097 characters. Question envelopes were 7,592 versus 18,919. These are structural measurements, not whole-provider token or dollar savings. ### Earlier evidence and failed attempts - The preceding fresh batch has four effective passing pairs: OpenCode comment continuation and assigned skill, native Codex comment continuation, and native Claude comment continuation. It retains **11 attempts: eight passed and three failed**. - Original failures remain recorded: missing local PostgreSQL library links before task creation; host-sleep cleanup after task/page checks passed; and a Claude **control** session-open rejection before a model turn. Setup was repaired identically on both worktrees. The permitted unchanged infrastructure retries passed. The underlying Claude provider startup error was not retained and remains unknown. - Older R2 retains **17 passes and one failure** across 18 attempts, including eight both-pass native/legacy Codex/Claude pairs. Its OpenCode blank-page failure led to the service-worker repair. R2 is historical evidence: master changed the native fixed prompt and removed duplicate wake environment data afterward. - The September 24 CI run initially failed one unrelated preview readiness test (`ECONNREFUSED` on its local fixture). Its test and production code match master. Isolated local verification passed **28 tests, 3 skipped**. One unchanged CI retry passed the full shard: **831 passed, 1 skipped**, including all **31 preview-exposure tests**. The aggregate CI gate passed afterward. The precise startup cause remains unknown; a port race is a hypothesis, not a proved cause. ### Limits The original wider profile/workflow matrix, repeated trials, and remote Daytona qualification are incomplete. These results support a focused merge recommendation, not statistical equivalence or universal harness qualification. Some usage receipts are missing in both variants, so no token or dollar savings are claimed. The $500 ceiling was preserved using conservative allowances; failed attempts and unknown charges remain in the ledger. Reproduce the focused additions with `pnpm exec vitest run packages/adapters/claude-local/src/server/acp.test.ts` and `pnpm --filter @paperclipai/paperclip-runner exec vitest run src/native-session-runtime.test.ts`. Full checks use `pnpm -r typecheck`, `pnpm test:run`, `pnpm build`, and the separate runner checks. Paid evals require the frozen definitions, profiles, and credentials; do not use `--all` as a substitute for the selected cases. ## Risks - Context placement changes can affect model behavior. Deterministic checks cover the selected paths, but live qualification remains incomplete. - The stale-question guard can reject a request when queued human comments arrived during the run. This is intended. - New stored inputs and model envelopes retain compatibility readers for older active sessions. - Custom templates may intentionally repeat content. - Removing a model-facing working-directory sentence does not change filesystem, command, sandbox, or permission configuration. - The worker bypass applies only to same-origin development module paths. Cache-policy tests preserve private-response handling and production asset caching. Mounted HTTP fixture changes remain test-only. - This PR does not claim measured token savings or statistical equivalence across every harness. ## Model Used OpenAI Codex, exact model gpt-6-astra, with repository tools and code execution. Bounded supporting work used gpt-5.6-luna and gpt-6-luna. The serving context-window size is not exposed in this task. ## Checklist - [x] I have included a thinking path that traces from project context to this change - [x] I have specified the model used (with version and capability details) - [x] I have checked ROADMAP.md and confirmed this PR does not duplicate planned core work - [x] I have searched GitHub for duplicate or related PRs and linked them above - [x] I have described the issue in-PR using the required issue fields - [x] I have not referenced internal/instance-local Paperclip issues or links - [x] My branch name describes the change and contains no internal ticket id - [x] I have run the focused local checks and they pass - [x] I have added or updated tests where applicable - [x] I have updated relevant documentation to reflect these changes - [x] I have considered and documented risks above - [x] All current-head Paperclip CI gates are green - [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups for the current head - [x] I will address all Greptile and reviewer comments before requesting merge --------- Co-authored-by: Paperclip <noreply@paperclip.ing>	2026-09-28 14:49:14 -05:00
Devin FoleyandPaperclip	5ee9e751fb	fix(runner): discover assigned tools when direct catalogs exceed limits (#14218) ... Keep assigned app tools accessible when the combined Runner catalog exceeds its operation or byte limits. Reserve task and completion tools, then expose bounded discovery and call tools for large catalogs. Fetch oversized schemas in reauthorized chunks without blocking later search results. Retain task ownership, work-mode restrictions, pinned assignments, current gateway authorization, approvals, and audit. Small catalogs stay direct. Validation: 46 focused server tests, two Runner capacity tests, local typecheck/build, 52 passing CI checks, and Greptile 5/5 with no open findings. Co-Authored-By: Paperclip <noreply@paperclip.ing>	2026-09-27 00:22:16 -07:00
DottaandPaperclip	422287eecd	fix: preserve runner recovery, warm sessions, and task outcomes (#13338) ... ## Thinking Path > - Paperclip is the open source app people use to manage AI agents for work. > - The native runner connects task messages, provider execution, and task outcomes. > - First-time user tests exposed gaps in recovery, completion permissions, message delivery, and Stop behavior. > - These gaps left usable output hidden, completed work waiting for bookkeeping, or safe work unable to continue. > - This pull request fixes the shared lifecycle and receipt paths while preserving process ownership and action checks. > - Users can continue work with accurate task state and durable messages. ## Linked Issues or Issue Description **What happened?** A stopped local Codex execution could remain blocked even after its processes had stopped and its complete transcript proved that no external action needed replay. Claude under Conservative permissions could fail to call task completion tools. Recovery could reuse an assistant item ID and overwrite prior output. A delivered comment could remain marked uncertain after navigation. Stop could look like Pause or a new recovery incident. Workspace contention could look like cancellation. A direct reply reopening Done could enter a clarification loop. **Expected behavior** Recover automatically only with verified termination and complete action receipts. Preserve answers and messages. Keep task completion available under Conservative permissions without broad tool access. Show crashes as Blocked, actual human decisions as In Review, and ordinary workspace contention as waiting. Stop the current response and allow a new direction. **Steps to reproduce** 1. Create ordinary response tasks with local Codex and Claude Code, then send follow-up messages through the task composer. 2. Interrupt a disposable local Codex runner during text-only work. Verify automatic continuation and retained output. 3. Stop a response, send a new request, answer a clarification, and reopen completed work with another message. 4. Navigate or reload while a comment submission is pending. Confirm the exact persisted request receipt settles it without removing newer draft text. 5. Run two tasks in a shared Daytona workspace. Confirm waiting does not appear as failure. **Paperclip version or commit** Initial acceptance baseline: `c9021c6721f91e2c74bd9fee9d3fd41c999d17b7`. Current integration base: `6cef9743c`. Both operator-interruption and workspace-waiting guards are preserved; native restart and legacy permission rules remain documented. **Deployment mode** An isolated source-built test-drive instance, with real local Codex and Claude Code providers and disposable Daytona environments. Related work: #13314, #13316, #13327, #13344, #13239, #13254, #13163. This PR addresses additional failures from ordinary task journeys, including controller restart handoff and repeated warm sandbox setup. Historical task status reconciliation is excluded. ## What Changed - Persist runner ownership immediately at spawn and resume an explicitly adopted runner even when the controller crashed before the first driver checkpoint. Detach the controller safely across graceful restarts, including session startup. Prevent an old finalizer from suspending or signaling an adopted runner. Checkpoint idle warm sessions before shutdown. Preserve the same run and queued follow-up messages. - Scope saved legacy queue successor checks to the queue owner while preserving ordinary task locks, operator identity, assignment gates, and exactly-once delivery. - Preserve managed Codex credential files when an old session is detached for restart; normal owned cleanup still copies refreshed auth back and removes the scoped copy. - Reuse the bound warm shared sandbox and fully verify an existing staged provider pack before using it. This avoids repeated uploads when the pack is already valid. - Add a narrow local Codex replacement path with stopped-process proof, a closed transcript inventory, exact completion receipts, and fresh-session lineage. Preserve no-replay holds when evidence is incomplete. Recovery may clear only the same run's recorded Blocked status version; manual re-blocking and dependency changes invalidate that receipt, while queued comments do not. Later blocks stop scheduled, queued, and final dispatch; queued/final checks re-read dependencies even when the task status stays In Progress. - Permit only task delivery and human-input tools through the isolated Claude runner's exact task bridge. - Scope assistant item identity to the provider turn and ignore only authority-free Codex skill-change notifications during startup. - Reconcile composer submissions by client request ID across response loss, navigation, and reload. Retain text typed during delivery. - Keep acknowledged run-only Stop neutral and show workspace contention as waiting. Project exhausted native failures as Blocked. - Restore the guarded task-page retry action for failed legacy runs, including the server-supported explicit new-attempt path for stopped conversation adapters. Preserve native/process recovery holds and avoid promising Retry while a decision or execution gate hides it. - Refresh delivered artifacts and handle direct user replies that reopen completed work without a clarification loop. - Check the embedded PostgreSQL PID, data directory, and actual port before connecting or migrating. - Document accepted behavior and add focused regressions at lifecycle, route, transcript, and UI boundaries. ## Verification - Final head `fece606ac2` passes the complete GitHub CI matrix: **34 green checks, two expected Storybook skips, no failures or pending checks**, including `ci / verify`, `ci / e2e`, full runner verification, typecheck, build, every server/workspace shard, and all browser shards. [CI run](https://github.com/paperclipai/paperclip/actions/runs/34727183287). Greptile is **5/5 with no open findings**. The final two commits only refine test fixtures; both affected suites pass 24/24 locally and in CI, with server typecheck green. - Complete local Vitest coverage uses the canonical groups/shards: all 635 general server suites, all 145 serialized suites, and all workspace packages. The aggregate began on `0a8001c18` while the final queue fix arrived: 23,903 passed, five failed, 87 skipped. The five port/socket/timing failures passed unchanged in follow-ups (60 tests in the exposure/file suites and 412 tests covering the serialized failures and unrun tails). The final queue/operator-identity suites separately passed 52/52. This is aggregate coverage plus explicit reruns, not a pristine single-command final-head run. - After integration with current master, queue/operator-identity/continuation suites passed 162/162 and affected UI suites passed 140/140. ACP Stop/continuation and legacy task/Inbox/message browser suites passed 9/9, including both task recovery Retry and thread Try again, automatic saved-message delivery, exactly one new run, Done, and retained output after reload. The default process Stop/Pause/Resume browser case passed (the native-provider case is opt-in and skipped by default). The complete Board attachment/receipt browser suite passed 11/11 on a disposable instance, covering both composers, exact receipts after lost responses, no replay, bound attachments, and newer drafts after reload. - Blocking-intent regressions cover pre-existing Blocked, a mismatched run/cause, an explicit manual re-block, changed dependencies, a queued comment after failure, and a block arriving between scheduling and provider dispatch. The negative cases reproduced before the fix. All 478 affected executor/recovery/dispatch tests passed; both database suites ran separately after availability-probe skips in the first combined command. The final late-dependency check passed all 143 affected recovery/dispatch tests (zero skips) after two new negative cases reproduced the bug. - Focused runtime regressions cover awaited runner ownership publication, authenticated adoption before the first checkpoint, old-finalizer detachment, idle and busy warm-session shutdown, rejected checkpoint propagation, provider-pack verification, and managed-Codex credential preservation. Four managed credential detachment cases reproduced the bug before the fix; normal owned cleanup still succeeds exactly once. - Live local Claude: SIGKILL 2.6 seconds into startup recovered the same run automatically in 53 seconds, then a normal follow-up completed in 24 seconds. SIGTERM 2.5 seconds into startup preserved the same run (54 seconds) and its queued follow-up (21 seconds). Answers remained visible and the task reached Done. - Live Claude Daytona: a warm follow-up retained its sandbox and fell from 121 seconds to 44 seconds. A separate cold turn took 127 seconds; after controller shutdown and checkpointing, its follow-up completed in 33 seconds with the same sandbox, workspace, native session, and runner. Both answers remained visible and the task was Done. - Other live journeys covered task completion and follow-up with local and Daytona Codex, local Codex crash recovery, Stop then new direction, clarification response, live artifact refresh, and shared-workspace waiting. - Validation limits: the opt-in native composer Stop/Pause→subtree Resume fixture exposes terminal/result ordering and subtree-cancellation attribution bugs that can leave a child task blocked; that new finding is assigned to a separate follow-up and is not claimed fixed here. Default CI skips this optional native-provider fixture. Managed-Codex credential handoff and the queue-agent integration use automated regression evidence. Cold custom provider-pack uploads still add startup latency. ## Risks - Automatic replacement remains deliberately narrow: local Codex, verified stopped identities, unchanged retained state, and a complete text/completion-only turn. Unknown actions, partial history, or changed ownership remain blocked. - Claude completion permission handling changes an upstream package patch. The exact isolated task bridge must remain pinned; unrelated tools keep their existing permissions. - New task failure projection changes user-visible status. No historical status backfill or database migration is included. - This is a broad lifecycle fix across server and UI. Live proof covers graceful local Claude restart during startup and idle Claude Daytona session recovery across controller shutdown. Live abrupt SIGKILL during local Claude startup also recovered the same run. Unknown ownership or missing action evidence still blocks reuse. Cold custom provider-pack uploads still add startup latency; this change avoids unnecessary repeat uploads. ## Model Used OpenAI GPT-6 (Codex), with reasoning, code execution, browser automation, and tool use. The exact hosted model ID and context window are not exposed in this task. ## Checklist - [x] I have included a thinking path that traces from project context to this change - [x] I have specified the model used (with version and capability details) - [x] I have checked ROADMAP.md and confirmed this PR does not duplicate planned core work - [x] I have searched GitHub for duplicate or related PRs and linked them above - [x] I have either (a) linked existing issues with `Fixes: #` / `Closes #` / `Refs #` OR (b) described the issue in-PR following the relevant issue template - [x] I have not referenced internal/instance-local Paperclip issues or links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip` URLs) - [x] My branch name describes the change (e.g. `docs/...`, `fix/...`) and contains no internal Paperclip ticket id or instance-derived details - [x] I have run tests locally and they pass - [x] I have added or updated tests where applicable - [x] I have updated relevant documentation to reflect my changes - [x] I have considered and documented any risks above - [x] All Paperclip CI gates are green - [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups - [x] I will address all Greptile and reviewer comments before requesting merge --------- Co-authored-by: Paperclip <noreply@paperclip.ing>	2026-09-12 19:41:15 -05:00
DottaandPaperclip	663c44cb2b	fix: continue conversations after confirmed remote runner stop (#13254) ... ## Thinking Path > - Paperclip is the open source app people use to manage AI agents for work. > - Users can stop a run and send another message on the same task. > - Remote runners need evidence from their sandbox provider that execution stopped. > - Local process checks cannot prove that a remote process exited. > - This pull request records provider stop receipts and uses them for conversation admission. > - New user messages can proceed after confirmed cleanup without repeating interrupted actions. ## Linked Issues or Issue Description Refs #13237 and #13239. Related: #13163 covers app-restart recovery; this change covers an explicit stop followed by a new user message. **What happened?** A stopped remote Claude ACP task kept its execution hold after Daytona cleanup succeeded. Native runners also rejected remote process identities and retained stale session cleanup gates. A message sent during cleanup could stay deferred after the sandbox stopped. **Expected behavior** After the provider confirms that the old execution stopped, a new user message starts a fresh turn. Pending user messages must not need another message to trigger admission. Prior action outcomes remain recorded. **Steps to reproduce** 1. Start a long-running task in Daytona with a legacy Claude ACP or native ACP runner. 2. Cancel the run while its tool is active. 3. Send a new message immediately, or after cleanup completes. 4. Observe the execution hold despite the old sandbox having stopped. **Paperclip version or commit** Reproduced on master at 7b829efdf6. The branch is rebased on current master. ## What Changed - Add optional provider stop receipts to sandbox release and destroy hooks. Old plugins remain compatible. - Bind receipts to the company, run, lease, and provider resource. Failed cleanup cannot supply stop authority. - Acknowledge legacy remote cancellation after confirmed termination. - Admit native user continuations using remote receipts instead of host process checks. - Retire only the settled cleanup owner matching the stopped company, run, and provider resource. Isolate cleanup gates between remote sandboxes, including two sandboxes owned by one run. - Reconsider user messages deferred during remote cleanup through normal admission, including successful later cleanup retries. - Preserve receipts through cleanup retries and inline cleanup after failed startup. - Permit provider destruction after a terminal remote checkpoint failure. Busy ownership still blocks destruction. - Add regression tests and update execution semantics. - Give the real preview fixture ten seconds for cold startup. Reuse release-mode Rust artifacts for the filtered parity checks, avoiding a duplicate debug test build that exhausted CI disk twice; test filters and assertions are unchanged. ## Verification - Recursive typecheck and build passed. - Targeted server, Daytona plugin, and native runtime tests passed. They cover missing or mismatched receipts, failed cleanup, local process protection, exact cleanup ownership, and a message sent during cleanup. - Live Daytona tests passed for legacy Claude ACP, native per-turn, native warm, and a newly created native runner using disposable sandboxes. Each original run was cancelled; its explicit follow-up completed with no execution hold. The disposable case confirmed a new sandbox after deletion. - Native tests used the provider's Opus 5 selector, `opus[1m]`, and the Linux runner bundle from the sandbox image. Existing checkpoint/sync finalization warnings remained visible before the native follow-ups reached committed success. This change does not repair those separate warnings or guarantee recovery of uncheckpointed files. - A direct live provider test also passed with the final delete-wait change: the destroy hook returned its receipt only after Daytona reported the sandbox destroyed. The final Daytona plugin suite passed all 153 tests; its build passed. - After rebasing on master, 284 targeted server/plugin tests and 313 native executor tests passed. The native session runtime suite passed all 128 tests. - The review regression passed all 145 tests across the continuation, environment runtime, and pending-cleanup sweep suites. Recursive typecheck and build passed again after that fix. - The security review's exact-resource finding is fixed. Cleanup completion requires the same provider-resource scope used during session creation. All 128 native runtime tests, 61 server continuation/cleanup tests, recursive typecheck, and build passed after this fix. The two-sandboxes-in-one-run regression proves one receipt cannot retire the other quarantine. - Greptile reviewed the final commit at 5/5, the security scan passed, and no review threads remain unresolved. The final native executor suite also passed all 313 tests. - The full local suite reached 10,616 passing tests before stopping on four failures. All four now pass in focused reruns: the final-code continuation/teardown suites, the attachment suite, and the native session test after building its required fake-provider binary. The original full run overlapped source edits and did not reach the remaining groups; it is not counted as a full-suite pass. - The preview exposure suite passed all 25 applicable tests (three Linux-only tests skipped locally) after the startup allowance change. Both release-mode Rust parity commands passed locally. All final-head PR checks passed, including full server/workspace/browser test groups, full native runner verification, build, typecheck, canary dry-run, and the aggregate gates. ## Risks - A provider must return a receipt only after confirmed termination. Incorrect provider claims could permit overlapping execution. - Older providers without receipts retain the existing hold. Missing evidence, failed cleanup, active ownership, pauses, approvals, and budgets still block admission. - This change preserves unknown action outcomes and old checkpoints. It does not authorize replay or alter historical runs. - No database migration or telemetry contract change is required. ## Model Used OpenAI GPT-6 through Codex, with repository inspection, code execution, and browser tools. The exact backend revision and context-window size are not exposed in this session. ## Checklist - [x] I have included a thinking path that traces from project context to this change - [x] I have specified the model used (with version and capability details) - [x] I have checked ROADMAP.md and confirmed this PR does not duplicate planned core work - [x] I have searched GitHub for duplicate or related PRs and linked them above - [x] I have either (a) linked existing issues with `Fixes: #` / `Closes #` / `Refs #` OR (b) described the issue in-PR following the relevant issue template - [x] I have not referenced internal/instance-local Paperclip issues or links (only public GitHub references) - [x] My branch name describes the change and contains no internal Paperclip ticket id or instance-derived details - [x] I have run targeted tests locally and they pass - [x] I have added or updated tests where applicable - [x] I have updated relevant documentation to reflect my changes - [x] I have considered and documented any risks above - [x] All Paperclip CI gates are green - [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups - [x] I will address all Greptile and reviewer comments before requesting merge --------- Co-authored-by: Paperclip <noreply@paperclip.ing>	2026-09-11 15:18:37 -05:00
DottaandPaperclip	889947c238	feat: add experimental native chat connectors (#13038) ... ## Thinking Path > - Paperclip is the open source app people use to manage AI agents for work. > - People also ask agents for work in their existing chat tools. > - Each external conversation needs one task and a current authorized source. > - Retries, Stop, and provider failures must not duplicate work or expose private data. > - The first chat PR establishes the opt-in provider and data contracts. > - This PR adds experimental channel integration and its durable control plane. > - Users can request work from connected channels and inspect delivery in Paperclip. ## Linked Issues or Issue Description Refs #13100 and #13092. This is the second of exactly two chat PRs. Foundation #13100 is merged and changed 143 files. Runner prerequisite #13092 is also merged. This PR changes 400 files against master, below the 500-file review limit. It contains no wireframe images or HTML galleries. ## What Changed - Add native Slack, GitHub, Microsoft Teams, Telegram, and Discord chat connections. Keep chat disabled unless the operator enables experimental chat connectors. Preserve the production GitHub tool connection and its normal setup path. - Bind each provider bot identity to one immutable Paperclip agent. Bind each admitted external conversation to one task. Paperclip owns tasks, runs, permissions, and audit records. - Add durable admission, per-conversation queues, questions, task controls, progress, final replies, images, files, and delivery receipts. Board comments remain internal unless explicitly sent to the channel. - Check current identity, provider reach, resource access, credentials, runtime generation, and exact source before provider effects. Keep private responses private. Never send raw reasoning, private logs, credentials, or tool arguments. - Hold uncertain sends for explicit audited resolution. Make Board Send-to-channel atomic and idempotent. Keep reconnect and setup credentials in Paperclip secret storage. - Preserve current native-runner authority across retries, lost acknowledgements, and recovery. Keep immutable input and completion contracts separate from newer user input. Receipt reconciliation cannot launch a provider. - Reconcile chat close/new ordering and provider-effect lock order. Audit resource access changes in the same transaction. Submit only the selected resource from each UI toggle so stale pages cannot undo unrelated access changes. - Drain Codex stdout before certifying process exit. Bound the drain with the existing shutdown grace. Preserve observed terminal authority without treating an undrained process as successful or reusable. - Incorporate master `018ca5da` with its ACP Stop, mobile task layout, runner packaging, and official lock changes. Preserve dedicated chat-answer continuations in both directions when ordinary queued comments are adopted after Stop. - Fence late adapter readiness behind an earlier Stop for the same run. Preserve verified cleanup for registered adapters. Handle single Stop, agent pause, duplicate Stops, and failure release without creating a false cancellation receipt. - Incorporate master's `6dd48cad4` wake-queue extraction. Preserve exact failed-chat retry authorization and lineage, retired question-source suppression, and the block on generic recovery that would discard the admitted source. Fresh deferred input retains its separate promotion path. - Incorporate master `2a05b5ed3` and its queue-admission extraction, simplified transaction ports, and separate runner CI job. Preserve exact durable receipts, actor separation, and dedicated-answer isolation through the new module. A failed receipt insert rolls back the accompanying deferred-wake merge. ## Verification Current head: `afe19299d06253cb628eb398e91d1200ea9f412a`, incorporating master `2a05b5ed3457ea33efd6895520447d1d97fe98d8`. The conflicts are resolved. This successor fixes two test-harness boundaries exposed by CI: per-case route-module preparation and actual durable-save completion before intentional runner termination. Production code and all existing test/turn deadlines are unchanged. [Exact-head Greptile review](https://github.com/paperclipai/paperclip/pull/13038#issuecomment-5587250594) is **5/5**, completed September 10 at 13:20:55 UTC, with no actionable findings or open review threads. [Fresh exact-head CI](https://github.com/paperclipai/paperclip/actions/runs/34481724341) passes **all 24 jobs**, including Build and both required aggregates. Normal exact-head guarded merge was attempted and rejected by the remaining branch approval policy: CODEOWNER review is required and no human approval is present. Normal **squash auto-merge is enabled** as of September 10 at 13:36:26 UTC. Requested CODEOWNERS have been notified; no approval bypass or self-approval was used. Earlier-head results below remain historical evidence, not qualification of this successor. - Final exact-head Linux evidence: 995/995 chat integration cases; 36/36 agent-skills routes; 35/35 runner live-session cases, including real process kill/resume; 1948 runner Vitest cases with three existing benchmark/platform guards; 870/870 API-authority cases; and 104 browser cases with four existing optional skips. Rust, conformance/replay, full repository build, typecheck, canary, all server/workspace shards, and both required aggregates pass with normal CI concurrency. Earlier failed attempts remain recorded below. - Latest test-only qualification: 141/141 route/permissions/authentication cases pass in separate cold forks, with plain server types and independent review clear. The real-runner suite passes 35/35, with plain runner types and independent review clear. A controlled premature-save acknowledgement fails as expected; matching ownership/effect/process evidence, rejected saves, real turn outcome, test abort, and pre-kill liveness are covered. No local reproduction of the original CI scheduling failure is claimed. The preceding [CI run](https://github.com/paperclipai/paperclip/actions/runs/34479680858) passes 21/24 jobs, including all 995 Linux chat cases and browser aggregate (104 passed, four existing optional skips); only Build, the skills serialized shard, and the required verification aggregate fail. Its exact-head Greptile review was 5/5. Both failed job logs are retained. - Final fixture qualification: all eight focused Discord cases and all 995 chat integration cases pass. The exact modal statement/PID is observed before taking the real connection lock; the test then proves its actual blocking relationship before mutation. Original SQL execution, provider behavior, negative assertions, and 1s/15s timeouts remain unchanged. Independent review is clear and test/production hashes remain frozen. The preceding [CI attempt](https://github.com/paperclipai/paperclip/actions/runs/34477184777) passed 22 jobs, including Build/runner, typecheck, canary, all other test shards, and browser aggregate (104 passed, four existing optional skips); the two fixture failures and failed verification aggregate remain recorded, not relabeled as a pass. - Current queue-module composition: 308/308 recovery/batching/queue/Stop tests; 995/995 full chat integration; 89/89 module tests, including real PostgreSQL receipt-insert rollback; 24/24 workflow/module-boundary tests; plain server and UI types. All four actual local process/ACP browser paths pass in 1.4 minutes. Fresh databases, no skips or retries, stable reviewed source hashes. The initial boundary failure is retained; its no-op service wrapper was removed without changing recovery context or weakening the check. An exploratory standalone test-directory typecheck fails because its new upstream transformation config is not a standalone typechecking project; standard CI/build does not invoke it, and no configuration was weakened to suppress those diagnostics. - The preceding head `e02a63d462ce5d47433b0aeb632bb6fd20aab1ba` passed [all 24 CI jobs](https://github.com/paperclipai/paperclip/actions/runs/34436462958) and exact-head Greptile review at 5/5. Required CODEOWNER review prevented its normal merge before master advanced again. - Final extracted-module composition: 307/307 recovery, batching, queue and Stop-control tests; 995/995 full chat integration; 49/49 module tests including eight PostgreSQL adapter cases; and 19/19 issue-update tests. Plain server types pass. All four actual local process/ACP browser paths pass in 1.3 minutes. Fresh databases, no skips or retries in these cohorts, frozen source hashes, and independent review clear. - The preceding head `3e4e1c1c` passes [all PR CI jobs](https://github.com/paperclipai/paperclip/actions/runs/34415826820), including Build and required `ci / verify` and `ci / e2e`. Both the original Rust failure and the previously load-sensitive lineage fixture pass with unchanged Linux concurrency. Master advanced afterward and required this reconciliation. - Final master composition: 448/448 focused UI tests, 186/186 adapter tests, 24/24 queue/control tests, and 11/11 packaging tests. Plain UI, server, shared, and adapter types pass. Token gates and diff checks pass. Independent server and UI reviews are clear. - Stop-registration regression: both real-service cases fail against exact `a95` source and pass with the fix. The full corrected recovery/control suite passes 265/265. Duplicate-owner and failed-Stop controls also pass. Plain server types pass. The readiness barrier prevents provider startup without adding an acknowledgment to an already terminal run. - Final qualification strengthens terminal-field equality and repeats both affected cases successfully on a fresh database. All four actual local process/ACP browser paths pass again in 1.3 minutes, without skips or retries. The final screenshot shows Cancelled, a paused subtree, retained input, and no error toast. - Two new actual-service regressions fail before the merge fix. They prove that queued-comment adoption could consume a dedicated chat answer or add unrelated input to that answer. The fixed four-case cohort passes, including ordinary upstream continuation and adapter Stop controls. Full recovery passes 257/257. All four actual local process/ACP Stop browser flows pass in 1.4 minutes, without skips or retries, on a fresh database. - The unchanged runner artifact was qualified with 171/171 transport tests, 870/870 API-authority tests, conformance 1/1, and replay 11/11. Six controlled reader tests prove the exit/drain repair. Its local serial Rust workspace passed 546 top-level cases plus two invoked helpers; the later passing Linux CI supplies default-concurrency evidence. - Prior exact-source full chat integration passes 995/995. Settings regressions cover concurrent stale pages, 501 destinations, pending state, rejected updates, and explicit retry. These deterministic tests do not prove live provider behavior. - Retained failed attempts and their causes are in the [qualification log](https://github.com/paperclipai/paperclip/blob/afe19299d06253cb628eb398e91d1200ea9f412a/doc/plans/chat-adapters/2026-09-08-chat-queue-and-webhook-repair.md). The first merge adapter run timed out while macOS slept for 290 seconds. Its unchanged repeat passed with a temporary sleep guard. No assertion, deadline, or CI gate was weakened. Review commands include `pnpm --filter @paperclipai/server exec vitest run src/__tests__/heartbeat-process-recovery.test.ts src/__tests__/issue-queued-comments-routes.test.ts` and `pnpm exec playwright test --config tests/e2e/playwright.config.ts tests/e2e/acp-stop-continuation.spec.ts`. Database suites require fresh disposable databases. See the [browser runbook](https://github.com/paperclipai/paperclip/blob/afe19299d06253cb628eb398e91d1200ea9f412a/doc/plans/chat-adapters/2026-09-04-chat-adapters-browser-e2e-runbook.md) for provider setup and separate live acceptance steps. ## Risks - This remains experimental. Deterministic tests and bounded live evidence do not establish every provider feature, tenant, permission layout, or media shape. Teams work-tenant qualification is still open. - Failed and uncertain provider effects remain visible and can require operator action. A transport receipt does not prove recipient visibility. - Native controller and runner artifacts must remain compatible. Preserve lease ownership, terminal authority, source binding, and quarantine during future changes. - Access and audit rows commit together, but activity notifications remain best-effort. This is not a new durable event outbox. - The PR operation does not deploy a live server, replace its runner, or change provider permissions. Remaining live qualification is documented in the [temporary handoff](https://github.com/paperclipai/paperclip/blob/afe19299d06253cb628eb398e91d1200ea9f412a/doc/plans/chat-adapters/2026-09-08-open-qualification-followups.md). ## Model Used OpenAI Codex assisted with implementation, tool execution, testing, and review. The work records `gpt-6-astra` assistance. The environment does not report a context-window size. No private reasoning traces are included. ## Checklist - [x] I have included a thinking path that traces from project context to this change - [x] I have specified the model used (with version and capability details) - [x] I have checked ROADMAP.md and confirmed this PR does not duplicate planned core work - [x] I have searched GitHub for duplicate or related PRs and linked them above - [x] I have either (a) linked existing issues with `Fixes: #` / `Closes #` / `Refs #` OR (b) described the issue in-PR following the relevant issue template - [x] I have not referenced internal/instance-local Paperclip issues or links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip` URLs) - [x] My branch name describes the change (e.g. `docs/...`, `fix/...`) and contains no internal Paperclip ticket id or instance-derived details - [x] I have run tests locally and they pass - [x] I have added or updated tests where applicable - [x] I have updated relevant documentation to reflect my changes - [x] I have considered and documented any risks above - [x] All Paperclip CI gates are green - [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups - [x] I will address all Greptile and reviewer comments before requesting merge --------- Co-authored-by: Paperclip <noreply@paperclip.ing>	2026-09-10 10:06:45 -05:00
DottaandPaperclip	35fdc0c66b	fix: make task recovery durable and preserve current requests (#13075) ... Make task recovery durable and preserve the latest user request across native and legacy continuations. Keep routine recovery quiet and prevent replay when action outcomes are uncertain. Co-Authored-By: Paperclip <noreply@paperclip.ing>	2026-09-09 09:14:25 -05:00
DottaandPaperclip	7ed122911b	Add end-to-end session goals to Paperclip Runner ... Add capability-aware slash-goal controls, durable provider goal state, PRP v2 negotiation, autonomous goal execution, and safe local session recovery. Integrate with current master, preserve provider session identity, and verify the browser goal/chat/replacement/clear workflow and unsupported-agent rejection. Co-Authored-By: Paperclip <noreply@paperclip.ing>	2026-09-08 16:18:47 -05:00
Dotta	bcc6fe7a44	fix(runner): restore multi-turn remote sessions (#12840) ... ## Thinking Path > - Paperclip manages AI agents and their work. > - The runner executes agent turns on local and remote providers. > - A remote per-turn session must save its state before Paperclip releases its sandbox. > - The session runtime returned after 100 milliseconds while the remote checkpoint still ran. > - The next turn also checked the local state path instead of the verified remote backup. > - This pull request waits for the bounded remote close and accepts only a verified suspended backup. > - The benefit is reliable multi-turn execution without weaker identity checks. ## Linked Issues or Issue Description **What happened?** A successful remote agent turn released its sandbox before the runner saved the verified continuation backup. The next turn failed with `runner_state_identity_mismatch`. **Expected behavior** Paperclip must finish the bounded remote checkpoint before it releases the sandbox. A later turn must validate and restore the digest-matched suspended backup. **Steps to reproduce** 1. Run a native ACPX Claude Plan test in a non-reusable Daytona sandbox. 2. Reject the first plan to start a second turn. 3. Observe that the second turn fails before provider execution. **Paperclip version or commit** The failure reproduced at `13775a90b078ff64872f50961ea1b83d575e7bc6`. **Deployment mode** GitHub Actions with a Daytona sandbox. ## What Changed - Wait for the internally bounded remote runner close and checkpoint before the host returns. - Preserve the existing short cleanup bound for other providers. - Validate remote continuation lifecycle from a complete digest-verified backup when local runner state is absent. - Keep corrupt, non-suspended, mismatched, and unverified state fail-closed. - Make native Plan completion and accepted-Plan wake prompts deterministic. ## Verification - A prior 45-cell local campaign passed 44 cells. The only failure was the OpenCode Plan prompt variance fixed here. - A focused OpenCode local Plan rerun passed. - ACPX Claude Daytona message and question cells passed. - Focused regressions cover delayed checkpoint close and verified remote backup lifecycle. - GitHub Build and the focused ACPX Claude Daytona Plan cell will validate this exact head. ## Risks Remote runnerd sessions now wait for their internally bounded close/checkpoint path before returning; generic provider cleanup retains the existing 100 millisecond bound. Durable run success still cannot be reversed. The environment release guard still blocks sandbox destruction when no verified backup stamp exists. ## Model Used OpenAI Codex, GPT-5.6, extended reasoning, with code execution and GitHub Actions inspection. ## Checklist - [x] I have included a thinking path that traces from project context to this change - [x] I have specified the model used (with version and capability details) - [x] I have checked ROADMAP.md and confirmed this PR does not duplicate planned core work - [x] I have searched GitHub for duplicate or related PRs and linked them above - [x] I have either (a) linked existing issues with `Fixes: #` / `Closes #` / `Refs #` OR (b) described the issue in-PR following the relevant issue template - [x] I have not referenced internal/instance-local Paperclip issues or links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip` URLs) - [x] My branch name describes the change and contains no internal task id - [ ] I have run tests locally and they pass - [x] I have added or updated tests where applicable - [ ] I have updated relevant documentation to reflect my changes - [x] I have considered and documented any risks above - [ ] All Paperclip CI gates are green - [ ] Greptile is 5/5 with no open findings - [ ] I will address all Greptile and reviewer comments before requesting merge	2026-09-05 06:25:06 -05:00
Dotta	0a422fda52	feat(runner): add remote execution substrate (#12638) ... ## Thinking Path > - Paperclip is the open source app people use to manage AI agents for work. > - Paperclip Runner gives native runs a durable and governed execution path. > - The current native path runs on the control-plane host. > - Remote environments need an authenticated execution-target contract. > - The contract must not change direct adapters or enable new runtimes by default. > - This pull request adds the remote execution substrate and Daytona ingress. > - The benefit is a bounded base for later remote runner transport work. ## Linked Issues or Issue Description Refs #12616. Refs #12352. **Subsystem affected** Cross-cutting. This change touches runner transport, server orchestration, plugin contracts, and shared settings. **Problem or motivation** Native execution cannot resolve an authenticated runner ingress through a remote environment. The server also lacks one provider-neutral contract for remote execution targets. **Proposed solution** Add a default-off runner preview ingress capability. Add transport-neutral runner connectivity. Add remote execution target and lifecycle handling. Add a Daytona ingress implementation with redacted credentials. **Alternatives considered** A provider-specific server path would duplicate orchestration and authorization. A public endpoint without an environment contract would weaken the trust boundary. **Roadmap alignment** This work supports the Cloud and Sandbox agents milestone. It also supports self-healing runs and governed tool access. ## What Changed - Added execution-target traits for local, SSH, and sandbox environments. - Added plugin RPC contracts for runner ingress endpoints. - Added authenticated Daytona preview ingress. - Added transport-neutral PRP outbound connections. - Added remote runner artifact verification and fail-closed provider selection. - Added bounded native session resume, cancellation, and lifecycle recovery. - Preserved Codex-only selection for fresh experimental runner starts. - Preserved all direct adapter execution and finalization paths. - Removed stale Pi provider-pack requirements that security review rejected. - Kept the rollout controls off by default. - Did not change pnpm-lock.yaml, Cargo, database migrations, or GitHub workflows. ## Verification - GitHub Actions will run the repository test, typecheck, build, security, and policy gates. - Focused tests cover ingress validation, redaction, execution targets, remote lifecycle, cancellation, resume, and legacy adapter selection. - Local tests were not run. The requested verification policy uses GitHub Actions for this series. - `git diff --check origin/master...HEAD` passes. - The diff contains 52 files. ## Risks - Remote execution crosses a trust boundary. - The implementation validates target capabilities, artifact digests, provider-pack pins, and connection metadata. - The feature remains default-off. - Fresh native selection remains Codex-only. - Existing direct adapters remain on the legacy path. - This PR does not yet make remote Codex runnable. The next PR adds the Rust WSS and TLS transport. ## Model Used OpenAI Codex with GPT-5.6. The work used high-reasoning agent mode, repository tools, GitHub tools, and parallel code-audit agents. ## Checklist - [x] I have included a thinking path that traces from project context to this change - [x] I have specified the model used (with version and capability details) - [x] I have checked ROADMAP.md and confirmed this PR does not duplicate planned core work - [x] I have searched GitHub for duplicate or related PRs and linked them above - [x] I have either (a) linked existing issues with Fixes: / Closes / Refs OR (b) described the issue in-PR following the relevant issue template - [x] I have not referenced internal or instance-local Paperclip issues or links - [x] My branch name describes the change and contains no internal Paperclip ticket id - [ ] I have run tests locally and they pass - [x] I have added or updated tests where applicable - [x] I have updated relevant documentation to reflect my changes - [x] I have considered and documented risks above - [ ] All Paperclip CI gates are green - [ ] Greptile is 5/5 with no open P2s, recommendations, or follow-ups - [x] I will address all Greptile and reviewer comments before requesting merge	2026-09-01 01:29:06 -05:00
Dotta	51ad751e0b	feat(runner): integrate Codex native execution (#12616) ... ## Thinking Path > - Paperclip is the open source control plane for teams of AI agents. > - Agent runs currently use direct adapters and their established finalization paths. > - The new runner package needs one production integration before it can execute a real provider through the server. > - That integration must not change direct adapters or expose unsupported providers. > - The rollout must also preserve native runs that were already recorded when the feature flag changes. > - This pull request adds a default-off, Codex-only native execution path and its authority boundary. > - The benefit is a recoverable production vertical slice with explicit compatibility guards. ## Linked Issues or Issue Description **Subsystem affected** Cross-cutting server orchestration and adapter selection. **Problem or motivation** The runner package exists, but the server cannot yet start and recover a governed Codex run through it. A careless integration could also route existing direct adapters into the native runtime or lose cancellation and finalization state. **Proposed solution** Add a hidden `paperclip_runner` adapter for Codex. Keep it behind the default-off instance flag. Bind native execution, resume, cancellation, semantic tool authority, and finalization to the recorded company, issue, run, and coordinator identities. Leave every direct adapter on its existing path. **Alternatives considered** A multi-provider launch was rejected because only Codex has the complete production bridge in this series. Replacing direct adapter execution was rejected because the runner remains experimental. **Roadmap alignment** This work supports governed tool access, action attribution, and self-healing runs. It keeps the integration narrow and default-off. ## What Changed - Add the Codex-only native session executor and persisted resumption path. - Add run-scoped semantic tool projection, authorization, receipts, and idempotency. - Add audited native cancellation with durable issue and coordinator binding. - Add result fencing so a recorded result cannot reacquire the provider and run twice. - Reject fresh runner starts when the rollout flag is off while preserving recorded native recovery. - Keep direct adapters outside native status, cancellation, record creation, and finalization. - Add focused conformance, recovery, cancellation, status, portability, and compatibility coverage. ## Verification - GitHub Actions is the authoritative test environment for this large stack. - The PR policy and lightweight stack checks run while this is a middle PR. - The full required suite runs when this PR becomes the lowest unmerged or top PR. - Greptile will review this exact delta after the branch is pushed. ## Risks - The main risk is routing a legacy adapter into native execution. Runtime selection and heartbeat tests cover that boundary. - The next risk is stale or cross-company cancellation. Durable binding checks and transactional audit persistence cover it. - The adapter remains hidden and default-off. Only Codex is admitted. - There are no database migration, lockfile, or GitHub workflow changes in this PR. ## Stack 1. [Runner package, SDK, and developer tools](https://github.com/paperclipai/paperclip/pull/12608) 2. This PR: Codex production server integration 3. [Provider-neutral task-thread UI](https://github.com/paperclipai/paperclip/pull/12617) ## Model Used OpenAI Codex with GPT-5, extended reasoning, repository tools, and parallel review agents. ## Checklist - [x] I have included a thinking path that traces from project context to this change - [x] I have specified the model used (with version and capability details) - [x] I have checked ROADMAP.md and confirmed this PR does not duplicate planned core work - [x] I have searched GitHub for duplicate or related PRs and linked them above - [x] I have either (a) linked existing issues with `Fixes: #` / `Closes #` / `Refs #` OR (b) described the issue in-PR following the relevant issue template - [x] I have not referenced internal/instance-local Paperclip issues or links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip` URLs) - [x] My branch name describes the change (e.g. `docs/...`, `fix/...`) and contains no internal Paperclip ticket id or instance-derived details - [ ] I have run tests locally and they pass - [x] I have added or updated tests where applicable - [x] I have updated relevant documentation to reflect my changes - [x] I have considered and documented any risks above - [ ] All Paperclip CI gates are green - [ ] Greptile is 5/5 with no open P2s, recommendations, or follow-ups - [x] I will address all Greptile and reviewer comments before requesting merge	2026-08-31 22:51:17 -05:00
DottaandDev Agent	25cf079ec5	feat(runner): add Codex-native application integration (#12591) ... ## Thinking Path > - Paperclip is the open source app people use to manage AI agents for work. > - The runner package is useful only when the application can start, observe, and recover a native Codex run safely. > - Existing direct adapters must keep their current execution and finalization paths. > - The application boundary therefore needs additive persistence, authorization, coordination, and recovery behind an explicit experimental adapter. > - This pull request adds that Codex-only boundary without activating generalized providers, remote environments, or the later task/SDK surfaces. ## Linked Issues or Issue Description **Subsystem affected** Shared contracts, database persistence, adapter utilities, server native-runtime services, and the experimental Paperclip Runner adapter. **Problem or motivation** The already-landed runner package has a qualified Codex path, but the application needs durable native-run state, guarded runtime selection, authenticated coordination, tool security, finalization, and recovery before the experimental adapter can be exercised safely. **Proposed solution** Add a Codex-only `paperclip_runner` application path behind the existing default-off native-runner setting. Bind native state and coordination to company/run identity, preserve persisted-run recovery, and leave every direct adapter on its existing legacy execution path. **Alternatives considered** The earlier stack boundary introduced a generalized executor and remote-environment lifecycle here. That made this PR depend on implementations in higher PRs and changed reusable sandbox behavior globally. Those pieces are now deferred together to #12592. **Roadmap alignment** ROADMAP.md does not list a conflicting native-runner integration project. This change adds the application boundary for the existing Runner architecture. ## What Changed - Added native run/result/finalization/provider-trace persistence, shared validators, and idempotent migration/replay coverage. - Added guarded Codex-only runtime selection, authenticated PRP coordination, recovery, finalization, and interaction services. - Added run/company-bound tool-gateway authorization, credential redaction, SSRF protections, and replay-safe behavior. - Added the explicit `paperclip_runner` adapter behind the default-off rollout setting. - Preserved legacy answered-question wake projection and direct-adapter execution/finalization paths. - Hardened cancellation so only owned in-memory child processes are signaled; persisted recycled PIDs/process groups are never trusted. - Retained the narrow Claude ACPX isolated-context security follow-up discovered after #12590. - Deferred the generalized executor, provider ingress, remote lifecycle, SDK/lab/eval work, release-process changes, and lockfile. ## Verification - Changed-file delta against `master`: 133 files. - GitHub Actions is the authoritative verification environment for this PR. - Full CI, security, and Greptile review will run on this lowest unmerged stack PR. - Local tests/build/typecheck were not run because this checkout is resource constrained. - Static diff/reference checks pass, and `pnpm-lock.yaml` is unchanged. ## Risks - This touches central heartbeat and agent-route code, so legacy compatibility is the primary risk. - Runtime selection remains Codex-only and explicit; direct Codex, Claude, OpenCode, process, HTTP, and plugin adapters remain on their existing paths. - Fresh native starts fail closed while the rollout flag is off; persisted native records remain readable and recoverable. - Cancellation, company/run binding, tool calls, status decisions, and completion writes are guarded or replay-safe. > For core feature work, check [ROADMAP.md](ROADMAP.md) first and discuss it in #dev before opening the PR. Feature PRs that overlap with planned core work may need to be redirected. ## Model Used OpenAI Codex, GPT-5.6, with repository tools, code execution, and parallel agent review. ## Checklist - [x] I have included a thinking path that traces from project context to this change - [x] I have specified the model used (with version and capability details) - [x] I have checked ROADMAP.md and confirmed this PR does not duplicate planned core work - [x] I have searched GitHub for duplicate or related PRs and linked them above - [x] I have either linked existing issues or described the issue in-PR following the relevant issue template - [x] I have not referenced internal or instance-local Paperclip issues or links - [x] My branch name describes the change and contains no internal Paperclip ticket id - [ ] I have run tests locally and they pass — GitHub Actions is authoritative for this resource-constrained checkout - [x] I have added or updated tests where applicable - [x] I have updated relevant documentation to reflect my changes - [x] I have considered and documented risks above - [ ] All Paperclip CI and security gates are green - [ ] Greptile is 5/5 with no open actionable findings - [x] I will address all Greptile and reviewer comments before merge ## Stack - Position: 3 of 5 overall; lowest of 3 currently unmerged - Base: `master` - Previous: [#12590](https://github.com/paperclipai/paperclip/pull/12590), qualified Claude ACPX runtime — merged - Next: [#12592](https://github.com/paperclipai/paperclip/pull/12592), generalized Codex executor, task experience, and developer SDKs --------- Co-authored-by: Dev Agent <dev@paperclip.ing>	2026-08-31 14:38:38 -05:00
Dotta	7a3abb88a0	feat(runner): authorize server Codex tools (#12385) ... ## Thinking Path > - Paperclip is the open source app people use to manage AI agents for work. > - The hidden native coordinator already computes a run-scoped semantic tool projection. > - The durable Codex backend now accepts and enforces that projection. > - The server did not include the projection in its `run.prepare` command. > - Codex therefore received no production semantic tools even when the server authorized them. > - This pull request adds the deterministic wire projection and sends it to runnerd. > - The benefit is one fail-closed authorization catalog from the server through Codex. ## Linked Issues or Issue Description Refs #12384 **What existing behavior does this improve?** This improves the existing flagged Paperclip Runner Codex path. **Current behavior** The server creates a run-scoped list of authorized read tools. It does not pass that list to runnerd, so the production Codex session starts with no tools. **Proposed behavior** The server maps the authorized definitions to the versioned runner contract. It computes a cross-language catalog digest. It includes that immutable contract in `run.prepare`. **Reason and benefit** Runnerd and the server now enforce the same catalog identity. Unknown, duplicate, changed, or malformed tool contracts fail before Codex can use them. **Breaking changes** None. Direct adapters are unchanged. A native run with an empty server projection still starts with no dynamic tools. ## What Changed - Add a deterministic semantic-definition to runner-authorization projection. - Match the Rust canonical digest with a shared test vector. - Include the server coordinator projection in the native Codex `run.prepare` command. - Extend the native Codex vertical slice to require and execute a semantic tool. - Verify the production prepare payload in a host-independent server test. ## Verification - `pnpm --filter @paperclipai/paperclip-runner test:typescript` (354 tests pass) - `pnpm --filter @paperclipai/server exec vitest run src/services/native-runtime/native-codex-runner.test.ts` - `pnpm --filter @paperclipai/server typecheck` - `pnpm -r typecheck` - `pnpm build` - The embedded-Postgres vertical slice is present for CI. This local host reports that embedded Postgres is unavailable, so Vitest skips that host-dependent test locally. - Confirmed that the PR changes 7 files against `runner-codex-durable-tools`. - Confirmed that `pnpm-lock.yaml` is unchanged. ## Risks The main risk is a catalog digest mismatch between TypeScript and Rust. Both implementations use canonical JSON. They share the same fixed digest vector. Runnerd also recomputes the digest and rejects a mismatch. The rollout flag and the existing native runtime selection rules remain unchanged. ## Model Used OpenAI Codex with GPT-5 and repository tool use. ## Checklist - [x] I have included a thinking path that traces from project context to this change - [x] I have specified the model used (with version and capability details) - [x] I have checked ROADMAP.md and confirmed this PR does not duplicate planned core work - [x] I have searched GitHub for duplicate or related PRs and linked them above - [x] I have either (a) linked existing issues with `Fixes: #` / `Closes #` / `Refs #` OR (b) described the issue in-PR following the relevant issue template - [x] I have not referenced internal/instance-local Paperclip issues or links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip` URLs) - [x] My branch name describes the change (e.g. `docs/...`, `fix/...`) and contains no internal Paperclip ticket id or instance-derived details - [x] I have run tests locally and they pass - [x] I have added or updated tests where applicable - [x] I have updated relevant documentation to reflect my changes - [x] I have considered and documented any risks above - [ ] All Paperclip CI gates are green - [ ] Greptile is 5/5 with no open P2s, recommendations, or follow-ups - [x] I will address all Greptile and reviewer comments before requesting merge	2026-08-30 11:43:34 -05:00
Dotta	bc9ba7cd26	feat(runner): project native runs into task threads (#12321) ... ## Thinking Path > - Paperclip is the open source app people use to manage AI agents for work. > - The experimental Paperclip Runner can execute a guarded Codex run and persist provider-neutral events. > - The task page still reads direct-adapter transcripts and cannot present those native events. > - Structured runner questions must also use the existing task interaction experience. > - Runtime selection must use the persisted run mode, not an adapter name or a current feature flag. > - This pull request projects native events and questions into the existing task thread. > - Direct adapters keep their existing transcript, composer, interaction, and finalization paths. > - The benefit is a complete native Codex task thread without a behavior change for existing adapters. ## Linked Issues or Issue Description Refs #12202. This pull request replaces that stale implementation on current `master`. **What happened?** The server persists native runner events and structured input requests. The task page only consumes direct-adapter transcripts. A native run therefore cannot present a complete transcript, usage, or question flow through the normal task experience. **Expected behavior** Native runs project persisted provider-neutral events into the existing task thread. Native structured questions use the existing interaction card. Direct adapters retain their current behavior. **Steps to reproduce** 1. Enable the experimental runner. 2. Start a native Codex run that emits progress, usage, a structured question, and a final reply. 3. Open the task page. 4. Observe that the direct-adapter transcript path cannot project the native event records. **Paperclip version or commit** `master` at `67f9867bc`. ## What Changed - Add the canonical structured-question validator and shared contract exports. - Materialize native input requests as existing task interactions. - Validate native answers and deliver them through the durable question-response receipt. - Resume the original PRP request with an idempotent `request.resolve` command. - Project native messages, tool activity, cumulative usage, and final replies into the existing transcript model. - Propagate persisted `runtimeMode` to the task page and select native handling only for `runtimeMode: "native"`. - Expire pending interactions through the shared issue service on every terminal transition, including decisions, stalled reviews, tree control, and pipeline retry cleanup. - Queue native run cancellation while a transaction is open and execute it only after the owning transaction commits. - Keep nonterminal and non-runner issue paths on their existing service call shapes and behavior. ## Verification - `pnpm --filter @paperclipai/server typecheck` — passed, including the Rust runner release build and protocol/catalog drift gates. - Focused native-thread and lifecycle suites — 18 files and 481 tests passed during review. - `issue-execution-policy-routes.test.ts` — 19/19 passed after the final transactional-queue expectation update. - `issue-agent-mutation-ownership-routes.test.ts` — 87/87 passed in the final isolated compatibility rerun. - GitHub Actions — policy, build, canary, typecheck/release registry, 5 serialized server shards, 8 general-test shards, 3 browser shards, and both aggregate gates passed on `7793f3193`. - Security — Snyk, Socket Project Report, Socket PR Alerts, and Superagent passed. - Greptile — 5/5 on `7793f3193`; all actionable review threads resolved. - `git diff --check` — passed. - Diff against `master`: 44 files. ## Compatibility Boundary - Native transcript polling only runs when the persisted run reports `runtimeMode: "native"`. - Missing or legacy runtime modes continue through `useLiveRunTranscripts`. - Legacy questions keep the existing optional free-text choice. - Native closed select sets can suppress that legacy fallback. - Terminal cleanup uses the same issue service for native and legacy interactions; only a bound native question schedules a native run cancellation. - Native cancellation happens after transaction commit, so failed or rolled-back writes do not cancel a still-valid run. - The durable delivery service checks the original native request before it considers a continuation run. - This pull request adds no migration, dependency, workflow, manifest, or lockfile change. ## Risks The main risk is routing a direct-adapter task through native handling or changing terminal issue behavior. The implementation selects the native path only from persisted runtime facts, retains the existing nonterminal call shape, and schedules native cancellation only for a validated bound native question after commit. Focused and repository-wide tests cover both paths. Native requests remain bound to the company, issue, run, and agent; answers are validated, durable, and idempotent across reconnects. ## Model Used OpenAI Codex, GPT-5 family. The client does not expose the exact deployment ID or context window. Agentic reasoning, tool use, and code execution were enabled. ## Checklist - [x] I have included a thinking path that traces from project context to this change - [x] I have specified the model used (with version and capability details) - [x] I have checked ROADMAP.md and confirmed this PR does not duplicate planned core work - [x] I have searched GitHub for duplicate or related PRs and linked them above - [x] I have either (a) linked existing issues with `Fixes: #` / `Closes #` / `Refs #` OR (b) described the issue in-PR following the relevant issue template - [x] I have not referenced internal/instance-local Paperclip issues or links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip` URLs) - [x] My branch name describes the change and contains no internal Paperclip ticket id or instance-derived details - [x] I have run the affected local tests and they pass - [x] I have added or updated tests where applicable - [x] I have updated the compatibility notes for this change - [x] I have considered and documented risks above - [x] All Paperclip CI gates are green - [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups - [x] I addressed all Greptile and reviewer comments before requesting merge	2026-08-29 19:26:20 -05:00
Dotta	67f9867bc6	fix(interactions): deliver question answers durably (#12307) ... ## Thinking Path > - Paperclip is the open source app people use to manage AI agents for work. > - Agents can pause a task and ask the user structured questions. > - The answer is durable in the issue interaction, but delivery to the next run is not durable. > - A process restart can therefore leave an answered interaction without a continuation attempt. > - Native runners also need a provider-neutral question contract before the task page can consume native events safely. > - This pull request adds a content-free delivery outbox and an optional native steering seam. > - Direct adapters keep their existing heartbeat continuation path. > - The benefit is reliable answer delivery without changing runtime selection or task-page behavior. ## Linked Issues or Issue Description Refs #12202. This pull request replaces the question-delivery foundation from that stale task-thread pull request. The task-thread projection will follow in a smaller pull request. **What happened?** Question answers were stored in the issue interaction. The server then made one in-memory continuation wake. A server stop between those operations could leave the answer stored but not delivered. The combined native task-thread pull request also made this behavior hard to review separately from UI changes. **Expected behavior** The answer and its delivery receipt must commit in one transaction. The server must retry pending receipts after a restart. Existing direct adapters must keep the current wake path. A native runtime may use the optional steering seam, but this pull request does not enable native steering in production. **Steps to reproduce** 1. Create an `ask_user_questions` interaction. 2. Answer the interaction. 3. Stop the server before the continuation wake completes. 4. Start the server again. 5. On current master, no durable record tells the server to retry the answer delivery. **Paperclip version or commit** Current `master` at `4d82f5eae`. ## What Changed - Add the `issue_question_response_deliveries` table and migration. - Store only routing state, a correlation ID, and a payload digest in the delivery row. The answer remains in the existing interaction result. - Commit an answered interaction and its pending delivery row in one transaction. - Add bounded claims, retry recovery, cumulative terminal state, and content-free activity records. - Keep every built-in direct adapter and external adapter on the existing heartbeat wake path. - Add an optional native steering seam. No production caller supplies that seam in this pull request. - Retain the provider-neutral `paperclip.question_set.v1` presentation on recovered interactions. - Run delivery immediately after an answer and sweep pending rows at startup and on the existing server interval. - Add focused database, service, route, startup, adapter-matrix, digest, and duplicate-delivery tests. ## Compatibility Boundary - This pull request does not change adapter selection. - This pull request does not start runnerd. - This pull request does not create native run records. - Direct adapters never call the native steering seam. - The existing interaction result stays authoritative for answer content. - The migration is additive and does not rewrite existing rows. - This pull request has no UI, dependency, workflow, package-manager, or lockfile changes. - The diff has 19 files. ## Verification - `pnpm exec vitest run server/src/__tests__/question-response-delivery.test.ts server/src/services/issue-thread-interactions.test.ts server/src/__tests__/issue-thread-interaction-routes.test.ts server/src/__tests__/server-startup-feedback-export.test.ts` — 4 files and 120 tests passed. - `pnpm -r typecheck` — passed for all applicable workspaces. This includes Cargo format and check, protocol drift checks, and migration safety. - `pnpm build` — passed. This includes the Rust release binary, server build, and UI production build. - `git diff --check` — passed. - Secret patterns were not present in the changed text files. - The repository token gates currently report violations from unchanged files on `master`. This pull request does not change those files. ## Risks The main risk is routing a direct-adapter answer into a native session. The service checks the persisted runtime mode, and the adapter matrix proves that all direct adapters use only the existing wake path. The new table is additive. It has foreign keys, unique correlation constraints, bounded attempts, and status checks. Activity records omit question and answer content. ## Model Used OpenAI Codex, GPT-5 family. The client does not expose the exact deployment ID or context window. Agentic reasoning, tool use, and code execution were enabled. ## Checklist - [x] I have included a thinking path that traces from project context to this change - [x] I have specified the model used (with version and capability details) - [x] I have checked ROADMAP.md and confirmed this PR does not duplicate planned core work - [x] I have searched GitHub for duplicate or related PRs and linked them above - [x] I have either (a) linked existing issues with `Fixes:` / `Closes:` / `Refs:` OR (b) described the issue in-PR following the relevant issue template - [x] I have not referenced internal or instance-local Paperclip issues or links - [x] My branch name describes the change and contains no internal Paperclip ticket ID or instance-derived details - [x] I have run the affected tests locally and they pass - [x] I have added or updated tests where applicable - [x] I have documented the new contracts and compatibility boundary - [x] I have considered and documented compatibility and security risks above - [ ] All Paperclip CI gates are green - [ ] Greptile is 5/5 with no open P2s, recommendations, or follow-ups - [x] I will address all Greptile and reviewer comments before requesting merge	2026-08-27 12:12:21 -05:00
Dotta	397de98193	feat(runner): add flagged Codex execution adapter (#12188) ... ## Thinking Path > - Paperclip is the open source app people use to manage AI agents for work. > - The Paperclip Runner now has protocol, provider, tool, package, persistence, and hidden server boundaries. > - The server still cannot select that path for a real agent heartbeat. > - A new runtime must not change any existing direct adapter. > - An experimental runtime must fail closed when its rollout flag is off. > - This pull request adds one guarded Codex vertical slice through runnerd. > - The benefit is a production-built runner path that users cannot start by default. ## Linked Issues or Issue Description Refs #11962 Refs #12111 Refs #12169 Refs #12176 **Subsystem affected** Cross-cutting. The change affects the runner package, server orchestration, shared settings, and adapter configuration UI. **Problem or motivation** The hidden PRP coordinator cannot execute a real heartbeat. The application also needs an explicit rollout boundary before it can expose the experimental runner. Existing direct adapters must keep their current execution and finalization behavior. **Proposed solution** Add `paperclip_runner` as a Codex-only adapter behind the default-off `enableNativeRunner` instance flag. Select the native runtime only for that adapter. Persist the run binding before runnerd starts. Wait for the durable PRP result and terminal event. Resume the real Codex provider thread on later heartbeats. Keep persisted native runs readable and recoverable after the flag changes. **Alternatives considered** The server could route `codex_local` through runnerd. That option would change an existing adapter and weaken rollback safety. The server could expose all providers now. That option would add unreviewed provider behavior. The build could depend on a prebuilt runner binary. That option would make source builds architecture-dependent and difficult to verify. **Roadmap alignment** This work supports the shipped enforced-outcomes, governed-tool, and self-healing-run milestones. It does not add a new roadmap surface. It is the guarded execution step after the merged hidden runner boundaries. **Additional context** This is the next replacement for the closed large runner pull request. Task-thread presentation remains a separate follow-up so this change can preserve the current direct-adapter UI. ## What Changed - Add `paperclip_runner` as an explicit Codex-only adapter. - Add the default-off `enableNativeRunner` instance flag. - Reject fresh create, hire, import, switch, and execution requests while the flag is off. - Allow edits to persisted runner agents while the flag is off. - Recover an already persisted native run even after the flag is disabled. - Keep every built-in direct adapter on its existing runtime path. - Persist an immutable native run binding and revisioned completion contract before runnerd starts. - Execute server to PRP to runnerd to Codex to server through the hidden coordinator. - Validate the durable result against the terminal event and exact completion criteria before finalization. - Preserve the Codex provider thread ID and use `thread/resume` on the next heartbeat. - Strip unsupported Codex configuration fields from the experimental adapter. - Build a target-native release runner binary from source and vendor it into the server distribution. - Install Rust only in the Docker build stage. Do not add a workflow or lockfile change. - Stop the runner process group on completion, cancellation, and forced shutdown. ## Verification - Run `pnpm --filter @paperclipai/paperclip-runner check:all`. All 69 TypeScript tests and 58 Rust tests pass. Protocol, conformance, replay, formatting, and generated-file checks pass. - Run the 12 focused adapter, settings, runtime-selection, coordinator, direct-isolation, and real Codex integration test files. All 186 tests pass. - The real integration test uses PostgreSQL, HTTP, WebSocket, runnerd, and a fake Codex app server. It proves one `thread/start` followed by one `thread/resume`. - Run `pnpm -r typecheck`. - Run `pnpm build`. - Run `pnpm check:token-gates`. - Build the Docker `build` target from a clean context. Confirm that the server distribution contains an executable `paperclip-runnerd` built with Debian Rust 1.85. - Start the server through the source-mode tsx entry point with the package `dist` directory absent. Confirm the vendor shim resolves source exports and the server boots. - Run `pnpm test:run` twice. On this macOS host, 405 files pass and 1 file skips. Eight untouched workspace and loopback tests fail because macOS resolves `/tmp` and `/var` through `/private` and because PID-derived test ports exceed 65535. Linux CI must pass the full suite. - Confirm that the diff contains 52 files. Confirm that it contains no `.github` or `pnpm-lock.yaml` change. ## Risks - The feature flag is off by default. A fresh native start fails with a stable error while the flag is off. - A persisted native run remains recoverable after the flag changes. This prevents rollout changes from corrupting recorded work. - Only local Codex execution is accepted. Other providers and remote work modes fail closed. - Existing direct adapters do not start runnerd, create native rows, use native status arbitration, or enter native finalization. - The runner receives its one-use bootstrap ticket through the child environment. The server does not put the ticket in command arguments or logs. - The server validates the company, task, agent, run, runner, session, completion contract, result, and terminal binding before it accepts completion. - The build compiles a target-native Rust binary. Cross-platform release packaging remains a later concern. Source builds and Docker builds compile for their current target. - Docker needs enough build memory for the existing server TypeScript compile. The Docker build stage sets a 4 GB V8 heap limit. > For core feature work, check [`ROADMAP.md`](ROADMAP.md) first and discuss it in `#dev` before opening the PR. Feature PRs that overlap with planned core work may need to be redirected — check the roadmap first. See `CONTRIBUTING.md`. ## Model Used - OpenAI Codex with GPT-5. The exact deployment ID and context-window size are not exposed. The model used agentic reasoning, repository tools, code execution, and test execution. ## Checklist - [x] I have included a thinking path that traces from project context to this change - [x] I have specified the model used (with version and capability details) - [x] I have checked ROADMAP.md and confirmed this PR does not duplicate planned core work - [x] I have searched GitHub for duplicate or related PRs and linked them above - [x] I have either (a) linked existing issues with `Fixes: #` / `Closes #` / `Refs #` OR (b) described the issue in-PR following the relevant issue template - [x] I have not referenced internal/instance-local Paperclip issues or links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip` URLs) - [x] My branch name describes the change (e.g. `docs/...`, `fix/...`) and contains no internal Paperclip ticket id or instance-derived details - [x] I have run tests locally and applicable tests pass - [x] I have added or updated tests where applicable - [x] I have updated relevant documentation to reflect my changes - [x] I have considered and documented any risks above - [x] All Paperclip CI gates are green - [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups - [x] I will address all Greptile and reviewer comments before requesting merge	2026-08-25 16:03:41 -05:00
Dotta	9964b034bb	feat(runner): add hidden server PRP coordinator (#12176) ... ## Thinking Path > - Paperclip is the open source app people use to manage AI agents for work. > - The Paperclip Runner needs a narrow server trust boundary before an adapter can start it. > - The package has durable runner transport, but the server does not host or authorize that transport. > - Native persistence exists, but no writer connects PRP events to those records. > - A direct adapter must not enter this path by accident. > - This pull request adds a hidden, run-bound PRP server coordinator. > - The benefit is a recoverable server boundary that remains unavailable to normal execution. ## Linked Issues or Issue Description Refs #11962 Refs #12129 Refs #12169 **Subsystem affected** Cross-cutting. The change affects the runner package and server orchestration. **Problem or motivation** The server cannot authenticate runnerd, commit PRP events before ACK, authorize semantic tools, or enter native finalization from a durable runner result. The application must have this hidden boundary before a guarded adapter can use the runner. **Proposed solution** Add an authenticated PRP WebSocket authority and register it only for one exact persisted native Codex run. Bind each connection and event to the company, issue, agent, run, runner, session, turn, item, and verified runner identity. Commit each event before its cumulative ACK. Project only authorized same-task read tools. Rebuild the accepted result and finalization record from durable result and terminal events. **Alternatives considered** The server could expose a broad runner API key or route semantic calls through existing adapter endpoints. Those options grant too much authority and weaken replay recovery. The server could also add the user-facing adapter in this pull request. That option would mix rollout selection with the transport trust boundary and make legacy compatibility harder to review. **Roadmap alignment** This work supports the shipped enforced-outcomes, governed-tool, and self-healing-run milestones. It does not add a new roadmap surface. ## What Changed - Add the durable PRP server authority with one-use bootstrap tickets, reconnect leases, encrypted frames, bounded state, cumulative ACKs, and idempotent commands. - Add `/api/runner/v1/connect/:runId`. Derive its `ws://` or `wss://` URL from the configured Paperclip API URL. - Register one authority only after the coordinator verifies the complete native Codex run binding. - Commit validated PRP events to `heartbeat_run_events` before ACK. Reject source gaps and conflicting replays. - Rebuild accepted results and finalization records from durable result and terminal events. Enforce finalization owner leases and retry times. - Project five same-task read operations. Recheck run, agent, task, and company authority for each call. - Keep the route hidden. No adapter selects this coordinator, and no code starts runnerd. - Vendor the compiled runner TypeScript runtime into the server package while keeping the workspace package development-only for the server. - Document the package, database writer, run-log payload, and credential exclusions. ## Verification - Run `pnpm --filter @paperclipai/paperclip-runner check:all`. All TypeScript protocol checks and 69 Vitest tests pass, including commit-before-ACK crash recovery. All 43 Rust unit tests and 13 Rust integration tests pass. Conformance and replay parity pass. - Run the focused server WebSocket, coordinator, package-build, and startup-wiring suites. All 26 tests pass, including a clean-checkout reproduction with the runner `dist` directory absent. - Run `pnpm -r typecheck`. - Run `pnpm test:run`. - Run `pnpm build`. - Confirm that the diff contains 19 files. Confirm that it contains no workflow or `pnpm-lock.yaml` change. ## Risks - The server installs the WebSocket route at startup. An unregistered or malformed run path fails closed and creates no native record. - Bootstrap tickets are one use. The private state directory uses mode `0700`, and the state file uses mode `0600`. The file stores derived authentication verifiers and never stores raw tickets or lease tokens. - The journal has explicit frame, command, event-window, and file-size bounds. A bound violation closes the runner connection or rejects the command. - A runner event reaches the database before its ACK. A crash between event commit and ACK causes a byte-equivalent replay, not a second logical effect. - The coordinator accepts only an existing queued or running native Codex row with exact company, task, agent, runner, session, and completion-contract ownership. - Existing direct adapters do not call this service. They keep their current execution, transcript, result, and finalization paths. - The server has no production dependency on the private runner package. Its build copies the compiled runtime into `server/dist`; the workspace link is development-only. This adds no external package and does not change the lockfile. > For core feature work, check [`ROADMAP.md`](ROADMAP.md) first and discuss it in `#dev` before opening the PR. Feature PRs that overlap with planned core work may need to be redirected — check the roadmap first. See `CONTRIBUTING.md`. ## Model Used - OpenAI Codex with GPT-5. The exact deployment ID and context-window size are not exposed. The model used agentic reasoning, repository tools, code execution, and test execution. ## Checklist - [x] I have included a thinking path that traces from project context to this change - [x] I have specified the model used (with version and capability details) - [x] I have checked ROADMAP.md and confirmed this PR does not duplicate planned core work - [x] I have searched GitHub for duplicate or related PRs and linked them above - [x] I have either (a) linked existing issues with `Fixes: #` / `Closes #` / `Refs #` OR (b) described the issue in-PR following the relevant issue template - [x] I have not referenced internal/instance-local Paperclip issues or links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip` URLs) - [x] My branch name describes the change (e.g. `docs/...`, `fix/...`) and contains no internal Paperclip ticket id or instance-derived details - [x] I have run tests locally and they pass - [x] I have added or updated tests where applicable - [x] I have updated relevant documentation to reflect my changes - [x] I have considered and documented any risks above - [x] All Paperclip CI gates are green - [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups - [x] I will address all Greptile and reviewer comments before requesting merge	2026-08-25 14:17:14 -05:00