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5da382fd59 |
feat(skills): require explicit merge modes (#10978)
## Thinking Path > - Paperclip is the open source app people use to manage AI agents for work > - Agents can select company skills and synchronize them to adapter runtimes > - The skill sync API replaced the complete selection without an explicit destructive choice > - Company package import also replaced conflicting skills by default > - These defaults could remove operator edits during setup and import reruns > - This pull request adds explicit assignment merge modes and safe package conflict handling > - The benefit is that reruns preserve operator work unless the caller explicitly requests replacement ## Linked Issues or Issue Description **What existing behavior does this improve?** This change improves agent skill synchronization and company package import. **Subsystem affected** This is a cross-cutting change across the shared contracts, server, CLI, and UI. **Current behavior** Agent skill synchronization replaces the full desired skill set from a modeless request. Package import replaces a conflicting skill when the caller does not select a conflict mode. **Proposed behavior** Agent skill synchronization requires `add`, `remove`, or `replace`. Package import skips conflicts by default. Each imported skill reports whether it was created, renamed, replaced, or skipped. **Reason and benefit** Setup and import reruns must preserve operator edits by default. Explicit destructive modes make data loss less likely and make each outcome inspectable. **Breaking changes** Callers of the agent skill sync API must now send `mode`. Callers that need the former behavior must send `replace`. Package import now uses `skip` when `onConflict` is absent. ## What Changed - Added required `add`, `remove`, and `replace` modes to the shared agent skill sync contract. - Added actionable `422` validation for missing or invalid modes. - Updated first-party UI and CLI callers with explicit modes. - Changed package skill conflict handling to use `skip` by default. - Kept plugin-owned and built-in stock skill imports on explicit `replace`. - Added created, renamed, replaced, and skipped results to company imports. - Added regression coverage for merge modes and package conflict outcomes. ## Verification - `pnpm check:token-gates` - `pnpm -r typecheck` - `pnpm build` - `pnpm test:run:serialized` (128 suites passed) - `pnpm --filter @paperclipai/skills-catalog test` (20 tests passed) - Focused agent skill route, company skill service, portability, CLI, and UI tests passed. - GitHub CI passed build, typecheck, canary, all general and serialized test shards, all browser shards, policy, security, and final verification on commit `2cfbb3e4c5`. - Greptile reviewed the latest commit at 5/5 with zero unresolved threads. ## Risks - This change intentionally rejects modeless agent skill sync requests. - The safe package default can leave an existing skill unchanged where the old default overwrote it. - All first-party callers now select a mode. Regression tests cover each outcome. > For core feature work, check [`ROADMAP.md`](ROADMAP.md) first and discuss it in `#dev` before opening the PR. Feature PRs that overlap with planned core work may need to be redirected — check the roadmap first. See `CONTRIBUTING.md`. ## Model Used - OpenAI `gpt-5.6-sol` through Codex. The runtime used agentic reasoning, tool use, code execution, and repository editing. The runtime did not expose the context window size. ## Checklist - [x] I have included a thinking path that traces from project context to this change - [x] I have specified the model used (with version and capability details) - [x] I have checked ROADMAP.md and confirmed this PR does not duplicate planned core work - [x] I have searched GitHub for duplicate or related PRs and linked them above - [x] I have either (a) linked existing issues with `Fixes: #` / `Closes #` / `Refs #` OR (b) described the issue in-PR following the relevant issue template - [x] I have not referenced internal/instance-local Paperclip issues or links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip` URLs) - [x] My branch name describes the change (e.g. `docs/...`, `fix/...`) and contains no internal Paperclip ticket id or instance-derived details - [x] I have run tests locally and they pass - [x] I have added or updated tests where applicable - [x] I have updated relevant documentation to reflect my changes - [x] I have considered and documented any risks above - [x] All Paperclip CI gates are green - [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups - [x] I will address all Greptile and reviewer comments before requesting merge --------- Co-authored-by: Paperclip <noreply@paperclip.ing> |
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20aea356cc |
refactor(deps-dev): bump vitest from 3.2.4 to 4.1.8 (#7581)
## Thinking Path > - Paperclip orchestrates AI agents for zero-human companies > - Test infrastructure across server, ui, packages/* runs on Vitest > - Dependabot opened a narrow bump (3.2.4 → 3.2.6), but the wider workspace is on 3.2.4 and the major-version bridge to v4 needs a coordinated change set across configs and tests > - Staying on 3.x indefinitely leaves us behind on Vitest 4 (perf, pool, and config improvements) and forces repeated patch-only dependabot churn > - This pull request upgrades Vitest to 4.1.8 across the workspace, updates `server/vitest.config.ts` and `scripts/run-vitest-stable.mjs` for the new API, and adjusts two UI tests for the new assertion semantics > - The benefit is a single, coherent Vitest 4 upgrade that supersedes #7570 and gets us on the supported major line ## What Changed - Bump `vitest` from `3.2.4` to `4.1.8` across root, `server`, `ui`, and all `packages/*` (including plugin examples and sandbox providers) - Update `server/vitest.config.ts` for Vitest 4 config surface - Update `scripts/run-vitest-stable.mjs` to match the new runner behavior - Adjust `ui/src/components/CommentThread.test.tsx` and `ui/src/components/MarkdownEditor.test.tsx` for Vitest 4 matcher/timing semantics - Refresh `pnpm-lock.yaml` ## Verification - `pnpm install` resolves cleanly with the new lockfile - `pnpm -w -r test` (server, ui, packages) runs under Vitest 4.1.8 ## Risks - Major-version Vitest bump: behavioral changes in pools, fake timers, and matcher strictness can surface flake. Test config and the two UI tests were updated to match v4 semantics; broader test runs should be watched on CI before merge. - Supersedes dependabot PR #7570 (3.2.4 → 3.2.6); that PR should be closed. ## Model Used - Claude (Anthropic) — `claude-opus-4-7`, extended thinking, tool use enabled ## Checklist - [x] I have included a thinking path that traces from project context to this change - [x] I have specified the model used (with version and capability details) - [x] I have checked ROADMAP.md and confirmed this PR does not duplicate planned core work - [ ] I have run tests locally and they pass - [ ] I have added or updated tests where applicable - [ ] If this change affects the UI, I have included before/after screenshots - [ ] I have updated relevant documentation to reflect my changes - [x] I have considered and documented any risks above - [x] I will address all Greptile and reviewer comments before requesting merge Closes #7570 |
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9eac727cf1 |
[codex] Add skills CLI and catalog management (#6782)
## Thinking Path > - Paperclip orchestrates AI agents for zero-human companies through company-scoped control-plane workflows. > - Agents need reusable, inspectable skills that can be installed, reset, audited, exported, and assigned without bespoke local setup. > - The existing skill truth model needed cleanup so bundled skills, optional catalog skills, runtime skills, and adapter-provided skills have clear provenance. > - Operators also need a practical CLI and board UI for discovering and managing company skills. > - This pull request adds the skills CLI, packaged skills catalog, company skills APIs, and catalog-aware board UI. > - The benefit is a more reusable Paperclip company setup where skills are portable, auditable, and easier for operators and agents to manage. ## What Changed - Added `paperclipai skills` CLI commands and coverage for catalog listing, installing, resetting, and inspecting company skills. - Added a packaged `@paperclipai/skills-catalog` workspace with bundled and optional skill content plus validation/build tests. - Added shared company-skill types and validators used across CLI, server, and UI contracts. - Added server catalog APIs/services for company skill catalog operations, reset semantics, audit behavior, and portability provenance. - Updated adapter skill handling so runtime/catalog provenance remains explicit across local adapters. - Added board UI support for browsing and managing catalog-backed company skills. - Updated docs for the skills CLI/catalog flow and the company skills Paperclip skill reference. - Rebased the branch onto current `paperclipai/paperclip:master`; no `pnpm-lock.yaml`, `.github/workflows`, or migration files are included in the final PR diff. ## Verification - Passed: `pnpm run preflight:workspace-links && pnpm exec vitest run cli/src/__tests__/skills.test.ts packages/skills-catalog/src/catalog-builder.test.ts packages/skills-catalog/src/shipped-catalog.test.ts packages/shared/src/validators/company-skill.test.ts packages/adapter-utils/src/server-utils.test.ts packages/plugins/create-paperclip-plugin/src/entrypoints.test.ts server/src/__tests__/company-skills-catalog-service.test.ts server/src/__tests__/company-skills-routes.test.ts server/src/__tests__/company-portability.test.ts`. - Passed: `pnpm exec vitest run server/src/__tests__/workspace-runtime.test.ts -t "default branch|origin/master|symbolic-ref"`. - Attempted: full `server/src/__tests__/workspace-runtime.test.ts`. Four provisioning tests failed while seeding an isolated worktree database from the local Paperclip instance because the local plugin schema dump contains a duplicate-column foreign key (`plugin_content_machine_18a7bc327b.content_case_signals`). The default-branch tests touched by the rebase conflict passed in the focused run above. - Checked final diff: no `pnpm-lock.yaml`, no `.github/workflows`, and no migration-file changes relative to `master`. ## Risks - Medium: this is a broad skills/catalog change touching CLI, server APIs, shared contracts, adapter skill sync, and UI. - Catalog validation and reset semantics need careful reviewer attention because they affect reusable company setup and portability. - No database migrations are included in this PR, so there is no migration ordering/idempotency risk in the final diff. - No lockfile is included by design; dependency resolution will be handled by the repository lockfile workflow. ## Model Used - OpenAI Codex coding agent based on GPT-5, running in Paperclip via the `codex_local` adapter with shell, git, GitHub CLI, and code-editing tool access. Exact hosted model build/context-window metadata is not exposed in this runtime. ## Checklist - [x] I have included a thinking path that traces from project context to this change - [x] I have specified the model used (with version and capability details) - [x] I have checked ROADMAP.md and confirmed this PR does not duplicate planned core work - [x] I have run targeted tests locally and documented the local workspace-runtime seed failure above - [x] I have added or updated tests where applicable - [x] If this change affects the UI, screenshots were intentionally omitted per PAP-10124 instructions; UI behavior is covered by tests and reviewer inspection - [x] I have updated relevant documentation to reflect my changes - [x] I have considered and documented any risks above - [x] I will address all Greptile and reviewer comments before requesting merge --------- Co-authored-by: Paperclip <noreply@paperclip.ing> |