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Author	SHA1	Message	Date
DottaandClaude Opus 5.5	a994a648f1	fix(workspaces): name copy-back failures on the run and end failed save operations (#19187) ... ## Thinking Path > - Paperclip is the open source app people use to manage AI agents for work. > - A native run in a Daytona sandbox saves its workspace after the provider turn. This save is "copy-back". > - On staging, about 20 runs kept a saved result, but copy-back failed three times. The issues became blocked with `native_workspace_sync_out_retry_exhausted`. > - #19152 added a redacted cause for a sandbox command that exits with an error. Three gaps stayed open: a provider that refuses the command still gives a bare code, the run does not show the cause, and the failed save operation stays "running". > - The first failure also had the wrong name. The runner kept the result but did not prove a durable suspension. The executor reports this as `native_session_lease_lost`, and the workspace operation shows only that text. > - This pull request names each of these failures with closed, redacted labels. It also ends a failed save operation as "failed". > - The benefit is that operators can see why copy-back failed and which save is still active. Retries and saved results do not change. ## Linked Issues or Issue Description Refs #19152, #19145. These are the earlier copy-back diagnostics and retry-scheduling repairs. This PR does not duplicate them. **What happened?** A native task ran in a Daytona sandbox and its result was accepted. The run then failed with `native_workspace_sync_out_retry_exhausted`. The run had no error text. The automatic copy-back retries each failed in under one second, with only `workspace_sync_out_failed`. The final `remote_workspace_snapshot` operation stayed "running" after the retries stopped. The first `workspace_finalize` operation showed only `native_session_lease_lost`. The run log showed that the runner shutdown timed out before durable suspension. The lease was not lost. **Steps to reproduce** 1. Run a native task in a Daytona sandbox until its result is accepted. 2. Make the sandbox provider refuse the copy-back command (for example, a lease that is no longer active), so that no exit status comes back. 3. Let the automatic retries stop. Then read the run and its workspace operations. **Expected behavior** The run, the coordinator, and the failed operations name a redacted cause. The failed save operation is "failed" with a finish time. **Actual behavior** The run has no cause. The save operation stays "running". A provider refusal keeps only the bare `workspace_sync_out_failed` code. ## What Changed - `remote-workspace-transport.ts`: the provider can throw instead of returning an exit status for the copy-back helper, the capture, or the archive download. `remoteWorkspaceFailureCause` then returns `remote_workspace_operation_failed: operation=<op> transport=<label>[ code=<ERRNO>]`. The label is from a closed list (for example `sandbox_lease_inactive`, `permission_denied`, `sandbox_not_running`, `transport_timeout`, `transport_closed`, `daytona_sandbox_not_found`, `provider_error`). Provider text is never copied into the cause. The thrown error does not change, so preparation errors, `classifyNativeWorkspaceFailure`, and other callers keep their contracts. Archive-safety and Git-metadata refusals get no label, because they have their own diagnostics. - `remote-workspaces.ts`: when the last active invocation of a save fails, the save operation becomes "failed" with `exitCode`, `finishedAt`, a redacted `stderrExcerpt`, and `metadata.lastFailure`. A retry of the same boundary sets it to "running" again. A success sets it to "succeeded". After the final save commits, a failed save is retired for export cleanup in the same way as a running save. - `remote-workspace-snapshot-retention.ts`: a failed save that is not retired keeps its snapshot pinned, as it did while it was "running". Its retry can still use an uploaded snapshot. - `native-run-finalizer.ts` and `native-workspace-finalizer.ts`: the redacted cause of each copy-back attempt goes to the coordinator `failureDetail.failureCause` and the run `resultJson.failureCause`. When retries stop, the run error adds `Last cause: <cause>`. The server checks the cause against a fixed grammar again before it writes it. A cause with a path or other text is dropped. - `native-post-result-failure.ts` (new), `native-session-executor.ts`, `runtime-execution.ts`: a failure after an accepted result gets the label `runner_settlement_incomplete` when the runner did not prove a durable suspension. The failed `workspace_finalize` operation records this closed diagnostic as `failureDiagnostic`. The coordinator records it as `native_post_result_failure: category=<label>`. The control code `native_session_lease_lost` and its fencing do not change. ## Verification - Red, before the fix (the new tests run against `master` source): - 4 provider-refusal cases and the archive download failure: no redacted cause was available, so the copy-back recorded only the bare code. - Failed save, with only the transport fix applied: `- "status": "failed"` / `+ "status": "running"`. - Run cause after retries stop: `expected null to be 'remote_workspace_operation_failed: …'`. - Green, after the fix: `cd server && npx vitest run src/services/remote-workspace-transport.test.ts src/services/remote-workspace-save-concurrency.test.ts src/__tests__/native-workspace-finalization-work.test.ts src/services/native-runtime/native-post-result-failure.test.ts src/services/remote-workspaces.integration.test.ts src/services/remote-workspace-snapshot-retention.test.ts` passes. - Safety cases: - The failed save is retried on the same boundary operation, records "succeeded", and keeps the saved file bytes. - `daytona_sandbox_not_found` is still classified as `workspace_sync_out_unrecoverable`. - An archive-safety refusal keeps its exact text. - A forged cause with a path never reaches the run or the coordinator. - A run-level timeout cause (`remote_workspace_operation_timed_out: capture (configured timeout 300000ms)`) reaches the run and the coordinator. - `heartbeat-native-remote-failure-retention.test.ts` passes: a preparation failure keeps its exact run error. - The existing integration tests for retired saves, poisoned reservations, duplicate invocations, and snapshot retention pass. They prove export cleanup and identity protection. - `tsc --noEmit` for `server` reports no errors. - Not done: a live Daytona copy-back. This PR adds diagnostics and corrects the operation state. It does not change when a retry runs. ## Risks - Thrown copy-back errors do not change. Only the recorded cause is new. The `daytona_sandbox_not_found` and archive-safety classifications are tested. - A failed save operation is now "failed" before the final save commits. Retirement, export cleanup, and snapshot pinning now also select these failed rows. They select only rows with `lastFailure` and no retirement receipt. - Privacy: each new cause is a closed label or a server-built code. The server checks it again with an anchored grammar before it writes the run. No sandbox output, path, or message text is stored. - The retry count, the retry delay, and the classification of each failure do not change. No provider turn is added. > For core feature work, check [`ROADMAP.md`](ROADMAP.md) first and discuss it in `#dev` before opening the PR. Feature PRs that overlap with planned core work may need to be redirected — check the roadmap first. See `CONTRIBUTING.md`. ## Model Used - Provider: Anthropic. Model: Claude Opus 5.5 (`claude-opus-5-5`), in the Claude Code agent harness. - Capabilities used: tool use, shell and code execution, repository search, read-only browser reads of staging, and extended reasoning. ## Checklist - [x] I have included a thinking path that traces from project context to this change - [x] I have specified the model used (with version and capability details) - [x] I have checked ROADMAP.md and confirmed this PR does not duplicate planned core work - [x] I have searched GitHub for duplicate or related PRs and linked them above - [x] I have either (a) linked existing issues with `Fixes: #` / `Closes #` / `Refs #` OR (b) described the issue in-PR following the relevant issue template - [x] I have not referenced internal/instance-local Paperclip issues or links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip` URLs) - [x] My branch name describes the change (e.g. `docs/...`, `fix/...`) and contains no internal Paperclip ticket id or instance-derived details - [x] I have run tests locally and they pass - [x] I have added or updated tests where applicable - [x] I have updated relevant documentation to reflect my changes - [x] I have considered and documented any risks above - [ ] All Paperclip CI gates are green - [ ] Greptile is 5/5 with no open P2s, recommendations, or follow-ups - [x] I will address all Greptile and reviewer comments before requesting merge 🤖 Generated with [Claude Code](https://claude.com/claude-code) --------- Co-authored-by: Claude Opus 5.5 <noreply@anthropic.com>	2026-11-04 23:07:42 -06:00
DottaandClaude Opus 5.5	eab672e10a	fix(workspaces): name the failing remote copy-back step without private output (#19152) ... ## Thinking Path > - Paperclip is the open source app people use to manage AI agents for work. > - A native run in a Daytona sandbox saves its workspace after the provider turn. The save is called copy-back. > - Copy-back fails on staging after successful provider turns. Issues become blocked with `retry_exhausted`. > - The recorded cause is only `remote_workspace_operation_failed` or `workspace_sync_out_failed`. Operators cannot see which step failed or why. > - The remote command wrapper drops every unrecognized sandbox failure to the bare code. The finalizer retry keeps only the disk-full cause. > - This pull request records a bounded, redacted cause: the operation, its exit code or signal, and the failing capture stage with structured error fields. > - The benefit is that the next copy-back failure shows its first cause, and sandbox output still cannot leak paths or credentials. ## Linked Issues or Issue Description **What happened?** Native runs on a Daytona sandbox finish their provider turn and accept their result. Then workspace copy-back fails. The first `workspace_finalize` operation records only `remote_workspace_operation_failed`. Each retry records only `workspace_sync_out_failed`. The run has no error text. After the retries stop, the issue is blocked. **Steps to reproduce** 1. Run a native task in a Daytona sandbox. 2. Make the sandbox capture step fail with an error that is not disk-full or a known archive validation error. For example, make Git exit with 128. 3. Read the run's workspace operations. **Expected behavior** The failed operation names the step that failed and a redacted cause. **Actual behavior** The failed operation shows only `remote_workspace_operation_failed` and then `workspace_sync_out_failed`. Refs #19050, #19059, #19061, #19063. These are related Daytona and finalizer repairs. This PR does not duplicate them. ## What Changed - `remote-workspace-snapshot-archive.ts`: add `remoteWorkspaceFailureDetail`. It is self-contained and runs in the sandbox. It reports only fixed keys (`code`, `exit`, `signal`, `syscall`, `killed`, `program=git`, `name`, `reason`). Each value is at most 64 `[A-Za-z0-9_]` characters and comes from structured error properties. It never reports message text, command lines, or paths. The archive child now writes `remote_workspace_archive_failed: <detail>` for an unclassified capture error. - `remote-workspace-transport.ts`: the helper-install and capture scripts write `remote_workspace_capture_failed: stage=helper|archive|publish <detail>`. The server accepts this text only when it matches a strict grammar. Unrecognized failures now throw `RemoteWorkspaceOperationError` with the message `remote_workspace_operation_failed: operation=<op> exit=<n>[ signal=<SIG>][; <validated cause>]`. Existing exact diagnostics (Git operation in progress, full disk, archive validation) do not change. - `native-workspace-finalizer.ts`: a retried remote save records the redacted cause in the operation stderr and in `metadata.workspaceSync.cause`. Other error text still stays off the record. - Tests: new red/green cases. The old privacy tests now assert the anchored redacted form, which still excludes any synthetic private text. ## Verification - Red, before the fix (only the error class existed). 8 tests failed on behavior: - The real Git failure produced `Received: "remote_workspace_operation_failed"`. - The signal-terminated command produced the same bare message. - The forged-cause cases produced the same bare message. - The finalizer retry case lost the cause. - Green, after the fix: `npx vitest run src/services/remote-workspace-transport.test.ts src/services/native-runtime/native-workspace-finalizer-failure.test.ts src/services/remote-workspace-snapshot-archive.test.ts` reported 126 passed. - The new capture test runs the real helper scripts with a controlled `git` that exits 128 and prints a synthetic private path. The error is exactly `remote_workspace_operation_failed: operation=capture exit=1; remote_workspace_capture_failed: stage=archive exit=128 program=git helper_exit=1`. The private path is absent. The workspace files are unchanged. The test passes with split output and with one-shot output. - Forged causes are dropped. These cases are tested: a path in a value, an extra line, an unknown key, and a prefixed text. - Wider sweep: I ran all 63 server test files that touch remote workspaces, copy-back, or finalization. 6381 tests passed. 2 tests failed in `chat-channels.integration.test.ts` and `git-workspace-expiration.test.ts`. These 2 tests also fail with this PR's three source files reverted to `master`. This PR does not cause them. - Typecheck: `tsc` reports no errors in the changed files. Other errors are local, from unbuilt workspace packages. - Not done: I did not run a live Daytona copy-back. This change adds diagnostics. It does not repair the underlying failure. The staging failures can be diagnosed after this PR is deployed. ## Risks - The error message for an unrecognized remote failure changes from the exact bare code to the same code plus validated fields. No production code compares the exact text. Only tests did, and I updated them. - Privacy: the sandbox detail contains only structured error properties. The server re-validates them with an anchored grammar with a length limit and a field limit. A path, a message text, or an unknown key fails the grammar, and the server drops the whole cause. - Retry and classification policy do not change. `classifyNativeWorkspaceFailure` does not read the new text. - This PR does not address two items: the final snapshot operation stays `running` after retries are exhausted, and no disk-retention cause was proven for the ACPX disk-full report. ## Model Used - Claude Opus 5.5 (`claude-opus-5-5`), Anthropic, used through Claude Code with tool use (shell, browser read-only GETs on staging, code execution). ## Checklist - [x] I have included a thinking path that traces from project context to this change - [x] I have specified the model used (with version and capability details) - [x] I have checked ROADMAP.md and confirmed this PR does not duplicate planned core work - [x] I have searched GitHub for duplicate or related PRs and linked them above - [x] I have either (a) linked existing issues with `Fixes: #` / `Closes #` / `Refs #` OR (b) described the issue in-PR following the relevant issue template - [x] I have not referenced internal/instance-local Paperclip issues or links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip` URLs) - [x] My branch name describes the change (e.g. `docs/...`, `fix/...`) and contains no internal Paperclip ticket id or instance-derived details - [x] I have run tests locally and they pass - [x] I have added or updated tests where applicable - [x] I have updated relevant documentation to reflect my changes - [x] I have considered and documented any risks above - [ ] All Paperclip CI gates are green - [ ] Greptile is 5/5 with no open P2s, recommendations, or follow-ups - [x] I will address all Greptile and reviewer comments before requesting merge 🤖 Generated with [Claude Code](https://claude.com/claude-code) Co-authored-by: Claude Opus 5.5 <noreply@anthropic.com>	2026-11-04 21:47:29 -06:00
3 people	17e8bd7735	fix(runner): save native checkpoints when the sandbox disk is full (#18705) ... ## Thinking Path > - Paperclip is the open source app people use to manage AI agents for work > - Native runs on a remote sandbox save two things after each turn: the provider checkpoint and the workspace export > - An agent can fill the sandbox disk during its own work, for example with a package install > - The turn still finishes, but both saves need free sandbox disk, so they fail and the task becomes blocked with no clear reason > - This pull request makes the checkpoint work on a full disk and makes a full disk visible in the export failure > - The benefit is fewer stranded checkpoints, and an operator sees at once why an export failed ## Linked Issues or Issue Description Related: #18715 added the shared-principal response-recovery control synchronized below. #18644 reduced the scratch disk that the workspace capture uses. #18172 added the disk-free streaming fallback to the Daytona directory sync-out. Both were deployed when this failure occurred. Neither changes the checkpoint copy, and neither can help when the disk has no free space. **What happened?** A native agent ran a package install for a large monorepo in a 10 GB Daytona sandbox. `df` in the run showed `10G 10G 4.6M 100%`. The agent committed its work and reported `done`. Then: 1. The provider checkpoint made a filtered copy of the provider directory inside the sandbox (`tar -cf archive; tar -xf archive -C snapshot`) to apply its exclusions. On the full disk, tar failed. The run recorded `runner_remote_checkpoint_snapshot_failed` without the reason, and the partial copy stayed on the disk. 2. Workspace finalization failed three times, and file preservation failed six times. The capture builds its archive inside the sandbox, so each attempt failed. Every failure was recorded as `remote_workspace_operation_failed` / `export_interrupted`, so nothing named the full disk. 3. The task went to `blocked`. The only copy of the commit was in the retained sandbox. **Expected behavior** The checkpoint does not need free sandbox disk when the provider can stream. A workspace export that cannot fit says that the sandbox disk is full. **Steps to reproduce** 1. Run a native agent with a provider whose checkpoint has exclusions (for example ACPX) in a small remote sandbox. 2. In the turn, fill the sandbox disk (for example `pnpm install` of a large repository, or `fallocate` of the free space) and finish the task. 3. The checkpoint fails with `runner_remote_checkpoint_snapshot_failed`, and every workspace export attempt fails with a generic code. **Paperclip version or commit** Observed on `410b0e27015`. This change is based on `5955dd4eb4c`. ## What Changed - Synchronize the shared-principal response-recovery regression with its saved comments and empty final deadline. Cover an in-flight discovery invalidation. Keep every authority lock, exact publication, error, and no-retry assertion. This changes test synchronization only. - `syncRemoteRunnerDirectoryOut`: when the in-sandbox checkpoint copy fails with a full-disk tar diagnostic, remove the partial copy and pass the exclusions to the provider sync-out (`exclude` on the directory mapping). The Daytona sync-out streams the directory without sandbox disk when it cannot write its archive. Other copy failures and timeouts still throw `runner_remote_checkpoint_snapshot_failed`. They now also remove the partial copy. - `remote-workspace-transport.ts`: the helper install and the capture scripts report `remote_workspace_sandbox_disk_full: ...` when Node reports `ENOSPC` or `EDQUOT`, or a Git or tar child reports "No space left on device". `command()` passes only that exact message through, like the existing unfinished-Git-operation message. - `native-workspace-finalizer.ts`: a remote save that fails with that message adds it to the failed operation's stderr. The failure code, the retry budget, and the recovery flow do not change. ## Verification - Current-head infrastructure interruption: the [Build job](https://github.com/paperclipai/paperclip/actions/runs/41637668555/job/125923826158) completed the actual build and production bundle boot, then the runner received a shutdown signal during the clean public Grok npm-install check. GitHub marked that step cancelled. The exact host-stop cause was not retained. One bounded rerun of only the failed Build and dependent `ci / verify` jobs passed on the unchanged head. [Build attempt 2](https://github.com/paperclipai/paperclip/actions/runs/41637668555/job/125931400745) completed successfully, including the clean Grok npm-install check. No product code, assertion or workflow changed for this interruption. - CI failure retained: commit `6c5937fcae` failed [chat shard 1/3](https://github.com/paperclipai/paperclip/actions/runs/41634638570/job/125913957217) because the shared-principal fixture saw zero saved comments after `worker.ready` and zero active work. The other chat child passed. The exact case passed once locally and then 30 times on the same Node 24.22.2 version as CI; those passes alone do not explain the CI interleaving. - Controlled RED/GREEN: invalidate the real database discovery once while its read is in flight. The worker correctly retains a future reconstruction deadline, but the old initial-pass/active-count barrier reproduces the same zero-versus-one comment assertion. Waiting for both saved comments and final `active=0`/`nextWakeAt=null` passes. Six real-PostgreSQL controls pass on final commit `a60e5629e8`, including endpoint independence, source revocation, and external lock failure/recovery. No sleep, timeout increase, weakened assertion, or product scheduling/authorization change was added. - A local server typecheck first lacked the checkout's built Runner declarations. After the declared Runner TypeScript build, the server typecheck passes on `a60e5629e8`. Final-head remote verification is complete: 54 successful checks, 3 expected skips, no failures or pending checks, and successful `ci / verify` and `ci / e2e` aggregates. Greptile is 5/5 on this exact commit with no unresolved review threads. - Merge preparation: rebased onto master `b22ef22d56` and kept both test-import additions. Added the checkpoint fallback and capacity-failure contract to `doc/execution-semantics.md`. On rebased commit `6c5937fcae`, 47 focused checkpoint, transport, finalization and retained warm-projection tests passed across three files. The name filter skipped 1,040 unrelated cases. Map and whitespace checks passed. The final-head CI and Greptile results are recorded above. - `npx vitest run server/src/services/native-runtime/native-session-executor.test.ts server/src/services/native-runtime/native-workspace-finalizer.test.ts server/src/services/remote-workspace-snapshot-archive.test.ts` passes (1,152 tests). - `npx vitest run server/src/services/remote-workspace-transport.test.ts server/src/services/native-runtime/native-workspace-finalizer-failure.test.ts` passes (30 tests). - New tests: - Checkpoint, with real files: a full-disk snapshot leaves a partial copy. The provider then gets the exclusions, the session files are kept, the package caches are left out, and the partial copy is removed. - Checkpoint: a permission failure and a timeout still fail, remove the partial copy, and do not call the sync-out. - Transport: the real capture scripts run with an `ENOSPC` preload, for the helper install and for the archive write. Both report the full-disk message and leave no partial attempt. A message with extra text still collapses to `remote_workspace_operation_failed`. - Finalizer: the operation stderr names the full disk and keeps `workspace_sync_out_failed`. Other failures keep the bare code. - With the source change removed, the 3 checkpoint cases and the 2 transport ENOSPC cases fail. - `npx tsc --noEmit -p server/tsconfig.json` is clean. - Suites that refer to the changed error codes (`explicit-native-continuation`, `native-recovery-notice-work`, `native-run-finalizer-telemetry`, `native-workspace-export-retry`, `remote-workspaces.integration`) pass. In `chat-channels.integration`, 2 cases fail locally on unmodified `master` too (a bundled skill path outside the checkout, and a chat run timing assertion). They are not related to this change. - Manual recovery of the observed task: the retained sandbox was resumed with free space, file preservation was requested again, and the saved workspace contained the agent's commit. ## Risks - The fallback runs only after the snapshot fails with a full-disk diagnostic. The normal path does not change. - Provider exclusions are not anchored to the directory root. In the fallback, a nested entry that has an excluded name (for example a nested `tmp` or `config.toml` in a Codex home) is also left out. The fallback never copies more than the snapshot, so credentials stay out of the checkpoint. - The fallback depends on the provider honoring `exclude`, which the sync protocol requires. The Daytona and Kubernetes providers honor it. - A workspace export on a full disk still fails. This change only names the cause. A full fix needs one of these: free-space reserve for the export, removal of re-creatable caches before the export, or a capture that streams its archive. Each of these changes behavior, so this pull request does not include one. - No migration. ## Model Used - OpenAI Codex, GPT-6 family, assisted with merge preparation, conflict resolution, documentation, test synchronization and verification. The harness does not expose the exact serving model ID or context-window size. - Claude Opus 5.5 (`claude-opus-5-5`), Anthropic, in Claude Code with tool use (shell, file edits, test runs). It did the root-cause analysis from run events, tool output, and sandbox inspection, wrote the code and tests, and ran local verification. ## Checklist - [x] I have included a thinking path that traces from project context to this change - [x] I have specified the model used (with version and capability details) - [x] I have checked ROADMAP.md and confirmed this PR does not duplicate planned core work - [x] I have searched GitHub for duplicate or related PRs and linked them above - [x] I have either (a) linked existing issues with `Fixes: #` / `Closes #` / `Refs #` OR (b) described the issue in-PR following the relevant issue template - [x] I have not referenced internal/instance-local Paperclip issues or links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip` URLs) - [x] My branch name describes the change (e.g. `docs/...`, `fix/...`) and contains no internal Paperclip ticket id or instance-derived details - [x] I have run tests locally and they pass - [x] I have added or updated tests where applicable - [x] I have updated relevant documentation to reflect my changes - [x] I have considered and documented any risks above - [x] All Paperclip CI gates are green - [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups - [x] I will address all Greptile and reviewer comments before requesting merge --------- Co-authored-by: Paperclip <noreply@paperclip.ing> Co-authored-by: Dotta <bippadotta@protonmail.com>	2026-11-03 07:09:52 -06:00
DottaandPaperclip	5e4cc01073	feat(workspaces): keep remote files off the webserver disk (#18403) ... Keep native sandbox workspace files independent of the webserver disk. Use encrypted saved versions and Postgres ownership so a replacement server can recover files and continue work. Enable the path by default for new eligible workspaces when durable storage is configured. Preserve explicit opt-outs and existing host workspaces. Include safe snapshot repair, Files access, import, migration and retention. Bound saved-Files resources, preserve imported Git recovery, reject unfinished Git operations, publish immutable concurrent captures, and verify permanent object-version deletion. Validated 471 targeted local controls, build/typechecks, all 40 CI partitions, fresh Greptile 5/5 and security review. The PR records original failed attempts and scoped retries. Co-Authored-By: Paperclip <noreply@paperclip.ing>	2026-10-31 14:54:01 -05:00
DottaandPaperclip	ed8fae8dbb	fix(workspaces): preserve completed shallow sandbox exports (#18221) ... ## Thinking Path > - Paperclip coordinates agent work and preserves its results. > - Remote execution copies completed workspace changes back to the host. > - An agent can fetch a published branch with shallow Git history. > - A full Git bundle omits the shallow boundary metadata and can fail host connectivity checks. > - This pull request carries the boundaries through the full-bundle fallback and imports through normal Git fetch. > - Recovery must also recognize completed native work on a reusable lease without treating it as ordinary executor reuse. > - Completed work can be saved without another provider turn, while existing host history remains connected. ## Linked Issues or Issue Description **What happened?** Sandbox finalization can fail with a missing parent commit after an agent checks out a separately fetched shallow branch. Re-exporting a full bundle repeats the failure because Git bundles do not encode shallow boundaries. **Expected behavior** Import the completed branch and saved files. Preserve existing host ancestry and concurrent host edits. Keep normal Git connectivity and workspace merge checks. **Steps to reproduce** 1. Prepare a sandbox from one host commit. 2. Fetch a different published branch with depth one and check it out. 3. Save a result file and restore the sandbox workspace. **Paperclip version or commit** Reproduced against master before this repair. The regression fails with the missing-parent error before the production change. Related public context: #15268 covers rewritten history integration. This repair handles shallow bundle transport before integration. Searches found no equivalent open repair. ## What Changed - Export shallow boundaries beside the full bundle when the delta import lacks history. - Unpack into a temporary shared bare repository. Keep parent connections already available on the host and import with Git's shallow fetch protocol. - Reject malformed boundary values and retain existing connectivity, branch, and concurrent-work merge guards. Keep boundary probes within 15 seconds without consuming the separate 60-second Git import budget. - Let source-bound preservation recover reusable leases only for the finalizer-selected, accepted successful native result and matching completion contract. Retain provider-stop, physical ownership and host-writer checks; ordinary reusable sources remain blocked. - Classify invalid Git metadata separately from omittable unsafe archives. Keep native finalization failed and preserve service-owned file recovery; carry the sender's dedicated rejection across the command boundary without transient retries. - Share the failure allowlist across bounded run/activity projections and cancelled-preservation selection. Migration `0416` rebuilds the matching partial index; task chat retains the non-retryable recovery notice. - Add real Git, filesystem sandbox and database recovery regressions. Update execution semantics and affected verification maps. ## Verification - Red: real filesystem sandbox restore failed with the same missing-parent/revision-walk error before the export repair. - Green: 240 focused Git, workspace restore, sandbox transport and native-finalization tests pass. Coverage includes both transfer paths, malformed/oversized metadata, a genuinely shallow host with its original boundary intact, and concurrent host work with both merge parents verified. - Red/green: a 14-second simulated probe left the final real Git fetch only 45,893 ms before the budget split. It now retains over 55 seconds after the probes; a 16-second probe exhausts its own budget before host import. - Red/green: an oversized read progress report was retried three times before its distinct metadata classification. It now aborts the first read before payload consumption, leaves the host tip unchanged and does not retry. - Red/green: the real metadata error was swallowed by best-effort export and native finalization incorrectly returned success. Both regressions now pass; all 240 focused Git/restore/native-finalization tests pass. A PostgreSQL/filesystem fault-injection test also verifies retained files, failed run, service-owned recovery barrier, no preservation receipt and no new wake. - Red/green: duplicate metadata produced 47 Git process starts before deduplication; the bounded-work regression now passes. Oversized byte and boundary inputs fail before Git probes. - Recovery red: both reusable lease policies exhausted recovery despite a selected accepted successful result. The assembled PostgreSQL/filesystem path now passes for retained and both reusable policies, including idempotent re-admission after exhausted automatic recovery, saved files, no agent wake, and once-only existing-result finalization. - Source verification controls reject ordinary reusable leases, rejected/failed/unselected results, another physical allocation owner, and an active host writer without changing recorded state. - The 78-test PostgreSQL/filesystem recovery/source suite passed before the metadata classification correction. Its new persisted metadata-failure regression also passes. Full workspace typecheck and build pass at final head `69f10daab2`. - `node scripts/check-maps.mjs` and `git diff --check` pass. - Full local `pnpm test:run` attempts did not finish. They are not counted as passes. Early focused runs exceeded 5-second and 30-second fixture deadlines; the final serial suite passed all 176 tests with a 30-second per-test budget in 56.8 seconds. - Red/green: both bounded PostgreSQL projections dropped the new code in oversized results. All 19 source/projection cases now pass, plus an actual index-predicate test that excludes a metadata repair hold and still selects ordinary cancelled work. - Red/green: an oversized sender `.git/shallow` lost its error type before host validation. The real transport test now verifies one typed rejection, no shallow-payload read, and an unchanged host tip. All 465 command/sandbox/task-chat tests pass, and token/migration gates pass. - Full typecheck/build pass after these final contract corrections at `69f10daab2`; all 20 PostgreSQL source/projection/index contracts pass. All current-head CI checks passed; Greptile is 5/5 with no unresolved review threads. Merged #18230 supplies the CI-cache and Linux shell-fixture baseline repairs; their duplicate changes have been removed from this PR. The final Runner lane passed after one justified rerun of an unchanged authentication fixture timeout (all 11 fixture tests also pass locally). Previous CI failures and incomplete local runs remain recorded; live deployment and retained-run recovery remain separate verification. ## Risks - The fallback creates a temporary shared bare clone. Metadata is limited to 64 KiB and 256 unique boundaries, duplicate/parent probes are cached, and Git import has a 60-second command budget plus a separate 15-second boundary-probe budget. It runs only after a missing-history import failure. - Incorrect boundaries could hide real host ancestry. The importer retains available parent connections, and regressions cover that case. - The full-bundle fallback can transfer a bundle twice. This preserves the existing fast delta path; removing that extra transfer is outside this correctness repair. - Preservation eligibility expands only for completed native exports on reusable leases. It creates no provider turn and leaves ordinary reusable leases ineligible. Database/filesystem regressions cover result selection and competing physical/host ownership. - The migration rebuilds one partial index; no tables, columns or user records change. There are no agent execution admission, model, trust, recovery permission, workflow or lockfile changes. ## Model Used OpenAI Codex, GPT-6, with reasoning, code execution, and browser tools. The exact serving variant and context-window size are not exposed in this session. ## Checklist - [x] I have included a thinking path that traces from project context to this change - [x] I have specified the model used (with version and capability details) - [x] I have checked ROADMAP.md and confirmed this PR does not duplicate planned core work - [x] I have searched GitHub for duplicate or related PRs and linked them above - [x] I have either (a) linked existing issues with `Fixes: #` / `Closes #` / `Refs #` OR (b) described the issue in-PR following the relevant issue template - [x] I have not referenced internal/instance-local Paperclip issues or links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip` URLs) - [x] My branch name describes the change (e.g. `docs/...`, `fix/...`) and contains no internal Paperclip ticket id or instance-derived details - [x] I have run tests locally and they pass - [x] I have added or updated tests where applicable - [x] I have updated relevant documentation to reflect my changes - [x] I have considered and documented any risks above - [x] All Paperclip CI gates are green - [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups - [x] I will address all Greptile and reviewer comments before requesting merge --------- Co-authored-by: Paperclip <noreply@paperclip.ing>	2026-10-29 20:02:53 -05:00
DottaandPaperclip	9f3fc2094f	Fix shared workspace seed capacity and trace deferred copyback (#18181) ... Apply the existing company quota to company-shared workspace seed buckets. Preserve individual seed limits and recheck size after verification. Trace each deferred native workspace finalization check and its resumed copyback under the same hashed run ID. Keep existing admission, ownership and retry behavior. Co-Authored-By: Paperclip <noreply@paperclip.ing>	2026-10-29 12:44:34 -05:00
3 people	a019d00a39	fix(server): wake native workspace finalization from committed work (#17734) ... ## Thinking Path > - Paperclip is the open source app people use to manage AI agents for work. > - Native runs can accept a result before workspace copy-back finishes. > - The periodic orphan pass repeatedly tries this recovery, including cases that require operator action. > - Copy-back needs exact ownership evidence. A generic timer cannot grant that authority. > - This pull request wakes workspace recovery from committed changes and local owner completion. > - Saved retries use the existing scheduler. Empty work, completed barriers, and operator holds become quiet. ## Linked Issues or Issue Description Refs #17717. This is slice 52 of the recurring-server sleep stack, targeting master after parent #17717 merged at `4c56702e06c698cc10d4a86514669aba0f4d9a9b`. Related work: #17709 (status reassessment), #17687 (unsafe export recovery), and #16478 (workspace repair holds). This PR covers native workspace copy-back and validation. Result commit/projection and resource settlement remain separate recovery duties. It does not claim full-instance sleep. ## What Changed - Register a company/run/task-scoped workspace worker. Reconstruct accepted, unfinished work from existing records. Use saved retry and lease deadlines. - Notify from both accepted-result writers (control-plane and PRP coordinator), workspace receipts, coordinator changes, operator confirmation, retained workspace repair, and relevant task updates. Notifications follow the outer transaction. - Distinguish active local ownership, busy external ownership, pending Cloud evidence, operator-required evidence, and changed bindings. Only concrete external ownership/evidence waits receive a scoped retry. - Preserve advisory locks, signed stop proof, exact binding checks, physical callback joins, and existing failure policy. Join physical operations during shutdown. - Respect the existing heartbeat execution-suppression policy before discovery and execution; wake suppressed work on settings activation. - Skip physical workspace recovery in the enabled periodic orphan pass. Keep direct/startup reconciliation and the remaining result/cleanup recovery paths. - Keep routine company-only finalization hints quiet. Ordinary work requires issue/run scope; explicit settings and owner-release events keep their company-wide contract. - Preserve the parent's entire Runner/package tree, profile 80 and all historical identities. Add the dated obligation, producer, lifecycle and limitation audit. ## Verification - Current local source: `4059b24e3ea5c623be54ade18ec9b6ab78eb0289`, prepared by a normal merge of the current parent. The sole manual conflict keeps ordinary workspace fanout inside the existing issue/run guard. All 1,198 parent-only, 15 owned-only and 10 automatic shared paths are preserved. The complete package tree matches the parent byte-for-byte. - Controlled regression: the original workspace-only unscoped fanout performs three candidate SELECTs for routine company hints. The same zero-query assertion passes with scoped fanout. A real accepted result then produces one successful workspace settlement and returns to quiet. The failed baseline remains in the audit. - The first complete local group passes **1,693 cases in 14 files**, including all 19 workspace-worker cases. It covers both accepted-result producers, physical ownership, export retry/failure, finalization recovery, arbiter corpus, issue recovery actions, control-plane port, workspace recovery, heartbeat recovery, startup, retained cleanup and native execution. - Separate process-recovery and external-chat response files qualify the changed recovery/settlement paths without sharing their general test database with other files. Both pass in full: 410 process-recovery cases in 162.79 seconds and 273 external-chat cases in 53.79 seconds. The total is **2,376 distinct passes in 16 complete files**, with no skips. Normal merge `5c46c52873158529736b8349e4d44658865108ee` adopts the parent squash with this entire tested child tree unchanged. - Production server typechecking, build, module boundaries, migration order and source-profile checks pass. Thirteen dedicated PostgreSQL 17 fixtures use the unchanged migration 413 schema. Embedded-only paths use the existing recovery helper with fresh per-call fixtures. All temporary imports are restored byte-exact. No test assertion or timeout is relaxed. - Runner validation belongs to the unchanged parent package tree: 130 passing installation/compatibility/transport cases, 22 installed ACPX/Grok contract cases and 26 native-provider Rust cases. One existing opt-in closed Pi snapshot case is skipped because its distribution root is not configured. These are source-scoped checks, with no live provider qualification claim. - The owner audit at `doc/plans/2026-10-26-native-workspace-finalization-sleep-audit.md` preserves earlier failures and their disposition. Current-head acceptance: all 57 checks are clean, including protected CI and security. Greptile gives 5/5 on `7df5c9c44ea9e171be3c61b4430d3727b10f3337` with no actionable findings. Earlier scores do not substitute for this result. No Ponytail verdict is present under the authorized missing-review policy. - No claim of a full local repository suite, deployed app/database sleep, expanded Cloud wake coverage or measured cost savings is made. ## Risks - Supported wake producers are in-process application services. This adds no cross-replica or independent SQL-writer transport. - A real unresolved export still needs recovery. Busy owners and pending Cloud stop evidence retain a 30-second scoped check. No timeout authorizes copy-back. - Result projection and resource release still use their existing recovery. Some existing cleanup failures remain best effort; this PR does not infer cleanup success from a workspace barrier. - Cloud alarm coverage and host-sleep safety remain unchanged. No deployed suspension or cost savings have been measured. - Parent #17717 is merged. Current base is master at `4c56702e06c698cc10d4a86514669aba0f4d9a9b`. Fresh current-head CI and review must pass before this slice merges. ## Model Used OpenAI Codex, GPT-6 family, with repository tools and code execution. The exact serving model ID and context-window size are not exposed in this session. No subagent was used for this slice. ## Checklist - [x] I have included a thinking path that traces from project context to this change - [x] I have specified the model used (with version and capability details) - [x] I have checked ROADMAP.md and confirmed this PR does not duplicate planned core work - [x] I have searched GitHub for duplicate or related PRs and linked them above - [x] I have either (a) linked existing issues with `Fixes: #` / `Closes #` / `Refs #` OR (b) described the issue in-PR following the relevant issue template - [x] I have not referenced internal/instance-local Paperclip issues or links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip` URLs) - [x] My branch name describes the change (e.g. `docs/...`, `fix/...`) and contains no internal Paperclip ticket id or instance-derived details - [x] I have run tests locally and they pass - [x] I have added or updated tests where applicable - [x] I have updated relevant documentation to reflect my changes - [x] I have considered and documented any risks above - [x] All Paperclip CI gates are green - [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups - [x] I will address all Greptile and reviewer comments before requesting merge --------- Co-authored-by: Paperclip <noreply@paperclip.ing> Co-authored-by: Codex <noreply@openai.com>	2026-10-29 04:40:01 -05:00
Nicky LeachandPaperclip	a708a13336	Separate plugin workspace completion from maintenance inspection (#17329) ... ## Thinking Path > - Paperclip manages AI agents and their work. > - Storage plugins own remote task workspaces. > - Run completion currently requests the same inspection used for storage cleanup. > - That inspection can fetch remote refs and scan files after the agent has finished. > - Completion needs retained workspace identity and durable writes, not permission to delete files. > - This change adds an optional completion operation and keeps maintenance inspection separate. ## Linked Issues or Issue Description **What happened?** A successful plugin-backed run can fail during completion because the storage provider performs a slow remote-recoverability inspection. Dirty or unpublished output does not need a deletion-safety proof to remain valid task output. **Expected behavior** Completion verifies the assigned workspace and confirms durable writes through the provider. Cleanup still requires the existing full inspection. **Steps to reproduce** Run a task with plugin-owned storage whose inspection fetches remote refs. Let the agent finish, then observe completion waiting for the maintenance inspection. Related context: #16428 added finalization observability. The duplicate search found no existing PR for this provider contract. ## What Changed - Add optional `workspaceProvider.finalizationVersion: 1` and strict `finalize` / `finalized` schemas. - Pass original run and agent context through live completion and recovered completion. - Give the new operation a 30-second deadline and keep ownership checks and lifecycle serialization. - Retain the inspection fallback for providers without the capability. Keep maintenance inspection and removal unchanged. ## Verification - SDK build passed. - Targeted SDK and completion unit tests: 7 passed. - Added integration coverage for capability selection, legacy fallback, maintenance separation, and failure propagation. - Local integration setup timed out starting PostgreSQL; the integration suite passed in GitHub CI. - Full build/typecheck and broader tests passed in GitHub CI (55 successful checks, 2 skipped). Local checks remained targeted as requested. - Diff reviewed for secrets and operational identifiers. ## Risks The capability is opt-in. Providers must not advertise it until their completion implementation is available. An unavailable provider or failed durability barrier remains retryable. No schema or stored-binding migration is required. Test-file size exception: the provider integration suite grows from 973 to 1,002 lines. The 29-line case follows the same prepared binding through legacy completion, opted-in completion, and maintenance inspection using the existing single-connection database fixture. Keeping it there avoids a second embedded-Postgres lifecycle for one transition test. The completion helper unit tests are in a separate focused file. ## Model Used OpenAI GPT-6 Codex, with reasoning and code/test tools. ## Checklist - [x] I have included a thinking path that traces from project context to this change - [x] I have specified the model used (with version and capability details) - [x] I have checked ROADMAP.md and confirmed this PR does not duplicate planned core work - [x] I have searched GitHub for duplicate or related PRs and linked them above - [x] I have either (a) linked existing issues with `Fixes: #` / `Closes #` / `Refs #` OR (b) described the issue in-PR following the relevant issue template - [x] I have not referenced internal/instance-local Paperclip issues or links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip` URLs) - [x] My branch name describes the change (e.g. `docs/...`, `fix/...`) and contains no internal Paperclip ticket id or instance-derived details - [x] I have run tests locally and they pass - [x] I have added or updated tests where applicable - [x] I have updated relevant documentation to reflect my changes - [x] I have considered and documented any risks above - [x] All Paperclip CI gates are green - [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups - [x] I will address all Greptile and reviewer comments before requesting merge --------- Co-authored-by: Paperclip <noreply@paperclip.ing>	2026-10-23 09:07:35 -07:00
Nicky LeachandPaperclip	00331e0254	Connect native Runner admission to plugin-owned workspaces (#16978) ... ## Thinking Path > - Paperclip manages work for AI agents. > - A plugin can own an execution environment and its files. > - #17029 supplies the task driver and bounded setup verification. > - Heartbeat still prepares workspace files on Core and expects a shell transport. > - This PR gives the selected plugin ownership of workspace preparation and native task execution. > - Core keeps admission, tool authority, and recovery checks. ## Linked Issues or Issue Description **Subsystem affected** Heartbeat workspace admission and native Runner execution. **Problem or motivation** A task-only plugin cannot run through Core filesystem staging or shell execution. Native admission and recovery must use the same lease and workspace ownership. **Proposed solution** Use the task driver from #17029. Resolve workspace and project identities without Core file operations. Connect native dispatch and restart recovery to that driver. **Alternatives considered** Keep workspace admission and dispatch in one change. A workspace change alone would leave dispatch on the previous transport. An execution change alone would leave Core staging files for the wrong host. ## What Changed - Enable plugin environment selection for native workspace sessions. - Resolve workspace metadata and authorized project references without Core checkout, copy, or provision operations. - Preserve agent-default and primary workspace policies. Use the pinned workspace provider for plugin-backed project storage. Reject unsupported Core service commands and cross-owner reuse. - Connect native execution to the prepared task driver. Keep assigned MCP authority on Core. - Save exact checkpoint identity, transfer selected account refreshes, and require termination proof before replacement or cleanup. - Complete managed plugin workspaces through their storage provider. Use the same check after a restart. Keep branch validation and leave task-owned files on the plugin. - Include default instruction content in runtime synchronization when no instruction directory exists. - Defer new-agent Copilot verification until the saved-agent lifecycle can acquire the agent-owned computer. ## Verification - Rebased onto `origin/master` at `898144f4b3`. Master advanced once during verification. Both manual conflicts joined import blocks: one in `native-session-executor.ts`, and one in `heartbeat/runtime-execution.ts`. The seven patches retain their logic. The first rebased head passed repository typecheck, build, all 862 focused execution/finalizer cases, and all CI gates. The latest head `93e5a72892` passes server typecheck and all 880 focused execution, finalization, and execution-control notification tests. All 54 CI/review checks pass, with two expected skips. Greptile ran automatically and scored this head 5/5 with no unresolved findings. No new review or Apex request was made for these import-only resolutions. - The successful CI workflow initially left three stale job-check reports. Targeted policy and summary reruns cleared the reports. No source change or test fix was needed. - Repository typecheck and build pass: `pnpm -r typecheck` and `pnpm build`. - Focused native execution and restart tests pass: 795 cases. The account and harness suites pass: 159 cases. Workspace admission passes: 48 cases. The SDK task lifecycle, workspace API, runtime-hook, and instruction checks also pass. - The heartbeat integration case uses the merged workspace provider contract and reaches native dispatch with no project files on Core. The new-agent case confirms that creation leaves the agent in `preparing` until lifecycle verification. - Map validation and the Copilot source-identity check pass. No Runner implementation or source-identity bump is in this PR. - The first rebased workspace run found two stale path assertions and a recovery guard that did not recognize task-owned targets. These are fixed. The storage integration fixture also needed its persisted source binding; the production authorization check stays in place. - Two prior review findings required rejection of Core service startup and cross-owner workspace reuse. The existing admission fixtures now check both failures. The installed-account authentication finding was fixed in merged #17029. - Tests reuse the current fixtures. No new provider test matrix or live Runner process is added for these fixes. - The prior head `2db273ec12` passed CI on its first attempt and reached standard Greptile 5/5. Apex scored 4/5 and found local-folder checks during plugin completion and recovery. - The completion fix reproduces both failures. It passes all 110 cases in the runtime execution, workspace finalizer, and workspace provider integration suites. Server typecheck and map checks pass. CI passed on `62d8335b4e` on its first attempt, and standard Greptile scored 5/5. The next Apex review scored 4/5. It found that a failed plugin inspection could abort restart recovery. - The restart fix records a failed workspace receipt and uses the current run retry policy. A regression first reproduced the aborted pass. It now checks retry state, retained results, and completion of another workspace in the same pass. All 68 finalizer cases and server typecheck pass. CI passed on `7d4016323b` on its first attempt. Standard Greptile and Apex both scored 5/5. Apex left one P2 about lost failure codes. - The diagnostic fix keeps the known branch and owner mismatch codes in receipts and run recovery state. It gives repair guidance for those codes and keeps unknown plugin errors generic. All 96 affected finalizer cases and server typecheck pass. Before the rebase, required CI passed on `c2fa61c6c8` on its first attempt. Standard Greptile and Apex both scored 5/5 on that head, with no unresolved findings. The new head retains these reviewed patches. - The earlier Superagent scan on `c2fa61c6c8` was inconclusive after a pinned merge-base checkout failed or timed out. The current scan on `93e5a72892` passes. - The exact rebased head passes all 48 workspace cases and server typecheck. The first local test launch could not bind PostgreSQL inside the sandbox. The authorized local-server run passed. - The prior head reached standard Greptile 5/5. Its first CI run hit an unchanged Runner cleanup timeout and an external build-runner shutdown. Both jobs passed on the single retry. The timeout cause is not established. - A local regression check found that a retained Core workspace could also enter a plugin task without file transfer. Core now rejects this move before provider work. The existing ledger test covers both directions and confirms that the source files stay intact. - The first active standard review scored 4/5. It found that a fresh plugin retry could enter Core Git preparation. This mode now uses the existing unsupported-storage error before workspace resolution or acquisition. Both unsupported-mode cases pass, and server typecheck passes. - No live Cloud or provider validation was run. ## Risks - The prerequisite #17029 is merged. This PR targets master. - Native plugin tasks support per-turn workspace sessions. Core service commands and fresh retries that import retained files remain unsupported. A workspace storage plugin can use the modes and strategies it declares. - Core-managed credentials support Codex and direct Claude accounts. Other managed credential routes fail closed. Other harnesses can use an installed account. - A provider must preserve its prepared configuration and report process termination correctly. Uncertain termination keeps the task pending cleanup. - Cloud deployment and live provider validation remain separate. ## Model Used OpenAI Codex, GPT-6. The exact model ID and context window are not exposed in this session. Tool use includes code editing, local tests, and the GitHub CLI. ## Checklist - [x] I have included a thinking path that traces from project context to this change - [x] I have specified the model used (with version and capability details) - [x] I have checked ROADMAP.md and confirmed this PR does not duplicate planned core work - [x] I have searched GitHub for duplicate or related PRs and linked them above - [x] I have described the issue in-PR following the relevant issue template - [x] I have not referenced internal/instance-local Paperclip issues or links - [x] My branch name describes the change and contains no internal issue details - [x] I have run focused tests locally and they pass - [x] I have added or updated tests where applicable - [x] I have updated relevant documentation to reflect my changes - [x] I have considered and documented any risks above - [x] All Paperclip CI gates are green - [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups - [x] I will address all Greptile and reviewer comments before requesting merge --------- Co-authored-by: Paperclip <noreply@paperclip.ing>	2026-10-21 08:22:48 -07:00
DottaandPaperclip	14795136f5	fix(runtime): finalize and recover sandbox workspace exports safely (#14402) ... Serialize native workspace finalization, validate streamed archives within bounded limits, and quietly recover unsafe exports from saved results. Preserve exact allocations for exhausted transient failures and provide export-only retry without rerunning the provider. Consolidates #14314, #14315, #14329, and #14334 while preserving the already-merged finalization label changes. Co-Authored-By: Paperclip <noreply@paperclip.ing>	2026-09-28 10:57:32 -05:00
DottaandPaperclip	889947c238	feat: add experimental native chat connectors (#13038) ... ## Thinking Path > - Paperclip is the open source app people use to manage AI agents for work. > - People also ask agents for work in their existing chat tools. > - Each external conversation needs one task and a current authorized source. > - Retries, Stop, and provider failures must not duplicate work or expose private data. > - The first chat PR establishes the opt-in provider and data contracts. > - This PR adds experimental channel integration and its durable control plane. > - Users can request work from connected channels and inspect delivery in Paperclip. ## Linked Issues or Issue Description Refs #13100 and #13092. This is the second of exactly two chat PRs. Foundation #13100 is merged and changed 143 files. Runner prerequisite #13092 is also merged. This PR changes 400 files against master, below the 500-file review limit. It contains no wireframe images or HTML galleries. ## What Changed - Add native Slack, GitHub, Microsoft Teams, Telegram, and Discord chat connections. Keep chat disabled unless the operator enables experimental chat connectors. Preserve the production GitHub tool connection and its normal setup path. - Bind each provider bot identity to one immutable Paperclip agent. Bind each admitted external conversation to one task. Paperclip owns tasks, runs, permissions, and audit records. - Add durable admission, per-conversation queues, questions, task controls, progress, final replies, images, files, and delivery receipts. Board comments remain internal unless explicitly sent to the channel. - Check current identity, provider reach, resource access, credentials, runtime generation, and exact source before provider effects. Keep private responses private. Never send raw reasoning, private logs, credentials, or tool arguments. - Hold uncertain sends for explicit audited resolution. Make Board Send-to-channel atomic and idempotent. Keep reconnect and setup credentials in Paperclip secret storage. - Preserve current native-runner authority across retries, lost acknowledgements, and recovery. Keep immutable input and completion contracts separate from newer user input. Receipt reconciliation cannot launch a provider. - Reconcile chat close/new ordering and provider-effect lock order. Audit resource access changes in the same transaction. Submit only the selected resource from each UI toggle so stale pages cannot undo unrelated access changes. - Drain Codex stdout before certifying process exit. Bound the drain with the existing shutdown grace. Preserve observed terminal authority without treating an undrained process as successful or reusable. - Incorporate master `018ca5da` with its ACP Stop, mobile task layout, runner packaging, and official lock changes. Preserve dedicated chat-answer continuations in both directions when ordinary queued comments are adopted after Stop. - Fence late adapter readiness behind an earlier Stop for the same run. Preserve verified cleanup for registered adapters. Handle single Stop, agent pause, duplicate Stops, and failure release without creating a false cancellation receipt. - Incorporate master's `6dd48cad4` wake-queue extraction. Preserve exact failed-chat retry authorization and lineage, retired question-source suppression, and the block on generic recovery that would discard the admitted source. Fresh deferred input retains its separate promotion path. - Incorporate master `2a05b5ed3` and its queue-admission extraction, simplified transaction ports, and separate runner CI job. Preserve exact durable receipts, actor separation, and dedicated-answer isolation through the new module. A failed receipt insert rolls back the accompanying deferred-wake merge. ## Verification Current head: `afe19299d06253cb628eb398e91d1200ea9f412a`, incorporating master `2a05b5ed3457ea33efd6895520447d1d97fe98d8`. The conflicts are resolved. This successor fixes two test-harness boundaries exposed by CI: per-case route-module preparation and actual durable-save completion before intentional runner termination. Production code and all existing test/turn deadlines are unchanged. [Exact-head Greptile review](https://github.com/paperclipai/paperclip/pull/13038#issuecomment-5587250594) is **5/5**, completed September 10 at 13:20:55 UTC, with no actionable findings or open review threads. [Fresh exact-head CI](https://github.com/paperclipai/paperclip/actions/runs/34481724341) passes **all 24 jobs**, including Build and both required aggregates. Normal exact-head guarded merge was attempted and rejected by the remaining branch approval policy: CODEOWNER review is required and no human approval is present. Normal **squash auto-merge is enabled** as of September 10 at 13:36:26 UTC. Requested CODEOWNERS have been notified; no approval bypass or self-approval was used. Earlier-head results below remain historical evidence, not qualification of this successor. - Final exact-head Linux evidence: 995/995 chat integration cases; 36/36 agent-skills routes; 35/35 runner live-session cases, including real process kill/resume; 1948 runner Vitest cases with three existing benchmark/platform guards; 870/870 API-authority cases; and 104 browser cases with four existing optional skips. Rust, conformance/replay, full repository build, typecheck, canary, all server/workspace shards, and both required aggregates pass with normal CI concurrency. Earlier failed attempts remain recorded below. - Latest test-only qualification: 141/141 route/permissions/authentication cases pass in separate cold forks, with plain server types and independent review clear. The real-runner suite passes 35/35, with plain runner types and independent review clear. A controlled premature-save acknowledgement fails as expected; matching ownership/effect/process evidence, rejected saves, real turn outcome, test abort, and pre-kill liveness are covered. No local reproduction of the original CI scheduling failure is claimed. The preceding [CI run](https://github.com/paperclipai/paperclip/actions/runs/34479680858) passes 21/24 jobs, including all 995 Linux chat cases and browser aggregate (104 passed, four existing optional skips); only Build, the skills serialized shard, and the required verification aggregate fail. Its exact-head Greptile review was 5/5. Both failed job logs are retained. - Final fixture qualification: all eight focused Discord cases and all 995 chat integration cases pass. The exact modal statement/PID is observed before taking the real connection lock; the test then proves its actual blocking relationship before mutation. Original SQL execution, provider behavior, negative assertions, and 1s/15s timeouts remain unchanged. Independent review is clear and test/production hashes remain frozen. The preceding [CI attempt](https://github.com/paperclipai/paperclip/actions/runs/34477184777) passed 22 jobs, including Build/runner, typecheck, canary, all other test shards, and browser aggregate (104 passed, four existing optional skips); the two fixture failures and failed verification aggregate remain recorded, not relabeled as a pass. - Current queue-module composition: 308/308 recovery/batching/queue/Stop tests; 995/995 full chat integration; 89/89 module tests, including real PostgreSQL receipt-insert rollback; 24/24 workflow/module-boundary tests; plain server and UI types. All four actual local process/ACP browser paths pass in 1.4 minutes. Fresh databases, no skips or retries, stable reviewed source hashes. The initial boundary failure is retained; its no-op service wrapper was removed without changing recovery context or weakening the check. An exploratory standalone test-directory typecheck fails because its new upstream transformation config is not a standalone typechecking project; standard CI/build does not invoke it, and no configuration was weakened to suppress those diagnostics. - The preceding head `e02a63d462ce5d47433b0aeb632bb6fd20aab1ba` passed [all 24 CI jobs](https://github.com/paperclipai/paperclip/actions/runs/34436462958) and exact-head Greptile review at 5/5. Required CODEOWNER review prevented its normal merge before master advanced again. - Final extracted-module composition: 307/307 recovery, batching, queue and Stop-control tests; 995/995 full chat integration; 49/49 module tests including eight PostgreSQL adapter cases; and 19/19 issue-update tests. Plain server types pass. All four actual local process/ACP browser paths pass in 1.3 minutes. Fresh databases, no skips or retries in these cohorts, frozen source hashes, and independent review clear. - The preceding head `3e4e1c1c` passes [all PR CI jobs](https://github.com/paperclipai/paperclip/actions/runs/34415826820), including Build and required `ci / verify` and `ci / e2e`. Both the original Rust failure and the previously load-sensitive lineage fixture pass with unchanged Linux concurrency. Master advanced afterward and required this reconciliation. - Final master composition: 448/448 focused UI tests, 186/186 adapter tests, 24/24 queue/control tests, and 11/11 packaging tests. Plain UI, server, shared, and adapter types pass. Token gates and diff checks pass. Independent server and UI reviews are clear. - Stop-registration regression: both real-service cases fail against exact `a95` source and pass with the fix. The full corrected recovery/control suite passes 265/265. Duplicate-owner and failed-Stop controls also pass. Plain server types pass. The readiness barrier prevents provider startup without adding an acknowledgment to an already terminal run. - Final qualification strengthens terminal-field equality and repeats both affected cases successfully on a fresh database. All four actual local process/ACP browser paths pass again in 1.3 minutes, without skips or retries. The final screenshot shows Cancelled, a paused subtree, retained input, and no error toast. - Two new actual-service regressions fail before the merge fix. They prove that queued-comment adoption could consume a dedicated chat answer or add unrelated input to that answer. The fixed four-case cohort passes, including ordinary upstream continuation and adapter Stop controls. Full recovery passes 257/257. All four actual local process/ACP Stop browser flows pass in 1.4 minutes, without skips or retries, on a fresh database. - The unchanged runner artifact was qualified with 171/171 transport tests, 870/870 API-authority tests, conformance 1/1, and replay 11/11. Six controlled reader tests prove the exit/drain repair. Its local serial Rust workspace passed 546 top-level cases plus two invoked helpers; the later passing Linux CI supplies default-concurrency evidence. - Prior exact-source full chat integration passes 995/995. Settings regressions cover concurrent stale pages, 501 destinations, pending state, rejected updates, and explicit retry. These deterministic tests do not prove live provider behavior. - Retained failed attempts and their causes are in the [qualification log](https://github.com/paperclipai/paperclip/blob/afe19299d06253cb628eb398e91d1200ea9f412a/doc/plans/chat-adapters/2026-09-08-chat-queue-and-webhook-repair.md). The first merge adapter run timed out while macOS slept for 290 seconds. Its unchanged repeat passed with a temporary sleep guard. No assertion, deadline, or CI gate was weakened. Review commands include `pnpm --filter @paperclipai/server exec vitest run src/__tests__/heartbeat-process-recovery.test.ts src/__tests__/issue-queued-comments-routes.test.ts` and `pnpm exec playwright test --config tests/e2e/playwright.config.ts tests/e2e/acp-stop-continuation.spec.ts`. Database suites require fresh disposable databases. See the [browser runbook](https://github.com/paperclipai/paperclip/blob/afe19299d06253cb628eb398e91d1200ea9f412a/doc/plans/chat-adapters/2026-09-04-chat-adapters-browser-e2e-runbook.md) for provider setup and separate live acceptance steps. ## Risks - This remains experimental. Deterministic tests and bounded live evidence do not establish every provider feature, tenant, permission layout, or media shape. Teams work-tenant qualification is still open. - Failed and uncertain provider effects remain visible and can require operator action. A transport receipt does not prove recipient visibility. - Native controller and runner artifacts must remain compatible. Preserve lease ownership, terminal authority, source binding, and quarantine during future changes. - Access and audit rows commit together, but activity notifications remain best-effort. This is not a new durable event outbox. - The PR operation does not deploy a live server, replace its runner, or change provider permissions. Remaining live qualification is documented in the [temporary handoff](https://github.com/paperclipai/paperclip/blob/afe19299d06253cb628eb398e91d1200ea9f412a/doc/plans/chat-adapters/2026-09-08-open-qualification-followups.md). ## Model Used OpenAI Codex assisted with implementation, tool execution, testing, and review. The work records `gpt-6-astra` assistance. The environment does not report a context-window size. No private reasoning traces are included. ## Checklist - [x] I have included a thinking path that traces from project context to this change - [x] I have specified the model used (with version and capability details) - [x] I have checked ROADMAP.md and confirmed this PR does not duplicate planned core work - [x] I have searched GitHub for duplicate or related PRs and linked them above - [x] I have either (a) linked existing issues with `Fixes: #` / `Closes #` / `Refs #` OR (b) described the issue in-PR following the relevant issue template - [x] I have not referenced internal/instance-local Paperclip issues or links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip` URLs) - [x] My branch name describes the change (e.g. `docs/...`, `fix/...`) and contains no internal Paperclip ticket id or instance-derived details - [x] I have run tests locally and they pass - [x] I have added or updated tests where applicable - [x] I have updated relevant documentation to reflect my changes - [x] I have considered and documented any risks above - [x] All Paperclip CI gates are green - [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups - [x] I will address all Greptile and reviewer comments before requesting merge --------- Co-authored-by: Paperclip <noreply@paperclip.ing>	2026-09-10 10:06:45 -05:00
Dotta	1dceee9a4e	fix(runner): persist warm Daytona workspaces (#12901) ... ## Thinking Path > - Paperclip manages AI agent work and the execution state for each task. > - Remote agents run in sandbox environments such as Daytona. > - Daytona keeps files while a sandbox is stopped, but deletion removes those files. > - Runner Codex did not copy successful remote workspace changes back to the host workspace. > - A warm sandbox could therefore hide data loss until Daytona replaced or deleted the sandbox. > - This pull request makes the host workspace durable after every successful turn and keeps verified reusable sandboxes warm. > - The benefit is reliable multi-turn work across warm reuse, restart, stop, and sandbox replacement. ## Linked Issues or Issue Description **What happened?** A successful native Codex turn in Daytona could leave workspace changes only in the remote sandbox. A later warm turn appeared to work because it reused that filesystem. A replacement sandbox could start from stale host data and lose the successful changes. **Expected behavior** Paperclip must merge each successful remote turn into the authoritative host workspace before it completes the run. A verified warm lease may reuse its remote files. A replacement lease must reconstruct the exact durable workspace seed. **Steps to reproduce** 1. Run Codex in a reusable Daytona environment. 2. Write a file during one successful turn. 3. Replace the Daytona sandbox before the next turn. 4. Observe that the next turn can start without the prior file on the unpatched code. Related remote workspace foundation: #10070. ## What Changed - Added explicit `host_current`, `durable_seed`, and `adopt_remote` workspace preparation modes. - Added atomic, versioned native workspace descriptors and seed archives under `PAPERCLIP_HOME`. - Added real native sandbox export and three-way host merge before terminal result completion. - Added workspace-only recovery after a proposed result. Recovery does not submit another provider turn or consume the provider retry budget. - Added fail-closed handling when a sandbox with unexported changes is gone. - Kept healthy reusable Daytona sandboxes started for legacy Codex and Runner Codex. - Kept the Runner Codex process and provider session across verified warm turns. - Added the paid `daytona-warm-continuity` browser suite. It contains exactly the legacy Codex and Runner Codex cells. Each cell performs three measured turns. - Documented `pnpm test:e2e:runner -- --suite daytona-warm-continuity`. No package script was added. - Added no database migration. The metadata format is backward compatible and idempotent. ## Verification - `pnpm typecheck` - `pnpm test:e2e:runner:unit` — 114 passed - Native workspace, finalizer, session, and environment tests — 232 passed - Daytona provider tests — 150 passed - Workspace staging and merge tests — 98 passed - Runner transport tests — 63 passed - Legacy Codex restore tests — 5 passed - Rust format and compile checks pass through root typecheck - The paid Daytona suite was not run locally because the required Daytona, OpenAI, and immutable image credentials are not present. ## Risks - The main risk is an incorrect workspace identity or merge after a crash. Durable descriptors bind the run, workspace, lease, provider lease, local root, remote root, and baseline digest. Ambiguous evidence fails closed. - The host merge may conflict with concurrent host edits. The existing three-way merge and exclusion rules handle this case and surface failures. - A deleted sandbox cannot recover unexported bytes. Paperclip now blocks with `workspace_sync_out_unrecoverable` instead of reporting success or rerunning the provider. - There is no database migration. Descriptor writes and recovery are atomic and idempotent. ## Model Used OpenAI Codex with GPT-5. The run used agentic reasoning, repository inspection, code execution, test execution, Git, and GitHub CLI tools. ## Checklist - [x] I have included a thinking path that traces from project context to this change - [x] I have specified the model used (with version and capability details) - [x] I have checked ROADMAP.md and confirmed this PR does not duplicate planned core work - [x] I have searched GitHub for duplicate or related PRs and linked them above - [x] I have either (a) linked existing issues with `Fixes: #` / `Closes #` / `Refs #` OR (b) described the issue in-PR following the relevant issue template - [x] I have not referenced internal/instance-local Paperclip issues or links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip` URLs) - [x] My branch name describes the change (e.g. `docs/...`, `fix/...`) and contains no internal Paperclip ticket id or instance-derived details - [x] I have run tests locally and they pass - [x] I have added or updated tests where applicable - [x] I have updated relevant documentation to reflect my changes - [x] I have considered and documented any risks above - [x] All Paperclip CI gates are green - [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups - [x] I will address all Greptile and reviewer comments before requesting merge	2026-09-05 13:00:57 -05:00
DottaandDev Agent	25cf079ec5	feat(runner): add Codex-native application integration (#12591) ... ## Thinking Path > - Paperclip is the open source app people use to manage AI agents for work. > - The runner package is useful only when the application can start, observe, and recover a native Codex run safely. > - Existing direct adapters must keep their current execution and finalization paths. > - The application boundary therefore needs additive persistence, authorization, coordination, and recovery behind an explicit experimental adapter. > - This pull request adds that Codex-only boundary without activating generalized providers, remote environments, or the later task/SDK surfaces. ## Linked Issues or Issue Description **Subsystem affected** Shared contracts, database persistence, adapter utilities, server native-runtime services, and the experimental Paperclip Runner adapter. **Problem or motivation** The already-landed runner package has a qualified Codex path, but the application needs durable native-run state, guarded runtime selection, authenticated coordination, tool security, finalization, and recovery before the experimental adapter can be exercised safely. **Proposed solution** Add a Codex-only `paperclip_runner` application path behind the existing default-off native-runner setting. Bind native state and coordination to company/run identity, preserve persisted-run recovery, and leave every direct adapter on its existing legacy execution path. **Alternatives considered** The earlier stack boundary introduced a generalized executor and remote-environment lifecycle here. That made this PR depend on implementations in higher PRs and changed reusable sandbox behavior globally. Those pieces are now deferred together to #12592. **Roadmap alignment** ROADMAP.md does not list a conflicting native-runner integration project. This change adds the application boundary for the existing Runner architecture. ## What Changed - Added native run/result/finalization/provider-trace persistence, shared validators, and idempotent migration/replay coverage. - Added guarded Codex-only runtime selection, authenticated PRP coordination, recovery, finalization, and interaction services. - Added run/company-bound tool-gateway authorization, credential redaction, SSRF protections, and replay-safe behavior. - Added the explicit `paperclip_runner` adapter behind the default-off rollout setting. - Preserved legacy answered-question wake projection and direct-adapter execution/finalization paths. - Hardened cancellation so only owned in-memory child processes are signaled; persisted recycled PIDs/process groups are never trusted. - Retained the narrow Claude ACPX isolated-context security follow-up discovered after #12590. - Deferred the generalized executor, provider ingress, remote lifecycle, SDK/lab/eval work, release-process changes, and lockfile. ## Verification - Changed-file delta against `master`: 133 files. - GitHub Actions is the authoritative verification environment for this PR. - Full CI, security, and Greptile review will run on this lowest unmerged stack PR. - Local tests/build/typecheck were not run because this checkout is resource constrained. - Static diff/reference checks pass, and `pnpm-lock.yaml` is unchanged. ## Risks - This touches central heartbeat and agent-route code, so legacy compatibility is the primary risk. - Runtime selection remains Codex-only and explicit; direct Codex, Claude, OpenCode, process, HTTP, and plugin adapters remain on their existing paths. - Fresh native starts fail closed while the rollout flag is off; persisted native records remain readable and recoverable. - Cancellation, company/run binding, tool calls, status decisions, and completion writes are guarded or replay-safe. > For core feature work, check [ROADMAP.md](ROADMAP.md) first and discuss it in #dev before opening the PR. Feature PRs that overlap with planned core work may need to be redirected. ## Model Used OpenAI Codex, GPT-5.6, with repository tools, code execution, and parallel agent review. ## Checklist - [x] I have included a thinking path that traces from project context to this change - [x] I have specified the model used (with version and capability details) - [x] I have checked ROADMAP.md and confirmed this PR does not duplicate planned core work - [x] I have searched GitHub for duplicate or related PRs and linked them above - [x] I have either linked existing issues or described the issue in-PR following the relevant issue template - [x] I have not referenced internal or instance-local Paperclip issues or links - [x] My branch name describes the change and contains no internal Paperclip ticket id - [ ] I have run tests locally and they pass — GitHub Actions is authoritative for this resource-constrained checkout - [x] I have added or updated tests where applicable - [x] I have updated relevant documentation to reflect my changes - [x] I have considered and documented risks above - [ ] All Paperclip CI and security gates are green - [ ] Greptile is 5/5 with no open actionable findings - [x] I will address all Greptile and reviewer comments before merge ## Stack - Position: 3 of 5 overall; lowest of 3 currently unmerged - Base: `master` - Previous: [#12590](https://github.com/paperclipai/paperclip/pull/12590), qualified Claude ACPX runtime — merged - Next: [#12592](https://github.com/paperclipai/paperclip/pull/12592), generalized Codex executor, task experience, and developer SDKs --------- Co-authored-by: Dev Agent <dev@paperclip.ing>	2026-08-31 14:38:38 -05:00