Commit Graph
23 Commits
Author SHA1 Message Date
scotttong 4d82f5eaea copy: unify user-facing "company" wording to "organization" (#12243) 2026-08-27 01:04:55 -07:00
Michael NguyenandClaude Fable 5 773a9dade6 fix: preserve plugin detail-tab deep links and bridge the real JSX runtime (#11826)
## Thinking Path

> - Paperclip is the open source app people use to manage AI agents for
work
> - Plugins can contribute detail tabs to project pages, and plugin UI
bundles render through a host-provided React bridge
> - A cold load of a plugin-tab deep link redirected to the Issues tab,
because the plugin-slots query is disabled until the project's company
resolves and a disabled query reports `isLoading: false`
> - The redirect made shareable plugin-tab URLs and browser
reload/back/forward unreliable for every detail-tab plugin
> - Separately, the bridge shim rebuilt `jsx`/`jsxs` on top of
`createElement(type, { children })`, which drops React's static-children
marking and floods the dev console with "unique key" warnings from
plugin components
> - This pull request holds the tab decision on a skeleton until
contributions actually load, and exposes the host's real
`react/jsx-runtime` on the plugin bridge with the old shim as fallback
> - The benefit is that plugin detail tabs survive direct open, reload,
back, and forward, and plugin surfaces stop emitting spurious React key
warnings

## Linked Issues or Issue Description

**What happened**

Opening a project URL with `?tab=plugin:<publisher>.<plugin>:<tab>`
directly, or reloading while on such a tab, redirected to the project's
Issues tab even though the plugin contribution was registered and
available. The dev console also showed "each child in a list should have
a unique key" warnings pointing at plugin-rendered components.

**Expected behavior**

Direct open, reload, back, and forward keep the requested plugin tab
when its contribution is available. When the contribution truly does not
exist, the page still falls back safely to the Issues tab. Plugin
components with static multi-child JSX render without React key
warnings.

**Steps to reproduce**

1. Install a plugin that contributes a project detail tab.
2. Open the tab, copy the URL, and open it in a new browser tab (or
press reload).
3. Observe the redirect to `/projects/<ref>/issues` before the
plugin-slots query has ever run.
4. With React in development mode, open any plugin tab that renders
sibling elements and observe key warnings in the console.

**Version or commit**

Reproduced on `master` at `733ffbf7c`.

**Deployment mode**

Local development instance (managed runtime).

## What Changed

- `ui/src/pages/ProjectDetail.tsx`: the plugin-tab fallback now waits
until the company is resolved and the plugin-slots query has finished
before it decides. While the decision is pending it renders the detail
`PageSkeleton` instead of navigating away. Loading a project that fails
to load still shows the error state.
- `ui/src/plugins/bridge-init.ts`: the plugin bridge registry now
exposes the host's real `react/jsx-runtime` module as `reactJsxRuntime`.
- `ui/src/plugins/slots.tsx`: the `react/jsx-runtime` shim served to
plugin bundles prefers the bridged runtime's `jsx`/`jsxs`/`Fragment` and
keeps the previous `createElement`-based implementation as a fallback.
- `ui/src/pages/ProjectDetail.test.tsx`: new tests for cold deep links —
pending slots query, disabled query before company resolution,
registered tab render, and fallback when the tab is not contributed.
- `ui/src/plugins/bridge.test.ts`: new tests that the bridge exposes the
real runtime and that unkeyed static children render through it without
key warnings.

## Verification

- `npx vitest run src/pages/ProjectDetail.test.tsx
src/plugins/bridge.test.ts` in `ui/` — 2 files, 18 tests, all pass.
- `pnpm check:token-gates` — all gates clean.
- Manual: open a project with a plugin detail tab, switch to the tab,
reload the browser, use back/forward, and open the URL in a fresh tab.
The tab persists. Remove the plugin and open the same URL. The page
falls back to the Issues tab.

## Risks

- Low risk. The fallback redirect still happens whenever contributions
finish loading without the requested tab; the change only defers it
until the answer is known, so an unavailable contribution cannot get
stuck on the skeleton.
- The jsx-runtime shim keeps the old `createElement` path as a fallback
when the bridged runtime is absent, so older bridge registries keep
working.

## Model Used

- Claude (Anthropic) — `claude-fable-5`, extended thinking enabled,
agentic tool use (file edits, shell, test execution) via Claude Code.

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have searched GitHub for duplicate or similar PRs and linked
related PRs above where they exist
- [x] I have either (a) linked existing issues with `Fixes: #` / `Closes
#` / `Refs #` OR (b) described the issue in-PR following the relevant
issue template
- [x] I have not referenced internal/instance-local Paperclip issues or
links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip`
URLs)
- [ ] My branch name describes the change (e.g. `docs/...`, `fix/...`)
and contains no internal Paperclip ticket id or instance-derived details
— *the branch predates this rule; squash-merge keeps the branch name off
`master`*
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [x] I have updated relevant documentation to reflect my changes
(code-level docs; no user-facing docs affected)
- [x] I have considered and documented any risks above
- [ ] All Paperclip CI gates are green — *pending first CI run on this
PR*
- [ ] Greptile is 5/5 with no open P2s, recommendations, or follow-ups —
*pending first review*
- [x] I will address all Greptile and reviewer comments before
requesting merge

🤖 Generated with [Claude Code](https://claude.com/claude-code)

Co-authored-by: Claude Fable 5 <noreply@anthropic.com>
2026-08-20 23:22:49 -07:00
Nicky LeachandPaperclip 01b51dc0e5 fix(runtime): stop Live badge and Working shimmer after task teardown (#10985)
## Thinking Path

> - Paperclip is the open source app people use to manage AI agents for
work.
> - The task list and the chat views show a Live badge and a Working
shimmer for an issue that has an active run.
> - A finished task kept the Live badge and the Working shimmer after
the run ended and the sandbox stopped.
> - The user interface reads run liveness from the
`heartbeat_runs.status` row. The run finalizer writes the terminal
status in a step that is separate from the agent `status=done` update.
When the sandbox or the run process stops between the two steps,
`heartbeat_runs.status` stays `running` forever.
> - A run row that stays `running` makes a finished task look
perpetually Live, and the user interface has no guard for an issue that
already reached a terminal status.
> - This pull request closes the invariant "environment lease released
implies the run is terminal" on the server, and adds a user interface
guard that suppresses live state for a terminal issue.
> - The benefit is that a finished task stops showing Live and Working,
both at the source (the run row) and at the surface (the badge and the
shimmer).

## Linked Issues or Issue Description

**Bug description**

- A completed task kept the Live badge and the Working shimmer after its
run ended and the sandbox was torn down.

**Steps to reproduce**

- Run an agent task to completion. Let the sandbox tear down while the
run finalizer is between the `status=done` update and the terminal
run-status write.
- Open the task list or the chat view for the finished task.

**Expected behavior**

- A finished task shows no Live badge and no Working shimmer.

**Actual behavior (before this change)**

- The finished task showed the Live badge and the Working shimmer
because its `heartbeat_runs.status` row stayed `running`.

This pull request supersedes the two separate pull requests #10954
(frontend) and #10955 (backend). It carries all of their changes for the
same race.

## What Changed

Server:

- Run teardown terminalizes a still-running or still-queued run before
it releases the environment lease. It writes `succeeded` when the issue
already reached `done`, `cancelled` when the issue is `cancelled`, and
`interrupted` otherwise. It never overwrites a status that another path
already made terminal.
- The recovery stale-lock sweep terminalizes an orphaned running run to
`interrupted` after it confirms the process and the sandbox are both
gone. It requires recorded process metadata, so it never terminalizes a
live run, a queued run, or a scheduled retry.
- Each terminal transition writes a run event.
- The stale-lock sweep continues and clears the lock when the audit
write fails. It logs the failure loudly.
- New server tests cover both invariants.

User interface:

- A shared guard suppresses the Live badge and the Working shimmer when
the issue status is terminal.
- The guard keeps non-terminal `queued` and `running` issues live.
- The guard prefers the newest issue live-status snapshot.
- New user interface tests cover the guard and the snapshot preference.

## Verification

Server:

- `pnpm --filter @paperclipai/plugin-sdk ensure-build-deps && tsc
--noEmit` in `server/` — 0 errors.
- `pnpm --filter server test
heartbeat-run-lease-release-terminalization.test.ts
recovery-stale-issue-lock-sweep.test.ts` — 12 tests pass.

User interface:

- `pnpm --filter @paperclipai/ui typecheck` — 0 errors.
- `pnpm exec vitest run ui/src/lib/liveIssueIds.test.ts
ui/src/lib/issue-chat-messages.test.ts` — 40 tests pass.

## Risks

- Low risk. The server change only forces a still-live run row to a
terminal status when the lease releases or when the recovery sweep
confirms the process is dead. It never overwrites an existing terminal
status, and it guards the recovery path with process metadata to avoid
terminalizing a live run.
- The user interface change is additive. The guard only suppresses live
state for a terminal issue and keeps queued and running issues live.
- No database migration. No change to any external endpoint.

## Model Used

- Claude Opus 4.8 (`claude-opus-4-8`), extended thinking, tool use, and
code execution.

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have searched GitHub for duplicate or related PRs and linked
them above
- [x] I have either (a) linked existing issues with `Fixes: #` /
`Closes: #` / `Refs: #` OR (b) described the issue in-PR following the
relevant issue template
- [x] I have not referenced internal/instance-local Paperclip issues or
links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip`
URLs)
- [x] My branch name describes the change (e.g. `docs/...`, `fix/...`)
and contains no internal Paperclip ticket id or instance-derived details
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [x] All Paperclip CI gates are green
- [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups
- [x] I will address all Greptile and reviewer comments before
requesting merge

---------

Co-authored-by: Paperclip <noreply@paperclip.ing>
2026-08-07 07:23:56 -07:00
DottaandPaperclip 1fa36be353 fix(ui): use HTTP-safe clipboard copy everywhere (#10875)
## Thinking Path

> - Paperclip is the open source app people use to manage AI agents for
work.
> - Operators often open self-hosted Paperclip over plain HTTP on a LAN
or private network.
> - Browser Clipboard API writes are not reliable in that insecure
context.
> - Paperclip already has one shared helper with a legacy copy fallback,
but many current copy actions bypass it.
> - This pull request routes every core UI copy action and the
first-party workspace-diff plugin through the shared helper.
> - The benefit is consistent copy behavior on HTTPS, localhost, and
plain-HTTP private deployments.

## Linked Issues or Issue Description

Refs #3529.

This change supersedes the stale prior attempt in #3531. Current master
has more copy surfaces and a first-party plugin UI bridge that the prior
branch does not cover.

## What Changed

- Replaced direct Clipboard API writes and duplicate fallback
implementations across the current core UI with `copyTextToClipboard`.
- Added an HTTP-safe clipboard function to the plugin UI SDK and wired
the host bridge to the same implementation.
- Migrated the first-party workspace-diff plugin to the plugin SDK
clipboard function.
- Added unit coverage for native rejection fallback and plugin host
delegation.
- Added a source-level regression test that rejects new direct clipboard
writes outside the shared implementation.
- Documented the plugin UI clipboard function.

## Verification

- `NODE_ENV=test pnpm exec vitest run ...` for 14 affected suites: 164
tests passed.
- `pnpm exec vitest run tests/ui-clipboard.test.ts` in
`packages/plugins/sdk`: 1 test passed.
- `NODE_ENV=test pnpm -r typecheck`: passed for 31 workspace projects.
- `NODE_ENV=test pnpm test:run`: passed.
- `NODE_ENV=production pnpm build`: passed.
- `pnpm check:token-gates`: passed with all gates clean.

## Risks

Low risk. Secure contexts still use the modern Clipboard API. Plain HTTP
and rejected modern writes use the existing `execCommand("copy")`
fallback. That API is deprecated, but it is the compatibility path
required for insecure contexts. The change has no schema, API, or visual
design effect.

> For core feature work, check [`ROADMAP.md`](ROADMAP.md) first and
discuss it in `#dev` before opening the PR. Feature PRs that overlap
with planned core work may need to be redirected — check the roadmap
first. See `CONTRIBUTING.md`.

## Model Used

OpenAI Codex, `gpt-5.6-sol`. The runtime did not expose a context-window
size. Reasoning, tool use, repository editing, test execution, and
GitHub CLI access were enabled.

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have searched GitHub for duplicate or related PRs and linked
them above
- [x] I have either (a) linked existing issues with `Fixes: #` / `Closes
#` / `Refs #` OR (b) described the issue in-PR following the relevant
issue template
- [x] I have not referenced internal/instance-local Paperclip issues or
links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip`
URLs)
- [x] My branch name describes the change (e.g. `docs/...`, `fix/...`)
and contains no internal Paperclip ticket id or instance-derived details
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [x] All Paperclip CI gates are green
- [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups
- [x] I will address all Greptile and reviewer comments before
requesting merge

---------

Co-authored-by: Paperclip <noreply@paperclip.ing>
2026-08-05 10:45:08 -05:00
Nicky Leach 564870020b Exclude archived projects from the default project list route (#10146) 2026-07-24 07:19:58 -07:00
Dotta 8b04147ca4 perf(ui): stop polling the event-sourced company live-runs list (#9701)
## Thinking Path

> - Paperclip is the open source app people use to manage AI agents for
work
> - Its web UI keeps live views fresh with a live-events websocket plus
React Query, and #9627 began replacing polling with event-sourcing
(pushing data into the cache)
> - After the churn fixes (#9624) and #9627 shipped, a long-lived tab's
memory footprint was still climbing, so I re-profiled with the Chrome
DevTools MCP
> - The dominant remaining churn is React Query re-arming a polled
query's `refetchInterval` timer on **every** observer notification — and
our live-event handlers `setQueryData(liveRuns(companyId))` on nearly
every event, so each pushed update re-arms every `liveRuns` observer's
timer (the sidebar is always mounted)
> - #9627 event-sourced the live-runs data but left the now-redundant
`refetchInterval` in place, so we did half the fix — the poll is pure
waste and the thing re-arming timers
> - This pull request removes `refetchInterval` from the event-sourced
company live-runs queries so the frequent cache writes have no timer to
re-arm
> - The benefit is that the steady-state timer churn on the
most-observed resource collapses, so the off-heap footprint stops
climbing

## Linked Issues or Issue Description

No public GitHub issue exists; describing inline per CONTRIBUTING.md →
"Link Issues or Describe Them In-PR", following the bug report template.
Continues #9569 / #9624 / #9627.

**What happened?**

With the earlier fixes deployed, a browser tab left open on the app kept
growing its memory footprint. MCP profiling showed ~100+ `setInterval`
create/clear cycles per 5s on an aged tab (vs ~16 fresh), all from React
Query's refetch-interval timers being re-armed on every `setQueryData`
to the frequently-written `liveRuns(companyId)` query.

**Expected behavior**

A resource whose data is pushed (event-sourced) should not also poll;
cache writes should not repeatedly re-arm interval timers. Idle tabs
should hold a bounded footprint.

**Steps to reproduce**

Open a tab with agents streaming, leave it open, and instrument
`setInterval`/`clearInterval`: the churn rate climbs and traces to
`QueryObserver.updateTimers` (`refetchInterval`) for `liveRuns`,
re-armed by every live-event cache write.

**Paperclip version or commit**

Branch `perf/drop-live-runs-refetch-interval`, off `master` (after
#9627).

**Deployment mode**

Local dev (`pnpm dev`), web UI. Core UI live-updates plumbing; not
adapter-specific.

## What Changed

- Set `refetchInterval: false` on every site that polls the **plain**
`queryKeys.liveRuns(companyId)` query (event-sourced by #9627):
`Sidebar`, `SidebarAgents`, `Issues`, `Inbox`, `IssueDetail`
(companyLiveRuns), `ProjectDetail` (×2), `Routines`,
`ExecutionWorkspaceDetail`, `bridge-init`.
- Removed the now-unused `useVisibilityRefetchInterval` interval
vars/imports in `Issues`, `Inbox`, `IssueDetail`.
- **Left variant-key sites polling on purpose** — `Agents` page
(`[...liveRuns, "agents-page"]`) and `ActiveAgentsPanel` (`[...liveRuns,
scope, …]`) are NOT event-sourced by #9627 (different exact cache key),
so dropping their poll would make them stale. Those are a later phase.
- Freshness for the converted queries now comes from event-sourcing
(#9627) + its reconnect reconcile; the initial mount fetch and cross-tab
publish (`usePublishSharedQueryData`) still happen.

## Verification

- MCP profiling identified the churn: the single churning callback is
React Query's `refetchInterval` timer, re-armed by
`setQueryData(liveRuns)` on live events.
- `vitest`: all affected suites pass (`Sidebar`, `SidebarAgents`,
`Issues`, `Inbox`, `IssueDetail`, `ProjectDetail`, `Routines`,
`ExecutionWorkspaceDetail`, `LiveUpdatesProvider`) — 153 tests.
- Updated two `SidebarAgents` linger-window tests: they advanced fake
timers to the *exact* linger-expiry boundary and had relied on
poll-induced re-renders to flush. The linger self-schedules its own
`setTimeout`, so the tests now cross the boundary with a small margin +
an explicit flush (no product change).
- `tsc -b` clean.
- End-to-end footprint reduction should be re-measured against a rebuilt
bundle with the same instrumentation.

## Risks

Low, client-only.
- `liveRuns(companyId)` freshness now depends entirely on event-sourcing
+ reconnect reconcile (both from #9627). If an event path is missed, the
reconnect handler refetches once; durable replay is a planned later
phase.
- Variant-key run lists (Agents page, ActiveAgentsPanel) are unchanged
and still poll, so they don't regress.
- Issue-scoped run queries (`issues.liveRuns/activeRun/runs`) are
**not** touched here — they aren't event-sourced yet and are a separate
phase.

## Model Used

- **Provider:** Anthropic, via the Claude Code CLI.
- **Model:** Claude Opus 4.8 (`claude-opus-4-8`).
- **Reasoning mode:** Extended thinking enabled.
- **Capabilities used:** tool use (shell, file editing), and the Chrome
DevTools MCP to re-profile the live instance and pinpoint the
`refetchInterval` timer churn.

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work (a perf/plumbing change)
- [x] I have searched GitHub for duplicate or related PRs and linked
them above (continues #9627; no duplicates)
- [x] I have either (a) linked existing issues with `Fixes: #` / `Closes
#` / `Refs #` OR (b) described the issue in-PR following the relevant
issue template
- [x] I have not referenced internal/instance-local Paperclip issues or
links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip`
URLs)
- [x] My branch name describes the change (e.g. `docs/...`, `fix/...`)
and contains no internal Paperclip ticket id or instance-derived details
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [x] I have considered and documented any risks above
- [ ] I have updated relevant documentation to reflect my changes (N/A —
no user-facing docs; rationale documented inline)
- [x] All Paperclip CI gates are green
- [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups
- [x] I will address all Greptile and reviewer comments before
requesting merge

🤖 Generated with [Claude Code](https://claude.com/claude-code)
2026-07-16 11:42:04 -05:00
DottaandPaperclip 176645187c Fix request storm polling and issue-list coalescing (#9190)
## Thinking Path

> - Paperclip is the open source app people use to manage AI agents for
work
> - The board UI keeps issue, agent, activity, and run state fresh
through polling across several pages and sidebar surfaces
> - When multiple components or browser tabs poll the same company data
at the same time, the API can receive bursts of duplicate issue-list
requests
> - Those duplicate requests increase database and server load without
returning meaningfully different data
> - This pull request adds server-side compression/coalescing plus
client-side visibility-aware and cross-tab shared polling
> - The benefit is lower request volume during normal board usage while
preserving fresh UI data for active users

## Linked Issues or Issue Description

No exact public GitHub issue was found for this request.

Problem:
- The board can issue redundant polling requests for the same issue-list
data from multiple UI surfaces and tabs.
- In busy operator sessions, those bursts can trigger request-storm
behavior and unnecessary issue-list load.
- Expected behavior is to reuse identical in-flight work server-side and
reduce hidden-tab or duplicate-tab polling client-side while preserving
normal refresh behavior.

Related public context found during duplicate search:
- #8206 covers a different board UI 404-storm scope.
- #5165 covers separate issue-list behavior around page-size truncation.

## What Changed

- Added API compression middleware foundation and a company/created-at
index for heartbeat run access.
- Added server-side issue-list request storm detection and identical
in-flight request coalescing.
- Added UI fetch metadata, visibility-aware polling, and request
deduplication for issue/activity/client calls.
- Added cross-tab shared polling primitives and wired them into the
sidebar, inbox, dashboard, issue, project, routine, and agent surfaces.
- Resolved the latest `master` migration collision by keeping upstream
`0140_built_in_managed_resources.sql` and renumbering this branch's
heartbeat-run index migration to
`0141_heartbeat_runs_company_created_at_index.sql`; the SQL uses `CREATE
INDEX IF NOT EXISTS` for idempotency.
- Stabilized server heartbeat cleanup tests exposed by the PR check
matrix.
- Fixed the Greptile compression follow-up by weakening strong ETags on
encoded JSON responses and bypassing compression for streamed/download
responses.

## Verification

- `pnpm exec vitest run ui/src/components/IssuesList.test.tsx
ui/src/pages/Inbox.test.tsx` — passed after resolving the latest
`master` conflict in `IssuesList.tsx` and updating the 200-result cap
expectations.
- `pnpm check:token-gates` — passed after the UI conflict resolution.
- `jq -e '.entries | length as $n | (map(.idx) | unique | length == $n)
and (map(.tag) | unique | length == $n)'
packages/db/src/migrations/meta/_journal.json` — passed after
renumbering the migration to `0141`.
- `pnpm exec vitest run server/src/__tests__/api-compression.test.ts` -
passed after the compression follow-up.
- `pnpm exec vitest run
server/src/__tests__/issue-list-assignee-filter-routes.test.ts` - passed
after the compression follow-up.
- `pnpm --filter @paperclipai/server typecheck` - passed after the
compression follow-up.
- Greptile Review for head `8dbddac41ec273fda404100b4981ddb912fad57b` -
passed after the latest conflict/migration fix; all Greptile review
threads are resolved.
- `pnpm exec vitest run server/src/__tests__/api-compression.test.ts
server/src/__tests__/issue-list-assignee-filter-routes.test.ts
ui/src/api/client.test.ts ui/src/api/issues.test.ts
ui/src/lib/polling.test.ts ui/src/lib/cross-tab-poll.test.ts
ui/src/pages/Inbox.test.tsx ui/src/components/SidebarProjects.test.tsx
ui/src/components/SidebarAccountMenu.test.tsx
ui/src/lib/issueDetailCache.test.ts` — passed.
- `pnpm exec vitest run ui/src/api/client.test.ts` — passed.
- `pnpm exec vitest run ui/src/pages/Inbox.test.tsx
ui/src/components/SidebarProjects.test.tsx
ui/src/components/SidebarAccountMenu.test.tsx
ui/src/lib/issueDetailCache.test.ts` — passed.
- `pnpm exec vitest run
server/src/__tests__/heartbeat-worktree-suppression.test.ts` — passed.
- `pnpm exec vitest run
server/src/__tests__/low-trust-red-team-routes.test.ts` — passed.
- `pnpm exec vitest run
server/src/__tests__/heartbeat-workspace-finalize-branch.test.ts` —
passed.
- `pnpm --filter @paperclipai/ui typecheck` — passed.
- `pnpm --filter @paperclipai/server typecheck` — passed.
- GitHub PR checks for head `8dbddac41ec273fda404100b4981ddb912fad57b`:
all GitHub Actions/status checks passed; Greptile, Superagent, Socket,
Snyk, build, typecheck/release registry, general tests, serialized
server suites, e2e, canary dry run, policy, and commitperclip review are
green; Storybook visual regression and security-review were
skipped/neutral by policy.
- Confirmed this branch does not include `pnpm-lock.yaml` or
`.github/workflows` changes.

## Risks

- Medium risk: issue-list coalescing changes request timing and cache
semantics for a hot API path.
- Medium risk: cross-tab polling uses browser coordination primitives,
so older or unusual browser environments need fallback behavior to stay
correct.
- Low migration risk: the new index migration is ordered after current
`master` and uses `CREATE INDEX IF NOT EXISTS`.

> For core feature work, check [`ROADMAP.md`](ROADMAP.md) first and
discuss it in `#dev` before opening the PR. Feature PRs that overlap
with planned core work may need to be redirected — check the roadmap
first. See `CONTRIBUTING.md`.

## Model Used

OpenAI Codex coding agent, GPT-5-based model, tool-enabled with
shell/git execution. Exact hosted deployment identifier and
context-window size were not surfaced in the agent runtime.

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have searched GitHub for duplicate or related PRs and linked
them above
- [x] I have either (a) linked existing issues with `Fixes: #` / `Closes
#` / `Refs #` OR (b) described the issue in-PR following the relevant
issue template
- [x] I have not referenced internal/instance-local Paperclip issues or
links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip`
URLs)
- [x] My branch name describes the change (e.g. `docs/...`, `fix/...`)
and contains no internal Paperclip ticket id or instance-derived details
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [x] All Paperclip CI gates are green
- [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups
- [x] I will address all Greptile and reviewer comments before
requesting merge

---------

Co-authored-by: Paperclip <noreply@paperclip.ing>
2026-07-09 17:38:34 -05:00
ad961227f5 feat(secrets): add user-specific runtime secrets (#8825)
## Thinking Path

> - Paperclip is the open source app people use to manage AI agents for
work.
> - Agent runs often need provider credentials, API tokens, and other
environment-bound secrets.
> - Company-level secrets work for shared credentials, but they do not
model values that should differ by human operator.
> - Without a user-scoped model, a run can dispatch without knowing
whether the responsible human has supplied the needed value.
> - Paperclip also needs run attribution to make those user-scoped
runtime checks deterministic and auditable.
> - This pull request adds user-specific secret definitions, per-user
values, environment bindings, responsible-user attribution, and runtime
resolution gates.
> - The benefit is that teams can define the secret once, let each user
provide their own value, and block runs before dispatch when required
user secrets or active definitions are unavailable.

## Linked Issues or Issue Description

Refs #224
Refs #6057

This PR implements user-specific secret support as a core
secret-management capability rather than a one-off adapter setting. It
is related to existing public work on company secrets UI and runtime
secret refs, but is distinct because the value is owned by the
responsible user and resolved at run dispatch time.

Related PR search before opening found existing secrets work such as
#1550, #8256, #8614, #8634, and #8647; none of those add the full
user-secret definition/value/runtime gate covered here.

## What Changed

- Added user-secret definitions and per-user "My secrets" values,
keeping stored values out of access metadata.
- Added `user_secret_ref` environment bindings and UI affordances to
pick them alongside existing secret refs.
- Added responsible-user runtime resolution so user-secret refs resolve
against the human responsible for the run.
- Added pre-dispatch missing-secret gates so runs fail before adapter
dispatch when required user values are absent or definitions are
inactive.
- Added low-trust allowlist hardening for user-secret runtime access.
- Added issue, routine, run, and agent API key responsible-user
attribution and fail-closed dispatch behavior when attribution cannot be
resolved.
- Added denial-copy mapping so responsible-user authorization failures
surface as actionable run outcomes instead of opaque setup failures.
- Added OpenAPI documentation for the user-secret routes.
- Rebases cleanly on current `master`; migrations were renumbered
incrementally as `0128_user_specific_secrets`,
`0129_agent_api_key_responsible_user`, and
`0130_run_responsible_user_invariant` after upstream `0126`/`0127`
migrations.
- Removed previously committed local design screenshots so the PR
contains code/docs/tests only.

## Verification

- PASS: PR head `2527febd106bcf3ca264ca0da7fca491084192d6` is based on
`paperclipai/paperclip:master`.
- PASS: `git diff --check`
- PASS: `git diff --name-only public/master...HEAD | rg
'^(pnpm-lock\\.yaml|\\.github/workflows/|screenshots/)' || true`
produced no files.
- PASS: migration journal audit confirmed unique indexes through `130`
with tail entries `0126_issue_comment_derived_attribution`,
`0127_environment_custom_images_instance_scoped`,
`0128_user_specific_secrets`, `0129_agent_api_key_responsible_user`, and
`0130_run_responsible_user_invariant`.
- PASS: `pnpm --filter @paperclipai/ui typecheck`
- PASS: `pnpm --filter @paperclipai/server typecheck`
- PASS: `pnpm --filter @paperclipai/server exec vitest run
src/__tests__/heartbeat-responsible-user-invariant.test.ts`
- PASS: `pnpm --filter @paperclipai/server exec vitest run
src/__tests__/heartbeat-active-run-output-watchdog.test.ts
src/__tests__/heartbeat-stale-queue-invalidation.test.ts
src/__tests__/heartbeat-workspace-finalize-branch.test.ts
src/__tests__/issue-monitor-scheduler.test.ts`
- PASS: `pnpm --filter @paperclipai/server exec vitest run
src/__tests__/heartbeat-comment-wake-batching.test.ts
src/__tests__/heartbeat-retry-scheduling.test.ts
src/__tests__/heartbeat-accepted-plan-workspace-refresh.test.ts
src/__tests__/heartbeat-plugin-environment.test.ts`
- PASS: `pnpm --filter @paperclipai/server exec vitest run
src/__tests__/low-trust-red-team-routes.test.ts`
- PASS: `pnpm --filter @paperclipai/server exec vitest run
src/__tests__/secrets-service.test.ts` (55 tests)
- PASS: `pnpm vitest run server/src/__tests__/secrets-routes.test.ts
server/src/__tests__/secrets-service.test.ts` (89 tests after final
Greptile cleanup fixes)
- PASS: `pnpm --filter @paperclipai/server exec vitest run
src/__tests__/heartbeat-issue-liveness-escalation.test.ts` (17 tests
after the final rebase CI fix)
- PASS: focused server Vitest batches covering heartbeat recovery,
project env, plugin env, routines, low-trust, pipelines, monitors,
watchdog, and stale queue paths.
- PASS: GitHub checks are green on
`2527febd106bcf3ca264ca0da7fca491084192d6`, including Typecheck +
Release Registry, Build, General tests, serialized server suites, e2e,
Canary Dry Run, verify, security checks, and Greptile Review.
- PASS: Greptile Review completed successfully on
`2527febd106bcf3ca264ca0da7fca491084192d6` with Confidence Score 5/5,
and GraphQL review-thread audit returned zero unresolved non-outdated
threads.

## Risks

- Runtime behavior now depends on a run having a correct responsible
user; missing or incorrect responsibility assignment can block runs
before adapter dispatch.
- `user_secret_ref` bindings intentionally expose metadata without
values, but UI/API callers may need to handle the new binding kind
explicitly.
- External secret providers and IAM policies are not automatically
provisioned by this PR; operators still need to configure provider-side
access for non-local vaults.
- The PR is broad across db/shared/server/UI/runtime paths, so release
validation should include both API and UI secret workflows before merge.
- The migration renumbering is intentionally incremental after upstream
migrations; the branch migrations use guarded
column/table/index/constraint creation so users who tested the older
draft numbering should not hit duplicate DDL for the existing objects.

> For core feature work, check [`ROADMAP.md`](ROADMAP.md) first and
discuss it in `#dev` before opening the PR. Feature PRs that overlap
with planned core work may need to be redirected — check the roadmap
first. See `CONTRIBUTING.md`.

## Model Used

OpenAI Codex, GPT-5-based coding agent (`gpt-5`), Codex local adapter
with shell/tool use and code execution. Context window and internal
reasoning mode are not exposed by the runtime.

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have searched GitHub for duplicate or related PRs and linked
them above
- [x] I have either (a) linked existing issues with `Fixes: #` / `Closes
#` / `Refs #` OR (b) described the issue in-PR following the relevant
issue template
- [x] I have not referenced internal/instance-local Paperclip issues or
links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip`
URLs)
- [x] My branch name describes the change (e.g. `docs/...`, `fix/...`)
and contains no internal Paperclip ticket id or instance-derived details
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [x] All Paperclip CI gates are green
- [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups
- [x] I will address all Greptile and reviewer comments before
requesting merge

---------

Co-authored-by: Paperclip <noreply@paperclip.ing>
Co-authored-by: Claude Opus 4.8 <noreply@anthropic.com>
2026-07-05 05:58:20 -05:00
DottaandPaperclip 76c88e5855 [codex] Move instance settings under company settings (#7680)
## Thinking Path

> - Paperclip is the open source app people use to manage AI agents for
work
> - Operators manage both company-scoped configuration and
instance-level runtime/admin settings from the board UI
> - Instance settings previously lived as their own top-level sidebar
area, separate from the company settings context operators already use
> - That split made settings navigation feel heavier and made instance
configuration less discoverable from the settings tab
> - This pull request moves instance settings under company settings
while preserving the existing instance settings routes and plugin/admin
surfaces
> - The benefit is a smaller primary sidebar and a more coherent
settings hierarchy for operators

## Linked Issues or Issue Description

- Refs #338
- Internal: PAP-10491, PAP-10538

## What Changed

- Moved instance settings navigation under the company settings area.
- Added route helpers and sidebar entries for nested instance settings
paths.
- Updated plugin/admin settings routes to use the company settings
instance scope.
- Preserved legacy instance-settings bookmarks through compatibility
redirects that keep the active company prefix.
- Updated focused UI and plugin tests for the new navigation shape.
- Stabilized the process-loss retry test that was failing the serialized
server shard in CI.
- Rebased the branch onto current `paperclipai/paperclip` `master` and
pushed the current head.

## Verification

- `pnpm exec vitest run
ui/src/components/CompanySettingsSidebar.test.tsx
ui/src/components/access/CompanySettingsNav.test.tsx
ui/src/lib/instance-settings.test.ts
ui/src/components/InstanceSidebar.test.tsx
ui/src/components/Layout.test.tsx
ui/src/components/SidebarAccountMenu.test.tsx
ui/src/pages/PluginPage.test.tsx ui/src/plugins/bridge.test.ts
packages/shared/src/validators/plugin.test.ts`
- `pnpm exec vitest run ui/src/lib/instance-settings.test.ts
ui/src/components/CompanySettingsSidebar.test.tsx
ui/src/components/access/CompanySettingsNav.test.tsx
ui/src/components/Layout.test.tsx ui/src/plugins/bridge.test.ts`
- `pnpm exec vitest run
server/src/__tests__/heartbeat-process-recovery.test.ts -t "queues
exactly one retry when the recorded local pid is dead"`
- `pnpm test:run:serialized -- --shard-index 0 --shard-count 4`
- GitHub PR checks are green on head
`fe7b0955169dcae55cbe10889c1876a70ab0b80c`, including `verify`, `General
tests (server)`, all serialized server shards, build, e2e, policy,
security checks, and Greptile.
- Confirmed the PR diff does not include `pnpm-lock.yaml` or
`.github/workflows` changes.

## Risks

- Medium UI/navigation risk: instance settings links are intentionally
moving under company settings, so stale external bookmarks to legacy
paths rely on the compatibility routing in this branch.
- Low test-only risk from the CI stabilization commit: it makes the
recovery assertion select the actual retry run by `retryOfRunId` instead
of whichever non-original run appears first.
- No database migrations.
- No dependency lockfile or workflow changes.

> For core feature work, check [`ROADMAP.md`](ROADMAP.md) first and
discuss it in `#dev` before opening the PR. Feature PRs that overlap
with planned core work may need to be redirected — check the roadmap
first. See `CONTRIBUTING.md`.

## Model Used

- OpenAI Codex coding agent based on GPT-5, with shell/tool execution in
a local repository worktree. Exact context window was not exposed by the
runtime.

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have searched GitHub for duplicate or related PRs and linked
them above
- [x] I have either (a) linked existing issues with `Fixes: #` / `Closes
#` / `Refs #` OR (b) described the issue in-PR following the relevant
issue template
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [ ] If this change affects the UI, I have included before/after
screenshots
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [x] All Paperclip CI gates are green
- [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups
- [x] I will address all Greptile and reviewer comments before
requesting merge

---------

Co-authored-by: Paperclip <noreply@paperclip.ing>
2026-06-07 17:23:53 -05:00
2e74d32871 PAP-10430: split Issue-to-Task copy migration (#7651)
## Thinking Path

> - Paperclip is the open source app people use to manage AI agents for
work.
> - The board UI is the operator surface where users create, assign,
monitor, and review work items.
> - The product language is moving toward "tasks" for user-facing work
items while the internal API and database still use "issues".
> - PR #7543 bundled this copy migration with broader
information-architecture work, which made the branch too large for
Greptile review.
> - This pull request peels the Issue-to-Task copy migration into a
smaller, independently reviewable change.
> - The benefit is clearer user-facing terminology, less agent confusion
via the Paperclip skill note, and a smaller PR that Greptile can review.

## Linked Issues or Issue Description

Refs #7645
Refs #7543
Refs PAP-10430

This PR was split out of #7543 so the Issue-to-Task copy migration can
be reviewed separately and the remaining IA PR can fall under Greptile's
file limit.

## What Changed

- Preserves Scott Tong's original `PAP-57` copy-only commit, with author
and co-author credit intact, to rename user-facing "Issues" copy to
"Tasks" across the UI while keeping routes/API/internal symbols as
`issue`.
- Updates onboarding and release-smoke browser selectors from `Create &
Open Issue` to `Create & Open Task`.
- Adds a terminology note to `skills/paperclip/SKILL.md` clarifying that
task and issue refer to the same Paperclip work item.
- Resolves the only cherry-pick conflict by keeping current search
artifacts support and changing visible search copy to "tasks".

## Verification

- `pnpm --filter @paperclipai/ui build` passed.
- `NODE_ENV=test pnpm exec vitest run
ui/src/components/IssuesList.test.tsx ui/src/components/Sidebar.test.tsx
ui/src/components/NewIssueDialog.test.tsx
ui/src/pages/IssueDetail.test.tsx` passed: 4 files, 66 tests.
- `git diff --check origin/master...HEAD` passed.
- Diff is 80 files, below Greptile's 100-file limit.
- Before/after UI copy examples: "Issues" -> "Tasks", "New Issue" ->
"New Task", "Create & Open Issue" -> "Create & Open Task".

## Risks

- Medium copy-risk: this intentionally changes user-facing terminology
broadly while keeping internal issue identifiers and routes unchanged.
- Some docs and APIs still say `issue`; the skill note clarifies this so
agents do not treat task and issue as separate entities.
- Browser-level visual validation is expected from CI because this local
container is missing usable browser dependencies.

> For core feature work, check [`ROADMAP.md`](ROADMAP.md) first and
discuss it in `#dev` before opening the PR. Feature PRs that overlap
with planned core work may need to be redirected — check the roadmap
first. See `CONTRIBUTING.md`.

## Model Used

Scott Tong authored the original `PAP-57` copy migration, assisted by
Claude Opus 4.8 and Paperclip agents per the preserved commit metadata.
Codex / GPT-5-class coding agent with shell, GitHub CLI, and repository
access performed the PR split, conflict resolution, skill note, and
verification.

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have searched GitHub for duplicate or related PRs and linked
them above
- [x] I have either (a) linked existing issues with `Fixes: #` / `Closes
#` / `Refs #` OR (b) described the issue in-PR following the relevant
issue template
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [x] If this change affects the UI, I have included before/after
screenshots
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [x] All Paperclip CI gates are green
- [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups
- [x] I will address all Greptile and reviewer comments before
requesting merge

---------

Co-authored-by: scotttong <scott.tong@gmail.com>
Co-authored-by: Claude Opus 4.8 <noreply@anthropic.com>
Co-authored-by: Paperclip <noreply@paperclip.ing>
2026-06-06 10:10:01 -05:00
ece8a51e22 [codex] Bundle local branch fixes from PAP-10032 (#6604)
## Thinking Path

> - Paperclip orchestrates AI agents for zero-human companies.
> - This branch accumulated multiple already-tested control-plane,
adapter runtime, invite, workspace, plugin, and UI quality fixes on the
primary Paperclip checkout.
> - `origin/master` advanced while those commits were still local, so
the branch needed to be preserved and reconciled before review.
> - Splitting the branch commit-by-commit against the new base produced
overlapping conflicts with recently merged upstream PRs.
> - This pull request keeps the remaining branch as one standalone PR
because the final diff is 38 files after removing screenshot artifacts,
under Greptile's 100-file cap, and can be merged independently after
review.
> - The benefit is that none of the local work is lost, the branch is
now based on current `origin/master`, and reviewers can evaluate the
reconciled changes in one place.

## What Changed

- Merged the local accumulated branch with current `origin/master` and
resolved the invite-flow overlaps from the newer upstream companies
query helper.
- Preserved the local fixes for invite existing-member behavior, invite
link copy fallback, reusable workspace selection, worktree auth, static
SPA fallback, markdown wrapping, plugin slot registration, cloud
upstream UX/server polish, project sorting, and related tests.
- Removed screenshot artifacts from the PR per review request.
- Kept the PR under the requested file limit: 38 files changed, with no
`pnpm-lock.yaml` or `.github/workflows/*` changes.

## Verification

- `NODE_ENV=test pnpm exec vitest run
ui/src/pages/CompanyInvites.test.tsx ui/src/pages/InviteLanding.test.tsx
ui/src/pages/Projects.test.tsx ui/src/plugins/slots.test.ts
ui/src/components/MarkdownBody.test.tsx
server/src/__tests__/invite-accept-existing-member.test.ts
server/src/__tests__/static-index-html.test.ts
server/src/__tests__/execution-workspaces-service.test.ts
server/src/__tests__/better-auth.test.ts
server/src/__tests__/worktree-config.test.ts`
- `NODE_ENV=test pnpm --filter @paperclipai/ui typecheck`
- `NODE_ENV=test pnpm --filter @paperclipai/server typecheck`
- Confirmed `git diff --name-only origin/master...HEAD | wc -l` is `38`.
- Confirmed no PR diff entries match `pnpm-lock.yaml`,
`.github/workflows/*`, or `screenshots/*`.

## Risks

- Medium review risk because this is a bundled rescue PR rather than
several narrow feature PRs.
- Invite flow and company cache behavior overlapped with newer upstream
changes; the merge resolution intentionally keeps the shared
`companiesListQueryOptions` helper while preserving local
existing-member invite behavior.
- Visual review evidence is no longer attached in-repo because
screenshots were removed from this PR per review request.

> For core feature work, check [`ROADMAP.md`](ROADMAP.md) first and
discuss it in `#dev` before opening the PR. Feature PRs that overlap
with planned core work may need to be redirected — check the roadmap
first. See `CONTRIBUTING.md`.

## Model Used

- OpenAI Codex, GPT-5-based coding agent, with repository tool access,
terminal execution, and git/GitHub CLI operations.

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [x] UI screenshots were intentionally removed from this PR per review
request
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [x] I will address all Greptile and reviewer comments before
requesting merge

---------

Co-authored-by: Paperclip <noreply@paperclip.ing>
Co-authored-by: Claude Opus 4.7 <noreply@anthropic.com>
Co-authored-by: CodexCoder <codexcoder@paperclip.local>
2026-05-25 07:25:26 -05:00
DottaandPaperclip 38c185fb8b [codex] Add agent permissions and controls plan (#6386)
## Thinking Path

> - Paperclip orchestrates AI agents for zero-human companies by keeping
task ownership, approvals, and operator control inside one control
plane.
> - Agent permissions and plugin-hosted company settings sit on the
boundary between autonomy and governance.
> - V1 needs scoped task assignment rules, plugin extension points, and
clearer company access surfaces without weakening company boundaries.
> - The branch builds the core authorization service, plugin SDK/host
APIs, and UI simplifications needed to support those controls.
> - Paperclip EE plugin surfaces were intentionally moved out of this
core PR per review direction, so this PR now carries only the public
core/plugin infrastructure work.
> - The latest updates preserve the PAP-9937 branch changes that belong
in this PR, remove the `design/` artifacts, and exclude the experimental
`plugin-briefs` package.
> - Greptile feedback was applied through the authorization/audit paths
and the final cleanup commit was re-reviewed at 5/5 with no unresolved
Greptile threads.
> - The benefit is safer assignment control with extension hooks for
richer permission products while preserving simple defaults for normal
operators.

## What Changed

- Added scoped task-assignment authorization decisions and routed
issue/agent assignment mutations through the authorization service.
- Added plugin SDK and host APIs for company settings slots,
authorization policy/grant management, assignment previews, and bridge
invocation scope propagation.
- Simplified core company access UI and moved advanced controls behind
plugin-provided settings surfaces.
- Added retry-now affordances for blocked issue next-step notices.
- Added protected-assignment enforcement for persisted
agent/project/issue policies, including explicit-grant fallback
behavior.
- Added incremental principal-access compatibility backfill for active
agent memberships and role-default human permission grants.
- Added the Markdown code block wrap action fix from the latest branch
changes.
- Removed `design/` artifacts from the PR and removed
`packages/plugins/plugin-briefs` from the final diff.
- Addressed Greptile feedback for plugin actor sanitization, legacy
membership handling, audit pagination, unknown grant-scope metadata, and
startup test mocks.

## Verification

- `pnpm exec vitest run server/src/__tests__/access-service.test.ts
server/src/__tests__/company-portability.test.ts` -> 2 files passed, 54
tests passed.
- `pnpm exec vitest run
server/src/__tests__/server-startup-feedback-export.test.ts
server/src/__tests__/access-service.test.ts
server/src/__tests__/company-portability.test.ts` -> 3 files passed, 62
tests passed.
- `pnpm exec vitest run
server/src/__tests__/authorization-service.test.ts
server/src/__tests__/plugin-access-authorization-host-services.test.ts
server/src/__tests__/server-startup-feedback-export.test.ts` -> 3 files
passed, 28 tests passed.
- `pnpm --filter @paperclipai/server typecheck` -> passed.
- `git diff --check` -> passed.
- `node ./scripts/check-docker-deps-stage.mjs` -> passed.
- `CI=true pnpm install --frozen-lockfile --ignore-scripts` -> passed
with no lockfile update.
- `pnpm exec vitest run
ui/src/components/MarkdownBody.interaction.test.tsx` -> 1 test passed.
- `git ls-files design packages/plugins/plugin-briefs | wc -l` -> 0.
- GitHub CI on `40cd83b53` -> all checks passed, merge state `CLEAN`.
- Greptile on `40cd83b53` -> 5/5, 102 files reviewed, 0
comments/annotations added, 0 unresolved review threads.
- Confirmed the PR diff contains no `design/`,
`packages/plugins/plugin-briefs`, `pnpm-lock.yaml`, or
`.github/workflows` changes.

## Risks

- Medium: task assignment authorization paths are behaviorally stricter
for protected/private policy data, so existing plugin-authored policies
may block assignment until explicit grants or approval flows are
configured.
- Medium: plugin-host authorization APIs expand the surface area
available to trusted plugins and need careful review for company
scoping.
- Low: startup now performs a principal-access compatibility backfill,
but the migration and runtime backfill use conflict-tolerant inserts.

> For core feature work, check [`ROADMAP.md`](ROADMAP.md) first and
discuss it in `#dev` before opening the PR. Feature PRs that overlap
with planned core work may need to be redirected — check the roadmap
first. See `CONTRIBUTING.md`.

## Model Used

- OpenAI Codex, GPT-5 coding agent, tool-enabled workflow with shell,
git, and GitHub CLI access.

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [x] If this change affects the UI, I have included before/after
screenshots
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [x] I will address all Greptile and reviewer comments before
requesting merge

---------

Co-authored-by: Paperclip <noreply@paperclip.ing>
2026-05-22 08:12:52 -05:00
DottaandPaperclip 5071c4c776 [codex] Add workspace diff viewer plugin (#6071)
## Thinking Path

> - Paperclip orchestrates AI agents for zero-human companies.
> - Operators need to inspect what agents changed inside execution and
project workspaces.
> - The existing workspace detail views did not provide a first-party
rich diff surface for staged, unstaged, head, renamed, binary,
oversized, and untracked changes.
> - The plugin system is the intended extension point for optional rich
UI surfaces.
> - This pull request adds a workspace diff plugin plus host services
and shared contracts so Changes tabs can render workspace diffs through
plugin slots.
> - The diff-renderer dependency should stay owned by the plugin package
rather than the core UI app.
> - The dependency surface must stay aligned with repository PR policy,
including intentionally omitting `pnpm-lock.yaml` from the PR.
> - The benefit is a more reviewable workspace surface without
hard-coding the renderer into every page.

## What Changed

- Added `@paperclipai/plugin-workspace-diff`, including diff
normalization, plugin manifest/worker/UI entrypoints, and focused plugin
tests.
- Kept `@pierre/diffs` scoped to `@paperclipai/plugin-workspace-diff`;
removed the core UI lab diff-renderer surface and direct UI package
dependency.
- Added shared workspace diff types and validators, plus plugin SDK
surface for workspace diff host services.
- Added server workspace diff service support and route coverage for
execution/project workspace diff flows.
- Wired Execution Workspace and Project Workspace Changes tabs to load
the diff plugin, including loading/error fallback behavior.
- Added UI tests and fixtures for the Changes tabs and plugin bridge
behavior.
- Added the new plugin package manifest to the Docker deps stage so PR
policy can validate dependency coverage.
- Addressed review hardening around empty untracked patches, workspace
path exposure, project workspace read capability checks, and default
base refs.

## Verification

- `pnpm --filter @paperclipai/plugin-workspace-diff test`
- `pnpm exec vitest run
packages/shared/src/validators/workspace-diff.test.ts
server/src/__tests__/workspace-diff-service.test.ts
ui/src/pages/ProjectWorkspaceDetail.test.tsx
ui/src/pages/ExecutionWorkspaceDetail.test.tsx`
- `pnpm exec vitest run ui/src/plugins/bridge.test.ts
server/src/__tests__/workspace-runtime-routes-authz.test.ts`
- `pnpm --filter @paperclipai/shared typecheck`
- `pnpm --filter @paperclipai/plugin-workspace-diff typecheck`
- `pnpm --filter @paperclipai/server typecheck`
- `pnpm --filter @paperclipai/ui typecheck`
- `node ./scripts/check-docker-deps-stage.mjs`
- Browser screenshot captured from the local worktree dev server:
https://files.catbox.moe/ofdpsp.png
- Confirmed branch is rebased onto `public-gh/master`,
`.github/workflows/pr.yml` is not included in the PR diff,
`ui/package.json` is not included in the PR diff, and `pnpm-lock.yaml`
is not included in the PR diff.

## Risks

- Medium UI integration risk: the Changes tab depends on the plugin slot
and host diff service path.
- Medium dependency risk: this adds `@pierre/diffs` in the plugin
package, but `pnpm-lock.yaml` is intentionally omitted per packaging
instructions because repository automation manages lockfile updates.
- Current CI blocker: downstream frozen installs fail until the
repository policy path for new plugin package dependencies is chosen.
- Diff rendering edge cases are covered for common working-tree and head
diff states, but very large repositories may still expose performance
limits.
- No migrations are included.

> For core feature work, check [`ROADMAP.md`](ROADMAP.md) first and
discuss it in `#dev` before opening the PR. Feature PRs that overlap
with planned core work may need to be redirected — check the roadmap
first. See `CONTRIBUTING.md`.

## Model Used

- OpenAI Codex, GPT-5 class coding model, tool-enabled local execution
environment. Exact context window was not exposed by the runtime.

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [x] If this change affects the UI, I have included before/after
screenshots
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [x] I will address all Greptile and reviewer comments before
requesting merge

---------

Co-authored-by: Paperclip <noreply@paperclip.ing>
2026-05-18 08:50:06 -05:00
DottaandPaperclip d734bd43d1 [codex] Roll up May 17 branch changes (#6210)
## Thinking Path

> - Paperclip is the control plane for autonomous AI companies, so agent
work needs visible ownership, recovery, and operator controls.
> - This local branch had accumulated several related control-plane
reliability and operator-experience fixes across recovery actions,
watchdog folding, model-profile defaults, mentions, markdown editing,
plugin launchers, and small UI polish.
> - The branch needed to be converted into a PR against the current
`origin/master` without losing dirty work or including lockfile/workflow
churn.
> - The safest standalone shape is a single rollup PR because the
recovery/server/UI files overlap heavily across the local commits and
splitting would create avoidable conflicts.
> - This pull request replays the local branch onto latest
`origin/master`, preserves the uncommitted work as logical commits, and
adds a Zod 4 validator compatibility fix found during verification.
> - The benefit is that the May 17 local branch can be reviewed and
merged as one coherent, conflict-free branch under the 100-file Greptile
limit.

## What Changed

- Rebased the local May 17 branch work onto current `origin/master` in a
dedicated worktree.
- Preserved and committed previously dirty changes for recovery retry
handling, plugin/sidebar launcher polish, and `.herenow` ignores.
- Added recovery-action behavior for returning source issues to `todo`
when retrying source-scoped recovery.
- Included the existing local recovery/liveness/watchdog fold, Codex
cheap-profile, markdown/mention, duplicate-agent, and UI polish commits
from the branch.
- Normalized shared validator `z.record(...)` schemas to explicit
string-key records for Zod 4 compatibility.
- Confirmed the PR has no `pnpm-lock.yaml` or `.github/workflows/*`
changes and stays below the 100-file Greptile limit.

## Verification

- `pnpm install --frozen-lockfile --ignore-scripts`
- `npm run install` in
`node_modules/.pnpm/sqlite3@5.1.7/node_modules/sqlite3` to build the
local native sqlite3 binding after installing with scripts disabled
- `pnpm exec vitest run packages/shared/src/validators/issue.test.ts
packages/shared/src/project-mentions.test.ts
packages/adapter-utils/src/server-utils.test.ts
server/src/__tests__/heartbeat-model-profile.test.ts
server/src/__tests__/issue-recovery-actions.test.ts
server/src/__tests__/issue-agent-mutation-ownership-routes.test.ts
server/src/__tests__/heartbeat-active-run-output-watchdog.test.ts
server/src/__tests__/plugin-local-folders.test.ts
ui/src/components/IssueRecoveryActionCard.test.tsx
ui/src/components/Sidebar.test.tsx
ui/src/components/SidebarAccountMenu.test.tsx
ui/src/components/IssueProperties.test.tsx
ui/src/components/MarkdownEditor.test.tsx
ui/src/components/MarkdownBody.test.tsx
ui/src/lib/duplicate-agent-payload.test.ts
ui/src/pages/Routines.test.tsx`
- First pass: 13 files passed with 201 passing tests; 3 server files
failed before sqlite3 native binding was built.
- After rebuilding sqlite3:
`server/src/__tests__/heartbeat-model-profile.test.ts`,
`server/src/__tests__/issue-recovery-actions.test.ts`, and
`server/src/__tests__/heartbeat-active-run-output-watchdog.test.ts`
passed/loaded; embedded Postgres tests were skipped by the local host
guard.
- `pnpm --filter @paperclipai/shared typecheck`
- `pnpm --filter @paperclipai/adapter-utils typecheck`
- `pnpm --filter @paperclipai/server typecheck`
- `pnpm --filter @paperclipai/ui typecheck`

## Risks

- Medium risk: this is a broad rollup PR across recovery semantics,
server tests, shared validators, and UI surfaces.
- Some embedded Postgres tests skipped locally due the host guard, so CI
should provide the stronger database-backed signal.
- UI changes were covered by component tests, but no browser screenshot
was captured in this PR creation pass.
- This branch may overlap with existing recovery/liveness PR work; merge
this PR independently or restack/close overlapping branches rather than
merging duplicate implementations together.

> For core feature work, check [`ROADMAP.md`](ROADMAP.md) first and
discuss it in `#dev` before opening the PR. Feature PRs that overlap
with planned core work may need to be redirected — check the roadmap
first. See `CONTRIBUTING.md`.

## Model Used

- OpenAI Codex, GPT-5-based coding agent, tool-enabled local repository
and GitHub workflow, medium reasoning effort.

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [ ] If this change affects the UI, I have included before/after
screenshots
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [x] I will address all Greptile and reviewer comments before
requesting merge

---------

Co-authored-by: Paperclip <noreply@paperclip.ing>
2026-05-17 17:15:06 -05:00
DottaandPaperclip 3c73ed26b5 Expand plugin host surface (#5205)
## Thinking Path

> - Paperclip orchestrates AI agents for zero-human companies
> - The plugin system is the extension boundary for optional product
capabilities
> - Rich plugins need more than a worker entrypoint: they need scoped
database storage, local project folders, managed agents/routines, host
navigation, and reusable UI components
> - The LLM Wiki work exposed those missing host surfaces while keeping
plugin code outside the core control plane
> - This pull request expands the core plugin host, SDK, server APIs,
and UI bridge so plugins can declare and use those surfaces
> - The benefit is that future plugins can integrate with Paperclip
through documented, validated contracts instead of bespoke server or UI
imports

## What Changed

- Added plugin-managed database namespaces and migration tracking,
including Drizzle schema/migration files and SQL validation for
namespace isolation.
- Added server support for plugin local folders, managed agents, managed
routines, scoped plugin APIs, and plugin operation visibility.
- Expanded shared plugin manifest/types/validators and SDK
host/testing/UI exports for richer plugin surfaces.
- Added reusable UI pieces for file trees, managed routines, resizable
sidebars, route sidebars, and plugin bridge initialization.
- Updated plugin docs and example plugins to use the expanded host and
SDK surface.

## Verification

- `pnpm install --frozen-lockfile`
- `pnpm run preflight:workspace-links && pnpm exec vitest run
packages/shared/src/validators/plugin.test.ts
server/src/__tests__/plugin-database.test.ts
server/src/__tests__/plugin-local-folders.test.ts
server/src/__tests__/plugin-managed-agents.test.ts
server/src/__tests__/plugin-managed-routines.test.ts
server/src/__tests__/plugin-orchestration-apis.test.ts
ui/src/api/plugins.test.ts ui/src/components/FileTree.test.tsx
ui/src/components/ResizableSidebarPane.test.tsx
ui/src/pages/PluginPage.test.tsx ui/src/plugins/bridge.test.ts` passed:
11 files, 67 tests.
- Confirmed this PR changes 89 files and does not include
`pnpm-lock.yaml` or `.github/workflows/*`.

## Risks

- Medium: this expands plugin host contracts across db/shared/server/ui
and includes a new core migration (`0076_useful_elektra.sql`).
- The plugin database namespace validator is intentionally restrictive;
plugin authors may need follow-up affordances for SQL patterns that
remain blocked.
- Merge this before the LLM Wiki plugin PR so the plugin can resolve the
new SDK and host APIs.

> For core feature work, check [`ROADMAP.md`](ROADMAP.md) first and
discuss it in `#dev` before opening the PR. Feature PRs that overlap
with planned core work may need to be redirected — check the roadmap
first. See `CONTRIBUTING.md`.

## Model Used

- OpenAI Codex, GPT-5 coding agent, tool-enabled shell/git/GitHub
workflow. Context window size was not exposed by the runtime.

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [x] If this change affects the UI, I have included before/after
screenshots
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [x] I will address all Greptile and reviewer comments before
requesting merge

---------

Co-authored-by: Paperclip <noreply@paperclip.ing>
2026-05-05 07:42:57 -05:00
DottaandPaperclip 7f893ac4ec [codex] Harden execution reliability and heartbeat tooling (#3679)
## Thinking Path

> - Paperclip orchestrates AI agents for zero-human companies
> - Reliable execution depends on heartbeat routing, issue lifecycle
semantics, telemetry, and a fast enough local verification loop to keep
regressions visible
> - The remaining commits on this branch were mostly server/runtime
correctness fixes plus test and documentation follow-ups in that area
> - Those changes are logically separate from the UI-focused
issue-detail and workspace/navigation branches even when they touch
overlapping issue APIs
> - This pull request groups the execution reliability, heartbeat,
telemetry, and tooling changes into one standalone branch
> - The benefit is a focused review of the control-plane correctness
work, including the follow-up fix that restored the implicit
comment-reopen helpers after branch splitting

## What Changed

- Hardened issue/heartbeat execution behavior, including self-review
stage skipping, deferred mention wakes during active execution, stranded
execution recovery, active-run scoping, assignee resolution, and
blocked-to-todo wake resumption
- Reduced noisy polling/logging overhead by trimming issue run payloads,
compacting persisted run logs, silencing high-volume request logs, and
capping heartbeat-run queries in dashboard/inbox surfaces
- Expanded telemetry and status semantics with adapter/model fields on
task completion plus clearer status guidance in docs/onboarding material
- Updated test infrastructure and verification defaults with faster
route-test module isolation, cheaper default `pnpm test`, e2e isolation
from local state, and repo verification follow-ups
- Included docs/release housekeeping from the branch and added a small
follow-up commit restoring the implicit comment-reopen helpers that were
dropped during branch reconstruction

## Verification

- `pnpm vitest run
server/src/__tests__/issue-comment-reopen-routes.test.ts
server/src/__tests__/issue-telemetry-routes.test.ts`
- `pnpm vitest run server/src/__tests__/http-log-policy.test.ts
server/src/__tests__/heartbeat-run-log.test.ts
server/src/__tests__/health.test.ts`
- `server/src/__tests__/activity-service.test.ts`,
`server/src/__tests__/heartbeat-comment-wake-batching.test.ts`, and
`server/src/__tests__/heartbeat-process-recovery.test.ts` were attempted
on this host but the embedded Postgres harness reported
init-script/data-dir problems and skipped or failed to start, so they
are noted as environment-limited

## Risks

- Medium: this branch changes core issue/heartbeat routing and
reopen/wakeup behavior, so regressions would affect agent execution flow
rather than isolated UI polish
- Because it also updates verification infrastructure, reviewers should
pay attention to whether the new tests are asserting the right failure
modes and not just reshaping harness behavior

## Model Used

- OpenAI Codex coding agent (GPT-5-class runtime in Codex CLI; exact
deployed model ID is not exposed in this environment), reasoning
enabled, tool use and local code execution enabled

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [ ] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [ ] If this change affects the UI, I have included before/after
screenshots
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [x] I will address all Greptile and reviewer comments before
requesting merge

---------

Co-authored-by: Paperclip <noreply@paperclip.ing>
2026-04-14 13:34:52 -05:00
gsxdsm ec261e9c7c Enhance plugin loading and toolbar integration
- Added packagePath to plugin loader for improved manifest handling.
- Refactored GlobalToolbarPlugins for better slot and launcher management in BreadcrumbBar.
- Updated launcher trigger styles for globalToolbarButton.
2026-03-14 15:27:45 -07:00
gsxdsm 811e2b9909 Add globalToolbarButton slot type and update related documentation 2026-03-14 15:05:04 -07:00
Dotta 30888759f2 Clarify plugin authoring and external dev workflow 2026-03-14 10:40:21 -05:00
Dotta cb5d7e76fb Expand kitchen sink plugin demos 2026-03-14 09:26:45 -05:00
Dotta 6fa1dd2197 Add kitchen sink plugin example 2026-03-13 23:03:51 -05:00
Dotta 12ccfc2c9a Simplify plugin runtime and cleanup lifecycle 2026-03-13 16:58:29 -05:00
Dotta 80cdbdbd47 Add plugin framework and settings UI 2026-03-13 16:22:34 -05:00