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9db3a5726e70fe00579e7bf7dfdd04ff48cb4b35
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9db3a5726e |
refactor(tools): isolate GitHub access discovery (#17144)
## Thinking Path > - Paperclip manages AI agents and their access to external tools. > - Tool connections discover repositories through GitHub account grants. > - The tool-access service mixes GitHub response parsing with grant authorization and persistence. > - These responsibilities have different inputs and failure rules. > - This PR puts GitHub discovery in one provider module. > - The service keeps current authority checks and stored grant updates. ## Linked Issues or Issue Description **What existing behavior does this improve?** The ownership and review of GitHub access discovery in the tool-access service. **Current behavior** The 21,525-line service contains GitHub pagination, account metadata validation, and grant lifecycle code. **Proposed behavior** A GitHub module returns normalized access metadata. Existing service exports remain compatible. This is the first PR in a three-part refactor stack. No behavior change is intended. A search found no existing tool-access refactor PR or issue. Stack order: this PR, #17146, then #17147. Each PR targets its predecessor. ## What Changed - Move six functions into `tool-access/github-access-discovery.ts`. Their bodies are unchanged. - Keep grant selection, credential resolution, refresh retry, membership locks, revision checks, and webhook updates in the service. - Add public-entry characterization tests for HTTP error classification and invalid pagination. - Record five candidate boundaries and the initial three-PR scope in the dated plan. - Reduce `tool-access.ts` from 21,525 lines / 829,519 bytes to 21,237 lines / 820,116 bytes. The new module is 294 lines / 9,722 bytes. ## Verification - Before and after: `pnpm exec vitest run server/src/__tests__/github-grant-metadata.test.ts server/src/__tests__/project-repositories.test.ts` — 13 tests pass. - Before and after: `pnpm exec vitest run server/src/__tests__/tool-access-service.test.ts -t 'GitHub|github'` — 11 selected tests pass with disposable PostgreSQL; 455 cases are outside this selection. - `pnpm --filter @paperclipai/server typecheck` passes. - Exact text comparison confirms all six moved bodies match the base. `git diff --check` passes. - The initial baseline attempt failed because the plugin SDK had not been built. The normal workspace prerequisite build resolved it before behavioral validation. - Final-stack local verification: `pnpm -r --workspace-concurrency=2 typecheck` and `pnpm build` pass. CI is green at `07e78dd1b1c26e0bd4234006766444c71e234451`. Greptile is 5/5 with no actionable findings. - Full local-suite limitation: `pnpm test:run` was interrupted after 79 minutes during the serial general-server phase, after CI had completed the full test matrix. Before interruption, it flagged the unchanged `company-search-service.test.ts` suite (26 database cases skipped). One isolated rerun passed all 28 cases without code changes. The original log and a pre-interruption copy are preserved. The original failure cause was not reproduced. The full local suite and its later groups are not claimed as passed; the complete CI matrix is green on this stack. ## Risks - Import wiring could break existing consumers. Existing imports remain supported and all four production call sites are unchanged. - Provider requests retain their ordering, timeout, fixed GitHub origin, and response redaction. The new module has no database dependency or shared mutable state. - Tests simulate GitHub responses. They do not qualify live GitHub access. ## Model Used OpenAI Codex, GPT-6 family, with code execution and repository tools. The exact serving model ID and context-window size are not exposed in this session. ## Checklist - [x] I have included a thinking path that traces from project context to this change - [x] I have specified the model used (with version and capability details) - [x] I have checked ROADMAP.md and confirmed this PR does not duplicate planned core work - [x] I have searched GitHub for duplicate or related PRs and linked them above - [x] I have either (a) linked existing issues with `Fixes: #` / `Closes #` / `Refs #` OR (b) described the issue in-PR following the relevant issue template - [x] I have not referenced internal/instance-local Paperclip issues or links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip` URLs) - [x] My branch name describes the change (e.g. `docs/...`, `fix/...`) and contains no internal Paperclip ticket id or instance-derived details - [x] I have run tests locally and they pass - [x] I have added or updated tests where applicable - [x] I have updated relevant documentation to reflect my changes - [x] I have considered and documented any risks above - [x] All Paperclip CI gates are green - [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups - [x] I will address all Greptile and reviewer comments before requesting merge Co-authored-by: Paperclip <noreply@paperclip.ing> |
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734c265339 |
Default new Pi agents to Paperclip Runner (#17142)
## Thinking Path > - Paperclip manages AI agents and their work. > - Users choose a harness during agent setup. > - Claude, Codex, and OpenCode already receive their qualified Runner default. > - Pi has a qualified native integration but new Pi agents still use the direct adapter. > - This change gives new Pi agents the native default on supported targets. > - Saved agents keep their runner and compatible settings. Legacy remains available in Advanced. ## Linked Issues or Issue Description Refs #17120, #14921, #14922, #14923, #14924, and #14956. Related generic default work: #15422. This PR is the separate Pi follow-up to the merged OpenCode change. **Current behavior** Choosing Pi for a new agent saves the direct Pi adapter. The native Pi integration remains behind the generic experimental flag. **Proposed behavior** Default new Pi agents to ACPX Pi on macOS ARM64/x64 and GNU/Linux x64 with supported glibc. Keep unsupported targets and explicit Legacy selections on the direct adapter. Require an explicit provider/model before test or hire. Permit model-free inactive setup drafts. **Reason and benefit** Users choose Pi once and receive its qualified runner. Saved agents retain their identity and settings. Conversions reject unsupported legacy thinking and launch settings instead of dropping them. ## What Changed - Add Pi to the shared platform/default contract and server creation selection. - Admit native Pi without the generic experimental flag. - Preserve provider models, credentials, workspace settings, exact thinking, and saved native policies. - Add Pi runner controls, branding, setup resume, onboarding, built-in configuration, and import handling. - Add managed Pi OpenRouter routing and matching native provider API-key accounts. Keep subscription and custom gateway exclusions. Clear alternate credentials and reject custom Pi provider overrides. - Keep Pi draft models empty instead of applying Claude's default model. - Verify setup against the pinned Pi runtime. For native Pi on the official OpenRouter route, reverify the API key live without requiring a global Legacy Pi CLI. - Match Pi’s bounded controller close window to its native snapshot cleanup and lifetime verification, preserving explicit caller deadlines and the mandatory drain/suspension proof. - Bind Pi sidecars to the package that owns the pinned native assets, including source and vendored server layouts. Other providers retain their existing package authority. - Keep protocol-owned finish/block tools out of the ACPX forwarded catalog. The trusted bridge installs these tools itself; the complete Rust authorization catalog and terminal receipt ledger remain intact. This fixes actual Pi session startup and applies to other ACPX consumers. - Advance Copilot’s shared-source attestation to v58 because it pins the shared files touched by Pi. Preserve immutable v57 bytes and historical decoding; Pi’s own release identity is unchanged. - Add regression coverage and update the paired maps and developer documentation. ## Verification - Passed: full repository typecheck and full production build on final head |
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92cfd701c3 |
feat: add governed Braintrust app connections (#17141)
Add hosted US and EU Braintrust OAuth and API-key connections through the existing governed MCP system. Keep reviewed tool risks and catalog review policy in connector modules and a narrow registry. Preserve credential ownership, operator decisions, regional setup and changed-tool quarantine. Include official artwork, setup guidance, focused regressions and sanitized qualification evidence. US OAuth has bounded live read/write, gateway, reconnect and cleanup proof. Remaining account-method and token-lifecycle qualification gaps are documented. Co-Authored-By: Paperclip <noreply@paperclip.ing> |
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efc2ddc7bf |
fix: stop idle login cleanup polling (#17106)
**Dependency landed:** PR #17129 is merged. This branch is rebased onto master `0f15f82b19` and preserves its provider-owned completion contract. The shared save path calls `notifyLoginSessionChanged(tx)`; the cleanup module invalidates both existing sandbox cleanup workers without selecting a provider. ## Thinking Path > - Paperclip manages work for AI agents. > - Subscription login can allocate a temporary sandbox. > - Existing cleanup workers scan the database every heartbeat tick, even with no login work. > - Empty scans keep idle databases active. > - This PR uses committed session changes and saved expiry times to schedule cleanup. > - Existing rows still drive recovery after failure and restart. ## Linked Issues or Issue Description **What happened?** On master `898144f4b3`, the enabled heartbeat scheduler runs both login reapers every 30 seconds by default. An instance with no pending logins still queries sessions and leases. **What did you expect to happen?** After startup reconciliation, idle login cleanup should make no recurring SQL or provider calls. New sessions, expiry, failed cleanup and restart must still recover. **Steps to reproduce** Start a claimed instance with heartbeat scheduling enabled and no pending login sessions. Observe repeated adapter-login and setup-token cleanup queries at the heartbeat interval. Related sleep migration: #17094. Searched open issues and PRs. Related setup-token cleanup work: #15774, #14236 and #16648. This PR does not change their release-result or null-lease behavior. ## What Changed - Register separate adapter-login and setup-token workers with the existing delivery coordinator and scheduler. - Notify before writes in the owning stores, the lease-tag write, and AI connection save. Shared save uses a provider-neutral notification; each cleanup worker checks its own durable predicates. The shared transaction protocol retains intent until the outer transaction settles. - Reconstruct session expiry, promotion expiry and concrete cleanup retries from existing rows. Preserve configured heartbeat spacing to bound scan bursts. - Recover tagged orphan leases even with terminal or missing sessions. Protect live acquisitions that have not attached their lease yet. - Exclude local-subscription rows from sandbox reapers. Their existing local-login worker owns cleanup. - Preserve deferred work across drain and shutdown. Add no tables, Cloud alarms or host-sleep exemptions. - Update the inventory and document producer coverage, writer scope and recovery boundaries. ## Verification - Updated head: `1d57e13606`. Seven focused suites passed (282 tests): AI connections, login cleanup, device-login service/reaper, login-session runtime, and setup-token session/reaper. `pnpm -r typecheck` and `pnpm build` passed. The duplicate local `pnpm test:run` was interrupted after CI passed all server shards; it is not counted as a complete local pass. Full-suite evidence comes from the exact-head CI run. Greptile reviewed this exact head at 5/5 with no findings or unresolved threads. [Full CI run 39669285577](https://github.com/paperclipai/paperclip/actions/runs/39669285577) passed on attempt 2. Both aggregate gates passed; no checks remain failed or pending. - Extended the real PostgreSQL AI connection tests for both Anthropic and OpenAI. The tests check that neither cleanup observer wakes inside the completion callback, both wake after commit, and an idempotent save does not emit another wake. - Existing cleanup tests cover idle/history states, producer wake, expiry, promotion, cancellation, retry/restart, orphan recovery, nested commit/rollback, drain, concurrency, and shutdown. - Current-head CI attempt 1: the unchanged `sandbox-callback-bridge.test.ts` HTTP/2 preface test failed because its child process could not bind `127.0.0.1:34033` (`EADDRINUSE`). Its single unchanged rerun passed. The exact test also passed locally without changing code or timeouts. This establishes recovery from the bind collision; it does not establish which process owned the port. No login code ran in that package test. - Previous-head failures remain recorded: the login-runtime transaction fixture was corrected; a workspace-runtime readiness port-bind failure passed in isolation and fresh CI, but its first failure cause remains unconfirmed. An earlier combined AI suite timed out in local-login isolation and passed alone; its timing cause remains unconfirmed. An earlier local full suite was interrupted and was not counted as passing. ## Risks - Process-local signals cover one active server with the instrumented shared database handle. Independent SQL writers or replicas need their own signal integration. - Provider resources that never became persisted tagged leases remain the responsibility of the unchanged general lease/spool recovery. Setup-token acquisition retains its required provider expiry. - Cleanup starts are bounded by the configured heartbeat interval. Writes during a sweep can cause a final follow-up scan before quiet. - Existing login and resource blockers still prevent unsafe host sleep. This is worker polling removal, not provider sleep qualification. ## Model Used OpenAI GPT-6 through Codex, with reasoning, repository tools and test execution. The exact serving model ID and context-window size are not exposed in this session. ## Checklist - [x] I have included a thinking path that traces from project context to this change - [x] I have specified the model used (with version and capability details) - [x] I have checked ROADMAP.md and confirmed this PR does not duplicate planned core work - [x] I have searched GitHub for duplicate or related PRs and linked them above - [x] I have either (a) linked existing issues with `Fixes:` / `Closes` / `Refs` OR (b) described the issue in-PR following the relevant issue template - [x] I have not referenced internal/instance-local Paperclip issues or links (only public GitHub references) - [x] My branch name describes the change and contains no internal/instance-derived details - [x] I have run tests locally and they pass - [x] I have added or updated tests where applicable - [x] I have updated relevant documentation to reflect my changes - [x] I have considered and documented any risks above - [x] All Paperclip CI gates are green - [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups - [x] I will address all Greptile and reviewer comments before requesting merge --------- Co-authored-by: Paperclip <noreply@paperclip.ing> |
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0f15f82b19 |
feat: offer existing Claude and Codex agents a runner upgrade (#17122)
## Thinking Path > - Paperclip is the open source app people use to manage AI agents for work. > - Each agent stores its harness, model, account and runtime configuration. > - New Claude and Codex agents now use Paperclip Runner on qualified targets. > - Existing agents keep their legacy runner and need a clear upgrade action. > - The existing configuration API already translates settings and records revisions. > - This pull request adds an explicit upgrade action that uses that API. > - Operators can retain supported settings and correct rejected settings in place. ## Linked Issues or Issue Description **What existing behavior does this improve?** Existing Claude and Codex agent configuration. Related defaults: #15683 and #15993. **Current behavior** Existing agents retain their legacy runner. The operator must find the runner selector in Advanced to change it. **Proposed behavior** Show Upgrade runner when Paperclip Runner is the qualified default for the saved environment. One click saves pending edits and requests the existing server conversion. Show any rejected settings without changing saved configuration. **Reason and benefit** Operators can adopt the current runner while retaining their harness, model, account bindings, instructions and history. Unsupported settings remain visible and editable. **Breaking changes** None. Visiting configuration and saving unrelated changes do not upgrade an agent. The server API, authorization and conversion rules are unchanged. ## What Changed - Add an upgrade notice, pending state, saved result and retry feedback to the production configuration form. - Include pending profile, runtime and environment-variable edits in the upgrade request. - Bind asynchronous upgrade feedback and save receipts to their original agent. Navigating away cannot show success on another agent or redirect back. - Keep the notice absent for native agents, other harnesses, unavailable targets and failed discovery. - Add configuration/API regressions and database session-reset checks for Claude and Codex. - Add 13 production-page Storybook states with browser checks in both themes and on mobile. - Update the product contract and feature/access maps. ## Verification - Configuration form and original-agent save receipts: 135 tests passed. Existing agent route/rename helpers also pass. - Runner selection, configuration API and database migration regressions: 220 tests passed. - Storybook browser checks: 26 passed. Interactive cases wait for Storybook's visible Pass report. Static cases check the rendered production form. These use simulated HTTP boundaries. - Full typecheck, build, map checks and token gates passed on the current head. Storybook build and public preview verification passed. - Published fixture preview: https://storybook.paperclip.page/storybook/branches/codex~2Fagent-runner-upgrade/?path=/story/agents-runner-upgrade--legacy-codex - All 58 current-head PR checks passed, including the full test shards, browser suites, build and aggregate gates. The duplicate local pnpm test:run was stopped after 34 minutes once the same-head full CI suite passed; it had not finished its general-server phase. No local full-suite pass is claimed. - Real disposable local test drive: Codex used gpt-5.4 and Claude used claude-sonnet-4-6. Both completed one task on Legacy, upgraded through the browser button, and completed another task on Paperclip Runner with the same model and API credentials. Independent file checks confirmed saved instructions and environment bindings before and after conversion. - Reopened both configurations and compared identity, model, credential references, instruction hashes, working directories, run policies and configuration revisions. - A Claude Chrome setting produced a field-specific rejection. The saved agent stayed Legacy. Clearing Chrome in the form and clicking Upgrade runner saved the pending correction and completed conversion. ## Risks - The existing translator rejects settings that the new runner cannot honor. The notice shows that error and leaves the form available for correction. - Converted agents start fresh sessions. Prior runs remain available. - Real task execution was checked on local macOS with API credentials. SSH, sandbox targets and subscription credentials were not exercised in this change. - Storybook responses simulate persistence. The real test drive and database tests provide separate persistence evidence. ## Model Used - OpenAI GPT-6 through Codex. The exact serving variant and context-window size were not exposed in this session. Used reasoning, code editing, shell tools and browser interaction. No subagents. ## Checklist - [x] I have included a thinking path that traces from project context to this change - [x] I have specified the model used (with version and capability details) - [x] I have checked ROADMAP.md and confirmed this PR does not duplicate planned core work - [x] I have searched GitHub for duplicate or related PRs and linked them above - [x] I have either (a) linked existing issues with `Fixes: #` / `Closes #` / `Refs #` OR (b) described the issue in-PR following the relevant issue template - [x] I have not referenced internal/instance-local Paperclip issues or links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip` URLs) - [x] My branch name describes the change (e.g. `docs/...`, `fix/...`) and contains no internal Paperclip ticket id or instance-derived details - [x] I have run tests locally and they pass - [x] I have added or updated tests where applicable - [x] I have updated relevant documentation to reflect my changes - [x] I have considered and documented any risks above - [x] All Paperclip CI gates are green - [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups - [x] I will address all Greptile and reviewer comments before requesting merge --------- Co-authored-by: Paperclip <noreply@paperclip.ing> |
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39e44a9d9b |
Default new OpenCode agents to Paperclip Runner (#17120)
Default new OpenCode agents to Paperclip Runner on qualified macOS and Linux x64 targets. Preserve saved runner choices, explicit Legacy selection, and unsupported-target fallback. Pi remains a separate change. Verified the complete browser path with a real OpenRouter connection: create the new agent, assign a task, observe its response and Done status, and reload to confirm persistence. CI passes and Greptile is 5/5 with no unresolved findings. Co-Authored-By: Paperclip <noreply@paperclip.ing> |
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0a5f1546ee |
feat(cases): add reusable prompt workflows (#17114)
## Thinking Path > - Paperclip manages AI agents and their work. > - Cases keep facts, documents, and one primary task across agent handoffs. > - Each case currently needs its own procedure text. > - Agents need to reuse procedures and move cases between them without replacing the task. > - This change adds company workflow definitions with a name and Markdown prompt. > - Existing handoff and document transactions preserve authority, revisions, and recovery. > - Cases remain behind `experimental.enableCases`. ## Linked Issues or Issue Description Refs #16959. Related proposal: #3951 uses task graphs and a visual editor. This change extends existing Cases with prompt definitions and keeps its current handoff model. **Problem or motivation** Agents cannot share a reusable procedure across cases or inspect a case's movement between procedures. **Proposed solution** Add name-and-prompt workflow definitions. Adopt a prompt into the primary task's revisioned workflow document through a handoff. Keep phases as free text. **Alternatives considered** Defer graphs, workflow versions, run entities, role schemas, authoring screens, and Spec Kit integration. **Roadmap alignment** This extends the existing Cases experiment and same-task review flow. It adds no work queue or new execution engine. The maintainer approved this scope in the implementation plan. ## What Changed - Add company-scoped definition storage, shared request schemas, REST routes, and four optional Cases tools. - Accept a workflow ID at kickoff. Agent handoffs can adopt, refresh, preserve, or detach a workflow. - Capture prompt text and the document base revision at acceptance. Apply workflow, phase, and document revision together after outgoing execution settles. - Hold conflicting document edits for recovery. Preserve cancellation, replay, and restart behavior. - Show current workflow names and captured transition names/phases in Work, history, and Audit. - Update instructions, API/tool contracts, capability maps, and the isolated workflow journey. - Pin bounded workflow prompt reads to a content fingerprint; continuation conflicts on edits and can restart safely. - Remove experimental Cases/workflow/Mermaid guidance from the always-on native prompt. Extract runtime-context prompt strings into a CODEOWNERS-protected constants file while preserving the public imports. - Refresh Copilot’s pinned source identity to v57, including the extracted prompt file and retaining historical identities. ## Verification Local checks: repository `pnpm -r typecheck` and `pnpm build` pass on the prompt-extraction tree (`88222d45d8`). Full repository coverage previously completed through the supported isolated shard groups (1,082 general server suites, 161 serialized suites, and all three workspace groups). The earlier default serial run was interrupted and remains incomplete. The first sharded run retained the failures described below; targeted corrections and separate limited-concurrency reruns pass. All CI jobs, security checks, and the 5/5 Greptile review passed on `fc1bd79c28`. Fresh CI and review are pending for the prompt extraction in `88222d45d8`. Focused verification passes: real-database handoff recovery and reuse; 2,002 native-tool/API contract checks; 144 Runner catalog/discovery checks; 27 Runner context/coverage checks; 37 case/Audit UI checks; and Product E2E oracle calibration. Token gates, migration safety/numbering, module boundaries, capability maps, and generated tool/Storybook catalogs pass. The final route/context corrections pass 49 API/native-tool tests, 90 real-database handoff tests, and server typecheck; 142 Copilot installation/sidecar tests pass with the refreshed identity. Greptile’s first review found that successive prompt pages could mix definitions after an edit. The fix returns a content fingerprint, requires it for continuation, and rejects edits with 409. Strict live/catalog schemas pass (171 Runner checks). The 2,005 API/OpenAPI tests pass; the initial native regression caught compression’s weak ETag prefix, and all 23 native integration tests pass after handling it. The regression covers same-length edits and a four-byte restart window. No stored version fields or entities were added. The prompt extraction passes all 462 checks across six focused suites, including persisted-context recovery and provider transport. The first local transport attempt lacked the required debug Runner binaries (102 failures, retained); after building the normal prerequisites, all 283 tests in that suite pass without source or assertion changes. Existing saved snapshots retain their recorded prompt text, and new executions use core-only prompt v7. The extracted prompt source is now covered by both CODEOWNERS and Copilot’s source fingerprint. Live-provider evidence is separate from those simulated checks: the isolated API-key campaign `reusable-workflows-api-final-2026-10-21` passed with local code matching `a1d73b4652`. Four actual Codex API runs read the adopted task documents, moved one case A → B → A on the same task, completed normally, and passed all nine durable checks. Browser assertions verified the current workflow/phase, historical names/phases, five handoff records including terminal completion, and the completed original task. Cleanup passed. The local report remains under `tests/runner-e2e/results/reusable-workflows-api-final-2026-10-21/`; no credentials or screenshots are committed. CI initially caught an omitted route-inventory entry and a stale pinned instruction-source hash; both are corrected and separately verified. Local serialized coverage also recorded an unrelated environment-route socket disconnect and activity-route timeout; their separate 11-test and 17-test suites passed without code or timeout changes. An unchanged chunked-webhook check also passed its separate four-test rerun. The initial adapter/database workspace groups hit time and resource limits under default worker counts; complete reruns with `VITEST_MAX_WORKERS=2` pass, including all 55 database files and 211 tests. The UI/CLI groups passed 837 files and 9,442 tests in the original run. Original failures remain retained and are not regraded. Earlier failed live campaigns remain unchanged: subscription HTTP 429 before agent execution; an obsolete exact-four-row oracle that rejected the valid terminal fifth row; and a chat-marker expectation that did not account for the existing explicit-comment presentation policy. The final fixture requires terminal completion and places the marker in its authoritative comment. Positive/negative oracle tests and the fresh live campaign pass. ## Risks - The additive migration adds a table and nullable case/handoff fields. Existing rows keep null workflow metadata; no assignments are inferred. - Adoption can wait on an intervening task-document edit. Recovery must cancel the old intent and accept a new one after readback. - Shared definition edits affect future adoptions. Existing case copies keep their revisions. - The feature remains experimental. This PR does not merge or deploy the change. - Live acceptance covers native Codex before the prompt extraction; this cleanup has contract/transport verification rather than a new live-provider campaign. The refreshed Copilot identity has static compatibility evidence, not new live-provider qualification. ## Model Used OpenAI Codex, configured model ID `gpt-6-astra`, xhigh reasoning. Used terminal execution, file editing, and tool calls. The active context-window size is not exposed. ## Checklist - [x] I have included a thinking path that traces from project context to this change - [x] I have specified the model used (with version and capability details) - [x] I have checked ROADMAP.md and confirmed this PR does not duplicate planned core work - [x] I have searched GitHub for duplicate or related PRs and linked them above - [x] I have either (a) linked existing issues with `Fixes: #` / `Closes #` / `Refs #` OR (b) described the issue in-PR following the relevant issue template - [x] I have not referenced internal/instance-local Paperclip issues or links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip` URLs) - [x] My branch name describes the change (e.g. `docs/...`, `fix/...`) and contains no internal Paperclip ticket id or instance-derived details - [x] I have run tests locally and they pass - [x] I have added or updated tests where applicable - [x] I have updated relevant documentation to reflect my changes - [x] I have considered and documented any risks above - [ ] All Paperclip CI gates are green - [ ] Greptile is 5/5 with no open P2s, recommendations, or follow-ups - [x] I will address all Greptile and reviewer comments before requesting merge --------- Co-authored-by: Paperclip <noreply@paperclip.ing> |
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159d006bb4 |
refactor: let login flows own session completion (#17129)
## Thinking Path > - Paperclip manages AI agents and their connected accounts. > - Login flows bind verified credentials to an owned connection. > - The shared save service currently uses the provider name to choose a session ID column and completion state. > - A provider can support more than one login flow. Provider identity does not define session identity or state. > - This PR gives every flow the same internal session ID contract and lets the setup-token owner complete its own claim. > - Credential writes, session binding, and completion remain in one transaction. ## Linked Issues or Issue Description Refs #17106. This is an independent prerequisite for that sleep cleanup PR. It contains no scheduler or cleanup-worker changes. **Current behavior** The connection save service looks up Anthropic sessions by public ID and all other sessions by internal ID. It also marks every Anthropic session as stored. Local Anthropic login works because its public and internal IDs happen to match, and its caller overwrites that intermediate state. **Proposed behavior** Every caller passes an internal session ID. A small setup-token completion service resolves the public ID within its owner scope and supplies a transaction callback. That callback uses the existing conditional stored transition. Device and local login flows keep their own final states. **Reason and benefit** Adding or changing a login flow no longer requires provider branches in the shared session binding path. The service still owns membership checks, row locking, target validation, credential writes, and idempotent binding. The flow owns only public-ID resolution and its completion transition. **Breaking changes** The internal TypeScript save signature changes. All production callers are updated. Public HTTP payloads, database schema, and local session URLs stay unchanged. ## What Changed - Replace the ambiguous session ID argument with an internal session reference and an optional completion callback. - Run the callback inside the existing save transaction, only for the first successful binding. - Move public-ID resolution and the stored transition to setup-token-ai-connection.ts. - Update setup-token, device, and local callers. - Add real PostgreSQL tests for ID selection, owner and target checks, one-time completion, and rollback after a rejected completion. - Exercise local Anthropic and OpenAI HTTP completion with distinct public and internal IDs. - Document the ownership contract in AI-CONNECTIONS.md. ## Verification - Passed: pnpm -r typecheck. - Passed: pnpm exec vitest run server/src/__tests__/ai-connections.test.ts server/src/__tests__/agent-device-login-routes.test.ts server/src/__tests__/agents-claude-oauth-binding.test.ts — 233 tests. - Passed: pnpm build. - Passed: full CI, including test shards, typecheck, build, and E2E, on |
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a1e2173ceb |
feat(apps): add Ditto connection (#16472)
## Thinking Path > - Paperclip is the open source app people use to manage AI agents for work. > - Agents reach external services through the Apps catalog. Each catalog entry is a reviewed `AppDefinition` that connects a provider's hosted MCP server to Paperclip's shared vault, grants, policies, gateway, and audit trail. > - Ditto (`dittowords.com`) is a single source of truth for product copy. Its hosted MCP server lets agents read style guide rules, search and reuse approved text, and create, edit, translate and delete text, components, variants and style guides. > - Ditto is not in the catalog. Operators must use the generic "Connect your own MCP server" flow. That flow has no branding, no guidance about Ditto's `token` API-key scheme, and no warning about permanent deletes. > - The generic risk classifier also reads several Ditto mutations as reads: `translate_*` replaces variant text, and `link_*` and `unlink_*` replace developer IDs. > - This pull request adds the Ditto definition, its artwork, the research and permission-review ledger rows, documentation, deterministic tests, and one reviewed risk-classification rule. > - The benefit is a branded, governed Ditto connection with browser sign-in, an API-key option that uses the correct header, and correct risk levels for every documented tool. ## Linked Issues or Issue Description **Problem or motivation** Product and engineering teams use Ditto to keep UI copy consistent. They want their Paperclip agents to follow the Ditto style guide and reuse approved strings when they write code. Ditto is not in the Apps catalog. Operators must paste the MCP URL into the generic remote-MCP flow. That flow gives no branding and no method guidance. It also does not tell the operator that Ditto API keys use `Authorization: token <key>`, not `Bearer`, and it does not warn that delete tools are permanent. The generic classifier also marks five Ditto mutations as reads, so the Permissions screen shows them with the wrong risk level. **Proposed solution** Add a catalog-only Ditto connection built from the connector playbook. Browser sign-in uses dynamic client registration on Ditto's Auth0 authorization server and requests the reviewed scopes `openid`, `profile`, `email` and `offline_access`. An optional method sends a customer-created workspace API key with the `token` scheme. Both methods share one `write` capability profile, so the delete and link warning shows before sign-in. Add a reviewed `ditto` rule to `classifyRisk`: `list_*`, `get_*` and `search_*` tools, `suggest_edit`, and tools that Ditto marks read-only are reads; `delete_*` tools are destructive; all other tools are writes. **Alternatives considered** A plugin was not needed because no custom UI, tables, workers, or webhooks are involved. Requesting no scopes was not chosen, because Auth0 issues a refresh token only for `offline_access`, so the connection would expire with its first access token. Ditto's separate documentation MCP server (`developer.dittowords.com/mcp`) was not added, because it only searches Ditto's public docs. **Roadmap alignment** This extends the existing self-serve remote-MCP connection catalog and does not overlap planned core work. ## What Changed - Added the `ditto` provider to `scripts/ingest-app-definitions.mjs` (category `content`, `token` API-key placement, guidance, warnings, shared capability profile, description) and regenerated `packages/shared/src/app-definitions/ditto.json` and the generated registry. - Added the Ditto row to the self-serve MCP research ledger with `dcr_or_api_key` auth and risk tier S4, because the normal tool catalog includes permanent deletes. Widened `SelfServeMcpResearchEntry.wave` to include `4`, which existing entries already use. - Added permission reviews for `ditto/mcp-oauth` (explicit scopes `openid`, `profile`, `email`, `offline_access`) and `ditto/mcp-api-key` (provider key), with evidence links. - Added a reviewed `ditto` rule to `classifyRisk` in `server/src/services/tool-access.ts`. - Added Ditto's mark (`ui/public/brands/apps/ditto.png`, the avatar of Ditto's official GitHub organization) and the brand manifest entry. - Added gallery copy for the Ditto card. - Added `doc/connections/DITTO.md` (sign-in sequence diagram, provider and Paperclip endpoints including `/api/tools/oauth/callback`, scopes, administrator setup, capabilities and policy, manifest, brand provenance, validation hook) and linked it from the connections README and the permission audit. - Tests: Ditto definition shape, store visibility and artwork, URL recognition, reviewed scopes, `token` header projection with the key kept out of connection config, risk classification of every read-looking Ditto mutation, the connect form's sign-in default, the warning before sign-in, API-key gating, and the pinned catalog counts. ## Verification - `pnpm exec vitest run packages/shared/src/app-definitions.test.ts packages/shared/src/app-definitions-url.test.ts ui/src/pages/apps/AppsConnect.test.tsx ui/src/pages/apps/Browse.test.tsx ui/src/lib/app-brand-assets.test.ts ui/src/pages/apps/AppLogo.brand-assets.test.tsx server/src/__tests__/tool-access-service.test.ts` — 765 passed. - `node scripts/check-app-brand-assets.mjs` and `node --test scripts/app-brand-validation.test.mjs` — passed. - `pnpm --filter @paperclipai/shared typecheck`, `pnpm --filter @paperclipai/server typecheck`, `pnpm --filter @paperclipai/ui typecheck` — clean. - Manual: on a local instance, open Apps → Browse and confirm the Ditto card and icon. Open `/apps/connect?source=ditto` and confirm that sign-in is the default, that the warning shows before sign-in, and that the API-key method is under Advanced. - Live metadata probe: an unauthenticated `initialize` on `https://api.dittowords.com/v2/mcp` returns 401 with `resource_metadata`. The protected-resource and authorization-server documents return the recorded endpoints. Dynamic client registration succeeds, and the authorize endpoint redirects to Ditto's sign-in page with the reviewed scopes and the `resource` parameter. - Each of the 41 documented tool names was run through `classifyRisk` with and without the new rule. Without the rule, `translate_text_items`, `translate_library_components`, `link_figma_nodes_to_text_item`, `link_text_items_to_component` and `unlink_text_items_from_component` were reads. ## Risks - Low risk to existing providers: the catalog change is additive, and the new `classifyRisk` branch runs only for the `ditto` source template. - Ditto delete tools are permanent, and linking a text item to a component replaces its developer ID. Both methods warn the operator before connecting, and the API-key helper text tells operators to set delete and link actions to Ask first. - Ditto API keys are not scoped, reach the whole workspace, and act as the user who created them. Paperclip cannot narrow an issued key. - The permission-review ledger records live proof for both methods as not run. The lifecycle checklist in `doc/connections/DITTO.md` still needs a documented pass with a Ditto workspace, including confirmation that Auth0 issues a refresh token that `/v2/mcp` accepts. > For core feature work, check [`ROADMAP.md`](ROADMAP.md) first and discuss it in `#dev` before opening the PR. Feature PRs that overlap with planned core work may need to be redirected — check the roadmap first. See `CONTRIBUTING.md`. ## Model Used - Claude Opus 5.5 (`claude-opus-5-5`, 1M context) in Claude Code, with tool use (shell, file editing, web research). ## Checklist - [x] I have included a thinking path that traces from project context to this change - [x] I have specified the model used (with version and capability details) - [x] I have checked ROADMAP.md and confirmed this PR does not duplicate planned core work - [x] I have searched GitHub for duplicate or related PRs and linked them above - [x] I have either (a) linked existing issues with `Fixes: #` / `Closes #` / `Refs #` OR (b) described the issue in-PR following the relevant issue template - [x] I have not referenced internal/instance-local Paperclip issues or links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip` URLs) - [x] My branch name describes the change (e.g. `docs/...`, `fix/...`) and contains no internal Paperclip ticket id or instance-derived details - [x] I have run tests locally and they pass - [x] I have added or updated tests where applicable - [x] I have updated relevant documentation to reflect my changes - [x] I have considered and documented any risks above - [ ] All Paperclip CI gates are green - [ ] Greptile is 5/5 with no open P2s, recommendations, or follow-ups - [x] I will address all Greptile and reviewer comments before requesting merge |
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6dda8cc2b7 |
fix: preserve Stop authority and qualify complete recovery journeys (#17105)
## Thinking Path > - Paperclip lets people manage agents that do useful work. > - Users need complete tasks, clear questions, retained context, and dependable recovery. > - Separate run tests do not prove that the complete user experience works. > - Successful retries can hide earlier failures and missing evidence. > - This PR extends the existing Product E2E harness with three explicit journeys. > - It adds a qualification checkpoint over the full retained result pool. > - Independent artifacts, state, rendered conversations, and delivery receipts establish each outcome. ## Linked Issues or Issue Description Refs #17088, #17089, and #17046. This PR repairs two Stop lifecycle defects and combines the qualification changes previously reviewed in #17095, #17090, and #17099. Daily operations remain with #17051. It adds no second scheduler or recovery engine. **What happened?** A completed run can still leave a user without useful output, an understandable question, or a working continuation. Existing isolated tests and best-attempt reports do not establish the combined behavior. **Expected behavior** A necessary question includes its explanation and resumes once after an answer. Stop prevents automatic continuation until the user resumes. Restart during finalization preserves the accepted provider result and delivers it once. Qualification requires independent evidence for six journeys on both agents through Slack and Paperclip. **Steps to reproduce** List the necessary-question, followup-stop-resume, and finalization-recovery suites using the documented selectors. Run one exact cell with the configured model and target. Supply a private qualification manifest to the existing report command to grade all retained attempts. Missing proof and incomplete coverage must fail. ## What Changed - Wake existing accounting in the same committed native Stop closure. A receipt that arrives before closure must still settle once; incomplete receipts remain held. - Require a later user message before native Stop can promote earlier saved input. Preserve those earlier messages for the authorized resumption. - Add explicit necessary-question cells. Verify the actual prompt and context, answer, one bound continuation, and the delivered document link and revision. - Add explicit follow-up, Stop, and later resumption cells. Verify a live owned provider turn, cancellation acknowledgement, at least five seconds without an automatic path, retained direction and workspace context, and an actual browser download. - Add explicit Daytona finalization-recovery cells. Stop the owned controller after public result acceptance and during workspace finalization. Require the original result, restored file hash, resumed operation, one provider turn, and one receipt-bound delivery. - Share the receipt-based delivery observer across both recovery journeys. Keep model prose separate from the authoritative delivered comment identity. - Add a 24-cell qualification checkpoint over every retained attempt. Require three fresh candidate passes per cell and later staging proof with exact source, runtime, model, settings, instructions, and independent evidence. - Reject absent or unsafe manifest evidence. Preserve failed attempts and incomplete observations in the normal reports. - Provide four explicit rotating daily selections. Refuse daily selection until all required live drivers exist. Keep scheduling and spending with the existing operations owner. - Document the exact selectors, evidence contract, limitations, and remaining staging work. ## Verification - Local Product E2E support: 3,554 passed with two existing skips; source prerequisites: 128 passed. E2E typecheck passes. The actual file-chip and Download-control browser regression passes. - Two real-database regressions fail before the production repair. The stopped coordinator leaves accounting asleep after a complete receipt; the saved queue can restart from pre-Stop input. The repaired settlement and cancellation cohort passes 66 checks. The complete 256-case continuation suite passes with stronger two-phase Stop expectations, and 66 native executor accounting/Stop safety cases pass. Server typecheck passes. - All required CI, repository build/typecheck/tests, and fresh Greptile 5/5 pass at the final head |
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42715d459f |
Support authenticated WebSocket routes and agent views in plugins (#17111)
## Thinking Path > - Paperclip manages agents and their work. > - Plugins provide optional views and connect to external runtimes. > - A live runtime view needs a binary browser connection. > - The current plugin API supports JSON routes but cannot proxy that connection. > - Agent detail tabs are declared in the plugin contract but are not mounted on agent pages. > - This PR completes those two host capabilities and keeps upstream credentials on the server. ## Linked Issues or Issue Description **Subsystem affected** Plugin scoped API routes and agent detail views. **Problem or motivation** Plugins cannot expose a binary or text stream through a browser session without exposing an upstream credential or adding a separate browser gateway. Agent-scoped detail contributions also have no mount on the agent page. **Proposed solution** Allow declared board GET routes to select a server-only WSS upstream. Run upgrades through the existing HTTP authentication pipeline and trusted Origin check. Add agent company resolution with the existing `agent:read` decision. Mount contributed detail views in agent navigation. **Alternatives considered** A separately hosted viewer needs its own browser credentials and cross-origin policy. JSON or SSE transport adds encoding and buffering to a binary protocol. **Roadmap alignment** This extends the existing plugin API and detail-tab contract. It adds no desktop provider to Core. I checked ROADMAP.md and searched related open PRs; I found no equivalent transport and agent view change. ## What Changed - Add declared WebSocket routes requiring board authentication, GET, and `http.outbound`. Reject body-based company resolution because browser upgrades cannot send a body. - Keep worker-selected upstream URLs and headers out of browser JSON responses. Strip browser cookies and Origin. Preserve binary frames and socket backpressure. - Close both sockets on disconnect or worker shutdown. Reauthorize on reconnect after a five-minute connection lifetime. Preserve HTTP idle-work accounting for the stream lifetime. - Resolve agent scope through `agent:read` and mount generic agent plugin detail views, with current agent/view breadcrumbs and browser titles. ## Verification - Final head `9d8d269040acf9dc7bb65524876406af522dacb5`: CI passes (including Runner Rust, build, and browser E2E); Greptile 5/5; no unresolved review threads; no merge conflicts. Verified 2026-10-21. - Core server TypeScript check: `node node_modules/typescript/bin/tsc -p server/tsconfig.json --noEmit`. - Focused server suites: 17 passing tests (`server/src/__tests__/plugin-scoped-api-routes.test.ts` and `server/src/http/server.test.ts`), including arbitrary build-output and metrics channels with real local text and binary WebSocket round trips, disconnect cleanup, denied actors and origins, credential exclusion, agent-read denial, and cross-company 404 equivalence. The test replaces TLS with local HTTP while retaining the real upgrade and binary stream. - UI suites: 9 passing tests for independent Insights and Notes contributions, removed contributions, built-in route preservation, sidebar links, direct plugin entry and heading updates after tab navigation. These contributions do not require the WebSocket transport. - Shared validator suite: 42 passing tests, including rejecting body-based WebSocket resolution while retaining ordinary HTTP body resolution and accepting query/entity scopes. - UI token gates pass. - UI TypeScript check: `node ../scripts/storybook-catalog.mjs` then `tsc -b`. - Shared and plugin SDK builds pass. - Full Runner build reached its unrelated Rust step and stopped because cargo is unavailable. Runner TypeScript build was run separately. No live remote VM was used. ## Risks - This adds a browser ingress path for trusted installed plugins. The plugin must select its upstream from a trusted binding. HTTP requests cannot retrieve the upstream descriptor. - Membership or binding changes are rechecked on reconnect. Connections last at most five minutes, and worker shutdown is checked every five seconds. - Initial CI caught a missing cross-company 404 guard and an old test that assumed exactly one upgrade listener. Both were corrected. Greptile's body-resolution and stale-heading findings are fixed with regression coverage; latest-head CI passes and Greptile scored 5/5 with no unresolved findings. - No schema migration. Rollback restores the previous Core image; plugins using this transport must be disabled or rolled back first. ## Model Used OpenAI Codex, based on GPT-6, with reasoning and code/tool execution. The exact runtime model ID and context-window size are not exposed in this session. ## Checklist - [x] Thinking path and issue description included - [x] Model described - [x] I have checked ROADMAP.md and confirmed this PR does not duplicate planned core work - [x] I have searched GitHub for duplicate or related PRs and linked them above - [x] No internal issues, private links, or runtime credentials included - [x] Descriptive branch name - [x] Focused tests and relevant typechecks run - [x] Tests and documentation updated - [x] Risks documented - [x] All CI gates green - [x] Greptile 5/5 with no unresolved findings - [x] I will address review findings before requesting merge --------- Co-authored-by: Paperclip <noreply@paperclip.ing> |
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eece07a747 |
fix: repair the complete projectless repository setup chain (#17088)
## Thinking Path > - Paperclip lets people manage agents that do useful work. > - A projectless task can prepare an authorized repository in its retained workspace. > - Setup must hand work to a later run without user supervision. > - Real task attempts exposed gaps across admission, completion, and queue dispatch. > - A successful provider exit did not prove that the requested result was delivered. > - This PR repairs the existing lifecycle and checks the complete repository journey. ## Linked Issues or Issue Description Refs #17047. This PR includes the preserved repairs from #17049, #17052, and #17082. **What happened?** A projectless native task could stop after requesting a repository. It could also continue through a timer or generic recovery path and lose its saved conversation lineage. The latest real Codex and Claude attempts delivered correct files, but the native continuation had been folded into the finishing predecessor. Both attempts remain failed measurements. **Expected behavior** Prepare the authorized repository, retain the original context, and dispatch one saved continuation after its predecessor finishes. Deliver the verified result in the originating conversation. Stop, current access, approval, and real blocker rules remain authoritative. **Steps to reproduce** Run the explicit automatic-repository suite for native Codex or Claude. Inspect the downloaded result, original context artifact, both committed run records, and continuation receipts. The suite uses one attempt and does not widen the default paid selection. ## What Changed - Resolve the retained local-board identity through current company membership and workspace authority. - Prepare required source dependencies before the isolated server imports native tool authority. - Explain the saved repository continuation in production completion tools. Correct only the exact pending-checkout blocker backed by a live receipt. Reject an unfinished response wait without a real response source. - Preserve the persisted task-session workspace source and its explicit absence of root repository context. Permit Git's exact no-repository result only for a validated plain task directory. Keep other Git errors and linked metadata strict. - Revalidate server-resolved same-agent continuation values against current ownership and the saved kind, summary, and key. Carry this shape through the internal bridge schema. Keep provider-facing schemas restrictive. - Preserve terminal result authority after a correlated successful controller response. Controller rejection creates no result authority. Bind the shared guidance and transport source in Copilot v55 and preserve historical identities. - Admit native status wakes with the existing no-coalescing contract. The existing deferred queue retains a distinct future dispatch instead of retagging the finishing run. - Recover deferred conversation lineage through the actual admitted dispatch. Accept a null outbox run binding only with matching decision, effect, dispatch actor, idempotency, task, company, agent, and requester evidence. Reject a conflicting nonnull binding. - Independently grade retained random context, actual checkout bytes and HEAD, accessible output, distinct continuation receipts, and admission order. ## Verification - Real database and Git regressions fail before their repairs. Prior focused cohorts cover local-board authority, optional repository waits, plain task directories, and first/reused workspace provenance. - The new valid decision/effect-backed assembled-heartbeat regression reproduces coalescing into its active predecessor before the queue repair. With the repair, it dispatches one successor after the predecessor finishes. Duplicate sweeps create no extra run. - The deferred-outbox conversation regression fails before its repair. The repaired test also rejects a conflicting predecessor binding. - The current queue, continuation, publication, cancellation, stale-admission, and domain cohort passes 344 checks across 11 suites. Server and Product E2E typechecks pass. The strengthened automatic-repository oracle passes 34 calibration checks. - Three omitted/null/resolved forms pass through the compiled Rust runner and controlled provider. The prior shared bridge cohort passes 492 TypeScript checks and 399 Rust core checks. Runner source identity, TypeScript, Rust formatting, and locked Rust typechecks pass. - Six real local development cells passed ordinary repository, conversion, and necessary-question journeys. Independent artifacts and rendered question/result evidence agree. They do not qualify staging or Slack. - Both latest automatic-repository attempts delivered correct files but failed the strict continuation check. They remain failures. A fresh replay of this queue repair is pending. - On the combined candidate `380047f4b923807a8c4f7ef6016e4fe130ab4a3a`, `pnpm -r typecheck` and `pnpm build` pass. Product E2E support passes 3,525 checks with two existing skips, plus 128 source checks. The complete local `pnpm test:run` is running and is not yet a pass. - The first replay selection failed catalog validation due to an operator profile-ID error. A second selection used the wrong default-model suite and was cancelled before any provider job existed. Both setup attempts remain recorded. The corrected campaign selects the recorded GPT-6.1 and Opus 5.5 models plus the local Stop/resume journey. - Exact-head CI, review, and deployment acceptance remain pending. GitHub reports delayed PR updates and webhook delivery; the current head and checks have now propagated. No earlier-head green badge establishes acceptance of this commit. ## Risks This changes several boundaries of repository setup. Full product and deployment acceptance remain required. The queue uses the existing deferred admission and delivery contracts. Batch deduplication remains in place. The provenance repair requires the actual bound dispatch and does not grant publication authority. Current authorization is still checked at publication. No accepted provider result is rewritten, and completed provider work is not rerun to repair persistence or delivery. ## Model Used OpenAI Codex, GPT-6 family, with repository tools and code execution. The runtime does not expose its exact deployment ID or context-window size. Those values are not inferred. ## Checklist - [x] I have included a thinking path that traces from project context to this change - [x] I have specified the model used (with version and capability details) - [x] I have checked ROADMAP.md and confirmed this PR does not duplicate planned core work - [x] I have searched GitHub for duplicate or related PRs and linked them above - [x] I have either (a) linked existing issues with `Fixes: #` / `Closes #` / `Refs #` OR (b) described the issue in-PR following the relevant issue template - [x] I have not referenced internal/instance-local Paperclip issues or links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip` URLs) - [x] My branch name describes the change (e.g. `docs/...`, `fix/...`) and contains no internal Paperclip ticket id or instance-derived details - [x] I have run tests locally and they pass - [x] I have added or updated tests where applicable - [x] I have updated relevant documentation to reflect my changes - [x] I have considered and documented any risks above - [ ] All Paperclip CI gates are green - [ ] Greptile is 5/5 with no open P2s, recommendations, or follow-ups - [x] I will address all Greptile and reviewer comments before requesting merge --------- Co-authored-by: Paperclip <noreply@paperclip.ing> Co-authored-by: Paperclip <paperclip@paperclip.ing> |
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3ce8d976a9 |
Add experimental Paperclip Notebook MCP connection (#16984)
## Thinking Path > - Paperclip connects agents to external tools through saved accounts and per-action permissions. > - Notebook exposes artifact management through an ordinary remote MCP server with OAuth. > - A private pilot needs a hidden, default-off catalog and execution gate. > - Local file publishing belongs to Notebook, which can accept bounded file bytes through ordinary MCP tools. > - Paperclip therefore needs the connector registration and generic availability checks, with no file-transfer architecture. ## Linked Issues or Issue Description **Subsystem affected** Apps catalog, experimental feature metadata, connection setup, and connector availability. **Problem or motivation** Users need to connect Notebook as their Cloud account, assign its tools to agents, and retain Paperclip's normal Allowed / Ask first / Off rules. The private pilot must remain hidden until an operator enables it. Notebook should own its upload protocol and local publishing script. **Proposed solution** Register a personal remote MCP OAuth connection at Notebook's canonical endpoint. Reuse existing OAuth discovery, credential storage, refresh, reconnect, and removal. Enforce availability through generic catalog feature metadata and saved application identity. Keep Notebook's standalone uploader in its own service repository; it calls the ordinary gateway and receives no saved OAuth credential. **Alternatives considered** A gallery-only filter permits retained tools and deep links while disabled. A shared workspace publisher and private upload-ticket transport add runtime behavior that a normal MCP connector does not require. Notebook can receive file bytes directly through its own tools instead. **Roadmap alignment** This extends Connected Apps and supports Artifacts and Work Products. ROADMAP.md and related PRs were checked. This PR is standalone on master. The separate OAuth lifecycle and file-transfer proposals (#17085 and #17086) are closed and are not dependencies. ## What Changed - Register Notebook's personal MCP OAuth method, canonical endpoint, scopes, catalog metadata, and branding. - Declare managed `enablePaperclipNotebook` with false defaults and no user-facing settings toggle or staging opt-in. - Use generic availability metadata for gallery/setup, retained connection identity, OAuth completion, health, tool/context discovery, and dispatch. Resources/prompts recheck before credentials, including retained handles. Removal remains available while disabled. - Resolve catalog application identity from the saved application key, so editable connection labels cannot bypass the hidden gate. - Select a method's sole supported credential kind when no kind is supplied. - Keep UI changes to metadata-driven availability and existing setup/reconnect controls. - Document Notebook's service-owned upload script, inline publication, ordinary action policies, and credential behavior. - Add ordinary MCP OAuth, assignment, action-policy, disabled-state, settings, and catalog tests. No workspace contribution registry, private transfer endpoint, native publisher, Runner file-reader change, or Paperclip CLI upload command is included. The entire native-runtime and CLI trees match master. Upload code lives in `paperclip-cloud/notebook/`. ## Verification Source head: `65ef741e4f476c67425b57d2fb2d6d4c00e99b06`, directly on master `53732c811bb69655eb43d3d12f2063ae4ca5ad67`. The diff is 42 files. Shared execution changes only enforce generic catalog availability; tool access also resolves saved application identity and the sole supported credential kind. Neither module contains Notebook upload logic. - Catalog/shared/settings/UI suites: 592 tests passed across 12 files. Shared/server/UI typechecks passed using installed compilers. - Fresh real PostgreSQL generic MCP suite: 84/84 passed at final source; server typecheck and module boundaries pass. Coverage includes personal OAuth, ordinary refresh/reconnect, assignments, Allowed / Ask first / Off, hidden feature enforcement, and local credential removal. Four new resources/prompts cases failed against the prior code and pass after filtering saved application identity and rechecking before credentials. They prove missing/relabelled setup markers and stale eligibility cannot dispatch or read secrets while disabled; an ordinary provider remains available with the flag off. - The full tool-access service suite passed 463/464 cases. One unchanged Google Workspace `slides.write` case timed out at 15 seconds; it passed on one isolated retry without source or timeout changes. Its exact test block matches master. The cause is not established; final-head CI must qualify the complete suite. - Maps, module boundaries, token gates, and whitespace checks passed. Byte comparisons confirm the former transfer/runtime/CLI surfaces match master. - Fresh exact-head Greptile is 5/5 with zero unresolved findings after an exhaustive feedback audit. Current-head CI workflow [39625691137](https://github.com/paperclipai/paperclip/actions/runs/39625691137) succeeded, including both required checks (`ci / verify`, `ci / e2e`), Build, and browser E2E. Supplementary security/advisory scan status is recorded in the PR Checks panel and qualification receipt; prior-head scans are not counted. The superseded `4bd7af9b2e` completed CI successfully, but Greptile found the valid resources/prompts availability gap described above. It was fixed, replied to, and resolved; earlier-head results do not qualify this revision. Preserved environment failures: the first socket-restricted UI/route run had 93 listener setup failures, and the same 93 cases passed with local-socket access. The package-manager launcher could not fetch its signature metadata; installed compilers passed without dependency or configuration changes. The full service timeout and isolated retry remain recorded separately. The superseded `585e870e73` CI also failed an unchanged agent-chat project-plan revision assertion after task creation; the complete spec and relevant runtime sources match master, and a same-master prior run passed. Its cause is not established. Logs are preserved; no test or timeout was weakened and no old-head rerun was requested. The subsequent heads run full CI independently; no prior-head pass substitutes for current qualification. The Notebook uploader requires a separate service release. This public PR adds no uploader runtime to Paperclip and claims no newly deployed browser/agent acceptance. The Notebook-owned upload path is qualified separately. Code-owner review remains required before merge. ## Risks - The feature flag gates the curated connector; it does not create a Notebook service-side team allowlist or block arbitrary standard MCP URLs. - Publishing, sharing, and deletion retain the existing assignment and action-policy boundaries. - The hidden feature must be checked for retained tools and saved identity, including when connection labels change. - Disconnect removes local credentials. It does not revoke the remote Notebook authorization; the owner can revoke it in Notebook. - Ordinary refresh uses the existing client. A lost response after refresh-token rotation can require reconnect. - The standalone Notebook script and its bounded upload tools must ship together in the Notebook service before that documented convenience path is available. - No database schema, workflow, lockfile, shared transfer, or Runner change is included. No merge, deployment, or rollout is performed by this update. ## Model Used OpenAI GPT-6 in Codex, with reasoning, repository inspection, code execution, and tool use. The runtime did not expose a more specific model ID or context-window size. ## Checklist - [x] I have included a thinking path that traces from project context to this change - [x] I have specified the model used (with version and capability details) - [x] I have checked ROADMAP.md and confirmed this PR does not duplicate planned core work - [x] I have searched GitHub for duplicate or related PRs and linked them above - [x] I have either (a) linked existing issues with `Fixes: #` / `Closes #` / `Refs #` OR (b) described the issue in-PR following the relevant issue template - [x] I have not referenced internal/instance-local Paperclip issues or links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip` URLs) - [x] My branch name describes the change (e.g. `docs/...`, `fix/...`) and contains no internal Paperclip ticket id or instance-derived details - [x] I have run tests locally and they pass - [x] I have added or updated tests where applicable - [x] I have updated relevant documentation to reflect my changes - [x] I have considered and documented any risks above - [x] All Paperclip CI gates are green - [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups - [x] I will address all Greptile and reviewer comments before requesting merge --------- Co-authored-by: Paperclip <noreply@paperclip.ing> |
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00331e0254 |
Connect native Runner admission to plugin-owned workspaces (#16978)
## Thinking Path > - Paperclip manages work for AI agents. > - A plugin can own an execution environment and its files. > - #17029 supplies the task driver and bounded setup verification. > - Heartbeat still prepares workspace files on Core and expects a shell transport. > - This PR gives the selected plugin ownership of workspace preparation and native task execution. > - Core keeps admission, tool authority, and recovery checks. ## Linked Issues or Issue Description **Subsystem affected** Heartbeat workspace admission and native Runner execution. **Problem or motivation** A task-only plugin cannot run through Core filesystem staging or shell execution. Native admission and recovery must use the same lease and workspace ownership. **Proposed solution** Use the task driver from #17029. Resolve workspace and project identities without Core file operations. Connect native dispatch and restart recovery to that driver. **Alternatives considered** Keep workspace admission and dispatch in one change. A workspace change alone would leave dispatch on the previous transport. An execution change alone would leave Core staging files for the wrong host. ## What Changed - Enable plugin environment selection for native workspace sessions. - Resolve workspace metadata and authorized project references without Core checkout, copy, or provision operations. - Preserve agent-default and primary workspace policies. Use the pinned workspace provider for plugin-backed project storage. Reject unsupported Core service commands and cross-owner reuse. - Connect native execution to the prepared task driver. Keep assigned MCP authority on Core. - Save exact checkpoint identity, transfer selected account refreshes, and require termination proof before replacement or cleanup. - Complete managed plugin workspaces through their storage provider. Use the same check after a restart. Keep branch validation and leave task-owned files on the plugin. - Include default instruction content in runtime synchronization when no instruction directory exists. - Defer new-agent Copilot verification until the saved-agent lifecycle can acquire the agent-owned computer. ## Verification - Rebased onto `origin/master` at `898144f4b3`. Master advanced once during verification. Both manual conflicts joined import blocks: one in `native-session-executor.ts`, and one in `heartbeat/runtime-execution.ts`. The seven patches retain their logic. The first rebased head passed repository typecheck, build, all 862 focused execution/finalizer cases, and all CI gates. The latest head `93e5a72892` passes server typecheck and all 880 focused execution, finalization, and execution-control notification tests. All 54 CI/review checks pass, with two expected skips. Greptile ran automatically and scored this head 5/5 with no unresolved findings. No new review or Apex request was made for these import-only resolutions. - The successful CI workflow initially left three stale job-check reports. Targeted policy and summary reruns cleared the reports. No source change or test fix was needed. - Repository typecheck and build pass: `pnpm -r typecheck` and `pnpm build`. - Focused native execution and restart tests pass: 795 cases. The account and harness suites pass: 159 cases. Workspace admission passes: 48 cases. The SDK task lifecycle, workspace API, runtime-hook, and instruction checks also pass. - The heartbeat integration case uses the merged workspace provider contract and reaches native dispatch with no project files on Core. The new-agent case confirms that creation leaves the agent in `preparing` until lifecycle verification. - Map validation and the Copilot source-identity check pass. No Runner implementation or source-identity bump is in this PR. - The first rebased workspace run found two stale path assertions and a recovery guard that did not recognize task-owned targets. These are fixed. The storage integration fixture also needed its persisted source binding; the production authorization check stays in place. - Two prior review findings required rejection of Core service startup and cross-owner workspace reuse. The existing admission fixtures now check both failures. The installed-account authentication finding was fixed in merged #17029. - Tests reuse the current fixtures. No new provider test matrix or live Runner process is added for these fixes. - The prior head `2db273ec12` passed CI on its first attempt and reached standard Greptile 5/5. Apex scored 4/5 and found local-folder checks during plugin completion and recovery. - The completion fix reproduces both failures. It passes all 110 cases in the runtime execution, workspace finalizer, and workspace provider integration suites. Server typecheck and map checks pass. CI passed on `62d8335b4e` on its first attempt, and standard Greptile scored 5/5. The next Apex review scored 4/5. It found that a failed plugin inspection could abort restart recovery. - The restart fix records a failed workspace receipt and uses the current run retry policy. A regression first reproduced the aborted pass. It now checks retry state, retained results, and completion of another workspace in the same pass. All 68 finalizer cases and server typecheck pass. CI passed on `7d4016323b` on its first attempt. Standard Greptile and Apex both scored 5/5. Apex left one P2 about lost failure codes. - The diagnostic fix keeps the known branch and owner mismatch codes in receipts and run recovery state. It gives repair guidance for those codes and keeps unknown plugin errors generic. All 96 affected finalizer cases and server typecheck pass. Before the rebase, required CI passed on `c2fa61c6c8` on its first attempt. Standard Greptile and Apex both scored 5/5 on that head, with no unresolved findings. The new head retains these reviewed patches. - The earlier Superagent scan on `c2fa61c6c8` was inconclusive after a pinned merge-base checkout failed or timed out. The current scan on `93e5a72892` passes. - The exact rebased head passes all 48 workspace cases and server typecheck. The first local test launch could not bind PostgreSQL inside the sandbox. The authorized local-server run passed. - The prior head reached standard Greptile 5/5. Its first CI run hit an unchanged Runner cleanup timeout and an external build-runner shutdown. Both jobs passed on the single retry. The timeout cause is not established. - A local regression check found that a retained Core workspace could also enter a plugin task without file transfer. Core now rejects this move before provider work. The existing ledger test covers both directions and confirms that the source files stay intact. - The first active standard review scored 4/5. It found that a fresh plugin retry could enter Core Git preparation. This mode now uses the existing unsupported-storage error before workspace resolution or acquisition. Both unsupported-mode cases pass, and server typecheck passes. - No live Cloud or provider validation was run. ## Risks - The prerequisite #17029 is merged. This PR targets master. - Native plugin tasks support per-turn workspace sessions. Core service commands and fresh retries that import retained files remain unsupported. A workspace storage plugin can use the modes and strategies it declares. - Core-managed credentials support Codex and direct Claude accounts. Other managed credential routes fail closed. Other harnesses can use an installed account. - A provider must preserve its prepared configuration and report process termination correctly. Uncertain termination keeps the task pending cleanup. - Cloud deployment and live provider validation remain separate. ## Model Used OpenAI Codex, GPT-6. The exact model ID and context window are not exposed in this session. Tool use includes code editing, local tests, and the GitHub CLI. ## Checklist - [x] I have included a thinking path that traces from project context to this change - [x] I have specified the model used (with version and capability details) - [x] I have checked ROADMAP.md and confirmed this PR does not duplicate planned core work - [x] I have searched GitHub for duplicate or related PRs and linked them above - [x] I have described the issue in-PR following the relevant issue template - [x] I have not referenced internal/instance-local Paperclip issues or links - [x] My branch name describes the change and contains no internal issue details - [x] I have run focused tests locally and they pass - [x] I have added or updated tests where applicable - [x] I have updated relevant documentation to reflect my changes - [x] I have considered and documented any risks above - [x] All Paperclip CI gates are green - [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups - [x] I will address all Greptile and reviewer comments before requesting merge --------- Co-authored-by: Paperclip <noreply@paperclip.ing> |
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898144f4b3 |
fix: stop idle execution-control recovery polling (#17094)
Replace idle execution-control polling with workers driven by committed writes and persisted deadlines. Preserve startup recovery, bounded retries, and shutdown safety. Stabilize the Slack setup browser regression by waiting for the restored setup screen before simulating its webhook. Co-Authored-By: Paperclip <noreply@paperclip.ing> |
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c6ee96a3df |
fix: stop idle MCP event polling (#17036)
## Thinking Path > - Paperclip is the open source app people use to manage AI agents for work. > - MCP task subscriptions and Dot mailboxes notify external clients when work changes. > - Their delivery workers queried SQL every two seconds, including when no work existed. > - Those queries prevent idle databases from becoming quiet across many hosted instances. > - Existing activity, mailbox, subscription, and delivery records already preserve the work. > - This pull request uses committed-write signals and saved retry deadlines to drive delivery. > - Idle subscriptions become quiet while startup, retry, drain, and shutdown recovery remain supported. ## Linked Issues or Issue Description Related sleep migrations: #15625, #17000, #17008. Searched open PRs and issues for MCP event sleep/polling work; no duplicate found. **What happened?** Each public MCP and Dot event service started a two-second interval. It checked settings, scanned subscriptions, created delivery receipts, cleaned expired records, and attempted delivery even without changes. **Expected behavior** An empty or subscribed-but-idle service produces no recurring SQL or network traffic. Committed events trigger prompt delivery. Only unfinished work retains a retry deadline. **Steps to reproduce** Configure a public MCP origin and start the server. Observe recurring settings queries with MCP disabled, or subscription/queue queries with it enabled. No incoming task changes are required. **Paperclip version or commit** Initially inspected master at `8b4ab65b1c3d863d282752e83307943720a5c85c`; rebased onto `c2daf906d9` after master advanced. The only conflict was overlapping imports in the heartbeat queue; both were preserved. ## What Changed - Register separate MCP and Dot workers with the existing delivery coordinator. Remove both unconditional intervals. - Notify from committed activity, comment, mailbox, subscription, and experimental-settings writes. Centralize comment insertion in one small helper so normal callers do not manage recovery state. - Preserve outer transaction ownership, uncertainty reconciliation, and requests deferred during drain or standby. - Restore delivery retry/abandoned-claim deadlines on startup. Scan subscriptions in pages of 20; drain full source and delivery batches without another external event. Scope subscription refreshes to their subscription or shared Dot binding, issue activity to its task, comment discovery to its company, and mailbox/assignment changes to their binding. Retry deadlines do not rescan unchanged sources. - Run expired-record cleanup opportunistically. Preserve on-use expiry checks and the existing one-time automatic Dot challenge behavior. - Add real PostgreSQL lifecycle coverage and guarded external test database options for existing MCP/Dot integrations. Document producers and the supported writer model. ## Verification - Final head `e54fb34485921016ef988f7df9cca173a9ebdfc8`: all CI checks passed (55 successful checks/statuses, one neutral review, two intentionally skipped Storybook checks). Mergeable with no unresolved review threads. Greptile: 5/5 on this exact commit; security scan passed. - All 284 affected tests passed in one local run after rebasing: 16 real-PostgreSQL lifecycle tests, 24 coordinator/scheduler/standby tests, 84 public MCP tests, 54 Dot runner tests, and 106 interaction-service tests. - Server TypeScript passed after refreshing generated Runner/plugin SDK dependencies from master. Full workspace typecheck and build passed before the rebase; final CI repeated typecheck and build successfully on the rebased head. - Coverage includes SQL/network quiet with configuration and history, committed writes, outer commit/rollback, drain/standby, retry restoration, reenable/unsubscribe, concurrent writes, shutdown, source/delivery/subscription batch boundaries, Dot challenges and reconnects, native broker fences, comment discovery, and company-isolated scans. - CI exposed an existing lock-order test whose insert proxy missed nested transactions and waited indefinitely. The fixture now observes nested inserts, preserves the lock assertion, and fails explicitly if interception is missed. The complete 106-test interaction suite and the formerly hanging CI shard pass. The warm-standby/settings test doubles were also updated for the new coordinator/transaction boundaries. - Earlier fixture failures (required timestamps, cleanup, external database selection, async waits) were corrected. One existing OAuth first-poll timing assertion and one E2E company-cleanup race passed on single reruns; the final full CI run passed without a rerun. No OAuth or company-deletion behavior was changed. - The local full `pnpm test:run` attempt could not initialize embedded PostgreSQL after five attempts. It was stopped; affected integrations were verified with separate disposable PostgreSQL 17 databases, and final CI supplied the full-suite result. Embedded-only local skips are not counted as passes. ## Risks - Notifications use one live server/database scope. Independent SQL writers and separate live replicas do not trigger these process-local workers. Startup recovers durable state; continuous multi-writer discovery needs a notification/ingress contract. - Idle physical cleanup waits for startup or another enabled sweep. Subscription and authorization expiry remain enforced on use. - Existing delivery claims, retry bounds, signatures, and receipt deduplication remain in place. No new tables or migrations. - Host sleep-safety checks remain conservative. MCP/Dot retry deadlines are not yet covered by Paperclip Cloud's scheduled-wake contract. This proves worker quiet, not deployed host suspension or fleet savings. ## Model Used OpenAI Codex (GPT-6), with reasoning, local code execution, and tool use. The runtime does not expose a more specific model version or context-window size. ## Checklist - [x] I have included a thinking path that traces from project context to this change - [x] I have specified the model used (with version and capability details) - [x] I have checked ROADMAP.md and confirmed this PR does not duplicate planned core work - [x] I have searched GitHub for duplicate or related PRs and linked them above - [x] I have either (a) linked existing issues with `Fixes: #` / `Closes #` / `Refs #` OR (b) described the issue in-PR following the relevant issue template - [x] I have not referenced internal/instance-local Paperclip issues or links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip` URLs) - [x] My branch name describes the change (e.g. `docs/...`, `fix/...`) and contains no internal Paperclip ticket id or instance-derived details - [x] I have run tests locally and they pass - [x] I have added or updated tests where applicable - [x] I have updated relevant documentation to reflect my changes - [x] I have considered and documented any risks above - [x] All Paperclip CI gates are green - [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups - [x] I will address all Greptile and reviewer comments before requesting merge --------- Co-authored-by: Paperclip <noreply@paperclip.ing> |
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eaacadeba3 |
fix(recovery): let preservation owners reopen retained sources (#17053)
## Thinking Path > - Paperclip is the open source app people use to manage AI agents for work. > - Recovery must save retained workspace files before ordinary execution can resume. > - The environment runtime blocks access to retained sources to prevent unsafe reuse or deletion. > - The recovery worker also used that ordinary resume path. > - The guard returned no lease, so recovery reported an invalid source binding before it could save files. > - This pull request gives the physical preservation owner a separate, source-bound resume path. > - Ordinary execution and destructive cleanup keep their existing guards. ## Linked Issues or Issue Description Refs #16965. **What happened?** A retained workspace with a workspaceRestoreRecovery marker could not recover through the real environment runtime. The runtime returned null before calling the provider. Recovery classified this as source_binding_invalid. Earlier recovery fixtures replaced the runtime facade, so they did not exercise this guard. **Expected behavior** The verified preservation owner can reopen its exact stopped allocation to save files. Other callers remain blocked. Recovery preserves newer local files and does not start another agent or repeat a completed external action. **Steps to reproduce** 1. Seed a terminal source run with a retained sandbox, a recovery action, and the workspaceRestoreRecovery lease marker. 2. Give the source a verified stop receipt. 3. Call recoverRetainedWorkspace through environmentRuntimeService. 4. Before this change, the recovery action returns to blocked with source_binding_invalid. No files are copied. **Paperclip version or commit** Reproduced on master at |
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30b753f614 |
perf(budgets): scope accounting and deliver enforcement asynchronously (#17046)
## Thinking Path > - Paperclip manages AI agents and their paid work. > - Budgets must prevent new work and stop reported overruns. > - Cost settlement also ran serial lifecycle reconciliation for every eligible company agent. > - That made request latency grow with unrelated idle agents and delayed results on stop delivery. > - This change separates atomic admission and accounting from durable asynchronous enforcement. > - Scoped live usage detects overruns without writing provisional ledger charges. > - The result is constant query scope for ordinary settlement and recoverable stop delivery. ## Linked Issues or Issue Description **What happened?** Settlement and budget checks entered company-wide lifecycle reconciliation. A company with 1,000 unrelated idle agents performed 1,001 accounting transactions for one ordinary cost evaluation. User requests could also wait for provider termination. Running usage checkpoints did not enforce reported monetary exposure. **Expected behavior** Keep the final reservation gate authoritative. Commit charges, scope blocks, and enforcement intent before returning. Deliver stop requests after commit. Read only applicable policies and execution scopes for ordinary charges. Stop long-running work when supported reported or priced usage establishes an overrun. **Steps to reproduce** 1. Create a disposable company with one company budget and idle agents. 2. Evaluate a charge below the budget with 0, 17, and 1,000 unrelated idle agents. 3. Compare query counts, company accounting transactions, and duration. 4. Use the controlled partial-usage and delayed-stop fixtures to check enforcement and request responsiveness. **Paperclip version or commit** The measured baseline is `6c9b87d0922f1ebfc43e8b0c36889ac5ba7b9837` from `master`. Related public work: Refs #16976, #2006, #3539, #13763, #14296, #16853, #13075. These cover the affected service charge, cancellation, and accounting paths. This change removes their shared reconciliation overhead. ## What Changed - Batch applicable policy exposure under the existing company accounting lock. Preserve exact fractional money and zero-reservation dispatch fences. - Commit a durable final budget dispatch claim before provider I/O. Retain a separate final issue/run ownership transaction through synchronous handoff, without holding the company accounting lock or awaiting provider work. Preserve native recovery lease checks and duplicate handoff fencing. Browser handoff rechecks current policy; it reuses a consumed rate slot only for the identical policy generation. - Separate ledger spend, live observed spend, and effective held capacity. Use the maximum of reservation and live observation for each unfinished operation. - Deliver budget cancellation through the existing coordinator. Revalidate generations and persist queued/running stop fences before external termination. Bound stop concurrency to four. - Apply agent holds only to the affected agent. Project budgets leave other projects running. Project real company transitions in bounded lifecycle batches. - Replace periodic broad reconciliation with durable pending work, startup repair, receipt replay, and concrete retry/window deadlines. Retain drain and idle-safety checks. - Enforce accepted cumulative usage checkpoints without provisional charges. Final accounting atomically replaces live exposure and settles reservations. - Add operator-gated budget spans, regression coverage, map updates, and a real-PostgreSQL comparison harness. No schema or first-party telemetry change. ## Verification - Full workspace `pnpm -r typecheck` passes on the final ownership fix, rebased onto `bbcf5dfe98`. Production `pnpm build` passes on final head `4c5f4de8b1`. Map, module-boundary, token, and Storybook catalog checks pass. - Focused real-PostgreSQL coverage includes the 292-case rebased accounting/dispatch run, 63 browser cases, 52 run-control/cancellation cases, 42 policy-generation cases, 77 lifecycle/commentary cases, and the exact Muse confirmation regression. Native executor unit coverage passes all 768 cases. Final ownership coverage passes: 74 adapter/use-case cases, nine public regression cases, and the additional deleted-project race. These exercise competing ownership, budget changes and charges between phases, zero/nonzero duplicate claims, rollback, recovery contention, read-only capacity rechecks, and controlled HTTP startup after commit. Another 74 pure/startup/tracing cases pass. The complete CI matrix and both 5/5 reviews passed on `1ac9b58`; its external security scan identified a stale-owner handoff race. The final fix restores synchronous issue/run ownership fencing after the accounting transaction commits. Final head `8e84f55ce8` has fresh Greptile 5/5 with zero new comments, Paperclip review 5/5, and a passing security scan. The complete latest-head [CI matrix](https://github.com/paperclipai/paperclip/actions/runs/39535189808) passes, including budget, browser, Runner, build, and canary jobs. The unchanged Runner close fixture passed on its sole same-head job retry. - Broad local `pnpm test:run` invocations were stopped before required source updates (rebase and review fixes). They are not claimed as full passes. Final full-suite coverage comes from the complete latest-head CI matrix; local focused coverage and the incomplete broad invocations are reported separately. - Reproduce performance with `pnpm --filter @paperclipai/server exec tsx ../scripts/benchmark-budget-enforcement.ts --baseline-ref=6c9b87d0922f1ebfc43e8b0c36889ac5ba7b9837`; repeat with `--reverse`. The harness uses disposable real PostgreSQL, 20 warm samples per variant/count, and records raw timings, SQL/lock counts, agent reads, unchanged agent state, and query plans. Final production-source measurement revision: `eff713a4f72c7f4b7a4002a701cb481d4bfccd95`; the extended harness is committed in `4c5f4de8b1`. | Unrelated idle agents | Baseline median / p95 | New median / p95 | Baseline SQL / locks | New SQL / locks | New agent reads | | --- | ---: | ---: | ---: | ---: | ---: | | 0 | 1.80 / 2.33 ms | 2.99 / 3.88 ms | 5 / 1 | 7 / 1 | 0 | | 17 | 15.53 / 19.55 ms | 2.24 / 2.60 ms | 90 / 18 | 7 / 1 | 0 | | 1,000 | 978.35 / 1,790.43 ms | 2.16 / 2.52 ms | 5,005 / 1,001 | 7 / 1 | 0 | - These measurements use local PostgreSQL 18.1 and Node 26.4.0 arm64. They isolate the cost-evaluation core and complete admission path, without hosted-region or provider latency. Prior-revision reversed-order controls also preserved the constant query counts; the final measurements above use the final production source. - Complete reserve → final ownership gate → immediate offline provider result is measured separately, with one responsible agent and one active operation at each unrelated-agent count. Admission p95 baseline/new: 0 agents **11.54 / 29.77 ms**; 17 agents **9.31 / 27.62 ms**; 1,000 agents **24.51 / 74.05 ms**. Baseline admission was already scoped; the stronger final fence adds bounded overhead. New counts stay constant at 53 Drizzle statements, three transactions, two company-accounting locks, and five agent-reading statements bound to the responsible agent. Zero unrelated-agent reads, exactly one provider callback per sample, and no leftover runs or holds. All admission scenarios stay below 250 ms. No external provider calls are included. - The partial-usage/delayed-termination fixture passed 20/20: receipt persistence p95 13 ms, receipt return to observed durable Stop fence p95 28 ms, complete receipt-start-to-fence p95 50 ms, unrelated database request p95 1 ms while termination was blocked. After releasing the controlled termination fixture, acknowledgement p95 was 14 ms. These are separately measured phases; fixture acknowledgement is not live-provider termination latency. - Models and provider deadlines are unchanged. No deployment, live inference, or staging acceptance is claimed. A quiet 30-minute follow-up waits for the merged revision on staging, then repeats classifier and controlled budget-stop acceptance in staging, recording hosted bookkeeping, queue delay, and actual provider acknowledgement separately. - Development failures retained: finalizer notification regressions (fixed; 27/27 affected cases passed), invalid browser admission fixture assumptions (fixed; browser coverage now passes 63/63), and first-head lifecycle/dispatch CI regressions (reproduced and repaired). A prior-head Cases E2E test hit its unchanged announcement-dismiss handler race while opening a filter; the same journey passed on `1ac9b58`. The external security review then found a stale-owner race between accounting commit and provider entry; final verification covers a competing run in that gap while retaining provider I/O outside the accounting lock. Early PostgreSQL startup attempts hit local semaphore pressure; serial reruns succeeded. The final-head Runner lane had one failure among 1,823 tests: the unchanged `timeout-attachment` fixture failed at its first process close after 6.28 seconds. The sole same-head job retry passed all 1,819 active tests (four skipped), including that fixture in 1.85 seconds. Three isolated local probes could not run correctly because the Rust fake-provider fixture binary was absent; cleanup masked the original startup failure. CI builds that fixture through its normal lane. These probes are inconclusive and are not counted as passes. ## Risks - This changes accounting, lifecycle, and cancellation ordering. Durable generations, source/sequence checks, ownership leases, and company locking remain required for correctness. - Provider stop acknowledgement can be slow or fail. Stop intent remains pending until existing termination proof succeeds; cancelled row status alone does not acknowledge delivery. - Mid-run limits depend on provider usage reports or supported price calculations. Providers that report only at completion cannot provide exact mid-call detection. - Signals are process-local wake hints for the supported single-active-writer model. Durable state and startup recovery remain authoritative. - There are no migrations, new queue tables, or cached balances. Repeat the classifier and controlled budget-stop acceptance after normal rollout. ## Model Used OpenAI Codex, based on GPT-6, with reasoning, tool use, code execution, and parallel coding agents. The host does not expose the exact backend model revision or context-window size, so those values are not asserted. ## Checklist - [x] I have included a thinking path that traces from project context to this change - [x] I have specified the model used (with version and capability details) - [x] I have checked ROADMAP.md and confirmed this PR does not duplicate planned core work - [x] I have searched GitHub for duplicate or related PRs and linked them above - [x] I have either (a) linked existing issues with `Fixes: #` / `Closes #` / `Refs #` OR (b) described the issue in-PR following the relevant issue template - [x] I have not referenced internal/instance-local Paperclip issues or links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip` URLs) - [x] My branch name describes the change (e.g. `docs/...`, `fix/...`) and contains no internal Paperclip ticket id or instance-derived details - [x] I have run tests locally and they pass - [x] I have added or updated tests where applicable - [x] I have updated relevant documentation to reflect my changes - [x] I have considered and documented any risks above - [x] All Paperclip CI gates are green - [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups - [x] I will address all Greptile and reviewer comments before requesting merge --------- Co-authored-by: Paperclip <noreply@paperclip.ing> |
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dff63551fe |
fix: resume unfinished work after repository preparation (#17047)
## Thinking Path
> - Paperclip manages agents that perform work for a company.
> - Task repositories are prepared at normal run admission.
> - A running native task can stage a repository while its work remains
unfinished.
> - The controller did not offer that saved setup as a continuation.
> - The agent could add a timer or wait for a user restart.
> - This change uses the existing same-agent continuation and status
ledger.
> - The accepted explanation and proven conversation remain available
after setup.
## Linked Issues or Issue Description
Refs #17045. That prerequisite has merged. This PR targets master.
**What happened?**
A projectless native task can request a repository for the next
admission. An unfinished task has no server-selected repository
continuation. An explicit same-agent continuation also loses chat
provenance.
**Expected behavior**
An unfinished standard task can yield and resume through the existing
admission queue. Its explanation and final result retain the authorized
conversation. A task that only stages a repository can complete without
another run.
**Steps to reproduce**
1. Start a native standard task in a task directory.
2. Request an authorized repository through prepare_repository.
3. Yield with unfinished work and no explicit continuation.
4. Observe that the former driver rejects the yield, although the
pending repository is saved.
## What Changed
- Offer a saved same-agent continuation for the current task's pending
repository.
- Accept that current server continuation in the shared provider driver.
- Resolve chat provenance through applied status decisions, delivered
effects, and admitted wakes.
- Preserve accepted setup explanations without repeating an owned
question card.
- Document optional reproduction details and configured repository
discovery.
- Extend database regressions and workspace access maps.
- Preserve Copilot profile v52 and bind the shared continuation source
in v53. Include the active identity in the QA image fingerprint.
## Verification
- Five focused server suites: 100 checks pass.
- Shared continuation driver: 12 checks pass.
- Server typecheck passes.
- Map contract and whitespace checks pass.
- Existing API and driver assertions fail on the former implementation.
- Real dispatcher and queue cohort: 43 checks pass. The original
reply-loss regression fails before the dispatch receipt fix.
- Continuation driver and installation identity cohort: 62 checks pass.
- Regenerated capability inventory and contract checks pass.
- Final response precedence cohort: 109 checks pass. The stale-comment
case fails on the former implementation.
- All required CI checks, build, and both source reviews pass on
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f3af9887ca |
fix(chat): keep each chat conversation in its own wake batch (#17054)
## Thinking Path > - Paperclip is the open source app people use to manage AI agents for work. > - Chat channels let a linked user talk to an agent from Slack, GitHub and other platforms. Each external thread is a chat conversation that is bound to one issue. > - One issue can have many conversations. A GitHub pull request review makes one conversation for each inline finding thread. > - When replies arrive behind an active run, the wake queue merges them into one deferred wake. The merge did not look at the conversation. > - A reviewed chat run can attest only one conversation. A merged batch from two threads always failed attestation with `setup_failed` / `reviewed_chat_execution_binding_not_authorized`, so no reply got an answer. > - This pull request keeps each chat conversation in its own wake batch. The single-conversation attestation check stays the same. > - The benefit is that replies in different review threads each get their own attested run, one after the other. ## Linked Issues or Issue Description Refs #16793 (related: chat origin during coalescing). No public issue exists, so the bug report follows. **What happened?** A linked user replied in three different inline review-finding threads of one pull request while the agent's review run was still active. The three wakes merged into one deferred wake. The promoted run failed in about 2 seconds with `setup_failed` / `reviewed_chat_execution_binding_not_authorized` and `providerWorkStarted=false`. None of the three replies got an answer. The failed-chat retry cannot recover this batch, because a retry source holds one conversation. **Steps to reproduce** 1. Bind two chat conversations (two GitHub finding threads) to one `in_review` issue. 2. Start a run for the assigned agent on that issue. 3. As the linked user, reply once in each thread. 4. Finish the active run. 5. See one promoted run that fails with `reviewed_chat_execution_binding_not_authorized`. **Expected behavior** Each thread gets its own run. Each run attests its one conversation and answers its reply. **Cause** `findExistingDeferredWake` matched on company, agent, issue and actor only. The active-run coalesce path had the same gap. `authorizeChatConversationForBoundRun` correctly denies a batch with more than one conversation. ## What Changed - `run-dispatch/domain/wake-context.ts`: add the `chatConversationId` wake-context key, a reader, and `wakeChatConversationsConflict`. A conflict means that both wakes have a conversation and the two conversations are different. - `issue-assignment-wakeup.ts` and `chat-channels/inbound/wakeups.ts`: stamp the conversation ID on each inbound chat wake. - `chat-channels/failed-run-retry.ts`: stamp the conversation ID on failed-chat retry wakes, so later replies do not merge into a retry from another conversation. - `wake-queue` admission: do not coalesce into an active run of another conversation. The deferred-wake lookup now matches only wakes of the same conversation or wakes without a conversation. - `heartbeat/queue.ts`: the same-scope queued or running coalesce target is skipped when the conversations conflict. - `doc/execution-semantics.md`: describe per-conversation chat wake batching. - Tests: an integration regression in the GitHub review block of `chat-channels.integration.test.ts`, and unit cases for the active-run branch in `wake-queue/application/use-cases.test.ts`. ## Verification - Red before the fix: `pnpm --dir server exec vitest run src/__tests__/chat-channels.integration.test.ts -t "replies in review finding threads"`. The main case fails with one run: `{ status: "failed", errorCode: "setup_failed", error: "reviewed_chat_execution_binding_not_authorized" }`. - Green after the fix, same command, 3 of 3 pass: - Replies in two finding threads give two successive runs. Each run succeeds, has `paperclipExternalChatExecutionBound: true`, and holds only its own comment and conversation. - Two replies in the same thread still give one run with both comments. - After the linked identity is revoked, each separated run is still denied (`setup_failed`) and the adapter does not execute. - `vitest run src/modules/wake-queue src/modules/run-dispatch`: all pass, with the new cases (different conversation, same conversation, run without a conversation, non-chat wake). - Related suites pass: `heartbeat-comment-wake-batching`, `durable-chat-wakeup`, `chat-failed-run-retry-boundary`, `issue-queued-comments-routes`, `heartbeat-stale-queue-invalidation`. - Full `chat-channels.integration.test.ts`: 823 passed, 1 timed out. The timed-out test (`GitHub terminal receipt composes pinned HTTP and durable source authority (held_token)`) passes alone with and without this change. The sandbox has a 4 GB memory cap. - Not run locally: `pnpm -r typecheck` and `pnpm build`. The server `tsc` process was killed at the 4 GB sandbox memory cap. CI runs both. - Runtime dependency note: the deferred-wake lookup adds one JSONB predicate to the existing deferred-wake query. It reads the same rows. The query count does not change. The integration regression runs it against embedded Postgres. ## Risks - Low risk. No schema change and no migration. - Behavior change: chat replies from different conversations on one issue now run one after the other, not in one batch. Before this change, such a batch always failed, so no working flow becomes slower. - Wakes without a conversation (non-chat wakes, and wakes queued before this deploy) keep the old coalescing. A deferred wake from before the deploy has no conversation key, so one later reply can still merge into it. That window closes when the queue drains. - The check keeps the single-conversation attestation in `authorizeChatConversationForBoundRun`. Revoked identities are still denied. ## Model Used - Anthropic Claude Opus 5.5 (`claude-opus-5-5`), in Claude Code through the Paperclip agent harness. It used tool use (shell, file editing, test runs) and extended reasoning. ## Checklist - [x] I have included a thinking path that traces from project context to this change - [x] I have specified the model used (with version and capability details) - [x] I have checked ROADMAP.md and confirmed this PR does not duplicate planned core work - [x] I have searched GitHub for duplicate or related PRs and linked them above - [x] I have either (a) linked existing issues with `Fixes: #` / `Closes #` / `Refs #` OR (b) described the issue in-PR following the relevant issue template - [x] I have not referenced internal/instance-local Paperclip issues or links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip` URLs) - [x] My branch name describes the change (e.g. `docs/...`, `fix/...`) and contains no internal Paperclip ticket id or instance-derived details - [x] I have run tests locally and they pass - [x] I have added or updated tests where applicable - [x] I have updated relevant documentation to reflect my changes - [x] I have considered and documented any risks above - [ ] All Paperclip CI gates are green - [ ] Greptile is 5/5 with no open P2s, recommendations, or follow-ups - [x] I will address all Greptile and reviewer comments before requesting merge 🤖 Generated with [Claude Code](https://claude.com/claude-code) --------- Co-authored-by: devinfoley <139239+devinfoley@users.noreply.github.com> Co-authored-by: Claude Opus 5.5 <noreply@anthropic.com> |
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65f59e339a | Extend native instance secrets to project lifecycle plugins (#17034) | ||
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c2daf906d9 |
fix: preserve task continuation and question delivery (#17045)
## Thinking Path
> - Paperclip manages agent work and delivers its results.
> - One task can need several runs and a saved workspace.
> - A run can succeed while the task waits for its next run.
> - Chat fallback treated that success as completion and dropped useful
status.
> - Monitor runs also lost their conversation origin, and text-question
cards lost their prompt.
> - This change preserves the task outcome and exact delivery authority
across those boundaries.
## Linked Issues or Issue Description
**What happened?**
A Slack task requested a repository, yielded to a scheduled
continuation, and showed only a generic completion message. The next run
could not publish through the original conversation. A later text
question showed its title and Respond button without the question
context. Workspace recovery could commit the saved monitor result
without restoring its explanation.
**Expected behavior**
The original conversation shows the accepted continuation explanation,
receives the resumed result, and displays the full question when input
is needed. A successful provider run does not claim that unfinished work
is complete. Recovery delivers saved output once without another
provider result.
**Steps to reproduce**
Start an authorized chat task, prepare a repository for a later
admission, save a monitor wait, and let that monitor resume the task.
Repeat with workspace finalization interrupted and with a free-text
question. Inspect the originating conversation and the persisted output.
Related merged work: #16806 and #16975. The open monitor and recovery
changes found during duplicate search address different status and
liveness policies.
## What Changed
- Keep committed monitor summaries visible through the shared board and
chat response resolver. Preserve interaction ownership and comment
reuse.
- Recover a saved monitor explanation after finalization, with no
repeated provider result.
- Prove monitor publication origin from the admitted wake and matching
scheduling receipt. Match company, task, agent, requester, and schedule;
reject ambiguous sources.
- Include monitor continuations in the existing publication scan and use
the canonical task binding. Keep current transport authorization.
- Suppress completion fallback for yielded results. Explain missing
final output without claiming completion.
- Include question summaries, prompts, and help text in modal-backed
cards. Keep answered text private.
- Update execution semantics, capability maps, and the bounded
reliability plan.
## Verification
- Original source fails four composed PostgreSQL regressions: monitor
origin, yielded completion, question body, and saved-summary recovery.
The shared response resolver also fails before the repair.
- Repaired focused cohort: 148 tests pass across publication, question
privacy, scheduler, and native monitor suites. These use real disposable
PostgreSQL; they do not qualify live Slack.
- Full workspace typecheck and production build pass locally. Map checks
and whitespace checks pass.
- All CI gates pass at
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bbcf5dfe98 |
fix(heartbeat): renew legacy controller leases on a private pool (#17032)
## Thinking Path > - Paperclip is the open source app people use to manage AI agents for work > - A legacy (non-native) agent run keeps a controller lease on its `heartbeat_runs` row. The server renews the lease every 10 seconds. If no renewal succeeds in 60 seconds, the watchdog stops the run with `renewal_deadline`. > - #16359 added timings to lease-loss reports. The first staging event with these timings shows `deadlineLateMs=0`, `renewalPendingMs=50000`, and 108 renewals in about 22.5 minutes, where about 135 are expected. Thus the event loop was not blocked. One renewal UPDATE was in flight for 50 seconds, and renewals were slow for a long time before the loss. > - The agent had exited with code 0. The run was in post-execution `sync_back`. Other runs on the same host completed. No code path held a lock on the run row across slow work. A later `instruction_save` UPDATE on the same row completed while the earlier renewal was still pending, so a row-lock wait does not explain the stall. > - postgres.js 3.4.9 sends a new query to a busy connection when no connection is idle (`handler` → `go(busy.shift(), query)` in `src/index.js`). The query waits behind the statement that is in flight on that connection. The renewal had no timeout, and the `pending` flag stopped all later renewals. Thus one slow unrelated statement on the shared pool can stop a healthy run. > - This pull request moves lease renewal to a small private pool, bounds each attempt with a statement timeout, and retries a timed-out attempt until the existing lease deadline. > - The benefit is that slow application queries on the shared pool can no longer cancel a healthy legacy run. ## Linked Issues or Issue Description Refs #16359 (lease-loss timings that identified this cause) Refs #16358 (pre-dispatch lease loss becomes retryable; different path) Refs #16917 (open: keeps a clean adapter result after a lease lapsed; it does not prevent the loss) Refs #13389 (open: host sleep / late timers; different cause) **What happened?** A staging legacy `claude_local` run was cancelled with `Legacy controller lease lost (renewal_deadline)` after the agent exited with code 0. The timings show that the deadline timer ran on time, and one renewal UPDATE was pending for 50 seconds. **Expected behavior** A live controller keeps its lease. Slow unrelated database work does not cancel the run. **Steps to reproduce** 1. Create a database client with one pooled connection. 2. Start `select pg_sleep(5)` on that client. 3. Call `watchLegacyControllerLease(...).assertOwned()` with the same client. 4. Before this change, the renewal waits about 5 seconds behind `pg_sleep`. With a long enough slow statement, the lease deadline stops the run. ## What Changed - `packages/db`: Add `livenessDb(db)`. It gives each `createDb` client a private pool of at most 2 connections (`application_name=paperclip-controller-lease`). The pool is created on first use. Test doubles and transactions get the original client back. - `packages/db`: Add `closeLivenessDb(db, timeoutSeconds)`. The server calls it in `closeDatabaseClients`, so shutdown and failed startup end the private pool too. - `legacy-controller-lease.ts`: The watchdog renews in a transaction on the private pool. Each attempt sets a transaction-local `statement_timeout` of 10 seconds. A timed-out attempt (`57014`) is retried. After a successful retry, the local deadline is measured from that attempt's start, because that attempt's UPDATE wrote the fresh 60 second lease. The existing 60 second deadline, the abort race, and the `renewal_rejected` / `renewal_error` attribution do not change. `renewLegacyControllerLease` itself does not change, so the runtime-selection caller inside its own transaction is not affected. - Tests: a saturated shared pool no longer delays renewal; a renewal that times out on a locked run row retries and keeps the lease; the private pool is cached per client, has its own `application_name`, and closes; after a 45 second timed-out attempt and a successful retry, the next deadline is a full 60 seconds after the retry. The existing test doubles now model the transaction. - `docs/deploy/database.md`: Count the up to 2 extra connections per server process when you size `max_connections`. ## Verification - `cd server && npx vitest run src/services/legacy-controller-lease.test.ts`: 20 passed, on embedded Postgres. - Red/green: with the old `legacy-controller-lease.ts` and the new tests, the saturated-pool test fails with `expected 5018 to be less than 2000`. With the fix, it passes. - Red/green for the retry deadline: with the deadline measured from the first attempt, the retry-deadline test fails (`expected true to be false`) because the run is aborted 15 seconds after the retry. With the fix, it passes. - Mutation check: when the timeout retry is removed, the locked-row test fails with `canceling statement due to statement timeout`. - `npx vitest run src/__tests__/heartbeat-process-recovery.test.ts -t "lease|dispatch|controller|interaction"`: 43 passed. - `npx vitest run src/services/heartbeat/run-completion.test.ts src/__tests__/heartbeat-orphaned-active-lease-sweep.test.ts`: 53 passed. - `npx vitest run src/__tests__/server-startup-feedback-export.test.ts`: passed. - `cd packages/db && npx vitest run src/work-signals.test.ts src/client-options.test.ts src/client-teardown-registry.test.ts`: 24 passed. `npx tsc --noEmit` for `packages/db` passed. - Not run locally: the full server `tsc` and the full server suite. The sandbox has a 4 GB memory limit, and `tsc` was killed (exit 137). CI is the gate for the server typecheck, the full tests, and the build. ## Risks - Each server process can open up to 2 more Postgres connections. Deployments that are at their `max_connections` limit must allow for them. The docs now say this. - A renewal attempt is now 4 statements (BEGIN, `set_config`, UPDATE, COMMIT) instead of 1. Each statement is a short primary-key operation on a dedicated connection. - If many runs wait on locked run rows at the same time, renewals for other runs can queue on the 2 private connections. The 10 second statement timeout limits each wait, which is less than the 60 second lease. - Behavior for a real lease loss does not change. A rejected renewal and a non-timeout error still stop the run at once, and the 60 second deadline still applies. ## Model Used - Claude Opus 5.5 (`claude-opus-5-5`), Anthropic, used through Claude Code in agent mode with tool use (shell, file edit, and test execution). A read-only subagent helped with code search. ## Checklist - [x] I have included a thinking path that traces from project context to this change - [x] I have specified the model used (with version and capability details) - [x] I have checked ROADMAP.md and confirmed this PR does not duplicate planned core work - [x] I have searched GitHub for duplicate or related PRs and linked them above - [x] I have either (a) linked existing issues with `Fixes: #` / `Closes #` / `Refs #` OR (b) described the issue in-PR following the relevant issue template - [x] I have not referenced internal/instance-local Paperclip issues or links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip` URLs) - [x] My branch name describes the change (e.g. `docs/...`, `fix/...`) and contains no internal Paperclip ticket id or instance-derived details - [x] I have run tests locally and they pass - [x] I have added or updated tests where applicable - [x] I have updated relevant documentation to reflect my changes - [x] I have considered and documented any risks above - [ ] All Paperclip CI gates are green - [ ] Greptile is 5/5 with no open P2s, recommendations, or follow-ups - [x] I will address all Greptile and reviewer comments before requesting merge 🤖 Generated with [Claude Code](https://claude.com/claude-code) --------- Co-authored-by: devinfoley <139239+devinfoley@users.noreply.github.com> Co-authored-by: Claude Opus 5.5 <noreply@anthropic.com> |
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e5351b240a |
Verify native Runner setup through plugin tasks (#17029)
## Thinking Path > - Paperclip manages work for AI agents. > - An environment plugin can own a Runner task. > - The merged launch-preparation contract lets the execution owner build the provider configuration. > - Core still needs a task process owner and a setup test that uses that configuration. > - This PR connects the task API to the Runner process-owner contract. > - Operators can test a plugin environment before Core sends it task work. ## Linked Issues or Issue Description **Subsystem affected** Runner, plugin SDK, and agent environment tests. **Problem or motivation** A task-only environment cannot use the shell-based setup path. Core must verify the Runner hello exchange and process cleanup through dedicated task operations. **Proposed solution** Add a lease-bound task driver and use it for a bounded setup probe. Keep heartbeat admission and task execution in #16978. This PR follows the merged launch-preparation contract in #16997. **Alternatives considered** A provider declaration alone cannot prove that Runner and the provider connect. A shell bridge would give the plugin an unnecessary command interface. ## What Changed - Pass structured Runner launch data to process owners. Support an external connection and explicit detach. - Add typed launch authentication checks and checkpoint operations. Check lease, run, project, and retained-task authority. - Connect launch preparation, PRP, termination proof, and credential handoff to the task driver. Reject local environment overrides during installed-account setup. Pass saved-account identity and credential home directly from Core. - Run a short-lived setup probe through the existing agent environment test API. Require a verified provider hello and cleanup. Keep saved Copilot account checks metadata-only through a dedicated task operation. - Update the Copilot source identity because the shared transport source changed. Keep provider behavior and the earlier identity fixture. ## Verification - CI passes on `f987adec7`: 55 successful checks and 5 expected skips. Standard Greptile and Apex are both 5/5 with no open findings. The branch merges cleanly with current master. - Repository typecheck and build pass after the rebase onto the workspace-provider contract. Server typecheck and build also pass after the final setup fix. - The 110 focused lease, SDK, setup, Copilot, and route cases pass after the rebase. All 14 setup cases pass after the final change. These include a real local Runner with a test provider. The saved-agent model-discovery case also passes. - Apex found that Core's relative workspace marker failed the driver path check, and non-Codex sessions omitted the observed model. Both failures were reproduced and fixed. The probe leaves physical workspace selection to plugin preparation. The transport reads each provider's observed model and exposes it to the driver. All 14 setup cases, 6 transport peer cases, and both existing real Runner/OpenCode cases pass. Runner build and server typecheck pass. - The coverage audit removed two redundant cases, repeated fixture code, and two extra real Runner launches. It kept authorization, credential selection, cancellation, lost replies, termination proof, checkpoint identity, and provider setup checks. - The Copilot source-identity check passes. The added-line secret and PII scan passes. The unmerged v52 attestation was regenerated after the shared transport fix. - CI on `13faeff02` caught one stale Copilot digest assertion after attestation regeneration. The literal now matches the candidate attestation, and all 49 installation cases pass. That CI lane otherwise passed 1,818 cases. - An earlier CI run hit an unchanged UI toast timing test. The separate fix is tracked in #16952. Current CI passes that shard. CI also caught a stale model-discovery assertion in this change; the assertion is fixed. - The local full-suite run was stopped when master changed. The final CI run supplies exact-head full-suite validation. No live Cloud or provider test was run. ## Risks - Native hello tests require a saved Core account or the installed account. Local environment overrides are unsupported for installed-account probes and fail before the provider runs. - A native task provider must declare launch preparation and authentication-check version 1. It must keep the checked configuration fixed through submission. Core rejects providers that cannot make this guarantee. - A lost task reply does not prove process termination. Core retains grants until the provider proves termination and Core saves required state. - This PR does not enable native heartbeat dispatch through plugin environments. Cloud deployment and live provider validation remain separate. ## Model Used OpenAI Codex, GPT-6. The exact model ID and context window are not exposed in this session. Tool use includes code editing, local tests, and the GitHub CLI. ## Checklist - [x] I have included a thinking path that traces from project context to this change - [x] I have specified the model used (with version and capability details) - [x] I have checked ROADMAP.md and confirmed this PR does not duplicate planned core work - [x] I have searched GitHub for duplicate or related PRs and linked them above - [x] I have described the issue in-PR following the relevant issue template - [x] I have not referenced internal/instance-local Paperclip issues or links - [x] My branch name describes the change and contains no internal issue details - [x] I have run focused tests locally and they pass - [x] I have added or updated tests where applicable - [x] I have updated relevant documentation to reflect my changes - [x] I have considered and documented any risks above - [x] All Paperclip CI gates are green - [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups - [x] I will address all Greptile and reviewer comments before requesting merge --------- Co-authored-by: Paperclip <noreply@paperclip.ing> |
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79b2bf78dd |
Create agent records when onboarding names are submitted (#17005)
## Thinking Path > - Paperclip is the open source app people use to manage AI agents for work. > - Core onboarding selects an agent and connects its provider account. > - The current flow creates the agent record after authentication. > - Setup needs a stable agent identity as soon as the user submits its name. > - This PR saves a paused setup record on name submission and finishes the hire on that same record. > - The existing sandbox authentication and approval paths continue to apply. ## Linked Issues or Issue Description **Subsystem affected** Core agent lifecycle, shared validators, and onboarding UI. **Current behavior** Onboarding creates the database record at the final hire step. Earlier authentication and saved setup have no agent record. **Proposed behavior** Create a paused agent with a setup hold when the user submits its name. Do this before adapter selection or authentication. Update that same record after adapter selection. Reuse its ID on retries and saved setup. Finish that record through the existing hire path. **Reason and benefit** Give setup a stable identity without coupling this refactor to computer provisioning or a new execution backend. **Breaking changes** Incomplete setup now leaves an inactive agent record. Existing clients can still create and hire agents without the new optional fields. The sandbox authentication flow and API key support remain in place. **Additional context** Requested Core-only refactor. Related work: #15422 changes runner defaults. This PR preserves those choices. No duplicate early-record refactor was found in the issue and PR search. ## What Changed - Save the agent when the user submits its name in both onboarding entry points. Use a provisional adapter until the user chooses one. Reopen name-only drafts at adapter selection. - Add retry-safe setup creation and same-record hire completion. Keep approval checks at final hire. - Save and restore setup configuration in both onboarding entry points. Show Finish setup for paused setup agents. - Restrict setup changes to authorized board users. Block generic resume until setup finishes. - Add lifecycle, authorization, connection, and UI coverage. Update the specification and feature maps. ## Verification - Latest focused server run: 126 lifecycle and AI-connection tests passed after the Apex fixes. An earlier broader run passed 301 lifecycle, instruction, adapter-validation, and AI-connection tests. Earlier authentication, retry, cross-company, and direct-create regressions also passed. - Name-save verification: 336 tests across the wizard, naming dialog, New agent, action-button, and wizard-step suites passed. Coverage includes retry identity, repeated submission, closing during a save, saved-model restoration, and a disabled process adapter. - Shared, server, and UI TypeScript checks passed. The latest UI package check and direct server TypeScript check passed. The server package preparation command could not finish locally because Cargo is unavailable; full build preparation runs in CI. Map checks, token gates, and `git diff --check` passed; each pushed diff was scanned for credentials and PII. - All six onboarding browser tests passed together with installed Chrome against a fresh throwaway instance after the Apex fixes. They include numbered duplicate names, first-time Copilot without a connected account, and Grok’s saved model. They verify early persistence in both entry points, closing and reopening a name-only draft, same-record adapter selection, sandbox sign-in, login reload, and failed-connection gating. Provider responses are simulated; Core persistence is real. - Regression coverage includes incomplete Copilot creation versus final validation, Kimi settings through redacted responses, stale local drafts, company switches during creation, saved environments, and provider changes with personal/shared old bindings. - Apex found five name-only setup gaps: numbered names, early Copilot account validation, the Grok model default, same-name draft ownership, and provisional runner restoration. The fixes preserve server names, defer implicit account binding until hire, set Grok’s model, avoid name-based reuse of unfinished records, and restore Auto for pending adapter choices. UI, database, and browser regressions cover these cases. - Standard Greptile found a Grok provider mismatch in the new adapter save. The save now uses ACPX with the Grok profile. Both the 129-test dialog/setup run and a real-API browser regression passed after the fix. The first browser attempt stopped on an ambiguous empty-roster button selector; it now scopes the click to the toolbar. - Moving the save point exposed a saved-model reset and timing assumptions in the same-name and portal fixtures. The source choice now preserves the restored model, and tests cover same-name recovery without a second hire. - Initial CI exposed direct-create compatibility, concurrent setup effects, fixture assumptions, and a missing-fields assumption in the provider-validation guard. These were fixed and verified locally. Review findings were addressed with authorization, recovery, credential-persistence, and restored-configuration regressions. - The final desktop capture passed after host resource cleanup. A repeat first failed before Core started because macOS had exhausted shared-memory IDs. Standalone PostgreSQL initialization reproduced the same error. Releasing only unattached control segments from this task’s stopped test databases allowed the unchanged revision to pass. No Core or system setting changed. - Local database tests required port access outside the sandbox. Missing declared development dependencies were supplied outside the branch. No live provider sign-in was tested locally. - [Full monorepo CI](https://github.com/paperclipai/paperclip/actions/runs/39522434236) is green on `82b82fec189a172a885d4dd565ae2f4a18c73efc`. Standard Greptile scored 5/5 with zero new comments (check `118969424903`). The subsequent Apex review also scored 5/5 with zero new comments (check `118972866331`) on that same commit. All review threads are resolved. - The separate Superagent Security scan returned neutral/inconclusive because its pinned merge-base checkout failed or timed out. GitHub returned 404 for check and suite rerun requests. This is not a successful security scan; the CI workflow and other security checks passed. ## Risks - Users can leave inactive setup records behind, including after name submission alone. These records cannot run until hire completes. - Setup completion touches hiring and approval boundaries. Tests cover retries, company isolation, creator permissions, and approval snapshots. - An uncertain credential-save result retains its new secret reference for retry. A confirmed client rejection removes only credentials staged by that attempt. - No schema migration or VM provisioning change is required. Agent-computer integration is out of scope. ## Model Used OpenAI Codex, based on GPT-6, with repository search, code editing, and tool execution. The exact deployment ID and context window are not exposed in this session. ## Checklist - [x] I have included a thinking path that traces from project context to this change - [x] I have specified the model used (with version and capability details) - [x] I have checked ROADMAP.md and confirmed this PR does not duplicate planned core work - [x] I have searched GitHub for duplicate or related PRs and linked them above - [x] I have either (a) linked existing issues with `Fixes: #` / `Closes #` / `Refs #` OR (b) described the issue in-PR following the relevant issue template - [x] I have not referenced internal/instance-local Paperclip issues or links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip` URLs) - [x] My branch name describes the change (e.g. `docs/...`, `fix/...`) and contains no internal Paperclip ticket id or instance-derived details - [x] I have run tests locally and they pass - [x] I have added or updated tests where applicable - [x] I have updated relevant documentation to reflect my changes - [x] I have considered and documented any risks above - [x] All Paperclip CI gates are green - [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups - [x] Apex Greptile is also 5/5 on the same commit as standard review and green CI - [x] I will address all Greptile and reviewer comments before requesting merge --------- Co-authored-by: Paperclip <noreply@paperclip.ing> |
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d33b40a5c3 |
fix: recover saved work and provide reliable task Retry (#16965)
## Thinking Path > - Paperclip is the open source app people use to manage AI agents for work. > - The control plane must retain work when an execution or workspace export fails. > - Retained-workspace holds can leave saved input waiting with no usable Retry action. > - Users cannot verify process ownership or repair provider allocations. > - This pull request gives system recovery a durable budget and gives each deliberate Retry a durable intent. > - Safe recovery can preserve files, settle an accepted result, or prepare an independent workspace. > - One task state keeps infrastructure diagnostics out of the ordinary conversation while preserving real permission and approval gates. ## Linked Issues or Issue Description **What happened?** A task with a retained workspace can show recovery, failed-run and saved-message warnings at the same time. Historical runs without native workspace descriptors cannot use the native restore path. Old recovery metadata can prevent a new attempt even when an independent workspace would be safe. **Expected behavior** Paperclip owns bounded infrastructure retries and file preservation. A user can request another attempt with ordinary Retry. Thinking appears immediately. The service preserves completed effects and current user controls. It does not claim that starting fresh recovered the old files. **Steps to reproduce** 1. Retain a failed run and its workspace after export or process-stop failure. 2. Save a follow-up while the recovery hold is active. 3. Open the task and try to continue without infrastructure credentials or operator certification. Refs #16906, #16835, #16883. This extends their recovery and receipt contracts. Related work: #16962 and #16963. ## What Changed - Add task-level Retry with company-scoped authorization, all-status idempotency and durable admission before physical work. Keep exact-run Retry compatible. - Add typed recovery phases, finite persisted backoff, historical adoption and durable local failure diagnostics. - Preserve native workspaces or verified historical snapshots. Admit an independent fresh workspace only after execution containment. Keep old-source preservation and cleanup obligations separate. - Carry completed publication and API receipts forward. Fence uncertain mutation retries across replacement runs. Preserve connected-chat identity and authorization. - Re-enter normal dispatch for saved input. Reuse accepted results through the existing finalizer. - Use one task interruption projection across the thread, composer and task list. Show optimistic Thinking, ordinary Retry and genuine user gates. - Add PostgreSQL, filesystem, API, browser-fixture and controlled provider coverage. Document the behavior and update the feature/access maps. ## Verification - All GitHub Actions CI jobs pass on `6d8c6d27d50586d8548b31d03b47f6d73a0ee11d`: typecheck, all server/chat/workspace and serialized suites, Runner checks, eight browser shards, canary and build. The required merge gate passes. - Greptile reviewed the final commit at 5/5, with no actionable findings or unresolved review threads. Its two earlier P1 findings are fixed. - Full recursive typecheck and build pass locally on the final commit. All 16 task Retry cases pass against isolated real PostgreSQL. The unrelated-success case and both stale Retry cases fail on the previous code and pass after the fix. - The corrected gateway fixture passes its uncertain-mutation and independent-read case. Four real HTTP API cases pass for definite 403/422 rejection, completed-effect reuse, and uncertain-effect fences across deliberate and automatic retries. These focused gateway/API checks used a temporary database lifecycle harness on an existing healthy local PostgreSQL process. The standard repository helper is unchanged. - Earlier qualification covers 291 task UI cases, saved-file copyback and ancestry, current Agent Chat ownership races, nine chat Retry API browser cases, and six assembled browser recovery fixtures. A real API/PostgreSQL/native-runner journey showed Thinking in 25 ms despite a delayed response, admitted one successor in a separate workspace, retained original files, and survived reload. - The controlled Daytona test interrupts export, joins the controller, restarts it in a separate process, and verifies one agent start, one external sentinel operation, retained file contents and no premature cleanup. It does not establish abrupt-kill or live LLM/GitHub acceptance. - The full local `pnpm test:run` was attempted and was not green: an OAuth row-lock timing assertion failed, and a later suite exhausted macOS PostgreSQL semaphores. The ten OAuth timing cases passed on rerun against a separate database. Later embedded database initialization failures remain recorded; the final CI matrix passes. - Security scanning passed on production-code commit `63953edf069b111c6becc3144dffa6deb52f68b5`. Its only successor changes one test-fixture identity line. The final scan is neutral/inconclusive because its pinned merge-base checkout failed or timed out. Both rerun API requests returned 404, so no fresh successful scan is claimed. Socket and Snyk checks pass on the final head. - The optional Paperclip Review remains queued behind an earlier run in workspace finalization. Its prior completed assessment was incomplete because a comparison tool was blocked by the platform filter. It is not counted as a completed code review. GitHub does not require this check for merge. - Hosted acceptance remains pending deployment. Local and CI results do not establish recovery of a hosted task or its retained files. ## Risks - Recovery changes span admission, physical ownership and dispatch. Incorrect evidence could permit overlapping work. Existing physical locks and authoritative stop requirements remain in place. - The migration adds concurrent indexes. It requires the existing top-level migration runner and retries incomplete index creation safely. - A fresh attempt can complete while old-source preservation remains unresolved. The service retains that obligation and does not report those files as recovered. - Unknown tool mutations remain blocked until their authoritative receipt owner resolves them. Generic upstream tools have no universal result-query protocol. - Recovery and diagnostics stay inside the stack. No Cloud incident endpoint, notification worker or new outbound reporting channel is included. ## Model Used OpenAI Codex, GPT-6 family. The runtime does not expose a more specific model version or context-window size. The model used reasoning, shell execution, source editing and browser tools. No model subagents were used for this implementation. ## Checklist - [x] I have included a thinking path that traces from project context to this change - [x] I have specified the model used (with version and capability details) - [x] I have checked ROADMAP.md and confirmed this PR does not duplicate planned core work - [x] I have searched GitHub for duplicate or related PRs and linked them above - [x] I have either (a) linked existing issues with `Fixes: #` / `Closes #` / `Refs #` OR (b) described the issue in-PR following the relevant issue template - [x] I have not referenced internal/instance-local Paperclip issues or links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip` URLs) - [x] My branch name describes the change (e.g. `docs/...`, `fix/...`) and contains no internal Paperclip ticket id or instance-derived details - [x] I have run tests locally and they pass (focused suites; the full local run limitation is documented above) - [x] I have added or updated tests where applicable - [x] I have updated relevant documentation to reflect my changes - [x] I have considered and documented any risks above - [x] All Paperclip CI gates are green - [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups - [x] I will address all Greptile and reviewer comments before requesting merge --------- Co-authored-by: Paperclip <noreply@paperclip.ing> |
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6c9b87d092 |
trace(server): expose repository admission waits (#17040)
## Thinking Path > - Paperclip manages work performed by AI agents. > - The controller prepares a task workspace before it starts a provider turn. > - Repository admission also runs when a checkout already exists. > - One observed reuse took 16.877 seconds. Its child spans explained only 3.556 seconds. > - The missing detail covered repeated authority checks, catalog work, and publication waits. > - This change exposes those operations under the existing execution attempt. > - Operators can expand the slow phase before choosing a performance fix. ## Linked Issues or Issue Description Refs #16963, #16330, and #16515. The provider-routing work in #17019 has a different scope. **What existing behavior does this improve?** Repository-admission traces for new and reused checkouts. **Subsystem affected** server/ orchestration and operator-configured OpenTelemetry tracing. **Current behavior** The admission span can contain a long interval without child spans. Existing project checks, HTTP requests, and checkout lookup do not explain current-task checks, database awaits, credential refresh, or publication locks. **Proposed behavior** Expose nested spans for current binding and task access, individual identity reads, catalog construction, credentials, grant transactions, filesystem validation, Git inspection, and directory-lock acquisition, work, and release. **Reason and benefit** The trace can distinguish repeated checks, remote calls, database awaits, and directory contention. A database-await span includes driver, network, pool, and server time. It is not isolated SQL execution time. **Breaking changes** None. No API, schema, permission, retry, lock, or repository behavior changes. ## What Changed - Add fixed admission phases beneath the existing execution attempt. Keep the existing project, checkout, and HTTP detail. - Trace current-task authorization stages only under workspace access. Unrelated decisions cannot consume that detail budget before admission. - Trace GitHub catalog reads, credentials, provider metadata, grant row locking and writes, transaction settlement, and webhook work. - Separate directory-lock acquisition, the protected operation, and release without changing the adapter lock contract. - Document the hierarchy and timing limits. Keep endpoint gating, span caps, and hashed run correlation. Add no span attributes or exception text. ## Verification - Nine new tests passed with real PostgreSQL, real Git, and SDK-exported spans. They cover directory contention, grant-row blocking, all three binding checks, reuse without cloning, dirty files, private-task denial, receipt repair, conflict retry, endpoint-off behavior, and parent IDs. - Twenty earlier unrelated authorization decisions do not exhaust the admission detail budget. - Existing authorization and trust suites: 105 tests passed. Existing timing/context suites: 26 tests passed. Existing repository-access tests: 6 tests passed. - `pnpm -r typecheck` and `pnpm build` passed on commit `5a986d8c86644dfb7ee39b3b832e2d7c86532598`. - `pnpm test:run` could not complete locally. The temporary five-connection cluster returned `sorry, too many clients already` in chat fixtures, and the run was interrupted. It is not a pass. The complete standard CI workflow passed on the same commit, including all 12 server shards and all three chat shards. - Final current-head checks: 54 success, two neutral, two skipped, zero pending or failing. The [CI aggregate](https://github.com/paperclipai/paperclip/actions/runs/39522187940/job/118971261973) passed. [Greptile](https://github.com/paperclipai/paperclip/pull/17040#issuecomment-6305066520) and [Paperclip Review](https://github.com/paperclipai/paperclip/pull/17040#issuecomment-6305017182) both assessed this exact commit at 5/5 with no actionable findings or unresolved threads. - `node scripts/check-module-boundaries.mjs` and `git diff --check` passed. - This macOS host exhausted its SysV semaphore quota. Database tests used a temporary command-scoped initdb preload with five connections, fewer workers, and a larger lock table. No repository test infrastructure or shared host settings changed. Initial skipped tests, focused-fixture failures, and clock-order assertion failures were corrected and rerun; they are not counted as passes. The complete local run remained connection-limited and was interrupted. - Local SDK export proves parentage and privacy. Hosted Honeycomb ingestion remains unverified until deployment. No deployment occurred. ## Risks Span recording requires an operator-configured OTLP endpoint. Each fixed detail name remains capped at 16 occurrences per attempt. Later operations still execute under their enclosing phase. Timing wrappers preserve the existing operations and their errors. No migration is required. The change does not itself reduce admission latency. ## Model Used OpenAI Codex, based on GPT-6, with tool use, code execution, and delegated agents. The exact hosted model identifier and context-window size are not exposed in this session. ## Checklist - [x] I have included a thinking path that traces from project context to this change - [x] I have specified the model used (with version and capability details) - [x] I have checked ROADMAP.md and confirmed this PR does not duplicate planned core work - [x] I have searched GitHub for duplicate or related PRs and linked them above - [x] I have either (a) linked existing issues with `Fixes: #` / `Closes #` / `Refs #` OR (b) described the issue in-PR following the relevant issue template - [x] I have not referenced internal/instance-local Paperclip issues or links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip` URLs) - [x] My branch name describes the change (e.g. `docs/...`, `fix/...`) and contains no internal Paperclip ticket id or instance-derived details - [x] I have run tests locally and they pass - [x] I have added or updated tests where applicable - [x] I have updated relevant documentation to reflect my changes - [x] I have considered and documented any risks above - [x] All Paperclip CI gates are green - [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups - [x] I will address all Greptile and reviewer comments before requesting merge Co-authored-by: Paperclip <noreply@paperclip.ing> |
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8b4ab65b1c |
Add plugin-owned project storage and task workspaces (#17001)
## Thinking Path > - Paperclip is the open source app people use to manage AI agents for work. > - Tasks can use isolated repository workspaces. > - Core currently prepares those repositories on its own filesystem. > - A storage provider may only expose repositories inside remote agent computers. > - Project storage and task workspace preparation must have one provider owner. > - This pull request adds that contract and keeps execution as a separate plugin interface. > - Core keeps authorization, durable task bindings, and lifecycle fences. ## Linked Issues or Issue Description **Subsystem affected** Plugin SDK, project workspace policy, heartbeat preparation, execution leases, and workspace lifecycle. **Problem or motivation** Core cannot prepare a task workspace when its repository storage is unavailable on the Core host. An execution lease must not be required just to prepare persistent storage. **Proposed solution** Let one plugin provide project resource lifecycle and workspace prepare, inspect, restore, and remove behavior. Core reserves a task workspace before it calls the plugin. The plugin returns an opaque durable reference. The matching execution plugin receives that reference on its task RPC. **Alternatives considered** Preparing repositories on Core would require a provider mount on Core. Preparing them only during task launch would tie persistent workspace lifecycle to execution leases and agent availability. **Roadmap alignment** This extends the remote provider model in ROADMAP.md. Related execution work is in #16978. This PR does not replace that task bridge. Native execution of managed storage requires the bridge; this change fails closed when it is absent. ## What Changed - Add one storage provider declaration with supported modes/strategies, a capability, a validated RPC contract, and a test harness. - Persist provider ownership, repository revision, and execution-workspace identity before external effects. Reconcile retries with a stable operation ID. - Prepare provider storage before environment acquisition. Keep Core filesystem preparation out of this path. - Pin the durable reference to the matching execution plugin and validate the lease binding before task dispatch. - Route inspection, reopen, and removal through the existing lifecycle process. Keep local data when remote recovery is uncertain. - Keep the application database pool free during lifecycle locks. Preserve pending workspace selections, validate source edits before retirement, and retry unfinished closed storage cleanup. - Protect provider metadata and live repository sources from caller edits. Storage edits retire only closed records with confirmed removal; retired records cannot reopen. ## Verification - Current head `8214b3ca5`: all 25 provider lifecycle tests pass with `maxConnections=1`. They cover preparation, inspection, reopening, removal, a paused provider with responsive ordinary SQL and a competing source edit, pending selection preservation, rejected source edits, cleanup retry scheduling, and providers that cache operation results, and committed cleanup notifications for storage intent and recovered state. - Final frozen-tree lifecycle run on `8214b3ca5`: all 318 tests passed in 10 files, covering workspace services, reopen, compaction, task binding, project sources, heartbeat preparation, display caching, and source locks. - Direct server `tsc --noEmit` passes. The SDK build and all 128 SDK tests passed during initial verification; later SDK changes are documentation only. - Full CI on the previous head `ec5c7209a` passed all 55 applicable checks; 2 conditional checks skipped. Standard Greptile reviewed current head `342e6d9c3` at 5/5 with no unresolved threads. All 55 applicable CI checks passed on `342e6d9c3`; 2 conditional checks skipped. The Slack browser and CLI startup jobs passed on their single unchanged-head rerun. Its Apex review returned 4/5 with one pending-restoration issue. Commit `1b58943b1` reconciles that durable intent before cleanup, advances the generation without reopening the Core row, and blocks direct removal or retirement while intent remains unresolved. Standard Greptile reviewed `1b58943b1` at 5/5 with no new findings. All 54 applicable CI checks passed on `1b58943b1`; 3 conditional checks skipped. The chat job passed on its single unchanged-head rerun. Apex then returned 4/5 for a missing cleanup wake after recovery. Commit `8214b3ca5` atomically registers cleanup intent before storage intent and recovery-result writes. Its provider test observes real committed notification hints and the visible advanced generation. Standard Greptile reviewed `8214b3ca5` at 5/5 with no new findings. All 55 applicable current-head CI checks passed on the first run; 2 conditional checks skipped. Final Apex verification completed at 5/5 on this exact head: 38 files reviewed, no new comments, and no unresolved threads. The PR is ready for review and mergeable. - The first Apex review found five issues after a standard 5/5: application-pool starvation, stale pending selections, retirement during rejected source edits, lost cleanup retries, and reused inspection identities. Commits `6d72e7fd4` and `342e6d9c3` fix each with regression coverage. Archive lock waits use dedicated connections, and source edits fail promptly if the lifecycle is busy. Retirement compares normalized values. The normalized-source regression initially failed with the raw-value comparison; after moving the check after normalization, a clean provider-suite rerun passed all 24 tests at that stage. Those threads are resolved; the earlier Apex 0/5 is not a passing acceptance result. - Earlier local integration attempts could not bind localhost inside the sandbox. The same suites passed with permission to start local PostgreSQL. - The earlier broad local `pnpm test:run` overlapped edits and reported stale-revision and checkout-path/Git-fixture failures. It was not a final-tree result. Full CI subsequently passed; the original local failure remains part of verification history. - Local repository-wide typecheck/build cannot complete because `cargo` is unavailable. Direct server TypeScript checks and affected tests pass; full Rust and build validation comes from CI. - An earlier browser run on `ff918c5a8` failed in the unchanged case-filter journey: expected “Done,” received “All statuses,” with an announcement handler recorded during the assertion. The cause is not confirmed. [The failed job](https://github.com/paperclipai/paperclip/actions/runs/39500611857/job/118896954508) remains verification history. The unchanged shard passed in the next full CI run on `ec5c7209a`; no UI or fixture change was made. - Current-head browser shard 2 failed waiting five seconds for the mocked Slack setup Success heading. This PR changes neither that UI nor its fixture. [The failed job](https://github.com/paperclipai/paperclip/actions/runs/39506070513/job/118916021232) remains verification evidence. The cause is not confirmed; the single unchanged-shard rerun passed; no UI or fixture change was made, and the original cause remains unconfirmed. - The workspace test shard passed its 3,978 general tests, then its CLI company-import/export fixture timed out after 30 seconds waiting for startup health before creating any company or workspace. [The failed job](https://github.com/paperclipai/paperclip/actions/runs/39506070513/job/118916021855) remains verification history. The child reached external-PostgreSQL startup without exiting or reporting an exception. Its cause is not confirmed; the single unchanged-job rerun passed, including the CLI fixture. No startup or fixture change was made, and the original cause remains unconfirmed. - The new cached-removal regression initially failed because its fake worker advertised availability for unrelated fixture plugins, so another workspace changed its fake checkout state. Worker availability now matches the fixture plugin; the complete 25-test provider suite passes. - On `1b58943b1`, the chat shard timed out polling for one conversation after an authorized GitHub description edit. [The failed job](https://github.com/paperclipai/paperclip/actions/runs/39510521657/job/118930193418) remains evidence. The exact case passes locally against PostgreSQL (1 passed, 1,380 unrelated cases skipped), and this PR changes neither that test nor its handler. The original cause is unconfirmed; the single unchanged-job CI rerun passed without a code or fixture change. The original cause remains unconfirmed. - The diff was checked for credentials, private references, and generated artifacts. ## Risks This is an additive provider contract with no database migration. Existing projects keep their local behavior unless their policy selects a storage plugin. A selected provider must be ready and enabled. Unknown or unsafe cleanup fails closed. Managed native execution depends on #16978. Core refuses a host Runner fallback. Providers must fence lifecycle generations, preserve ambiguous retries, and report remote recovery honestly. Provider-specific live storage and guest mount qualification remain separate from these Core contract tests. ## Model Used OpenAI Codex (GPT-6), with repository inspection, code execution, and tests. The exact model variant was not exposed. ## Checklist - [x] I have included a thinking path that traces from project context to this change - [x] I have specified the model used (with version and capability details) - [x] I have checked ROADMAP.md and confirmed this PR does not duplicate planned core work - [x] I have searched GitHub for duplicate or related PRs and linked them above - [x] I have either linked existing issues or described the issue in-PR following the relevant issue template - [x] I have not referenced internal/instance-local Paperclip issues or links - [x] My branch name describes the change and contains no internal ticket id - [x] I have run tests locally and they pass (affected suites; broad-run limits are documented above) - [x] I have added or updated tests where applicable - [x] I have updated relevant documentation to reflect my changes - [x] I have considered and documented any risks above - [x] All Paperclip CI gates are green - [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups - [x] I will address all Greptile and reviewer comments before requesting merge --------- Co-authored-by: Paperclip <noreply@paperclip.ing> |
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572bef4ba7 |
fix: omit re-downloadable Codex remote plugins from failover backups (#17026)
## Thinking Path
> - Paperclip is the open source app people use to manage AI agents for
work
> - Native Codex sessions in remote sandboxes copy the sandbox's Codex
home into a host-side failover backup after every turn
> - Ephemeral sandboxes restore that backup at the start of every turn,
so its size affects both disk use and turn latency
> - Most of each backup is remote plugin data that Codex itself treats
as a cache and re-downloads on startup
> - This pull request leaves that data out of Codex checkpoints, keeping
everything a resumed session needs
> - The benefit is backups roughly 80–90% smaller, less data moved per
turn, and much slower disk growth
## Linked Issues or Issue Description
Bug report described in-PR (bug report template). Related: #16866
(expires failover backups after their issues close).
**What happened?**
Failover backups grow quickly because each Codex checkpoint includes
`$CODEX_HOME` remote plugin data. On one instance, 204 backups held 22.1
GB:
- `codex-home/plugins/cache/openai-curated-remote`: 8.3 GB (about 29 MB
per backup);
- `codex-home/cache/remote_plugin_catalog`: 6.1 GB (one 38 MB catalog
file per backup);
- `codex-home/sessions` (the conversation history): 0.31 GB.
About 80 new backups (9.8 GB) were written per day. Ephemeral sandboxes
also copy all of this into a fresh sandbox before each turn.
**Expected behavior**
Checkpoints keep what a resumed session needs and omit data that Codex
re-downloads itself.
**Steps to reproduce**
1. Run a Codex agent with ChatGPT auth in a remote sandbox environment.
2. Inspect
`<instance>/runtime/paperclip-runner/durable-sessions/*/failover-backups/current/codex-home`.
3. Most bytes are under `plugins/cache/openai-curated-remote` and
`cache/remote_plugin_catalog`.
**Paperclip version or commit:** `master` at
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15176963b1 |
fix: stop idle skill-source polling (#17008)
## Thinking Path > - Paperclip manages agent work and the skills that agents use. > - Project repositories create durable import jobs, and installed sources can refresh automatically. > - The server queried these records every five seconds, even when no work existed. > - Idle tenant databases need to stop receiving those discovery queries. > - This change uses the existing transaction notifications and delivery coordinator. > - Saved refresh, retry, and lease deadlines determine when the worker runs next. > - Cloud does not yet wake these deadlines, so outstanding skill work retains the instance. ## Linked Issues or Issue Description **What existing behavior does this improve?** Skill-source background synchronization. This continues the idle-work migrations in #15625 and #17000. A search found no overlapping open polling-removal PR. **Current behavior** On master `b11010b0d4`, startup installs a five-second skill-source interval and also calls it from the external-object scheduler. Each sweep queries active companies, import capacity, pending imports, and automatic refreshes. **Proposed behavior** Run at startup, after a relevant transaction settles, or at a saved deadline. Stay SQL-quiet when no eligible work remains. Preserve import admission, authorization, atomic claims, retry backoff, and the existing five-minute upstream check. **Reason and benefit** Remove recurring database activity from inactive tenant instances without requiring new tables or a new scheduler. ## What Changed - Replace both recurring skill-sync calls with one delivery-coordinator registration. - Notify from attachment/detachment, source creation/settings/manual refresh/disconnection, project/company deletion, and company status changes, including budget resume. - Restore the earliest eligible `nextSyncAt` or lease-expiry deadline. Due backlogs and conflicts retry after five seconds; no idle recovery cadence remains. - Admit deferred imports again after a batch frees capacity. Preserve requests through drain, standby, restart, and commits during a sweep. - Add sleep-safety predicates for imports and eligible automatic sources until Cloud supports these deadlines. - Document the lifecycle and process-local writer contract. No schema or API changes. - Guard external test database URLs before migrations or cleanup: require a `_test` database name and reject database/options overrides. ## Verification - 147 targeted tests pass: 39 server-startup tests, 14 new real-PostgreSQL lifecycle tests, 20 shared coordinator/scheduler tests, 63 existing import/refresh/retry regression tests, and 11 test-database guard cases. - CI exposed a stale startup mock without the new `start` method. The fixture is updated and all 39 startup tests pass locally. - Tests exercise real enqueue/settings/company-reactivation producers, nested commit, rollback, saved retry/lease restart, manual refresh failure, capacity admission, concurrent commit, shutdown cancellation, and SQL quiet after startup or pause. - Sleep-safety tests reject sleep for future imports and automatic refreshes, and accept inactive retained state. - `pnpm -r typecheck` and `pnpm build` pass. - `pnpm test:run` was attempted and stopped after repeated embedded-PostgreSQL startup failures in unrelated suites. The two existing import/refresh suites initially skipped for the same host limitation; after adding explicit disposable-database options, all 63 regression tests passed against PostgreSQL 17. Full CI passed on `ddb3ee51369baa8c7153bae9fd88efb8b903f2bc`: 55 successful checks, one neutral review check, and two intentional skips. ## Risks - Notifications are process-local. Independent SQL writers and separate live replicas do not wake this worker; startup reconstructs persisted work. - Enabled automatic sources still contact GitHub every five minutes. Their upstream changes have no event ingress here. - Cloud scheduled wakes currently cover routines and issue monitors, not skill sync. This change retains instances with outstanding skill obligations. It does not claim measured host/database suspension or fleet savings. - No change to source authorization, installed content on failure, or existing claim semantics. ## Model Used OpenAI Codex, GPT-6 family, with reasoning, repository tools, and code execution. The host does not expose an exact model revision or context-window size to this session. ## Checklist - [x] I have included a thinking path that traces from project context to this change - [x] I have specified the model used (with version and capability details) - [x] I have checked ROADMAP.md and confirmed this PR does not duplicate planned core work - [x] I have searched GitHub for duplicate or related PRs and linked them above - [x] I have either (a) linked existing issues with `Fixes: #` / `Closes #` / `Refs #` OR (b) described the issue in-PR following the relevant issue template - [x] I have not referenced internal/instance-local Paperclip issues or links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip` URLs) - [x] My branch name describes the change (e.g. `docs/...`, `fix/...`) and contains no internal Paperclip ticket id or instance-derived details - [x] I have run tests locally and they pass - [x] I have added or updated tests where applicable - [x] I have updated relevant documentation to reflect my changes - [x] I have considered and documented any risks above - [x] All Paperclip CI gates are green - [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups - [x] I will address all Greptile and reviewer comments before requesting merge --------- Co-authored-by: Paperclip <noreply@paperclip.ing> |
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cb2d6e80d3 |
perf: stop polling idle Muse maintenance (#17000)
## Thinking Path > - Paperclip manages AI agents and their work. > - Muse connects an external worker to a Paperclip agent. > - Its maintenance loop scans the database every five seconds, even without bindings. > - These empty scans prevent an otherwise idle database from sleeping. > - The shared delivery coordinator can react to committed writes and saved deadlines. > - This change uses that coordinator and retains recovery for unfinished assignments. > - Idle Muse maintenance can now stop querying the database. ## Linked Issues or Issue Description **What existing behavior does this improve?** Muse qualification, OAuth authority, and terminal assignment maintenance. **Current behavior** A claimed instance runs two empty scans every five seconds even when Muse has no bindings. This produces about 34,560 unnecessary queries per day. Warm standby suppression from #16974 does not cover claimed instances. **Proposed behavior** Recover once at startup. Wake after relevant transactions settle. Schedule qualification expiry at its saved deadline. Retain five-second recovery only for failures and unfinished assignments. **Reason and benefit** Remove recurring database traffic from idle Muse maintenance while preserving authority checks and recovery. Reuse the database work signal foundation from #15625 without adding tables. ## What Changed - Register Muse maintenance with the shared delivery coordinator and its idle admission rules. - Signal pairing, OAuth attachment and revocation, qualification changes, and new assignments before transaction writes. The existing transaction layer waits for outer commit. - Restore qualification deadlines from persisted bindings. Retry failed sweeps and unfinished assignments. - Add PostgreSQL tests for idle quiet, nested commit, rollback, deadlines, standby, drain, and failure recovery. Verify signals from actual Muse producers. Preserve startup, newly committed work, and failed sweep retries across idle drain without SQL polling. - Document the remaining recovery cadence and sleep limitations. ## Verification - `pnpm -r typecheck`: passed before rebase. Server typechecking also passed after rebase and the drain fix. - `pnpm build`: passed before rebase. - Final change: 33 maintenance, delivery coordinator, and scheduler tests passed. Maintenance used a fresh disposable PostgreSQL 17 database. - Muse control-plane tests: 254 passed against the same disposable database. - `pnpm test:run`: attempted, then stopped after repeated embedded PostgreSQL startup failures from this host's semaphore limit. Native-session, Muse, and AI-connection suites could not create local clusters. The complete suite runs in CI. - `git diff --check`: passed. - Final commit `e106cbf20d`: all CI gates passed, including complete test suites, E2E, build, production bundle boot, public-install smoke test, and canary dry run. Greptile and Paperclip source reviews both rated 5/5, with no unresolved findings. The focused suites accept `PAPERCLIP_MUSE_MAINTENANCE_TEST_DATABASE_URL` and `PAPERCLIP_MUSE_CONTROL_TEST_DATABASE_URL`. Use a disposable test database; fixtures remove test data. ## Risks - Unfinished assignments retain five-second recovery. This change removes idle polling, not all Muse polling. - Signals are process-local. Independent database writers need explicit integration. Startup recovers persisted state. - Qualification deadlines depend on the running process. Existing durable Muse sleep blockers remain unchanged. - The receiver keeps its batching timer. An empty buffer already makes no database calls. - No schema migration or API change. ## Model Used OpenAI Codex, GPT-6 family, with code execution and repository tools. The exact model version is not exposed in this session. ## Checklist - [x] I have included a thinking path that traces from project context to this change - [x] I have specified the model used (with version and capability details) - [x] I have checked ROADMAP.md and confirmed this PR does not duplicate planned core work - [x] I have searched GitHub for duplicate or related PRs and linked them above - [x] I have either (a) linked existing issues with `Fixes: #` / `Closes #` / `Refs #` OR (b) described the issue in-PR following the relevant issue template - [x] I have not referenced internal/instance-local Paperclip issues or links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip` URLs) - [x] My branch name describes the change (e.g. `docs/...`, `fix/...`) and contains no internal Paperclip ticket id or instance-derived details - [x] I have run tests locally and they pass (focused suites; full local run has the environment limitation above) - [x] I have added or updated tests where applicable - [x] I have updated relevant documentation to reflect my changes - [x] I have considered and documented any risks above - [x] All Paperclip CI gates are green - [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups - [x] I will address all Greptile and reviewer comments before requesting merge --------- Co-authored-by: Paperclip <noreply@paperclip.ing> |
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a2d26a83fe |
fix(inbox): keep automatic work out of Mine by default
Keep channel and routine attribution out of Mine unless the person participates directly, is assigned the task, or receives a current addressed request. Apply the same source rules to unread state, archives, and task notifications. Preserve direct comments and current human action requests. Restore the two expressions damaged by redaction during the earlier master merge. Co-Authored-By: Paperclip <noreply@paperclip.ing> |
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dc6dd23ea4 |
Add plugin Runner preparation task contract (#16993)
## Thinking Path > - Paperclip manages work for AI agents. > - Environment plugins can own Runner tasks. > - Core selects provider policy and runtime assignments. > - The execution environment must resolve its own paths and configuration. > - The task API needs a preparation exchange before execution. > - This PR adds that exchange under the existing lease authority. ## Linked Issues or Issue Description **Problem or motivation** The environment task API can start a Runner. It cannot return a prepared provider configuration from Core requirements. **Proposed solution** Add a versioned `prepare` request and `prepared` result. Keep the provider configuration bound to its task and requirements. Check the same company, run, project, and retained-session authority as submission. **Alternatives considered** A shell preparation command would expose execution details in the API. Provider-specific ownership flags would spread this contract across backends. **Roadmap alignment** This extends the existing plugin and remote execution APIs. It does not add a separate execution system. Refs #16977, #15406. The prerequisite #16977 is merged. This PR now targets master. Runner transport and provider implementations follow separately. ## What Changed - Add strict launch requirements and prepared result schemas. - Add the preparation capability version and saved configuration ID. - Apply existing lease and resource checks to preparation. - Document idempotency, cancellation, recovery, and cleanup requirements. ## Verification - `pnpm -r typecheck` passed. - Plugin SDK build passed. - All 55 Dot Runner and native Codex server integration tests passed with Cargo available on PATH. - All 18 environment task runtime tests passed. These include preparation dispatch, inactive leases, wrong run identity, unauthorized projects, result identity, and unknown command rejection. - The broader root suite on the parent refactor finished with 22,420 passing tests, seven failed tests in unchanged Git and diagnostic code, and two suite setup errors because Cargo was absent from its PATH. This PR does not claim a passing full root suite. - No live provider calls or deployment were run. - Standard Greptile and Apex each scored commit `d3ac15906240b7066f5ff505ed2ffd9ef5dd43c1` 5/5. There are no unresolved review threads. - All 55 CI checks passed. Two optional checks were skipped. The branch is ready and mergeable against master. - A fresh master fetch and merge-base check passed immediately before the Apex request. ## Risks - This defines a new optional worker operation. Existing providers keep their current operations. - A provider must validate policy and resource bindings. Schema validation alone does not validate a concrete provider descriptor. - This PR defines the exchange. It does not connect native execution to a preparation provider. ## Model Used - OpenAI Codex, GPT-6. Reasoning and repository tools. The exact serving model identifier and context size are not exposed in this session. ## Checklist - [x] I have included a thinking path that traces from project context to this change - [x] I have specified the model used (with version and capability details) - [x] I have checked ROADMAP.md and confirmed this PR does not duplicate planned core work - [x] I have searched GitHub for duplicate or related PRs and linked them above - [x] I have either (a) linked existing issues with `Fixes: #` / `Closes #` / `Refs #` OR (b) described the issue in-PR following the relevant issue template - [x] I have not referenced internal/instance-local Paperclip issues or links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip` URLs) - [x] My branch name describes the change (e.g. `docs/...`, `fix/...`) and contains no internal Paperclip ticket id or instance-derived details - [x] I have run tests locally and they pass - [x] I have added or updated tests where applicable - [x] I have updated relevant documentation to reflect my changes - [x] I have considered and documented any risks above - [x] All Paperclip CI gates are green - [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups - [x] I will address all Greptile and reviewer comments before requesting merge Co-authored-by: Paperclip <noreply@paperclip.ing> |
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505e1a5582 |
feat(cases): add persistent workflows with same-task agent handoffs (#16959)
## Thinking Path > - Paperclip manages AI agents and their work. > - An agent workflow needs persistent facts and a safe way to transfer work. > - Creating a task for each phase splits the objective, discussion, workspace, and review policy. > - A case can retain the facts while one primary task moves between agents. > - Transfers must survive process failure and preserve private access, budgets, and completion gates. > - This pull request adds durable case handoffs, native case tools, and read-only case pages. > - Prompts describe the workflow. Existing task controls decide when work can run and finish. ## Linked Issues or Issue Description **Problem or motivation** Prompt-driven agent teams need a persistent record that can move through triage, implementation, verification, and correction. Ordinary reassignment does not provide a durable instruction, safe release barrier, or recoverable delivery receipt for an agent handing off its own running task. **Proposed solution** Extend standalone cases with one primary task, a descriptive phase, retained access sources, and a handoff ledger. Apply assignments after source execution and workspace settlement. Deliver each transfer through the existing durable wake queue. Provide `create_case`, `read_case`, `update_case`, and `handoff_case` in the native runner. Creation requires kickoff and explicit workflow text. An explicit handoff to `done` closes the case when normal task completion is accepted. **Alternatives considered** Do not add a workflow engine, filesystem queue, configured state graph, or one task per phase. The workflow document combines transition prose with an optional Mermaid `stateDiagram-v2` map. The server does not execute the diagram. The Pipelines experiment removed on master stays removed. **Roadmap alignment** This extends Agent Reviews and Approvals, Enforced Outcomes, Bounded Run Recovery, and Activity Log attribution. Existing approval, review, budget, privacy, workspace, and responsible-user rules remain authoritative. Related work: [ordinary handoff wake recovery](https://github.com/paperclipai/paperclip/pull/15019). This feature adds a separate persisted case-handoff receipt and release barrier. ## What Changed - Add case routing fields, retained access sources, durable handoff history, delivery leases, and replay-safe migrations. - Keep the same primary task across agent phases. Preserve each returning agent's own session and the task's workspace. - Fence outgoing mutations, wait for provider and workspace release, and recover delivery without duplicate task comments or runs. Recheck current assignment permissions as the original caller before applying a delayed transfer. Scope a run Stop to that run’s own handoff intents, so repeated old Stop requests preserve newer work. Cancelling terminal intent without a source run also requires fenced current task ownership, including native retries and preparation with an old checkout. For Cloud callers, revalidate current stack membership with an uncached Cloud RPC and derive owner elevation from the current managed setting. - Keep case reads, documents, assets, Audit, and live events inside retained task/project permissions. - Add native case creation/read/update/handoff tools. Store required workflow text and initial documents on the first task. Page oversized case facts and referenced document bodies through the dedicated tool with bounded UTF-8 JSON, current routing versions, snapshot conflicts, and current source authorization on every page. - Add read-only case lists and detail pages, task-style list controls, compact dotted field tables, linked handoff tasks, and case filters in Audit. - Add native/legacy integration tests, migration/restart tests, browser coverage, and bounded live receipt fixtures. Extend the trusted sandbox condition to cover the new subscription fixture profile. - Hide obsolete paused-agent warnings on completed or cancelled task threads. - Synchronize the company-switch settings test with React effects after a CI failure. Preserve its security assertions and production remount behavior. ## Verification The branch directly includes master `9ef434fe79`. The required `ci / verify` and `ci / e2e` gates pass on head `765fccd67c`. [Current-head CI](https://github.com/paperclipai/paperclip/actions/runs/39464348614) passes typecheck, build, tests, and all eight browser shards. Security checks pass. [Greptile gives this exact head 5/5](https://github.com/paperclipai/paperclip/pull/16959#issuecomment-6291156549), with no unresolved review threads. The optional Paperclip Review check remains queued because its assigned agent is paused. It is not a required branch check. No check result was overridden. Local workspace typecheck and build pass after the master merge, along with database migration checks, token gates, map checks, Storybook catalog checks, and the Copilot profile identity check. Standard builds refresh Runner vendor output. Focused checks pass 2,008 API/paging/context tests and 7 strict case protocol tests. The final commit changes one test fixture only; its ten tests, UI typecheck, and token gates pass. No production source changed in that commit. On current head `765fccd67c`, all **194 critical workflow tests** executed and passed with no skipped tests in those files: - 38 Stop/ownership tests, including board completion intent, native retries, stale Stop, and preparation with an old checkout. - 2 actual legacy process/HTTP handoff tests, including scratch failure, a closed-stdio child that continues writing, and recovery through a fresh worker after the process group stops. - 5 migration tests, including SQL column metadata, preserved null authority context, and all six prior-numbering receipts. - 3 process-settlement and 5 scratch tests. - 88 handoff-service, 18 heartbeat handoff, and 21 native case-tool integration tests. - 7 bounded case/document-read projection tests and 7 strict protocol-contract tests. The current CI checkout was `fed65d49`, merging `765fccd67c` into master `9ef434fe79`. Its new document regressions reconstruct exact Unicode/escaped bodies and revisions through real native authority and authenticated HTTP with generic API tools disabled. They cover case-owned, primary-task, and linked-task documents; routing on every page; stale document snapshots; access loss and unlinking; unrelated/foreign/private sources; system documents; and quarantined content. Active-task document tools retain their existing behavior. These are current-head test results from the first CI attempt; the browser-only retry did not rerun these suites. The full `64fdd3403f` CI failed one separate settings test: after a company switch, it observed an unsettled API-key draft. The production component and test were unchanged from prior green source. Production switches remount both keyed settings layers; the test directly reused an unkeyed view and used a timer tick instead of waiting for React effects. The final commit replaces that fixture synchronization with React `act`. The exact secret-clearing assertions and all timeouts remain unchanged. The original assertion failure remains recorded; no unchanged retry was used. The narrow unchanged baseline and fixed fixture each pass 10 tests. The upstream result-paging merge preserves case capture namespaces and current asset privacy. Its API integration suite executed 39 of 41 tests successfully, with two skipped; the optional assigned-result PRP integration test was skipped. Neither skipped suite is counted in the 194 critical tests or as live provider proof. All 361 upstream migration entries and SQL bodies remain unchanged. Six case migrations follow master as 0363–0368 with identical SQL hashes. Official Drizzle generators produced the combined metadata and five retained snapshots. Generation reports no schema changes, and the snapshot drift test passes. The earlier `ce361ae5d0` CI passed on attempt 1, including its then-current 179 critical tests. Fresh review later identified unusable document references with generic API tools disabled; the bounded document reads and ten additional authenticated HTTP tests address that finding. The full local `pnpm test:run` attempt was cancelled after this Mac exhausted PostgreSQL semaphore capacity; it is **not** counted as a pass. Later database attempts also stopped before assertions or skipped, including one sandbox socket denial. Two original stale-Stop regressions did reproduce the bug against the old source. A REST serialization assertion passed after two preserved database-startup failures. No test timeout was increased. All 194 assertions listed above executed and passed in current-head CI. The complete 385-file, 3,963-test UI shard also passed after the fixture repair. A configured-provider receipt workflow passed 13 backend checks across triage → implementation → verification → correction → done, using one task and four work runs. The saved receipt is revision 2 with total 6 USD; case and task both closed. The original canonical attempt remains failed because its browser assertion confused the terminal destination with completed-task tooltips. The corrected full browser verifier passed on the same retained database and original runs, with no additional provider calls. The last clean-build browser readback is on `6a86c54a53`; later changes affect recovery, authorization, bounded reads, and settlement. Accounted work cost is a $1.010574 rate-card estimate; provider billing and setup-probe usage are unavailable. Copilot profile 49 passed the unchanged seven-fixture private protocol pack (46/46 checks, no retries) and the product file-edit canary after master's completion-replay change. All 60 bound implementation hashes remain unchanged on the current source. Historical profile-47/48 identities and results remain intact. See the [profile-49 compatibility record](https://github.com/paperclipai/paperclip/blob/codex/persistent-case-handoffs/doc/plans/2026-10-20-copilot-completion-recovery-compatibility-v49.json). This is bounded compatibility evidence, not a fresh full matrix, installed-package product test, or Daytona rollout. Preserved CI failures and retries: - On `20662930ac`, Slack managed setup failed a five-second success assertion after reload. Its test/application path was unchanged from a prior green head. One unchanged-source retry passed all 25 tests in that shard; no source or timeout changed. - On `9402b4f17a`, two CI workers received shutdown signals at 15:24:19 UTC. Neither log had an assertion failure before interruption. One unchanged-source retry of each passed all Runner static checks and all 32 tests in browser shard 6; both aggregates passed. The next head, `7b4374edaf`, passed all CI without retries. - On `295f289b5a`, serialized shard 9 timed out during its first device-login test, then the next test found an active login lease. Direct login/test paths were unchanged from a prior green head. Cold import plus a timed-out async body using the next test's mutable actor/store is the supported fixture-race explanation; no request trace proves that sequence. The original failure remains recorded. One unchanged-source retry passed all 294 tests in 19 files, including all 41 device-login tests. No login source or timeout changed. The subsequent `ce361ae5d0` CI passed without retries. - On `64fdd3403f`, one company-switch settings assertion observed an unsettled draft. The final test-only commit uses React `act` without changing assertions, timeouts, or production code. On `765fccd67c`, all ten settings tests and the complete 385-file, 3,963-test UI shard passed. - On `765fccd67c`, browser shard 3 completed the split-handoff assertions, then cleanup received HTTP 500 from run cancellation after a one-second PostgreSQL row-lock timeout. The extra chat run was reporting completed work while teardown began. Cleanup stopped before restoring a global experiment flag, causing a later assertion to fail. Relevant production and test paths are unchanged from an earlier green commit. Stop's lock order is consistent, and no nested self-lock was found; the exact PostgreSQL blocker was not recorded. One unchanged-shard retry passed. The original failure, trace, and downstream flag failure remain recorded. No Stop implementation, cleanup assertion, or timeout changed. The retry supports intermittent cleanup contention; it does not identify the original blocking transaction. ## Risks - Local process transfers require host-owned PID/group absence. Missing or uncertain termination evidence keeps delivery pending, independently of scratch setup. - Handoff admission and task cancellation share execution ownership. New regression tests cover temporary holds, late source writes, and uncertain provider termination. - Retained private sources use an intersection of existing permissions. This intentionally fails closed when a source is missing or an existing task cannot preserve that boundary. - Migrations add tables and indexes. They preserve master history and can replay over prior feature installs. Migration 0368 adds nullable internal authorization provenance with no default or authority backfill. Historical transfers still awaiting release without this context fail closed; an operator must cancel them and request a new handoff. - Delayed Cloud handoffs depend on the current Cloud membership RPC. An unavailable, ambiguous, expired, or mismatched response holds the handoff for retry; it does not reuse cached authority or grant access. - Bounded reads reload and reauthorize the selected projection per page. Underlying work grows with the data size and number of pages. Changed data or routing requires restarting from offset zero without the old snapshot. - Phase names and workflow diagrams remain advisory. They do not satisfy review or approval gates. - This is a large, cross-cutting PR. The maintainer requested one PR for the whole feature; the commits separate data, runtime, UI, and qualification work. ## Model Used OpenAI Codex, GPT-6 family, with tool use, code execution, and delegated code review. The exact deployment model ID and context-window size were not exposed in the session. Live fixture agents used the explicitly configured provider model recorded in their test evidence. ## Checklist - [x] I have included a thinking path that traces from project context to this change - [x] I have specified the model used (with version and capability details) - [x] I have checked ROADMAP.md and confirmed this PR does not duplicate planned core work - [x] I have searched GitHub for duplicate or related PRs and linked them above - [x] I have either (a) linked existing issues with `Fixes: #` / `Closes #` / `Refs #` OR (b) described the issue in-PR following the relevant issue template - [x] I have not referenced internal/instance-local Paperclip issues or links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip` URLs) - [x] My branch name describes the change (e.g. `docs/...`, `fix/...`) and contains no internal Paperclip ticket id or instance-derived details - [x] I have run tests locally and they pass - [x] I have added or updated tests where applicable - [x] I have updated relevant documentation to reflect my changes - [x] I have considered and documented any risks above - [x] All Paperclip CI gates are green - [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups - [x] I will address all Greptile and reviewer comments before requesting merge --------- Co-authored-by: Paperclip <noreply@paperclip.ing> |
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9225796a4e |
fix(runner): page oversized assigned tool results (#16980)
## Thinking Path > - Paperclip is the open source app people use to manage AI agents for work. > - Native agents receive assigned app-tool results through the durable Runner protocol. > - The assigned-tool bridge returned complete provider responses without a size bound. > - A large response could exceed the encrypted command limit after the upstream call had completed. > - The provider then waited for a result that the controller could not deliver. > - This pull request saves large governed responses and returns a small reference with a scoped page reader. > - Agents can retrieve the full result without repeating the original action. ## Linked Issues or Issue Description **What happened?** Large app-tool responses could leave native tool calls pending even though the upstream service completed. The durable command limit is about 510 KiB. The assigned-tool bridge did not account for that limit. A 720,048-byte regression response failed the delivery-size assertion before this change. **Expected behavior** Deliver a bounded response and a way to retrieve all saved content. Keep the original action at one execution. Preserve task, agent, company, responsible-user, and current-run access checks. **Steps to reproduce** 1. Run a native agent with an assigned tool that returns more than 510 KiB of JSON. 2. Let the upstream tool complete. 3. Observe that the original bridge returns the oversized object directly, so the durable controller cannot queue its result. Related: #14734 preserves uncertain tool outcomes across shutdown and restart. This change keeps that protection. #16517 handles native MCP content projection on a different transport; it does not bound native assigned-tool results. ## What Changed - Save governed assigned-tool responses above 500,000 encoded bytes using the existing response asset storage, quotas, and audit path. - Add `read_tool_result` for UTF-8 JSON pages from the same task and agent. Each encoded page is capped at 500,000 bytes, including JSON escaping and metadata, with remaining content available through the next byte offset. It works when generic API tools are disabled. - Reuse existing authenticated asset reads and responsible-user checks. Retrieval does not invoke the upstream service. - Preserve uncertain delivery if storage fails after an action completes. - Add regression, fault, authorization, and opt-in live Codex checks. Document the transport and access contract. ## Verification - Red: the original integration regression returned 720,048 bytes against unchanged production code and failed its bounded-response assertion. The follow-up regression also showed that a 480 KB result was unnecessarily saved under the original 24 KiB policy. - Green: results through 500,000 encoded bytes stay inline. Larger responses are saved in full. Real HTTP integration tests reconstruct the complete Unicode result after controller recreation in exactly two pages, in both standard and low-trust configurations, with one upstream execution. - The encoded-size boundary and escape-heavy Unicode tests verify that every page fits 500,000 bytes, cursors advance on valid UTF-8 boundaries, and concatenating pages exactly reconstructs the original JSON. Storage-failure tests preserve an uncertain outcome without repeating the action. - The focused unit/API run passes 1,957 tests; the changed real HTTP tests pass. `pnpm -r typecheck`, `pnpm build`, `node scripts/check-maps.mjs`, and `git diff --check` pass. - Real Codex acceptance passes with `gpt-6.1-sol` through Codex CLI 0.160.0 and native Runner, on macOS ARM64 with `low_trust_review` and generic API tools disabled. Codex requests every page in order, receives all 660,098 original bytes, and returns the final verification field. The two encoded pages are 500,000 and 160,543 bytes; the upstream operation executes once. Runner closes successfully in a 34.1-second probe. Only the disposable database's connection/worker counts were reduced to fit the host's remaining semaphore capacity. - The native-PRP regression also passes with escape-heavy Unicode pages over 1 MB in total and a separate inline result containing 200,000 backslashes. A scripted provider verifies both complete results by SHA-256. It proves the intermediate text wrapper can exceed 700 KB because the native transport decodes it before queuing the bounded PRP result; every result object stays within 500,000 encoded bytes. Native binaries are required for the local run, preventing a silent skip. - A second real-Codex probe with escaped Unicode, quotes, backslashes, newlines, and NULs also passes: every original byte of a 720,098-byte JSON response is retrieved in two encoded pages of 500,000 and 460,543 bytes. The model returns the final field, the upstream call executes once, and Runner closes in 32.6 seconds. This uses the same production source with only the synthetic fixture content varied. - The live probe exercises real PRP, persistence, and authenticated asset reads. It does not claim the original staging task resumed or full heartbeat checkpoint acceptance. - Earlier broader local testing passed 103 tests but could not start the second database for the existing `rejects a stale source-run question over public HTTP and accepts it from the next run` test. Extending its timeout exposed PostgreSQL initialization failure on this semaphore-exhausted host. The earlier local `pnpm test:run` attempt was interrupted and is not claimed as passing. Full CI passes on current head `cd32237ee5429765b8f349402ac3c79cceec3e6b`. GitHub reports 55 successful checks, two skipped Storybook checks, and one neutral Paperclip agent review. Greptile is 5/5 on this head with no review threads. - Additional Paperclip agent review is incomplete: it withdrew the earlier double-escaping finding after inspecting the native regression, found no new actionable defects, and reported stalled large-source reads prevented independent inspection of the transport decoder. Its neutral assessment is [recorded here](https://github.com/paperclipai/paperclip/pull/16980#issuecomment-6295579705). This limitation remains separate from the passing local native transport, real Codex acceptance, full CI, and Greptile results. ## Risks - Large responses now consume existing response-storage quota and require page reads. Larger pages use more provider context. Results are preserved in full; each encoded page leaves about 22 KiB below the PRP command limit for the command envelope. - A storage failure after execution retains an uncertain delivery outcome. The bridge must not report that the upstream action failed or invite a replay. - The dedicated reader grants access only to saved responses for the current task and agent. The asset route also checks the original responsible user. - Runner command limits and receipt rules remain unchanged. No migration or separate Runner protocol rollout is required. - This PR does not deploy the repair or resume an existing blocked task. ## Model Used OpenAI Codex (GPT-6), with reasoning, tool use, and code execution. The exact serving model ID and context-window size are not exposed in this session. The opt-in acceptance probe requests `gpt-6.1-sol` through Codex CLI 0.160.0. ## Checklist - [x] I have included a thinking path that traces from project context to this change - [x] I have specified the model used (with version and capability details) - [x] I have checked ROADMAP.md and confirmed this PR does not duplicate planned core work - [x] I have searched GitHub for duplicate or related PRs and linked them above - [x] I have either (a) linked existing issues with `Fixes: #` / `Closes #` / `Refs #` OR (b) described the issue in-PR following the relevant issue template - [x] I have not referenced internal/instance-local Paperclip issues or links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip` URLs) - [x] My branch name describes the change and contains no internal Paperclip ticket id or instance-derived details - [x] I have run tests locally and they pass for the changed behavior (focused unit/API, real HTTP, and real Codex acceptance); the broader local database limitation is documented above - [x] I have added or updated tests where applicable - [x] I have updated relevant documentation to reflect my changes - [x] I have considered and documented any risks above - [x] All Paperclip CI gates are green - [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups - [x] I will address all Greptile and reviewer comments before requesting merge --------- Co-authored-by: Paperclip <noreply@paperclip.ing> |
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2c96f76780 |
feat(connections): add model-backed prompt injection prevention
Add opt-in OpenRouter checks at existing tool-result boundaries with regex fallback, service accounting, and settings on Connections. Make migration 0362 safe to replay over existing or partially applied schema state. Co-Authored-By: Paperclip <noreply@paperclip.ing> |
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33cc567f75 |
Add lease-scoped Runner task hooks to environment plugins (#15406)
## Thinking Path > - Paperclip coordinates AI agents and their runs. > - Environment plugins own remote capacity. > - A plugin needs a typed API to start and stop its installed Runner. > - Core must derive authority from the saved lease. > - A lost reply or controller restart must not lose cleanup authority. > - This PR adds the worker contract and the host task service. > - Native execution and Runner changes are separate PRs. ## Linked Issues or Issue Description **Subsystem affected** Plugin SDK and environment lease services. **Current behavior** Environment plugins have no typed Runner task hook. Core cannot dispatch these tasks or recover their credential handoff through a saved lease. **Proposed behavior** Add validated task operations, worker negotiation, company and project checks, retained-session authorization, and durable cleanup. Keep credentials out of lease metadata. **Additional context** This PR is the first part of a smaller series. Runner installed-home support is in #16977. Native execution and setup are in #16978. Both are stacked drafts. This PR does not enable native plugin execution, change default environments, add a route, or add a database migration. ## What Changed - Add `supportsTasks` and `onEnvironmentTask` with seven typed operations. - Validate worker requests and responses. Reject shell commands and file transfer operations. - Pin dispatch and cleanup to the saved company, lease, plugin, and driver. - Authorize projects and retained sessions. Validate the current run separately from the retained PRP identity. - Save dispatch before the provider call. Fence admission during cleanup. Require observed process termination. - Save account writeback authority on the lease. Recover Codex refreshes through the existing account and secret services. - Document the task API. Keep the Runner, heartbeat, setup, workspace, and provider changes in later PRs. ## Verification - Full `pnpm -r typecheck` and `pnpm build` passed on the separated API scope. - 201 focused tests passed: SDK worker dispatch, task validation, PostgreSQL task lineage, credential recovery, and existing environment cleanup. - The lineage test covers a third run, repeated same-run replacements, a stale submitting run, and exact termination receipts. - Initial commands hit sandbox socket/IPC restrictions. The permitted runs executed PostgreSQL and passed. A typecheck attempt lacked Cargo in PATH; the run with the installed toolchain passed. - The earlier combined implementation had a full local run with 22,286 passing tests, 120 skips, and eight failed assertions. Task fixture failures were fixed before this split. Remaining host Git and temporary-path assertions are recorded in the previous PR revision. This split does not claim a fresh full local suite pass. - The standard Greptile review scored this API head 5/5 with no unresolved threads. CI is green. The single Apex review also scored this head 5/5 with no actionable findings. - Fresh API CI lost a self-hosted runner during server shard 9. GitHub reported lost communication, with no failed test step. The affected jobs passed on retry without code changes. - CI on the prior combined head failed an unchanged workspace dev-server readiness case. No unrelated test fix is included here. Fresh CI is required for this smaller head. - This scope does not run a provider or a Cloud test. The user owns deployment and the intermediate Cloud test. ## Risks - The API is opt-in. Native plugin execution requires the later integrations. - Providers must make task submission idempotent and prove descendant termination. - A failed status read or credential export keeps the lease available for cleanup. - Codex refresh writeback requires the same active grant, secret reference, and session epoch. Revocation or account replacement discards the old refresh. ## Model Used OpenAI GPT-6 through Codex. Used source inspection, code execution, tests, and GitHub tools. The exact served model ID and context-window size are not exposed in this session. ## Checklist - [x] I have included a thinking path that traces from project context to this change - [x] I have specified the model used (with version and capability details) - [x] I have checked ROADMAP.md and confirmed this PR does not duplicate planned core work - [x] I have searched GitHub for duplicate or related PRs and linked them above - [x] I have either (a) linked existing issues with `Fixes: #` / `Closes #` / `Refs #` OR (b) described the issue in-PR following the relevant issue template - [x] I have not referenced internal/instance-local Paperclip issues or links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip` URLs) - [x] My branch name describes the change (e.g. `docs/...`, `fix/...`) and contains no internal Paperclip ticket id or instance-derived details - [x] I have run local checks and recorded failures and their results above - [x] I have added or updated tests where applicable - [x] I have updated relevant documentation to reflect my changes - [x] I have considered and documented any risks above - [x] All Paperclip CI gates are green - [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups - [x] I will address all Greptile and reviewer comments before requesting merge Co-authored-by: Paperclip <noreply@paperclip.ing> |
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98d17da1e2 |
Fix native monitor dispatch and finalization recovery (#16975)
## Thinking Path > - Paperclip is the open source app people use to manage AI agents for work. > - Native runs persist their results and workspace before they release execution. > - A task monitor must wait for that settlement before it starts the next run. > - The scheduler checked provider status but did not check unfinished finalization. > - A timer could dispatch too early, then its old finalizer could no longer find the consumed schedule. > - This pull request delays dispatch and reconciles prior delivery from server records. > - The task can continue without repeating the provider turn or removing a newer run's ownership. ## Linked Issues or Issue Description **What happened?** A native run saved a yielded monitor result while workspace finalization needed recovery. Its timer dispatched after the provider stopped. The follow-up failed because the earlier run still held workspace recovery. The old finalizer then retried `monitor_wait_authority_lost` indefinitely. **Expected behavior** Timer dispatch waits for native finalization. If an older timer already dispatched, the finalizer uses its saved scheduling receipt and admitted successor to settle the old result. It preserves current task state and ownership. **Steps to reproduce** 1. Schedule a task monitor from a native run and save a yielded result. 2. Leave native finalization retryable after the provider reaches a terminal state. 3. Let the monitor become due. Before this change, the scheduler consumes it. 4. Restore workspace persistence and retry the old finalizer. Before this change, the missing schedule leaves it retryable. **Paperclip version or commit** Reproduced against master `34be1b831bcaba070264ae8d214ceffe6a8f9eab`. **Deployment mode** Self-hosted server built from source, with PostgreSQL and the native runner. Related recent recovery work: #16962 and #16963. No duplicate repair found for this failure. ## What Changed - Scheduled and manual monitor dispatch wait for unfinished native finalization. If the monitor expires during workspace recovery, the accepted result can settle into the persisted schedule, and the scheduler then applies its existing expiry policy. New monitor-wait results still require an unexpired, unexhausted schedule. - A narrow reader joins the run's server-issued monitor receipt to its durable wake and admitted successor. - The finalizer and locked status commit verify that evidence and preserve current task ownership. They do not create another wake. - Monitor delivery participates in assessment identity, so recovery can replace a prior error decision without violating the decision ledger's uniqueness constraints. - PostgreSQL regressions cover saved-result replay, active successors, wrong task or agent, missing receipts, unadmitted wakes, ownership races, and failed workspace persistence. - The execution contract and verification maps describe the recovery boundary. ## Verification - Red: the saved monitor regression remained `retryable_failure` instead of `committed` on unpatched code. - Red: the scheduler admitted a wake while terminal-run finalization remained retryable. - Red/green: two PostgreSQL cases reproduce timeout during workspace recovery for scheduled and manual checks. Before the review repair, both remain `retryable_failure` with `monitor_wait_authority_lost`. Afterward, both commit, apply board escalation once, preserve the saved result, and enqueue zero provider wakes. New completion still rejects the expired schedule. - Typecheck: `pnpm -r typecheck` passed. - Build: `pnpm build` passed. - Maps: `node scripts/check-maps.mjs` passed. - Review: Greptile 5/5 and Ponytail Paperclip Review 5/5 on the current head, with no unresolved findings. Both reviews are static; execution evidence is recorded separately above and below. - Linux staging: the original repair passed 170 tests across monitor integration, scheduling, status arbitration, and workspace finalization. The expanded suite passes all 172 tests, including both new timeout regressions. - Live acceptance: deployed the original repair to the authorized Linux ARM64 self-hosted instance. The stranded saved result finalized automatically; the original task then completed through normal admission, with its final answer persisted after browser reload. The other original task was already complete and its external delivery was verified without repeating it. - The initial Mac regression run passed 68 tests, but three suites failed during embedded PostgreSQL startup. A subsequent focused run confirmed the host had exhausted its PostgreSQL semaphore allowance. Linux verification uses isolated databases; the local failure logs remain preserved. - The local full test suite is not claimed as passed. It is blocked by the same PostgreSQL startup limitation; full-suite CI passed on head `8bc29d1b7783446f397b858e558083570a96bb66` ([run](https://github.com/paperclipai/paperclip/actions/runs/39447913466)). ## Risks - A delivery match must not grant new execution authority. The lookup requires the original run's server receipt and a matching company, agent, task, wake, and admitted successor. The locked commit rejects old-run checkout ownership and permits no status effects. - Workspace persistence must succeed before settlement. Its existing failure path remains effective. - The scheduler waits while a native finalizer is unfinished. Workspace recovery must settle before dispatch; elapsed monitor limits transfer to the existing scheduler recovery policy instead of stranding the result. Neither settlement path renews a deadline or changes budget, approval, pause, or provider authority. - No schema, migration, credential, or provider configuration change. ## Model Used OpenAI Codex, based on GPT-6, with tool use and code execution. The exact backend model ID and context-window size are not exposed in this session. ## Checklist - [x] I have included a thinking path that traces from project context to this change - [x] I have specified the model used (with version and capability details) - [x] I have checked ROADMAP.md and confirmed this PR does not duplicate planned core work - [x] I have searched GitHub for duplicate or related PRs and linked them above - [x] I have either (a) linked existing issues with `Fixes: #` / `Closes #` / `Refs #` OR (b) described the issue in-PR following the relevant issue template - [x] I have not referenced internal/instance-local Paperclip issues or links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip` URLs) - [x] My branch name describes the change (e.g. `docs/...`, `fix/...`) and contains no internal Paperclip ticket id or instance-derived details - [x] I have run tests locally and they pass - [x] I have added or updated tests where applicable - [x] I have updated relevant documentation to reflect my changes - [x] I have considered and documented any risks above - [x] All Paperclip CI gates are green - [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups - [x] I will address all Greptile and reviewer comments before requesting merge --------- Co-authored-by: Paperclip <noreply@paperclip.ing> |
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24758b9da1 |
Avoid loading tool schemas for effective assignments (#16969)
## Thinking Path > - Paperclip is the open source app people use to manage AI agents for work. > - Tool profiles define which tools an agent can use. > - Run preparation and connection checks resolve these assignments from the database. > - These callers need tool IDs and names, but the existing lookup also reads complete schemas and provider metadata. > - Repeated lookups transfer data that these callers discard. > - This pull request adds a small assignment projection through the same permission resolver. > - The benefit is less database transfer and JSON work with current permission checks and the same public response. ## Linked Issues or Issue Description **What existing behavior does this improve?** Effective tool assignment reads during run preparation, native runtime setup, and connection policy checks. **Subsystem affected** server/ — tool access and orchestration services. **Current behavior** Internal callers use the public effective-profile lookup. Its catalog query reads complete tool rows, including input schemas, output schemas, annotations, and provider metadata. These callers only use catalog IDs and names. **Proposed behavior** Internal callers use an assignment lookup that selects catalog identity and selector fields. Both lookups share one resolver. The public effective-profile endpoint keeps its complete definitions. **Reason and benefit** Large catalogs increase database transfer and JSON work for every assignment lookup. The smaller query avoids that payload without caching permissions or changing query frequency. **Breaking changes** None. No route, schema, migration, permission rule, or public response changes. Related: Refs #16761, Refs #16723. The former narrows profile summary reads. The latter changes how the gateway presents tool definitions. Neither narrows this internal effective-assignment lookup. ## What Changed - Share effective-profile resolution between full definitions and assignment records. - Select the existing catalog identity and selector projection for internal assignments. - Use the assignment lookup in run preparation, native runtime setup, and connection policy checks. - Add real PostgreSQL tests for selectors, exclusions, current profile and binding state, company boundaries, and returned payload size. - Document the database read contract. ## Verification - Five focused test files passed: 521 tests. They cover tool access, connection intents, runtime preparation, native runtime context, and the new assignment lookup. - `pnpm -r typecheck` passed. - `pnpm check:module-boundaries` passed. - The PostgreSQL fixture compares the full authorization result with the assignment result. It checks all selector types, excludes removed tools, and observes catalog, profile, and binding changes on later calls. - The payload test measures rows returned by PostgreSQL before application mapping. With large schema and annotation fields, the assignment result is less than 1% of the full catalog payload. This is a synthetic fixture result, not a fleet savings estimate. - `pnpm build` passed. - The full local suite is in progress. It found two Git fixture failures that also reproduce on unchanged master with `init.defaultBranch=main`. Both pass with a process-only `init.defaultBranch=master` setting. The global Git configuration was not changed. This earlier failure remains recorded; it is not counted as a clean first pass. - Apex review: 5/5, no actionable comments. All 54 CI checks passed; two conditional jobs were skipped. - The broader local run also reached two UI test timeouts and one adapter test timeout. All three passed when rerun in isolation with unchanged source. The exact cause of these timeouts is not established. No UI or adapter implementation is changed by this PR. The CLI import/export journey passes its assertions but its local teardown fails with `ENOTEMPTY` while a runtime context asset is written. Its CI check passed. The complete local suite is not reported as a clean pass. ## Risks - Both lookups share permission resolution. Existing tool access tests and result parity checks cover that extraction. - Future assignment callers must use the fields in the smaller result. Typechecking rejects attempts to read full schemas from it. - The lookup still scans the active company catalog and resolves current connections on every call. This change reduces returned bytes; it does not reduce query count or introduce a cache. - No database migration or operational configuration change is required. ## Model Used - OpenAI GPT-6 through Codex, with tool-assisted source inspection, implementation, and test execution. The exact model variant and context window are not exposed in this session. ## Checklist - [x] I have included a thinking path that traces from project context to this change - [x] I have specified the model used (with version and capability details) - [x] I have checked ROADMAP.md and confirmed this PR does not duplicate planned core work - [x] I have searched GitHub for duplicate or related PRs and linked them above - [x] I have either (a) linked existing issues with `Fixes: #` / `Closes #` / `Refs #` OR (b) described the issue in-PR following the relevant issue template - [x] I have not referenced internal/instance-local Paperclip issues or links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip` URLs) - [x] My branch name describes the change (e.g. `docs/...`, `fix/...`) and contains no internal Paperclip ticket id or instance-derived details - [x] I have run tests locally and they pass - [x] I have added or updated tests where applicable - [x] I have updated relevant documentation to reflect my changes - [x] I have considered and documented any risks above - [x] All Paperclip CI gates are green - [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups - [x] I will address all Greptile and reviewer comments before requesting merge Co-authored-by: Paperclip <noreply@paperclip.ing> |
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ba3bdd0675 |
Keep Muse maintenance idle on unclaimed warm instances (#16974)
## Thinking Path > - Paperclip is the open source app people use to manage AI agents for work. > - Cloud keeps unclaimed applications warm so new users can enter quickly. > - Empty warm applications use an existing standby predicate to skip recurring database work. > - Muse maintenance starts without that predicate and scans its tables every five seconds. > - These scans keep an empty database active even when no Muse binding exists. > - This pull request applies the existing standby predicate to Muse startup and recurring maintenance. > - The benefit is idle database compute while the application stays warm, with normal maintenance after claim. ## Linked Issues or Issue Description **What happened?** `createApp` starts Muse maintenance without the warm standby guard used by other background services. The worker updates qualification evidence at startup and reads binding tables every five seconds, including on an empty unclaimed instance. **Expected behavior** An unclaimed warm application must not run recurring database work. Muse maintenance must resume after the signed claim, without a process restart. **Steps to reproduce** 1. Start the maintenance service with background work disabled. 2. Advance the timer beyond several five-second sweeps. 3. Observe database calls from the original implementation despite the disabled state. The new regression test uses real PostgreSQL. The original source fails its zero-query assertion; the patched source passes. **Paperclip version or commit** Reproduced on `813e808af46` before this fix. Related: Refs #16448. ## What Changed - Pass the Cloud standby predicate to Muse maintenance. - Admit both the startup evidence update and recurring sweeps only when background work is enabled. - Mark startup evidence once, before reconciliation. Retry that write after a database failure. - Add PostgreSQL tests for standby, claim, later ticks, default deadline enforcement, and startup-write failure. - Document the maintenance boundary. ## Verification - Five focused test files passed: 278 tests. They cover Muse maintenance, Muse control and qualification routes, and Cloud standby behavior. - Controlled regression: the new standby test fails against the original maintenance source. The patched source was restored after the comparison. - The new PostgreSQL test advances ten minutes while admission is closed and observes zero database operations. It opens admission and verifies the persisted qualification evidence update and reconciliation. Later sweeps retain a single successful startup update. - `pnpm check:module-boundaries` passed. - `pnpm -r typecheck` passed. - `pnpm build` passed. - All 54 CI checks passed; two conditional jobs were skipped. - Apex review: 5/5, no actionable comments or unresolved threads. - The full local test command is still running. The focused tests, workspace typecheck, build, and complete CI matrix above are the finished checks. ## Risks - Claimed workspaces retain existing Muse maintenance. The app gate depends only on warm standby. It does not suppress deadline enforcement or terminal cleanup during idle task drain. - Work resumes on the next five-second maintenance tick after claim. Request-driven work remains available through the existing claim path. - The receiver keeps its existing lifecycle. Its empty pending-contact map causes no database writes in standby. - No database migration, provider configuration, or authority rule changes. - Broker and receiver effects are mocked in the new maintenance tests. The database operations are real. Existing Muse control tests cover the broker boundary; no live Muse provider qualification is claimed. ## Model Used - OpenAI GPT-6 through Codex, with tool-assisted source inspection, implementation, and test execution. The exact model variant and context window are not exposed in this session. ## Checklist - [x] I have included a thinking path that traces from project context to this change - [x] I have specified the model used (with version and capability details) - [x] I have checked ROADMAP.md and confirmed this PR does not duplicate planned core work - [x] I have searched GitHub for duplicate or related PRs and linked them above - [x] I have either (a) linked existing issues with `Fixes: #` / `Closes #` / `Refs #` OR (b) described the issue in-PR following the relevant issue template - [x] I have not referenced internal/instance-local Paperclip issues or links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip` URLs) - [x] My branch name describes the change (e.g. `docs/...`, `fix/...`) and contains no internal Paperclip ticket id or instance-derived details - [x] I have run tests locally and they pass - [x] I have added or updated tests where applicable - [x] I have updated relevant documentation to reflect my changes - [x] I have considered and documented any risks above - [x] All Paperclip CI gates are green - [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups - [x] I will address all Greptile and reviewer comments before requesting merge Co-authored-by: Paperclip <noreply@paperclip.ing> |
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4b05795712 |
fix(github): reuse review instructions across native turns (#16971)
## Thinking Path > - Paperclip is the open source app people use to manage AI agents for work. > - GitHub events continue an ordinary task and can reuse its provider conversation. > - Each automatic event appended the full review policy and PR description. > - Native GitHub follow-ups also repeated task history because only Slack used the compact path. > - This pull request separates admitted review configuration from commit updates. > - A verified resume sends the current messages and changed configuration. A fresh session gets full context. > - This reduces repeated input while retaining review rules and current tool checks. ## Linked Issues or Issue Description Refs #13959, #16645, #16901. **What happened?** Opening a PR and pushing twice stored three full review prompts. A later native turn repeated all three in a retained provider conversation. **Expected behavior** A new event supplies its commit and event data. The harness delivers stable review instructions once per retained conversation and configuration. Fresh sessions receive full instructions. **Steps to reproduce** 1. Enable automatic GitHub reviews for a repository. 2. Open a PR, let the review finish, and push two new commits. 3. Inspect task messages and the native submitted envelopes. Before this fix, the policy and old requests repeat. ## What Changed - Store compact automatic event messages. Fetch the PR description through the existing metadata tool when needed. - Load review instructions from processed deliveries bound to the company, task, agent, and source comments. Preserve each admitted policy snapshot. - Use the existing verified native continuation path for complete GitHub text batches. Deliver configuration changes using a key over endpoint, PR conversation, revision, and instructions. - Keep full bootstrap input for fresh sessions and failed resume, including board follow-ups with no new GitHub event. Retain existing framing for incomplete batches, attachments, interactions, and recovery. - Keep the same configuration identity across automatic review, discussion, and automatic review. Coalesced requests use the last accepted request's admitted policy. - Add regression and database coverage. Update the execution contract and verification recipe. ## Verification - Red: the new event-size regression failed because policy and PR body repeated. The GitHub continuation regression failed because it returned no compact prompt. - Green: focused policy, continuation, native input, and adapter prompt tests passed (231 tests). Native resume/fresh-bootstrap cases passed (9 tests). - The signed-webhook/database case passed at `6296168253`. It checks configuration edits, queued older snapshots, coalesced policy selection, discussion continuity, board follow-ups, and company/task/agent/comment boundaries. The private PostgreSQL template used 12 connections because the host reached its semaphore limit with the default settings. - The earlier broad channel/session integration run passed 1,432 tests. Later review fixes invalidated that run. The latest focused database case passed after those fixes. - Reviewer regressions failed against the previous lookup, then passed with the fix: a mixed-revision batch delivered multiple policies, and a discussion lost the configuration identity. The board wake-to-rendered-prompt regression also failed before repair. - `pnpm -r typecheck`, `pnpm build`, `node scripts/check-maps.mjs`, and `git diff --check` passed on the final source. - Full local `pnpm test:run` exposed follow-up/fixture failures during development. Those cases are fixed and pass separately. The stale run was stopped after source edits. Full-suite validation for the final commit passed in CI. - All required CI checks passed for `6296168253`, including tests, typechecks, build, and clean public npm install checks. The two unrelated Storybook checks were skipped. - A live two-turn Codex smoke could not start: the local macOS sandbox helper rejected execution of the installed Codex 0.153.4 binary. No live GitHub/provider acceptance or deployment is claimed. ## Risks Skipping instructions is safe only after a verified checkpoint resume with the correct previous run. The full bootstrap remains available if resume fails. Changed or previously unknown configuration is sent again. Tests cover these cases. Tool authorization and publication checks still run under the current server policy. No database migration is required. ## Model Used OpenAI GPT-6 through Codex, with tool use and code execution. The exact deployment model identifier and context window are not exposed in this session. No delegated agents were used. ## Checklist - [x] I have included a thinking path that traces from project context to this change - [x] I have specified the model used (with version and capability details) - [x] I have checked ROADMAP.md and confirmed this PR does not duplicate planned core work - [x] I have searched GitHub for duplicate or related PRs and linked them above - [x] I have either (a) linked existing issues with `Fixes: #` / `Closes #` / `Refs #` OR (b) described the issue in-PR following the relevant issue template - [x] I have not referenced internal/instance-local Paperclip issues or links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip` URLs) - [x] My branch name describes the change (e.g. `docs/...`, `fix/...`) and contains no internal Paperclip ticket id or instance-derived details - [x] I have run tests locally and they pass - [x] I have added or updated tests where applicable - [x] I have updated relevant documentation to reflect my changes - [x] I have considered and documented any risks above - [x] All Paperclip CI gates are green - [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups - [x] I will address all Greptile and reviewer comments before requesting merge --------- Co-authored-by: Paperclip <noreply@paperclip.ing> |
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1f3695ac67 |
fix: expire native session failover backups after their issues close (#16866)
## Thinking Path
> - Paperclip is the open source app people use to manage AI agents for
work
> - Native agent sessions that run in a remote sandbox keep a host-side
failover copy of the sandbox's harness state, so a replacement sandbox
can resume the conversation
> - Each session keeps that copy forever, and one copy can reach several
gigabytes
> - On a busy instance these copies fill the volume, and no existing
cleanup touches them
> - Once a session's work is closed, its copy matters only if someone
reopens that work later
> - This pull request expires the copy after the session's issues have
been closed for a configurable window, and makes a reopened issue start
a fresh session
> - The benefit is bounded disk use without breaking active,
recoverable, or leased sessions
## Linked Issues or Issue Description
Bug report described in-PR (bug report template).
**What happened?**
After every remote turn, `checkpointRemoteRunner` writes the sandbox's
runner state and provider session home (for example `codex-home`) to
`durable-sessions/<scope>/failover-backups/current`. Only the same
session's next checkpoint replaces it. No code path deletes a session's
copy when the session ends, its issue closes, or its agent goes away, so
the instance volume fills. On one instance:
- 246 sessions held 17 GB of copies, 84 of them older than a week;
- 24 new sessions added 5 GB in a single day, one copy alone 3.2 GB.
**Expected behavior**
Disk used by failover copies stays bounded. A copy is kept while its
session can still resume (open issue, live run, pending recovery, or
live lease), and expires once the session's issues have been closed for
a while. A reopened issue then starts a fresh native session, instead of
failing with `runner_harness_backup_unavailable` on a replacement
sandbox.
**Steps to reproduce**
1. Run agents with a native runtime in a remote sandbox environment.
2. Let them complete many issues.
3. Watch
`<instance>/runtime/paperclip-runner/durable-sessions/*/failover-backups/current`
grow without bound after the issues close.
**Paperclip version or commit:** `master` at
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813e808af4 |
Remove filesystem history authorization from workspace preparation (#16963)
Remove physical-root source/reader authorization and sticky directory classifications from workspace preparation. Preserve current task/run authority, app-record privacy, credential authorization, containment, and lifecycle/publication integrity.
Validate replacement selections against persisted new inputs and refresh verified checkout ownership so bounded reuse survives earlier workspace relocation. Add real PostgreSQL/Git regressions, a reproducible history-scaling benchmark, and documentation.
Full CI passed all 48 jobs and Greptile scored 5/5 at
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92b238137b |
Connect and configure GitHub Copilot through Apps (#15705)
## Thinking Path > - Paperclip is the open source app people use to manage AI agents for work. > - Apps and AI Connections store credentials and govern access to agent runtimes. > - Users need a supported saved-token connection and config values that survive save and reopen. > - The release must preserve saved-token access and task lifecycle guarantees. > - This pull request will connect Copilot through the normal Apps and AI Connections path. > - The benefit is a reviewable part of the Copilot production release. ## Linked Issues or Issue Description Refs #15701 and #15703. Supersedes setup work in #15562. Base: #15703. Next: #15706. ## What Changed - Require configuration update authority before Copilot credential-bearing model discovery; default to the saved environment and preserve explicit selection for editors. - Keep Copilot discovery passive during reconnect reconciliation; refresh on explicit opening, account/environment changes and reconnect. - Add GitHub AI token connections with encrypted storage, ownership, grants and audit logging. - Keep repository access separate from Copilot runtime authentication. - Probe the selected environment without sending a model prompt and preserve authenticated model selection through save/reopen. - Keep fresh execution admission consistent with normal Copilot setup; persist task model choices without changing provider or permission policy. - Refresh authenticated models after reconnecting the same saved Copilot account, including recovery from a previous authentication error. - Apply the additive provider-default constraint migration through the normal generated migration workflow. ## Verification Runtime #15701 is merged at `d855e550ad8d2a267312983f26457aabf5393c3a`. History #15703 is merged at `df80616d98119cbf5abd40549794d9980a5fabf6`. Remaining source [`42bcbd61299655f7e37aabe6bb5f19bba770ad1d`](https://github.com/paperclipai/paperclip/commit/42bcbd61299655f7e37aabe6bb5f19bba770ad1d) contains the four-file authorization repair. The remaining PR trees preserve six nonoverlapping files from the newer public mainline managed-settings fix and the CI-owned lockfile. No unrelated provider is enabled. The security finding is repaired: existing-agent discovery requires `agent_config:update` before connection selection or token resolution. The saved environment is the default. Authorized editors can select a prospective environment. Both denied board-viewer and agent-reader regressions fail on the original source. All49 route tests and server typecheck pass with the fix. Denied requests perform no connection selection, credential resolution or probe. Current-head security scans pass on both remaining PRs; the repaired thread is resolved. Copilot CLI1.0.88 and profile47 retain digest `sha256:55044aa235e88b3fe36ec8a556ee1e3382590870aab907e4462ef7d64af49cea`. The [qualification record](https://github.com/paperclipai/paperclip/blob/42bcbd61299655f7e37aabe6bb5f19bba770ad1d/doc/plans/2026-10-20-copilot-qualification-v47.json) reports20/20 Product cells,154 assertions and7/7 protocol cases,46 assertions against frozen normal installed source `c2616370800f5f6df45246b0890ba35a7cd2faab`. The exact qualification model is `gpt-5.6-luna`. Every passing Product case confirms cleanup. Original failures remain recorded; automatic behavior retries are disabled. The route-only authorization repair changes no bound runtime/profile bytes and does not relabel the frozen campaign. The ordinary installed remote journey passed saved-token selection, model discovery, normal UI save/reopen, metadata-only Test, completed task, accepted receipt and exact19-byte browser download. An open model catalog caused no additional discovery requests during117seconds. Actual installed runtime smokes passed on macOS ARM64, macOS x64 under Rosetta and native Linux x64 on Daytona. Raw token browser entry was not exercised; encrypted connection creation used the normal API. The first Daytona file attempt timed out during delayed semantic dispatch; its precise stalled layer remains unresolved. Independent ordinary remote delivery and the other19 Product cells passed before one instrumented recheck passed8/8 with unchanged source,prompt,assertions and deadlines. No causal latency repair is claimed. Before the authorization repair, all four final PR heads passed required verify/E2E and fresh Greptile5/5 reviews with zero unresolved threads. Current-head CI/review is running for the two repaired heads. Local focused checks retain129 connection,59 runner,72 shared-eval and88 recovery/workspace passes, plus migration safety and token gates. The additive Copilot migration is361; released master history is preserved. [Cloud normal-package run39414239704](https://github.com/paperclipai/paperclip/actions/runs/39414239704) builds the pre-security source4f3f. All four native producers and Linux package assembly pass; the final clean installed consumers are finishing. All18 retained archives match their hashes;37,863 regular files contain zero selected credentials. That package does not contain the later route repair. The actual final published package must include it and pass the local/Daytona live canaries. The frozen Daytona image remains published and independently verified. No separate full-image scan is claimed. Docker builds run in the cloud. **Remaining:** current-head CI/review, setup and qualification merges, final publication, and ordinary local/Daytona canaries against the actual shipped package. The user explicitly authorizes the maintainer review override; CI remains a merge gate. No production deployment is claimed. Provider USD remains unknown and GitHub-attributed. ## Risks Bad credentials, missing entitlement, runtime installation and unavailable models must remain distinct failures. A connection must not adopt ambient credentials. The constraint migration changes accepted provider values, with no credential-storage migration. Current-master NewAgent fixture extraction is retained. Copilot cases use that shared support and test both passive discovery and explicit reconnect under the same setup lifecycle. The onboarding retry regression shares the component suite’s saved-connection, authenticated-model, draft, agent-list, hire and render lifecycle fixtures. Keeping it beside the existing onboarding failures makes adoption versus duplicate hire observable under the same lifecycle; this is the concrete cohesion reason for the existing large test file. ## Model Used OpenAI Codex, based on GPT-6. The exact serving model ID and context window are not exposed in this task. Used for code changes, review and tool-assisted verification. ## Checklist - [x] I have included a thinking path that traces from project context to this change - [x] I have specified the model used (with version and capability details) - [x] I have checked ROADMAP.md and confirmed this PR does not duplicate planned core work - [x] I have searched GitHub for duplicate or related PRs and linked them above - [x] I have either (a) linked existing issues with `Fixes: #` / `Closes #` / `Refs #` OR (b) described the issue in-PR following the relevant issue template - [x] I have not referenced internal/instance-local Paperclip issues or links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip` URLs) - [x] My branch name describes the change (e.g. `docs/...`, `fix/...`) and contains no internal Paperclip ticket id or instance-derived details - [x] I have run tests locally and they pass - [x] I have added or updated tests where applicable - [x] I have updated relevant documentation to reflect my changes - [x] I have considered and documented any risks above - [ ] All Paperclip CI gates are green - [ ] Greptile is 5/5 with no open P2s, recommendations, or follow-ups - [x] I will address all Greptile and reviewer comments before requesting merge --------- Co-authored-by: Paperclip <noreply@paperclip.ing> |
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0b266bd084 |
fix(workspaces): keep source preparation locks active (#16956)
## Thinking Path > - Paperclip is the open source app people use to manage AI agents for work. > - Each task prepares its workspace before it starts the provider. > - Source preparation holds a transaction-scoped advisory lock on a dedicated database connection. > - Preparation can use other connections and the filesystem for longer than PostgreSQL allows that lock connection to stay idle. > - PostgreSQL then closes the connection and releases the lock while preparation still runs. > - This pull request reuses the workspace lock keepalive during source preparation. > - Slow preparation retains exclusion and returns its original result or error. ## Linked Issues or Issue Description **What happened?** Tasks failed during workspace preparation with `CONNECTION_CLOSED` at the configured 60-second idle transaction timeout. No provider had started. A live retry showed the source-lock transaction idle while authorization reads ran on another connection. Its advisory-lock key matched the task's source-preparation key. PostgreSQL closed that transaction at the timeout. The same defect remains on current master. A real PostgreSQL regression also shows that another preparation can enter after the timeout while the original callback still runs. **Expected behavior** Source preparation must keep its advisory lock until the callback and any pending keepalive query finish. The ordinary pool must remain usable. The original preparation result or failure must survive. **Steps to reproduce** 1. Set `idle_in_transaction_session_timeout` to one second in a disposable PostgreSQL database. 2. Call `withIsolatedRepositorySourceLock` and keep its callback active for longer than one second without querying the lock connection. 3. Try to acquire the same source lock from another operation. 4. On the old code, the second operation enters and the first transaction fails with `CONNECTION_CLOSED`. **Paperclip version or commit** Reproduced on source at `cde944ed75648adfb569e86133adc8b118b55dd6`. The repair is rebased onto `d855e550ad`. **Additional context** Refs #16340. That change introduced the keepalive for workspace copyback. This PR applies the existing helper to the source-preparation transaction. ## What Changed - Read the configured idle timeout in the same query that acquires the source lock. - Keep that dedicated connection active during source preparation with the existing helper. - Add two real PostgreSQL regressions for exclusion, company independence, a one-slot ordinary pool, nested acquisition, cleanup, and preservation of callback errors. - Update the execution contract and workspace verification maps. ## Verification - Red before the production edit: both new tests failed. A competing operation entered after the lock expired. A callback failure was replaced by `CONNECTION_CLOSED`. - Green after the repair: 86 tests passed across the source lock, source admission, keepalive, and heartbeat workspace preparation suites. - `pnpm -r typecheck`, `pnpm build`, and `node scripts/check-maps.mjs` passed on final commit `2b5000ce25`. - `git diff --check` passed. The lockfile is unchanged. - After rebase, the same 86 focused tests passed. The two source-lock tests passed again after the review cleanup change. - Live acceptance on `7df94d7a06`: a fresh local instance on macOS arm64, Node v26.4.0, native Codex `gpt-6.1-sol`, and permission mode `never`. PostgreSQL had a one-second idle transaction timeout. A temporary Git wrapper delayed repository reads by four seconds. Workspace preparation after environment acquisition took 8,297 ms. The real task completed, wrote and attached the correct line-count/SHA-256 report, reached `done` with native phase `committed`, and cleared its execution lock. The attachment matched the workspace file and survived browser reload. No dedicated lock connections remained. - The live probe initially used `gpt-5.4`, which the ChatGPT account rejected. Selecting the reported task model, `gpt-6.1-sol`, resolved that readiness failure. The local Claude CLI has no login, so no live Claude run is claimed. - Full CI passed on `2b5000ce25`: all general, chat, workspace, serialized-server, Runner, and E2E test shards, plus typecheck, build, and canary packaging. Both Greptile and Paperclip Review rated this commit 5/5 with no open findings. The Paperclip check concluded neutral; two unrelated visual checks were skipped. - The duplicate local `pnpm test:run` serial invocation was stopped with SIGINT after the complete CI test shards passed. It did not finish locally; no local full-suite pass is claimed. Local proof consists of the focused real PostgreSQL tests, typecheck, build, map checks, and the real task above. - The final commit changes test teardown only; production code matches the live acceptance commit. - Initial sandbox runs could not open test database ports or build IPC sockets. The same commands ran with local process access. The frozen install also found an existing manifest/lockfile mismatch; dependency resolution was local and the lockfile was restored. ## Risks - The lock connection sends one small query per keepalive interval. The helper derives that interval from the configured timeout and caps it at 30 seconds. It does no polling when the timeout is disabled. - The helper joins an in-flight query before the transaction ends. A slow database can therefore delay cleanup. - This change does not disable database deadlines, retry preparation, or recover an unexpected connection loss. It preserves existing admission checks and company/source lock keys. - Deployment and recovery of the reported tasks remain separate from code verification. ## Model Used OpenAI GPT-6 through Codex, with repository tools, code execution, and browser verification. The exact served model variant and context window are not exposed in this session. ## Checklist - [x] I have included a thinking path that traces from project context to this change - [x] I have specified the model used (with version and capability details) - [x] I have checked ROADMAP.md and confirmed this PR does not duplicate planned core work - [x] I have searched GitHub for duplicate or related PRs and linked them above - [x] I have either (a) linked existing issues with `Fixes: #` / `Closes #` / `Refs #` OR (b) described the issue in-PR following the relevant issue template - [x] I have not referenced internal/instance-local Paperclip issues or links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip` URLs) - [x] My branch name describes the change (e.g. `docs/...`, `fix/...`) and contains no internal Paperclip ticket id or instance-derived details - [x] I have run tests locally and they pass - [x] I have added or updated tests where applicable - [x] I have updated relevant documentation to reflect my changes - [x] I have considered and documented any risks above - [x] All Paperclip CI gates are green - [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups - [x] I will address all Greptile and reviewer comments before requesting merge --------- Co-authored-by: Paperclip <noreply@paperclip.ing> |
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d855e550ad |
Finish Copilot native runtime on current master (#15701)
## Thinking Path > - Paperclip is the open source app people use to manage AI agents for work. > - Paperclip Runner controls provider processes, permissions and task completion. > - Copilot needs its pinned distribution, native message identities and accepted semantic completion receipts. > - The release must preserve saved-token access and task lifecycle guarantees. > - This pull request will keep the current completion and recovery fixes while adding the Copilot runtime. > - The benefit is a reviewable part of the Copilot production release. ## Linked Issues or Issue Description Refs #14434. Supersedes the runtime work in #15560. This is the first PR in the stack; #15703, #15705 and #15706 follow. Related alternative adapter work: #15881. This change uses the shared Runner path. ## What Changed - Pin Copilot CLI 1.0.88 and bind the integrated implementation as profile45. - Keep native instruction, permission, receipt, process ownership and cancellation boundaries. - Preserve current master completion continuation and remote verification behavior. Other provider release identities stay unchanged. ## Verification Final reviewed source [`4f3f1af807d2ed21adabb04c2f27f4df9c4bc8d5`](https://github.com/paperclipai/paperclip/commit/4f3f1af807d2ed21adabb04c2f27f4df9c4bc8d5) includes master `cde944ed75648adfb569e86133adc8b118b55dd6`. The combined four-part PR tree matches it except for the CI-owned lockfile. Every prior public PR head remains an ancestor. Released master migrations remain unchanged; Copilot adds migration361. No unrelated provider is enabled. Copilot CLI1.0.88 and profile47 retain digest `sha256:55044aa235e88b3fe36ec8a556ee1e3382590870aab907e4462ef7d64af49cea`. The pending qualification marker is removed. The [qualification record](https://github.com/paperclipai/paperclip/blob/4f3f1af807d2ed21adabb04c2f27f4df9c4bc8d5/doc/plans/2026-10-20-copilot-qualification-v47.json) reports **20/20 Product cells,154 assertions;7/7 protocol cases,46 assertions** against frozen installed application `c2616370800f5f6df45246b0890ba35a7cd2faab`. Both environments use the exact authenticated model `gpt-5.6-luna`. Every passing Product case confirms cleanup. Automatic behavior retries are disabled. Original failed attempts remain recorded. The ordinary installed remote journey passed saved-token selection, authenticated model discovery, normal UI save/reopen, metadata-only Test, task completion, accepted receipt and an exact19-byte browser download. An open model catalog caused no new discovery requests during117seconds. Actual installed runtime smokes passed on macOS ARM64, macOS x64 under Rosetta and native Linux x64 on Daytona. Raw token browser entry was not exercised; the encrypted connection was created through the normal API. The original Daytona file attempt timed out during delayed semantic dispatch. Its precise stalled layer remains unresolved. Independent ordinary delivery and the other19 cells passed before one instrumented recheck passed8/8 with unchanged source,prompt,assertions and deadlines. No causal latency repair is claimed. After current-master reconciliation,129 connection tests,59 runner tests,72 shared eval tests and88 recovery/workspace tests pass. Migration generation/safety, unchanged profile identity and UI token gates pass. Prior required CI was green. Fresh exact-head required CI and E2E are green for all four updated heads. Each has a fresh Greptile5/5 review and zero unresolved review threads. The [final normal-package cloud build](https://github.com/paperclipai/paperclip/actions/runs/39414239704) is running. Recursive typecheck,full CI test shards,build and all8 browser shards pass. These checks cover the final source; no additional local full-suite pass is claimed. The [frozen image build](https://github.com/paperclipai/paperclip/actions/runs/39334401638) and [original normal package build](https://github.com/paperclipai/paperclip/actions/runs/39334407471) passed. The exact image is published and independently retrieved anonymously. No separate full-image scan is claimed. All18 original normal archives were scanned with zero selected credentials. Docker builds run in the cloud. Provider USD remains unknown and GitHub-attributed. **Qualification is complete on the recorded frozen build. Normal protected merge, automatic master canary publication and final shipped-package local/Daytona canaries remain. No production deployment is claimed.** ## Risks Shared Runner behavior can affect active tasks. Exact profile admission rejects stale runtime identities. The final campaign and installed canaries remain release gates. ## Model Used OpenAI Codex, based on GPT-6. The exact serving model ID and context window are not exposed in this task. Used for code changes, review and tool-assisted verification. ## Checklist - [x] I have included a thinking path that traces from project context to this change - [x] I have specified the model used (with version and capability details) - [x] I have checked ROADMAP.md and confirmed this PR does not duplicate planned core work - [x] I have searched GitHub for duplicate or related PRs and linked them above - [x] I have either (a) linked existing issues with `Fixes: #` / `Closes #` / `Refs #` OR (b) described the issue in-PR following the relevant issue template - [x] I have not referenced internal/instance-local Paperclip issues or links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip` URLs) - [x] My branch name describes the change (e.g. `docs/...`, `fix/...`) and contains no internal Paperclip ticket id or instance-derived details - [ ] I have run tests locally and they pass - [x] I have added or updated tests where applicable - [x] I have updated relevant documentation to reflect my changes - [x] I have considered and documented any risks above - [x] All Paperclip CI gates are green - [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups - [x] I will address all Greptile and reviewer comments before requesting merge --------- Co-authored-by: Paperclip <noreply@paperclip.ing> |
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fc0d390d98 |
fix: enforce Cloud-enabled features on every managed stack (#16953)
## Thinking Path > - Paperclip is the open source app people use to manage AI agents for work. > - Cloud sets managed feature values for each tenant stack. > - Staging lets admins change experimental features. > - The staging exception also let old tenant false values override Cloud true values. > - This could disable required features such as isolated workspaces. > - This pull request keeps every Cloud-enabled feature on and rejects attempts to disable it. > - The same rule applies to staging, production, and managed stacks without a hostname. ## Linked Issues or Issue Description Refs: #16876 **What happened?** The staging override added in #16876 treats managed true values as editable defaults. A stored tenant false value can disable a feature that Cloud enables. Settings writes also accept attempts to disable Cloud-enabled features. **Expected behavior** If Cloud sets a feature to true, the tenant reads true and cannot turn it off. This applies to every managed stack. Staging can still change allowed experiments that Cloud has not enabled. **Steps to reproduce** 1. Set a managed staging primary hostname and enable isolated workspaces in `PAPERCLIP_MANAGED_CONFIG`. 2. Start with `enableIsolatedWorkspaces: false` in the tenant settings row. 3. Read `/api/instance/settings/experimental`. Before this fix, staging returns false. 4. Try to PATCH that flag to false. After this fix, the API returns 403 without saving, and reads return true with managed control metadata. **Paperclip version or commit** Reproduced against master at `cde944ed75648adfb569e86133adc8b118b55dd6`. ## What Changed - Keep managed true values in the staging read overlay. They override old tenant values and lock the existing UI controls. - Reject attempts to set any Cloud-enabled feature to false before writing settings. - Cover every managed feature in service tests across staging, production, and an absent hostname. Add real-service HTTP tests for isolation on staging and production. - Update operator documentation and the feature and access maps. ## Verification - Confirmed the new service regression fails before the fix: staging returns stored false, and writes can attempt to disable enabled flags. - Passed all six focused settings suites: 168 tests. Passed the final route and overlay suites after adding the HTTP regression: 109 tests. - Passed existing experimental settings UI tests: 54 tests. These cover the existing managed-control behavior. - Passed `node scripts/check-maps.mjs` and `git diff --check`. - Passed `pnpm -r typecheck` and `pnpm build`. The first typecheck used an install that did not honor locked versions and hit an unrelated `@pierre/diffs` API mismatch. Reinstalling from the lockfile resolved it; no lockfile changes are included. - Full CI passed on `f43136812a92ec838a24f0c423270e4fbd997c28`: 55 successful checks, one neutral review check, and two expected skips. This includes typecheck, build, general and serialized tests, runner checks, and E2E shards. [CI run](https://github.com/paperclipai/paperclip/actions/runs/39411907756). - The duplicate local `pnpm test:run` was stopped after the complete CI matrix passed. It is not counted as a completed local full-suite pass. - Greptile reviewed `f43136812a92ec838a24f0c423270e4fbd997c28`: 5/5 with no outstanding findings. The only finding on the first review was the repository rule against new code comments; those comments were removed. ## Risks - Staging users can no longer disable a feature that Cloud enables. This is the intended behavior. - Clients that send a stale full settings form containing false for a Cloud-enabled feature receive 403 and must reload. - No database migration is needed. Stored false values remain in the database, but cannot override an active Cloud true value. - Cloud-disabled staging experiments remain editable. Production restrictions and self-hosted settings remain unchanged. ## Model Used - OpenAI Codex, `gpt-6.1-sol`, with reasoning, repository tools, and test execution. The context window size is not exposed in this session. ## Checklist - [x] I have included a thinking path that traces from project context to this change - [x] I have specified the model used (with version and capability details) - [x] I have checked ROADMAP.md and confirmed this PR does not duplicate planned core work - [x] I have searched GitHub for duplicate or related PRs and linked them above - [x] I have either (a) linked existing issues with `Fixes: #` / `Closes #` / `Refs #` OR (b) described the issue in-PR following the relevant issue template - [x] I have not referenced internal/instance-local Paperclip issues or links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip` URLs) - [x] My branch name describes the change (e.g. `docs/...`, `fix/...`) and contains no internal Paperclip ticket id or instance-derived details - [x] I have run tests locally and they pass - [x] I have added or updated tests where applicable - [x] I have updated relevant documentation to reflect my changes - [x] I have considered and documented any risks above - [x] All Paperclip CI gates are green - [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups - [x] I will address all Greptile and reviewer comments before requesting merge --------- Co-authored-by: Paperclip <noreply@paperclip.ing> |
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cde944ed75 |
fix(workspaces): keep retained readers valid after cross-task wake coalescing (#16928)
## Thinking Path
> - Paperclip is the open source app people use to manage AI agents for
work.
> - Before a run starts, repository admission checks every retained
reader of the physical repository root and of overlapping roots.
> - Each retained reader records the run, task, agent and responsible
user that the server admitted.
> - A wake for another task can coalesce into a running run. The merge
replaces `contextSnapshot.issueId` and `taskId` with the other task.
> - The retained-reader check used that mutable context task before the
run's immutable task binding. The old reader then looked like a changed
identity.
> - When a later run admits an overlapping root, such as a shared
project checkout that contains earlier task worktrees, every admission
on that root fails. The root stays blocked and no operator action can
repair it.
> - This pull request accepts a retained reader when its task matches
the run's immutable binding or its current context task.
> - The benefit is that legitimate wake coalescing no longer blocks a
shared root, and missing or truly mismatched identities still fail
closed.
## Linked Issues or Issue Description
Refs #16717 and #16832. Those cover retained readers whose run, agent or
task was deleted. This pull request covers a different cause: every
identity still exists, but wake coalescing changed the run's context
task. #16832 keeps identity mismatches fail-closed, so it does not fix
this case. Both pull requests change the same condition in
`execution-workspace-root-readers.ts`. The pull request that merges
second must rebase.
**What happened?**
A scheduled routine run failed in setup with `Repository root retains a
reader whose identity is no longer available` (403). Every later run of
the routine failed in the same way, for eight hours in a row. Two
earlier runs of the same agent were the retained readers. Each run
started for its own task and recorded its reader. About 10 to 16 minutes
later, a monitor wake for a different task coalesced into the running
run with reason `issue_execution_same_name`.
`mergeCoalescedContextSnapshot` set `contextSnapshot.issueId` to the
other task. `heartbeat_runs.issue_id` stayed on the original task,
because the `heartbeat_runs_set_scope_kind` trigger makes the binding
immutable. The readers were on per-task worktree roots, so nothing
failed at first. Then the routine's tasks changed to the shared project
checkout. That root contains those worktrees, so admission loaded the
two readers, compared them with the changed context task, and threw.
**Expected behavior**
A retained reader stays valid while its run, agent, task and responsible
user still exist and still match what the server admitted. A context
change from wake coalescing must not make the reader unavailable. A
reader whose task matches neither the run's binding nor its context must
still be rejected.
**Steps to reproduce**
1. Admit run R for task A on a nested root, for example
`<checkout>/.paperclip/worktrees/a`.
2. Coalesce a wake for task B into R. `contextSnapshot.issueId` becomes
B. `heartbeat_runs.issue_id` stays A.
3. Admit or publish another task on the parent root `<checkout>`.
4. Observe the 403 `Repository root retains a reader whose identity is
no longer available`. Every later admission on that root fails in the
same way.
**Paperclip version or commit**
Reproduced on `master` at
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b448710986 |
fix: derive startup warmth from per-layer reuse evidence (#16908)
## Thinking Path > - Paperclip helps people manage AI agents and inspect their work. > - Agent startup can reuse a lease, workspace, Runner, process, or session. > - A session ID can remain the same when other resources are new. > - The old cold/warm label did not show these separate decisions. > - This pull request records closed reuse receipts and derives labels from them. > - Reports now show partial reuse and missing evidence. ## Linked Issues or Issue Description Refs #11685. That issue tracks a specific ACPX fingerprint repair. This change records reuse evidence across startup resources. It does not repeat that repair. **What existing behavior does this improve?** Startup labels in the operator trace and Product E2E reports. **Current behavior** A cached runtime or a continuous session can suggest a warm startup even when workspace staging or provider launch work occurs. **Proposed behavior** Record each layer's reuse decision and a closed reason. Record observed provider launch counts. Use `warm`, `cold`, `partial_reuse`, or `unknown` from those receipts. Keep old runs unknown when they have no receipts. ## What Changed - Add local run-log receipts for the lease, workspace, Runner, provider process, and provider session. - Count physical ACPX launches, including respawns. Preserve the reason for a new process. - Reuse native workspace adoption and session lifecycle evidence. Keep native and bridged remote provider-process reuse and launch counts unknown where physical evidence is absent. - Show the per-run summary in retained results and the dashboard. Keep missing legacy values explicit. - Set the legacy trace boolean only for fully evidenced cold or warm startup. Keep the operator OTLP gate. Add no first-party Telemetry. - Test full reuse, workspace invalidation, two direct provider launches with session continuity, and report generation. - Start the final diagnostic write without waiting for persistence. Keep lease cleanup independent of a stalled event sink. - Keep remote provider evidence unknown after runtime setup fails or the host relay starts twice. - Align a stale Pi support-test expectation with current master profile 28 and its suite fingerprint. Keep the qualification rules unchanged. ## Verification - Passed: all 319 runtime, startup-timing, reuse-summary, and native workspace-history tests. Disposable local Git tests used the native Git binary. - Passed on the current commit: all 2,768 Runner E2E support tests across 128 files. This includes report and history tests for generated HTML and normalized JSON. - Passed: `pnpm --filter @paperclipai/adapter-utils typecheck`. - Passed on `df60f8dbdbfcb6d80c84cd3bf563f8d58b2f9f03`: all PR CI gates, including repository typecheck and build, all test shards, and browser tests. Both automated reviews are 5/5. GitHub reports 55 successful checks, one neutral review, and two skipped Storybook checks. - The first server shard run failed because an unchanged workspace-runtime fixture did not accept health connections within 10 seconds. Its isolated local test and the single failed-jobs rerun both pass. This establishes recovery; the cause of the first timeout remains unknown. - Passed in the hosted source run on this exact commit: recursive typecheck, token gates, the large Runner E2E typecheck, Runner E2E unit tests, and build. The retained `source.txt` matches this PR head. - The extra unsharded `pnpm test:run` reached its 60-minute limit (exit 124). It has no complete verdict. The broad workflow therefore reports failure. No assertion-failure marker appears in the retained partial log. Full-suite acceptance uses the passing canonical PR CI partitions. A read-only inventory check found no gaps across 1,023 general server files, 161 serialized suites, and 20 workspace projects. The separate chat/native Runner lanes cover the excluded server files. No tests or timeouts were weakened. The local environment has 4 GiB of memory. Use CI for the large Runner E2E typecheck. - The initial report tests failed because the harness could not resolve package imports from the repository root. Relative source imports fixed that failure. - The first broad local run had timeouts from the environment Git bridge. Native Git resolves the ancestry timeout and all runtime tests pass. The added report fixture lacked its required screenshot; the corrected report tests pass. A stale master assertion expected Pi profile 27, while the generated profile is 28. Updated its expectation and exact suite fingerprint; all 78 targeted support tests pass. The clean full support run passes all 2,768 tests. - The three review regression cases failed before repair. They showed remote counts of zero and two, and a completed run that waited for the final diagnostic sink. They now pass. The stalled-sink case keeps persistence pending while the run returns, both bridge stops run once, and the staging lock map becomes empty. - Hosted evidence for this commit: [source verification](https://github.com/paperclipai/paperclip/actions/runs/39335475416), [retained command logs and status table](https://github.com/paperclipai/paperclip/actions/runs/39335475416/artifacts/12228829282). All listed commands exited zero except the incomplete unsharded test command described above. - The physical-launch test drives the executor's spawn callback twice. The native workspace test uses real Git repositories and verifies reuse and invalidation. These are deterministic tests, not a paid provider qualification campaign. ## Risks - Consumers must handle `partial_reuse` and `unknown`. Partial evidence no longer produces a legacy cold/warm boolean. - Native and remote bridged provider process evidence is still unavailable on some paths. The report shows unknown values for those paths. - Receipt emission is best effort. Missing receipts reduce confidence in a label and must not change execution or settlement. - No schema migration, first-party Telemetry event, or endpoint default changes are included. ## Model Used OpenAI Codex, based on GPT-6, used reasoning, repository tools, and code execution. The exact provider model ID and context window are not exposed to this session. The existing implementation checkpoint was preserved from the earlier agent run. ## Checklist - [x] I have included a thinking path that traces from project context to this change - [x] I have specified the model used (with version and capability details) - [x] I have checked ROADMAP.md and confirmed this PR does not duplicate planned core work - [x] I have searched GitHub for duplicate or related PRs and linked them above - [x] I have either (a) linked existing issues with `Fixes: #` / `Closes #` / `Refs #` OR (b) described the issue in-PR following the relevant issue template - [x] I have not referenced internal/instance-local Paperclip issues or links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip` URLs) - [x] My branch name describes the change (e.g. `docs/...`, `fix/...`) and contains no internal Paperclip ticket id or instance-derived details - [x] I have run tests locally and they pass - [x] I have added or updated tests where applicable - [x] I have updated relevant documentation to reflect my changes - [x] I have considered and documented any risks above - [x] All Paperclip CI gates are green - [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups - [x] I will address all Greptile and reviewer comments before requesting merge --------- Co-authored-by: Paperclip <noreply@paperclip.ing> Co-authored-by: devinfoley <139239+devinfoley@users.noreply.github.com> |
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bc091f0a21 |
fix(recovery): recover retained workspaces before saved messages (#16906)
## Thinking Path > - Paperclip is the open source app people use to manage AI agents for work. > - A stopped run can leave useful files in its original sandbox. > - The server keeps that sandbox when it cannot confirm file copyback. > - The task can then save new user input but offers no safe way to recover the files. > - A retry of the old agent turn can repeat work that already finished. > - This pull request recovers files through the existing workspace owner and delivers only saved human input. > - The user can recover a task without certifying infrastructure facts or losing completed work. ## Linked Issues or Issue Description Refs #16883 and #16835 for publication receipts and verified process termination. Related: #16478 clears stale holds after copyback already succeeded. This change performs the missing export and records its proof. #16901 manages the main GitHub response comment and does not perform workspace repair. **What happened?** A failed run retained its workspace. A later user message stayed saved behind a file-repair hold. The task asked the user to verify process termination and file recovery but offered no repair control. Sending a message could show an optimistic Working state and move the task to Todo before admission succeeded. **Expected behavior** The harness should recover the original files when it can prove ownership and termination. It should preserve newer edits and completed operations. Only waiting user input may start another turn. Missing evidence must keep the source held with a specific explanation. **Steps to reproduce** 1. Interrupt a sandbox run before workspace finalization succeeds. 2. Retain its exact allocation and save a user follow-up. 3. Observe the file-repair hold and missing end-user repair path. ## What Changed - Add source-bound background recovery for native and legacy runs. An accepted native result is not required. - Share the physical copyback lock and durable owner. Resume only the exact stopped allocation, export files, verify persistence and obtain a fresh stop receipt. - Persist retry limits and idempotent requests on the existing recovery record. Limit each server to two background exports. Add an indexed candidate scan and a separate cleanup obligation. - Add a task-editor recovery endpoint. Deny agents and viewers. Reject caller-supplied stop or repair claims. - Deliver waiting human input once through ordinary admission. Preserve pause, approval, budget and assignment gates. Require historical conversational-adapter evidence for legacy-to-Runner continuation. - Include exact GitHub publication receipts in continuation context. Preserve unknown effects and the original failed run. - Show observed recovery progress, a transient-failure retry action and specific service blockers. Keep saved messages visible. Suppress false startup feedback and implicit Todo promotion behind a file hold. Hide unavailable workspace links. - Update execution semantics, capability maps and production-component stories. ## Verification - Red: the original read model failed the new recovery-progress assertion; the other 23 checks in that file passed. - Passed: recovery regressions with 28 cases with real PostgreSQL, files, tar and Git operations. Lifecycle provider calls are controlled test boundaries. Coverage includes native/legacy export, concurrent owners, rollback after export, interrupted archive export with a new database connection, lost replies, historical discovery, durable retry limits, separate cleanup and saved-input delivery. The actual candidate query uses its partial index with 3,000 unrelated history rows. A first automatic repair can bind verified old-controller stop proof without an accepted native result. Review also reproduced and fixed export-only continuation and cleanup lost after a committed repair. Cleanup remains discoverable without waiting input and after task reconciliation. - Passed: two GitHub integration cases verify that continuation context carries the existing publication receipt and does not write another response. Company and task boundaries are checked. - Passed: 293 continuation, workspace-sync, platform-receipt and OpenAPI checks. After file repair, actual dispatch retains pause, cancellation, approval, real budget-policy and assignment gates. - Passed: 174 route checks, including editor admission, agent/viewer denial and rejection of fabricated repair claims. - Passed: 351 task detail, workspace properties and comment-reopen checks after updating the new read boundaries and asynchronous workspace-link expectations. Two new route cases keep held tasks Blocked when a comment is saved. - Passed: 265 task-thread and recovery-notice checks. The broader continuation suite also passed; its new legacy migration case first exposed a gap that the focused recovery suite now covers. - Passed after rebase: `pnpm -r typecheck` and `pnpm build`. The later master merge adds an unrelated permission migration; recovery migration generation and safety checks passed after the merge. - Passed: token gates, module boundaries, map structure and migration checks. The recovery index is migration 0360 after current master. - Browser: inspected the production recovery component and its retry-to-queued transition with fixture data. The first dev dependency load failed; a reload after optimization resolved it. This is UI evidence, not a live provider recovery claim. - Every test shard passed on final commit `bbbc09efb4`. The older local `pnpm test:run` was stopped after the complete CI test matrix passed. Local full typecheck and production build passed. The first CI build compiled and booted, then lost its runner during the clean public npm-install check. An isolated retry passed the build, production boot and clean public npm-install verification. - Greptile reviewed final commit `bbbc09efb4` at 5/5. All review threads are resolved. - The change is not deployed. Hosted recovery remains unverified until the served revision includes this change. ## Risks - Recovery crosses process, provider and persistence boundaries. Missing or mismatched ownership, stop, descriptor or file evidence keeps the hold. It never selects a replacement allocation or silently starts over. - File recovery does not certify external action outcomes or authorize replay. New input still uses normal execution admission. - Historical sources without sufficient durable evidence can remain blocked. Destructive reconstruction stays separate. - The index migration is idempotent. It changes no task data. Snapshot pruning follows repository policy. ## Model Used OpenAI Codex, `gpt-6.1-sol`, with code execution and browser tools. `gpt-6-astra` assisted earlier investigation. The runtime does not expose the context-window size. ## Checklist - [x] I have included a thinking path that traces from project context to this change - [x] I have specified the model used (with version and capability details) - [x] I have checked ROADMAP.md and confirmed this PR does not duplicate planned core work - [x] I have searched GitHub for duplicate or related PRs and linked them above - [x] I have either (a) linked existing issues with `Fixes: #` / `Closes #` / `Refs #` OR (b) described the issue in-PR following the relevant issue template - [x] I have not referenced internal/instance-local Paperclip issues or links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip` URLs) - [x] My branch name describes the change (e.g. `docs/...`, `fix/...`) and contains no internal Paperclip ticket id or instance-derived details - [x] I have run tests locally and they pass - [x] I have added or updated tests where applicable - [x] I have updated relevant documentation to reflect my changes - [x] I have considered and documented any risks above - [x] All Paperclip CI gates are green - [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups - [x] I will address all Greptile and reviewer comments before requesting merge --------- Co-authored-by: Paperclip <noreply@paperclip.ing> |