306 Commits

Include renames

Author	SHA1	Message	Date
Devin FoleyandPaperclip	94819b6ded	fix(recovery): preserve live heartbeat preparation ownership (#17838) ... ## Thinking Path > - Paperclip is the open source app people use to manage AI agents for work. > - Heartbeat prepares each run before it starts the native provider. > - Startup recovery can run while that preparation is still active. > - The native input and coordinator exist before workspace synchronization saves its descriptor. > - Recovery checked the later native executor registry but missed the earlier heartbeat execution registry. > - It could claim the live run and dispatch a second executor against incomplete workspace state. > - This change gives the recovery claim the existing live heartbeat registry and checks it before changing ownership. ## Linked Issues or Issue Description **What happened?** Startup recovery can claim a native run that the same server is still preparing. The second execution reads the admitted native input before workspace synchronization has saved its descriptor. It fails with `native_workspace_sync_descriptor_binding_missing`. The original preparation then finds a failed run and cannot start the provider. **Expected behavior** Leave live preparation with its current executor. Do not change its native coordinator or dispatch another executor. An inactive run must still pass the existing recovery checks. **Steps to reproduce** 1. Start heartbeat runtime selection for a remote sandbox. 2. Hold workspace synchronization after native input and coordinator persistence. 3. Run native startup recovery with the heartbeat execution still active. 4. Observe an unintended `bootstrap_incomplete` claim and a second execution. Refs #17439 for broader remote controller recovery. This change repairs the current heartbeat startup race. It does not add checkpoint storage or remote adoption. A separate diagnostics correction is in #17837. ## What Changed - Pass the existing heartbeat live execution registry to native recovery claims. - Check the current registry after locking the run and before any takeover or coordinator change. - Return the existing waiting disposition for live preparation. Keep workspace descriptor validation unchanged. - Add a PostgreSQL regression at the real runtime-selection boundary and an assembled heartbeat recovery regression with the real claim service. - Document the preparation interval and its recovery behavior. ## Verification - Red: the new runtime-selection test observed an unintended bootstrap claim on the original code. The heartbeat regression also failed because recovery dispatched the live run. - Green on current head `88bec51f10d61eb851eec849e82a80bb198555c7`: all 144 runtime-selection, heartbeat recovery, workspace-preparation and restart-policy tests pass. - These cases check an unchanged coordinator, no duplicate recovery dispatch, a running source run, and normal recovery after the execution leaves the registry. - The full native restart integration file passes all 22 available cases. Nine real-runner process cases are skipped because local Runner test binaries were removed to recover disk space. The passing cases include remote startup, old preparation fencing, ownership conflicts, Stop, and concurrent recovery. - Direct full server TypeScript check passes: `pnpm exec tsc --noEmit -p server/tsconfig.json`. Hosted CI passes on this head, including full test partitions, typecheck, build, native Runner checks, serialized suites, browser shards, canary and both aggregates. Apex is 5/5 with no actionable findings. The current head has 54 successful checks, two expected skips and successful Snyk status. - `git diff --check`, module boundary checks, and map checks pass. - A wider local safety run stopped with PostgreSQL error 53100 and ENOSPC after 64 tests passed. Recursive typecheck also stopped with ENOSPC. These attempts did not pass. Generated files in this worktree were removed to free space. The full local test suite and build have not been run for this change; hosted CI must supply those results. - Live evidence: a production startup recovery claimed a new run during outward workspace staging. The second preparation failed before provider startup. Its exact sandbox was later destroyed with successful cleanup. The patch is not deployed. A later audited retry on the existing deployment completed successfully and saved the requested answer once. An audited operator repair through the normal issue service completed the final user assignment in Review after the agent API handoff failed. This acceptance verifies recovered work, not deployment of the new guard. ## Risks - A live heartbeat remains responsible for its own completion and cleanup. Recovery must not compete with it. The registry is process-local; existing durable ownership checks still govern other controllers. - An executor that is still active remains protected until its cleanup removes its registry entry. This adds no timer, polling loop, schema or credential change. - Missing or corrupt workspace descriptors still fail closed. This change does not authorize replay of unknown provider actions. ## Model Used OpenAI Codex, GPT-6 family, with reasoning, source inspection, tool use and code execution. The runtime does not expose the exact serving model ID or context window size. ## Checklist - [x] I have included a thinking path that traces from project context to this change - [x] I have specified the model used (with version and capability details) - [x] I have checked ROADMAP.md and confirmed this PR does not duplicate planned core work - [x] I have searched GitHub for duplicate or related PRs and linked them above - [x] I have either (a) linked existing issues with `Fixes: #` / `Closes #` / `Refs #` OR (b) described the issue in-PR following the relevant issue template - [x] I have not referenced internal/instance-local Paperclip issues or links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip` URLs) - [x] My branch name describes the change (e.g. `docs/...`, `fix/...`) and contains no internal Paperclip ticket id or instance-derived details - [x] I have run tests locally and they pass - [x] I have added or updated tests where applicable - [x] I have updated relevant documentation to reflect my changes - [x] I have considered and documented any risks above - [x] All Paperclip CI gates are green - [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups - [x] I will address all Greptile and reviewer comments before requesting merge Co-authored-by: Paperclip <noreply@paperclip.ing>	2026-10-26 21:34:15 -07:00
3 people	4da876ab0b	fix(native): always advertise run-scoped readers to provider threads (#16995) ... ## Thinking Path > - Paperclip is the open source app people use to manage AI agents for work. > - Native runs use a Paperclip tool authority to declare tools to the provider thread. Codex runs through runnerd. > - An external-chat wake with a truncated comment batch requires the agent to call `read_current_wake_comments`. A terminal fence fails the run if the agent did not read every bound comment. > - Codex `thread/resume` has no `dynamicTools` parameter. A resumed thread keeps the tool catalog from its first `thread/start`. > - The tool authority declared `read_current_wake_comments` and `read_chat_attachment` only when the current run had a binding. The tool-contract fingerprint already said that both tools are "always advertised", so the code and the contract did not agree. > - When a truncated chat wake resumed a thread that started on an ordinary turn, the agent could not see the reader. The agent blocked, and the fence failed the run with `native_current_wake_comments_unread`. The task then stayed blocked for the board. > - This pull request declares both readers on every turn and rotates threads that started with the old catalog. > - The benefit: truncated GitHub, Slack, and other chat wakes can read their full comment batch on resumed threads. They no longer fail at the fence. ## Linked Issues or Issue Description No public issue exists. This is the bug description, in the fields of `bug_report.yml`. **What happened?** A native Codex run got a GitHub chat wake with a truncated comment batch. The prompt told the agent to call `read_current_wake_comments`. The agent searched for the tool and did not find it. It reported a block (`required_wake_reader_unavailable`). The server sent the reader in the run's authorized tool list, but the provider thread had resumed. The fence then failed the run with `native_current_wake_comments_unread`, and the task became blocked. This happened 6 times on staging for the same task. **Expected behavior** A resumed thread can call `read_current_wake_comments` and `read_chat_attachment` on any turn that has a binding. The run then completes normally. **Steps to reproduce** 1. Start a native Codex session on a task with an ordinary wake. Do not use a truncated chat wake. 2. Send an external-chat message that makes the wake comment batch truncated (`fallbackFetchNeeded: true`). 3. The run resumes the same Codex thread. The model cannot see `read_current_wake_comments`. The run fails with `native_current_wake_comments_unread`. **Paperclip version or commit** Hosted staging release `fc0d390d`. The code is the same on `master` at `3bbc210`. **Deployment mode** Hosted (staging). The native runner uses the `codex_app_server` backend through runnerd in an external sandbox. **Agent adapter(s) involved** Codex (native `paperclip_runner`). Related history: the existing retained-fingerprint table already lists a "conditional current-wake reader" rotation. This change fixes a regression of that contract. I searched open and closed PRs for `current_wake_comments` and "wake comments" and found no duplicate fix. ## What Changed - `PaperclipRunnerToolAuthority.definitions()` now always declares `read_current_wake_comments` and `read_chat_attachment`. Execution stays fail-closed: without the server-verified binding or scope, a call still fails with `paperclip_runner_tool_not_advertised` or `paperclip_runner_chat_attachment_read_scope_unavailable`. - The native tool-contract fingerprint goes from v17 to v18, with the two policy values set to `.v2`. Checkpoints from deployed v17 threads, which may lack the readers, start a fresh provider thread one time with full task context. - New regression test: the catalog for an ordinary turn is equal to the catalog for a truncated chat turn, and it contains both readers. - New resume tests: the deployed v17 local and remote fingerprints do not rebind. The existing test that asserted conditional advertisement now asserts the stable catalog and the fail-closed execution. ## Verification - Red before the fix: `npx vitest run src/services/native-runtime/paperclip-runner-tool-authority.test.ts -t "advertises only real bindings|keeps run-scoped reader declarations stable"` had 2 failures. The unbound catalog had 48 tools and did not include either reader. - Green after the fix: `paperclip-runner-tool-authority.test.ts`, `native-session-resume.test.ts`, `current-wake-comments.test.ts`, `chat-attachment-read.test.ts`, `native-execution-input.test.ts`, and `file-delivery-bridges.test.ts` all pass. - `native-session-executor.test.ts`: 764 pass and 1 fails. The failure (`compares export process compatibility … (changed: false)`, `db.transaction is not a function`) also happens on unchanged `main`, so this change did not cause it. - Consequential assumption: Codex does not refresh dynamic tools on resume. Evidence: `codex app-server generate-json-schema` for codex-cli 0.160.0 shows `ThreadStartParams.dynamicTools`, but `ThreadResumeParams` has no `dynamicTools` field. The failed staging run also showed it: the server listed `read_current_wake_comments` as authorized, but the model's tool search returned no match after `thread/resume`. - Not run locally: the server `tsc --noEmit` step (the sandbox has a 4 GB memory limit and the process was killed) and `dot-runner.test.ts` (`cargo` is not installed). CI runs both. - Not run: a live end-to-end chat wake against a real Codex provider. That needs a staging deployment. ## Risks - The fingerprint bump makes every native session that resumes from a v17 checkpoint start a fresh provider thread one time. Paperclip rebuilds the full task context, but the provider-side conversation history is not carried over. This is the same tradeoff as earlier fingerprint bumps. - Two more tool declarations use a small part of the Codex dynamic-tool budget. The assigned-MCP fit check already includes these definitions. - Follow-up, not in this PR: the native Codex driver reports `toolRefreshOnResume: true`, and the runnerd fake app server accepts `dynamicTools` on `thread/resume`. Real codex-cli 0.160.0 has no such field. Connection-tool continuations that depend on resume refresh need a separate check. ## Model Used - Claude Opus 5.5 (`claude-opus-5-5`) from Anthropic, running as a Paperclip agent with tool use (shell, file edit, and test execution). ## Checklist - [x] I have included a thinking path that traces from project context to this change - [x] I have specified the model used (with version and capability details) - [x] I have checked ROADMAP.md and confirmed this PR does not duplicate planned core work - [x] I have searched GitHub for duplicate or related PRs and linked them above - [x] I have either (a) linked existing issues with `Fixes: #` / `Closes #` / `Refs #` OR (b) described the issue in-PR following the relevant issue template - [x] I have not referenced internal/instance-local Paperclip issues or links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip` URLs) - [x] My branch name describes the change (e.g. `docs/...`, `fix/...`) and contains no internal Paperclip ticket id or instance-derived details - [x] I have run tests locally and they pass - [x] I have added or updated tests where applicable - [x] I have updated relevant documentation to reflect my changes - [x] I have considered and documented any risks above - [ ] All Paperclip CI gates are green - [ ] Greptile is 5/5 with no open P2s, recommendations, or follow-ups - [x] I will address all Greptile and reviewer comments before requesting merge 🤖 Generated with [Claude Code](https://claude.com/claude-code) Co-authored-by: devinfoley <139239+devinfoley@users.noreply.github.com> Co-authored-by: Claude Opus 5.5 <noreply@anthropic.com>	2026-10-26 21:08:00 -07:00
Nicky Leach	ea727dc3c2	Preserve plugin session continuity through warm execution and checkpoint recovery (#17820)	2026-10-26 20:25:10 -07:00
DottaandPaperclip	208a093d19	fix(chat): preserve resumed review waits and retry newer saved input (#17725) ... <!-- entire-trail-link-start --> https://entire.com/gh/paperclipai/-/trails/36/changes/paperclip/36 <!-- entire-trail-link-end --> ## Thinking Path > - Paperclip is the open source app people use to manage AI agents for work. > - GitHub review agents publish findings and wait for an authorized reply or head change. > - Review tools could retain the requester after resume while completion lost that same wait proof. > - A yielded report could then queue its own continuation or repeat a missing-wait error. > - Ordinary Retry could also select an older failed turn while a newer saved request had no admission. > - This change shares the existing authority proofs and canonical admission owners. > - Current access, publication, execution and budget gates remain required. ## Linked Issues or Issue Description Refs #17318. Builds on the canonical saved-input retry owner in #17733. Related #16550 covers deferred legacy comments after ownership waits. The separate recovery repair in #17724 owns the cleanup-to-saved-input handoff; this PR does not add a second admission owner. A resumed review could publish an assessment, then turn its `response_wake` into an immediate `issue_status_changed` wake. A provider that omitted its continuation could instead repeat a completion error. A newer linked-human message saved during a budget hold could also remain unstarted because Retry selected the older failed source. ## What Changed - Resolve passive review waits through the accepted requester ledger used by GitHub tools. Require the latest reviewed head, exact company, task, agent, repository and processed publication under current access. - Fill omitted/null yielded continuation from that server proof. Permit an inherited normal tree resume only through its accepted parent identity. Permit an ordinary follow-up only after this run has a processed useful reply linked to its exact inbound message. Reject acknowledgements, partial assessments, pending or uncertain writes as that reply proof. - Recheck the same run/review/head/source proof during feedback, finalization and final status commit. Preserve explicit malformed-input rejection and Done policy. Add no monitor permission or publication grant. - Keep heartbeat and publication projections narrow. Preserve both published Copilot v62 identities and generate source-bound v63 from the pinned merged base. No v63 live qualification is claimed. - Certify the structured isolated-directory binding failure only at its pre-allocation boundary and only through canonical task Retry. Other workspace validation reasons and unknown effects remain denied. - Route Retry to eligible newer saved input through the existing canonical owner. Preserve the old result and skipped receipt. Require current principal, source, App, runtime fence, budget, native ownership and exact cleanup proof. - Recover absent historical App metadata only through an earlier trusted processed response receipt and an immutable non-null endpoint claim. Explicit malformed or conflicting metadata stays denied. - Revalidate execution through the exact claimed wake, coalesced task Retry and resolved user-continuation receipt after admission. A second normal Retry can recover the exact never-started authorization failure with unchanged saved input. Require empty execution evidence, exact diagnostics and no allocated or active executor. - Explain when a recorded result prevents exact replay. Ordinary board Retry directs a new task message to continue from saved work. Inherited requester identity alone never grants replay. - Keep accepted board-message preparation failures with the canonical task Retry owner. Certify the exact unchanged comment, original user wake, accepted same-user identity and absence of provider execution. Pin that source, recheck it at admission, and bind identity initialization to the coalesced intent and exact claimed successor receipt. Uncertifiable sources retain an actionable fresh-message refusal. - Return safe named authority categories for board Retry refusals. Update execution documentation and capability maps. Add no schema or polling loop. ## Verification - A fresh external review request exposed a separate isolated-directory preparation failure before allocation. Its first normal Retry saved an intent but admitted no successor. This follow-up certifies only that exact structured preparation boundary through the existing canonical Retry owner, with trusted failed settlement and no executor, lease, result or output. A real HTTP/queue regression reproduces the missing successor before the repair. Twenty-three current-source safety cases and the final 98-case Retry/HTTP group pass, including a fresh click after a denied intent, source revocation, accepted results and the older direct API remaining denied. The warning case uses actual configuration preparation and production event append; unknown warning shape or provider provenance stays denied. Full workspace typecheck, build, maps and diff checks pass. Renewed hosted normal Retry now succeeds on the final combined source: it preserves the exact saved request and linked requester, starts one native successor in a fresh attempt workspace, publishes the current-head 2/5 assessment and commits In review with passive response wake. - A later hosted normal Retry published a low-score assessment but lost its accepted source identity because the previous attempt failed before identity initialization. It repeated continuation errors, then submitted Done. This is failed acceptance, not a successful qualification. The initializer now retains the exact source only after execution-time failed-chat Retry authorization; generic Retry and Done policy are unchanged. A real queue/initializer regression fails with a null source on the previous code and passes with the newer saved source. Two real database completion cases verify that source yields the authoritative wait and commits In review. Renewed hosted normal Retry now retains the accepted source and exposes the authoritative current-review wait. It completed after two semantic feedback corrections (wrong contract revision, then wrong criterion IDs); the correct contract was present in emitted input. The third finish was accepted and committed In review, with no missing-wait loop or Done escalation. - Repeated board-message preparation failures now walk their canonical intent, failed dispatch and accepted parent identity, rechecking each contained predecessor. A production queue regression fails the second ordinary HTTP Retry before the repair and passes afterward. Changed source, contradictory execution evidence and cyclic receipts remain denied; traversal stops after twenty links. - New inherited omission cases failed before the repair. The final full PostgreSQL 18 wait/status suite passes **252 tests** under Node 24.22. It covers omitted/null input, malformed-first recovery, same-head resume, exact-source replies, changed heads, revoked access, pending/uncertain/mixed publications, final commit revalidation, no duplicate review and no self-wake. - **15 existing publication tests passed before the pinned merge** on a separate fresh database. They retain default partial-delivery and failure-fallback behavior. Context reads remain below the unchanged 16 KiB heartbeat and publication response limits with large saved output present. - Saved-input tests cover a real signed PR webhook, production accounting-budget refusal, normal policy recovery and canonical Retry. Historical producer-shaped tests prove the missing-App case red, then check trusted prior receipts and malformed, late, revoked or mismatched proof. A broader order-coupled test was reproduced on the prior source; its global fault injector now targets its own authorization query. The 43-case sequence passes without changing production behavior or its safety assertions. - New signed-ingress and real heartbeat execution tests reproduced the admitted-successor failure, then the next normal Retry failure. The final pinned merged source passes 249 full GitHub review/publication and Retry cases on a fresh database, including all 49 saved-input cases. A separate 74-case Retry/HTTP run also passes. Exact dispatch negatives cover source, company, agent, task, successor, receipt, pause, assignment, accepted success, controller and cleanup proof. Bootstrap contradictions remain denied. The canonical Retry suite passes 16 cases through its supported external PostgreSQL test connection. - The normal board HTTP route reproduced the unusable inherited-result refusal. It now returns actionable guidance without starting a successor. The actual UI Retry hook and banner tests pass 12 cases. - A production-shaped accepted board comment followed by a pre-provider qualification failure reproduced HTTP 409 before the repair. The final real HTTP/queue test certifies one canonical successor and preserves the accepted identity. It rejects changed source, actor, task, agent, result, controller, process, profile, allocation and receipt evidence. A post-acceptance source change keeps the same intent pending. Execution revalidation rejects removed or mismatched proof. The probe stops deliberately after production identity initialization; it does not claim provider execution. The final source passes the 75-case Retry group, the focused two-case board/inherited-policy group and 19 canonical Retry cases. Full workspace typecheck, build and map checks pass. - Full workspace `pnpm -r typecheck` and `pnpm build` pass. Map, module-boundary and diff checks pass. Full local `pnpm test:run` remains unverified. The 256-case explicit-native suite cannot initialize its packaged PostgreSQL because libzstd is absent; an existing command-scoped fallback did not resolve it. Current-head remote full-suite checks are required. Merged-source full GitHub+Retry (249), separate Retry/HTTP (74), full wait/status (252), profile/history and completion (75), and visible Retry hook/banner (12) checks pass. The fresh owned PostgreSQL 18 databases applied all 377 migrations. - Actual Rust Runner, OpenCode 1.18.34 and exact DeepSeek used unchanged production-generated synthetic contexts. Resume finished with an explicit server wait. The author-reply trial omitted continuation twice: its first report failed the existing empty-criteria check; the corrected second report still omitted continuation and received the exact server wait. It completed once with no missing-wait loop or Done escalation. Controller acknowledgments were synthetic; these probes do not establish hosted publication or board state. - Hosted combined testing proved automatic admission of the exact saved author reply, a useful GitHub answer and committed passive wait. It required two malformed-continuation rejections before a nullish fallback succeeded. A later normal Pause/Resume completed in one finish with explicit response_wake and no new review/comment. The admitted normal Retry then exposed the execution guard gap repaired here. Those remain checkpoint results. On the final combined source, renewed normal Retry completed actual native provider work and GitHub publication, committed the passive wait, released ownership and cleaned up its environment. A subsequent ordinary unmentioned author reply woke once, made no GitHub tool calls or new assessment, and completed its first finish with an explicit response wake. Both exact leases expired with successful cleanup and the queue was empty. However, final destination inspection found a separate automatic fallback overwrote the existing summary with a generic no-final-response message. External summary preservation therefore remains failed acceptance; the separate publication repair in #17726 owns that producer. Full combined publication preservation has not passed. These hosted runs include the pinned-base native additions; they do not qualify Copilot v63. - Current-head automated review is 5/5 with zero unresolved threads. All current-head CI gates passed (54 successful checks/contexts, four skipped, none pending). The earlier login-cleanup idle-work assertion also reproduced locally while its controlled baseline passed; its cause remains unknown, but the exact assertion passed in the fresh current-head CI shard. No timeout, assertion or production workaround was added. This PR is ready for review within its source, authority, native finalization, state, wake and cleanup scope. The independent automatic fallback publication regression is tracked by #17726; no complete combined workflow pass is claimed. ## Risks - The latest saved review defines the durable head boundary. Ingress must record a new head before admission. A reply receipt proves delivery only for its exact saved source; a shared GitHub comment ID alone cannot authorize this wait. - Historical App recovery cannot infer identity without direct proof or an earlier valid server response receipt. It never replays that response. - This does not infer review-score policy from instructions or override Done. No deployment, merge or repair of historical tasks is claimed by the PR. ## Model Used OpenAI `gpt-6.1-sol`, with reasoning, repository inspection, code editing and test execution. The context-window size is not exposed in this session. ## Checklist - [x] I have included a thinking path that traces from project context to this change - [x] I have specified the model used (with version and capability details) - [x] I have checked ROADMAP.md and confirmed this PR does not duplicate planned core work - [x] I have searched GitHub for duplicate or related PRs and linked them above - [x] I have either (a) linked existing issues with `Fixes: #` / `Closes #` / `Refs #` OR (b) described the issue in-PR following the relevant issue template - [x] I have not referenced internal/instance-local Paperclip issues or links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip` URLs) - [x] My branch name describes the change (e.g. `docs/...`, `fix/...`) and contains no internal Paperclip ticket id or instance-derived details - [x] I have run tests locally and they pass (focused database and native suites; full local suite limitation described above) - [x] I have added or updated tests where applicable - [x] I have updated relevant documentation to reflect my changes - [x] I have considered and documented any risks above - [x] All Paperclip CI gates are green (verified on immutable latest head) - [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups (verified on the latest head) - [x] I will address all Greptile and reviewer comments before requesting merge --------- Co-authored-by: Paperclip <noreply@paperclip.ing>	2026-10-26 22:22:47 -05:00
DottaandPaperclip	f0877a9c7c	fix: recover native work and requalify saved computers (#17724) ... <!-- entire-trail-link-start --> https://entire.com/gh/paperclipai/-/trails/32/changes/paperclip/32 <!-- entire-trail-link-end --> ## Thinking Path > - Paperclip manages AI agents and preserves their work after an interruption. > - Native Stop must confirm termination and save the workspace. > - Task and run views must show the current recovery receipt. > - A new external reply can arrive while that cleanup is pending. > - The reply must return to its original chat owner after cleanup. > - A successful fresh retry also becomes the task’s bound workspace for its next ordinary turn. > - Managed computer updates can invalidate a saved snapshot qualification. > - This pull request fixes those instructions, acknowledgements, handoffs and the existing native-agent Test path. > - The operator can continue with new input while the stopped turn remains preserved. ## Linked Issues or Issue Description **What happened?** Stopped native runs could keep the initial workspace-repair instruction after files were recovered. Native Stop could also leave the shared cancellation state at requested after remote termination was confirmed. A new GitHub reply saved during cleanup could then remain queued because cleanup did not ask its original inbound owner to reconsider the receipt. After a managed snapshot update, an existing native agent could also need qualification while the generic environment Test required instance-admin access. **Expected behavior** Show the current saved-work state. Acknowledge Stop only after exact termination proof. Let an authorized operator use the existing saved-agent Run test to qualify its current computer. After cleanup, recheck the saved reply's current authority and admit it once as new input. Preserve the stopped run and uncertain external effects. **Steps to reproduce** 1. Stop an active native turn before it returns a semantic result. 2. Send a new authorized external reply while cleanup is pending. 3. Let workspace recovery and provider cleanup finish. Inspect the run instruction, Stop acknowledgement and queued reply. Related work: #17594 preserves native processes through controller outages. #17401 addresses a separate bootstrap failure. This pull request does not replace those fixes. ## What Changed - Use the exact run's workspace recovery receipt for task and run guidance, including the Activity ledger. - Retire an obsolete exact-session notice through the existing bounded reconciler. Preserve the separate no-replay hold. - Write the shared native Stop acknowledgement only after the audited Stop intent and every exact remote lease receipt match. - Delegate saved external input to the live inbound owner. Recheck its source, actor, endpoint, principal and conversation generation. Promote the same receipt in the transaction that creates its new run. - Use that owner from the cleanup callback and existing stranded-queue catch-up after a lost callback or restart. A denied source cannot abort other items. - Reuse the current private task directory after a successful fresh retry. Re-read the company/task/workspace binding and validate the canonical stable or attempt namespace without recreating missing files; keep a later fresh retry separate. - Extend the existing agent-scoped qualification owner to native agents. The clean saved-agent Test qualifies its exact computer before runtime testing. Reuse a current proof; require a real probe and verified cleanup for a stale proof. Preserve draft tests and metadata-only external/pool previews. - Update execution semantics, capability maps and the recovery verification recipe. Add a production-page Storybook interaction for the normal native Test. ## Verification - **Red:** persisted recovery states returned stale instructions; an exact terminated native lease left shared Stop requested; the real GitHub subscribed-message fixture left zero successors after cleanup. The controlled baseline restored the previous production source, reproduced the failure, then restored the fixed bytes with matching SHA-256 hashes. - **Green:** 382 durable-chat, native-continuation, Stop and recovery tests pass. The real GitHub/PostgreSQL handoff matrix passes 12/12. It covers callback, application restart, callback/sweep race, valid input behind a deleted source, and denial for unknown stop, wrong allocation, paused endpoint, revoked principal, deleted or changed source, changed conversation generation and foreign scope. Repeated callbacks preserve one receipt, its actor, one successor and the unchanged stopped predecessor. - **Workspace continuation red/green:** the real PostgreSQL preparation flow created a fresh attempt and saved a marker, then rejected the next ordinary turn with the same binding mismatch observed in deployed use. The repaired preparation and filesystem suites pass 86/86: stable and attempt-root reuse, saved-marker preservation, a later clean sibling, changed current bindings, foreign company/task, closed workspace, traversal, missing path and symlink refusal. No task row reset or old-turn replay is used. - **Qualification red/green:** a native saved-agent qualification returned 422, and its normal Test skipped qualification. The repaired path passes 224 qualification/immutable-snapshot/environment tests and 176 UI/upgrade tests. It covers revoked authority, foreign or changed computer, current-proof reuse, failed/missing proof, draft settings, settings changed during the probe, and external/pool previews. On exact current source, the real local Harness / Runtime UI also qualified a newly saved disposable Computer with missing proof through actual Daytona, then completed the actual OpenCode/OpenRouter hello probe using `openrouter/deepseek/deepseek-v4.1-flash-1017`. Supported availability changed from Legacy-only to Paperclip Runner after proof persistence. Qualification and runtime leases both completed normal release/cleanup. The five prior task run IDs were unchanged; no task wake was created. This is macOS source-server/UI with real Linux Daytona and provider services, not a hosted UI claim. Test probes are archived by the existing inspection contract; release does not claim physical deletion. - Full workspace `pnpm -r typecheck`, `pnpm build`, token, map and diff checks pass at `f6450f4739fc8141815b8b7c35fde22a655c5f90`. The broad local `pnpm test:run` passed 24,899 tests and reported one existing nested-clone test timeout at 15 seconds. The complete failing file then passed 21/21 with the normal timeout; the exact case also passed on the pinned earlier baseline. The broad runner stopped before its later groups. No timeout or production workaround was added. Prior head `f6450f4` has 53 successful checks, two conditional Storybook skips and Greptile 5/5 with no inline threads. New workspace-reuse head `fcb13399ec70f92f71bd8250081251dca3f48962` passes workspace typecheck, full build, 86 scoped tests, maps and diff checks; Current-head CI has 53 successful checks and two conditional Storybook skips; Greptile is 5/5 with no inline findings. Deployed ordinary-turn reuse acceptance passed as described below. - **Hosted Stop proof:** the real GitHub issue-mention path used native OpenCode, `openrouter/deepseek/deepseek-v4.1-flash-1017`, Daytona and an exact low-trust task boundary. Normal UI Stop interrupted an active Bash call. Native and shared acknowledgements matched the exact lease. Automatic recovery saved exactly `STARTED\n` (8 bytes), with no finish marker. Reload showed Stopped and saved work recovered. Only the original cancelled run remained. Normal five-minute cleanup completed its exact provider-destruction transition. - **Limits:** the provider buffered command output, so the marker was read after recovery. The approved local provider credential could not inspect the hosted sandbox; its 404 is not deletion proof. Cleanup success comes from the exact lease's platform destruction transition. An earlier hosted stale instruction disappeared after rollout with unchanged raw run/action data; that historical cause remains unexplained. Original incident holds and publication receipts were untouched. - **Hosted handoff proof:** after QA deployed the combined candidate containing `46b2e99`, startup admitted the previously saved GitHub author reply without another comment, Retry or manual action. The new native run used the exact original wake receipt and saved comment. It completed once, committed an external-response wait, preserved the stopped predecessor, emptied the queue and left the task In review. The answer appeared in the original GitHub conversation. Workspace finalization and the exact lease's normal destruction transition succeeded. - **Hosted workspace proof:** on the combined candidate containing `fcb13399`, normal Retry preserved the original authenticated GitHub request and completed a fresh native attempt. One later ordinary same-head author reply then completed in the exact same workspace ID and attempt directory, with no Retry/fresh directive. Its input tree digest matched the Retry's finalized digest; final copyback preserved that digest. The persisted assessment row and all five prior run records were unchanged, exactly one new reply run completed, and the task returned to In review with an empty queue and no live run. Both exact leases completed normal verified destruction. This used real native OpenCode, the exact DeepSeek/OpenRouter model and Daytona, without workspace-row repair or a new remote marker. - **Publication limit:** the workspace audit compares the persisted assessment and run history. The ordinary reply exposed a separate destination-summary fallback that changed the visible GitHub summary despite the preserved assessment row. The publication track is repairing that behavior; this proof does not claim the visible summary was preserved. - **Deployment boundary:** current-head CI/review and hosted same-source Retry/ordinary-workspace reuse acceptance passed. The separate visible-summary publication failure remains owned by the publication track. Combined hosted UI confirmation of the native-agent Test path is coordinated separately. Actual missing-proof UI/provider qualification has passed in the isolated local instance above; prior hosted Stop and same-input handoff proof remains separate. No merge or deployment is performed by this pull request. ## Risks Recovery state and termination receipts must match the exact source run and allocation. Missing or foreign proof keeps the hold. The chat owner must retain the original receipt and actor and recheck current authority. Cleanup cannot grant authority or replay the stopped turn. Existing native ownership, Stop, budget, permission and uncertain-effect guards remain in place. ## Model Used OpenAI GPT-6.1 Sol (`gpt-6.1-sol`) through Codex, with reasoning, repository tools, source editing and test execution. The context-window size is not exposed in this session. ## Checklist - [x] I have included a thinking path that traces from project context to this change - [x] I have specified the model used (with version and capability details) - [x] I have checked ROADMAP.md and confirmed this PR does not duplicate planned core work - [x] I have searched GitHub for duplicate or related PRs and linked them above - [x] I have either (a) linked existing issues with `Fixes: #` / `Closes #` / `Refs #` OR (b) described the issue in-PR following the relevant issue template - [x] I have not referenced internal/instance-local Paperclip issues or links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip` URLs) - [x] My branch name describes the change (e.g. `docs/...`, `fix/...`) and contains no internal Paperclip ticket id or instance-derived details - [x] I have run tests locally and they pass (affected suites and isolated failing file pass; broad timeout retained above) - [x] I have added or updated tests where applicable - [x] I have updated relevant documentation to reflect my changes - [x] I have considered and documented any risks above - [x] All Paperclip CI gates are green (current fcb has 53 successful checks/two conditional Storybook skips) - [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups - [x] I will address all Greptile and reviewer comments before requesting merge --------- Co-authored-by: Paperclip <noreply@paperclip.ing>	2026-10-26 22:21:58 -05:00
3 people	6874fed05c	feat(adapters): refresh model catalogs and sandbox CLI pins (Oct 23 audit) (#17809) ... <!-- entire-trail-link-start --> https://entire.com/gh/paperclipai/-/trails/26/changes/paperclip/26 <!-- entire-trail-link-end --> ## Thinking Path > - Paperclip is the open source app people use to manage AI agents for work. > - Agents run on coding harnesses. Each adapter has a model catalog, and sandboxes contain pinned CLIs. > - Upstream providers released new CLI versions and new models. OpenAI retired some Codex models for ChatGPT sign-in. > - A stale catalog hides valid models. A misleading error makes operators upgrade a CLI that is already current. > - This pull request adds verified OpenCode model IDs, names Codex ChatGPT retirements in the environment Test, and refreshes the sandbox CLI pins. > - The benefit is that operators can select current models and get the correct reason when a retired model fails. ## Linked Issues or Issue Description Refs #16708 (adds Claude Haiku 5.5 to `claude_local`; this PR does not duplicate it). Refs #17245 (moves the Codex runtime to 0.163.0; this PR does not change Codex pins). **What happened?** OpenAI retired `gpt-5.5` (October 14, 2026) and `gpt-5.4` / `gpt-5.4-mini` (August 31, 2026) from Codex with ChatGPT sign-in. A saved agent with one of these models and ChatGPT sign-in now fails. The legacy environment Test says that the plan, the rollout, or an old CLI can be the cause. The Paperclip Runner Test gives generic account and runtime advice. The real cause is the retirement. **Expected behavior** Both Tests give the retirement date and the documented replacement. API-key users keep the models. **Proposed change** Record the verified retirements. Add the new verified OpenCode IDs. Refresh the sandbox CLI pins with verified digests. Record the audit. ## What Changed - Codex: add a table of models retired from Codex with ChatGPT sign-in (`gpt-5.5` → `gpt-6.1-sol`, or `gpt-6-luna` on Free and Go; `gpt-5.4` → `gpt-6-sol`; `gpt-5.4-mini` → `gpt-6-luna`). The shared `codexChatGptRetirementHint` builds the hint. The legacy CLI Test (`codexHelloProbeModelRejectionCheck`) and the Paperclip Runner Test (`testNativeRunnerAuthentication`) both use it when the backend rejects one of these models. For other failures, the Paperclip Runner Test hint stays the same. The picker keeps the models for API-key users. - OpenCode: add `anthropic/claude-haiku-5-5` and `google/gemini-4-argon` to the remote fallback catalog. The Paperclip Runner OpenCode picker also uses this catalog. - Evaluation image sandbox layer (`docker/daytona-runner`): | CLI | Before | After | | --- | --- | --- | | Grok CLI | 1.0.46 | 1.0.70 | | Gemini CLI | 0.62.0 | 0.65.0 | | Kimi Code | 2.1.1 | 2.3.3 | | Cursor CLI | 2026.10.01-e373342 | 2026.10.22-27dcf5f | | GitHub CLI | 2.102.0 | 2.103.3 | - Add `doc/adapter-model-audit-2026-10-23.md` with sources, compatibility findings, and deferred items. No model in this PR needs a newer Codex, Claude, or OpenCode runtime than the current pins. Claude Haiku 5.5 needs Claude Code 2.1.293 or later; #16708 records that floor, and this PR does not add it. ## Verification - `vitest run src/index.test.ts src/server/test.remote.test.ts src/server/acp.cli-version.test.ts` in `packages/adapters/codex-local`: 41 passed. - `vitest run src/services/native-runtime/setup-readiness.test.ts` in `server`: 98 passed. These include the two new Paperclip Runner Test cases: a retired model shows the retirement hint, and a model that is not retired keeps the generic hint. The retirement case fails on the earlier code. Run with the host's empty `ANTHROPIC_BASE_URL` unset; see the baseline note in the audit doc. - `vitest run` in `packages/adapters/opencode-local`: 87 passed. - `vitest run src/__tests__/adapter-models.test.ts` in `server`: 27 passed. - `tsc --noEmit` in `packages/adapters/codex-local` and `packages/adapters/opencode-local`: passed. - Cursor archive SHA-256 `85296944e4600a83c4b764f578d1502bf9c416db200d33a593e8f3ecabfdc294` is computed from the versioned Linux x64 tarball. The extracted binary reports `2026.10.22-27dcf5f`. On October 26, 2026, `https://cursor.com/install` still resolves this version. - GitHub CLI SHA-256 `4c806978ffce1cec70853302a56d70ac6da4f19bae7adca4e1a8ab00633dd91d` matches `gh_2.103.3_checksums.txt`. - Grok CLI 1.0.70 and Kimi Code 2.3.3 installed from npm report those versions. The flags that Paperclip uses (`-m`, `--effort`, `grok models`; `-m`, `-p`, `--output-format`, `acp`) are present in `--help`. - `git merge-tree` with #16708 (head `3a06740e9`) and #17245 (head `41f9c611f`): this PR shares no files with either PR. The two PRs can merge in any order. - Not run in the authoring environment: the full `pnpm -r typecheck` and `pnpm build` (no Rust toolchain), the full server `tsc` (memory limit), and the image build. CI runs these. ## Risks - Low risk for catalogs: the IDs are additive suggestions. No saved selection, default, or spending setting changes. - The Paperclip Runner Test changes only the hint text, and only for a ChatGPT rejection of a retired model. Check codes and pass/fail results do not change. - Sandbox CLI pins: - Kimi Code 2.2.0 and 2.3.0 remove the `kaos` MCP executor and require qualified plugin skill names. Paperclip uses neither. Kimi Code 2.3.2 stops automatic swarms in `kimi -p` and ACP sessions. - Gemini CLI 0.65.0 makes workspace settings read-only in untrusted folders. Paperclip writes home settings and sets `GEMINI_CLI_TRUST_WORKSPACE` for remote runs. - xAI publishes no Grok CLI changelog. Grok 1.0.70 behavior changes are verified only against the CLI reference and `--help`. - The pins apply only after a new image is built and promoted. The fleet sandbox image definition must get the same pins. - Rollback: revert this PR. ## Model Used - Claude Opus 5.5 (`claude-opus-5-5`), Anthropic, with tool use (shell, web research, repository search). ## Checklist - [x] I have included a thinking path that traces from project context to this change - [x] I have specified the model used (with version and capability details) - [x] I have checked ROADMAP.md and confirmed this PR does not duplicate planned core work - [x] I have searched GitHub for duplicate or related PRs and linked them above - [x] I have either (a) linked existing issues with `Fixes: #` / `Closes #` / `Refs #` OR (b) described the issue in-PR following the relevant issue template - [x] I have not referenced internal/instance-local Paperclip issues or links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip` URLs) - [x] My branch name describes the change (e.g. `docs/...`, `fix/...`) and contains no internal Paperclip ticket id or instance-derived details - [x] I have run tests locally and they pass - [x] I have added or updated tests where applicable - [x] I have updated relevant documentation to reflect my changes - [x] I have considered and documented any risks above - [ ] All Paperclip CI gates are green - [ ] Greptile is 5/5 with no open P2s, recommendations, or follow-ups - [x] I will address all Greptile and reviewer comments before requesting merge 🤖 Generated with [Claude Code](https://claude.com/claude-code) --------- Co-authored-by: Claude Opus 5.5 <noreply@anthropic.com> Co-authored-by: Paperclip <noreply@paperclip.ing>	2026-10-26 16:32:13 -07:00
DottaandPaperclip	32ec84db2e	fix(native): restore plugin checkpoints for same-run retries (#17814) ... ## Thinking Path > - Paperclip manages AI agents and their work. > - Native sessions retain provider state across execution attempts. > - A same-run retry can receive a replacement plugin task lease. > - The executor loaded the old task checkpoint only for crash recovery. > - An ordinary retry could fail its local authority check before reading that checkpoint. > - This change restores the checkpoint through the existing authorized lease transfer. ## Linked Issues or Issue Description **What happened?** A native provider turn ended without its completion result. Paperclip scheduled an exact-checkpoint retry on the same heartbeat run. The retry acquired a new plugin task lease, then failed with `runner_state_identity_mismatch: authority_indeterminate`. The checkpoint restore branch required a `resume_dead_runner` restart claim. Ordinary same-run retries have no such claim. A controlled fixture with a retained remote checkpoint and no local lifecycle receipt reproduces the error. The original controller file contents were unavailable, so that part of the incident mechanism remains inferred. **Expected behavior** Load the retained plugin checkpoint after the existing policy proves the lease transfer is safe. Keep the original run, session, and saved control journal. Reject an unverified predecessor or a changed checkpoint identity. **Steps to reproduce** 1. Start a native session through a plugin task environment. 2. End its provider turn without a completion result and retain its checkpoint. 3. Retry the same run on a replacement task lease without a restart claim. 4. With no local lifecycle receipt, observe the authority error before the checkpoint read. **Paperclip version or commit** Reproduced against source `507dc70be26c191e372f09e58dc0965e73bf8f57`. **Deployment mode** Native Runner with a plugin task environment. The observed provider used ACPX Claude. The controlled executor fixture uses the shared native boundary. Related work: #17439 concerns recovery after controller replacement. This fix uses the existing checkpoint contract and does not depend on that PR. ## What Changed - Restore prior plugin state for an ordinary same-run attempt when its lease changes. - Keep the existing company, agent, workspace, retained-state, and termination checks. - Extend executor regressions for ordinary retries, mismatched checkpoints, and missing stop proof. - Exercise the same-run checkpoint read through the database-backed task API. - Document the recovery rule and verification recipes. ## Verification - Failing before: the ordinary retry reproduces `authority_indeterminate`. Both new denial cases also fail because the old branch never reaches the transfer policy. - Passing after: all six focused checkpoint cases pass. The saved control journal stays byte-for-byte unchanged. Rejected cases do not construct a provider backend. - `pnpm -r typecheck` passes. - Map and module-boundary checks pass. - All 858 executor, database lease-authority, plugin task, and ownership tests pass. `pnpm build` passes. - The broad local `pnpm test:run` attempt did not complete. It hit a 20-second timeout in the existing historical workspace-recovery HTTP Retry case. That exact case then passed in isolation on the unchanged head. The broad local attempt was stopped after the full CI matrix passed; it is not counted as a local pass. - Greptile reviewed current head `5bc11fa978ab87d3d9c5d575fa9666185aaafc2c` at 5/5 with no actionable findings. The full current-head CI matrix passed on attempt 2: 55 checks passed, no pending or failed checks, and two expected Storybook jobs skipped. - The first broader local attempt could not bind embedded PostgreSQL inside the sandbox (`EPERM`). It was stopped and restarted with loopback access. This was a setup failure, separate from the observed red regression. - The first CI attempt failed two existing checks: the process-adapter signoff happy path exhausted its run wait budget, and the workspace export scheduler did not reach `complete` within 20 seconds. Both tests pass in isolated local runs on the unchanged head. Both failed shards passed on their single rerun without code changes. The initial failures remain recorded. Their timing cause is not proven by the later passes. - Live acceptance at the fixed revision has not run. The hosted workspace still serves the earlier release. No deployment or retry of the original task is claimed. ## Risks The new checkpoint read runs only for same-run plugin recovery with a replacement lease. Missing termination proof, changed scope, or a changed Runner identity still stops execution. The lease resolver owns these checks. The fix does not replay tools or change retry budgets. A turn that omitted its completion result still needs the existing bounded continuation to finish useful work. ## Model Used OpenAI GPT-6 through Codex, with reasoning, repository tools, and code execution. The runtime does not expose a more specific backend model ID or context-window size. ## Checklist - [x] I have included a thinking path that traces from project context to this change - [x] I have specified the model used (with version and capability details) - [x] I have checked ROADMAP.md and confirmed this PR does not duplicate planned core work - [x] I have searched GitHub for duplicate or related PRs and linked them above - [x] I have either (a) linked existing issues with `Fixes: #` / `Closes #` / `Refs #` OR (b) described the issue in-PR following the relevant issue template - [x] I have not referenced internal/instance-local Paperclip issues or links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip` URLs) - [x] My branch name describes the change (e.g. `docs/...`, `fix/...`) and contains no internal Paperclip ticket id or instance-derived details - [x] I have run tests locally and they pass - [x] I have added or updated tests where applicable - [x] I have updated relevant documentation to reflect my changes - [x] I have considered and documented any risks above - [x] All Paperclip CI gates are green - [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups - [x] I will address all Greptile and reviewer comments before requesting merge Co-authored-by: Paperclip <noreply@paperclip.ing>	2026-10-26 18:01:55 -05:00
DottaandPaperclip	718c73dafe	fix(native): require verified remote process exit receipts (#17799) ... Require fresh ESRCH or an exact matching zombie generation before treating a remote Runner as stopped. Preserve uncertain ownership through adoption and transport close, retire local controller resources after failed close, and check Node before remote launch. Bind the shared transport change in Copilot profile 62 while retaining historical profile decoding. Add red-green process, permission, launch, adoption and cleanup regressions. Thanks to @hsm-lv for the original investigation in #17073. Co-Authored-By: Paperclip <noreply@paperclip.ing>	2026-10-26 21:39:04 +00:00
DottaandPaperclip	9ae4c25e7e	perf(runner): reuse compatible protected provider packs (#17749) ... ## Thinking Path > - Paperclip is the open source app people use to manage AI agents for work. > - Native Runner starts provider runtimes in remote execution environments. > - Sandbox images already contain qualified provider packs. > - Startup required the image pack to match the entire current app release manifest. > - An unrelated app commit could therefore cause pack verification, transfer, and installation again. > - This pull request selects protected packs by their provider interface and platform. > - The benefit is no extra pack probe, directory scan, version command, link, or upload on the compatible image path. ## Linked Issues or Issue Description **What happened?** Starting a remote task can reject a compatible image pack because its source revision or unrelated provider differs from the controller. Pack replacement added about 16 seconds in the investigated startup. Startup also repeated full content checks. **Expected behavior** Use an already qualified, protected pack when its selected provider interface and target platform are compatible. Keep the selected artifact identity for process launch and recovery. **Steps to reproduce** 1. Install a qualified provider pack in a sandbox image. 2. Start a controller built from another app commit. 3. Start a remote OpenCode task. The old complete-manifest comparison rejects the image pack even when the provider interface still works. Related repairs: #16493 reduced transfer cost. #17512 retained exact artifact authority during reattachment. This change preserves that recovery rule and changes fresh-launch pack selection. ## What Changed - Add explicit OpenCode and ACPX interface revisions to produced pack manifests. App Git SHAs and dependency pins remain provenance. - Read bounded protected-installation metadata in the existing final runner metadata query. Accept only root-owned paths that the execution user cannot write, including ancestors and manifest. Reject writable aliases. - Select and prepare the pack in server-owned environment setup before constructing the existing transport. Bind provider launch paths and digests from the selected installation. Save that identity for exact reattachment. - Keep full content verification for uploads, writable installations, and legacy packs. Reuse successful verification within one startup. Keep older attached runners compatible with the optional metadata request. - Seal image packs and document the one-time image refresh that enables reuse across later compatible releases. Keep selected ACPX agent qualification checks. ## Verification - Red/green regression: the old code rejects a protected pack from another app revision with `manifest mismatch`; the fixed path selects it without executing verification commands. - Native startup regression: select the installed pack's own Node digest with one existing runner metadata request and no pack verification or version commands. - Targeted pack, artifact, recovery, execution-driver, and Rust metadata tests pass. Incompatible interfaces/platforms, malformed identities, writable roots, path aliases, and exact reattachment are covered. - Final revision `91dc1676ff67bdbe5866c8586daac10240530cca`: workspace typecheck and build pass. All 53 current-head checks are successful, with no pending or failed checks. Greptile is 5/5 with no open findings. - The broad local `pnpm test:run` attempt reported a workspace-runtime conflict test failure; its isolated rerun passed. The broad run was stopped after that failure. Full CI now passes, including the server test shards. This is not a claim that the full local run passed. - Linux filesystem evidence: the production metadata functions read a real root-owned preinstalled pack as a non-root user in 16 microseconds median and 20 microseconds p95 across 100 warm reads. This measures metadata admission, not model or hosted response latency. - All 910 affected server tests and 57 Copilot attestation tests pass locally on the final implementation. Full CI covers the unchanged Runner transport. No provider qualification hash was refreshed. - Built the actual Linux daemon at `416e7ec7425d0d3565b4a5e1808002d650a60414` and ran its metadata command as UID 65534. The protected installation returned its real manifest with `immutable: true`; writable alias and missing-pack cases returned `immutable: false`. This is metadata/permission evidence, not provider execution. - Hosted rollout and a hosted end-to-end latency measurement have not run. ## Risks - Existing images need one rebuild to publish the compatibility declaration. Packs without it keep the legacy content-verification path. - Fast admission relies on image publication producing a qualified protected tree. Root execution and task-writable installations retain full verification. - Bump an interface revision when required runner/pack behavior changes incompatibly. Deploy a new image to roll out compatible runtime fixes or upgrades. - This removes provider-pack preparation delay. Other runner startup, context, model, and finalization costs remain separate. ## Model Used OpenAI Codex, configured model `gpt-6.1-sol`, reasoning effort `xhigh`, with tool use and code execution. The context-window size is not exposed in this session. ## Checklist - [x] I have included a thinking path that traces from project context to this change - [x] I have specified the model used (with version and capability details) - [x] I have checked ROADMAP.md and confirmed this PR does not duplicate planned core work - [x] I have searched GitHub for duplicate or related PRs and linked them above - [x] I have either (a) linked existing issues with `Fixes: #` / `Closes #` / `Refs #` OR (b) described the issue in-PR following the relevant issue template - [x] I have not referenced internal/instance-local Paperclip issues or links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip` URLs) - [x] My branch name describes the change (e.g. `docs/...`, `fix/...`) and contains no internal Paperclip ticket id or instance-derived details - [x] I have run tests locally and they pass - [x] I have added or updated tests where applicable - [x] I have updated relevant documentation to reflect my changes - [x] I have considered and documented any risks above - [x] All Paperclip CI gates are green - [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups - [x] I will address all Greptile and reviewer comments before requesting merge --------- Co-authored-by: Paperclip <noreply@paperclip.ing>	2026-10-26 14:43:12 -05:00
DottaandPaperclip	063a498b54	Bound native OpenCode assigned-tool catalog projection (#17740) ... ## Thinking Path > - Paperclip is the open source app people use to manage AI agents for work. > - Native agents use assigned connection tools through a governed gateway. > - OpenCode received the gateway catalog directly, outside the bounded server tool projection. > - A large catalog can exceed a provider grammar compiler's capacity even when it fits the transport limits. > - Synthetic requests reproduced the Fireworks grammar timeout on the configured DeepSeek model. > - This pull request gives OpenCode two assigned-tool discovery and call schemas through the existing server relay. > - The gateway keeps the same grants, validation, approvals, revocation, and audit rules. ## Linked Issues or Issue Description **What happened?** A native OpenCode run could fail during provider grammar compilation before its first assigned-tool call. OpenCode advertised the full assigned gateway catalog. A synthetic catalog of 741 tool schemas reproduced `Grammar processing took too much time` on Fireworks through OpenRouter with `deepseek/deepseek-v4.1-flash-1017`. The same model and backend accepted a compact two-tool discovery/call catalog. This reproduces the mechanism; it does not replay a historical private request. **Expected behavior** Assigned-tool discovery must keep provider grammar size bounded. Every call must retain the run's original gateway binding and permissions. **Steps to reproduce** 1. Give a native OpenCode run a large assigned connection catalog. 2. Use a provider that compiles tool schemas into a constrained output grammar. 3. Observe the full catalog in the provider tool surface before this change. 4. After this change, observe only `paperclip_search_assigned_tools` and `paperclip_call_assigned_tool` for assigned tools. Discover and call a permitted tool through its pinned alias. **Paperclip version or commit** Source checkout based on current `master`. **Deployment mode** Native local or sandbox execution with OpenCode 1.18.34. Related work: Refs #14258 (discovery paging), #16678 (local adapter MCP launch), and #17688 (gateway capability advertisement). This change covers native OpenCode catalog projection. ## What Changed - Route native OpenCode assigned tools through the existing server-owned authenticated relay. - Use bounded discovery/call schemas for OpenCode, including small catalogs. Preserve transport capacity checks. - Keep assigned gateway credentials on the controller. Ignore gateway and credential values in tool arguments. - Preserve exact declared MCP operation names through admission and driver dispatch. Resolve transport prefixes only against the closed catalog. Reject unknown or shortened names. - Refresh former OpenCode direct-catalog and shortened-name checkpoints. Keep the existing fingerprints for other providers. - Add local and remote wiring, catalog capacity, alias, scope, work-mode, approval, and revocation tests. - Allow the native test files to use a validated dedicated external test database when embedded PostgreSQL is unavailable. - Document the assigned-tool execution contract. - Bound OpenCode discovery pages to 32 KiB and large-schema chunks to 16K characters. Keep other harness budgets unchanged. - Test medium pages and escaped large schemas through the actual HTTP MCP bridge on the explicit Runner testing surface. ## Verification - Red before the catalog fix: OpenCode did not create the server relay, and forced compact delivery advertised 1 or 741 direct schemas. - Red before the alias repair: HTTP MCP changed declared operation names, and the driver sent `search_assigned_tools` instead of the authorized `paperclip_search_assigned_tools`. - Current repair tests: 112 OpenCode/proxy tests pass, plus one actual Rust/proxy/HTTP MCP regression. Two checkpoint regressions fail with the former scoped revision and pass with the new revision. Other providers keep their prior fingerprints. - The combined QA candidate with this exact PR head passes all 916 native tests and all 113 transport tests on supported Node 24.22. An earlier Node 26.4/macOS run passed the 113 assertions but had an uncaught networking error. That non-clean run remains recorded; its stack matches [the upstream Undici defect](https://github.com/nodejs/undici/issues/5544). No production workaround or error suppression was added. - `pnpm -r typecheck`, `pnpm build`, and `git diff --check` pass on `bc41ba72be2195eabeb0d7727227ee0cd02e8532`. The maps structural check passes. - The local `pnpm test:run` attempt stopped after host embedded PostgreSQL initialization failures. The relevant database suites pass with isolated PostgreSQL 18. All repository CI gates, including aggregate `ci / verify`, pass on the current head. - Synthetic live provider comparison: 741 invented schemas produced the exact Fireworks grammar timeout in 20.9 seconds. Two compact invented schemas produced a discovery call in 585 ms on the same model and backend. - The first hosted QA attempt exposed the alias failure described above. On the patched source, a real local Rust runner → proxy → OpenCode 1.18.34 → exact DeepSeek smoke completed discovery, one synthetic gateway read, and `paperclip_finish`, then emitted `turn/completed`. It used the production compact projection and unchanged Rust allowlist. - Two earlier local smoke attempts exposed missing terminal authority and completion-contract fields in the smoke harness. Those failures remain recorded. The corrected ordinary bindings produced the clean result. - Fresh Greptile: 5/5 on `bc41ba72be2195eabeb0d7727227ee0cd02e8532`, with no new actionable findings or unresolved threads. - Hosted QA publication and lifecycle acceptance remain pending. The separate deployed-agent `Paperclip Review` check is also pending; it follows a task that failed on the earlier deployed runtime. - Local OpenCode/OpenRouter acceptance at `bc41ba72`: 530 synthetic tools were authorized and installed. A simple model-ID reply completed in 17.3 seconds with no app calls. A discovery task completed in 37.6 seconds, used the search/call relay, made one upstream call, and returned the exact synthetic value. This is local source acceptance, not a staging sandbox timing comparison. - The large-result review finding has a failing-before/passing-after HTTP MCP regression. Five medium schemas now page without invalid JSON. A large schema with escaped text reconstructs exactly through bounded chunks. All 35 assigned-tool tests and the server typecheck pass after this follow-up. - Final head `d84ce4856a6e65a35ad5fb8b561492598b525f4e`: all CI gates pass. Greptile and Paperclip Review both rate the change 5/5. No review threads remain open. The final full build, server typecheck, and 35 assigned-tool tests pass locally. ## Risks - OpenCode uses discovery before it calls an assigned tool, including for small catalogs. This can add a model turn. - An existing OpenCode provider checkpoint rotates once because it retains the former tool declarations. Paperclip task history remains available. - The historical filtered catalog was not captured. The synthetic comparison proves the failure mechanism, not the exact cardinality of an earlier private request. - No model, provider route, permission, or automatic retry policy changes. ## Model Used The bounded-result follow-up also used OpenAI Codex (GPT-6 family). The exact backend model ID and context-window size were not exposed for that session. It used reasoning, code execution, and tool use. OpenAI `gpt-6.1-sol` in Codex, with reasoning, tool use, code execution, and source inspection. The runtime does not expose the context-window size. ## Checklist - [x] I have included a thinking path that traces from project context to this change - [x] I have specified the model used (with version and capability details) - [x] I have checked ROADMAP.md and confirmed this PR does not duplicate planned core work - [x] I have searched GitHub for duplicate or related PRs and linked them above - [x] I have either (a) linked existing issues with `Fixes: #` / `Closes #` / `Refs #` OR (b) described the issue in-PR following the relevant issue template - [x] I have not referenced internal/instance-local Paperclip issues or links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip` URLs) - [x] My branch name describes the change (e.g. `docs/...`, `fix/...`) and contains no internal Paperclip ticket id or instance-derived details - [x] I have run tests locally and they pass - [x] I have added or updated tests where applicable - [x] I have updated relevant documentation to reflect my changes - [x] I have considered and documented any risks above - [x] All Paperclip CI gates are green - [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups - [x] I will address all Greptile and reviewer comments before requesting merge --------- Co-authored-by: Paperclip <noreply@paperclip.ing>	2026-10-26 10:49:23 -05:00
DottaandPaperclip	5823e9a664	fix(runner): preserve disabled Codex web search (#17744) ... ## Thinking Path > - Paperclip is the open source app people use to manage AI agents for work. > - Native Codex agents use the saved agent settings to prepare each provider launch. > - Onboarding saves web search as off, but native configuration conversion removes that setting. > - Codex 0.160.0 includes a hosted web-search tool by default, even in an authentication probe that asks it not to use tools. > - A gateway that permits only priced function tools can reject that request before budget admission. > - This change preserves the explicit restriction through native execution and disables web search for authentication probes. ## Linked Issues or Issue Description **What happened?** A native Codex authentication probe can include hosted web search. Normal task execution also loses a saved `search: false` setting. A restricted Responses gateway can reject these requests before it makes a model call. Related repairs: Refs #17445, Refs #17529. The roadmap and related PRs were checked; no duplicate repair was found. **Expected behavior** Authentication probes check the selected account and model without hosted web search. A saved search-off setting remains effective in native task launches, prepared launches, and session recovery. Existing behavior for an absent setting remains unchanged. **Steps to reproduce** 1. Create a Codex agent with search off and choose Paperclip Runner. 2. Use a Responses gateway that rejects hosted tools. 3. Inspect the request from the native authentication probe or task launch. Before this fix, the pinned Codex SDK includes `web_search` despite the saved setting. ## What Changed - Preserve an explicit search-off setting when native agent configuration is built and converted. - Carry the restriction in the durable native input and provider launch requirements. - Apply the restriction to authentication probes and normal launch paths, including custom arguments and recovery. - Reject prepared launches that discard the required restriction. Keep gateway billing rules unchanged. - Admit only the restrictive literal value in the strict plugin task API. Exercise the real plugin setup path. - Add regression coverage and document the policy. - Add the immutable Copilot v60 source identity required by the changed shared files. Preserve v59 and all original live evidence. Copilot authentication probes keep their prior launch requirements. ## Verification - Regression cases were run against the unfixed source and failed at the configuration and launch boundaries. - An isolated capture using the real Codex 0.160.0 app-server reproduced hosted-tool rejection. Disabling web search reached a mocked budget reservation. The helper and child processes permitted only loopback network access and used synthetic credentials. It made zero upstream calls. - Focused checks passed: 284 server cases, 61 native form cases, 198 backend/security/launch/parser cases, and 36 authentication/launch cases. A separate complete transport/launch/parser run passed 393 cases. These groups overlap. - Head `617b98f` passed workspace typecheck/build and 28/28 plugin contract and actual Runner probe tests with no skips. Final rebased head `20ff0c1` passed all current-head CI checks, including full isolated test lanes, and fresh Greptile and Paperclip reviews at 5/5. - The additive Copilot identity update passed 134 compatibility/policy/protocol checks and nine authentication probe checks. The real pinned Codex SDK capture was repeated after the final policy change: all five cases passed with zero upstream calls. - Two local full-suite attempts stopped after native PostgreSQL loader failures. Seven local dependency aliases were restored, and an isolated cluster initialized successfully. A third run later encountered host PostgreSQL semaphore exhaustion and was interrupted before source-profile regeneration. Its zero exit code after SIGINT is explicitly not a full-suite pass. Final full-suite verification runs in isolated CI; the local attempts remain recorded. - The first CI run exposed a missing strict plugin API field. Its five failures were reproduced locally, then passed after repair. The next run passed every underlying job except the source-identity guard. That guard now binds an additive identity with v59 retained. Final-head CI and both fresh reviews passed; addressed review threads are resolved. - The offline capture runs on Darwin ARM64. It does not prove the contents of a prior unretained Linux request or complete Cloud onboarding acceptance. ## Risks - The restriction must survive prepared launches and resumed sessions. Regression tests cover those boundaries. - Existing absent settings retain their prior behavior. This change does not add native search-on support or loosen gateway admission. - Older durable inputs without the optional restriction must remain valid. - Copilot now uses profile v60 for exact launch admission. Historical v59 inputs remain readable. The new declaration adds no live Copilot qualification and does not change its executable or admission flags. - A deployed Cloud acceptance run is still required after this source repair. ## Model Used - OpenAI GPT-6 through Codex, with reasoning, code execution, and delegated review. The exact backend model identifier and context-window size are not exposed in this session. ## Checklist - [x] I have included a thinking path that traces from project context to this change - [x] I have specified the model used (with version and capability details) - [x] I have checked ROADMAP.md and confirmed this PR does not duplicate planned core work - [x] I have searched GitHub for duplicate or related PRs and linked them above - [x] I have either (a) linked existing issues with `Fixes: #` / `Closes #` / `Refs #` OR (b) described the issue in-PR following the relevant issue template - [x] I have not referenced internal/instance-local Paperclip issues or links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip` URLs) - [x] My branch name describes the change (e.g. `docs/...`, `fix/...`) and contains no internal Paperclip ticket id or instance-derived details - [x] I have run tests locally and they pass - [x] I have added or updated tests where applicable - [x] I have updated relevant documentation to reflect my changes - [x] I have considered and documented any risks above - [x] All Paperclip CI gates are green - [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups - [x] I will address all Greptile and reviewer comments before requesting merge --------- Co-authored-by: Paperclip <noreply@paperclip.ing>	2026-10-26 10:29:51 -05:00
Devin FoleyandPaperclip	6336c34041	perf(chat): narrow bound-conversation authorization reads (#17684) ... Read current identity, policy, and setup credentials without transferring unused chat content. Preserve company predicates and all three lock modes. Verified workspace and server typechecks, the server build, 246 selected tests, all CI checks, and Apex 5/5. The setup cases use fixed ordered receipt and processing timestamps. Co-Authored-By: Paperclip <noreply@paperclip.ing>	2026-10-25 20:04:45 -07:00
Devin FoleyandPaperclip	5a28f7acf8	fix(server): include restored monitor proof in assessment identity (#17665) ... Include validated preserved monitor proof in the immutable assessment input so restored receipts or completion times can produce a new status decision at the same deadline. Preserve accepted results, earlier decisions, provider attempts, monitor deadlines, and idempotent replay. Validate two baseline regressions, 201 targeted tests on current master, workspace typecheck, server build, full CI, and Apex 5/5. Co-Authored-By: Paperclip <noreply@paperclip.ing>	2026-10-25 16:06:36 -07:00
Devin FoleyandPaperclip	332e4c5df9	fix(native): settle completed results that retain a valid monitor (#17641) ... Preserve a valid saved monitor after its successful source releases execution and checkout. Recheck accepted result identity, receipts, ownership and governance under the task lock. Notify the existing scheduler once and preserve accepted live and recovered replies. Apex 5/5 after fixing its reply-presentation finding. All CI checks, 191 focused tests, 293 broader native tests, workspace typecheck and server build pass. Hosted effects require staging verification. Co-Authored-By: Paperclip <noreply@paperclip.ing>	2026-10-25 10:47:02 -07:00
Devin FoleyandPaperclip	b792165ba4	Expire native runner continuity archives and quarantine (#17616) ... ## Thinking Path > - Paperclip is the open source app people use to manage AI agents for work > - Native runner sessions keep durable state under `<instance>/runtime/paperclip-runner/durable-sessions/` > - When a session starts a fresh provider session, the retired state is moved into `<session>/continuity-breaks/<epoch>-<uuid>/`; when state loses authority, it is moved into `quarantine/<session>.<reason>.<epoch>.<pid>.<uuid>/` > - Nothing ever removes either, and each can hold a full Codex home of several gigabytes > - A sleep-aware sweep already expires failover backup copies in the same tree > - This pull request extends that sweep to remove both kinds of evidence after a retention window, while keeping anything recovery may still read > - The benefit is that native runner disk use stops growing without bound ## Linked Issues or Issue Description Bug report described in-PR (bug report template). **What happened?** On one instance, one day of native runs produced 20 continuity-break archives totaling 4.8 GB, one session alone holding 4 GB. The quarantine folder held 12 entries totaling 2.1 GB, the oldest a month old. Neither is read again by normal operation (continuity-break archives are written by `archiveContinuityState` and never read), and nothing deletes them. They were removed by hand to free space and will regrow. **Expected behavior** Evidence older than a bounded window is removed automatically, as failover backup copies already are, without removing anything a live session or recovery path still needs. **Steps to reproduce** 1. Run a native Codex session that hits a continuity break (fresh provider session), or whose state is quarantined (for example `identity_indeterminate`). 2. Inspect `durable-sessions/<session>/continuity-breaks/` and `durable-sessions/quarantine/`. 3. Wait any length of time: the entries stay forever. **Paperclip version or commit:** `master` at e335265568. **Deployment mode:** any with native runner sessions. **Agent adapter(s) involved:** native runner (Codex, and any provider whose state lands in these folders). ## What Changed - `server/src/services/native-runtime/native-harness-backup-expiration.ts`: the existing tick also retires evidence. - **Continuity-break archives** (`<epoch ms>-<uuid>` under each session): removed when older than the window. Age is the epoch in the name, or the folder mtime when that epoch is in the future. `archiveContinuityState` refuses to archive state with warm-transition evidence, and no code path reads `continuity-breaks`. - **Quarantine entries** (`<session>.<identity_indeterminate|identity_mismatch>.<epoch ms>.<pid>.<uuid>`): removed by the same age rule. Native cleanup source archives (`<session>.identity_indeterminate.cleanup.<uuid>`) are referenced from recovery history, have no epoch, and keep their original inode's mtime, so they are always kept. - Every entry is skipped while its session is executing, initializing, warm, or closing in this process; this is checked again just before removal. Symlinked entries and symlinked `continuity-breaks`/`quarantine` folders are reported as `unsafe_path` and never followed. - Removal renames to `.expired-<uuid>` in the same folder and then deletes; later sweeps finish interrupted deletions. An empty `continuity-breaks` folder is removed. - Archives, quarantine entries, and leftover deletions count toward `maxEntries` and `maxRemovals`, and stop on `shouldContinue`. Paging resumes inside a session's archives and then in quarantine, so a bounded or dry-run batch always makes progress and never recounts a session's backup. - New result fields: `evidenceCandidates`, `evidenceCandidateBytes`, `evidenceRemoved`, `evidenceReclaimedBytes`, and skip reasons `recent_evidence` and `cleanup_archive`. The service also exposes `noteEvidence(writtenAt)`. - `server/src/services/native-runtime/native-runner-evidence-signal.ts` (new): a process-local signal. `native-session-executor.ts` raises it with the entry's epoch right after `archiveContinuityState` creates an archive and after `quarantineRunnerdStateRoot` moves state into quarantine; `server/src/index.ts` subscribes the sweep and unsubscribes on shutdown. - `server/src/config.ts`: `PAPERCLIP_NATIVE_RUNNER_EVIDENCE_RETENTION_DAYS` (default `7`, minimum `1`). - `server/src/index.ts`: passes the window and logs a batch when it found evidence candidates. - `doc/recoverable-disk-cleanup.md`, `doc/DEVELOPING.md`: document the variable and behavior. **Sleep-aware background work** (`rules/sleep-aware-background-work.mdc`): - *Trigger:* each entry's own expiry deadline (its epoch plus the window), plus a direct call from the executor when it writes new evidence. No timer, interval, or polling loop is added; the pass runs inside the existing sweep's tick and keeps its drain, warm-standby, and shutdown handling. - *Source of truth:* the filesystem entries themselves. After a restart the first sweep reconstructs the next deadline from them. - *Pending-work predicate / next deadline:* after a full pass the sweep keeps the earliest due time of the entries it retained; ticks before that time skip the evidence pass entirely (no readdir, no SQL). A busy session, a failed removal, or a full batch makes it due on the next sweep while that obligation remains. - *Quiet condition:* no evidence, or only evidence not yet due. The pass never queries the database, so retained evidence never causes recurring SQL. Dry run reports each candidate once rather than every hour. No code comments were added. ## Verification - `pnpm exec vitest run src/__tests__/native-harness-backup-expiration` (in `server/`, embedded Postgres): 52 passed. New cases: - old archives and quarantine entries are removed, recent ones kept; the empty `continuity-breaks` folder is removed; - age comes from the name, with mtime used for a future epoch; non-archive folders are ignored; - a busy session keeps its evidence, including when it becomes busy after the first check, and it is retried on the next tick; - dry run reports candidates and bytes, changes nothing (including leftovers), and reports each candidate once until new evidence comes due; - symlinked entries and symlinked evidence folders are skipped without touching the target; - an old quarantine entry is removed even when its session's issue is still open; cleanup source archives are kept; - the pass stays quiet until retained evidence is due, and a `noteEvidence` signal schedules newly written evidence; - inspected archives and leftovers count against `maxEntries`, and leftover removal stops on `shouldContinue` and resumes next tick; - a due pass stopped by drain before any session stays pending; one-entry batches finish without recounting a resumed session; - interrupted `.expired-*` deletions are finished; paging across ticks with `maxRemovals`, in normal and dry run, with no recount of the backup when resuming. - `native-session-executor.test.ts`: quarantining a legacy root raises the evidence signal with the epoch in the entry name. - `native-harness-backup-expiration-config`: default, explicit, minimum, and fallback parsing. - **Mutation checks**, each failing at least one test: removing the age check, the future-epoch fallback, either busy check, the busy retry deadline, the recent-entry deadline, the due gate, the `noteEvidence` update, merging the pass deadline, the entry and both folder symlink checks, the dry-run return, the dry-run leftover guard, leftover removal, the leftover budget check and its retry deadline, counting archives against `maxEntries`, the cleanup-archive skip, the empty-folder removal, the resume cursor, the per-archive budget check, the resume skip of the backup pass, not charging a resumed session, keeping the pass active across drain, and the executor's quarantine signal. - `pnpm exec vitest run config native-harness native-workspace-sync-retention native-session-executor server-startup` (in `server/`): 1272 passed on the previous commit; `config native-harness native-workspace-sync-retention server-startup`: 450 passed on the head commit. - `pnpm run typecheck` (in `server/`): pass. - Not run: server build and boot smoke. The continuity-archive signal call is exercised only by a runner integration test that needs the runnerd binary. ## Risks - **Quarantine as a fail-closed fence:** recovery (`recoverQuiescentRunnerdState`) and failed-run retry (`nativeFailedRunRetryStateIsSafe`) treat a quarantined entry for a session as a reason not to bootstrap fresh. Once such an entry ages out, a later run of that session can start a fresh provider session instead of failing with `quarantine_owner_unverified`. This applies only after the window, matching what backup expiry already accepts for closed work. - **Signal coverage:** the signal is process-local. Evidence written by another process sharing the same state directory is picked up when the next retained deadline is due or after a restart, not immediately. - **Legacy-path quarantine:** entries quarantined from legacy roots carry a legacy digest, so the in-process busy check cannot match them; they are removed by age only. - **Remote sandboxes:** archives moved aside on a remote runner (`<root>.continuity-break-<token>`) are outside this sweep. ## Model Used - Claude Opus 5.5 (`claude-opus-5-5`), 1M context, through Claude Code with tool use (shell, file edits, tests). ## Checklist - [x] I have included a thinking path that traces from project context to this change - [x] I have specified the model used (with version and capability details) - [x] I have checked ROADMAP.md and confirmed this PR does not duplicate planned core work - [x] I have searched GitHub for duplicate or related PRs and linked them above - [x] I have either (a) linked existing issues with `Fixes: #` / `Closes #` / `Refs #` OR (b) described the issue in-PR following the relevant issue template - [x] I have not referenced internal/instance-local Paperclip issues or links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip` URLs) - [x] My branch name describes the change (e.g. `docs/...`, `fix/...`) and contains no internal Paperclip ticket id or instance-derived details - [x] I have run tests locally and they pass - [x] I have added or updated tests where applicable - [x] I have updated relevant documentation to reflect my changes - [x] I have considered and documented any risks above - [x] All Paperclip CI gates are green - [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups - [x] I will address all Greptile and reviewer comments before requesting merge --------- Co-authored-by: Paperclip <noreply@paperclip.ing>	2026-10-25 09:20:30 -07:00
Devin FoleyandPaperclip	34409a92c4	fix(native-runtime): stop failover backups from carrying throwaway provider state (#17618) ... ## Thinking Path > - Paperclip is the open source app people use to manage AI agents for work > - Native runner sessions on managed sandboxes keep a failover backup of provider state, so a replacement sandbox can resume the session > - Each backup copies the provider's runtime directory, with a per-directory sha256 manifest, minus `excludeEntries` > - Codex already excludes credentials and re-downloadable plugin caches; OpenCode excluded nothing, and ACPX excluded only per-agent credentials > - OpenCode also leaked a temporary HOME on every launch, because removing it failed on the read-only skill snapshot inside and the error was swallowed > - So every backup carried every earlier launch's HOME (with its npm cache) plus re-installable plugin `node_modules` > - This pull request removes those homes correctly, sweeps homes left by earlier versions, and excludes the throwaway entries from OpenCode and ACPX backups > - The benefit is much smaller backups and live session directories, while session history is still backed up and restored ## Linked Issues or Issue Description Bug report described in-PR (bug report template). **What happened?** On one instance, current native failover backups totalled 24 GB across about 300 sessions. For OpenCode sessions: - `opencode/<session>/home-XXXXXX/`: 170 per-launch HOME directories across 67 sessions, 9.3 GB. Each held `.npm` (about 111 MB of npm cache), `.claude` (the skill snapshot) and `.local`. - `opencode/<session>/config/opencode/node_modules`: 68 sessions, 4.3 GB of OpenCode plugin installs. One ACPX session also carried `acpx/<session>/data/pnpm/store` (229 MB in the current backup, several GB in older copies). Cause of the leaked homes: `startRuntime` in the OpenCode driver creates a fresh `mkdtemp` HOME for each launch and seals the assigned skills inside it (directories `0555`, files `0444`). `close()` and the startup-failure paths removed it with `rm(..., { recursive: true, force: true }).catch(() => undefined)`. That fails with `EACCES` on the sealed directories, and the failure was ignored, so each launch left its HOME behind. **Expected behavior** Per-launch homes are removed when the runtime closes, and backups hold only state needed to resume a session. Caches that the provider re-creates are left out. **Steps to reproduce** 1. Run an OpenCode native session with at least one assigned skill on a managed sandbox, over several turns or runs. 2. Inspect `<session>/` in the OpenCode runtime directory: one `home-XXXXXX` per launch remains. 3. Inspect `failover-backups/current/opencode/<session>/`: the same homes and `config/opencode/node_modules` are in the backup. **Paperclip version or commit:** `master` at e335265568. **Deployment mode:** any with native OpenCode/ACPX sessions on managed sandboxes. **Agent adapter(s) involved:** OpenCode (native), ACPX. ## What Changed - OpenCode driver (`packages/paperclip-runner/src/drivers/opencode/opencode-server-driver.ts`): - `removeIsolatedHome` unseals the skill snapshot with the existing `releaseMaterializedNativeRuntimeSkills`, then removes the HOME. Close and every startup-failure path use it. It only unseals when `.claude` is a real directory, not a symlink. - Per-launch homes are now created under `<session>/homes/home-XXXXXX`, so one exact path can be excluded. - When a session opens, `home-*` directories left at the session root by earlier versions are removed. History is not in them: OpenCode keeps it in `XDG_DATA_HOME` (`<session>/data/opencode/opencode.db`), and HOME only holds caches, state locks and the skill copy. - Exports `opencodeRuntimeSessionDirectoryName` (the existing session-directory naming) and `OPENCODE_ISOLATED_HOMES_DIRECTORY` for the server. - `resolveNativeHarnessPersistenceProfile` (`server/src/services/native-runtime/native-session-executor.ts`): - OpenCode excludes `<session>/homes` and `<session>/config/opencode/node_modules`. - ACPX (every agent) excludes `acpx/<session>/home/.npm` and `acpx/<session>/data/pnpm/store`, in addition to the existing per-agent entries. - `excludeEntries` are matched as exact relative paths (wildcards are rejected), so the session directory is computed in the same way as the existing ACPX entries. - Exposes the two new exports through the server's runner vendor shim. No code comments were added. ## Verification - `pnpm exec vitest run src/drivers/opencode src/drivers/runtime-context-materializer` (in `packages/paperclip-runner/`): 108 passed. The 1 failure, `uses provider structure rather than prose length to select a post-tool answer`, also fails on unmodified `master`. - The existing skill-tree test, with and without a startup retry, now asserts that homes are created under `homes/` and that `homes/` is empty after close. - New test: a sealed legacy `home-*` at the session root is removed when the session reopens, and `data/opencode/opencode.db` is kept. - `pnpm exec vitest run src/services/native-runtime/ src/__tests__/native-harness-backup-expiration.test.ts` (in `server/`): 5080 passed. `plugin-runner-probe` could not run locally because of a cargo manifest-path problem in this environment; it is unrelated to this change. - Profile tests cover the new OpenCode and ACPX exclusions, including a session id that needs sanitizing. - New checkpoint/restore round-trip tests for OpenCode and ACPX. They use `syncRemoteRunnerDirectoryOut` for the backup and `stageRemoteRunnerDirectory` for the replacement. Excluded caches are absent from both the backup and the replacement, while history, config and workspace files are restored and the live directory is unchanged. - **Mutation checks**, each failing its test: - removing the skill unsealing (homes leak again; 3 runner tests fail); - removing the legacy sweep (1 test fails); - emptying the OpenCode/ACPX exclusion lists (4 server tests fail). - Checked by hand against the bundled OpenCode 1.18.34 binary, with the driver's environment: - launching with a fresh HOME and no `config/opencode/node_modules` still lists earlier sessions; - OpenCode reinstalls the plugin dependencies on launch. - `pnpm run typecheck` in `server/` and `packages/paperclip-runner/`: pass. - Not run: server build and boot smoke. ## Risks - **Rollout:** existing backups still contain legacy `home-*` directories. After a restore, the sweep removes them when the session opens, and the next backup no longer carries them. - **First launch after restore:** OpenCode reinstalls its plugin dependencies and npm repopulates its cache. This needs network access to the npm registry, the same as a brand-new session. - **Crash leftovers:** a HOME left behind by a hard crash (the runner killed before `close()`) stays under `homes/` until the session directory is removed. It is still excluded from backups. Homes under `homes/` are not swept on open, to avoid touching a HOME that a concurrently running runtime might still use. - **pnpm store:** dropping the pnpm store from ACPX backups means the next `pnpm install` in a replacement sandbox downloads packages again. ## Model Used - Claude Opus 5.5 (`claude-opus-5-5`), 1M context, through Claude Code with tool use (shell, file edits, tests, and running the real OpenCode binary to check what state it reads on resume). ## Checklist - [x] I have included a thinking path that traces from project context to this change - [x] I have specified the model used (with version and capability details) - [x] I have checked ROADMAP.md and confirmed this PR does not duplicate planned core work - [x] I have searched GitHub for duplicate or related PRs and linked them above - [x] I have either (a) linked existing issues with `Fixes: #` / `Closes #` / `Refs #` OR (b) described the issue in-PR following the relevant issue template - [x] I have not referenced internal/instance-local Paperclip issues or links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip` URLs) - [x] My branch name describes the change (e.g. `docs/...`, `fix/...`) and contains no internal Paperclip ticket id or instance-derived details - [x] I have run tests locally and they pass - [x] I have added or updated tests where applicable - [x] I have updated relevant documentation to reflect my changes - [x] I have considered and documented any risks above - [ ] All Paperclip CI gates are green - [ ] Greptile is 5/5 with no open P2s, recommendations, or follow-ups - [ ] I will address all Greptile and reviewer comments before requesting merge Co-authored-by: Paperclip <noreply@paperclip.ing>	2026-10-25 08:51:39 -07:00
Devin FoleyandPaperclip	7ebf98eafd	fix(recovery): avoid duplicate terminal run status notifications (#17614) ... Retain pending status deliveries when Native or legacy terminal recovery projects the same state. Preserve completion time on unchanged Native terminal status. Real state, metadata, error, explicit patch, and retained-file changes still notify. The publisher acknowledgement, accepted results, retry deadlines, recovery holds, ownership checks, and workspace cleanup remain intact. Correct the queued Retry browser fixture race by releasing its old-process guard at the exact Retry request, requiring a successful response, and retaining fixture cleanup after failure. Validated by 159 focused tests, 653 wider Native recovery tests, six real Chromium/PostgreSQL browser cases, five queued Retry repeats, build/typecheck, exact-head Apex 5/5, and green required CI. The original detached-button CI timeout is documented in the PR. The additional full local repository Vitest command is still running and is not claimed complete. Co-Authored-By: Paperclip <noreply@paperclip.ing>	2026-10-25 08:22:53 -07:00
DottaandPaperclip	aec86c794b	fix(runner): preserve native work through controller outages (#17594) ... Keep remote native work under its authenticated connection lease through controller outages. Hold durable ACPX tools through reconnection, align the native Claude HTTP MCP client budget, and wait for the recovered handler before dispatch. Preserve Stop, cancellation, exact identity and artifact checks. Verified with real-process regressions and a real Claude Opus 5.5 Daytona workflow: 125 seconds offline during useful work, original process and lease retained, no failed native tool calls, queued follow-up completed, independently verified ZIP and committed workspace receipts. All current-head CI gates pass and Greptile is 5/5 with all findings resolved. Co-Authored-By: Paperclip <noreply@paperclip.ing>	2026-10-25 09:01:24 -05:00
Devin FoleyandPaperclip	8c6bd5a83b	perf(runner): skip wake payloads in ordinary authority reads (#17600) ... Omit saved wake payloads from ordinary unlocked Native authority reads. Load the current full wake for mail restrictions. Preserve stored rows, locked mutation reads, and current authorization predicates. Verified with full build and typecheck, 2,360 affected tests, real PostgreSQL byte and response checks, counterfactual performance and mail authorization failures, complete exact-head CI, and Greptile 5/5 Medium with no unresolved comments. Co-Authored-By: Paperclip <noreply@paperclip.ing>	2026-10-25 05:36:43 -07:00
Devin FoleyandPaperclip	2e47c42fad	perf(runner): omit unused launch context from tool authority reads (#17591) ... Omit nine unused named launch values from the unlocked Native authority query. Preserve complete wake payloads, other context, result receipts, stored input, and locked execution and mutation readers. Verified with full build and typecheck, 2,359 affected tests across 20 suites, real PostgreSQL byte/retention/cancellation checks, a counterfactual, complete exact-head CI, and Greptile 5/5 Medium with no unresolved comments. An existing cleanup scheduling test passed on CI retry after its suite passed locally with both base and branch source. Co-Authored-By: Paperclip <noreply@paperclip.ing>	2026-10-25 04:21:50 -07:00
Devin FoleyandPaperclip	35d5b0686a	perf(runner): narrow current tool authority reads (#17587) ... Select the current run fields used by Native tool authority without transferring unused saved profiles or output. Preserve full context, receipts, authorization predicates, and locked mutation reads. Verified with full build and typecheck, 2,358 affected tests across 20 suites, a counterfactual real PostgreSQL byte regression, complete exact-head CI, and Greptile 5/5 Medium with no unresolved comments. Co-Authored-By: Paperclip <noreply@paperclip.ing>	2026-10-25 03:45:25 -07:00
Devin FoleyandPaperclip	bf142db65a	perf(server): narrow external review wait context reads (#17562) ... Project current chat authorization fields for external review-wait discovery instead of saved execution input. Preserve typed source bindings, nested question receipts, candidate eligibility, live revocation checks, and stored context. Validation: 181 native chat integration tests, full build and typecheck, exact-head Greptile 5/5 (medium), full green CI, and no unresolved review threads. The full-context counterfactual fails both direct-chat size regressions. Co-Authored-By: Paperclip <noreply@paperclip.ing>	2026-10-25 00:02:32 -07:00
DottaandPaperclip	2a9d527c68	fix: preserve native startup during controller restart (#17511) ... ## Thinking Path > - Paperclip is the open source app people use to manage AI agents for work. > - The native runtime keeps a durable runner alive across controller restarts. > - A restart can begin while a provider session is still opening. > - The old controller fenced read-only run admission before it could publish that prepared session. > - Admission failure then closed the runner that shutdown needed to detach. > - This pull request lets only the existing startup finish admission within the bounded shutdown wait. > - The controller detaches that exact session before it can submit a turn. New work and state changes stay fenced. ## Linked Issues or Issue Description **What happened?** A controller restart during native provider startup could close the prepared runner with `native control-plane run admission failed`. Recovery then found no running process and placed the task in a reconciliation hold. The same admission path follows both fresh startup and replacement after a failed provider resume. **Expected behavior** Shutdown must detach the existing prepared session so the next controller can recover it through the normal identity checks. Shutdown must not admit a new executor, submit a turn, or override an explicit Stop. **Steps to reproduce** 1. Delay a native backend while it opens its provider session. 2. Request controller restart detachment for that run. 3. Let backend startup finish before the 30-second deadline. 4. Observe that read-only admission fails and shutdown reports the run as inactive instead of detached. **Additional context** Related work: #17073 handles remote process-monitor classification; #17459 handles macOS process fingerprints; #17097 covers broader hot upgrade recovery. This change fixes the startup admission fence. It does not relax process identity or provider launch-profile checks. ## What Changed - Separate the read-only admission guard from the guard on control-plane state changes. - Let shutdown await only the startup already registered for the run. Close its admission window when the wait ends. - Reject a new execution after its run is fenced for shutdown. - Detach the prepared session and exit before runtime-question attachment or provider turn submission. - If Stop is pending before or after publication, retain its exact cancellation acknowledgment and cleanup owner across authority reads and runtime-question attachment. - Share one 30-second admission/Stop-settlement deadline across the restart sweep. Report an unsettled run as pending while healthy runs continue hot-restart adoption. - Cover the real runtime and admission path, deadline expiry, new-start rejection, persisted binding checks, and write fences. - Document the bounded startup handoff in the restart ownership contract. ## Verification - Red: the new actual-runtime/admission regression failed on the previous code. Shutdown reported the run as inactive and did not detach it. - Red: review regressions reproduced detach before a post-publication Stop acknowledgment and an actual hot-restart preparation error when startup Stop cleanup timed out. - Green on `e10d0cb238`: 18 startup/restart tests passed, including Stop during authority reads and runtime-question attachment, the real recovery preparation and shutdown coordinator with a stalled Stop plus healthy peer, and the shared sweep deadline. The earlier 36-case Stop/restart selection also passed before this follow-up. - Both complete changed test files previously passed on head `8e9c2610fe`: 857 tests. They used real PostgreSQL 18 with a fresh database per fixture. An earlier local harness attempt reused one database and hit duplicate fixture keys; that harness was corrected before this complete pass. - Real PostgreSQL: 7 admission and revocation tests passed. These cover wrong runner identity, persisted binding mismatch, checkpoint/result rejection, and in-flight write revocation. The local test harness used a fresh Docker PostgreSQL 18 instance because macOS embedded Postgres exhausted the host semaphore limit. Only database provisioning was replaced; assertions and production port code were unchanged. - Transport safety acceptance: the current source transport controlled a real Linux ARM runner and a deterministic Codex test provider in a disposable Debian container. After startup, detach and generic cleanup preserved the process. A new controller authenticated the same PID and provider session. The provider log had exactly one session start and no turn start. Duplicate launch was forbidden, the retained workspace was unchanged, and no stop or suspend command was issued. - The Linux acceptance check tests the shared native transport safety contract. It is not a live Claude response, a hosted Daytona run, or recovery of the original task. Those remain unverified. No original task, sandbox, credentials, or permissions were changed. - `pnpm -r typecheck` and `pnpm build` passed before the review follow-up. Server typecheck passed on current head `e10d0cb238`; current-head CI also passed the full typecheck and build gates. - The full local `pnpm test:run` command was attempted, then stopped after repeated embedded PostgreSQL bootstrap setup failures. That broad local run is incomplete. The current-head four-file Docker PostgreSQL run passed 879 tests, with one existing warm-copy `claim-uncertain` case timing out and recovery failing to import because the temporary provisioning mock omitted a support export. The harness is corrected and affected cases are being rechecked. The timeout is unexplained; it is not being labeled an infrastructure failure. No assertions are skipped by the database provisioning replacement. - All 55 clean-host CI checks passed on current head `e10d0cb238` (2 conditional skips), including all general test shards and native runner verification. Greptile reviewed that exact head at 5/5 with no findings. The previous Paperclip review findings are addressed in [the review response](https://github.com/paperclipai/paperclip/pull/17511#issuecomment-6391520242); its new advisory review remains queued. ## Risks - Admission must stay read-only. All writes retain the original synchronous controller fence, and both admission checks still validate the exact persisted binding. - Startup that exceeds the 30-second shutdown wait still fails closed. It cannot claim a successful detach or start a turn. - No schema migration or provider configuration change is included. ## Model Used OpenAI Codex, based on GPT-6, with reasoning, repository tools, code execution, and test execution. The exact runtime model ID and context window are not exposed in this session. ## Checklist - [x] I have included a thinking path that traces from project context to this change - [x] I have specified the model used (with version and capability details) - [x] I have checked ROADMAP.md and confirmed this PR does not duplicate planned core work - [x] I have searched GitHub for duplicate or related PRs and linked them above - [x] I have either (a) linked existing issues with `Fixes: #` / `Closes #` / `Refs #` OR (b) described the issue in-PR following the relevant issue template - [x] I have not referenced internal/instance-local Paperclip issues or links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip` URLs) - [x] My branch name describes the change (e.g. `docs/...`, `fix/...`) and contains no internal Paperclip ticket id or instance-derived details - [x] I have run tests locally and they pass - [x] I have added or updated tests where applicable - [x] I have updated relevant documentation to reflect my changes - [x] I have considered and documented any risks above - [x] All Paperclip CI gates are green - [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups - [x] I will address all Greptile and reviewer comments before requesting merge --------- Co-authored-by: Paperclip <noreply@paperclip.ing>	2026-10-24 21:05:45 -07:00
Devin FoleyandPaperclip	ef0a8db502	perf(native): narrow reconciliation candidate payloads (#17531) ... Select the complete workspace-sync record and native status wake identifier for reconciliation candidates. Preserve candidate policy, JSON types, full later evidence, and stored data. The committed replay regression includes the real reconciliation scan. Full build, typecheck, 114 focused tests, complete CI, and exact-head Greptile5/5 pass. Co-Authored-By: Paperclip <noreply@paperclip.ing>	2026-10-24 19:01:23 -07:00
Devin FoleyandPaperclip	64a8b927c1	fix(native): narrow committed finalization and cleanup reads (#17525) ... Select fresh metadata for committed finalization and cleanup. Preserve full saved evidence for new finalization, cancelled workspace retention, and legacy Stop. PostgreSQL byte-budget and unchanged-row regressions pass, full CI is green, and Greptile scored the exact head 5/5. Co-Authored-By: Paperclip <noreply@paperclip.ing>	2026-10-24 17:48:47 -07:00
DottaandPaperclip	5c3dce09b5	fix(runner): preserve verified remote artifacts across controller releases (#17512) ... ## Thinking Path > - Paperclip manages AI agents and owns their task authority. > - Remote native agents can keep working while their controller restarts. > - The controller must authenticate the same runner and verify its provider files before recovery. > - The current path compares a retained provider pack with the new controller release. A release change can reject intact files. > - The new controller binary digest can also reject the original daemon during PRP authentication. > - This PR records the admitted release authority in private controller state and uses it for exact process reattachment. ## Linked Issues or Issue Description **What happened?** A remote Claude session started and used tools. After controller shutdown, recovery failed with `runner_remote_provider_artifact_incompatible`. The transport combined stderr into stdout, so the error omitted the verifier reason. The historical rejected manifest is unavailable. This PR reproduces controller release drift as a cause; it does not claim that the historical mismatch is proven. Reaching pack verification implies the earlier exact-process/controller-identity checks passed. That supports a preserved-state recovery path but is not a direct inspection of the deployed volume. **Expected behavior** A compatible, unchanged remote runner can reattach after a controller release changes. Full package hashes, exact process scope, protocol capabilities, and authenticated runner identity must still pass. Fresh launches use the current release. **Steps to reproduce** 1. Verify and admit a remote native session with release A. 2. Preserve its runner process and replace the controller with release B. 3. Reattach the original process. The old path compares its pack with B and fails at `manifest mismatch`. 4. With this fix, the controller reads its saved A authority and verifies all A hashes. Changed files still fail. **Paperclip version or commit** Reproduced from master `470cb34c0e42cb9d0b232d0bcf5d45cc7b0a81ca`; rebased onto `a3675ddcdf`. **Deployment mode** Native remote runner on a Daytona-backed Paperclip Computer. Local acceptance uses isolated Linux containers and actual packaged artifacts. Related work: #17361 and #17448 handle runner upgrade and qualification permissions. #17097 and #17439 add durable controller checkpoints and server adoption. That stack can skip remote artifact preparation with a saved checkpoint. This PR fixes the current file-backed path and retains full provider-pack verification; it has no checkpoint schema or empty-disk controller recovery. ## What Changed - Save the complete verified pack manifest and authenticated runner version/digest after successful session admission. - Bind the receipt to company, agent, workspace, session, runner, environment lease, remote directory, and provider descriptor. Keep it outside guest backup directories. - Reuse the saved authority for exact reattachment. Keep current release selection for fresh launches and explicit session replacement. - Fail closed for mismatched or corrupt receipts. Historical sessions without a receipt retain the current release integrity gate. - Report bounded, redacted verifier output from both transport streams. Warn on receipt write failure while returning the already admitted session to its owner. - Add scope, persistence, replacement, storage failure, and backend wiring regressions. Update recovery documentation and the feature map. ## Verification - Test-first red: the original selection chose release B instead of A after controller recreation. The new receipt regression passes. A separate red test showed the missing stdout diagnostic; it passes after the diagnostic fix. - Authority and diagnostic suites: 49 tests pass. Backend pack, process adoption, and harness persistence selection: 47 tests pass. - Actual Linux provider image: complete A manifest/artifact verification passed; controller source-revision drift failed on the old path; saved A authority passed; a modified ACPX sidecar failed its SHA-256 check. - Actual native Linux runner: authenticated a session, detached the controller, changed the controller manifest and binary, then authenticated the original PID and provider session with saved authority. There were zero duplicate spawns, zero new provider turns, no stop/suspend, and the workspace file remained. This probe used the real runner with a deterministic Codex fixture; it is separate from the real ACPX package integrity proof. - Full workspace typecheck and build passed. The full native executor suite first hit host PostgreSQL semaphore exhaustion. The complete changed files then passed 864/864 tests with separate real PostgreSQL databases in a disposable Linux container. The temporary local fixture changed only database provisioning and used normal repository migrations. Current-head CI also passed the full required test, Runner, browser, typecheck, and build lanes. - `node scripts/check-maps.mjs` and `git diff --check` passed. These structural checks do not prove live recovery. - Current head `48fca2ae33d99f7f6d2fe12f431cf76d25185c70`: 55 successful checks, two conditional skips, no pending or failed checks; fresh Greptile 5/5 with zero findings and zero unresolved review threads. Commitperclip quality review passed. - No original task was retried or changed. Existing Daytona access could not resolve the original sandbox or its image; a fresh staging Claude recovery is not claimed. ## Risks This prevents recurrence for sessions admitted with the new receipt. It does not retroactively recover the historical failed run. Saved authority exists only after this change has admitted a session. It cannot repair an ambiguous historical launch or restore a receipt on an empty replacement controller. A stale protocol or modified pack remains a hard failure. Receipt write errors warn without losing the live session handle, but later recovery still needs matching authority. The broader checkpoint stack changes the same server preparation and runner-artifact option and will require a deliberate integration. ## Model Used OpenAI GPT-6 through Codex, with reasoning, repository tools, and code execution. The runtime does not expose a more specific model ID or context-window size. ## Checklist - [x] I have included a thinking path that traces from project context to this change - [x] I have specified the model used (with version and capability details) - [x] I have checked ROADMAP.md and confirmed this PR does not duplicate planned core work - [x] I have searched GitHub for duplicate or related PRs and linked them above - [x] I have either (a) linked existing issues with `Fixes: #` / `Closes #` / `Refs #` OR (b) described the issue in-PR following the relevant issue template - [x] I have not referenced internal/instance-local Paperclip issues or links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip` URLs) - [x] My branch name describes the change (e.g. `docs/...`, `fix/...`) and contains no internal Paperclip ticket id or instance-derived details - [x] I have run tests locally and they pass - [x] I have added or updated tests where applicable - [x] I have updated relevant documentation to reflect my changes - [x] I have considered and documented any risks above - [x] All Paperclip CI gates are green - [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups - [x] I will address all Greptile and reviewer comments before requesting merge --------- Co-authored-by: Paperclip <noreply@paperclip.ing>	2026-10-24 16:44:50 -07:00
Devin FoleyandPaperclip	470cb34c0e	Read reply repair and ownership evidence without execution payloads (#17501) ... Narrow native reply repair and conversation ownership reads to their consumed evidence while preserving full stored history, result receipts, locks, current authority checks, and publication authorization. Verify successful repair from equivalent unpublished states, exact final replies and decisions, no duplicate repair, preserved history, and 213 recovery/presentation tests. Build/typecheck and all CI pass. Greptile 5/5 Medium. Co-Authored-By: Paperclip <noreply@paperclip.ing>	2026-10-24 15:14:48 -07:00
Nicky Leach	410e5c6eed	fix(native): use current authority for warm plugin completion (#17444)	2026-10-24 10:54:40 -07:00
DottaandPaperclip	7ae81c9fa7	fix(slack): support rich questions and complete review delivery (#17255) ... ## Thinking Path > - Paperclip is the open source app people use to manage AI agents for work. > - Questions and review decisions must work in the conversation where a task started. > - Slack omitted question context and did not publish several review kinds. > - Some answers saved in Paperclip also lost their authorized continuation or their final Slack reply. > - A settled card and a successful run did not prove that the user received the result. > - This pull request preserves complete questions and follows the existing answer and delivery receipts through continuation. > - Users can read the request, submit an authorized decision, and receive the resumed task's result in the same conversation. ## Linked Issues or Issue Description Refs #17045 and #17218. **What happened?** Slack question cards could omit instructions and editable starting text. Checkbox reviews, item verdicts, task suggestions, and connection requests had no publication path. Complex question answers submitted in Paperclip could fail continuation authorization. Several review continuations completed without delivering their result to Slack. **Expected behavior** Show the actual question and context. Use native Slack controls when they preserve the form contract. Otherwise provide an explicit Paperclip review link. Persist one authorized response, resume through the existing delivery path, settle the card, and deliver the useful result to its originating conversation. **Steps to reproduce** 1. Start a task in Slack and ask a text or choice question with instructions and help text. 2. Submit native text and choice responses, then submit a complex form through Paperclip. 3. Accept a checklist, submit item decisions, select suggested tasks, or decline a connection request. 4. Inspect the saved answer, continuation run, original Slack card, and final Slack reply independently. ## What Changed - Preserve full prompts, context, descriptions, recommendations, help, and editable starting text. Use direct buttons for short choices, inline searchable selects for longer lists, and native checkboxes with explicit submission for multiple choices. - Add native custom-answer and validated-text modals, ordinary confirmation buttons, checklist decisions, per-item verdicts with reasons, suggested-task creation/dismissal, and connection decline. Keep governed approvals, permission grants, and forms that cannot be represented faithfully in the full Paperclip review surface. - Keep Slack-specific canonical-validation feedback in its owning platform module. Shared callbacks delegate without interpreting provider presentation. - Reuse the existing canonical interaction transactions, callback receipts, publication queue, and continuation delivery. Share ordinary confirmation handling across Telegram and Slack. Recheck current authorization and commit response receipts atomically. - Settle cards with the saved answer and remove stale controls. Ignore passive Slack link callbacks so opening a task does not display a false answer error. - Validate exact multi-select receipt mappings during native continuation. Recover automation-origin connection replies from their published prompt after validating the durable connection receipt. - Keep oversized multi-select handoffs free of unused native tokens, and retain the complete Paperclip form for 101–128 choices plus Other. Make the original-conversation audience explicit before submitting a Slack modal. - Add rollback, provider serialization, callback, continuation, and negative authorization regressions. Update the connector playbook and feature/access maps. No React or application UI changes are included. - Add a durable Q01–Q11 qualification index and provider coverage matrix. Require distinct functional, good-experience, and best-available-control assessments; real unanswered/answering/settled evidence; saved results, continuation and navigation proof; and retained failures. Mark other providers unaudited rather than assuming Slack parity. ## Verification Candidate: `e0017d446b1016a38d65382366cd1408cce33039`. The eleven-core-format live Slack gallery is pinned to `c3d458b2a06b660448940fd8cf33c5906f0058d5`; subsequent boundary fixes and the sharing notice have automated verification, not new live screenshots. - Real Slack UI testing covered all 11 formats: text, closed choice, long single select, multiple choices, choices with a custom answer, pattern-validated text, confirmation, checklist, item verdicts, suggested tasks, and connection requests. Each has unanswered/answering/answered screenshots as applicable, an inspected saved result, one continuation, and an individual experience review in the local HTML gallery. - The dedicated private QA app/channel used signed callbacks to the local candidate. A separately approved password-protected, read-only preview proved connection-review, suggested-task review, and created-task navigation. Anonymous access, writes, and credential routes were denied. No OAuth grant was attempted. - Real testing exposed and repaired a multi-select continuation failure and a misleading error on link-button clicks. Failed attempts remain in the evidence. The final navigation replay opened the exact pending connection request and declined it in Slack without granting access. Suggested-task creation produced the selected child with the correct parent and description. - Final review-fix verification: **32 form tests**, **28 provider/form-rendering tests**, **30 publication tests**, and **171 native continuation/authorization tests** passed. Earlier **3 atomic-resolution rollback**, **9 targeted callback/publication/Telegram**, and **28 review-continuation** cases passed. The final Slack/Teams modal subset also passed. The automation-origin connection cases, 101/128 custom-choice cases, and oversized multi-select continuation reproduced before their fixes and passed afterward; failing logs remain retained. These counts describe relevant runs, not a reliability percentage. - CI on `b5885b85fd` exposed a test fixture that assumed every Slack modal block was an input; the new sharing notice correctly renders a non-input block. The fixture now selects input blocks safely. The exact signed-modal correction/one-continuation test passed locally, together with 14 Slack form/modal tests. The failing CI log and its specific cause remain recorded. - `pnpm -r typecheck` and `pnpm build` passed. Server typechecking was repeated after the final source changes. Map and module-boundary checks and `git diff --check` passed. - The full `pnpm test:run` was attempted and stopped after repeated embedded PostgreSQL semaphore exhaustion on this host. Its 1,395-test chat suite found two stale native-control assertions; both were corrected and re-tested in a focused run. Focused database suites used separate disposable databases on existing local PostgreSQL. The full suite is not claimed green; new-head CI must complete before merge. - Final-head CI passed on `e0017d446b1016a38d65382366cd1408cce33039`: all test/build jobs and required `ci / verify` and `ci / e2e` gates are green ([run](https://github.com/paperclipai/paperclip/actions/runs/40115430194)). Greptile and Ponytail both reviewed this exact head at 5/5, the security scan passed, and all review threads are resolved. - All three QA app callbacks were restored to staging. Both temporary tunnels and local proxies were closed. The local endpoint was archived and its local credential copies removed. The candidate app was stopped. Limits: provider execution used a deterministic Claude protocol fixture, not an LLM. This is local real-provider UX proof, not deployed staging or broader Codie/Claude qualification. The public preview intentionally blocked ancillary artifact routes, so its destination pages could show a partial-history warning. The complete permission-grant flow and every oversized/mixed-form branch were not driven manually. Earlier fixture, test, and provider failures remain recorded. ## Risks - New reply routes require durable origin proof. Incorrect receipt matching could lose a reply or route it incorrectly. Tests cover missing, forged, mismatched, and revoked authority. - Governed forms keep their Paperclip resolution checks. This change does not grant new approval authority to Slack. - Existing completed review results can become deliverable through the repaired publication path without another provider run. - No schema, lockfile, workflow, public task-status model, or runtime-instruction change is included. This branch is not deployed. ## Model Used OpenAI Codex, GPT-6 family, with code execution and tool use. The exact backend model ID and context-window size are not exposed in this session. ## Checklist - [x] I have included a thinking path that traces from project context to this change - [x] I have specified the model used (with version and capability details) - [x] I have checked ROADMAP.md and confirmed this PR does not duplicate planned core work - [x] I have searched GitHub for duplicate or related PRs and linked them above - [x] I have either linked existing issues or described the issue in-PR following the relevant issue template - [x] I have not referenced internal/instance-local Paperclip issues or links - [x] My branch name describes the change and contains no internal Paperclip ticket id - [x] I have run focused tests locally and they pass - [x] I have added or updated tests where applicable - [x] I have updated relevant documentation to reflect my changes - [x] I have considered and documented any risks above - [x] All Paperclip CI gates are green on the new head - [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups on the new head - [x] I will address all Greptile and reviewer comments before requesting merge --------- Co-authored-by: Paperclip <noreply@paperclip.ing>	2026-10-24 10:29:15 -07:00
Nicky Leach	62f60bf158	Measure first deliverable text in native run traces (#17434)	2026-10-24 09:40:08 -07:00
DottaandPaperclip	71c04c0bfb	fix: stop idle environment cleanup polling (#17145) ... ## Thinking Path > - Paperclip is the open source app people use to manage AI agents for work. > - Agent environments can leave pending teardown or unverified provider resources. > - Recovery must preserve those resources until ownership and workspace safety allow cleanup. > - Empty maintenance scans keep an idle instance and its database active. > - The existing rows, transaction signals, and scheduler can represent the actual recovery obligation. > - This pull request schedules pending cleanup and historical verification only while work remains. > - An empty or fully verified instance stops these scans without losing cleanup recovery. ## Linked Issues or Issue Description **What happened?** The server scanned pending environment cleanup on its maintenance tick. The run reaper also scanned it even when it recovered no runs or active leases. Historical resource verification scanned every five minutes, including when all history already had valid cleanup proof. **What did you expect?** Writes should wake cleanup. Pending rows, deferred orphan buffers, and unverified history should retain recovery deadlines. When none remain, these workers should make no periodic database or provider calls. **Steps to reproduce** Start a configured instance with no pending leases and fully verified history. Leave it idle. Observe repeated pending-cleanup and historical-verification reads from the maintenance paths. Related: #17106 supplies the preceding login-cleanup migration. #13523 improves lease-reaper query indexes. #16809 addresses reusable-sandbox recovery authority. This PR keeps those authority checks in their existing services. ## What Changed - Register two workers with the existing delivery coordinator and shared scheduler. Remove their unconditional maintenance-tick calls. Run the reaper's inline pending cleanup only after it recovers actual work. - Add commit-aware signals to the audited lease and custom-image writers. Existing transactions notify directly; other writers use one small transaction helper. No tables or migrations are added. - Derive pending cleanup deadlines from the existing row backoff and retry or claim metadata. Retain a historical retry only while an unverified candidate exists. - Register unwritten orphan buffers across runtimes that share the database handle. Buffer registration wakes recovery without a database connection. Load the existing spool at startup and retry failed or capacity-limited loads while needed. - Isolate spool failures per runtime. Attempt all buffers and persisted pending rows, then retain a retry for any failed spool. - Document producer coverage, idle behavior, and remaining blockers. Update the sleep inventory. - Repair the inherited CSS-recovery E2E test: the current build no longer emits task-page CSS. Exercise the actual lazy environment stylesheet, preserving real network failure, recovery, and bounded reload assertions. ## Verification October 24 integration update: merged current master and resolved the runtime/spool conflicts. Preserve serialized ingestion of records appended after startup. Plugin replacement failures now register deferred recovery with an idle hold; concurrent callers share one persistence attempt. The producer audit includes this new writer. - Focused cleanup selection: 270 tests now pass across five suites. The initial run lacked a built plugin SDK and executed no tests; building the SDK fixed setup. The new concurrent-flush assertion then reproduced duplicate rows; a single-flight guard fixed it and all 18 plugin integration tests passed on rerun. - Server typecheck passed. After review fixes, all 211 tests across the cleanup worker, real orphan spool, environment runtime, and plugin integration suites passed. These overlap the earlier focused selection. The rate-limit test initially expected a write after twenty idle minutes to wait; corrected it to assert that subsequent writes cannot accelerate the five-minute cadence. - Review fixes preserve retries for unreadable spool directories/records, keep historical provider checks off the startup wait while joining them at shutdown, and restore their independent five-minute minimum spacing. The complete [CI matrix](https://github.com/paperclipai/paperclip/actions/runs/40108905033) passed on final commit `79ae1589c3c7b924db4bedb337d0c7ed3d95020b`, including all E2E shards, server/workspace tests, runner checks, typecheck, build/public-install verification, and security checks. - CI found a stale E2E asset matcher: `issue-detail-*.css` is no longer emitted. Both corrected browser tests passed against a fresh production UI build and disposable local instance. Fresh Greptile review is 5/5 on that same final commit, with all review threads resolved. Previous implementation verification: - `pnpm -r typecheck` and `pnpm build` passed. - New PostgreSQL worker suite: 12 tests passed. Covers quiet configured state, verified history, writes, outer commit and rollback, retry deadlines, restart, drain, deferred orphan buffers, spool failure, pagination, provider uncertainty, shutdown, and the idle run-reaper path. - Worker and environment runtime suites after review fix: 183 tests passed. A new assertion reproduced buffer starvation before the fix. Updated transaction fault injection and isolated simulated-instance database handles. Server typecheck also passed after the fix. - Run-recovery suites: 58 tests passed. Pending-cleanup suite: 38 tests passed after updating the logging fixture to seed real orphan recovery; an idle reaper no longer invokes cleanup. - Stop and workspace-recovery integration selection: 268 tests passed; two live-provider tests skipped by their environment gate. This overlaps the worker suite and is not an additional unique-test count. - Started the full local `pnpm test:run`, then stopped that older duplicate run after CI found the fixture mismatch. The corrected 38-test suite passed locally. The full sharded [CI matrix](https://github.com/paperclipai/paperclip/actions/runs/39678174479) passed on final commit `fc0ff3c4554ca4190a8b0b81ec06ef7065b8ad2c`, including build, typecheck, runner, server, workspace, and E2E checks. This is not a claim that the local full run completed. ## Risks - Missing a future producer signal could delay discovery until restart. The producer audit is documented in `doc/idle-environment-cleanup.md`. Independent SQL writers and another server process are outside the existing process-local notification contract. - Historical candidates blocked by ownership or provider uncertainty keep a five-minute retry until they can be verified. Provider destruction, claim fencing, Stop retention, and workspace safety remain controlled by their existing services. - This does not remove orphan-active discovery or legacy shutdown settlement from run recovery. Active custom-image expiry is also still periodic. External wake coverage does not change. - Local tests prove these workers become quiet and recover. They do not establish deployed instance suspension or fleet cost savings. ## Model Used OpenAI Codex (GPT-6), with code execution and reasoning. The exact serving model ID and context size were not exposed. ## Checklist - [x] I have included a thinking path that traces from project context to this change - [x] I have specified the model used (with version and capability details) - [x] I have checked ROADMAP.md and confirmed this PR does not duplicate planned core work - [x] I have searched GitHub for duplicate or related PRs and linked them above - [x] I have either (a) linked existing issues with `Fixes: #` / `Closes #` / `Refs #` OR (b) described the issue in-PR following the relevant issue template - [x] I have not referenced internal/instance-local Paperclip issues or links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip` URLs) - [x] My branch name describes the change (e.g. `docs/...`, `fix/...`) and contains no internal Paperclip ticket id or instance-derived details - [x] I have run tests locally and they pass - [x] I have added or updated tests where applicable - [x] I have updated relevant documentation to reflect my changes - [x] I have considered and documented any risks above - [x] All Paperclip CI gates are green - [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups - [x] I will address all Greptile and reviewer comments before requesting merge --------- Co-authored-by: Paperclip <noreply@paperclip.ing>	2026-10-24 09:04:49 -07:00
Nicky Leach	6b4bdc515b	Fix GitHub ownership checks for warm plugin tasks (#17417)	2026-10-24 08:26:28 -07:00
DottaandPaperclip	87bf89756e	fix: support Daytona runner upgrades and ignore obsolete Claude options (#17361) ... ## Thinking Path > - Paperclip is the open source app people use to manage AI agents for work. > - Existing Claude and Codex agents can upgrade to Paperclip Runner. > - A Daytona computer needs platform qualification before Runner becomes its default. > - The upgrade notice required that default, so it hid the action that could start qualification. > - Saved Claude turn limits also caused conversion to fail even though Runner can run without them. > - This pull request verifies the computer on click and ignores obsolete Claude options with a warning. > - Agents retain their model, account, environment, instructions, and permission policy. ## Linked Issues or Issue Description Related: #17122. **What happened?** A legacy Claude agent on a Daytona snapshot had no upgrade button until its environment had platform qualification. A saved `maxTurnsPerRun: 1000` then caused conversion to return HTTP 422. **Expected behavior** The upgrade action verifies a supported Daytona computer and converts the agent. Unsupported tuning options produce a visible warning and do not block execution. **Steps to reproduce** 1. Create a legacy Claude agent with `maxTurnsPerRun: 1000` on an active Daytona snapshot. 2. Open Runtime before the environment has platform qualification. 3. Try to upgrade to Paperclip Runner. **Paperclip version or commit** After #17122, reproduced against `9c442cf48e`. ## What Changed - Offer upgrade on probe-capable Daytona snapshots and immutable sandbox images. Perform the public environment probe only after a click. Save after fresh adapter discovery confirms support. - Resolve the actual computer for explicit, instance-default, and hidden managed environments. Preserve pending edits and reject stale probe results. - Ignore Claude `maxTurnsPerRun`, `chrome`, `warmHandleIdleMs`, and `acpWarmHandleIdleMs`. Return structured warnings from create, hire, and update. Show warnings in Runtime and after a save. - Keep validation for commands, credentials, filesystem, network, and permission settings. - Retain the legacy turn limit in the existing live conversion fixture. Update regression tests, upgrade stories, and capability maps. ## Verification - Red: the old route returns HTTP 422 for the saved turn limit; the old form hides the Daytona upgrade notice. - Green: 417 focused server and form tests pass. A further 188 tests pass after the review fixes. Qualification coverage includes failed probes, unsupported targets, changed settings, managed defaults, unsaved environment variables, and forced Kubernetes targets. - `pnpm -r typecheck` and `pnpm build` pass. Token gates, map checks, map tests, and Storybook catalog checks pass. - Real local Claude Opus 5.5 conversion and task pass, with the downloaded artifact checked against seeded source bytes, SHA-256, and Git commit. - Real browser upgrade and full Claude Opus 5.5 task on a disposable named Daytona snapshot pass at `b81cec7d8c`. The saved agent retains its model, high effort, credentials, timeout, and grace settings while dropping the turn limit with a visible warning. Exactly one successful run completed the task. The downloaded artifact matched independently seeded source bytes, SHA-256, and Git commit; the source was unchanged, no interactions remained pending, and the delivery link survived a browser reload. The snapshot used current runtime assets built from public source. The supplied Daytona account could not access the original staging snapshot, so this verifies an equivalent local fixture rather than that exact snapshot. Disposable test resources were cleaned up. - Earlier live attempts remain recorded: an image-based sandbox creation failed, and the first named-snapshot probe returned failure with unresolved provisional cleanup identity. Later named-snapshot probing and the task succeeded; the initial creation failures are not attributed to this PR or declared resolved. A separate attempt using the Oct 18 cached runtime failed the current provider-pack compatibility check; rebuilding the runtime from matching public source removed that mismatch. Owned resources were identified and cleaned up, with diagnostic databases retained. - 54 checks passed at `b81cec7d8c`, with no failed checks; Greptile and Paperclip Review both scored 5/5, with both review threads resolved. Master advanced during the live proof, so the branch was rebased with both sides of additive import/test conflicts retained. On the rebased head `2b74222b94`, 472 focused tests, UI typecheck, and UI build pass. All required CI gates pass; Greptile and Paperclip Review both score 5/5 on this head, with no unresolved review threads. The PR is mergeable. The serial local `pnpm test:run` was stopped after the CI test lanes passed; that local run is not claimed as a pass. ## Risks - An explicit upgrade can allocate a temporary probe sandbox and take several minutes. Probe failures leave the agent on its existing runner. - Ignored options no longer enforce a turn cap, Chrome integration, or legacy idle-time tuning. The UI warns about each active ignored option. - Unsafe or ambiguous execution settings still fail validation. This change does not weaken environment qualification or runtime artifact checks. ## Model Used OpenAI Codex, GPT-6, with reasoning, code execution, and browser tools. The exact deployment model ID and context-window size are not exposed in this session. ## Checklist - [x] I have included a thinking path that traces from project context to this change - [x] I have specified the model used (with version and capability details) - [x] I have checked ROADMAP.md and confirmed this PR does not duplicate planned core work - [x] I have searched GitHub for duplicate or related PRs and linked them above - [x] I have either (a) linked existing issues with `Fixes: #` / `Closes #` / `Refs #` OR (b) described the issue in-PR following the relevant issue template - [x] I have not referenced internal/instance-local Paperclip issues or links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip` URLs) - [x] My branch name describes the change (e.g. `docs/...`, `fix/...`) and contains no internal Paperclip ticket id or instance-derived details - [x] I have run tests locally and they pass - [x] I have added or updated tests where applicable - [x] I have updated relevant documentation to reflect my changes - [x] I have considered and documented any risks above - [x] All Paperclip CI gates are green - [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups - [x] I will address all Greptile and reviewer comments before requesting merge --------- Co-authored-by: Paperclip <noreply@paperclip.ing>	2026-10-24 07:59:18 -07:00
Nicky Leach	aa0037a137	Support Codex warm plugin task reuse and recovery (#17390)	2026-10-23 19:14:14 -07:00
Nicky Leach	a978ecadef	Honor negated attachment requests in task completion (#17399)	2026-10-23 17:38:50 -07:00
DottaandPaperclip	bf223596ab	fix(runner): bootstrap fresh sessions in replacement sandboxes (#17320) ... Reuse the untouched-session proof and atomic directory claim when a sandbox replacement carries a provider session that has never run. Retain verified restore for saved backups and all prior or ambiguous session activity. Co-Authored-By: Paperclip <noreply@paperclip.ing>	2026-10-23 15:35:24 -07:00
Devin FoleyandPaperclip	b5bf86ea09	Clear process identity when settled native runs stop (#17374) ... ## Thinking Path > - Paperclip is the open source app people use to manage AI agents for work > - Each heartbeat run stores the process identity of its runner in `heartbeat_runs.process_pid`, `process_group_id` and `process_started_at` > - Only cancellations (`release_run_resources`), restart recovery and heartbeat recovery cleared these fields > - Failed native runs take the `schedule_retry` path, so they kept a PID after the run finished, for weeks > - Liveness checks for old runs then depend on PID-reuse defenses, and code that reads a set PID as "running" is misled > - This pull request releases the process identity of settled native runs when the process is confirmed gone, and backfills old sandbox rows > - The benefit is that a finished run no longer looks like it owns a live process, while live, warm and retrying processes keep their identity ## Linked Issues or Issue Description Refs #17358. Bug report described in-PR (bug report template). **What happened?** On one instance, 16 of 23 old native workspace sync folders belonged to failed or cancelled runs that finished more than a week earlier and still had `process_pid` set. The PID is written when the run's process starts (for remote targets it is the sandbox PID). The status arbiter clears it only through `release_run_resources`, which only cancellations emit. Failed native runs take `schedule_retry`, and other terminal paths (finalization reconciler, restart recovery terminal failures, watchdog timeouts) do not clear it either. **Expected behavior** When a run is terminal and its process is confirmed gone (or no longer owned), the process identity is cleared. A process that may still be alive keeps its identity. **Steps to reproduce** 1. Run a native task whose provider turn fails, so the arbiter decides `run_failed_partial_evidence_preserved` with a `schedule_retry` effect. 2. Wait for the run to finish and the runner to exit. 3. Read the run row: `status = 'failed'` and `process_pid` / `process_group_id` / `process_started_at` are still set. **Paperclip version or commit:** `master` at 75fcb0b3fc. **Deployment mode:** any. **Agent adapter(s) involved:** native runtime (`paperclip_runner`); local and sandbox targets. ## What Changed - `releaseSettledNativeRunProcess` (in `native-local-process-stop.ts`) clears `process_pid`, `process_group_id` and `process_started_at` of a native run under a row lock, only when all of these are true: - the status is `failed`, `cancelled`, `timed_out` or `interrupted`, and `finished_at` is set; - the finalization coordinator is absent, `committed` or `terminal_failure` (a `retryable_failure` same-run retry keeps the existing heartbeat recovery path; unfinished finalization keeps its identity); - the run has a session checkpoint or provider evidence, so native session resume never mistakes it for an unused bootstrap; - local target: every lease is released without failed cleanup, the latest `native.process_identity_recorded` event names this host and the same PID/group, and the PID and group probe absent. The release writes the existing `native.local_process_stopped` receipt in the same transaction, so `hasNativeLocalProcessStop`, `readNativeLocalProcessStop`, explicit continuation and acknowledged Stop keep their proof; - sandbox target: every lease has a remote termination receipt (sandbox PIDs are never probed on this host). - Succeeded runs keep their identity: a warm runner can serve the next turn, and chat retry matches warm predecessors by PID. - The heartbeat executor calls the release after lease and scratch cleanup at a terminal boundary (not when a same-run resume, workspace finalization or held ownership is pending). - Background work stays idle (see `rules/sleep-aware-background-work.mdc`): - Trigger: the executor settlement calls `settleNativeRunProcess`. If the release is not ready yet (process still alive, local lease not released, remote termination receipt missing), the run goes into an in-memory pending set. - Startup: the first `reapOrphanedRuns` pass after boot runs `discoverSettledNativeRunProcesses` once, in pages of 50, over the durable rows. This reconstructs work after a restart and covers terminal transitions outside an executor (reconciler, restart recovery, watchdog, timeouts). - Retry: later passes call `retryPendingSettledNativeRunProcesses` only for pending runs. It makes no database call when the set is empty. A run leaves the set when it is released, becomes ineligible, or reaches 20 attempts. - Runs that this process still executes are skipped. - Stop receipts now also record `processStartedAt`. `withReleasedNativeRunProcess` restores a released identity from the latest stop receipt. Retained session cleanup (`reconcileRetainedNativeSessionCleanup`) and warm transition restart checks use it. Quiescent runnerd state recovery reads the stop receipt when the prior run's identity was released. Without a receipt, all three still treat the identity as unproven. - Migration `0377_clear_settled_native_run_process_identity` backfills sandbox runs (without bumping `updated_at`) with the same rules: native, settled status, `finished_at` older than 1 day, settled coordinator phase, checkpoint or provider evidence, and at least one lease where every lease has a valid remote termination receipt. The snapshot is carried forward as `0377_snapshot.json`. - Not changed: legacy (non-native) runs. Case handoff release, scratch cleanup and conversation continuation read the terminal row's local PID/group as process-tree absence evidence, so clearing them needs separate work. `release_run_resources` cancellation behavior and `native_run_finalizations.controller_*` fields (they track the server controller, not the run process) are unchanged. ### Migration margin The 1-day margin is defense in depth. The real proof is the remote termination receipt: the provider confirmed that the sandbox stopped or was destroyed. One day is far longer than lease release, sandbox stop, restart recovery takeover and the finalization reconciler sweep, so no in-flight teardown or same-run recovery can still read these rows. Local rows are not backfilled in SQL: only the host that recorded the process can verify that it stopped and write the stop receipt. The runtime sweep releases them on that host. ## Verification - `pnpm exec vitest run src/__tests__/native-settled-process-release.test.ts` (new, 20 tests): release with a stop receipt and restore of the identity from it; `cancelled`/`timed_out`/`interrupted`; live process kept, then released after exit; kept for succeeded, `retryable_failure`, `workspace_finalizing`, unreleased local lease, another host, no evidence, unconfirmed sandbox, mixed leases; sandbox release with receipts; startup discovery paging and skip; pending retry; retry cap; no database access while nothing is pending; `reapOrphanedRuns` discovery, then retry after the process exits; executor release for a failed native run and no release for a succeeded run. - `native-provider-failure.integration.test.ts`: a real `schedule_retry` decision (`run_failed_partial_evidence_preserved`) leaves the failed run with its PID after finalization, and the release then clears it and the stop receipt reads back. - `native-session-executor.test.ts`: quiescent recovery and retained session cleanup accept a released identity with a stop receipt and reject one without a receipt. - `packages/db` `client.test.ts` migration rule: the backfill does not set `updated_at`. - `native-finalization-migration.test.ts`: migration 0377 clears only old settled native sandbox rows with confirmed termination (15 fixtures, including recent, succeeded, running, legacy, unsettled phases, no evidence, unconfirmed or local leases, no lease). - Related suites, all passing: `pnpm exec vitest run` on heartbeat-process-recovery, native-workspace-sync-retention(-config), native-finalization-{migration,settled-candidates,recovery}, chat-failed-run-retry-boundary, acknowledged-native-stop, explicit-native-continuation, conversation-continuation, native-session-resume, native-run-finalizer-telemetry, native-session-executor, native-safe-replacement, native-finalization-reconciler-timing, native-restart-recovery, native-finalization-recovery-state, run-lifecycle, agent-instruction/directory working copies, heartbeat-case-handoff (1920 tests across 23 files). - `pnpm run typecheck` in `server/`: passes. `pnpm run check:migrations` and the snapshot drift test in `packages/db`: pass. - Mutation checks (each reverted alone; a test failed every time): executor call, startup discovery, pending retry in `reapOrphanedRuns`, retry cap, pending-set cleanup on retry, start time in the stop receipt, retained cleanup receipt fallback, coordinator phase guard, succeeded exclusion, liveness probe, host check, remote receipt check, provider-evidence guard, local lease check, quiescent recovery receipt fallback, migration margin, migration NULL-safe receipt check, migration phase guard. The NULL-safe check came from a real bug the migration test found. The warm transition restart call site has no direct test: that path has no existing fixture. It uses the same tested helper. - Not run: the full server suite and e2e tests. ## Risks - Behavior change: more native runs now have a null `process_pid` after they settle. Every native reader was checked: explicit continuation, acknowledged Stop and agent stop use the stop receipt for null identities; cancelled-startup detection also requires no process events, so a released run is not mistaken for a cancelled startup; native session resume selection is protected by the evidence guard; chat retry reads its warm-predecessor PIDs from succeeded runs, which are not released. - A recycled local PID keeps a row unreleased (conservative), and sandbox runs from providers without termination receipts keep their identity. - Background cost: one paged discovery at startup. After that, only pending runs are checked, at most 20 times each. With nothing pending there is no recurring query. - A transition outside an executor that happens after startup, with no executor settlement, is released at the next startup discovery. - Migration: a data-only `UPDATE` on `heartbeat_runs` with a selective `WHERE`; it passes the migration safety check. It is safe to re-run. ## Model Used Claude Opus 5.5 (`claude-opus-5-5`), 1M context, through Claude Code with tool use. ## Checklist - [x] I have included a thinking path that traces from project context to this change - [x] I have specified the model used (with version and capability details) - [x] I have checked ROADMAP.md and confirmed this PR does not duplicate planned core work - [x] I have searched GitHub for duplicate or related PRs and linked them above - [x] I have either (a) linked existing issues with `Fixes: #` / `Closes #` / `Refs #` OR (b) described the issue in-PR following the relevant issue template - [x] I have not referenced internal/instance-local Paperclip issues or links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip` URLs) - [x] My branch name describes the change (e.g. `docs/...`, `fix/...`) and contains no internal Paperclip ticket id or instance-derived details - [x] I have run tests locally and they pass - [x] I have added or updated tests where applicable - [x] I have updated relevant documentation to reflect my changes - [x] I have considered and documented any risks above - [ ] All Paperclip CI gates are green - [ ] Greptile is 5/5 with no open P2s, recommendations, or follow-ups - [ ] I will address all Greptile and reviewer comments before requesting merge --------- Co-authored-by: Paperclip <noreply@paperclip.ing>	2026-10-23 15:09:43 -07:00
Nicky LeachandPaperclip	a3e8fa568a	Reduce repeated work during plugin Runner admission (#17377) ... ## Thinking Path > - Paperclip manages agents and their execution authority. > - A plugin can host Runner tasks on a persistent execution host. > - Admission checks must observe current lifecycle state and credentials. > - The current runtime reader also resolves files, skills, and connections for each check. > - Some providers also repeat the same project authentication check during submit. > - This pull request adds a compact fresh reader and an explicit submit-time validation contract. > - Providers can remove repeated work while Core keeps lease and scope checks. ## Linked Issues or Issue Description **What existing behavior does this improve?** Plugin Runner startup before task submission. **Current behavior** One measured startup made 30 full runtime reads during bootstrap. These reads took 5.759 seconds. Each guard can resolve instructions, skills, and connection assignments even when it only needs current identity and lifecycle state. Providers that already enforce project authentication in submit must also perform a separate Core preflight. **Proposed behavior** Use a lifecycle-owned runtime identity reader for guards. Keep the full runtime reader for synchronization inputs. A trusted provider can declare `projectAuthCheckAtSubmit: true` in its prepared result. Core pins the exact configuration, provider, and project set on the lease. The provider must reject authentication conflicts before credential installation or task start. Providers that omit the flag retain the existing preflight. **Reason and benefit** Estimated savings with a paired consumer: 4–5 seconds from compact runtime checks, plus roughly 0.5–0.9 seconds from removing the duplicate authentication operation. These estimates overlap and are not a measured deployed result. Refs #17367 for the separate run-log HEAD optimization; this PR does not duplicate it. **Breaking changes** No migration. The SDK adds a host method and an optional prepared-result field. Consumers that use them require this Core host version. Older providers retain their existing flow. ## What Changed - Add `agents.getRuntimeIdentity` across SDK, RPC, host service, and test fixtures. - Reuse the existing company, plugin ownership, readiness, and capability checks. Read lifecycle state and protected instance secrets fresh on every call. - Skip instruction, organization, skill, and connection hydration in the compact reader. - Allow explicit submit-time authentication enforcement, with prepared scope pinned and checked again at dispatch. - Emit fixed preparation, project-auth, submit, and connection timing phases. ## Verification - 72 targeted SDK capability, plugin task-owner, and environment-task mediator tests passed. - 33 real embedded-Postgres lifecycle and secret tests passed, including pause, content revision, company isolation, plugin disablement, and secret rotation. - SDK and server TypeScript checks passed. Local Runner/eval TypeScript outputs were built to satisfy server type resolution. - Local Postgres required missing library aliases in ignored dependencies; no product source was changed for that repair. - Full repository suites are delegated to GitHub CI. No live rollout or speedup claim. ## Risks The submit-time flag delegates enforcement to a trusted provider. It is not proof that prepare already checked authentication. The provider must check before VM credential installation or task admission. Core still checks exact prepared scope, active lease, run identity, credential type, and dispatch fencing. Existing providers keep the separate check. Roll back a paired consumer before rolling back this host. ## Model Used OpenAI GPT-6 (Codex), with code execution and repository tools. Exact deployment build and context-window size are not exposed. ## Checklist - [x] I have included a thinking path that traces from project context to this change - [x] I have specified the model used (with version and capability details) - [x] I have checked ROADMAP.md and confirmed this PR does not duplicate planned core work - [x] I have searched GitHub for duplicate or related PRs and linked them above - [x] I have described the issue in-PR following the relevant issue template - [x] I have not referenced internal/instance-local Paperclip issues or links - [x] My branch name describes the change and contains no internal ticket id - [x] I have run tests locally and they pass - [x] I have added or updated tests where applicable - [x] I have updated relevant documentation to reflect my changes - [x] I have considered and documented any risks above - [x] All Paperclip CI gates are green - [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups - [x] I will address all Greptile and reviewer comments before requesting merge Co-authored-by: Paperclip <noreply@paperclip.ing>	2026-10-23 14:54:25 -07:00
Devin FoleyandPaperclip	f73ace9f1a	Clear stale native recovery state so closed work expires (#17359) ... ## Thinking Path > - Paperclip is the open source app people use to manage AI agents for work > - Native runs keep a finalization row, and tasks can keep recovery actions while work is stuck > - Git cache expiration and native harness backup expiration read these rows to decide if closed work is still live > - Commit paths never cleared `native_run_finalizations.recovery_state`, so committed rows kept `resuming_session` forever > - Recovery actions on done or cancelled tasks also stayed active when the close did not go through the issue routes > - So workspaces and backups of tasks that closed weeks ago stayed live and used disk space > - This pull request clears the stale state at commit, backfills old rows, resolves stale recovery actions on closed tasks, and lets the two expiration jobs ignore settled state on closed trees > - The benefit is that closed work expires on schedule, while live leases, unsettled phases, unverified owners, and in-flight system recovery still keep it ## Linked Issues or Issue Description Refs #17248 **What happened?** On one instance, Git cache expiration and native harness backup expiration kept the workspaces and backups of tasks that were done for more than 7 days. Three kinds of stale state caused this: 1. 51 `native_run_finalizations` rows had `phase = 'committed'` and `recovery_state = 'resuming_session'`. The commit writes (status decision commit, attention replay, result persistence, and the finalizer claim) never cleared `recovery_state`. No reader uses `recovery_state` on a row that has a result, except the expiration predicates. 2. Rows with `phase = 'terminal_failure'` and `recovery_state = 'blocked'` (or NULL) are permanent states. Nothing clears them, and continuations are refused for closed tasks. 3. `issue_recovery_actions` with status `active` or `escalated` stayed open after the source task became done or cancelled. Only the issue routes cancel them at close. The periodic sweep `reconcileActiveRecoveryActions` skipped every action unless `wakePolicy.type` was a bounded owner policy or the owner was the board. Agent-owned `resume_native_run` actions (which use `wakePolicy.kind`) and system-owned actions were never resolved. **Expected behavior** When a task tree is closed for the configured time, its Git cache and native backup expire. Only live state keeps them: a held finalization lease, an unsettled finalization phase, an unverified native workspace owner, or system recovery that is scheduled, running, or awaiting evidence. **Steps to reproduce** 1. Run a native task. Let the runner restart so that restart recovery sets `recovery_state = 'resuming_session'` on the finalization row. 2. Let the resumed run commit its result and close the task as done. 3. Wait past the expiration window (or run the sweep with a later clock). 4. See that the finalization row is still `committed` + `resuming_session`, and that Git cache expiration and native backup expiration skip the closed workspace. **Paperclip version or commit** `master` at 837add0caa **Deployment mode** Self-hosted server with native runtime enabled **Agent adapter(s) involved** Not adapter-specific (core bug) ## What Changed - Clear `recovery_state` and `recovery_request_id` in every write that persists or commits a native result: `recordCoordinatorDecision` in the status decision committer, the attention replay in `routePersistedNativeResultAttention`, `completeRun` in both `NativeRunCoordinatorStore` and `PaperclipControlPlanePort`, and `claimCoordinator` in the finalizer. - Add data migration `0376_clear_committed_native_recovery_state.sql` with its unchanged schema snapshot (the oldest snapshot is pruned, as the generator does). It clears `recovery_state` and `recovery_request_id` on rows that are `committed` with no lease owner. `recovery_history` keeps the audit trail. - In `reconcileActiveRecoveryActions`, resolve active and escalated actions on done or cancelled tasks (`source_terminal`) before the wake policy and owner filter. The existing owner-unverified guard still runs first. Actions with system recovery in `scheduled`, `running`, or `awaiting_evidence` are skipped. - In `isGitWorkspaceExpirationEligible` (closed-tree mode only), a recovery action blocks only if its cause is `native_workspace_finalization_owner_unverified` or its system recovery is in flight. A finalization blocks only if it has a lease owner or its phase is not `committed` or `terminal_failure`. Idle mode keeps the old strict checks. - In native harness backup expiration, a settled finalization (`committed` or `terminal_failure`, no lease owner) no longer blocks once the session's tasks are closed for the configured days. ## Verification - `pnpm exec vitest run` in `server/` on the touched and related files: `git-workspace-expiration`, `git-workspace-expiration-eligibility`, `native-harness-backup-expiration`, `native-finalization-migration`, `native-interaction-bridge`, `native-run-finalizer-telemetry`, `paperclip-control-plane-port`, `issue-recovery-actions`, `native-status-arbiter-corpus`: 9 files, 321 tests passed. After the tests moved to `native-finalization-recovery-state.test.ts`, that file, `git-workspace-expiration` and `native-run-finalizer-telemetry` passed again (95 tests). - `pnpm exec vitest run src/migration-snapshot-drift.test.ts` in `packages/db`: passed. - `pnpm exec vitest run src/__tests__/heartbeat-process-recovery.test.ts`: 408 tests passed. - `pnpm run typecheck` in `server/`: passed. - `pnpm run check:migrations` in `packages/db`: passed. - New tests: - Result persistence (port and coordinator store), finalizer claim and status decision commit (new focused file `native-finalization-recovery-state.test.ts`), and attention replay each clear `recovery_state` and `recovery_request_id`. - The migration clears committed, unleased rows. It keeps leased committed rows, `observed` rows, and `terminal_failure` rows unchanged, and keeps `recovery_history`. - The sweep resolves an agent-owned `resume_native_run` action and an escalated system action on a done task, and keeps an action with scheduled system recovery. The existing test "retains the exact native owner hold without changing a terminal task's disposition" still covers the owner-unverified hold. - Git expiration eligibility: a closed tree expires with `committed` + `resuming_session`, `terminal_failure` + `blocked`, an active agent recovery action, or an escalated system action. It stays with a leased finalization, an `observed` finalization, an owner-unverified hold, in-flight system recovery, an open tree, and in idle mode. - A full Git expiration of a closed tree with stale native state, then a reopen to the recorded commit. The existing "preserves scheduled runs, unresolved recovery, and live previews" test now uses an `observed` and a leased finalization as the unresolved recovery. - Native backup expiration expires `committed` + `resuming_session` and `terminal_failure` + `blocked`, and keeps an `observed` or leased finalization. - Mutation checks. I reverted each fix on its own, saw the matching test fail, and restored it: - Status decision commit, finalizer claim, port `completeRun`, store `completeRun`, attention replay: each new clearing test failed. - Migration (`WHERE false`): the backfill test failed. - Sweep order (wake policy filter moved back in front) and the in-flight system recovery guard: the sweep test failed. - Git eligibility: the closed-tree action relaxation, the finalization relaxation, the owner-unverified guard, and idle strictness each made the matching eligibility tests fail. - Backup expiration (`recovery_state IS NOT NULL` restored): both new expiry cases failed. - Not run: the full server suite and the e2e suites. CI runs them. ## Risks - The migration is a data-only `UPDATE` on `native_run_finalizations`. It touches only committed rows with no lease owner and a non-null `recovery_state`. The table is not on the known-large list, and the migration safety check passes. `recovery_history` is not changed. - Clearing `recovery_state` at commit and claim: the readers of this column need `phase = 'observed'` (continuation contract), `result_id IS NULL` (recovery service, failed-run retry), or running runs (heartbeat recovery). A row that has a result does not match any of them. The restart recovery summary counts will drop because they no longer count committed rows. - The sweep now resolves more actions on closed tasks. A done or cancelled task cannot continue, so these actions cannot act. Unverified owner holds and in-flight system recovery are kept. - Expiration now removes more closed workspaces and backups. Restore points and Git cache restoration still allow a reopen to rebuild the workspace. > For core feature work, check [`ROADMAP.md`](ROADMAP.md) first and discuss it in `#dev` before opening the PR. Feature PRs that overlap with planned core work may need to be redirected — check the roadmap first. See `CONTRIBUTING.md`. ## Model Used - Claude Opus 5.5 (`claude-opus-5-5`), 1M context, through Claude Code with tool use (shell, file edits, tests). ## Checklist - [x] I have included a thinking path that traces from project context to this change - [x] I have specified the model used (with version and capability details) - [x] I have checked ROADMAP.md and confirmed this PR does not duplicate planned core work - [x] I have searched GitHub for duplicate or related PRs and linked them above - [x] I have either (a) linked existing issues with `Fixes: #` / `Closes #` / `Refs #` OR (b) described the issue in-PR following the relevant issue template - [x] I have not referenced internal/instance-local Paperclip issues or links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip` URLs) - [x] My branch name describes the change (e.g. `docs/...`, `fix/...`) and contains no internal Paperclip ticket id or instance-derived details - [x] I have run tests locally and they pass - [x] I have added or updated tests where applicable - [x] I have updated relevant documentation to reflect my changes - [x] I have considered and documented any risks above - [ ] All Paperclip CI gates are green - [ ] Greptile is 5/5 with no open P2s, recommendations, or follow-ups - [ ] I will address all Greptile and reviewer comments before requesting merge --------- Co-authored-by: Paperclip <noreply@paperclip.ing>	2026-10-23 14:06:17 -07:00
Devin FoleyandPaperclip	dfe7df0015	fix(native): expire settled native workspace sync folders (#17358) ... ## Thinking Path > - Paperclip is the open source app people use to manage AI agents for work > - Native runs sync their workspace with a remote sandbox through a per-run folder under `<instance>/native-workspace-sync/<run>/` > - The folder holds a descriptor, a manifest, and workspace and git seed archives, and a seed can be more than a gigabyte > - Only a few finalization commit paths delete the folder, so many runs leave it on disk forever > - Instance disks fill up with folders that no code will read again > - This pull request adds a bounded, deadline-driven retention worker that removes a folder only when no reader can still need it > - The benefit is that instance disks stop growing with stale sync folders, and recovery and export paths keep their files ## Linked Issues or Issue Description **What happened?** `cleanupNativeWorkspaceSync(runId)` is the only code that deletes `native-workspace-sync/<run>/`. It runs only when finalization commits through specific paths. Runs that end in `terminal_failure`, retained recovery, reconstruction, superseded runs, commits through other paths, and server crashes leave the folder forever. On one instance, 22 folders older than 7 days held 6.8 GB. Single seed archives were up to 1.4 GB. **Expected behavior** A run's sync folder is removed after a retention window, once the run and its finalization are settled and no recovery or export path can still read it. The shared `generations` seed cache stays. **Steps to reproduce** 1. Run a native agent with a remote sandbox and let the run end in `terminal_failure` (or crash the server during finalization). 2. Wait more than 7 days. 3. Look in `<instance>/native-workspace-sync/`. The run's folder and its seed archives are still there. **Paperclip version or commit** `master` at 837add0caa **Deployment mode** Any deployment that runs native agents with remote sandboxes. **Agent adapter(s) involved** Native runtime with remote sandbox workspace sync (for example Codex on Daytona). ## What Changed - Added `server/src/services/native-runtime/native-workspace-sync-retention.ts`. It removes `native-workspace-sync/<name>/` when `<name>` is a UUID, the entry is a real directory, its newest file is older than the window, and one of these holds: - no `heartbeat_runs` row has that id (orphan); - the run has no valid `nativeWorkspaceSync` reference and is settled: terminal status, `finished_at` before the window, no live recorded process (see below), no live controller lease, no `nativeWorkspaceFinalizationOwner` receipt; - the run is settled as above, its `native_run_finalizations` row (if any) has no `lease_owner` and no `next_attempt_at` and is `committed` (any recovery state) or `terminal_failure` with no or `blocked` recovery state, no active/escalated export-cause or owner-unverified recovery action names it, no lease carries `nativeWorkspaceExportResume` or `pendingCleanupInFlight`, retained recovery cannot still use it (referenced lease destroyed, or no scheduled/running/awaiting_evidence system recovery and no queued/recovering workspace recovery), and historical recovery adoption (`adoptHistoricalWorkspaceRecoveries`) has no pending candidate for it. - Each folder is decided in one transaction that holds `pg_try_advisory_xact_lock` on the run's finalization ownership key. The rule is evaluated while the lock is held. A held lock skips the folder. The folder is renamed to `.expired-<uuid>` in that transaction and deleted after commit. The next sweep removes leftover `.expired-*` folders. `generations`, non-UUID names, symlinks and files are never touched. Each tick tries at most 50 leftovers, then checks at most 200 folders and removes at most 50. Leftovers and folders each continue from their own cursor, so undeletable leftovers do not block run folders. A leftover that cannot be deleted schedules the 15-minute retry. Deadline discovery reads run state 200 IDs at a time and stops when asked to. It supports dry run and `shouldContinue`. - A recorded `process_pid` / `process_group_id` blocks removal only while it can still be the run's own process. This reuses the rule from `conversation-continuation.ts`: PIDs are ignored when every lease of the run is remote (they are sandbox PIDs), and a local PID or process group blocks only while it exists on this host and its start time matches `process_started_at`. An unreadable start time keeps the folder. A recycled PID does not. - Separate finding, not changed here: native runs do not clear `process_pid` when they finish. It is cleared only by the status arbiter's `release_run_resources` effect (cancellations and commits) and by the recovery paths. A failed run gets a `schedule_retry` effect instead, so its PID stays set. For remote targets the stored value is the sandbox PID. Other readers already treat these PIDs as liveness hints only, so this PR does not change that write path. - Exported `nativeWorkspaceFinalizationLockKey` from `native-workspace-finalization-ownership.ts` and used it in `withNativeWorkspaceFinalizationOwnership` and the retention worker, so both use the same key derivation. - Exported `nativeWorkspaceSyncStateRoot()` from `native-workspace-sync.ts`; `descriptorDirectory` now uses it. - Registered the worker on the shared delivery-work coordinator (`DELIVERY_QUEUES.nativeWorkspaceSyncRetention`) in `server/src/index.ts`, next to the git restore point worker. It follows `rules/sleep-aware-background-work.mdc`: no interval. It runs at startup and at real deadlines: the earliest settled run's finish (or an orphan's newest file) plus the window; a recheck one window later for folders it kept; and a 15-minute retry after a failure or a held lock. With no folders, `nextRunAt` is `null`. The run folder is now created through one helper in `native-workspace-sync.ts` that notifies process-local listeners; the worker wakes on that signal only while it has no deadline, because any scheduled deadline is never later than a new folder's own deadline. `index.ts` unsubscribes the listener on shutdown. It pauses passive maintenance during idle drain. - Added `PAPERCLIP_NATIVE_WORKSPACE_SYNC_RETENTION_ENABLED` (default on unless `false`), `PAPERCLIP_NATIVE_WORKSPACE_SYNC_RETENTION_DRY_RUN` (default off) and `PAPERCLIP_NATIVE_WORKSPACE_SYNC_RETENTION_DAYS` (default `7`, minimum `1`) in `server/src/config.ts`. Documented them in `doc/DEVELOPING.md` and added a "Native workspace sync folders" section to `doc/recoverable-disk-cleanup.md`. ## Verification - `pnpm exec vitest run src/__tests__/native-workspace-sync-retention.test.ts src/__tests__/native-workspace-sync-retention-config.test.ts` in `server/`: 62 tests pass. They cover: - deletes a settled committed run (also with a left-over `resuming_session` recovery state), a blocked `terminal_failure` with no recovery owner, an orphan, and an unreferenced settled run; - keeps runs whose local process or process group is still alive, or whose live process start time cannot be read; keeps a running run with a PID; deletes terminal runs whose recorded local process exited, whose PID was recycled, or whose PID came from a destroyed sandbox; - keeps recent files, recently finished runs, unsettled runs, a live controller lease, an owner receipt, `observed` and `retryable_failure` phases, a live `lease_owner`, a scheduled `next_attempt_at`, and each non-blocked recovery state on `terminal_failure`; - keeps runs with an open export-cause or owner-unverified recovery action, `nativeWorkspaceExportResume` or `pendingCleanupInFlight` lease metadata, retained recovery in flight on a lease that was not destroyed, or pending historical recovery adoption; deletes when the retained lease was destroyed; - never touches `generations`, non-UUID names, symlinks or files; dry run deletes nothing; leftover `.expired-*` folders are removed; an advisory lock held by another transaction makes it skip; ticks are bounded and resume from a cursor; - `nextDeadlineAt` returns `null` with no folders, now with leftovers, the settled finish plus the window, the orphan mtime plus the window, and one window later for kept folders; the registered worker goes quiet with no folders, retries after a held lock or an undeletable leftover, and the real delivery-work coordinator wakes again when the real producer (`writeDescriptor`) creates a run folder; leftover removal is bounded and undeletable leftovers do not block run folders. - Mutation checks: I removed each guard one at a time (advisory lock, owner receipt, process pid, finished_at window, lease owner, next attempt, phase, recovery state, export recovery, owner-unverified, export resume, retained recovery, backfill pending, symlink/real-directory check, dry run, and both mtime checks together, plus the folder-creation wake, the process liveness rule (restoring the old `process_pid IS NULL` rule, the sandbox exemption, the process group check, the recycled-PID check, the unreadable start time), the leftover batch limit, the leftover cursor and the leftover retry delay). Each mutation made at least one test fail. I restored the code after each one. Removing only the first mtime check does not fail a test, because the second check inside the transaction still keeps the folder. - `pnpm exec vitest run` on related suites in `server/`: `native-workspace-sync.test.ts`, `native-workspace-sync-history.test.ts`, `native-workspace-finalizer.test.ts`, `native-workspace-finalizer-failure.test.ts`, `native-harness-backup-expiration*.test.ts`, `git-restore-point-ledger*.test.ts`, `delivery-work-coordinator.test.ts`, `chat-delivery-work.test.ts`. All pass. - `pnpm run typecheck` in `server/` passes. - Greptile review: earlier rounds; all findings fixed with tests; final score 5/5 with no open threads. - Not run: the full server test suite and an end-to-end run against a real instance. I did not measure disk savings on a live instance. ## Risks - Deleting a folder that a reader still needs would make that path fall back or fail. Same-run resume and export run under the finalization ownership lock or before the run settles, and the worker checks the rule while it holds the same lock. Retained workspace recovery already handles a missing folder (ENOENT) by snapshotting the sandbox. The rule keeps the folder for every in-flight or reopenable recovery state listed above. - A committed finalization row with a stale recovery state and no lease owner is treated as settled. Nothing reads the recovery state of committed rows. - The worker is on by default. Operators can set `PAPERCLIP_NATIVE_WORKSPACE_SYNC_RETENTION_DRY_RUN=true` first to see candidates in the log, or turn it off with `PAPERCLIP_NATIVE_WORKSPACE_SYNC_RETENTION_ENABLED=false`. - The first sweep on a large instance does more filesystem work. It is bounded to 200 folders checked and 50 removed per tick. - The folder-creation wake is process-local. A folder created by another server process sharing the same instance directory is picked up at the next deadline or restart. - A stale `process_pid` no longer blocks removal. If a run's local process is still alive with its recorded start time, the folder stays. Live work is also still guarded by the run status, controller lease, finalization lease and ownership lock checks. - No schema migration. > For core feature work, check [`ROADMAP.md`](ROADMAP.md) first and discuss it in `#dev` before opening the PR. Feature PRs that overlap with planned core work may need to be redirected — check the roadmap first. See `CONTRIBUTING.md`. ## Model Used - Claude Opus 5.5 (`claude-opus-5-5`), 1M context, through Claude Code with tool use (shell, file edits, test runs). ## Checklist - [x] I have included a thinking path that traces from project context to this change - [x] I have specified the model used (with version and capability details) - [x] I have checked ROADMAP.md and confirmed this PR does not duplicate planned core work - [x] I have searched GitHub for duplicate or related PRs and linked them above - [x] I have either (a) linked existing issues with `Fixes: #` / `Closes #` / `Refs #` OR (b) described the issue in-PR following the relevant issue template - [x] I have not referenced internal/instance-local Paperclip issues or links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip` URLs) - [x] My branch name describes the change (e.g. `docs/...`, `fix/...`) and contains no internal Paperclip ticket id or instance-derived details - [x] I have run tests locally and they pass - [x] I have added or updated tests where applicable - [x] I have updated relevant documentation to reflect my changes - [x] I have considered and documented any risks above - [ ] All Paperclip CI gates are green - [ ] Greptile is 5/5 with no open P2s, recommendations, or follow-ups - [ ] I will address all Greptile and reviewer comments before requesting merge --------- Co-authored-by: Paperclip <noreply@paperclip.ing>	2026-10-23 14:05:55 -07:00
DottaandPaperclip	9c442cf48e	feat(connections): deploy and configure Supabase and Vercel (#17217) ... Add governed Supabase and Vercel deployment/configuration connectors with vaulted credentials, agent access policies, approvals, audit, and bounded provider operations. Deliver reviewed REST actions to native agents and guard Vercel preview intent on empty projects. Preserve secret-safe request identity and durable retry behavior. Verified by current-head CI, fresh Greptile 5/5 review, and real-agent deployment/configuration walkthroughs on disposable provider resources. Test resources and temporary provider tokens were removed after verification. Co-Authored-By: Paperclip <noreply@paperclip.ing>	2026-10-23 11:37:29 -07:00
Nicky LeachandPaperclip	a708a13336	Separate plugin workspace completion from maintenance inspection (#17329) ... ## Thinking Path > - Paperclip manages AI agents and their work. > - Storage plugins own remote task workspaces. > - Run completion currently requests the same inspection used for storage cleanup. > - That inspection can fetch remote refs and scan files after the agent has finished. > - Completion needs retained workspace identity and durable writes, not permission to delete files. > - This change adds an optional completion operation and keeps maintenance inspection separate. ## Linked Issues or Issue Description **What happened?** A successful plugin-backed run can fail during completion because the storage provider performs a slow remote-recoverability inspection. Dirty or unpublished output does not need a deletion-safety proof to remain valid task output. **Expected behavior** Completion verifies the assigned workspace and confirms durable writes through the provider. Cleanup still requires the existing full inspection. **Steps to reproduce** Run a task with plugin-owned storage whose inspection fetches remote refs. Let the agent finish, then observe completion waiting for the maintenance inspection. Related context: #16428 added finalization observability. The duplicate search found no existing PR for this provider contract. ## What Changed - Add optional `workspaceProvider.finalizationVersion: 1` and strict `finalize` / `finalized` schemas. - Pass original run and agent context through live completion and recovered completion. - Give the new operation a 30-second deadline and keep ownership checks and lifecycle serialization. - Retain the inspection fallback for providers without the capability. Keep maintenance inspection and removal unchanged. ## Verification - SDK build passed. - Targeted SDK and completion unit tests: 7 passed. - Added integration coverage for capability selection, legacy fallback, maintenance separation, and failure propagation. - Local integration setup timed out starting PostgreSQL; the integration suite passed in GitHub CI. - Full build/typecheck and broader tests passed in GitHub CI (55 successful checks, 2 skipped). Local checks remained targeted as requested. - Diff reviewed for secrets and operational identifiers. ## Risks The capability is opt-in. Providers must not advertise it until their completion implementation is available. An unavailable provider or failed durability barrier remains retryable. No schema or stored-binding migration is required. Test-file size exception: the provider integration suite grows from 973 to 1,002 lines. The 29-line case follows the same prepared binding through legacy completion, opted-in completion, and maintenance inspection using the existing single-connection database fixture. Keeping it there avoids a second embedded-Postgres lifecycle for one transition test. The completion helper unit tests are in a separate focused file. ## Model Used OpenAI GPT-6 Codex, with reasoning and code/test tools. ## Checklist - [x] I have included a thinking path that traces from project context to this change - [x] I have specified the model used (with version and capability details) - [x] I have checked ROADMAP.md and confirmed this PR does not duplicate planned core work - [x] I have searched GitHub for duplicate or related PRs and linked them above - [x] I have either (a) linked existing issues with `Fixes: #` / `Closes #` / `Refs #` OR (b) described the issue in-PR following the relevant issue template - [x] I have not referenced internal/instance-local Paperclip issues or links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip` URLs) - [x] My branch name describes the change (e.g. `docs/...`, `fix/...`) and contains no internal Paperclip ticket id or instance-derived details - [x] I have run tests locally and they pass - [x] I have added or updated tests where applicable - [x] I have updated relevant documentation to reflect my changes - [x] I have considered and documented any risks above - [x] All Paperclip CI gates are green - [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups - [x] I will address all Greptile and reviewer comments before requesting merge --------- Co-authored-by: Paperclip <noreply@paperclip.ing>	2026-10-23 09:07:35 -07:00
DottaandPaperclip	3bd709df8b	Operationalize Product E2E accounting, tracing, and scheduling (#17009) ... ## Thinking Path > - Paperclip manages agents and the work they perform. > - Product E2E tests exercise real agents, tools, setup and cleanup. > - Repeated runs need retained costs and traces, including failed attempts. > - A passing retry must not hide earlier spending or feedback. > - Recurring work also needs admission limits, private reports and failure detection. > - This change supplies those controls while keeping paid activation behind existing gates. ## Linked Issues or Issue Description Refs #16996 and #17158. This is the consolidated landing of the reviewed eval operations stack: #17019, #17024, #17025, #17027, #17030, #17033, #17035, #17038, #17043, #17044, #17048, #17050, #17051, #17092, #17096, #17100, #17107, #17109, #17112, #17115, #17117, #17121, #17123, #17127, #17130, #17133, #17134, #17137, #17140, #17143, #17154. The repository permits squash merges only. A local rehearsal showed that squashing each slice into master causes repeated conflicts in dependent slices. This PR preserves their commits and lands their combined implementation in one reviewed integration. Superseded slices will close after this merge. ## What Changed - Retain every attempt's cost receipt, including setup, failures, interruptions and retries. Separate reported amounts, estimates, missing costs and reserved capacity in reports and dashboards. - Add bounded request admission, exact model pricecards, gateway error accounting, cache policy and reconciliation evidence. Refuse unsupported routes and requests that cannot fit the allowance. - Integrate Braintrust gateway traces and OTLP correlation, with secret filtering and experiment imports. Record phase timing, including setup, feedback capture and cleanup. - Collect complaint and suggestion evidence after each attempt, including recovery after failures. Retain explicit review dispositions independently from the product grade. - Add gated daily and weekly selections, measured forecasts, setup/readiness checks, wall-time limits and retained monitor notifications. Include declared non-model overhead in admission while reporting the existing subscription separately. - Keep recurring history private, bound uploads and retention, and use isolated archive environments. Keep public publication an explicit operation. Report and publication jobs install only the committed lockfile, with scripts disabled and isolated stores; stale pins fail closed. - Integrate current master, preserve its Product E2E journey billing and privacy checks, and test that shared setup receipts do not double-count estimated agent usage. Preserve upstream fixture repairs. ## Verification - Complete integration baseline `0649a5ce7544ab20825c2183d2f421157db49f24` includes master `a3e1d915a7110a4e115b46396a3f79e6dfb4d05e` and every original stack head as ancestors. - On that integration baseline, `pnpm test:e2e:runner:unit`: 4,012 Vitest tests passed, two skipped, across 193 files; all 137 Node source-contract tests passed. - Focused billing and Product E2E journey contract checks: 24 tests passed. They cover estimates, unknown receipts, single-owner setup costs, browser-only execution and private publication guards. - Monitor and workflow wiring: all 96 Node tests passed. `node scripts/check-token-gates.mjs`: all gates clean. - `pnpm test:e2e:runner:typecheck` passes after the standard Runner TypeScript build refreshed local declarations. The first attempt rejected the new master `runner_prepared_launch` union member because this checkout retained an older generated declaration; the source union already contained that member. - Current head `492b0708a1c531a023d9ac10f0f3dc6383cc1754` removes dependency re-resolution from archive-authorized reporting jobs after the security scan flagged it. All 15 workflow-security tests pass after updating the old two-install assertion. - Hosted [CI run 39965460180](https://github.com/paperclipai/paperclip/actions/runs/39965460180) passes on the current repaired head, including typecheck, build, general tests, Runner checks, browser shards and canary dry run. Greptile is 5/5 on this exact head with no unresolved threads. The security scan passes after the fixed lockfile-resolution thread was resolved. - Paperclip Review returned a terminal neutral check but an incomplete 0-file assessment on the repaired head: its platform blocked both diff responses as prompt-injection content. This is not a successful code review. No bypass or fabricated pass was attempted; current-head Greptile, security and hosted CI are independent gates. - No paid test, reservation release or recurring-run activation accompanies this landing. Live route qualification and invoice reconciliation remain separate evidence. <details> <summary>Retained earlier validation failures</summary> Earlier broad local runs had two 15-second test timeouts (CLI poll cadence and Retry validation), one embedded-database setup timeout, and later PostgreSQL semaphore exhaustion. The exact timed-out tests passed separately without larger timeouts; the broad-run causes were not established. Those local failures remain distinct from subsequent hosted CI results. The independent #17158 fix records its Muse fixture collision, its UUID correction and hosted verification. Local Muse execution was also blocked by macOS embedded-PostgreSQL startup. No historical failure is treated as a successful paid qualification. </details> ## Risks - Admission is a local control, not a provider invoice cap. Missing provider receipts or resource charges retain unknown amounts and holds; estimates do not become billed dollars. - The bounded path admits only documented local suites and provider routes. Ordinary legacy or separate Runner protocol campaigns have different controls. Merging this code does not qualify additional routes. - Recurrence still needs the existing enable gates and current qualification/allowance evidence. Archive permissions and resources must match the documented private-environment contract. - Legacy reports may lack complete attempt or phase evidence. Reports preserve that limitation and do not infer zero usage from missing data. ## Model Used OpenAI GPT-6 through Codex, with reasoning, repository tools and code execution. The exact deployment variant and context-window size are not exposed by this session. ## Checklist - [x] I have included a thinking path that traces from project context to this change - [x] I have specified the model used (with version and capability details) - [x] I have checked ROADMAP.md and confirmed this PR does not duplicate planned core work - [x] I have searched GitHub for duplicate or related PRs and linked them above - [x] I have either (a) linked existing issues with `Fixes: #` / `Closes #` / `Refs #` OR (b) described the issue in-PR following the relevant issue template - [x] I have not referenced internal/instance-local Paperclip issues or links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip` URLs) - [x] My branch name describes the change (e.g. `docs/...`, `fix/...`) and contains no internal Paperclip ticket id or instance-derived details - [x] I have run tests locally and they pass (targeted checks; full-suite host limitation disclosed above) - [x] I have added or updated tests where applicable - [x] I have updated relevant documentation to reflect my changes - [x] I have considered and documented any risks above - [x] All Paperclip CI gates are green - [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups - [x] I will address all Greptile and reviewer comments before requesting merge --------- Co-authored-by: Paperclip <noreply@paperclip.ing>	2026-10-23 07:18:37 -07:00
DottaandPaperclip	4173059081	fix(inbox): keep advisory GitHub review waits quiet (#17318) ... ## Thinking Path > - Paperclip is the open source app people use to manage AI agents for work. > - Mine shows a person's participation and requests that need their response. > - Automatic GitHub reviews should remain quiet until the assigned work needs human input. > - Review bots used completion requests to keep tasks in review while CI or a PR was still open. > - Those requests correctly entered Mine, despite the automatic-work filter from #16356. > - This pull request gives published reviews an existing provider-event wait in the in-review state and withdraws superseded completion requests. > - Real input requests and separate approval gates keep their current behavior. ## Linked Issues or Issue Description Refs #16356 Refs #13314 An advisory score below 5/5, pending or failed CI, or an unmerged PR does not by itself require a person's approval in Paperclip. The bot can track those conditions without adding a completion card to Mine. ## What Changed - Explain the quiet review lifecycle in the GitHub review instructions. Use a yielded provider-event wait, or an existing saved monitor, after publication. Report done when the configured completion conditions are met. - Keep a confirmed, published review in `in_review` during that wait. Reuse existing authorization and monitor delivery. Add no schema, timer, or polling loop. - Recognize the committed external wait in review attention and recovery. Shared execution receives a verified publication flag; GitHub receipt lookup stays with the GitHub module. Other chat waits keep their current status. - Withdraw an older system-created completion request only when the same bot has published both reviews and its new report has no attention request. Keep explicit cards, separate approval gates, and requests without the prior review evidence. Finish validation stays read-only; withdrawal commits atomically with the new status after checking current governance, the admitted result, and both low-risk contracts. - Update the product rule, capability maps, and regression coverage. ## Verification - Final commit `7c502118eec36028d1b4537bb8797ef893940bf0`: 54 GitHub checks passed, two intentionally skipped, none pending or failed. Greptile is 5/5, the security scan passed, and all review threads are resolved. - Passed: `pnpm -r typecheck` and `pnpm build`. Rechecked server typecheck and build after the final authorization guard. - Passed: 195 tests across `external-chat-wait.integration.test.ts`, `status-arbiter.test.ts`, `review-instructions.test.ts`, and `issue-liveness.test.ts`. The database suite used an isolated PostgreSQL 18 container through `PAPERCLIP_TEST_DATABASE_URL`. - Acceptance coverage: 3/5 stays in review outside Mine; 5/5 with pending completion conditions stays in review; 5/5 with satisfied conditions finishes quietly; a real repository-access request enters Mine until resolved. Also covers obsolete-card withdrawal, transaction rollback, rejected reports, separate approval gates, multiple reviewed heads, saved monitors, and revoked endpoints, repositories, or membership. - Passed: `node scripts/check-maps.mjs`, `node scripts/check-module-boundaries.mjs`, and `git diff --check`. - The initial acceptance run exposed a missing authenticated user in the test fixture. Added the user required by the existing addressee authorization check. All 154 tests in that database suite then passed, including the final rerun. - Review found premature withdrawal during validation, stale repository access, and a missed receipt when a run reviewed multiple heads. The revision fixes all three and includes acceptance regressions. The saved-monitor commit guard now accepts the verified published-review state. - `pnpm test:run` was attempted but could not complete on this Mac. Embedded PostgreSQL failed to allocate semaphores (`semget: No space left on device`); a direct initialization probe confirmed the host resource limit. The isolated database run proves the affected suite, not the full repository suite. - These tests exercise persisted review receipts, finalization, and Mine queries. They do not prove a live model followed the new instructions or submit a live GitHub review. ## Risks - The bot must follow the new lifecycle instructions. A real explicit attention request still enters Mine. - Existing obsolete cards are withdrawn when the same bot publishes a later review and reports no human dependency. This change does not run a bulk cleanup of historical inbox entries. - Review attention now recognizes an external response path. It requires an applied current status decision, a successful bound run, and current conversation, repository, and principal authorization. - No migration or UI change. The full local test suite is unverified because of the host database limit; CI passes on the final commit. ## Model Used OpenAI Codex, GPT-6, with reasoning, repository inspection, code editing, and test execution. The exact deployment model ID and context-window size are not exposed in this session. ## Checklist - [x] I have included a thinking path that traces from project context to this change - [x] I have specified the model used (with version and capability details) - [x] I have checked ROADMAP.md and confirmed this PR does not duplicate planned core work - [x] I have searched GitHub for duplicate or related PRs and linked them above - [x] I have either (a) linked existing issues with `Fixes: #` / `Closes #` / `Refs #` OR (b) described the issue in-PR following the relevant issue template - [x] I have not referenced internal/instance-local Paperclip issues or links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip` URLs) - [x] My branch name describes the change (e.g. `docs/...`, `fix/...`) and contains no internal Paperclip ticket id or instance-derived details - [x] I have run tests locally and they pass (195 focused tests; full-suite limitation above) - [x] I have added or updated tests where applicable - [x] I have updated relevant documentation to reflect my changes - [x] I have considered and documented any risks above - [x] All Paperclip CI gates are green - [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups - [x] I will address all Greptile and reviewer comments before requesting merge --------- Co-authored-by: Paperclip <noreply@paperclip.ing>	2026-10-23 07:14:40 -07:00
Nicky Leach	583ec2443a	Read deliverable files before locking mutation rows (#17309)	2026-10-23 05:46:38 -07:00
Nicky Leach	412914cfa7	Read native plugin task output files on the execution host (#17285)	2026-10-22 23:38:09 -07:00
Nicky Leach	2cd6eb27c7	fix(runner): record the plugin-prepared working directory (#17243)	2026-10-22 20:42:26 -07:00
Dotta	46760cc588	fix(chat): honor dismissal for all composer requests (#17218) ... ## Thinking Path > - Paperclip is the open source app people use to manage AI agents for work. > - Task conversations show requests in the feed and above the message composer. > - Earlier fixes kept dismissed questions in history, but excluded completion reviews and other request kinds. > - Closing those forms left a pending badge, and the server could still demand a response. > - This pull request saves human dismissal and removes the request from composer reminders and ordinary completion gates. > - People can continue the conversation and reopen the request from history. ## Linked Issues or Issue Description Related work: #15229 and #15392. **What happened?** Dismissing a completion review closed its form but left it counted as pending. It could return after reload, block a retry, or cause the agent to demand another response. Raw runtime requests could also lose their only usable control when dismissed. **Expected behavior** Dismissal leaves an accessible request in the feed and clears the composer form and pending count. It persists after reload. It does not submit an answer, approve an action, or wake the agent. **Steps to reproduce** 1. Open a task with a pending completion review or another composer request. 2. Dismiss the request, then reload the task. 3. Check that the composer stays clear and the feed entry can reopen the request. ## What Changed - Add nullable dismissal fields and a human-only dismissal endpoint with company, private-task access, resolver, and locked review-policy checks. - Persist saved-request dismissal on the server. Keep browser persistence for raw runtime requests and existing question dismissals. - Keep confirmations, choices, item verdicts, suggested tasks, and runtime requests accessible in the feed. - Exclude dismissed ordinary requests from completion and retry gates. Tell agents not to repeat deferred requests. - Preserve tool, secret, connection, plan, company-policy, and configured review authorization gates. Expire deferred non-question requests when their task completes. - Preserve the selected form when another dismissal finishes saving. Keep reopened reviews visible through delayed comment refreshes. - Add a completion-review Storybook test drive and update design, API, database, and capability documentation. ## Verification - `pnpm -r typecheck`: passed. The final UI changes also passed the UI typecheck. - `pnpm build`: passed. The final UI changes also passed the UI production build. - Focused UI and transcript tests: 550 passed across nine files after merging the current base branch. - Focused database, completion, and prompt tests: 105 passed across three files, including two review-policy regressions that failed before the fix. The tests reject a review requester excluded by current policy, preserve the pending gate on denial, and permit an independent reviewer to defer the request. - Route regression suite: 81 passed, including denial before reading or mutating a private-task request. - `pnpm check:token-gates`: passed. - Map and Storybook structural checks: passed; 30 map/catalog script tests passed. - Browser: used the production task-thread components in the completion-review fixture. Dismissed, reloaded, reopened from the feed, and dismissed again. No pending badge or composer takeover remained. Story callbacks simulate API saves; separate server tests cover persistence and permissions. - `pnpm test:run`: stopped after the general-server group reported one failure in `workspace-runtime.test.ts`: "returns a bounded structured conflict and exposes only same-company workspace references". The same test passed in isolation (1 passed, 178 skipped). The cause of the full-suite failure is not established. The full PR CI suite subsequently passed on e243cbb001; its two authorization review findings are fixed in 9e1b4478b3. Fresh [full CI](https://github.com/paperclipai/paperclip/actions/runs/39871944846) passes on 9e1b4478b3, including the previously failing server and browser shards. All 54 executed checks passed; two optional Storybook deployment/visual jobs were skipped. The legacy security status also passed. Fresh Greptile review is 5/5, the security scan passes, and no review threads remain open. This full CI run settles the merge gate; the earlier local workspace-suite failure remains recorded above because its cause was not established. - Additional verification: the original failing browser journey passed locally after the delayed-refresh fix. The expanded page-reload case also passes on 9e1b4478b3 (52.7s): dismiss, reload, reopen, approve, and receive the actual tool failure in the continuing task. It exposed a fixture reading an accepted request before tool execution finished; the fixture now waits for a stored execution result. The first reload attempt stopped on a still-loading page at the default five-second assertion; the reload now uses the suite’s navigation allowance. A controlled server-restart run timed out waiting for server health before the UI assertions. Local route-suite runs timed out during concurrent module loading; sequential imports passed all 81 tests, including the privacy regression. - Initial verification failures: a missing SDK build and a story fixture type error were fixed. PostgreSQL bootstrap then failed because the host had exhausted its semaphore allowance. After explicit operator approval, 64 verified abandoned PostgreSQL semaphore sets were reclaimed; no live process was stopped. The database regressions then passed. The raw-runtime regression exposed a missing feed control; the implementation now preserves that entry and the regression passes. ## Risks - Apply the additive database migration before the new server code. It adds two nullable columns and does not change existing decisions. - A dismissal is shared task attention state. Only a human with task read access and current resolver/review authority can persist it. Review policy is checked under the task lock. The operation is idempotent and records the dismissing user. - Raw runtime dismissal remains specific to a browser. Saved interaction dismissal persists across browsers. - A deferred review is not an approval. Tests retain protected-action and configured review gates. - The browser walkthrough uses a fixture. This branch has not been deployed to a live instance. ## Model Used OpenAI Codex, GPT-6, with code execution and browser tools. The exact backend model ID and context-window size are not exposed in this session. ## Checklist - [x] I have included a thinking path that traces from project context to this change - [x] I have specified the model used (with version and capability details) - [x] I have checked ROADMAP.md and confirmed this PR does not duplicate planned core work - [x] I have searched GitHub for duplicate or related PRs and linked them above - [x] I have either (a) linked existing issues with `Fixes: #` / `Closes #` / `Refs #` OR (b) described the issue in-PR following the relevant issue template - [x] I have not referenced internal/instance-local Paperclip issues or links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip` URLs) - [x] My branch name describes the change (e.g. `docs/...`, `fix/...`) and contains no internal Paperclip ticket id or instance-derived details - [x] I have run tests locally and they pass - [x] I have added or updated tests where applicable - [x] I have updated relevant documentation to reflect my changes - [x] I have considered and documented any risks above - [x] All Paperclip CI gates are green - [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups - [x] I will address all Greptile and reviewer comments before requesting merge	2026-10-22 18:37:36 -05:00
DottaandPaperclip	734c265339	Default new Pi agents to Paperclip Runner (#17142) ... ## Thinking Path > - Paperclip manages AI agents and their work. > - Users choose a harness during agent setup. > - Claude, Codex, and OpenCode already receive their qualified Runner default. > - Pi has a qualified native integration but new Pi agents still use the direct adapter. > - This change gives new Pi agents the native default on supported targets. > - Saved agents keep their runner and compatible settings. Legacy remains available in Advanced. ## Linked Issues or Issue Description Refs #17120, #14921, #14922, #14923, #14924, and #14956. Related generic default work: #15422. This PR is the separate Pi follow-up to the merged OpenCode change. **Current behavior** Choosing Pi for a new agent saves the direct Pi adapter. The native Pi integration remains behind the generic experimental flag. **Proposed behavior** Default new Pi agents to ACPX Pi on macOS ARM64/x64 and GNU/Linux x64 with supported glibc. Keep unsupported targets and explicit Legacy selections on the direct adapter. Require an explicit provider/model before test or hire. Permit model-free inactive setup drafts. **Reason and benefit** Users choose Pi once and receive its qualified runner. Saved agents retain their identity and settings. Conversions reject unsupported legacy thinking and launch settings instead of dropping them. ## What Changed - Add Pi to the shared platform/default contract and server creation selection. - Admit native Pi without the generic experimental flag. - Preserve provider models, credentials, workspace settings, exact thinking, and saved native policies. - Add Pi runner controls, branding, setup resume, onboarding, built-in configuration, and import handling. - Add managed Pi OpenRouter routing and matching native provider API-key accounts. Keep subscription and custom gateway exclusions. Clear alternate credentials and reject custom Pi provider overrides. - Keep Pi draft models empty instead of applying Claude's default model. - Verify setup against the pinned Pi runtime. For native Pi on the official OpenRouter route, reverify the API key live without requiring a global Legacy Pi CLI. - Match Pi’s bounded controller close window to its native snapshot cleanup and lifetime verification, preserving explicit caller deadlines and the mandatory drain/suspension proof. - Bind Pi sidecars to the package that owns the pinned native assets, including source and vendored server layouts. Other providers retain their existing package authority. - Keep protocol-owned finish/block tools out of the ACPX forwarded catalog. The trusted bridge installs these tools itself; the complete Rust authorization catalog and terminal receipt ledger remain intact. This fixes actual Pi session startup and applies to other ACPX consumers. - Advance Copilot’s shared-source attestation to v58 because it pins the shared files touched by Pi. Preserve immutable v57 bytes and historical decoding; Pi’s own release identity is unchanged. - Add regression coverage and update the paired maps and developer documentation. ## Verification - Passed: full repository typecheck and full production build on final head 656d304783, including the generated attestation repair. - Passed: focused shared/server/UI suites covering default selection, platform fallback, conversion preservation, inactive drafts, managed account compatibility, credential isolation, OpenRouter routing/model IDs, exact thinking controls, and saved-account selection. Relevant batches include 375 server/conversion tests, 267 account/routing tests, and 110 UI setup/account tests. - Passed: 179 attestation, historical-profile, qualified-profile, and native-execution contract tests after CI identified stale Copilot source hashes. The identity generator check passes; the only delta after the passing Pi browser run is this Copilot attestation/history repair. - Passed: 145 managed-account tests, including actual service preparation and API-key adoption/rejection for native Pi without the Legacy CLI; 6 pinned-installation probe tests. - Red then green: an actual task failed session.open because its 54-operation catalog included the bridge-owned terminal tools. The regression with those tools failed before the filter; all 399 Rust library tests pass after it. The full product retry exposed an additional package-authority mismatch. Four authority tests failed before that repair; 11 authority checks and 14 installation/asset checks pass afterward. Direct real Pi session initialization with the corrected package root and catalog succeeds. No model prompt was sent by that diagnostic. - Red then green: real Pi posted Hello from Pi but its controller closed before native cleanup could finish. The cleanup-budget test failed with the old default and passes with the bounded Pi window. All 46 selected suspension, drain, and package-authority tests pass after building their native fixture. - Passed: token gates, paired map checks, Rust formatting, and git diff --check. - Passed real browser acceptance on macOS ARM64, generic native runner flag disabled, source a433748a12 (Pi code unchanged afterward): the UI selects Paperclip Runner by default, retains Pi and the selected model/account, and verifies the pinned runtime plus live OpenRouter key. A fresh UI-created task, assigned to the UI-created native Pi agent, posted exactly `Hello from Pi` and reached Done without retry or restart. The native run and workspace finalization succeeded; the response and Done persisted after Reload. - Evidence: 8 preserved browser attempts, including the final passing 18-step journey with all screenshots. Prior failures remain recorded. The earlier failed checkpoint run recovered on server restart; that recovery is separate from the fresh final task’s clean success. - Preserved browser failures: missing account control/inherited Claude draft model; incompatible managed-account/model-prefix handling; generic npm probe for Pi; Legacy CLI hello check; duplicate terminal tools and wrong provider-package authority at actual native session.open; a real Hello from Pi comment followed by premature checkpoint cleanup timeout. Each failure has retained screenshots/logs and a corresponding focused repair. The fresh final task proves these repairs end to end. - The exact Runner Vitest shard was also run locally after the attestation fix: the stale-hash failure is gone; 1,833 tests passed, 10 skipped, and two Codex retained-control settlement scenarios failed with `native_cleanup_maintenance_unproven` during terminal ACK/suspension replay. Both scenarios passed in an isolated rerun (2/2), and the same 19-test file passed in the preceding Linux CI run. The precise full-shard timing cause is not established. These Codex scenarios are outside the changed Pi paths; the original local failures are retained; no complete local Runner-shard pass is claimed. The corresponding Runner shard now passes on the final head in hosted Linux CI. All 60 final-head check runs are now terminal and clean (55 successful, 1 neutral, 4 skipped), and the legacy Snyk status is successful. - Local full repository tests were attempted but not completed: provisioning briefly confused a workspace symlink, then a later run was stopped before browser-driven repairs. No full local-suite pass is claimed. Final-head hosted CI is green and fresh Greptile review is 5/5 with all review threads resolved; earlier jobs canceled by runner shutdown are not counted as a pass. ## Risks - Pi cleanup has a finite 45-second default window, accounting for the native 30-second snapshot cleanup and 5-second lifetime fence. Other providers and explicit caller deadlines retain their prior behavior. - Pi requires explicit operator setup with `paperclipai runtime setup pi` on the execution host. This PR does not add automatic downloads. - Linux ARM64, Windows, musl, and unqualified targets retain Legacy. - Legacy thinking levels minimal, medium, and xhigh cannot be translated exactly. Native max thinking, warm lifecycle, or restricted permissions cannot be dropped during a return to Legacy. - Copilot’s bound profile advances to v58 with exact current launch admission; v57 remains decodable for recovery. No historical identity is rewritten. - Existing agents and immutable run descriptors are not migrated. Cloud Pi availability is unchanged. ## Model Used OpenAI GPT-6 through Codex with reasoning, code editing, command execution, and browser use. The exact serving model ID and context-window size are not exposed in this session. ## Checklist - [x] I have included a thinking path that traces from project context to this change - [x] I have specified the model used (with version and capability details) - [x] I have checked ROADMAP.md and confirmed this PR does not duplicate planned core work - [x] I have searched GitHub for duplicate or related PRs and linked them above - [x] I have either (a) linked existing issues with `Fixes: #` / `Closes #` / `Refs #` OR (b) described the issue in-PR following the relevant issue template - [x] I have not referenced internal/instance-local Paperclip issues or links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip` URLs) - [x] My branch name describes the change (e.g. `docs/...`, `fix/...`) and contains no internal Paperclip ticket id or instance-derived details - [x] I have run tests locally and they pass - [x] I have added or updated tests where applicable - [x] I have updated relevant documentation to reflect my changes - [x] I have considered and documented any risks above - [x] All Paperclip CI gates are green - [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups - [x] I will address all Greptile and reviewer comments before requesting merge --------- Co-authored-by: Paperclip <noreply@paperclip.ing>	2026-10-21 17:10:00 -05:00
DottaandPaperclip	39e44a9d9b	Default new OpenCode agents to Paperclip Runner (#17120) ... Default new OpenCode agents to Paperclip Runner on qualified macOS and Linux x64 targets. Preserve saved runner choices, explicit Legacy selection, and unsupported-target fallback. Pi remains a separate change. Verified the complete browser path with a real OpenRouter connection: create the new agent, assign a task, observe its response and Done status, and reload to confirm persistence. CI passes and Greptile is 5/5 with no unresolved findings. Co-Authored-By: Paperclip <noreply@paperclip.ing>	2026-10-21 15:09:15 -05:00