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DottaandClaude Opus 5.5 8a34c1b62c fix(budgets): bound the accounting hold so one missing receipt cannot wedge a company (#19700)
## Thinking Path

> - Paperclip is the open source app people use to manage AI agents for
work
> - Pending run accounting holds new company work until it settles
(#19497, #19606, #19673)
> - A run settles only with closure evidence: a verified local stop, or
a terminated remote sandbox. Without that evidence it held the whole
company forever. In restart-chaos storm 4, a single run held 35 tasks
for hours
> - Two more shapes kept the hold alive. A run whose result had already
been accepted never counted as closed. A recovery that already owned its
held reservation was refused by other tasks' recovering accounting, so
concurrent recoveries waited on each other
> - This pull request bounds the hold, closes accepted-result runs on a
verified stop, and lets an owned recovery finish
> - The benefit is that no single missing receipt can wedge a company,
while genuinely unknown spend still surfaces under the blocking policy

## Linked Issues or Issue Description

Follow-up to #19497, #19606 and #19673.

**What happened?**
- Storm 4: run `f879895f` timed out in `session.open`. Its local stop
was never verified (its process identity is still recorded), recovery
ended in `terminal_failure`, and its receipt never became ready. From
then on, every new-work wake got 409 "New work must wait while a native
run recovers its unfinished accounting". That was 93 refusals, 35
blocked tasks, and no Retry.
- Storm 4: run `6d3c76bf` was resuming as the recovery owner with its
own held reservation. `reserveRunBudget` refused it because other tasks'
runs were recovering.
- Wave s7401: run `0a3a849d` failed after its result was accepted, with
a verified local stop. It had 10 receipts across 2 sources, all
incomplete with 0 tokens. It stayed "completed runs await accounting"
because closure only covered coordinators in terminal failure with no
result.

**What did you expect?**
A run without closure evidence holds new work only for a bounded time,
then settles visibly. An accepted-result run with a verified stop closes
like a terminal failure. A recovery that already owns admitted work can
finish.

**Steps to reproduce**
1. Restart the control plane during several native turns so that one
run's local stop is never verified.
2. Observe the run stay "recovering" and every new wake refused
indefinitely.

## What Changed

- `run-cost-accounting.ts`:
- A coordinator counts as settled when it ended in terminal failure
without a result, or when it has an accepted result. The verified-stop
and remote-termination closures use that rule, which covers the s7401
shape.
- A native run whose provider never started settles at once, like a
pre-provider failure, with no charge and its reservation released. Its
recovery has settled, no usage receipt was ever journaled (a provider
turn journals one as soon as it starts), and its local process never
launched or was verified stopped (wave s7403, run 3c1d7b70,
`session.open` timeout).
- New bound `ACCOUNTING_CLOSURE_TIMEOUT_MS`: the remote runner reconnect
grace (7 minutes) plus 3 minutes. A terminal native run with a settled
coordinator and no closure evidence settles at the bound:
- its known usage is recorded as unpriced (or estimated from the rate
card), with provenance evidence "closure evidence never arrived…";
    - it is marked `accountingClosureTimedOut`;
- a `cost.accounting_closure_timed_out` activity entry names the run.
- The reconciler selects these runs, and `readCostAccountingWork`
schedules a wake at the bound.
- `budget-exposure.ts`: a timed-out closure's final charge is exempt
from none of the unpriced-block exemptions. Under the `block` policy it
raises the normal budget notice ("recorded usage has no reliable price")
instead of a silent hold.
- `budgets.ts`, `budget-reservations.ts`,
`run-dispatch/adapters/postgres.ts`: when a validated recovery owner
continues admitted work, admission and both dispatch rechecks apply only
hard stops and pauses. Pending and recovering accounting holds still
gate new work.
- `doc/SPEC-implementation.md`: documents the bound, the accepted-result
closure and the provenance.

## Verification

- `closed-native-receipt-accounting.test.ts` (embedded Postgres). All of
these fail on master and pass here:
- s7401 shape (accepted result, verified stop, all receipts incomplete
with 0 tokens): settles and clears admission.
- A run without closure evidence: held before the bound with a scheduled
wake, then settled with the "closure evidence never arrived" provenance,
the `accountingClosureTimedOut` flag and an activity entry. Admission
clears under `allow`.
- Storm 4 `f879895f` shape (terminal failure, recorded process identity,
no stop event): held, then released after the bound.
  - The blocking policy still blocks on a timed-out closure.
- s7403 shape (no receipts, model unknown): a run whose process never
launched, or was verified stopped, settles at once with no charge and
its reservation released. With an unverified process it waits for the
bound.
- Storm 4 `6d3c76bf` shape: a recovery owner with its held reservation
reserves past another task's recovering accounting, while new work for
another task still waits.
- Existing suites pass locally: budget-enforcement-scoping,
budget-enforcement-worker, native-stop-accounting, cost-data-quality,
heartbeat-cost-accounting, run-cost-accounting, budgets-service. Server
typecheck passes.
- The other storm 4 terminal-failure runs (`2e477ae9`, `e4d2e14d`,
`6d3c76bf`, `7d21a44c`, `4bc49df0`, `1d85fbd9`) were already settled by
#19673 in that database (`cost_accounting_pending=false`) and were not
holding admission. `f879895f` alone held it.

## Risks

- After the bound, a run whose provider might still be running settles
as unpriced. Under the `block` policy that raises a hard-stop budget
notice, by design. Under `allow`, work continues and a late receipt
still reconciles.
- A recovery owner skips accounting holds, so concurrent recoveries can
spend while other tasks' accounting is unknown. Hard stops still apply,
consistent with best-effort budget enforcement.

## Model Used

- Claude Opus 5.5 (`claude-opus-5-5`), Anthropic, via Claude Code with
tool use (shell, file editing, embedded Postgres tests).

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have searched GitHub for duplicate or related PRs and linked
them above
- [x] I have either (a) linked existing issues with `Fixes: #` / `Closes
#` / `Refs #` OR (b) described the issue in-PR following the relevant
issue template
- [x] I have not referenced internal/instance-local Paperclip issues or
links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip`
URLs)
- [x] My branch name describes the change (e.g. `docs/...`, `fix/...`)
and contains no internal Paperclip ticket id or instance-derived details
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [ ] All Paperclip CI gates are green
- [ ] Greptile is 5/5 with no open P2s, recommendations, or follow-ups
- [x] I will address all Greptile and reviewer comments before
requesting merge

🤖 Generated with [Claude Code](https://claude.com/claude-code)

---------

Co-authored-by: Claude Opus 5.5 <noreply@anthropic.com>
2026-11-06 21:02:01 -06:00
18be7ac696 fix(server): retire idle native sessions before tenant sleep (#18988)
## Thinking Path

> - Paperclip lets people manage AI agents and their work.
> - Native agents can retain a warm session between useful turns.
> - That owner must close and save its files before the tenant can
sleep.
> - A failed close must keep the owner visible until retirement
succeeds.
> - This PR prepares idle resources under the exact current admission
hold, then takes a fresh safety snapshot.
> - Busy turns, uncertain closure and changed holds still prevent sleep.
> - CI also exposed a chat authorization race. The fix repeats full
authorization after the exact delivery commits.

## Linked Issues or Issue Description

Refs #18639 for local work and incoming wake boundaries. Related #18829
covers suspension receipts after admission.

**What happened?**

Idle preflight did not retire warm Native owners. Three failed-close
paths could forget an owner without proving that its provider stopped.
CI also found a false chat rejection when a delivery changed from
processing to processed between two validation reads.

**Expected behavior**

Retire only idle owners under the exact bounded hold. Wait for closure
and file collection. Retain failed owners. Scan safety after
preparation. Keep diagnostic reads passive. A newly committed chat
delivery must pass the full current authorization checks before
attestation succeeds.

**Steps to reproduce**

Finish a warm Native turn. Start an idle drain and request safety with
its owner ID. Delay or reject provider closure, or replace the hold
during preparation or scanning. The report must keep the instance awake.
For the chat race, commit the exact delivery between the first binding
read and its fallback read.

**Paperclip version or commit**

Current head `7f6f02b611dcf5a9a2b05173a44e9631eaf78058` normally
integrates actual master `1aa0c3639714f4976cfa56f95aae6e2b7d1235ac`. The
merge preserves every unrelated master path. Fresh exact-head CI and
complete review remain required.

## What Changed

- Retain uncertain Native owners after failed restart, idle timeout and
failed-turn closure.
- Prepare Native retirement through the existing heartbeat facade. Reuse
provider closure and stopped-file collection.
- Track preparation under the exact idle owner and expiry. Reject new
activity, changed holds and expired holds before and after awaited work.
- Take the final durable and local safety snapshot after preparation.
Keep diagnostic inspection passive.
- Cover ephemeral workspace retirement and useful next use, supported
plugin drain and SDK persistence, busy owners, failed closure and hold
replacement.
- Keep dedicated recovery storage explicit. Use the same validated
options for support and storage. Probe-free helpers retain the original
implementation bodies and preserve default callers.
- Complete the Native fixture through real retirement and budget
evaluation. Keep its rejection, file, credential, accounting and strict
NONE assertions.
- Repeat the complete chat authorization once if the fallback sees the
exact batch now processed. Preserve owner locks, principal and binding
checks, denial handling and the original retry deadline.

## Verification

- The support-mode regression reproduces one failure with four passes
under the old policy, then passes all five controls. It retains prior
allocation and cleanup cases. The explicit mode does not probe embedded
PostgreSQL or use an admin alias.
- The deterministic chat race baseline reproduces two authorized
failures with all four current-authority denial controls passing. Both
Slack and Discord use real PostgreSQL and the real authorization
function. The negative setup commits before the attestation transaction;
it does not claim to revoke access through a row lock.
- The product fix passes normal own App declaration emission with no
public declaration changes, plus both current normal owning compiler
programs (399 and 611 roots). The same six controls pass after the fix.
The full original file plus these controls passes all 30 tests with no
skips.
- The original controlled Native continuation passes: one test, no
failures or skips, 1.718 seconds in its body and 23.138 seconds in its
launcher. The original 40-second case and 180-second outer bounds are
unchanged. It verifies held closure, strict NONE, an ordinary authorized
comment, saved session/files, useful output, encrypted credentials,
accepted results and settled accounting. All ten observed processes and
groups close; worker connections and listeners reach zero. A separate
post-owner audit finds zero sessions; the successful owned database is
normally removed.
- Earlier preparation, HTTP, lifecycle, workspace and plugin controls
remain source-specific evidence. They are not a claim that every
final-tree test ran locally.
- The original CI assertion log is retained. The controlled race proves
a possible cause; the original CI SQL schedule was not captured. Two
other jobs lost their self-hosted runners and provided no test verdict.
Earlier asset timeouts, readiness failures and unexplained later
recovery remain separately recorded. No timeout, failure predicate or
authority check was weakened.

Focused public commands:

```sh
pnpm exec vitest run server/src/__tests__/idle-sleep-preparation.test.ts server/src/__tests__/instance-settings-routes.test.ts --maxWorkers=1 --no-file-parallelism
pnpm exec vitest run server/src/__tests__/heartbeat-reviewed-chat-binding.integration.test.ts --maxWorkers=1 --no-file-parallelism
```

Local database qualification uses fresh owned test databases on existing
PostgreSQL, bounded pools and one worker. The local allocation adapter
changes only database allocation for this test module; it runs normal
migrations and client cleanup. It is not part of the published source.
No new cluster is created.

Local acceptance measured the `0a69efa6` integration with the same
committed authorization bytes. The later normal master merge adds
startup-timeout classification and recovery changes. Those paths are
outside the controlled healthy-backend witness; retirement and
authorization hunks are preserved. Exact-head remote CI at
`7f6f02b611dcf5a9a2b05173a44e9631eaf78058` has completed with 56
successful contexts and four skips. The complete current Greptile
summary is5/5 with no new actionable findings; all review threads are
resolved. Ponytail’s current turn is explicitly paused without a
current-head verdict; earlier actual findings are fixed and accounted
for. No whole final-tree local repository build/test run, live-provider
restore or deployed suspension is claimed.

Actual master subsequently advanced to
`d5c4f7dd02d408a261cedd9a1926b9900a4aedc4`. Its local normal-merge
projection with this reviewed head preserves all20 owned paths and every
unrelated master blob and mode. Current Runner TypeScript, App
declarations and their full owning compiler programs pass. Focused
Native cleanup and warm-continuation composition checks are being
completed before merge; the new upstream suspension-retry behavior is
not inferred from the older controlled-backend witness. The remote PR
head remains unchanged.

## Risks

- Privileged idle preparation can close idle warm Native sessions. It
requires the exact current hold.
- Failed closure retains its owner and can keep the tenant awake until
normal retry succeeds.
- A changed hold cannot authorize sleep. Started cleanup remains tracked
until it settles.
- The chat repair can perform one extra full authorization read. It
keeps the existing deadline and does not grant authority from the
fallback query.
- Unsupported resources and active work retain their existing blockers.
This PR does not certify every transport, plugin or deployed host.

## Model Used

OpenAI `gpt-6.1-sol` produced the delegated changes and verification.
OpenAI Codex, based on GPT-6, performed managing review and integration.
Both used repository tools and code execution. The coordinator's exact
backend snapshot and context-window limits were not exposed.

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have searched GitHub for duplicate or related PRs and linked
them above
- [x] I have either (a) linked existing issues with `Fixes: #` / `Closes
#` / `Refs #` OR (b) described the issue in-PR following the relevant
issue template
- [x] I have not referenced internal/instance-local Paperclip issues or
links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip`
URLs)
- [x] My branch name describes the change (e.g. `docs/...`, `fix/...`)
and contains no internal Paperclip ticket id or instance-derived details
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [x] All Paperclip CI gates are green at exact head
`7f6f02b611dcf5a9a2b05173a44e9631eaf78058`
- [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups
at the exact current head
- [x] I will address all Greptile and reviewer comments before
requesting merge

---------

Co-authored-by: Paperclip <noreply@paperclip.ing>
Co-authored-by: Codex <noreply@openai.com>
2026-11-06 20:49:30 -06:00
DottaandClaude Opus 5.5 a5fe5deebe fix(environments): reclaim sandboxes left by a restart during acquire or teardown (#19696)
## Thinking Path

> - Paperclip is the open source app people use to manage AI agents for
work
> - Remote agent runs execute in provider sandboxes (for example
Daytona) that Paperclip creates and must clean up
> - Before each provider create, Paperclip saves a durable creation
intent (`sandbox_creation_operations`). Recovery uses it to find and
destroy a sandbox whose lease was never committed
> - Recovery waited 30 minutes after creation before it checked an
intent, because a live server could still be waiting for the provider
> - After a restart, the creating server is gone, but the intent still
waited the full 30 minutes. A short-lived or redeployed instance never
reclaimed those sandboxes
> - The teardown that follows has the same problem: a teardown claim
fences other sweeps for 15 minutes, and a restart during the claim kept
the sandbox alive until the fence expired
> - This pull request saves the server process identity with each intent
and each teardown claim, and ends the wait when same-host proof shows
that process exited
> - The benefit is that a restart during sandbox acquire or teardown no
longer leaves paid provider sandboxes behind

## Linked Issues or Issue Description

**What happened?**
A control-plane restart during Daytona sandbox acquire left the created
sandbox without an `environment_leases` row. In one restart chaos wave,
6 creation intents stayed `pending` with `next_attempt_at` = creation +
30 minutes. The wave ended (and its environment was deleted) before that
time, so 4 sandboxes stayed `stopped` in Daytona. Only Daytona's own
auto-delete would remove them. Two of the runs did not exist in
`heartbeat_runs` because they were non-run acquires; their intents still
had the run id.

**Expected behavior**
After a restart, each sandbox that this instance and company created,
with no committed lease and no live creator, is found by its exact
creation name and labels and destroyed through the plugin, after the
existing ownership checks. Sandboxes from another instance, another
host, or a live server stay untouched. Nothing acts org-wide.

**Steps to reproduce**
1. Start a Daytona-backed run.
2. Kill the server (SIGKILL) after the creation intent commits and
before the lease commits.
3. Restart the server. On master, the intent stays `pending` for 30
minutes and the sandbox stays in Daytona.
4. The regression tests in
`server/src/__tests__/sandbox-creation-operations.test.ts` reproduce
this with the controlled provider fixture.

Refs #18357 (added the durable creation intent this change completes).

**Paperclip version or commit**
master 07a548073a (live proof at 8d525dba7d + this change,
content-matched to the runner image)

## What Changed

- New `server/src/services/controller-process-identity.ts`: records the
server boot id, PID, a PID-space hash and the process start time. The
PID-space hash covers the hostname, the kernel boot id and the PID
namespace on Linux (the hostname and boot time elsewhere), so containers
that share a hostname but not a PID namespace never judge each other. It
proves that a recorded process exited only in the same PID space: the
PID is gone, or the PID is live with a definitely different start time.
Another PID space, an unreadable identity, an unidentified record, or
this server never counts as exited.
- `sandbox-creation-operations.ts`: each creation intent stores the
creating process and its settle deadline. Each recovery pass first moves
intents whose creator exited to "due now". If the early lookup finds no
sandbox before the settle deadline, the intent stays `pending` and
retries. It does not become manual reconciliation, because the provider
can still materialize an aborted request.
- `heartbeat/recovery.ts`: each pending-cleanup teardown claim stores
the claiming process, bound to its claim attempt id. Before the sweep
reads due leases, it ends the 15-minute fence of a claim whose claimer
exited. A newer claim from another path (workspace repair, export retry)
that kept an older record has a different attempt id, so it is never
released.
- Both recovery passes page through candidates with a stable id cursor.
Live, foreign or unidentified owners therefore cannot hide an abandoned
record behind one page.
- This covers every `createOwnedSandbox` caller, including non-task
probe and qualification acquires. Their intents have no issue and a
generated run id, which is why their run ids are missing from
`heartbeat_runs`.
- Recovery uses only the existing paths: exact
`paperclip-create-<operation id>` name and label inspection in the
plugin, `pending_cleanup` lease, and plugin teardown. No org-wide
listing or deletion was added.

## Verification

- Red, then green (controlled provider fixture, real embedded
PostgreSQL):
- `sandbox-creation-operations.test.ts` → "after the creating server
exits mid-acquire". Before the fix, the exited-creator case left no
cleanup lease. After the fix, the next sweep creates the
`pending_cleanup` lease and the teardown destroys the sandbox.
Counter-tests: a creation owned by this live server, another live
process, another host, or a committed lease is not inspected or
destroyed. An early "not found" keeps the intent pending, and a later
sweep still finds a late allocation.
- `heartbeat-pending-cleanup-sweep.test.ts` → "a teardown claim whose
server stopped mid-attempt". Before the fix, a lost claim blocked the
teardown. After the fix, it retries now. Counter-tests: claims from this
live server, another host, or without an identity keep their fence.
- Review regressions: "keeps the fence of a newer claim that kept an
earlier attempt's server record" and "pages past more fenced claims than
one sweep page" fail on the previous commit and pass now. "pages past
more unprovable creations than one page" guards the creation-side
cursor; the old unordered page happened to include the row, so it was
not red.
- After the review changes, `sandbox-creation-operations`,
`heartbeat-pending-cleanup-sweep`, `live-recovery-work` and
`environment-cleanup-work` pass (155 tests), and `tsc --noEmit` for
`server` passes.
- Related suites pass: sandbox-creation-operations (28),
environment-cleanup-work, task-creation-recovery,
native-startup-cleanup-recovery, sandbox-orphan-cleanup-spool,
plugin-warm-tasks, idle-completed-history (187 total), and the
pending-cleanup sweep suite. `tsc --noEmit` for `server` passes.
- Live Daytona restart chaos wave `w-20261107T001609-s11` (codex, A1,
K2+K4, concurrency 2, RC-06 masked, image `sha256:2767e91c…`, first fix
only): 4/4 tasks pass, all restart-crossing, R6 pass for every task,
`orphanSandboxes: []`. The server log and database show two creation
intents killed by K4 being reconciled right after restart and destroyed
through Paperclip. A third reclaimed sandbox lost its teardown claim to
the next K4 kill in the same second, so its 15-minute fence blocked the
environment delete. The second commit fixes that.
- Live Daytona wave `w-20261107T012048-s11`, same plan, both commits:
**4/4 pass, all restart-crossing, R6 pass for every task,
`orphanSandboxes: []`, no held leases.** The environment delete through
Paperclip succeeded with `remainingSandboxes: []`. One restart-time
sweep destroyed one sandbox through the plugin.

## Risks

- Same-host proof relies on PID liveness and process start time, as
native controller takeover already does. A false "exited" result is
limited to recovery running early. The plugin still checks exact name
and labels before any delete. An early not-found result stays pending.
- Multi-host deployments sharing one database keep the old deadlines,
because a different PID space is never judged. A redeploy into a new
host or PID namespace also keeps the old deadlines (fail closed).
- The live waves ran before the review commits. The review commits only
narrow when a record is judged, and they add paging.
- Intents and claims written before this change have no process
identity, so they keep the old deadlines.
- No schema change. The new fields live in existing JSON metadata.

> For core feature work, check [`ROADMAP.md`](ROADMAP.md) first and
discuss it in `#dev` before opening the PR. Feature PRs that overlap
with planned core work may need to be redirected — check the roadmap
first. See `CONTRIBUTING.md`.

## Model Used

- Claude Opus 5.5 (`claude-opus-5-5`), Anthropic, via Claude Code with
tool use (shell, file editing, test execution). Extended reasoning
enabled.

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have searched GitHub for duplicate or related PRs and linked
them above
- [x] I have either (a) linked existing issues with `Fixes: #` / `Closes
#` / `Refs #` OR (b) described the issue in-PR following the relevant
issue template
- [x] I have not referenced internal/instance-local Paperclip issues or
links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip`
URLs)
- [x] My branch name describes the change (e.g. `docs/...`, `fix/...`)
and contains no internal Paperclip ticket id or instance-derived details
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [ ] All Paperclip CI gates are green
- [ ] Greptile is 5/5 with no open P2s, recommendations, or follow-ups
- [x] I will address all Greptile and reviewer comments before
requesting merge

🤖 Generated with [Claude Code](https://claude.com/claude-code)

---------

Co-authored-by: Claude Opus 5.5 <noreply@anthropic.com>
2026-11-06 20:39:34 -06:00
DottaandPaperclip d5c4f7dd02 fix: preserve shared Git sources during online workspace migration (#19688)
## Thinking Path

> - Paperclip preserves the work produced by its agents.
> - Remote workspace migration must preserve legacy Git history and
local edits.
> - Linked checkouts can share administration and objects with other
tasks.
> - A task lock alone cannot exclude writers of a shared or borrowed
store.
> - The online source owner must derive and retain the full physical
ownership closure.
> - This change reuses task, project, lifecycle and finalizer locks for
that closure.
> - Idle legacy Git work can then migrate while unrelated remote turns
continue.

## Linked Issues or Issue Description

Refs: #19642.

**What happened?**

Online migration keeps legacy Git sources blocked because several task
checkouts can share a project base or a private Git cache. A read-only
source observation found 160 pending Git records, 120 distinct paths and
nine common stores. Its largest project cohort contained 126 records and
110 task owners. An ordinary-directory fence cannot preserve these
sources by itself.

**Expected behavior**

Derive the physical source owners from stable Git metadata. Hold their
existing source and lifecycle keys through publication. Retain all
history and recovery obligations. Reject foreign aliases, unknown stores
and changed sources. Let unrelated object-backed work continue.

**Steps to reproduce**

1. Create a managed project checkout and linked task worktrees.
2. Keep a settled prepared recovery source on a sibling task.
3. Keep unrelated remote work running.
4. Request an online import of an idle leaf checkout.
5. The existing owner keeps the shared source blocked.

**Paperclip version or commit**

This branch builds on merged #19642 (`7ac99718a4`) and fresh master
`fb3cf1a072`. It adds the Git closure. It does not add a writers-stopped
shortcut.

**Deployment mode**

Hosted native Runner with remote workspace storage. Local qualification
uses owned synthetic Git repositories, disposable PostgreSQL databases
and the actual archive and storage owners.

## What Changed

- Read bounded stable Git pointers, common-directory metadata and local
alternates. Derive the complete physical source ownership cohort.
Preserve all object stores.
- Retain common and borrowed store owners in preparation, lifecycle,
runtime, expiration and actual reopen paths. Keep company boundaries and
the existing 128-key bound.
- Hold exact sibling native recovery proofs under their existing
physical finalizer keys. Recheck descriptors, allocations, recovery
actions and source identities before capture and publication. Preserve
original states and warnings.
- Require leaf-first nested imports. Reuse the existing immutable child
download, restore and source comparison before parent exclusion.
- Bind the self-contained archive owner to the held Git namespaces. Keep
its three walks, history normalization, fsck, bytes and digest format.
Reject bare, detached, network, unknown or changed Git storage.
- Check both foreign path fields. Keep foreign metadata private.
Document the proof, bounds, source observation and remaining eligibility
limits.

## Verification

- Final revision `2934e41c923b93e16508b978c849b747c86be645`: all checks
are terminal, with 56 successful and four skipped, zero failures and
zero pending. The [required CI
aggregate](https://github.com/paperclipai/paperclip/actions/runs/42326464408/job/128266279210)
passed. Build, types, all server/Runner/serialized suites, end-to-end
aggregate and Snyk passed. [Fresh exact-head Greptile
review](https://github.com/paperclipai/paperclip/pull/19688#issuecomment-6699760104)
is 5/5 with no open threads. GitHub reports MERGEABLE and CLEAN.

- Review then found two correctness gaps: an ordinary managed directory
inside an unrelated host repository was blocked, and a Git parent could
miss a completed nested operation after its child snapshot became
missing or deleted. Three actual-owner regressions reproduced both gaps
in 9.70 seconds. The corrected owner passes 12 focused cases in 17.08
seconds. It imports and restores only the ordinary root bytes, preserves
the outer repository, rejects both missing/deleted child receipts before
a parent journal, and retains valid/changed child coverage and
private-cache contention. Its wrapper exited 0 and cleanup completed.
The first bootstrap attempt failed before tests ran because the host
exhausted its 32 shared-memory segment limit; no shared services were
stopped and no pass is claimed for that attempt. The final qualified
source/test type graph, module boundaries and diff checks pass.
- Receipt scans keep canonical path resolution. A lexical SQL prefix can
omit children reached through symlinked ancestors. The observed full
metadata closure completed in 1.17 seconds; no measured bottleneck
justifies weakening that alias proof. Writer admission still rejects
uncertain Git ownership before mutation. Expiration returns its typed
skip, and reopen returns its structured failure. Runtime and lifecycle
do not bypass an unknown source. No broad error-contract change was
added.

- Full CI at `720104ea975e` exposed five existing boundary cases across
three server shards. Four exact cases reproduced locally as failures in
25.98 seconds. Reopen now preserves its structured failure when source
inspection rejects the path, without reconstructing it. Runtime
recognizes only the exact regular ignore-only `.git/info/exclude`
fragment; migration still rejects that fragment. The original
arbitrary-path and file-URL import/delete-host/resume fixtures keep both
supported input forms and use the genuine offline setup path after their
sole writer finishes. The production mode gate is unchanged. A new
real-owner control proves the offline flag still rejects a running
legacy database writer.
- The final focused run passed all ten cases across four suites in 22.75
seconds, including all five CI failures, invalid-pointer admission,
fragment rejection, offline writer exclusion and actual nested reopen
lock ordering. Its wrapper exited 0 and cleanup completed. The known
invalid-pointer case remains fail-closed; the separate unexpected-I/O
diagnostic retains safe error metadata without command text or
credentials. Existing Git stderr redaction coverage remains intact. The
final metadata reader suite passed 20 cases in 2.68 seconds. The
qualified server/test source type graph, module boundaries and diff
checks pass. No production assertions or timeout defaults were weakened.
Fresh CI and review are required for the repair revision.

- A later review found that the ordinary early return still used only
one foreign path field. The actual ordinary providerRef-only regression
failed as incorrectly eligible. One source-path owner now enumerates
both local locators for company/foreign ordinary and Git scans, layout
checks, early admission, lifecycle/reopen/runtime and
expiration/move/preparation retention. Capture and display keep their
original preferred path. The actual owner canary passed 49 cases across
two suites in 109.15 seconds. It covers
cwd-only/ref-only/different/symlink locators, same-company mismatches,
foreign owners, lifecycle ordering, Git/recovery imports and
expiration/reopen. Three selected-locator fallback cases also failed
before their guard; the final eight-case control passed in 31.05
seconds, including the configured alias and valid import/private-child
controls. All wrappers exited 0 and completed cleanup. The
metadata/locator suite passed 19 cases. The final source/test type
graph, module boundaries and diff checks pass.

- Review found two P1 gaps. Both configured-directory symlink cases
failed before canonicalization. The actual parent import lost an
already-imported child's unique private cache and failed its archive
fence instead of retaining that owner. The corrected real-owner canary
passed four cases in 20.78 seconds: configured symlink runtime
provisioning, private-cache contention before the parent journal,
successful parent publication after release, and unchanged/changed child
coverage. The metadata suite passed 15 cases in 4.14 seconds. Both
wrappers exited 0 and cleanup completed.
- A fresh source read-only observation found 160 pending Git records and
nine common stores. An additional exact receipt query found 1,243
completed migration receipts and 557 nested source paths under pending
Git roots. All 126 records in the largest project were present in the
captured Git metadata set. For all 110 present candidate workspace
records, the derived closure fits the unchanged 128-key cap. The worst
case needs 110 issue keys and one project key, with 17 keys of headroom.
Its 173 imported children introduce no physical issue owner outside
those 110 logical task owners. This checks the observed key bound only.
It does not claim migration eligibility or a coherent snapshot.
- The initial stacked CI did not run four Runner test lanes: trusted
master passed new --package-lane/--native-server options to the old base
lane script. The branch is now rebased onto actual merged master and
retargeted before synchronization. It includes the canonical current
lane parser without an unrelated Runner patch. Fresh new-head CI is
required.

- The actual importer/source owner run passed 36 cases across three
suites in 187.75 seconds. It covers sibling prepared recovery, unrelated
running remote work, common-cache contention, changed
coordinator/allocation/path state during upload, exact nested coverage,
dirty unpushed work, and existing expiration/reopen owners. Wrapper exit
0 and cleanup completed.
- A separate previously hanging lifecycle-worker restore passed in 17.33
seconds with the unchanged 15-second test-body limit. An earlier run
timed out in three expiration/reopen cases and blocked cleanup; its
wrapper later exited 1. These failures remain recorded. They are not
counted as passes.
- Two boundary controls first failed: a foreign providerRef-only alias
was incorrectly eligible, and actual reopen did not admit its distinct
cache owner at the initial source boundary. The narrow guards now
inspect both foreign locators and derive physical Git keys before the
raw lifecycle transaction. The foreign alias and existing real nested
reopen contention passed. The private-cache control first retained
contradictory recorded source provenance and stayed fail-closed after
release. The corrected present legacy-worktree fixture passed in 12.61
seconds. These failed attempts remain recorded; they are not passes.
- The metadata reader and serialized/local archive controls use actual
Git repositories. They compare archive bytes and digests, remove every
original source, restore staged and unstaged work, and run fsck. The
metadata reader passed 13 cases in 2.85 seconds. The local/serialized
archive controls passed nine cases in 9.27 seconds. All processes exited
0. An additional actual importer control changed a relative commondir
pointer to the absolute name of the same store during upload.
Publication was rejected, the uploaded journal remained available, and
original files stayed intact (one case, 5.86 seconds; wrapper exit 0 and
cleanup complete).
- The final rebased full local server/test type graph passes with
db/shared/Runner source aliases because reused dependency declarations
predate new master exports. The first rebased attempt reported those
stale declaration fields/tables, and is not counted as a pass. Module
boundaries and diff checks pass. Standard package builds, types and
broad regression checks remain required in CI.
- No hosted import, admission hold, cancellation, provider mutation,
source filesystem write or shared-cache Git command was performed for
this change. The source observation is read-only and is not a locked
eligibility proof.

## Risks

- A missing writer owner could make physical source exclusion
incomplete. Existing mutation owners retain the same
company/task/project keys, and uncertain metadata fails closed.
- A project can contain a large cohort. Limits remain finite. A bound
failure keeps the source blocked.
- Bare, detached, unowned or network Git stores remain blocked online.
Missing archived sources retain their existing authenticated
reconstruction path.
- Exact recovery proofs preserve authority and obligations. They do not
infer provider termination or mark a prepared descriptor finalized.
- This change does not claim all observed Git records are immediately
eligible. Existing preparation, provider, recovery, runtime and
source-change blockers remain.

## Model Used

OpenAI GPT-6 through Codex, with reasoning, tool use and code execution.
The host does not expose a more specific backend model ID or
context-window size.

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have searched GitHub for duplicate or related PRs and linked
them above
- [x] I have either (a) linked existing issues with `Fixes: #` / `Closes
#` / `Refs #` OR (b) described the issue in-PR following the relevant
issue template
- [x] I have not referenced internal/instance-local Paperclip issues or
links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip`
URLs)
- [x] My branch name describes the change (e.g. `docs/...`, `fix/...`)
and contains no internal Paperclip ticket id or instance-derived details
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [x] All Paperclip CI gates are green
- [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups
- [x] I will address all Greptile and reviewer comments before
requesting merge

---------

Co-authored-by: Paperclip <noreply@paperclip.ing>
2026-11-06 20:08:19 -06:00
DottaandClaude Opus 5.5 d26372dc8a test(restart-chaos): add a result trigger and recovered-run comment-wake guards (#19689)
## Thinking Path

> - Paperclip is the open source app people use to manage AI agents for
work
> - The restart chaos harness kills the control plane at chosen moments
and grades whether each task still finishes correctly
> - One wave lost a user's follow-up comment after a kill that landed
after the run accepted its result but before the run settled
> - No existing trigger aims a fault at that moment, so the case was
hard to reproduce on purpose
> - The recovery path that settles such a run had no regression test
that covers the saved comment
> - This pull request adds a `result` trigger to the harness and a
regression test for the recovery path
> - The benefit is that the harness can aim faults at the
result-accepted window, and a change that drops, repeats, or re-wakes a
saved comment fails a test

## Linked Issues or Issue Description

**What happened?**
In a restart-chaos storm wave, a user posted a comment while a native
run was active. A hard kill (K1) landed after the run accepted its
result and before the run settled. The run settled `succeeded` and the
task stayed `done`, but no follow-up run read the comment.

**Steps to reproduce**
The original failure did not reproduce. Three targeted waves ran 12
tasks with K1 at comment time or in the new result window. Every
follow-up comment was consumed exactly once. The new regression test
also passes on current `master`. The test and the trigger guard the path
and do not claim a fix.

**Expected behavior**
A comment posted during a run is consumed exactly once after the run
ends, including when restart recovery settles the run.

## What Changed

- `tests/restart-chaos`: add `--triggers result` (C1 only). K1 fires 0–3
s after the run that received the follow-up proposes or accepts its
result (`run.result.proposed` or `run.result.accepted`). The fault fires
only while that run is still `running`: the observer checks the latest
sample and rereads the runs right before dispatch. A run that settled
during the delay, or a follow-up posted at rest, records a `result`
miss. Add poll-driven unit tests for these cases and a README row.
- `server/src/__tests__/native-run-projection-work.test.ts`: add
embedded Postgres tests in which background recovery, not the executor,
settles the run (projection, environment settlement, and
deferred-receipt workers), with a deferred user comment and an active
local lease left by the killed executor. The tests check:
- The comment is promoted into exactly one follow-up run, and a second
restart adds none.
- A comment the run already received as a same-turn steer is not woken
again. The other saved comment still is.
- A queue whose only comment was steered stays cancelled, and no
follow-up starts.
- A Retry click does not consume the comment a second time. A click that
observed the source is stale. A click that observed the follow-up joins
it.

## Verification

- `cd tests/restart-chaos && npx vitest run --config vitest.config.ts`
(96 tests pass)
- `cd server && npx vitest run
src/__tests__/native-run-projection-work.test.ts` (54 tests pass)
- Live, local, ACPX Claude, Codex and OpenCode: `node
cli/node_modules/tsx/dist/cli.mjs tests/restart-chaos/main.ts --env
local --workloads C1 --triggers comment --faults K1 --adapters
codex,claude,opencode --tasks 4 --concurrency 2 --rc06-masked` passed 4
of 4. Two waves with `--triggers result` consumed each follow-up exactly
once. One task in those waves found a separate defect: a kill 1.4 s
after the result commit left the run `running` behind the dead
controller's 20-minute finalization lease. A separate pull request fixes
that defect.

## Risks

- Low risk. These are test and harness changes only. No production code
changes.
- The `result` trigger depends on the observer's poll interval (about 3
s), so the exact kill point within the window varies.

## Model Used

- Claude Opus 5.5 (`claude-opus-5-5`), Anthropic, run as an agent in
Claude Code with tool use (shell, file editing, local test execution).

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have searched GitHub for duplicate or related PRs and linked
them above
- [x] I have either (a) linked existing issues with `Fixes: #` / `Closes
#` / `Refs #` OR (b) described the issue in-PR following the relevant
issue template
- [x] I have not referenced internal/instance-local Paperclip issues or
links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip`
URLs)
- [x] My branch name describes the change (e.g. `docs/...`, `fix/...`)
and contains no internal Paperclip ticket id or instance-derived details
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [ ] All Paperclip CI gates are green
- [ ] Greptile is 5/5 with no open P2s, recommendations, or follow-ups
- [x] I will address all Greptile and reviewer comments before
requesting merge

🤖 Generated with [Claude Code](https://claude.com/claude-code)

---------

Co-authored-by: Claude Opus 5.5 <noreply@anthropic.com>
2026-11-06 19:53:58 -06:00
DottaandPaperclip 5e4d24b6c8 fix(recovery): preserve admitted workspace on native restart (#19693)
## Thinking Path

> - Paperclip manages AI agents and their work.
> - A Retry can admit a new workspace before native provider work
starts.
> - The native execution input records that admitted workspace.
> - A server restart must recover the same run under that recorded
contract.
> - Retry readiness previously evaluated fresh admission again after the
run had started.
> - This could replace the workspace and make the retained lease fail
its correct identity checks.
> - This change keeps the admitted workspace and leaves reattachment
authority with the existing lease and controller checks.

## Linked Issues or Issue Description

**What happened?**

A native run started by Retry could do useful work, then fail after a
server restart. Preparation evaluated the original fresh-workspace
receipt again. It reserved a replacement workspace under the Retry
intent ID. The existing runner still owned the original workspace, so
setup failed with `native_remote_recovery_lease_mismatch`.

**Expected behavior**

Restart recovery must retain the workspace recorded in the same run's
native execution input. A later configuration or admission decision must
not replace it.

**Steps to reproduce**

1. Admit a remote workspace for a Retry run.
2. Persist its native execution input and keep its original controller
and environment lease records.
3. Recover the same run while its canonical Retry receipt selects fresh
admission.
4. Preparation must reach the original lease with the original
workspace.

Related: #19340 preserves verified Retry workspaces. This change handles
an already admitted native run instead of selecting a workspace for a
new turn. Public duplicate searches for admitted/fresh workspace restart
found no matching repair.

## What Changed

- Stop fresh admission when a parsed native input names a real workspace
in the run's company.
- Validate the company, run, agent, and task binding before using that
input.
- Keep synthetic run-ID bootstraps on the existing admission path. Hold
missing real bindings.
- Test both recovery-action and ordinary user-Retry receipts against
real workspace, controller, and lease rows. Check malformed, foreign,
missing and opaque bindings, synthetic bootstrap behavior, and no-files
API controllers.
- Align the resume-owner fixture with the real transient run-ID binding.
Give each invocation a unique issue label so a CI test retry cannot mask
the original failure.

## Verification

- RED on unchanged production: the new reservation regression failed
with `native_remote_recovery_lease_mismatch` instead of reaching the
admitted lease.
- Review RED: an opaque task-workspace ID reached the UUID query. The
new guard returns the controlled missing-admission error before the
query.
- Review RED: a valid no-files Cursor controller was treated as a
missing task workspace. The existing task-workspace projection now keeps
that controller on its prior path.
- Clean final production-source regression: both restart cases passed in
a fresh embedded PostgreSQL cluster. These cover both receipt paths and
all binding, bootstrap and API-controller controls.
- The initial focused checks passed 11 cases. Seven existing ordinary
Retry and environment selection cases also passed. A later combined
final-base run had 17 assertions pass but failed workspace teardown at
90 seconds and task-Retry setup at 30 seconds. That attempt is retained
as a failure; the two new restart cases then passed alone with exit 0.
Earlier PostgreSQL support-probe failures are also retained as setup
failures.
- The worktree's own Runner, shared and SDK dependencies were built. All
seven server typecheck layers passed for the final production source.
The final additional commit changes only the existing resume-owner
fixture.
- Required CI found an invalid fixture binding in [server shard
11](https://github.com/paperclipai/paperclip/actions/runs/42322379917/job/128250151095).
The first attempt failed before lease acquisition because the fixture
named a random workspace with no row. The automatic test retry then
failed on its fixed issue label. The fixture now uses the transient
run-ID contract and a unique label. Its exact original acquisition and
owner-release assertions pass locally with exit 0.
- Whitespace and added-code-comment checks passed.
- Final commit `f0e41e8c6b949f43863ec60fc7b96b97025eafc6` passed
required
[CI](https://github.com/paperclipai/paperclip/actions/runs/42323826555):
56 successful checks, four intended skips, one neutral result, and no
pending or failed checks. Greptile and Ponytail both gave this exact
head 5/5 with no actionable findings. No review threads remain open.
Hosted deployment and original-task recovery remain separate from local
proof.

## Risks

Malformed or missing native admission records now hold rather than
selecting fresh work. Valid initial admissions and synthetic run-ID
bootstraps retain their prior path. The change does not grant
reattachment authority or settle provider effects. Existing controller,
workspace writer, lease, Stop, and trust checks still apply. No API,
schema, or configuration contract changes.

## Model Used

OpenAI GPT-6 family through Codex. The runtime does not expose the exact
serving model ID or context window. No model override was used. The
assistant used reasoning, code editing, shell tools, and local tests.

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have searched GitHub for duplicate or related PRs and linked
them above
- [x] I have either (a) linked existing issues with `Fixes: #` / `Closes
#` / `Refs #` OR (b) described the issue in-PR following the relevant
issue template
- [x] I have not referenced internal/instance-local Paperclip issues or
links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip`
URLs)
- [x] My branch name describes the change (e.g. `docs/...`, `fix/...`)
and contains no internal Paperclip ticket id or instance-derived details
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [x] All Paperclip CI gates are green
- [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups
- [x] I will address all Greptile and reviewer comments before
requesting merge

---------

Co-authored-by: Paperclip <noreply@paperclip.ing>
2026-11-06 19:37:48 -06:00
DottaandPaperclip b94963f91e fix: retry temporary repository catalog failures before dispatch (#19690)
## Thinking Path

> - Paperclip manages AI agents and their work.
> - A task must check repository access before it starts agent work.
> - Repository discovery can fail while the user's existing grant
remains valid.
> - Discovery previously replaced a known temporary provider refusal
with an empty catalog.
> - The task then reported lost access and did not schedule recovery.
> - This change keeps temporary discovery failures distinct and uses the
existing bounded retry owner.
> - Each retry must pass a fresh access check before it can use the
saved repository.

## Linked Issues or Issue Description

**What happened?**

A task with a saved catalog repository stops with an access denial when
GitHub returns an exhausted-quota response or HTTP 503. The task does
not start provider work, but the discovery layer discards the temporary
failure and returns an empty catalog.

**Expected behavior**

Known temporary failures before provider dispatch use the existing
bounded infrastructure retry. The successor checks the same responsible
user's current grants and reads the saved files only after fresh
discovery succeeds. A completed denial remains terminal.

**Steps to reproduce**

1. Bind a task to an authorized catalog repository with saved local
changes.
2. Make its authorized GitHub discovery return HTTP 403 with zero
remaining quota, or HTTP 503.
3. Let discovery recover before the existing retry deadline.
4. Observe one successful successor using the original repository bytes.

**Paperclip version or commit**

Reproduced on master at `b8d94b3ad1`. A search found no existing PR for
this temporary catalog failure.

## What Changed

- Keep a safe typed failure for known HTTP availability and quota
responses. Honor the later provider deadline and bound it to one day.
- Propagate that failure only when fresh discovery cannot find a
required repository. Preserve successful partial catalogs and the
existing connection setup error contract.
- Classify the failure only before provider dispatch. Reuse existing
bounded retry, interaction ownership, and bootstrap settlement rules.
- Keep current grant checks, saved repository selection, normal Stop,
and provider-started failure policy.
- Keep provider deadlines when accepted interactions use their own retry
owner. Recognize secondary HTTP 403 rate limits with valid retry advice
while keeping ordinary permission denials terminal. This matches [GitHub
rate-limit
guidance](https://docs.github.com/en/rest/using-the-rest-api/rate-limits-for-the-rest-api).
- Keep direct repository request responses outside the automatic
bootstrap retry contract. Test successful partial discovery and
missing-required-repository recovery with two independent eligible
connections.
- Document task repository discovery recovery.

## Verification

- Behavioral RED: real heartbeat and PostgreSQL fixtures reached actual
HTTP 403 and503 discovery responses, started no adapter, and found zero
successors instead of one. Both cases failed before the production
change.
- Behavioral GREEN: both cases waited for the real retry deadline, used
the normal queue worker, ran the controlled adapter once after fresh
discovery, and read the original saved bytes. Two cases passed in 74.73
seconds. No external model or provider request was made.
- Deadline RED/GREEN: a combined Retry-After and quota-reset response
initially selected the earlier deadline. The regression now selects the
later deadline.
- Initial repair at `d8d4714a18` (same production source as
`018e8c52d345d79972d7907468080dc9908c299f`): seven affected files
passed, 69 cases in 185.16 seconds. That test-only cleanup then passed
all five real-database acceptance cases in 134.76 seconds.
- Commands: `pnpm exec vitest run` with
`heartbeat-repository-catalog-recovery.test.ts`,
`github-catalog-timing.test.ts`, `github-grant-metadata.test.ts`,
`project-repositories-persistence.test.ts`,
`task-workspace-repositories-persistence.test.ts`,
`github-repository-catalog-failure.test.ts`, and
`services/heartbeat/retries.test.ts` from the server source tree. The
acceptance file also ran fresh at `018e8c52d3`. A fresh five-case run
after the P1 repairs passed at `f490ca6b78` in 122.06 seconds. The final
eight-case file passed fresh at
`e5b2efab11919467850f55fd6345317132b9b672` in 124.62 seconds, using real
owned embedded PostgreSQL. It covers automatic recovery with saved
bytes, genuine denial, provider-started classification, normal Stop, the
direct HTTP route, and both partial-catalog outcomes.
- Review repairs at `f490ca6b787cf77df96d3d6edfb2ab9115eb19a6`: both
reported P1s reproduced RED. The real database interaction scheduler
chose a retry after 24 seconds before the provider deadline of one hour.
A secondary HTTP 403 with valid Retry-After lost its retry
classification. The narrow fixes then passed 44 cases across scheduler,
header, and metadata-contract files in 37.66 seconds.
- A real direct request through the task workspace router and normal
error middleware reproduced a 500 response instead of the existing 403.
Required-ID retry mode now applies only to admission and its rechecks.
The route and both two-connection partial-catalog cases then passed in
29.09 seconds. Both partial cases use actual owned grants and credential
bindings.
- All seven server type layers passed again at final head
`e5b2efab11919467850f55fd6345317132b9b672`. The affected test type layer
passed again after the test-only cleanup. Environment: macOS arm64, Node
26.4.0, pinned pnpm 9.15.4, Vitest 5.0.3, owned disposable PostgreSQL 18
on loopback. The current checkout's shared packages, plugin SDK, and
Runner were built first.
- One local acceptance run under concurrent owned test/typecheck load
hit the unchanged 15-second Stop-case timeout. Its four other cases
passed. The unchanged complete file then passed serially. The timeout
receipt remains recorded; no assertion or timeout was weakened.
- A provider-started failure retains the existing generic adapter retry
policy. It does not receive the catalog no-provider certificate or a
provider retry deadline. Fixture cleanup cancels its scheduled retry
through the normal owner.
- Final head `e5b2efab11919467850f55fd6345317132b9b672` has 59
successful checks, 3 allowed skips, no pending or failed check, and
Greptile 5/5 with no open findings. [Completed CI
workflow](https://github.com/paperclipai/paperclip/actions/runs/42322202977).
- Additional local diagnostic for the late recovery-owner advisory: on
unchanged `e5b2efab`, the dedicated scheduler returned `retry_exhausted`
with attempt 3/max 2. The normal stranded sweeper then escalated once,
created no extra run, and started no adapter, even after catalog access
recovered. One case passed in 17.32 seconds. The existing
failed-predecessor path delegates to that bounded scheduler and returns;
it does not enter a new generic retry budget. No production registry
change was made. This diagnostic was not a CI case. Its local harness is
preserved separately at `74e3854eea3f7c4121fdcd9c8a8ad522cd8c7477` on
`codex/catalog-exhaustion-acceptance`; its production source is
identical to `e5b2efab`.
- Module boundary and whitespace checks passed.

## Risks

- A temporary failure from another eligible connection can delay a truly
missing repository for the existing limit of two attempts. It cannot
grant access.
- Unknown network errors and genuine access denials retain their
existing behavior. This change handles known HTTP failures only.
- Historical provider quota causality is unproven. This repair has a
separate local producer regression. It does not rewrite past failures or
queued user intents.
- Acceptance uses real local database and heartbeat owners with
controlled HTTP and adapter fixtures. It does not claim a live
native-provider recovery.

## Model Used

OpenAI GPT-6.1 Codex (`gpt-6.1-sol`), with high reasoning, repository
tools, code execution, and controlled local PostgreSQL tests. The host
did not expose a context-window size.

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have searched GitHub for duplicate or related PRs and linked
them above
- [x] I have either (a) linked existing issues with `Fixes: #` / `Closes
#` / `Refs #` OR (b) described the issue in-PR following the relevant
issue template
- [x] I have not referenced internal/instance-local Paperclip issues or
links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip`
URLs)
- [x] My branch name describes the change (e.g. `docs/...`, `fix/...`)
and contains no internal Paperclip ticket id or instance-derived details
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [x] All Paperclip CI gates are green
- [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups
- [x] I will address all Greptile and reviewer comments before
requesting merge

---------

Co-authored-by: Paperclip <noreply@paperclip.ing>
2026-11-06 19:29:40 -06:00
DottaandClaude Opus 5.5 06bbcea12f fix(budgets): price lost receipts and stop restart-derived accounting from hard-stopping companies (#19673)
## Thinking Path

> - Paperclip is the open source app people use to manage AI agents for
work
> - Budget admission and run accounting decide whether any task in a
company may start
> - #19497 made pending accounting an admission hold and settles a
stopped run's lost receipt as an unpriced charge
> - Restart-chaos waves still stopped whole companies. A lost Codex
receipt with complete token counts settled as unpriced because the rate
card only prices complete receipts. Under the default blocking policy
that hard-stopped the company at 0.38 of 3000 cents. In another storm, a
resumed run's continuation was refused by its own task's
recovering-accounting hold. Separately, unpriced charges with zero
tokens or a known partial cost hard-stopped a company at 120 of 2000
cents
> - This pull request prices a lost receipt's observed usage from the
rate card, lets a task's continuation pass its own recovering
accounting, and stops restart-derived or evidence-free unpriced charges
from tripping the blocking policy
> - The benefit is that a restart no longer pauses a company by itself,
while genuinely unpriced usage still blocks

## Linked Issues or Issue Description

Follow-up to #19497. Refs #19606.

**What happened?**
- Wave A (K6 crash loop): native Codex run `5037b8d1` was killed
mid-turn. Its receipt was lost, but `usage_json` held gpt-6.1-sol with
28690 input and 220 output tokens. The charge was written
`cost_status=unpriced`, `pricing_provenance.source=unknown`, because
`priceCodexReceipt` returns early when `!receipt.complete`. 0.2 s later
the default `unpricedUsagePolicy=block` opened a hard incident at 0.38
of 3000 cents. The company was paused, and 6/6 tasks were blocked with
`canRetry=false`.
- Wave B (K1 storm): Claude run `2a7a8abf` resumed after the restart.
`reserveRunBudget` refused its interaction continuation with "New work
must wait while a native run recovers its unfinished accounting", so the
task could not settle its own recovery. A 0-token unpriced charge and an
unpriced charge with a known 0.81-cent cost then hard-stopped the
company at 120 of 2000 cents.

**What did you expect?**
A restart-lost receipt with known numbers is priced as an estimate, and
no restart-derived accounting state pauses a company by itself. A task's
own continuation is never held by its own accounting. Real usage above
the limit, and genuinely unpriced usage, still stop work.

**Steps to reproduce**
1. Give a company a hard-stop budget with the default unpriced-usage
policy.
2. Kill a native Codex turn after it has reported tokens, so the final
receipt is lost and native recovery ends in terminal failure with a
verified stop.
3. Observe an unpriced charge for known tokens, a hard incident, and a
paused company.

## What Changed

- `run-cost-accounting.ts`: when a lost receipt settles and its usage
has known tokens and no known cost, price it with
`priceCodexReceipt`/`priceAnthropicReceipt` as a complete per-run
checkpoint. The charge is `estimated`, its provenance keeps the
rate-card source, and its evidence says "final receipt lost; observed
usage is a lower bound". The estimate is also written to the run's usage
so a later receipt reconciles against it. Zero observed tokens, and
per-model usage, stay unpriced (unknown is never shown as zero, and
aggregate totals never take one model's rate).
- `budget-exposure.ts`:
- The pending/recovering accounting hold excludes the run being admitted
and earlier runs of the same task (same `native_issue_id`). A task's
continuation and finalization can therefore settle its own accounting.
Other tasks stay held, and those runs still count as spend.
- The blocking unpriced-usage policy no longer counts these unpriced
charges: the settled final charge of a lost receipt (restart-derived,
any usage; later growth still counts), a charge with a known partial
cost, and metered API or subscription billing with no observed tokens.
Unknown billing with no tokens (for example Cursor Cloud) and
complete-receipt usage that has no price still block.
- `budgets.ts` / `budget-reservations.ts`: admission accepts the
admitted `runId` and passes it to the exposure read. `reserveRunBudget`,
the final dispatch recheck and the read-only admitted recheck all supply
it, so a continuation that reserves can also dispatch.
- Daytona wave s12 (run f1d98917, a blocked remote recovery with a
0-cent held reservation and every lease destroyed) is closed by #19606.
A Retry for that same task passes the hold through the same-task
exclusion here.

## Verification

- `closed-native-receipt-accounting.test.ts` (embedded Postgres):
- Lost Codex (gpt-6.1-sol) and Claude (claude-sonnet-5) receipts with
observed tokens settle as `estimated` rate-card charges with the
lower-bound evidence. The company stays active and admission is clear
under the blocking policy.
- A lost receipt for a model with no rate card stays unpriced but opens
no incident and no pause.
- A task's continuation reserves budget past its own recovering
accounting, while another task's run is still held.
- Unpriced charges with no tokens on metered billing, or with a known
partial cost, do not hard-stop.
  - Complete-receipt usage with no price still blocks.
  - The six new cases fail on master and pass with this change.
- Existing budget and accounting suites pass locally:
budget-enforcement-scoping, budgets-service, heartbeat-cost-accounting,
run-cost-accounting, native-stop-accounting, cost-data-quality,
budget-live-attempts, budget-live-usage. Server typecheck passes.

## Risks

- A lost receipt's estimate is a lower bound. The provenance says so,
and a later complete receipt still reconciles.
- Restart-derived unpriced charges no longer trip the blocking policy.
Usage lost with a killed provider is not counted against that policy,
which is consistent with budget enforcement being best effort.
Unknown-billing and complete-receipt unpriced usage still block.
- The same-task exemption relies on `native_issue_id`. Legacy runs
without it keep the old behavior.

## Model Used

- Claude Opus 5.5 (`claude-opus-5-5`), Anthropic, via Claude Code with
tool use (shell, file editing, embedded Postgres tests).

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have searched GitHub for duplicate or related PRs and linked
them above
- [x] I have either (a) linked existing issues with `Fixes: #` / `Closes
#` / `Refs #` OR (b) described the issue in-PR following the relevant
issue template
- [x] I have not referenced internal/instance-local Paperclip issues or
links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip`
URLs)
- [x] My branch name describes the change (e.g. `docs/...`, `fix/...`)
and contains no internal Paperclip ticket id or instance-derived details
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [ ] All Paperclip CI gates are green
- [ ] Greptile is 5/5 with no open P2s, recommendations, or follow-ups
- [x] I will address all Greptile and reviewer comments before
requesting merge

🤖 Generated with [Claude Code](https://claude.com/claude-code)

---------

Co-authored-by: Claude Opus 5.5 <noreply@anthropic.com>
2026-11-06 18:55:26 -06:00
DottaandClaude Opus 5.5 29e05f7e06 fix(heartbeat): sweep orphaned run scratch directories (#19671)
## Thinking Path

> - Paperclip is the open source app people use to manage AI agents for
work
> - Each heartbeat run gets a scratch directory in the system temp
folder
> - Each process attempt makes a new directory with a marker file
> - Cleanup removes only the directory of the current attempt
> - A restart kills the old attempt, so its directory stays forever
> - One restart storm left 83 directories across 78 runs
> - This pull request sweeps those directories when the run ends and at
startup recovery
> - The benefit is that temp space no longer fills with leftover
directories

## Linked Issues or Issue Description

**What happened?**

Run scratch directories made before a restart are never removed. A
restart storm left 83 `paperclip-run-*` directories across 78 runs. Each
holds only `.paperclip-run-scratch.json`.

**Steps to reproduce**

1. Start a run that makes a scratch directory.
2. Kill the server process and start it again.
3. Let the run finish.
4. List `$TMPDIR/paperclip-run-*`. The old directory is still there.

**Expected behavior**

The old directory is removed after the run ends, or at startup.

## What Changed

- Add `sweepOrphanedRunScratch` in `server/src/services/run-scratch.ts`.
- The sweep removes a directory only if it has a valid regular-file
marker and its run is terminal in this instance database. It keeps a
directory whose run it cannot see, because another instance can share
the temp root.
- The sweep keeps active runs, unmarked directories, symlinks, and
directories outside `paperclip-run-*`.
- The sweep checks each directory again before removal and bounds the
scan (500, with a rotating start so kept entries do not starve later
ones) and removals (100). A per-run sweep filters by directory name
first. Marker run ids that are not UUIDs never reach the database query.
- Call the sweep after the current attempt's cleanup in `heartbeat.ts`,
for that run only.
- Call the sweep in `reapOrphanedRuns` (startup recovery) with run
status from the database.

## Verification

- `pnpm --filter @paperclipai/server exec vitest run
src/services/run-scratch.test.ts`
- New tests cover: leftover directories of a terminal run are removed,
an active run is kept, an unmarked directory is kept, a symlink is not
followed, and removals are bounded.

## Risks

- Low risk. The sweep acts only on marked directories of terminal runs.
- A directory left by a previous attempt could hold a live grandchild
process. The sweep does not check old process groups. The run is already
terminal.

## Model Used

- Claude, claude-opus-4-5 class model via Claude Code, with tool use and
code execution.

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have searched GitHub for duplicate or related PRs and linked
them above
- [x] I have either (a) linked existing issues with `Fixes: #` / `Closes
#` / `Refs #` OR (b) described the issue in-PR following the relevant
issue template
- [x] I have not referenced internal/instance-local Paperclip issues or
links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip`
URLs)
- [x] My branch name describes the change (e.g. `docs/...`, `fix/...`)
and contains no internal Paperclip ticket id or instance-derived details
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [ ] All Paperclip CI gates are green
- [ ] Greptile is 5/5 with no open P2s, recommendations, or follow-ups
- [x] I will address all Greptile and reviewer comments before
requesting merge

🤖 Generated with [Claude Code](https://claude.com/claude-code)

---------

Co-authored-by: Claude Opus 5.5 <noreply@anthropic.com>
2026-11-06 18:51:31 -06:00
Nicky LeachandClaude Opus 5.5 0b73c805e8 feat(environments): fill an unset instance default with a managed plugin environment (#19551)
## Thinking Path

> - Paperclip is the open source app people use to manage AI agents for
work
> - A managed instance gets its instance-level environments from the
`PAPERCLIP_MANAGED_CONFIG` document, which can declare plugin
environments next to the managed sandbox
> - A platform that runs managed instances wants a new instance to start
with one of those plugin environments as its default, without changing
the default of any instance that already has one
> - #19632 made boot fill the instance default only when it is unset,
local or deleted, in one locked transaction, and removed the revert, so
every existing managed instance keeps a set default
> - This pull request adds an `instanceDefault` flag to a plugin entry.
That entry fills an unset default through the same locked fill, before
the managed sandbox does
> - The fill follows the same readiness rule as an admin's default
write, so it never moves ready agents onto a plugin that has not
prepared them
> - The platform also needs a way to know whether a release understands
plugin entries, so the release now ships a small capabilities file
> - The benefit: new instances get the plugin environment as their
default, and existing instances and admin choices are never changed

## Linked Issues or Issue Description

Refs #19632 (the locked fill-if-unset rule this builds on), #19508
(plugin entries in the managed config)

**Subsystem affected**
Server environments: the managed config parser and the managed
environment bootstrap.

**Problem or motivation**
The managed config can declare plugin environments, but it can't make
one the instance default on a new instance. An external platform also
has no way to tell whether a given release supports plugin entries
before it sends one.

**Proposed solution**
- Add `instanceDefault: true` to at most one plugin entry. Right after
that entry's boot ensure succeeds, it fills the instance default through
`fillUnsetInstanceDefault`. The managed sandbox fill runs after it.
- On a new instance the plugin environment wins. On an existing instance
the default is already set, so neither fill changes it.
- The fill declines while an active agent that follows the default
hasn't been prepared by that plugin. This is the rule the
instance-settings route enforces. When the plugin fill declines, the
managed sandbox fills as usual.
- Ship `server/src/services/managed-config-capabilities.json`, which
lists `pluginEnvironments`.

**Alternatives considered**
- A recorded one-time decision with a retry worker. It needed pending
states and extra checks for many writer and trigger combinations.
Filling only an unset default, under the existing lock, needs none of
that.
- Rejecting the fill whenever agents exist. That is stricter than the
admin route and blocks harmless cases, such as agents that are paused or
already prepared.

**Roadmap alignment**
This extends existing managed-environment behaviour. It adds no UI.

## What Changed

- `server/src/services/managed-config.ts`:
- `ManagedPluginEnvironmentSpec.instanceDefault` (boolean, default
`false`).
- The parser refuses `instanceDefault` on more than one plugin entry, on
the sandbox entry (even `false`), or as a non-boolean.
- `MANAGED_CONFIG_CAPABILITIES` and
`MANAGED_CONFIG_CAPABILITIES_SCHEMA_VERSION` constants. A plugin entry
is refused unless `pluginEnvironments` is listed.
- `server/src/services/managed-config-capabilities.json`: `{
"schemaVersion": 1, "capabilities": ["pluginEnvironments"] }`. A test
pins it to the constants and to this literal contract.
- `server/src/services/managed-environments.ts`:
- New `fillPluginInstanceDefault`. It runs right after a successful boot
ensure of the flagged entry and logs a fill or a decline. Recovery after
boot never fills.
  - The managed sandbox fill now runs once, after the plugin entries.
- `server/src/services/managed-instance-default.ts`:
`fillUnsetInstanceDefault` runs `agentsNeedSetupForEnvironmentChange`
inside its locked transaction and returns `declined:
"agents_need_setup"`. A sandbox target never needs agent setup, so the
managed sandbox fill behaves as before.
- `server/src/services/plugin-environment-driver.ts`: the readiness
query is factored into `agentsNeedSetupForEnvironmentChange`.
`assertAgentsReadyForEnvironmentChange` wraps it and still throws the
same conflict.
- `doc/DEVELOPING.md`: documents `instanceDefault`, the fill order, the
readiness decline, and the capabilities file.

## Verification

- `cd server && npx vitest run
src/__tests__/managed-plugin-environments.test.ts` (embedded Postgres),
under `instanceDefault (fill only an unset default)`:
  - A new instance gets the plugin row as its default.
  - An existing sandbox default is kept, and so is an admin's choice.
- If the plugin was down at the first boot and the sandbox filled, a
later recovery and boot keep the sandbox default.
- An admin-cleared or local default is declined while a ready or
verifying agent follows the default without the plugin's setup. The
managed sandbox then fills it.
- It fills when the agents that follow the default are paused or already
prepared, or are pinned to another environment.
  - Without the flag, nothing happens.
- A new agent that follows the default gets the plugin in
`requiredPluginIds`.
- `npx vitest run src/__tests__/managed-instance-default.test.ts`
(embedded Postgres): the earlier fill, lock and overlap cases pass. A
sandbox fill also succeeds while active agents follow the default.
- `npx vitest run
src/services/managed-environments-plugin-entries.test.ts`:
  - The fill order is plugin then sandbox.
  - When the plugin is down there is no fill, and recovery never fills.
- A failed ensure gives only the sandbox fill, and a failed fill keeps
the ensure counted.
  - When the plugin fill declines, the sandbox still fills.
- `npx vitest run src/__tests__/managed-config.test.ts
src/services/managed-config-capabilities.test.ts`: parser refusals and
the capabilities contract.
- `npx vitest run src/services/managed-environments.test.ts
src/__tests__/instance-settings-routes.test.ts
src/__tests__/environment-routes.test.ts`: pass. The route still throws
the same readiness conflict.
- `pnpm --filter @paperclipai/server typecheck` passes.
- I did not run the full `pnpm test:run`, `pnpm -r typecheck` or `pnpm
build`. CI covers them.

## Risks

- An instance whose default is unset at the first boot after this
release gets the plugin environment, if its agents are ready for it.
That covers a new instance, and an instance whose admin cleared the
default or chose the local environment. This is the intended behaviour.
- The readiness check doesn't lock agent rows. If an agent becomes ready
during the boot fill, it can miss the check, which is the same race the
admin route has. Agents created after the fill are prepared for the
plugin, because setup reads the current default.
- If the plugin is down at a new instance's first boot, the instance
keeps the managed sandbox default from then on.
- No schema change.

> For core feature work, check [`ROADMAP.md`](ROADMAP.md) first and
discuss it in `#dev` before opening the PR. Feature PRs that overlap
with planned core work may need to be redirected — check the roadmap
first. See `CONTRIBUTING.md`.

## Model Used

- Claude Opus 5.5 (`claude-opus-5-5`), Anthropic, through Claude Code
with tool use (file edits, shell, test runs).

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have searched GitHub for duplicate or related PRs and linked
them above
- [x] I have either (a) linked existing issues with `Fixes: #` / `Closes
#` / `Refs #` OR (b) described the issue in-PR following the relevant
issue template
- [x] I have not referenced internal/instance-local Paperclip issues or
links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip`
URLs)
- [x] My branch name describes the change (e.g. `docs/...`, `fix/...`)
and contains no internal Paperclip ticket id or instance-derived details
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [x] All Paperclip CI gates are green
- [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups
- [x] I will address all Greptile and reviewer comments before
requesting merge

🤖 Generated with [Claude Code](https://claude.com/claude-code)

---------

Co-authored-by: Claude Opus 5.5 <noreply@anthropic.com>
2026-11-06 16:48:13 -08:00
DottaandPaperclip 7ac99718a4 fix(workspaces): fence legacy sources for online migration (#19642)
## Thinking Path

> - Paperclip coordinates AI agents and preserves their saved work.
> - Remote workspace storage replaces legacy host directories with
durable snapshots.
> - Several legacy workspace records can name one physical project
directory.
> - A task lock alone cannot exclude a new task that selects that
directory.
> - Terminal recovery records can retain valid sources after physical
writers settle.
> - This change fences the source through its real preparation and
lifecycle owners.
> - Idle ordinary sources can then migrate while unrelated remote work
continues.

## Linked Issues or Issue Description

**What happened?**

Online migration rejects ordinary legacy directories when several
workspace records name the same path. A source inspection found 45
aliases across three project roots with no root Git marker or previously
imported nested child. The instance also had unrelated running remote
work. Requiring the whole instance to drain prevented useful migration
of these idle sources.

Terminal native sources and superseded finalization attempts also remain
blocked after their exact physical and durable owners settle. Their
files, provider allocations and recovery records must remain available
through the change of file authority.

**Expected behavior**

Migrate an idle ordinary source under a derived physical source fence.
Let unrelated object-backed turns continue. Preserve provider and
recovery obligations. Keep unknown writers, shared Git stores and
uncertain source state blocked.

**Steps to reproduce**

1. Create several local workspace records for one managed project
directory.
2. Give the aliases different source tasks. Leave their local writers
idle.
3. Keep a valid remote workspace turn running on another source.
4. Inspect or apply migration to an alias. The old owner returns
`overlapping_workspace_requires_maintenance`.
5. Retain a terminal native prepared source with a null coordinator
owner, or an old finalize attempt with an exact later committed receipt.
The old online path keeps these sources blocked.

**Paperclip version or commit**

Current tested head: `7478c817f09f7eed396922c0f7831af07ae6ff14`, based
on master `8621bcf53ee2e4bbefb7d193add42dd544ca06e8`. Related recovery
work: #19131.

**Deployment mode**

Hosted native Runner with remote workspace storage. Qualification uses
disposable local PostgreSQL databases, actual archive/storage owners and
synthetic source trees. The source observations were read-only.

## What Changed

- Retain the existing company/task source keys and add one physical
managed-project key. Heartbeat source selection, materialization, reopen
and lifecycle owners share it. Configured aliases of canonical task
directories retain their original task key.
- Fence runtime provision and each configured service CWD through both
startup owners. Check all unsettled service CWDs for physical source
overlap, even when workspace IDs differ. Runs with no services keep
their filesystem-free path.
- Derive a bounded ordinary alias closure. Lock every alias task and
lifecycle key. Reject foreign companies, changed membership, unproven
descendants, included Git metadata and other unresolved writer
obligations.
- Commit remote authority on the connection that holds source exclusion.
Refresh a stale selected local workspace after admission if migration
published remote authority. Publish activity after commit.
- Admit exact terminal native recovery sources under the existing
physical finalizer keys. Bind descriptors, allocations and owner
checkpoints to journaled fingerprints. Recheck them before capture and
publication.
- Add a separate company-scoped online entry for exact superseded
finalization receipts. Keep the offline entry's deployment prerequisites
and keep inventory read-only.
- Document the proof and the remaining Git/common-store extension. The
original files stay in place. No new scheduler, deployment action or
database migration is added.

## Verification

- Review found that the real reopen path could hold lifecycle exclusion
while waiting for a project source. The new actual nested-reopen
regression failed before the repair: lifecycle lock count was 1 while
another connection held the project fence. The repair acquires declared
and physical project sources before reconstruction and lifecycle. The
contention case, ordinary-fetch restore and runtime nested restore
passed. The lifecycle-worker restore first completed in 16.64 seconds
but exceeded its unchanged 15-second body limit; a bounded warm rerun
passed at that same limit. Both wrappers exited and completed cleanup.
The source type graph, module-boundary check and diff check pass. Final
7478 CI passed: 58 successful jobs, three skipped, one neutral and a
successful Snyk context. Fresh Greptile is 5/5 for exact7478, with no
unresolved threads. [Final
CI](https://github.com/paperclipai/paperclip/actions/runs/42318150314/job/128240631573).

- Full CI on `e4283b3452` passed the other server, build and type
checks. One exposure owner case failed: two execution workspaces
received one preview pair after source admission serialized their
starts. The first local seven-case run reproduced that failure; adding
the owner argument alone did not change the hash payload. The completed
repair binds run-scoped reuse to its execution-workspace owner. All
seven existing real-process/fake-broker cases then passed in 13.81
seconds, with wrapper exit 0 and cleanup complete. Public scope IDs and
explicit project/agent sharing are unchanged. The final7478 head passed
all required CI and fresh review gates.

- The service/source/restore owner canary passed 25 cases across four
suites before the final no-service fast-path guard (41.33 seconds). This
includes actual project service processes with a different project ID
and no execution-workspace ID. Their startup waits for source ownership,
migration stays blocked while they run, and the source becomes eligible
after their verified stop. The final three-case runtime canary passed at
the final source inputs (18.70 seconds). It covers that fast path and
both service-CWD variants. Both wrappers exited 0 and completed cleanup.
- The boundary-repair canary passed 9 cases across four suites at
`7c18f1c170`. It covers the real rehome/conversion gateway, project
command provisioning, future task selection, stale imported authority,
foreign-company binding, and existing standalone filesystem callers. The
shared PostgreSQL wrapper exited 0 and completed cleanup. Duration:
94.15 seconds.
- The P1 diagnostic passed 46 cases across five suites at the pre-rebase
P1 revision. It covers the actual importer with an export warning
created by `recordNativeFinalizationFailure`, strict
prepared-source/action bindings, finalizer locks, source/lifecycle
races, unrelated remote execution, and bare Git with external
alternates. It uses the repository shared PostgreSQL wrapper,
`--fsModuleCache`, and a local-only 90-second hook allowance. Duration:
245.44 seconds. No product timeout changed.
- The canonical retained-directory compatibility check passed 22 cases
across two suites. Missing archived task directories still import from
authenticated restore points; they do not need a present-directory
source proof.
- Both initial P1 regressions were observed before the fix. The real
finalizer warning made the importer ineligible. The old archive owner
accepted a nested bare repository borrowing external objects. The new
cases pass and preserve the original warning, prepared descriptor,
allocations and files.
- Prior attempts remain non-passes: the first 23-case canary passed on
an earlier head; its exact-head rerun hit 30-second database
setup/cleanup limits. A read of the owned PostgreSQL server found a
template clone waiting on `DataFileExtend` for 58 seconds. A broader
owner run was intentionally interrupted during slow existing heartbeat
setup. One diagnostic invocation used an invalid CLI option and executed
no tests. A later review canary passed 21 cases and failed the new real
restore contention case: cwd-only admission missed the declared project
of an external worktree. Its fixture also omitted the required
file-repository authorization callback and produced an unhandled
rejection after the failed assertion. The repaired run passed 22 cases,
exited 0 and completed cleanup. These earlier failures are not reported
as passes.
- The recovery owner passed 37 PostgreSQL cases, including 14 new and 23
existing finalized-recovery cases. The operation reconciliation owner
passed 40 cases. The initial archive run passed 103 cases and found a
missing closed diagnostic entry; the corrected diagnostic and expanded
Git rejection cases pass in the P1 run.
- The full server type graph passes with the Runner source exports
mapped locally because this checkout has no built Runner declarations.
The latest module-boundary check and `git diff --check` pass. Standard
package build/typecheck and broad final-head regression coverage remain
required in CI.
- The initial CI exposed missing admission scopes for standalone
filesystem APIs and a changed foreign-company error. The latest repair
keeps those APIs independent of a database and holds physical fences at
their actual database-backed mutation owners. The branch also includes
the existing master fix for unchanged Runner default-model assertions.
New review findings and new-head CI are being checked.
- The local canary command and bounded source selection are documented
in `doc/plans/2026-11-06-online-ordinary-source-fence.md`. Source
observations only read data. A fresh bounded metadata probe found 254
pending legacy records and zero unsettled local-process services. No
live import, hold, cancellation, provider action or source filesystem
write was performed for this change.

## Risks

- Run-scoped reuse now includes execution-workspace ownership in its
private key. Explicit project/agent sharing keeps its previous identity.
- A missing writer owner could make a source proof unsafe. Admission
derives physical aliases, includes future project selection and retains
all existing source/lifecycle/finalizer locks. Unknown and changed state
fail closed.
- Cross-company physical alias checks use bounded minimal-path pages.
Lexical-prefix filtering cannot safely replace them because a symlink
can hide a foreign alias. Unknown paths or more than 10,240 foreign
records leave the source explicitly unproven. More than 1,000
same-company local records also fail closed.
- The project key can serialize local preparation within one project. A
first project waits; additional project acquisition fails on contention
to avoid a lock cycle. Remote authority keeps its remote preparation
path.
- Recovery preservation does not prove provider termination or
successful file recovery. Existing provider allocations, checkpoints,
task intent and recovery actions remain authoritative.
- This slice does not finish shared Git migration. Git
administrative/common-object/alternates closure and exact nested
imported-child coverage remain the next owned extension. No global
writers-stopped shortcut is used online.

## Model Used

OpenAI GPT-6 through Codex, with reasoning, tool use and code execution.
The host does not expose a more specific backend model ID or
context-window size.

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have searched GitHub for duplicate or related PRs and linked
them above
- [x] I have either (a) linked existing issues with `Fixes: #` / `Closes
#` / `Refs #` OR (b) described the issue in-PR following the relevant
issue template
- [x] I have not referenced internal/instance-local Paperclip issues or
links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip`
URLs)
- [x] My branch name describes the change (e.g. `docs/...`, `fix/...`)
and contains no internal Paperclip ticket id or instance-derived details
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [x] All Paperclip CI gates are green
- [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups
- [x] I will address all Greptile and reviewer comments before
requesting merge

---------

Co-authored-by: Paperclip <noreply@paperclip.ing>
2026-11-06 18:42:45 -06:00
Devin FoleyandPaperclip 2a4a001d37 Preserve GitHub access repair guidance for MCP callers (#19655)
Return GitHub permission denials as failed MCP tool results with trusted,
connection-specific recovery guidance. Explain the personal-account and
organization App installation boundary without replaying writes or bypassing
provider-content checks. Align the repair steps with the Permissions UI.

Cover enabled model checks and malicious provider failures across direct
calls, connection tests and stored approvals. Repair the CI-exposed synthetic
onboarding environment fixture without weakening cancellation assertions.

Verified 311 targeted tests, six onboarding Playwright tests, server
typecheck, module boundaries, full CI and Apex 5/5 with all threads resolved.

Co-Authored-By: Paperclip <noreply@paperclip.ing>
2026-11-06 16:32:27 -08:00
DottaandPaperclip a3eecf1fc9 Preserve admitted runtime skill bundles during server replacement (#19675)
## Thinking Path

> - Paperclip is the open source app people use to manage AI agents for
work.
> - Native runs keep the exact skill files admitted for execution and
recovery.
> - Older inputs can name immutable local bundles without a skill
version ID.
> - Installed skill heads alone do not preserve those admitted bundles.
> - Server replacement needs a durable source for each retained bundle.
> - This pull request copies authenticated bundles through the existing
package owner and restores their exact projections.
> - The benefit is preservation during online migration without stopping
active work or settling recovery warnings.

## Linked Issues or Issue Description

Refs #19656. Related: #19660.

**What happened?**

Older native execution inputs can contain skill bundles with a null
version ID. Recovery skips those bundles. Startup installation checks
can pass even when those retained inputs still require the old
filesystem.

**Expected behavior**

Preserve each retained admitted bundle in object storage. Restore its
original bytes, modes and digests on an empty replacement host. Keep its
null pin and all run, controller and recovery state. Block startup and
enrollment while a concrete local asset obligation remains.

**Steps to reproduce**

Retain a native run with an admitted local skill bundle and a null
version ID. Convert its installed skill head to durable storage. Replace
the server home and attempt recovery. The old bundle path remains in the
recovered context.

## What Changed

- Add a bounded `runtime-assets` phase to the existing skill package
maintenance CLI. It copies exact admitted files under the runtime asset
publication lock, verifies the durable package, and appends a run-bound
receipt after source revalidation.
- Keep original files, null pins, task intent, warnings and controller
leases. Support an active run through copy-only preservation. Do not
start a turn or claim provider ownership.
- Verify and reuse a healthy canonical local bundle before storage
reads. Restore missing or damaged bundles through the existing package
and native asset materializers. Use the authenticated original manifest
to preserve exact read and execute modes. Accept a later contract
revision only when the run binding and exact skill selection remain
unchanged.
- Check retained recovery obligations and current task sessions during
both startup and migration eligibility. Ignore ordinary admission that
has no completed execution input.
- Protect receipt-backed packages from orphan collection. Serialize
receipt publication and deletion on the package row, then check
references in a fresh statement after the lock.
- Add real PostgreSQL and filesystem regressions. Replace a
delete-method proxy with an actual upload-renewal row-lock race. Publish
mutation activity only after commit.

## Verification

- Baseline production startup gate failed the new concrete-asset
regression as expected. The fixed gate passed. The actual before-fix
preservation owner also failed recovery from a healthy local bundle
during a simulated storage outage. A verified local-first path fixes
that regression.
- Eight preservation tests passed with real PostgreSQL, streaming
storage, archive extraction and native materialization. They cover cold
recovery, exact modes and binary bytes, active ownership, changed
sources and bindings, contract revisions, missing or corrupt receipts,
and publication/collection races.
- Six affected package collection/deletion controls and three existing
startup controls passed. The existing versioned recovery consumer passed
a sequential retry.
- One fixture attempt failed on its cleanup foreign-key order; the
fixture was corrected. One existing suite hit its unchanged 30-second
database startup hook before test execution. The unchanged single
consumer passed on retry. These failures remain recorded.
- Source, changed-test and CLI TypeScript checks passed. Rebase
preserved both the local instruction-copy and runtime-asset guards.
Current-head changed-test checks passed. Final PostgreSQL rerun passed
all eleven preservation/startup cases. Current CLI check passed.
Required CI remains pending at the trusted-runner gate.
- Current canonical bundled creation uses package preparation plus
atomic content/head publication. Native preparation requests immutable
version snapshots before delivery. Converted installations and new
canonical bundled creation therefore do not recreate the historical
null-version asset dependency.
- Fresh Greptile review on exact head
`54c7dd048c9016c1af9fc68213d5ae053ac16499` passed at 5/5 with zero
unresolved threads.
- Module boundaries, whitespace, and credential/internal-reference scans
passed. No live source writes, provider actions or migration apply were
performed.

## Risks

Missing, changed or unsafe local files remain blockers. This command
does not repair a previously published package whose objects later
disappear or become corrupt. It also refuses malformed preservation
receipts. It retains the original local files and prior evidence and
keeps removal blocked. Automatic repair requires a separate canonical
package-owner recovery operation; direct database edits are not an
accepted recovery path. Failed publication keeps the original files and
any unreferenced package for normal collection. The readiness check is
explicit startup or enrollment work, not a background scan. Its cost
grows with retained admitted asset obligations. Older readers must be
upgraded before the old volume is removed. This change preserves asset
bytes; it does not settle business recovery or qualify unrelated volume
dependencies.

## Model Used

OpenAI GPT-6 (Codex). The runtime did not expose a more specific backend
model ID or context-window size. Used reasoning, code editing, and tool
execution.

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have searched GitHub for duplicate or related PRs and linked
them above
- [x] I have either (a) linked existing issues with `Fixes: #` / `Closes
#` / `Refs #` OR (b) described the issue in-PR following the relevant
issue template
- [x] I have not referenced internal/instance-local Paperclip issues or
links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip`
URLs)
- [x] My branch name describes the change (e.g. `docs/...`, `fix/...`)
and contains no internal Paperclip ticket id or instance-derived details
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [x] All Paperclip CI gates are green
- [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups
- [x] I will address all Greptile and reviewer comments before
requesting merge

---------

Co-authored-by: Paperclip <noreply@paperclip.ing>
2026-11-06 18:23:53 -06:00
DottaandClaude Opus 5.5 6d1ecfc420 fix(accounting): close a remote run's lost receipt once its sandboxes are terminated (#19606)
## Thinking Path

> - Paperclip is the open source app people use to manage AI agents for
work
> - Budget admission waits while completed runs await accounting; #19497
made that a hold on new work, never a hard stop
> - #19497 also closes a lost usage receipt once a local provider is
verified stopped, so the hold ends
> - A remote (Daytona) run has no local stop event and keeps its
recorded remote process identity, so its lost receipt never closed. The
company then held all new work until a receipt that can no longer arrive
> - This pull request closes a remote run's lost receipt once every
sandbox it used carries a provider termination receipt
> - The benefit is that a restart that kills a Daytona turn no longer
stops a company's new work

## Linked Issues or Issue Description

Follow-up to #19497. Refs #19544 (Daytona chaos harness).

**What happened?**
In a Daytona restart wave, run `a261c30b` failed after native recovery
was blocked. Its usage receipt stayed incomplete
(`accountingReceiptReady: false`). Both of its sandbox leases were
released with a `destroyed` termination receipt, but accounting stayed
pending. Admission then refused new company work with "New work must
wait while a native run recovers its unfinished accounting".

**What did you expect?**
Once every sandbox of the run is stopped or destroyed, no runner can
report usage for it. The known part of its usage should settle as an
unpriced charge, as it does for a verified local stop, and new work
should be admitted.

**Steps to reproduce**
1. Run a native task on a Daytona environment with a hard-stop budget.
2. Kill the control plane during the provider turn so the turn's receipt
is lost and native recovery ends in terminal failure.
3. After the sandbox lease is released with a termination receipt,
observe that the run stays `cost_accounting_pending` and new work is
held.

## What Changed

- `run-cost-accounting.ts`: the closed-receipt predicate gains a remote
branch. A native run in terminal failure without a result (failed,
cancelled, timed out or interrupted) is closed when it has at least one
environment lease and every lease carries a
`paperclip.remote-termination.v1` receipt bound to that lease, run,
company, provider and provider lease ID, with state `stopped` or
`destroyed`, after a successful release. This mirrors
`hasRemoteTerminationReceipt`. One SQL predicate still serves the
reconciler scan and settlement.
- The local branch is unchanged: a failed run with a verified local stop
event and a cleared process identity.
- A sandbox that may still run (no receipt, lease still active), a
receipt bound to another sandbox, or a run with no lease keeps its debt
pending.
- `budget-enforcement-worker.ts`: the accounting worker also wakes when
environment-cleanup or retained-session-cleanup work commits. Those are
the signals the lease writers already send when they release or stop a
sandbox.
- `doc/SPEC-implementation.md`: documents the remote closure rule.

## Verification

- `closed-native-receipt-accounting.test.ts` (embedded Postgres):
- A failed and a cancelled remote run, with one destroyed and one
stopped sandbox, settle as one unpriced charge, settle the reservation,
and clear admission. These are red on master.
- Debt stays pending for an active sandbox with no receipt, for one of
two sandboxes without a receipt, for a receipt bound to another sandbox,
and for a run with no lease.
- `budget-enforcement-worker.test.ts`: the accounting worker wakes on
environment-cleanup and retained-session-cleanup commits, and stops
waking after `stop()`. These are red on master.
- Existing suites pass locally: native-stop-accounting,
budget-enforcement-scoping, heartbeat-cost-accounting,
run-cost-accounting, cost-data-quality, budgets-service. Server
typecheck passes.
- Live Daytona restart wave: results in the comments.

## Risks

- A cancelled remote run now closes once its sandboxes are terminated.
Stop recovery could otherwise reattach a recorder, but a stopped or
destroyed sandbox has no runner to reattach to. Local cancelled runs
keep their drain.
- Workspace export can restart a stopped sandbox and removes its
termination receipt first. A receipt that arrives after settlement still
posts through late-receipt reconciliation.
- Reusable-lease chains (`resolveRemoteTerminationLease`) and
recovered-cleanup stop receipts are not mirrored, so those runs stay
pending. That is the conservative side.
- Low query cost: the predicate runs only for pending terminal runs.

## Model Used

- Claude Opus 5.5 (`claude-opus-5-5`), Anthropic, via Claude Code with
tool use (shell, file editing, embedded Postgres tests, live
restart-chaos harness).

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have searched GitHub for duplicate or related PRs and linked
them above
- [x] I have either (a) linked existing issues with `Fixes: #` / `Closes
#` / `Refs #` OR (b) described the issue in-PR following the relevant
issue template
- [x] I have not referenced internal/instance-local Paperclip issues or
links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip`
URLs)
- [x] My branch name describes the change (e.g. `docs/...`, `fix/...`)
and contains no internal Paperclip ticket id or instance-derived details
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [ ] All Paperclip CI gates are green
- [ ] Greptile is 5/5 with no open P2s, recommendations, or follow-ups
- [x] I will address all Greptile and reviewer comments before
requesting merge

🤖 Generated with [Claude Code](https://claude.com/claude-code)

---------

Co-authored-by: Claude Opus 5.5 <noreply@anthropic.com>
2026-11-06 18:17:11 -06:00
DottaandPaperclip b8d94b3ad1 test(server): verify status and object deadlines across cold sleep (#19347)
## Thinking Path

> - Paperclip manages agents and their useful work.
> - Status cards and external objects can have future refresh deadlines.
> - A stopped tenant needs a durable Cloud alarm to return for those
deadlines.
> - A local quiet report alone does not prove that handoff or later
useful work.
> - Acceptance must exercise the normal producer, authorization, claims
and alarm owner.
> - This PR adds opt-in signed cold-owner acceptance and bounded
launcher controls.

## Linked Issues or Issue Description

Refs #19001 and #19191, which have merged. This PR targets master and
adds acceptance for the existing status and object owners.

**What happened?**

The existing local coverage did not join useful status generation or
built-in GitHub refresh with signed Cloud alarm persistence, physical
child retirement and cold reactivation at the original deadline.

**Expected behavior**

Keep the feature enabled. Complete useful work through its normal owner.
Persist the exact authorized alarm before stopping the child. Wake and
process the same original deadline without losing identity, claims,
retries or useful results.

**Steps to reproduce**

Use the checked-in Node24 launcher with separate owned loopback
App/Cloud test databases, a compiled Cloud checkout and the pinned
Node22 executable. Select one status or object bootstrap, cycle or
identity case. The command validates fresh evidence and database
ownership before starting its guarded worker.

**Paperclip version or commit**

Current candidate `ea911278b22c855d6722e43afc026bfc5c031405` normally
merges fetched master `07a548073ab48f13cb93b2fdc31553a5da88a070`. All
eight owned acceptance files are byte-identical to
`c08e64fa857d39bdb79352e94d156db7a4dbebf3`; all unrelated paths exactly
match master. The guard-argument repair and source-specific historical
cycle proof are preserved.

## What Changed

- Add one named opt-in case per owner/stage/diagnostic combination. Keep
the shared business body and its original deadlines, assertions and
cleanup.
- Drive actual managed App startup, authenticated producers, persisted
claims and the signed Cloud SQL alarm before physical child stop.
- Retain the generated five-secret fixture profile across cold boots.
Store it in private directories and retain only names, hashes and modes
in evidence.
- Add optional query timestamps to the existing proxy and harness.
Existing callers keep their default behavior.
- Add launcher refusal controls and assert its complete child argument
list. Both explicit guard preloads and the exact child `NODE_OPTIONS`
must match.

## Verification

- The current preflight repair has causal proof: the old controls pass
all nine cases with an invalid worker preload flag. The new assertions
reject that same command in both success controls (two failures/seven
passes). Restoring the correct command passes all nine cases. The
original refusal, freshness, symlink and byte-preservation assertions
remain unchanged. All 33 recorded Node PIDs and three groups close;
temporary copies and private directories are removed. These controls
stop at the declared spawn stub. They verify the full command contract
and do not claim to execute Vitest.
- The prior real named status bootstrap passed in 72.942 seconds: one
selected case/six explicit skips. It exercised the actual launcher and
Vitest fork, useful normal generation, current authorization, settled
claims, original 900000ms interval and signed SQL alarm
generation/operation-lock acknowledgement before physical child stop.
Recorded processes and final SQL sessions closed; both successful
databases were normally dropped.
- Earlier normal status and GitHub-object cycles qualified their real
900-second and 300-second original deadlines, cold reactivation and
useful second results. Their complete original failure and recovery
records remain source-specific; no shortened business clock or
manufactured completion is used.
- On current integrated head `ea911278`, own frozen offline setup and
normal shared/SDK, Runner and App declaration prerequisites passed. The
status test and its imported closure pass the affected normal test-tree
compiler program with original options/references. The actual named
normal status bootstrap then passed: one selected case/six skips, 82.202
seconds in Vitest and 85.616 seconds in the launcher. It used the real
checked-in launcher, normal App/SDK/process agent and exact compiled
Cloud `389878364b42dd129835d263f91882c5774d5123`. The original 900000ms
interval and 120000ms alarm lead remain unchanged; useful v1 and signed
SQL alarm generation/operation-lock acknowledgement precede physical App
stop. All six recorded process IDs and the runtime group were absent;
independent final test-database sessions were zero, with no observer
during execution. Both fresh success databases were normally dropped.
This refreshes the changed consumer seams through handoff and stop; it
is not another cold-wake/useful-v2/full-cycle result. Historical cycles
remain tied to their measured source.
- Fresh exact-head CI and complete edited bot reviews are required
before merge. A whole final-tree local build/test or deployed suspension
is not claimed. Local provider, process and S3 boundaries are controlled
fixtures; no live GitHub provider or Railway/Neon suspension claim
follows.

## Risks

- These tests use real SQL and wall clocks and are opt-in. Their
fixtures must stay isolated and retain failed evidence.
- Stable fixture secrets must remain private and must not appear in
logs. Cleanup keeps them when owner closure is uncertain.
- The acceptance body stays shared to preserve measured evidence. The
named registration and command controls make selection failures visible.
- This PR does not change production, schema or feature enablement.

## Model Used

OpenAI `gpt-6.1-sol` produced the delegated acceptance work. OpenAI
Codex, based on GPT-6, performed managing review, source integration and
the preflight argument repair. Both used repository tools and code
execution. The coordinator's exact backend snapshot and context-window
size were not exposed.

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used
- [x] I have checked ROADMAP.md and confirmed this does not duplicate
planned core work
- [x] I have searched related PRs and linked the existing foundations
- [x] I have described the issue with the bug-template fields
- [x] I have not referenced internal or instance-local issues or links
- [x] My branch name describes the change
- [x] I have run the stated focused local tests and preserved their
limits
- [x] I have added or updated tests
- [x] I have documented the opt-in command and evidence requirements
- [x] I have documented risks
- [ ] All current-head CI gates are green
- [ ] Current-head Greptile is 5/5 with no open findings
- [x] I will address reviewer findings before merge

---------

Co-authored-by: Paperclip <noreply@paperclip.ing>
2026-11-06 18:15:56 -06:00
DottaandClaude Opus 5.5 7c673e695f fix(chat): name tasks by identifier, not UUID, in tool rows and agent text (#19635)
## Thinking Path

> - Paperclip is the open source app people use to manage AI agents for
work
> - New users meet Paperclip through the onboarding chat with their
first agent, and through task briefs that agents write
> - A browser walk of onboarding found internal handles and
control-plane jargon in those user-facing surfaces
> - A tool row showed `Read taskId: e3ecf9bc-…`, an agent-written brief
cited `task … (id 2b330993-…)`, and a Codex agent told a new user about
"receipts", "execution policy", and a "rejected policy patch"
> - Raw UUIDs and mechanism narration make the product look broken and
give the user nothing to act on
> - This pull request makes tool rows name a task by its identifier, and
tells agents to reference identifiers and to describe outcomes, not
mechanics
> - The benefit is that a new user sees "Read <task identifier>" and
plain progress updates

## Linked Issues or Issue Description

**What happened?**
In the task chat, a collapsed tool row rendered the raw call argument
`taskId: <uuid>`. An agent-written task description included a raw task
UUID next to the task identifier. A Codex chief of staff narrated
internal mechanics (receipts, execution policies, a rejected policy
patch) to a new user in chat.

**Expected behavior**
Tool rows name the task by its identifier. Agent-written text links
tasks and documents by identifier. Agents tell the user what happened,
what it means, and the next step.

**Steps to reproduce**
1. Run onboarding with the Codex API runner and accept a single-task
proposal.
2. Watch the handoff in the chief-of-staff chat.
3. See the task lookup tool row and the narration. With the Claude API
runner and the plan path, open a child task created from the plan and
read its description.

## What Changed

- `ui/src/components/task-chat/transcript-adapter.ts`: a tool row's
target never contains a UUID argument. A `taskId`/`issueId` UUID is kept
as `taskRefId` on the tool item.
- New `ui/src/components/task-chat/task-reference.ts`:
`useTaskReferenceLabel` reads the task from the shared issue detail
query cache and returns its identifier. It returns "task" until the task
resolves or when it cannot.
- `TaskChatRunnerActivityGroup` and `TaskChatToolCard` show that
identifier as the row subject. They load the task only for rows that
have a task reference.
- `skills/paperclip/SKILL.md` (Comment Style): two new required rules.
"No raw IDs in prose" and "Describe outcomes, not mechanics".
- First-task onboarding skill: a "Talk in outcomes" rule. Non-inline
handoff inputs use an identifier link, not a raw UUID.
- Chief-of-staff persona (`AGENTS.md` for the first agent): the same
plain-language rule, so it applies in every chat.
- `skills/paperclip-converting-plans-to-tasks/SKILL.md`: task
descriptions reference other tasks and documents by identifier link,
never by raw UUID.
- No change to `skills-releases/` snapshots. They are frozen releases.

## Verification

Red on master (fix files reverted, new tests kept):

```
ui  tool-row-task-reference.test.tsx
 FAIL  ... > falls back to a plain word while the task cannot be resolved
AssertionError: expected 'ReadtaskId: e3ecf9bc-099a-4b10-8169-9…' not to contain 'e3ecf9bc-099a-4b10-8169-9ce490a91e3d'
      Tests  3 failed (3)
server  user-facing-wording-guidance.test.ts
      Tests  6 failed (6)
```

Green with the fix:

```
ui  tool-row-task-reference.test.tsx        Tests  3 passed (3)
server  user-facing-wording-guidance.test.ts Tests  6 passed (6)
```

Neighbouring suites:

- `cd ui && npx vitest run src/components/task-chat
src/components/TaskChatThread src/components/transcript`: 70 files, 1448
passed, 1 skipped.
- From the repo root: `onboarding-first-task-assets`,
`paperclip-skill-utils`, `onboarding-first-task-admission`,
`hiring-operational-examples`, `cli-invocation-safety`, and the new
guidance test all pass.
- `pnpm check:token-gates`: all gates clean. The change adds no styles.
- `ui` typecheck: no errors in the changed files.
- Not run locally: `agent-skills-routes.test.ts` hit a 30 s `beforeAll`
import timeout on a cold cache. CI covers it.

## Risks

- Low risk. A row that names a task loads that task once through the
shared issue detail cache. The thread usually has it cached already. A
failed load shows "task" and does not retry.
- Rows now show other non-UUID arguments after the identifier (for
example `<identifier> · status: done`). Rows without a task reference do
not change.
- The skill text changes the guidance that agents read. They do not
change permissions, tools, or API behavior.

> For core feature work, check [`ROADMAP.md`](ROADMAP.md) first and
discuss it in `#dev` before opening the PR. Feature PRs that overlap
with planned core work may need to be redirected — check the roadmap
first. See `CONTRIBUTING.md`.

## Model Used

- Claude Opus 5.5 (`claude-opus-5-5`), Anthropic, run in Claude Code
with tool use (shell, file edits, test execution).

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have searched GitHub for duplicate or related PRs and linked
them above
- [x] I have either (a) linked existing issues with `Fixes: #` / `Closes
#` / `Refs #` OR (b) described the issue in-PR following the relevant
issue template
- [x] I have not referenced internal/instance-local Paperclip issues or
links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip`
URLs)
- [x] My branch name describes the change (e.g. `docs/...`, `fix/...`)
and contains no internal Paperclip ticket id or instance-derived details
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [x] All Paperclip CI gates are green
- [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups
- [x] I will address all Greptile and reviewer comments before
requesting merge

🤖 Generated with [Claude Code](https://claude.com/claude-code)

---------

Co-authored-by: Claude Opus 5.5 <noreply@anthropic.com>
2026-11-06 18:12:48 -06:00
DottaandClaude Opus 5.5 6c7cc2c5d6 fix(native): do not spend a recovery attempt resuming a cleanly drained run (#19625)
## Thinking Path

> - Paperclip is the open source app people use to manage AI agents for
work
> - Native runs have an execution recovery budget of three provider
attempts, so a run that keeps failing stops retrying
> - A graceful shutdown (deploy or SIGTERM) drains native runs: it
suspends them for reattachment by the next server
> - When the runner did not survive, the next boot resumed the turn and
charged one attempt
> - Restarts that the run did not cause used up its budget, so recovery
stopped and the task needed a manual Retry
> - This pull request does not charge an attempt for resuming a run that
a graceful drain suspended
> - The benefit is that deploys and graceful restarts no longer exhaust
a healthy run's recovery budget

## Linked Issues or Issue Description

**What happened?**
In restart-chaos testing, native runs reached
`execution_recovery_budget_exhausted` (3/3) only because of server
restarts. In one wave, two restarts crossed each of two runs. In a
second schedule (K1, then K2 when ready, then K2 again), each drain
correctly suspended the local ACPX Claude run, yet the fourth boot
blocked it with `native_restart_recovery_blocked`. Every resume after a
drain was classified `resume_dead_runner` and charged an attempt
(`nextNativeProviderAttempt` in `native-restart-recovery.ts`, applied by
the executor's execution claim).

**Expected behavior**
A restart that the run did not cause should not consume its recovery
budget. A graceful drain records `restart_suspended` and
`awaiting_runner_reattach`. The resume that follows should keep the
attempt count.

**Paperclip version or commit**
`master` at `4ef3fa4271`.

**Steps to reproduce**
Start a native local run. Send the server SIGTERM three times while the
run is active, with a full restart each time. The third resume is
blocked with `execution_recovery_budget_exhausted`.

## What Changed

- `suspendedByCleanDrain()` in `native-restart-recovery.ts` recognizes a
run whose most recent recovery claim is older than the drain's
`restart_suspended` entry. Ownership waits and deferred blocks between
the drain and the next claim do not erase it. The next claim consumes
it.
- A scan that waits for the old controller to exit (`awaiting_evidence`)
records one history entry per reason, so repeated scans cannot push the
drain record out of the bounded history.
- Restart claims carry `chargesProviderAttempt`. It is `false` for a
claim that follows a clean drain.
- `nextNativeProviderAttempt()` takes that flag. The executor passes it
when it takes the execution lease, so a drained resume keeps the current
attempt.
- The first execution is always counted: a run drained at attempt 0 (no
execution claimed it yet) still charges its first provider start.
- A run drained during its third attempt may continue that attempt. The
local resume and remote bootstrap gates skip the `>= 3` exhausted check
only for a non-charging resume, and the executor still refuses a fourth
attempt.
- A crash restart (no drain record) still charges one attempt.
Reattachment to a live runner still charges none.
- `doc/execution-semantics.md` states the rule next to the three-attempt
budget.

## Verification

- New test in
`server/src/__tests__/heartbeat-native-restart-suspension.test.ts`
(embedded Postgres, real heartbeat drain and restart recovery):
- Red before the fix: the claim after the drain had no
`chargesProviderAttempt: false`.
- Green after the fix, for drained attempts 0, 1 and 3: the crash claim
charges (`true`). After the drain, a controlled backend lets the
executor take its execution lease and records the saved
`native_run_finalizations.attempt` at provider dispatch: 1, 1 and 3.
Attempt 3 is claimed instead of blocked.
- Red at the executor: when the executor ignores the flag, the drained
attempt-1 resume saves 2.
- Ownership-wait case: the drained controller (the test process) is
still alive, so two scans wait. The history keeps `restart_suspended`
followed by one `awaiting_evidence` entry. After the controller is gone,
the claim does not charge, and attempt 3 continues.
- Classifier cases (local resume and remote bootstrap): attempt 3 after
a crash is still `execution_recovery_budget_exhausted`. Both new cases
were red on the previous revision.
- `heartbeat-native-restart-suspension.test.ts` 12/12,
`native-runner-restart-recovery.integration.test.ts` and
`native-runner-ownership.test.ts` 94 passed.
- `tsc --noEmit` for `server` passes.

## Risks

- A run that itself makes the server shut down gracefully, again and
again, would no longer be stopped by this budget. Graceful shutdowns are
operator or deploy actions, so this is unlikely. A crash loop (SIGKILL,
OOM) still charges an attempt on every restart, and a resumed turn that
fails still goes through the existing failure and replacement budget.
- This changes only the attempt count. Ownership checks, checkpoint
verification and the exhausted gate are unchanged.

> For core feature work, check [`ROADMAP.md`](ROADMAP.md) first and
discuss it in `#dev` before opening the PR. Feature PRs that overlap
with planned core work may need to be redirected — check the roadmap
first. See `CONTRIBUTING.md`.

## Model Used

- Claude Opus 5.5 (`claude-opus-5-5`), Anthropic, via Claude Code with
tool use (shell, file edits, test execution). Extended reasoning
enabled.

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have searched GitHub for duplicate or related PRs and linked
them above
- [x] I have either (a) linked existing issues with `Fixes: #` / `Closes
#` / `Refs #` OR (b) described the issue in-PR following the relevant
issue template
- [x] I have not referenced internal/instance-local Paperclip issues or
links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip`
URLs)
- [x] My branch name describes the change (e.g. `docs/...`, `fix/...`)
and contains no internal Paperclip ticket id or instance-derived details
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [x] All Paperclip CI gates are green
- [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups
- [x] I will address all Greptile and reviewer comments before
requesting merge

🤖 Generated with [Claude Code](https://claude.com/claude-code)

---------

Co-authored-by: Claude Opus 5.5 <noreply@anthropic.com>
2026-11-06 18:12:12 -06:00
Nicky LeachandClaude Opus 5.5 55244f1e9c test(server): remove two timing flakes in cloud adapter and native cleanup tests (#19668)
## Thinking Path

> - Paperclip is the open source app people use to manage AI agents for
work
> - Contributors wait for PR CI before merge, and a flaky test forces a
re-run of the whole CI run
> - Four server tests failed on 2026-11-06 on commits that passed on a
later attempt
> - Two of them failed because of real slowness inside a fixed time
limit on contended 4-vCPU runners
> - This pull request removes that slowness from the two tests. It does
not raise their time limits
> - Of the other two tests, one is already fixed on master, and one is
not reproduced (see below)
> - The benefit is fewer whole-run re-runs

## Linked Issues or Issue Description

**What happened?**

These tests failed in PR CI and passed on a re-run of the same commit:

- `server/src/adapters/cloud-external-adapters.test.ts` › "Cloud image
adapter boundary › cold boots built-ins…" failed with `Test timed out in
15000ms` (3 times).
- `server/src/__tests__/retained-native-session-cleanup-work.test.ts` ›
"drains a backlog across discovery pages…" failed with `Test timed out
in 15000ms` (2 times).

**Expected behavior**

Both tests pass on a loaded CI runner.

**Steps to reproduce**

1. Run the test file in a 4-CPU container (`docker run --cpus=4
--memory=16g`) with 4 copies at the same time.
2. Before this change, the adapter case fails in 4 of 4 runs at 15,008
to 15,041 ms.

## What Changed

- `cloud-external-adapters.test.ts`: add a `beforeAll` warm-up with a
90-second limit.
- The warm-up imports `registry.js`, `plugin-loader.js` and
`adapter-plugin-store.js` with an empty temporary home and the managed
signal, so it reads and runs no persisted adapter package.
- Before this change, the first case paid the one-time transform of the
whole built-in adapter graph inside its own 15-second budget. In CI the
first case timed out at 15 seconds, and the next case took 1.1 seconds.
- Each case still gets fresh module state from the existing
`vi.resetModules()`. No assertions change.
- `retained-native-session-cleanup-work.test.ts`:
- `flush()` takes an optional poll `interval`, which defaults to 50 ms,
so other tests do not change.
- The backlog test uses 5 ms. The worker admits one cleanup pass per
1-second fake-time step, so 103 entries need 103 polls in a row.
- The next wake is scheduled before a pass releases its idle-work hold,
so a faster poll cannot see a false quiet state. No assertions change.

## Verification

| Test | Before | After |
| --- | --- | --- |
| Adapter cold boot, container, 4 copies | failed 4/4 (15,008–15,041 ms)
| passed 4/4 (537–756 ms per case; the warm-up takes about 23 s) |
| Adapter cold boot, host | failed 2/2 | passed 3/3 (0.6–1.6 s) |
| Backlog drain, container, 4 copies with load | 6.3–6.6 s | 2.0–2.1 s |
| Backlog drain, host, unloaded | 5.1 s | 1.1–1.3 s (5 runs, 29/29 pass)
|

- Final host run of both files with `--maxWorkers=2`: 33/33 pass.
- The backlog test did not reach the 15-second timeout in local runs.
The evidence for that fix is the measured poll-bound cost.

**Not changed in this PR:**

- `connection-management.integration.test.ts` (expected 3 to be 2):
- Cause: a GitHub webhook recovery worker from an earlier test fetched
through the suite-wide fetch spy 60 seconds later.
- Master already fixes this with commit 0b48bc7ac5 (#19541). The failed
jobs ran on bases without that commit.
- `idle-completed-history.test.ts` (runtime service never ready):
- Not reproduced in a 4-CPU container, even with heavy load. CPU load
alone does not explain a child process that stays silent for 10 seconds.
  - A next step is to record spawn-to-listen timing in CI.

## Risks

- The adapter warm-up adds about 1 to 25 seconds to the file's
`beforeAll`, depending on load, but the test body becomes faster by the
same amount.
- If the adapter graph import becomes much slower, the 90-second warm-up
limit shows that as a clear hook timeout.
- Typecheck did not run locally. CI checks it. The edits are a
`beforeAll` import and a numeric default parameter.

## Model Used

- Claude Opus 5.5 (`claude-opus-5-5`) in Claude Code, with tool use and
code execution. A Claude sub-agent found the causes and made the fix,
and the parent session reviewed it.

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have searched GitHub for duplicate or related PRs and linked
them above
- [x] I have either (a) linked existing issues with `Fixes: #` / `Closes
#` / `Refs #` OR (b) described the issue in-PR following the relevant
issue template
- [x] I have not referenced internal/instance-local Paperclip issues or
links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip`
URLs)
- [x] My branch name describes the change (e.g. `docs/...`, `fix/...`)
and contains no internal Paperclip ticket id or instance-derived details
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [x] All Paperclip CI gates are green
- [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups
- [x] I will address all Greptile and reviewer comments before
requesting merge

🤖 Generated with [Claude Code](https://claude.com/claude-code)

Co-authored-by: Claude Opus 5.5 <noreply@anthropic.com>
2026-11-06 16:02:56 -08:00
DottaandPaperclip 6be71028ad Prepare online ephemeral enrollment through signed Cloud control (#19660)
## Thinking Path

> - Paperclip manages agent work through a control-plane web server.
> - A replacement web server needs shared durable data and the original
signing identity.
> - Existing enrollment exports that identity only after a global drain
and offline migration.
> - Online enrollment needs a separate preparation operation while agent
work continues.
> - This change adds a purpose-bound Cloud control operation with
existing data and key owners.
> - The result is an audited preparation receipt, with no permission to
stop agents or detach storage.

## Linked Issues or Issue Description

Refs #19038. Refs #19024.

**What are you trying to improve?**
Allow Cloud to prepare an already migrated tenant for volume removal
without the offline migrator or a global-idle gate.

**What problem does this solve?**
Cloud must preserve the original decision key before starting a
replacement with static ephemeral mode. A tenant session must never gain
key-export authority.

**What would the improvement look like?**
A fresh exact-action Cloud assertion obtains a private, deployment-bound
preparation receipt. Unfinished durable-data migration and invalid
replacement configuration block export.

## What Changed

- Add the signed `ephemeral-enrollment:prepare` control action and a
strict UUID-only POST route.
- Check existing durable-data eligibility and ephemeral configuration
before reading the original key. Never create a missing key.
- Audit only public preparation metadata. Keep HTTP diagnostics
secret-sensitive and the response non-cacheable.
- Bind the receipt to the attempt, stack, build commit, Railway
deployment, time, static mode and key digest.
- Always return `enrollmentReady: false`. Cloud still needs to arm a
replacement, verify old writers have stopped, repeat eligibility and
qualify native handoff before detaching the retained volume.

## Verification

- PASS: 80 focused tests across the preparation owner, signed route,
existing Cloud control, HTTP privacy and OpenAPI route coverage.
- PASS: 2 real PostgreSQL cases. Concurrent copies of one signed request
export once; the durable receipt still rejects reuse after clearing the
process fence. Normal run admission before skill pins is allowed;
missing durable skill installation remains blocked.
- Genuine prepatch RED: the same two PostgreSQL cases exported twice and
rejected ordinary admission. The fixed owner was restored automatically
after the comparison.
- PASS: server TypeScript check with workspace dependencies built.
- Fixed the first CI route-coverage failure by declaring this private
control endpoint in the existing explicit OpenAPI exclusion registry.
- Initial local HTTP execution lacked sandbox socket permission; the
reviewed run passed. Initial PostgreSQL fixtures enabled durable files
too late and reused an issue prefix; those fixture defects were
corrected before the red/green comparison.
- All required CI gates pass on
5346721847. Fresh Greptile review is 5/5
and all review threads are resolved. No deployment, volume detachment,
admission change or agent stop is performed by this PR.

## Risks

- The private response contains the original signing key. Only a fresh
stack-bound assertion for this exact action can obtain it. The Cloud
consumer must pass it directly to its existing vault owner and must not
expose it through admin responses or registry metadata.
- Eligibility is an observation. It cannot replace static writer
restrictions or qualified ownership handoff. This PR deliberately
supplies no detach or readiness authorization.
- Cloud transition integration is still required. This PR alone does not
enroll an instance.

## Model Used

OpenAI Codex, GPT-6 family, with reasoning, code execution and browser
tools. The host does not expose the exact serving model ID or
context-window size.

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have searched GitHub for duplicate or related PRs and linked
them above
- [x] I have either (a) linked existing issues with `Fixes: #` / `Closes
#` / `Refs #` OR (b) described the issue in-PR following the relevant
issue template
- [x] I have not referenced internal/instance-local Paperclip issues or
links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip`
URLs)
- [x] My branch name describes the change (e.g. `docs/...`, `fix/...`)
and contains no internal Paperclip ticket id or instance-derived details
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [x] All Paperclip CI gates are green
- [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups
- [x] I will address all Greptile and reviewer comments before
requesting merge

---------

Co-authored-by: Paperclip <noreply@paperclip.ing>
2026-11-06 18:00:28 -06:00
c82211251b test(chat): cover Slack forwarding deadlines through registered owners (#19348)
## Thinking Path

> - Paperclip is the open source app people use to manage AI agents for
work.
> - People answer agent questions through Slack commands, buttons, and
forms.
> - Slack requires a response within three seconds. A modal trigger also
expires after three seconds and can be used once.
> - Durable event delivery does not prove these synchronous response
paths.
> - This pull request exercises the registered app owners and pinned SDK
with original signed requests and controlled forwarding delays.
> - The tests record deadline failures without clearing invalid forms,
extending triggers, or changing production behavior.

## Linked Issues or Issue Description

Refs #19019, which has merged. This PR now targets `master`.

Related work: #8300 handles raw-body capture and plugin event fan-out.
#19328 handles Slack connection onboarding. This PR changes neither
path. I searched related open and closed work and read those PR bodies
and changed paths.

**What happened?**
A forwarding delay can leave an authenticated Slack callback too late to
acknowledge a command, exchange a modal trigger, or return field errors.
The existing direct modal test did not cover the normal registered
ingress or these provider deadlines.

**Expected behavior**
Tests must distinguish useful app persistence from a response that Slack
can still accept. They must preserve current authorization, field
validation, original signatures, and exactly-once effects.

**Steps to reproduce**
Use an owned PostgreSQL test database and the repository launcher below.
Run warm first. The default run adds one real 3500ms delay independently
before command, form-open action, and invalid submission forwarding.

**Paperclip version or commit**
Production remains byte-identical to
`54fa701d41b4ced62f4ff338d39b946015670ae3`. This test-only candidate is
`a3cce4e9868fd3e6e25d9df7d0090899bdf6a204`. It adds a recovery-fixture
setup guard after `dac0010649c435f673172c496b3383e99780e8bf`.

**Deployment mode**
Source-checkout integration test with real PostgreSQL, registered app
owners, and the pinned Slack SDK. Provider API responses and the
heartbeat receipt helper are controlled fixtures. No Slack account,
model process, deployment, or physical tenant suspension was tested.

## What Changed

- Route original signed command, action, and modal requests through the
normal chat service and real SDK runtime.
- Check forged-signature refusal, callback evidence, current-role
refusal, invalid-field errors, one corrected answer, and duplicate
fencing.
- Intercept the pinned SDK HTTP transport. Model trigger expiry and
one-use exchange without changing request timestamps or signatures.
- Observe the real platform exception through the actual bound
`views.open` callable. Delegate once and rethrow the same error.
- Restore the network guard after every setup failure. Attempt all owned
cleanup and preserve the original error before any cleanup errors.
- Guard auxiliary database cleanup when recovery test setup fails before
it creates a client. Keep temporary-cluster cleanup reachable and
preserve the original setup error.
- Add a repository launcher with the current prewire guard, one worker,
explicit test-database validation, and closed warm-only and
action-delayed-only selectors. The default still selects all four cases.

## Verification

- Current candidate `c6ae7957988e220ea096ab678f070d3bd1c5f9c0` normally
merges fetched master `8621bcf53ee2e4bbefb7d193add42dd544ca06e8`. All
three owned protocol/recovery acceptance files are byte-identical to the
preceding head. All other paths exactly match master. The shared Runner
default test conflict uses master's independently landed constant-based
repair. That supersedes this branch's temporary two-literal repair; no
fourth file remains in the PR diff.
- Original CI server4/12 had two stale `gpt-5.6-sol` expectations after
the normal default changed to `gpt-6.1-sol`. The complete failure log is
retained. Before the master repair landed, the focused two-literal
correction passed the whole six-case file with explicit-model,
non-Codex, lifecycle, permission and skill checks intact. That local
result is source-specific; it is not a fresh full merged-tree pass.
- The original guard-leak counterfactual reproduced unrestored global
network functions after setup rejection. The repaired callback passed
four controlled cleanup diagnostics. Cleanup attempts each initialized
owner and restoration even after a failure. It preserves the primary
error first and retains separate cleanup errors.
- A fresh registered SQL/SDK warm case passed on the qualified protocol
source with one persisted answer, 17.15 seconds total and normal
original assertions. Final independent SQL and recorded PID/group audits
were empty. A diagnostic sampler initially hit EPERM, and the worker
exit guard line was absent; those limits remain explicit. The cleanup
diagnostics are local qualification tools, not four newly checked-in CI
tests.
- Delayed modes remain explicit diagnostic commands. Ordinary CI runs
warm. Earlier mode results do not establish a final-source four-case
single-command pass. The provider transport is controlled; no live Slack
display, deployed sleep or wake result is claimed.
- The original server6/12 cleanup-backlog case hit its 15-second
whole-case timeout. Its phase and cause remain unknown. The original E2E
shard received runner shutdown without an assertion verdict. Complete
original logs are retained; neither failure has been labeled a flake or
repaired by extending a deadline.
- Own offline dependency setup passed with an unchanged lockfile. An
omitted private guard dependency initially prevented test entry; that
setup failure is retained separately from product results. The immutable
helper closure corrected it. No local full-repository
typecheck/build/test pass is claimed. Fresh exact-head CI and complete
edited bot reviews are required before merge.

## Risks

This is a test-only change. It changes no production code, credential
flow, schema, API, or sleep eligibility. The existing large integration
fixture remains large; this PR does not cross a file from below 1000
lines to above it and adds no code comments.

The provider transport is synthetic. The tests demonstrate deadline
consequences and app persistence, not that Slack displayed a late
response. They do not make commands or open forms safe while the tenant
sleeps. Other Slack lanes and persistent transports remain open work. CI
may expose additional harness assumptions.

The roadmap's Apps and Connections work is unchanged. This focused
regression complements the existing integration; it adds no separate
feature or provider setup path.

## Model Used

OpenAI, configured model `gpt-6.1-sol` in Codex. The exact served
backend revision and context window are not exposed. Assistance used
reasoning, source inspection, Git, native TypeScript checks, and
controlled integration tests. A coordinating GPT-6-family agent reviewed
boundaries and evidence.

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have searched GitHub for duplicate or related PRs and linked
them above
- [x] I have either (a) linked existing issues with `Fixes: #` / `Closes
#` / `Refs #` OR (b) described the issue in-PR following the relevant
issue template
- [x] I have not referenced internal/instance-local Paperclip issues or
links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip`
URLs)
- [x] My branch name describes the change (e.g. `docs/...`, `fix/...`)
and contains no internal Paperclip ticket id or instance-derived details
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [x] All Paperclip CI gates are green
- [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups
- [x] I will address all Greptile and reviewer comments before
requesting merge

---------

Co-authored-by: Paperclip <noreply@paperclip.ing>
Co-authored-by: Codex <noreply@openai.com>
2026-11-06 17:41:04 -06:00
DottaandPaperclip bb621880e6 fix(storage): preserve agent and skill files during online conversion (#19656)
## Thinking Path

> - Paperclip is the open source app people use to manage AI agents for
work.
> - Agent files and installed skills need durable storage before a
legacy volume can be removed.
> - Their maintenance commands currently require every writer to stop.
> - Normal file edits already use agent row locks and skill publication
locks.
> - Shared agent heads also remain durable while their agents run.
> - This pull request uses those owners to copy settled files online and
keeps unresolved recovery states intact.
> - The benefit is useful migration progress while unrelated work
continues.

## Linked Issues or Issue Description

Related: #19642.

**What happened?**

Agent-file adoption and skill installation conversion reject apply
requests without a global stopped-writer acknowledgement. Agent-file
maintenance also reports an active agent as blocked when its shared head
is already durable. Live enrollment omits the existing
unresolved-local-instruction-copy guard.

**Expected behavior**

Copy settled agent files and skill installations under their existing
writer locks. Keep old skill directories, versions, and inline bytes.
Keep unresolved local copies and unknown historical pin obligations
visible to their owners.

**Steps to reproduce**

Run agent-file maintenance with `--apply` on the original host with
durable storage enabled. A managed agent without active execution is
rejected without `--writers-stopped`. The same gate rejects skill
installation conversion. An agent that already has a shared head is also
reported as blocked while it runs.

## What Changed

- Adopt settled agent files under the existing agent row lock. Recognize
an existing shared head before checking active execution, without
rewriting its projection.
- Reuse the local working-copy preservation predicate for first adoption
and live enrollment. Keep its original public export.
- Prepare skill uploads outside the shared run-pinning lock. Verify the
exact local tree and source identity under the cache, slug, and row
publication locks. Publish catalog origin history in that same
transaction.
- Retain old skill directories, versions, and inline bytes. Keep pin
retention and volume-removal guards unchanged.
- Add PostgreSQL and filesystem coverage for active durable heads,
unresolved copies, concurrent source edits, and linked files. Update the
maintenance docs.

## Verification

- Agent-file durability and live enrollment suites: 16 tests passed with
real PostgreSQL and filesystem fixtures.
- Managed skill suite: 22 tests passed. Seven final controls also
passed: upload-time file edits, source relocation, unknown historical
pins, hard-linked files, pinning during a blocked upload, and both
rejected/successful catalog-origin publication.
- Server source typecheck and focused changed-test typecheck passed.
- Module boundaries, diff whitespace, and added-line
credential/internal-reference scans passed.
- Baseline production rejected both online paths at their stopped-writer
guards. Review regressions also reproduced a busy pinning lock during
upload and extra catalog history after rejection; their fixes passed
real PostgreSQL controls. All expected red results are preserved.
- One final-control attempt failed the existing 30-second fixture
startup hook before executing tests. A sequential retry passed all four
controls without changing guards or timeouts; the failed attempt remains
recorded.
- Exact head `001a5beed9d0e55c7c178906fbad1f9a47f87788`: [required CI
passed](https://github.com/paperclipai/paperclip/actions/runs/42309446426),
including typecheck, build, tests, Runner and end-to-end gates. Greptile
completed successfully at 5/5 with zero unresolved review threads;
GitHub reports mergeable/clean.

## Risks

Changed or unsafe sources remain blocked. Storage failures keep the
original files and recovery state. This conversion does not settle
retained provider copies or historical execution. Unknown pin
obligations still block retention and volume removal; this PR alone does
not qualify removal of the original volume.

## Model Used

OpenAI GPT-6 (Codex). The runtime did not expose a more specific backend
model ID or context-window size. Used reasoning, code editing, and tool
execution.

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have searched GitHub for duplicate or related PRs and linked
them above
- [x] I have either (a) linked existing issues with `Fixes: #` / `Closes
#` / `Refs #` OR (b) described the issue in-PR following the relevant
issue template
- [x] I have not referenced internal/instance-local Paperclip issues or
links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip`
URLs)
- [x] My branch name describes the change (e.g. `docs/...`, `fix/...`)
and contains no internal Paperclip ticket id or instance-derived details
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [x] All Paperclip CI gates are green
- [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups
- [x] I will address all Greptile and reviewer comments before
requesting merge

---------

Co-authored-by: Paperclip <noreply@paperclip.ing>
2026-11-06 17:31:04 -06:00
DottaandClaude Opus 5.5 a3f80ea043 fix(onboarding): close the onboarding task when its interview moves to chat (#19643)
## Thinking Path

> - Paperclip is the open source app people use to manage AI agents for
work
> - New users start in an onboarding task. The first agent can run the
onboarding interview there or in its chat.
> - #19512 moves the interview card to the chat when the agent asks it
there. The task's card expires.
> - The onboarding task then stays `in_review` with no card, run, wake
or reviewer. Review attention calls it "stalled".
> - Needs you then shows "Choose how this task continues" with Send back
to work / Request changes / Mark task done. A new user cannot know what
to pick. The card stays after the interview, plan approval and handoff
finish in chat.
> - This pull request closes the onboarding task when its interview
moves to chat, and links the chat in a system comment.
> - The benefit is that the user never decides what happens to an
internal task.

## Linked Issues or Issue Description

Refs #19512

**What happened?**
In a browser walk (Codex API path), the user chose "Interview me" in the
onboarding task. Then the user asked in Chat: "Can we do my onboarding
interview here in chat instead of in the task?". The chat card worked.
The onboarding task stayed `in_review`, and Needs you showed "Choose how
this task continues" for it until the end of onboarding.

**What did you expect?**
The onboarding task follows the conversation. It closes with a link to
the chat. No decision about an internal task goes to the user.

**Steps to reproduce**
1. Start onboarding. Choose "Interview me" on the onboarding task.
2. Open Chat with the agent. Ask to do the interview in chat.
3. Open Inbox. See "Choose how this task continues" for the onboarding
task.

## What Changed

- `server/src/services/issue-thread-interactions.ts`: after the chat
question supersedes the onboarding task's interview cards, the
onboarding task is closed (`in_review` → `done`) when no other card is
pending on it. A system comment links to the chat. The change writes an
`issue.updated` activity entry (`source: "onboarding_moved_to_chat"`).
Activity publications and issue post-commit actions run after commit.
- The task stays open if it is not `in_review` or if another card is
still pending (for example a card for a teammate).
- `first-task` skill: tells the agent that the task closes when
onboarding moves to chat. The chat then replaces the task for the rest
of the workflow (plan, proposal cards, child tasks, results). The agent
skips the steps that keep the task `in_review` or make it wait for a
child.
- `onboarding-assets/first-task/README.md`: documents the behavior.
- Tests in `server/src/__tests__/coordinator-handoff.test.ts`: the new
red/green case, plus a case that keeps the task open when another card
is pending.

## Verification

Red on master (fix reverted, same test):

```
 FAIL  src/__tests__/coordinator-handoff.test.ts > Coordinator canonical handoffs > resolves the onboarding task when its interview moves to the agent chat
AssertionError: expected [ 'stalled' ] to deeply equal []
- []
+ [
+   "stalled",
+ ]
 ❯ src/__tests__/coordinator-handoff.test.ts:257:40
    256|     // No "Choose how this task continues" stalled-review card for the…
    257|     expect(await stalledReviewCards()).toEqual([]);
      Tests  1 failed | 3 passed | 24 skipped (28)
```

The test reads the real Needs you feed (`attentionService.list`). On
master it holds a `review` item with `reviewAttentionState: "stalled"`
for the onboarding task. That is the "Choose how this task continues"
card.

Green with the fix:

```
cd server && npx vitest run src/__tests__/coordinator-handoff.test.ts
      Tests  28 passed (28)
```

Neighbour suites:

```
npx vitest run src/__tests__/onboarding-first-task-admission.test.ts src/__tests__/issue-onboarding-first-task-routes.test.ts \
  src/__tests__/issue-thread-interaction-routes.test.ts src/__tests__/issue-thread-interactions-service.test.ts \
  src/__tests__/issue-thread-interactions-telemetry.test.ts src/__tests__/coordinator-handoff.test.ts
 Test Files  6 passed (6)
      Tests  373 passed (373)
```

- `server` typecheck (`tsc --noEmit`): pass.
- `pnpm verify` exits 2 (the README is a broad input). Required CI
supplies broad coverage.
- Not run: a live browser walk. The Vitest case drives the same service
path the chat uses.

## Risks

- Low risk. The change runs only when an agent asks a question in its
own chat and that question supersedes a pending onboarding-task question
(the #19512 path).
- The onboarding task becomes `done` without a recorded first-task
decision. Later onboarding happens in chat, so nothing waits on this
task. A done onboarding parent still accepts child-completion report
wakes.
- The onboarding task rows are locked before their question rows, the
same order question creation on the task uses (Greptile review
follow-up). The chat row is locked first; no path locks an onboarding
task and then a chat row.

## Model Used

- Claude Opus 5.5 (`claude-opus-5-5`), Anthropic, via Claude Code with
tool use (shell, file edits, test runs).

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have searched GitHub for duplicate or related PRs and linked
them above
- [x] I have either (a) linked existing issues with `Fixes: #` / `Closes
#` / `Refs #` OR (b) described the issue in-PR following the relevant
issue template
- [x] I have not referenced internal/instance-local Paperclip issues or
links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip`
URLs)
- [x] My branch name describes the change (e.g. `docs/...`, `fix/...`)
and contains no internal Paperclip ticket id or instance-derived details
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [x] All Paperclip CI gates are green
- [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups
- [x] I will address all Greptile and reviewer comments before
requesting merge

🤖 Generated with [Claude Code](https://claude.com/claude-code)

---------

Co-authored-by: Claude Opus 5.5 <noreply@anthropic.com>
2026-11-06 17:27:39 -06:00
DottaandClaude Opus 5.5 0c904e2fd5 fix(tasks): treat a queued-message Interrupt as a hand-off, not a failed attempt (#19633)
## Thinking Path

> - Paperclip is the open source app people use to manage AI agents for
work
> - A user can send a message while an agent works. The message waits in
a queue strip above the composer. The strip has an **Interrupt** button
that stops the current turn so the message starts now.
> - In a browser walk of onboarding, Interrupt showed a red "Couldn't
finish this attempt. Your message is saved." banner with Retry. The
thread also showed two rows for the same stopped run ("Stopped for 22s"
and "Stopped after 21s"). After about 20 s it recovered by itself.
> - A stop that the user asked for is not a failure. The red banner and
Retry make a normal action look broken.
> - #19369 stopped resource waits from showing as failed attempts. This
is the same banner, reached through the Interrupt path.
> - This pull request shows the Interrupt hand-off as working, and
renders the stopped turn once.
> - The benefit is that steering a running agent looks calm and correct:
one stopped row, no error, and the queued message starts next.

## Linked Issues or Issue Description

Refs #19369 (same banner class, resource-wait path)

**What happened?**
While an agent ran, the user queued a message and clicked Interrupt on
the queued strip. A red banner "Couldn't finish this attempt. Your
message is saved." with Retry appeared at the top of the task. Two rows
showed the same stopped run: "Stopped for 22s" and "Stopped after 21s".
About 20 s later the banner went away and the message was delivered.

**Expected behavior**
A user Interrupt is not a failure. No red banner or Retry. One "Stopped"
row, and the queued message starts next.

**Steps to reproduce**
1. Start a task with a Paperclip Runner agent.
2. While it works, send a message so it waits in the queue strip.
3. Wait more than 10 s, then click Interrupt on the queued strip.
4. See the red banner, Retry, and two "Stopped" rows.

**Paperclip version or commit**
master e482f0f632

**Agent adapter(s) involved**
Not adapter-specific (core bug); seen with Claude API through Paperclip
Runner.

## What Changed

Cause 1 — banner
(`server/src/services/task-interruption-presentation.ts`):
- The Interrupt route cancels the run with
`queuedCommentInterruptQueueId` set to the queued wake, and stamps
`queuedCommentInterrupt.requestedAt` on that wake. The projection skips
its "intentional Stop" rule whenever a pending wake exists, and treats a
pending wake as "working" only for 10 s after the message was *queued*.
A message queued earlier than 10 s before Interrupt, or a cleanup that
takes longer than 10 s, fell through to `state: "failed", canRetry:
true`.
- The projection now reads `queuedCommentInterruptQueueId` from the run
and `queuedCommentInterrupt.requestedAt` from the wake (both bounded
strings in the existing batched queries). When the cancelled run was
stopped for exactly the pending wake, it returns `working` for up to 5
min after the click. Pause, approval, reconnect and other user actions
stay first. A pending Retry preparation and exhausted system recovery
keep their own presentation. After 5 min, a hand-off that never started
shows one Retry, as before.

Cause 2 — two rows (`ui/src/components/TaskChatThread.tsx`):
- When a native runner turn ends, the live tail stays until the settled
turn *and* its reply comment render, or a 15 s backstop expires. A
stopped turn posts no reply, so the tail stayed for 15 s next to the
settled turn. That gave "Stopped after 21s" (live tail) and "Stopped for
22s" (settled turn).
- A cancelled settling run now hands off as soon as its settled turn
renders.

Tests:
- `server/src/__tests__/task-interruption-query.test.ts`: new
embedded-Postgres test drives the real batched query with the exact
`resultJson` the Interrupt route writes. It checks `working`/no Retry/no
Sentry failure capture, a run stopped for a different queue still fails,
and the 5 min bound.
- `ui/src/components/TaskChatThread.test.tsx`: new test renders a live
native runner turn, then the cancelled run with no reply. It checks
there is no live tail and exactly one "Stopped" row.

## Verification

Red on master (tests added before the fix):

```
$ npx vitest run src/__tests__/task-interruption-query.test.ts -t "queued-message Interrupt"
 FAIL  task interruption latest run query > shows a queued-message Interrupt as handing off, not as a failed attempt
AssertionError: expected { …(8) } to match object { state: 'working', …(2) }
-   "canRetry": false,
+   "canRetry": true,
-   "state": "working",
+   "state": "failed",
 Tests  1 failed | 18 skipped (19)
```

```
$ npx vitest run src/components/TaskChatThread.test.tsx -t "interrupted native turn"
 ❯ src/components/TaskChatThread.test.tsx:5528:82
    expect(container.querySelector('[data-testid="task-chat-live-transcript"]')).toBeNull();
 Tests  1 failed | 368 skipped (369)
```

Green after the fix:

```
$ npx vitest run src/__tests__/task-interruption-query.test.ts src/services/task-interruption-presentation.test.ts
 Test Files  2 passed (2)
      Tests  60 passed (60)

$ npx vitest run src/components/TaskChatThread.test.tsx -t "interrupted native turn"
 Tests  1 passed | 368 skipped (369)
```

Local `pnpm verify` (affected Vitest selection) result is added in a
follow-up comment; required CI supplies typecheck, build and the full
suite.

## Risks

- Low risk. Both changes are presentation only. Admission, cleanup and
Stop gates do not change.
- A hand-off that is blocked for a long time now shows no banner for up
to 5 min. The queued strip still shows its own wait text ("Waiting for
the previous run to finish recovery…") during that time, so the wait is
visible. After 5 min, Retry returns.
- The thread change applies only to a settling run with status
`cancelled`. Failed and succeeded runs keep the existing reply-comment
hand-off.
- Not in scope: the task status icon changed to `todo` during the
hand-off. That is the issue status, not this projection.

## Model Used

- Claude Opus 5.5 (`claude-opus-5-5`), Anthropic, via Claude Code with
tool use (shell, file edit, test execution).

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have searched GitHub for duplicate or related PRs and linked
them above
- [x] I have either (a) linked existing issues with `Fixes: #` / `Closes
#` / `Refs #` OR (b) described the issue in-PR following the relevant
issue template
- [x] I have not referenced internal/instance-local Paperclip issues or
links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip`
URLs)
- [x] My branch name describes the change (e.g. `docs/...`, `fix/...`)
and contains no internal Paperclip ticket id or instance-derived details
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [ ] All Paperclip CI gates are green
- [ ] Greptile is 5/5 with no open P2s, recommendations, or follow-ups
- [x] I will address all Greptile and reviewer comments before
requesting merge

🤖 Generated with [Claude Code](https://claude.com/claude-code)

---------

Co-authored-by: Claude Opus 5.5 <noreply@anthropic.com>
2026-11-06 17:18:04 -06:00
DottaandPaperclip c9391720a1 fix(heartbeat): send saved follow-ups after task completion (#19600)
## Thinking Path

> - Paperclip manages agents and their work.
> - Task messages remain in a durable queue while an earlier run saves
its result.
> - That result can mark the task done before the user sends the saved
messages.
> - Send records current user intent, but its wake guard allowed only
active task states.
> - The old queue therefore remained pending with an obsolete
finalization message.
> - This change admits that exact Send receipt and reopens the task
through the issue service in the successor transaction.
> - The agent can receive the saved input once while the completed
result remains unchanged.

## Linked Issues or Issue Description

**What happened?**

Send on a saved message can leave the message queued after its native
predecessor succeeds and commits. The old wait message remains visible.
Allowing admission alone also fails: continuation construction rejects a
task that remains done.

**Expected behavior**

Explicit Send must deliver the saved input once through normal
admission. It must retain the previous run and its result.

**Steps to reproduce**

1. Save a follow-up while a native run finishes its result.
2. Let that run succeed, commit its accepted result, and mark the task
done.
3. Send the saved follow-up. Before this change, the receipt stays
deferred.

Related public work: Refs #19542. That change selects recovered
workspace files. This change handles the later saved-message admission.
Refs #19602 for the independent workflow fixture repair required by CI.

## What Changed

- Allow the exact explicit Send wake guard to accept a done task. Keep
automatic recovery and cancelled task guards unchanged.
- Reopen the task through the company-scoped issue service after
admission gates pass. Commit reopening, queue consumption and the
successor together. Publish the audit after commit.
- Add a native succeeded/committed predecessor regression with unchanged
saved work and one successor after two resume calls.
- Verify real heartbeat startup under the clicking operator. Keep
automatic input, cancelled tasks and paused agents held.
- Check workspace preflight for the prospective reopened task. Use the
normal company-scoped transition if preflight blocks a done task, so its
completion metadata is cleared.
- Check a successful native predecessor for its committed accepted
result, current ownership and pending cleanup. Keep approvals and
questions effective even without a recovery action.
- Document the saved Send contract and update the queue test dependency.

## Verification

- Final merge qualification for
`675914f0fa9b5eb1d2c9c8fcd448e0669d0c4836`: all 56 applicable status
checks pass, with no pending or failed checks. [Final
CI](https://github.com/paperclipai/paperclip/actions/runs/42307623559)
includes typecheck, build, all applicable test and E2E shards, and
aggregate verification. Current-head Greptile is 5/5; all five review
threads are resolved. Any paused or queued application review is not
claimed as a new completed review.

- Final base qualification at
`675914f0fa9b5eb1d2c9c8fcd448e0669d0c4836`: official preflight passes
(1.5s); all six integrated model-normalization cases pass (19.07s); both
affected test typecheck layers pass. The integration changes no
production server/shared/Runner/adapter inputs, so the preceding 12-case
Send proof, two ordinary status guards, and unchanged production
typecheck layers remain applicable. Fresh final-head CI supplies broad
coverage.

- New review regression: both failed and cancelled native predecessors
on a task manually marked Done fail before the repair with
`continuation_task_ownership_changed` through real
`resumeQueuedCommentInterrupt` admission. At
`bfb0eff7941090ac3ac43ce4366ba2e3d46612e9`, all 12 affected
Send/source/cleanup/workspace/decision cases pass (246.80s), ordinary
Done/cancelled rejection cases pass (2; 100.31s), and all seven server
typecheck layers pass. History validation uses the prospective reopened
status only for an already-verified explicit native Send. No status is
changed during a dry run.
- Prior `e64e4bb1` CI passed the affected serialized server suites,
including the complete saved-message route suite, typecheck and build.
General server shard 4 still failed two unrelated stale default-model
expectations (`gpt-5.6-sol` versus the new `gpt-6.1-sol` default). The
equivalent repair has already merged in #19610 as
`8621bcf53ee2e4bbefb7d193add42dd544ca06e8`; the separately prepared
#19645 is closed as superseded. This source fix does not weaken or edit
those assertions.

- Original RED: the committed-source and completed-task startup cases
left the saved receipt deferred.
- Review RED: Done plus an unrunnable isolated worktree created one
successor instead of zero. A successful committed predecessor with
pending lease cleanup also created one instead of zero. The new
Done-to-blocked path retained stale completion time. Pending approvals
and questions each allowed a successor. All failures were captured
before their respective repairs.
- Integrated production revision
`99018264dd1ef002ff3500378184bcd167d9206b`: 417 affected cases pass
across the complete native continuation, responsible-user startup, and
workspace preflight suites (386 + 18 + 13). These include the original
successful startup case and six cleanup/finalization faults that hold
the exact saved receipt until settlement, then deliver it once.
- `pnpm --filter @paperclipai/server typecheck` passes all seven layers
on that integrated head, including the local Runner/SDK dependency
build. Module-boundary, whitespace, and added-code-comment checks pass.
- Normal master integrations preserve branch history. No force push or
assertion weakening was used. Fresh CI and automated review are running
on `675914f0fa9b5eb1d2c9c8fcd448e0669d0c4836`, which normally integrates
the already-merged #19610 fixture repair after the reproduced inherited
CI failure.
- The earlier CI attempt failed in five unchanged workflow fixture cases
because IMAGE_ONLY was unset. The merged #19602 repairs that fixture. A
later inherited duplicate default in that independent fixture has a
separate repair; this PR does not edit it.
- Follow-up route-fixture RED: three existing native queue delivery
cases failed because their fixture marked a run successful without an
accepted result or committed finalization. The same three cases pass
after the fixture records the complete native success contract (42.08s);
delivery assertions and production gates are unchanged. The affected
test-tree TypeScript layer also passes. The full route run passed all
119 assertions but failed its 30-second database teardown hook, so it is
not recorded as a suite pass. That result is retained. One unchanged
bounded rerun was stopped after more than 15 minutes without a final
verdict; it is inconclusive, not a pass.
- Final integrated head `e64e4bb1`: all 13 focused route and
completed-task admission cases pass across two real-PostgreSQL suites
(188.95s), including the three repaired route fixtures and every new
cleanup/finalization/decision hold. Fresh preflight passes; all seven
server typecheck layers pass. Required final CI supplies the broader
route and server coverage.
- These tests use real PostgreSQL and normal admission, cleanup, queue
consumption, and startup services. The startup suite controls the
provider boundary. Hosted provider acceptance remains pending normal
deployment.

## Risks

- Explicit Send can reopen a done task. This is limited to its validated
saved receipt and current assignee. A cancelled task remains held.
- Reopening uses the existing company-scoped issue transition and shares
the successor transaction. A failed admission does not reopen the task.
Provider Stop, workspace, approval, pause and budget checks retain their
existing owners.
- Cleanup and pending decisions retain the done task and saved receipt.
An unrunnable workspace uses the existing blocked-task diagnostic. No
schema or runtime package changes.

## Model Used

- OpenAI Codex, GPT-6 family; exact serving snapshot/context window not
exposed; repository analysis, code editing, tool execution.

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have searched GitHub for duplicate or related PRs and linked
them above
- [x] I have either (a) linked existing issues with `Fixes: #` / `Closes
#` / `Refs #` OR (b) described the issue in-PR following the relevant
issue template
- [x] I have not referenced internal/instance-local Paperclip issues or
links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip`
URLs)
- [x] My branch name describes the change (e.g. `docs/...`, `fix/...`)
and contains no internal Paperclip ticket id or instance-derived details
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [x] All Paperclip CI gates are green
- [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups
- [x] I will address all Greptile and reviewer comments before
requesting merge

---------

Co-authored-by: Paperclip <noreply@paperclip.ing>
2026-11-06 17:15:07 -06:00
DottaandPaperclip 2e340d6235 fix(ui): show unread message counts in agent chat pickers (#19627)
## Thinking Path

> - Paperclip helps people manage AI agents and their work.
> - People switch between agent chats to read replies.
> - The agent picker does not show how many messages are unread.
> - People need that count before they select a chat.
> - The chat list already has the viewer's read state.
> - This pull request adds numeric badges from that shared list.
> - People can find unread replies without extra requests for each
agent.

## Linked Issues or Issue Description

**What existing behavior does this improve?**

The chat header agent picker and the secondary sidebar's Add chat
picker.

**Subsystem affected**

Agent Chat UI, shared task types, and the chat read-state service.

**Current behavior**

The pickers do not show the unread message count for each agent.

**Proposed behavior**

Show the unread count beside each agent. For example, show 3 for three
unread agent messages. Hide the badge when the count is zero. Keep
switching available while chat data loads.

**Reason and benefit**

People can see which chats need attention before they switch. The count
uses the existing shared request and cache.

**Breaking changes**

The chat response gains an optional `unreadMessageCount` field. Existing
fields and read receipts keep their behavior. There is no database
migration.

**Additional context**

Related: #19425 changes chat structure. This change adds counts to the
current agent pickers. The duplicate search found no PR for these count
badges.

## What Changed

- Count unread agent comments in the existing grouped read-state query.
Keep company and viewer scope.
- Exclude human messages, deleted comments, system notices, and
fast-response receipts.
- Pass memoized count maps to both agent pickers. Use a direct lookup
for each row.
- Show numeric badges and accessible singular or plural labels.
- Test count changes, account isolation, cached opens, search, and large
agent lists.
- Update the chat stories, fixture data, and development guide.
- Make the Slack owner retry-deadline test deterministic after
reproducing its CI failure.

## Verification

- On current head `05f5fa6201`, the [main CI
workflow](https://github.com/paperclipai/paperclip/actions/runs/42305845930)
passed, including build, typecheck, all applicable test shards, browser
shards, and final verification. The prior server shard 2, 6, and 7
failures do not recur.
- [Greptile's current-head
review](https://github.com/paperclipai/paperclip/pull/19627#issuecomment-6696161631)
is 5/5, its check succeeded, and both previous review threads are
resolved. Current head check inventory is complete: 55 successful
checks, three intentional skips, and no pending or failed checks. The
Paperclip application review summary reports paused; no new completed
Paperclip review is claimed. Its existing findings are resolved, and the
independent current-head Greptile review is 5/5.

- Current head `05f5fa6201` merges master `8621bcf53e` to resolve an
import conflict. Master now includes the same model-default test repair.
This branch keeps its upstream import, so that file no longer differs
from master.
- After this merge: all 21 server tests in the Slack owner and
model-default suites pass, all 22 tests in the three picker/sidebar
suites pass, and token gates pass. The standard preflight still cannot
build Rust because `cargo` is absent. Fresh CI must supply the broad
checks.

- Head `7d125fb8c7` replaces the Slack owner test's real timer wait with
the worker's existing clock input. It checks that the intent stays
pending one millisecond before the retry deadline and clears at the
deadline. All 15 Slack owner integration tests pass locally. Runtime
retry behavior is unchanged.
- On `4cfb1e9d55`, both review checks gave 5/5. CI [server shard
2](https://github.com/paperclipai/paperclip/actions/runs/42302458830/job/128183671349)
failed the Slack credential-lease retry test. The same assertion failed
in an unchanged local run. A diagnostic run with added logging passed;
the exact timer deviation was not captured. The new test removes the
real-time wait assumption and checks the clock boundary directly. The
earlier model-default and cleanup failures did not recur in that CI run.

- On `a3378dfc40`, both Greptile and Paperclip Review gave 5/5 with no
open findings. Typecheck, build, all eight browser shards, and most test
shards passed.
- That CI attempt failed two server shards. The model-default test still
expected `gpt-5.6-sol`, while the current default is `gpt-6.1-sol`. I
reproduced both failures locally. Commit `4cfb1e9d55` uses the exported
default-model constant; all six tests in that suite now pass. Production
model selection does not change.
- The retained-cleanup backlog test exceeded its 15-second limit in
[server shard
6](https://github.com/paperclipai/paperclip/actions/runs/42299858777/job/128175193320).
The unchanged test passes locally with the same limit. Its CI timeout
cause is not established. No assertion or timeout was changed. The fresh
CI run must recheck it.

- Review repair: commit `0db631b215` keeps the existing-chat and
unread-agent arrays stable when chat data and the active agent do not
change. A new 500-agent test fails before the repair and passes after
it. The test also checks count refreshes.
- The first CI typecheck failed on duplicate `IMAGE_ONLY` and
`TESTOPS_REQUESTED` keys in `tests/runner-e2e/workflow-target.test.ts`.
This was present in upstream code. Master commit `e482f0f632` removes
the duplicate keys. This branch now includes that commit. All nine
workflow-target tests pass locally.
- After the latest master merge: all 22 tests in the three affected
picker/sidebar suites pass. Before that merge, all 38 focused UI tests
passed.
- The current head is `05f5fa620134ad199a3d85b66fb2eb93d3bb6077`. All
current status checks are complete, the aggregate verify gate succeeds,
mergeability is CLEAN, and no unresolved review threads remain. The
maintainer has instructed normal merge after checks pass.

- After merging current master: 37 focused UI tests pass across
AgentChatPicker, CoordinatorAgentSwitcher, AgentConversationsSidebar,
useAgentChatRead, and SidebarAgentChats.
- After merging current master: all 38 proactive-chat integration tests
pass with a real disposable PostgreSQL database. They check counts of 2,
1, and 0 at exact read cutoffs.
- The prior revision passed UI typecheck and build, shared build,
isolated low-memory server typecheck, token gates, and 30 map/catalog
tests.
- The 500-agent test bounds index work and count lookups. Search does
not rebuild the existing-chat index.
- Browser checks used production components with simulated API data.
Dark, light, mobile, and Add chat cases passed. Counts of 3 and 12
stayed visible through search. Read agents had no badge. Cached opens
made no chat API requests.
- Twenty local cached opens took 34.5–57.6 ms, with a 38.4 ms median.
This is an unthrottled fixture measurement.
- Earlier full local checks could not complete because Rust cargo is
absent and the workspace has limited memory. The standard worktree
preflight also stops at missing cargo. Required CI must supply broad
checks for this PR head.
- The first server typecheck ran out of memory while Storybook was
active. Its isolated low-memory retry passed. No visual baseline
comparison or live provider delivery is claimed.

## Risks

- Low risk. The count replaces a boolean aggregate in the same grouped
query. Very long chat histories still need that existing scan.
- A count can be stale until the existing chat-list cache refreshes.
Read receipts still control the unread cutoff.
- The change adds no polling, per-agent history request, database
migration, or permission change.

## Model Used

OpenAI GPT-6 through Codex, with code editing, terminal tools, and
browser verification. The runtime did not expose a more specific served
model ID or context-window size.

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have searched GitHub for duplicate or related PRs and linked
them above
- [x] I have either (a) linked existing issues with `Fixes: #` / `Closes
#` / `Refs #` OR (b) described the issue in-PR following the relevant
issue template
- [x] I have not referenced internal/instance-local Paperclip issues or
links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip`
URLs)
- [x] My branch name describes the change (e.g. `docs/...`, `fix/...`)
and contains no internal Paperclip ticket id or instance-derived details
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [x] All Paperclip CI gates are green
- [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups
- [x] I will address all Greptile and reviewer comments before
requesting merge

---------

Co-authored-by: Paperclip <noreply@paperclip.ing>
2026-11-06 17:10:56 -06:00
Nicky LeachandClaude Opus 5.5 913102870d fix(environments): fill the managed instance default once, under a lock (#19632)
## Thinking Path

> - Paperclip is the open source app people use to manage AI agents for
work
> - On a managed instance under `enableManagedSandboxOnly`, boot points
the instance default at the managed sandbox when nothing deliberate is
set
> - That write read the default and wrote it later without a lock. Two
overlapping boots, or a boot and an admin write, could overwrite a value
the other had just committed
> - A revert path also reset that stamped default whenever the mode was
turned off, so a platform-filled default could change again later
> - A planned plugin-environment default should fill only an unset
default and never change a set one, which needs every instance's default
to stay set
> - This pull request makes the fill one locked transaction and removes
the revert, so a filled default is an ordinary set value
> - The benefit is a single, race-free rule: boot fills an unset default
once, and nothing changes a set default afterwards

## Linked Issues or Issue Description

Refs #19551 (the plugin-environment default that builds on this rule)

**Subsystem affected**
Server environments: the managed environment bootstrap and the instance
settings route.

**Problem or motivation**
`applyManagedEnvironments` read the instance default, decided, and wrote
it in separate steps with no lock, so a concurrent boot or admin write
could be overwritten. When `enableManagedSandboxOnly` was not declared,
a revert reset a default the platform had filled. That needed a
`managedDefaultStamped` marker, plus a marker clear on every admin
default write. A later boot could therefore change a default that had
already been set.

**Proposed solution**
Fill the default in one transaction that locks the instance default row
and rechecks it. Fill only an unset, local or deleted default. Remove
the revert and its marker, so a filled default behaves like any other
set value.

**Alternatives considered**
Keeping the revert and adding locks to it. A revert on a mode change
would still move an existing instance's default later, which a fill-only
plugin default cannot tolerate.

**Roadmap alignment**
This narrows existing managed-environment behaviour. It adds no product
surface.

## What Changed

- New `server/src/services/managed-instance-default.ts`:
`fillUnsetInstanceDefault(db, environmentId)`. In one transaction it
creates the settings row if needed, locks the instance default row (`FOR
UPDATE`), and rechecks the current value. It writes only when the
default is unset, names the local environment, or names a deleted
environment. Any other set default is kept.
- `server/src/services/managed-environments.ts`:
- Under `enableManagedSandboxOnly`, the managed sandbox fill now uses
that helper, through a new `fillInstanceDefault` test seam.
- The mode-off revert and the `managedDefaultStamped` marker are
removed.
- The unused `instanceSettings` seam option is removed, along with the
`getById`, `update` and `findManagedSandboxEnvironment` methods of the
environments seam.
- `server/src/routes/instance-settings.ts`: an explicit default write is
a plain `update` again. The marker clear and its transaction are gone.
- `doc/DEVELOPING.md`: the "Managed environments" section states the
fill rule.

Existing rows may still carry `managedDefaultStamped` in their metadata.
Nothing reads it any more, and it is not part of the managed stock hash.

## Verification

- `cd server && npx vitest run
src/__tests__/managed-instance-default.test.ts` (embedded Postgres):
- The fill writes an unset default, including on a fresh instance with
no settings row. It also writes a default that names the local
environment, or one whose environment was deleted.
- It never changes a default set to an ssh, plugin or other sandbox
environment, and leaves a default that already names the target alone.
- Controlled overlap: an uncommitted admin default write makes the fill
wait, and the fill then keeps the admin's value. This test fails without
the row lock.
  - Two overlapping fills: exactly one writes.
- Real boot pass: the default is filled under managed-sandbox-only and
stays the same after a boot with the mode off. A set default stays on
every boot.
- `npx vitest run src/services/managed-environments.test.ts
src/services/managed-environments-plugin-entries.test.ts`: the fill runs
only under managed-sandbox-only, with the managed sandbox row. It never
runs for a plugin environment. Nothing is written when the mode is off.
A failed fill does not fail the ensure.
- `npx vitest run src/__tests__/instance-settings-routes.test.ts`: an
explicit default write is a plain update that touches no environment
row.
- `npx vitest run src/__tests__/managed-plugin-environments.test.ts
src/__tests__/environment-routes.test.ts
src/__tests__/server-startup-feedback-export.test.ts
src/__tests__/instance-settings-service.test.ts`: pass.
- `pnpm --filter @paperclipai/server typecheck` passes.
- I did not run the full `pnpm test:run`, `pnpm -r typecheck` or `pnpm
build`. CI covers them.

## Risks

- Behaviour change: when `enableManagedSandboxOnly` is turned off for an
instance, a default the platform filled with the managed sandbox now
stays. Local execution is still allowed then, but it is no longer the
default unless an admin picks it.
- No schema change. Stale `managedDefaultStamped` keys stay in some row
metadata and are ignored.
- The fill holds the instance default row lock for one short transaction
at boot.

> For core feature work, check [`ROADMAP.md`](ROADMAP.md) first and
discuss it in `#dev` before opening the PR. Feature PRs that overlap
with planned core work may need to be redirected — check the roadmap
first. See `CONTRIBUTING.md`.

## Model Used

- Claude Opus 5.5 (`claude-opus-5-5`), Anthropic, through Claude Code
with tool use (file edits, shell, test runs).

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have searched GitHub for duplicate or related PRs and linked
them above
- [x] I have either (a) linked existing issues with `Fixes: #` / `Closes
#` / `Refs #` OR (b) described the issue in-PR following the relevant
issue template
- [x] I have not referenced internal/instance-local Paperclip issues or
links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip`
URLs)
- [x] My branch name describes the change (e.g. `docs/...`, `fix/...`)
and contains no internal Paperclip ticket id or instance-derived details
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [x] All Paperclip CI gates are green
- [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups
- [x] I will address all Greptile and reviewer comments before
requesting merge

🤖 Generated with [Claude Code](https://claude.com/claude-code)

Co-authored-by: Claude Opus 5.5 <noreply@anthropic.com>
2026-11-06 15:01:58 -08:00
Devin FoleyandPaperclip 8621bcf53e Cancel subscription sign-in requests when leaving agent setup (#19610)
Back during pending subscription sign-in could accept a late response and
reopen agent setup. Abort pending reads, release abandoned sessions, and
ignore stale responses. Wait for cleanup before starting a replacement,
and preserve sessions belonging to another account or environment.

Cover deferred resume/start/prompt responses for both providers, local
login cancellation, quick reselection, and browser request abort. Stabilize
Runner fixtures and normalization assertions exposed by integration CI.

Verified: 483 focused UI tests, six onboarding browser cases, UI typecheck
and token gates, Runner fixture checks, and the complete CI run on
221f2e3eb7. Greptile scored 5/5;
all review threads are resolved. Earlier failures and recovery evidence
remain in the PR description.

Co-Authored-By: Paperclip <noreply@paperclip.ing>
2026-11-06 14:31:11 -08:00
DottaandPaperclip 44c60c7221 Verify default skill sync through two real cold sleep cycles (#19191)
## Thinking Path

> - Paperclip is the open source app people use to manage AI agents for
work.
> - Automatic skill sources check upstream every five minutes.
> - The domain deadline contract can hand future work to a durable wake
alarm.
> - A saved deadline or a worker unit test does not prove that a stopped
tenant resumes the real producer.
> - This pull request checks the default cadence through the actual app
and a matching service checkout.
> - It checks two cold starts and three distinct persisted skill
revisions with real clocks.
> - The benefit is repeatable local evidence without changing production
timing or authority.

## Linked Issues or Issue Description

Refs: #19001, #17008, #17923.

This is a test and documentation follow-up to #19001. #19001 is now
merged; this PR targets master. Feature code remains in that merged
foundation. #17008 covers the earlier source worker change. #17923
covers separate skill-cache retention; this PR does not change that
behavior.

A scoped search of public PRs and issues found no duplicate
default-cadence cold-cycle acceptance test. No matching public issue was
found. The enhancement fields follow.

**Pre-submission checklist**

This improves checks for an existing feature. It adds no product
endpoint or execution authority. The public related-work search is
complete.

**What existing behavior does this improve?**

Verification of automatic skill-source updates across a durable idle
handoff and cold restart.

**Subsystem affected**

`server/` test fixtures and development documentation.

**Current behavior**

Domain tests cover claims, access and future deadlines. They do not
prove the full default-300-second path from ordinary source attachment
through signed tenant reports, durable alarms, stopped compute and a
changed persisted skill.

**Proposed behavior**

An opt-in launcher checks bootstrap first, then two full real-clock
cycles. Ordinary CI can run the transport controls without the host
fixture. The launcher-specific worker assertion runs only when prewire
is requested, and fails closed in that lane.

**Reason and benefit**

The test can detect an early refresh, a lost deadline, a stale proof, an
ACK after physical stop, a failed cold restart or a producer that does
not publish changed contents.

**Breaking changes**

None to product APIs, schema, cadence, authorization, claims or retry
policy. Existing maintenance-helper defaults stay unchanged.

**Additional context**

The opt-in host flow needs an authorized matching service checkout, its
normal compiled acceptance bridge, Node 22 and two owned PostgreSQL test
databases. The standalone controls do not need that service or
PostgreSQL. Roadmap review places this under existing Skills Manager and
Cloud deployment verification, not a new core feature.

## What Changed

- Add an opt-in default-cadence acceptance test and checked-in launcher.
- Reuse real server startup, managed tenant authority and the ordinary
project attachment route. Control only the remote Git snapshot boundary;
keep actual authorization, scanning, claims and publication.
- Use actual signed tenant routes and the matching service's gate, sleep
controller and PostgreSQL wake-alarm store. Stop and restart real app
children through a controlled local provider.
- Preload the Node transport guard before coordinator, worker and child
module work. Check worker-local and child PID, thread and source-hash
receipts. Keep caught unexpected transport attempts fatal.
- Require both persisted refresh times and actual upstream handler
timestamps to be at or after each original deadline.
- Join physical callbacks during bridge close, stop a late wake-created
child, and preserve the original cleanup budget. Add a real
IPC/HTTP-child counterfactual.
- Accept valid owned HTTP options paths without allowing Unix sockets or
unknown origins. Remove the unused App helper export.
- Add finite transport and launcher controls. Defer only the
launcher-specific parent assertion in vanilla CI. Keep all subprocess
controls default-runnable.
- Add optional child entry, preload and bounded pool settings to the
existing test helper. Preserve its defaults and the real observer test
body.
- Remove added explanatory comments under the contribution policy.
Preserve executable syntax, directives and literals.
- Document pinned setup, fresh owned databases, bootstrap and full
two-cycle commands in `doc/DEVELOPING.md`.

The diff against the intended base contains nine test/helper/launcher
files and this one document. It adds no production feature code or Cloud
source to the App repository.

## Verification

The latest two-file CI repair preserves both original failed jobs. A
newer master workflow introduced two required step inputs absent from
its extracted-step test environment; the faithful false/false inputs now
pass all five existing target-authorization cases, after an actual
missing-input counterfactual failed. A controlled socket case also
reproduces legal reuse of the released runner port; the fixture now
holds that reservation until the preview binds, releases it in finally,
and asserts distinct ports. All original retry/result/accounting
assertions and timeouts stay unchanged. The original Linux listener
owner remains unknown; the control proves this fixture collision
mechanism, not that original attribution. Fresh current-head full CI and
complete reviews are pending.


Current merge-integration candidate:
`f6f686103b7bfd0a4ab83085634c622af3896ecb`, a normal merge after #19001
landed, including actual master
`1c9767d323cf872a266962b9e6b4bd5cbcb57f1c`. All nine acceptance code
files are byte-identical to148a82e5; both parents' documentation
additions survive. Every other path equals actual master. The only
conflict was the old foundation's startup block; current master was
retained in full. Fresh exact-head CI and complete reviews are pending.
The local measurements below belong to their explicitly named revisions;
no fresh full614-second run is claimed.

Current candidate: `148a82e54c502759785407357001c6b50c1439dd`, normally
carrying the current base `8c912e1ba4fc66397a7341ade59373af8075068f`.
All nine acceptance code blobs remain identical to qualified repair
`e092746f4da181c8414c63be71474619a84b97e7`; documentation retains both
parents. The matching built service for the fresh bootstrap is
`389878364b42dd129835d263f91882c5774d5123`, using Node 22.23.4. The App
uses Node 24.22.2 and pnpm 9.15.4.

Use the exact controlled setup and commands in
[doc/DEVELOPING.md](doc/DEVELOPING.md#controlled-default-cadence-sleep-acceptance).
Fresh owned databases and the matching compiled service are
prerequisites; the launcher does not create a cluster or build
dependencies.

- **Current affected semantic check passed**, using actual native
TypeScript 7 and the current generated CI options/references (0.640
seconds). Normal declaration references passed in 11.726 seconds, with
source-matched SDK/shared/kernel/Runner prerequisites and the frozen
current lockfile.
- **Current guarded controls: 44 passed**, plus the same single explicit
real-PG observer deferral, in 4.790 seconds. The executing worker
checked its own global PID/thread/preload source hash and matching
receipt. Guard hash:
`7daf9ae7d2f26e8fcd389b1d560fac1d4e218a8304a2c58e49f646af108165bc`. No
unexpected attempts or PG sockets occurred. Vanilla controls on the
identical repair files passed 22 cases with one explicit launcher-parent
assertion deferral (2.044 seconds).
- **Real cleanup counterfactual:** unchanged old helper failed the
actual endpoint assertion in 1.568 seconds: its late HTTP child remained
reachable after close returned. The same fixed-helper case passed in
1.485 seconds: close waited, the child exited, the port was unreachable
and no IPC error occurred. The isolated driver records only the known
legacy closed-IPC error long enough to inspect cleanup; current helper
requires zero such errors. All recorded processes and ports were
independently checked empty.
- **Fresh current bootstrap passed once**, 16.159 seconds wall / 14.12
seconds Vitest / 12.237 seconds body. The ordinary enabled producer
persisted useful revision 1, cleared its lease and retained exactly
300,000 ms between success and original next deadline. A signed
current-generation report produced the matching
generation/operation-lock SQL ACK before physical child stop (ACK
06:54:02.020 UTC; stop signal 06:54:02.025 UTC). The alarm retained the
original D and D-120 eligibility. Both fixture databases ended with zero
sessions; the coordinator independently audited and normally removed
them. This bootstrap does not execute a due wake or the new v2/v3 timing
assertions.
- **Historical full two-cycle result remains 1/1 passed in 614.213
seconds wall**, at measured App
`74f7c012ca17ad0d7302d76403f5033affb1430b` and service
`2cb54f904031dcf69a32902cd853b43f74d6f301`. Two new processes published
distinct immutable v2/v3 at original D+115 ms and D+98 ms. Exact signed
SQL ACKs preceded both physical stops; real SQL D-120 claims caused both
cold starts. Features, claims and original business deadlines stayed
unchanged.
- Both historical 10.002-second quiet windows kept app SQL, upstream and
outgoing HTTP counts unchanged. Two awake PG sockets remained. Quiet
counts do not mean all connections closed.
- The stronger timing checks are additional assertions, not
retroactively executed results. Offline inspection of the original
receipts confirms persisted successes at D+115/+98 ms and earliest
upstream handler entries at D+44/+30 ms; all five requests in each
refresh group started after D. The exact new pre-sleep request counter
and dispatch-before-handler time were not independently recorded
historically.
- Source review found 19 critical automatic Git producer/runtime files
identical to the measured App. The current active cache helper change
does not run on automatic Git publication and adds no pool. The matching
service carries unchanged measured helper/sleep/controller/alarm seams
through its normal master merge. The current bootstrap and focused
controls qualify the changed cleanup/guard and parent integration. No
fresh current-head 614-second pass or whole-tree identity is claimed.
- Runtime is serialized: worker 1, per-pool limits at most 4, configured
App potential 10 + shared service pool 2 + one observer against server
max 40. Current bootstrap point samples observed at most 3 owned clients
plus the observer; those samples are not a continuous aggregate peak.
App/service guard peaks were 2 each, with zero remaining sockets at
cleanup.

Failures remain accounted for. The first historical bootstrap cleanup
masked an unknown primary error. Later attempts exposed missing
fixture-owned domain metadata and lost origin snapshots; test-only
ownership/cleanup corrections preserved the original assertions and
timeouts. The new causal driver first lacked a final observation, then
encountered sandbox bind EPERM, then exposed the old closed-IPC error;
only the final real endpoint failure above is labeled the cleanup
counterfactual. An offline dependency miss and a generator-cleared
ignored compiler config were retained and corrected without weakening
compiler options. The former inherited policy failure (397 findings) is
resolved by the genuine current-master base/scanner, with zero findings
and seven scanner tests; no unrelated UI site was edited and the gate
was not relaxed.

Historical real TCP observer coverage passed 1/1 in 3.688 seconds.
Comment-only and opt-in-selection carries remain documented in prior
evidence; self-hash changes are metadata exceptions with fresh
executing-worker checks.

The full workspace typecheck, test, build and browser commands were not
run locally for this test-only slice. The current base passes its full
exact-head CI and Greptile 5/5; this leaf now has all 56 exact-head
check runs terminal (54 success, one neutral, one skip), the additional
legacy security status passing, complete current Greptile 5/5 and
Ponytail 5/5 reviews, and all four review threads resolved across all
pages. No live provider or deployed host/database suspension was
exercised.
## Risks

- The host test requires a matching service checkout and compiled
bridge. An unrelated service revision is not a valid substitute.
- Controlled localhost Git, S3 and physical process operations do not
qualify deployed Railway or Neon suspension, external permissions or
provider uncertainty.
- The Node guard does not prove native subprocess transport isolation.
Only finite local Git metadata and Node version commands were needed.
- Two short SQL/HTTP quiet windows do not establish strict 90-second
host acceptance. Separate plugin-host LISTEN, MCP wake and other domain
gaps remain open.
- Explicit test URLs are destructive fixture inputs. Use fresh, owned
`_test` databases. The launcher does not start a cluster or choose a
database implicitly.
- Passing CI and review do not qualify deployed suspension; the current
proof boundaries above still apply.

> For core feature work, check `ROADMAP.md` first and discuss it in
`#dev` before opening the PR. This PR adds verification to the existing
feature in its base.

## Model Used

OpenAI `gpt-6.1-sol` assisted with implementation, repository review and
local code execution. OpenAI Codex, based on GPT-6, performed managing
review and integration. The context-window sizes and exact served
backend snapshots were not exposed.

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have searched GitHub for duplicate or related PRs and linked
them above
- [x] I have either (a) linked existing issues with `Fixes: #` / `Closes
#` / `Refs #` OR (b) described the issue in-PR following the relevant
issue template
- [x] I have not referenced internal/instance-local Paperclip issues or
links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip`
URLs)
- [x] My branch name describes the change and contains no internal
Paperclip ticket id
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [ ] All Paperclip CI gates are green — fresh merge-head gates pending
- [ ] Greptile is 5/5 with no open P2s, recommendations, or follow-ups —
fresh merge-head review pending
- [x] I will address all Greptile and reviewer comments before
requesting merge


### Current master reconciliation (2026-11-06)

Merged actual master `e28158b353fd274f0322be76d62cd223e0df599f`
normally. All nine qualified acceptance code files and the held-port
repair remain byte-identical. Upstream independently landed the workflow
input fix in #19602; the fixture now uses that exact upstream version
once, avoiding duplicate object keys in a squash merge. All other master
changes are preserved. The earlier two-cycle local evidence remains
source-specific; no fresh 614-second run or deployed suspension is
claimed. This new head requires fresh CI and bot reviews.

### Actual combined-tree typecheck failure and repair

CI job `128156887548` failed with TS1117 at workflow-target.test.ts:22:
two independently landed master fixes declared the same `IMAGE_ONLY` and
`TESTOPS_REQUESTED` keys. The complete original log is retained. A
further normal master merge now removes the duplicate declarations,
retaining exactly one false/false pair and every original assertion. All
nine qualified acceptance code paths and the held-port repair remain
byte-identical; unrelated master changes are preserved. This is a
concrete compiler failure and source repair, with fresh exact-head
CI/reviews required.

---------

Co-authored-by: Paperclip <noreply@paperclip.ing>
2026-11-06 15:55:05 -06:00
e482f0f632 fix(server): shed only retryable object-journal reads under load (#19176)
Client polling can exhaust the shared object journal queue and reject log persistence. Bound ordinary object-log and trace reads, keep persistence and internal verification queued, and return retryable 503 responses when reads are busy. Leave feedback exports unsent until every log page is available.

Validation: 72 latest-master affected tests and 10 workflow tests pass locally, with the workflow fixture passing strict TypeScript checks. The preceding broader run passed 280 server tests with two opt-in S3 skips. All applicable checks on d0a937768d are green (56 success, three skipped); exact-head Apex review is 5/5 with no unresolved findings. Background persistence still has no fixed queue bound during a prolonged storage outage.

Co-Authored-By: Claude Opus 5.5 <noreply@anthropic.com>
Co-Authored-By: Paperclip <noreply@paperclip.ing>
2026-11-06 13:47:25 -08:00
DottaandClaude Opus 5.5 02a2299173 feat(codex): default Codex to gpt-6.1-sol, half the gpt-5.6-sol price (#19623)
## Thinking Path

> - Paperclip is the open source app people use to manage AI agents for
work
> - Codex agents run through Paperclip Runner or the legacy
`codex_local` harness, and the runner E2E suites run paid Codex cells
> - The shared Codex default and many selections preferred `gpt-5.6-sol`
> - The reviewed OpenAI rate card in
`server/src/services/codex-pricing.ts` (`openai-standard-2026-09-30`)
prices `gpt-6.1-sol` at $2 input / $0.10 cached / $10 output per 1M
tokens, and `gpt-5.6-sol` at $4 / $0.40 / $20
> - So every default run and every paid Codex eval cell cost twice as
much as necessary
> - This pull request moves every place that prefers or selects
`gpt-5.6-sol` to `gpt-6.1-sol`, and keeps historical facts, rate cards
and compatibility fallbacks on `gpt-5.6-sol`
> - The benefit is half the token price for new default Codex agents and
for the Codex E2E and TestOps cells

## Linked Issues or Issue Description

**What existing behavior does this improve?**
The default Codex model for new agents and the Codex model that the
runner E2E suites and TestOps plans select.

**Subsystem affected**
Adapters (`adapter-utils`, `codex-local`), server native runtime
fallback, UI AI connection pools, Paperclip Runner devtools and live
evals, runner E2E catalog and TestOps mappings.

**Current behavior**
New Codex agents without an explicit model store `gpt-5.6-sol`. The
runner E2E `runner-codex` profile, the Reliability `queue-steer` plan
cell, the Product regression TestOps mapping and the ACPX Codex
qualification selection all use `gpt-5.6-sol`.

**Proposed behavior**
They use `gpt-6.1-sol`. Existing agents that store a model keep it.
`gpt-5.6-sol` stays selectable.

**Reason and benefit**
`gpt-6.1-sol` costs half as much per token on the in-repo reviewed rate
card. The current OpenAI pricing page (retrieved 2026-11-06) shows the
same short-context rates and also lists long-context rates of $4 / $0.20
/ $15 for `gpt-6.1-sol` against $8 / $0.80 / $30 for `gpt-5.6-sol`.

**Breaking changes**
None for stored configurations. See Risks.

## What Changed

Changed defaults and selections (all now `gpt-6.1-sol`):

- `PAPERCLIP_RUNNER_DEFAULT_MODELS.codex` in
`packages/adapter-utils/src/paperclip-runner-permissions.ts`. This also
changes `DEFAULT_CODEX_LOCAL_MODEL`,
`resolvePaperclipRunnerModel("codex", …)`, runner config normalization,
`codex_local` → Paperclip Runner conversion, the UI new-agent and
agent-config defaults, the composer default model and the public MCP
effort lookup.
- `codex-local` `models`: the 5.6 entry is now the literal
`gpt-5.6-sol`, because it used to be `DEFAULT_CODEX_LOCAL_MODEL`. The
list order and contents do not change.
- AI connection pool: a new OpenAI member profile uses
`PAPERCLIP_RUNNER_DEFAULT_MODELS.codex` instead of a hard-coded
`gpt-5.6-sol`.
- Paperclip Runner devtools ACPX Codex default and preset, the
`runner-codex-sol` local provider smoke, and the `acpx-codex-sol` live
workflow candidate.
- `tests/acpx-qualification-models.ts` Codex selection (runner E2E and
runner acceptance ACPX Codex profiles).
- Runner E2E: the `runner-codex` profile follows the default, so all
native Codex cells move. This includes the `runner-codex` cells among
the 52 standard `everyday-workflows` cells and the seven Codex
reliability cells. `runner-codex-mini` stays on `gpt-5.4-mini`. The
Reliability plan `queue-steer` `steeringProfile` is now
`['runner-codex', 'gpt-6.1-sol']`. Its executionId
(`everyday-workflows.runner-codex.daytona.queue-steer`), its fullName
and its TestOps case identity do not change. No separate profile is
necessary.
- `product-regression-testops.mjs`: the declared model for every
`runner-codex` case is now `gpt-6.1-sol` (it was already that for
`configured-repository`).
- `tests/runner-e2e/installed-cli.ts`: the credential-free installed
startup proof opens a session on the default model.
- `tests/runner-e2e/scheduled-prices.json`: add a `gpt-6.1-sol` price
(`openai-standard-2026-11-06`, including 30m/12h cache writes and
long-context rates from the OpenAI pricing page). The weekly scheduled
Codex cells need an exact price for their model, or admission fails
closed.
- Storybook: the composer model picker fixtures, the connection pool
stories and host, and the agent settings preview show `gpt-6.1-sol` as
the default.
- Docs: `doc/DEVELOPING.md` (the Codex conversion default) and
`tests/runner-e2e/EVERYDAY-WORKFLOWS.md` (local matrix, reliability
extras, `queue-steer` row).
- Tests that assert the default now expect `gpt-6.1-sol`. New
assertions: the default has the `0.159.0` CLI floor, the compatibility
fallback is floor-free, the `queue-steer` plan cell runs `runner-codex`
on `gpt-6.1-sol`, and all native Codex everyday cells (standard and
reliability) use `gpt-6.1-sol`.

Deliberately kept on `gpt-5.6-sol`:

- Rate cards: `server/src/services/codex-pricing.ts` and
`packages/paperclip-runner/src/evals/model-pricing.ts`. Old receipts
need them. (The runner eval rate card has no `gpt-6.1-sol` entry. An
unpriced candidate is reported as unpriced, not as zero. I did not add a
rate there because that card has its own version and source.)
- The remote Codex CLI compatibility fallback. A new
`CODEX_LOCAL_COMPATIBILITY_FALLBACK_MODEL = "gpt-5.6-sol"` replaces the
default in `codexModelFallbackCandidates`. `gpt-6.1-sol` needs Codex
0.159.0 or newer, so it cannot be the floor-free last resort. Fallback
behavior is unchanged.
- `tests/runner-e2e/provider-usage.ts`: the implicit request
cache-policy attribution stays qualified only for `gpt-5.6-sol`. I did
not verify that policy for `gpt-6.1-sol`. A `gpt-6.1-sol` response that
omits the write-TTL split keeps its cache-write cost unknown, which is
the existing behavior for unqualified models.
- `tests/runner-e2e/scheduled-measurements.json`: historical
`gpt-5.6-sol` measurements. They no longer match the current suite
definitions, so the forecast reports them as historical only. The
forecast tests now build their synthetic cohorts on the current
definition hash.
- Model catalogs that list `gpt-5.6-sol` as available (`codex-local`,
`cursor-local`, `opencode-local`, Speko voice diagnostics, Pi picker
fixture).
- The `gpt-5.6` → `gpt-5.6-sol` alias for old stored configs.
- Dated or evidence docs: `doc/plans/*`, `doc/adapter-model-audit-*`,
`QUALIFICATION-*`, `doc/connections/MEMORY.md`,
`doc/connections/TASK-REVIEWS-VERIFICATION.md`,
`tests/runner-e2e/CHAT-FEATURES.md`, the Slack eval evidence, and the
S49 soak signature text (the soak failure happened on `gpt-5.6-sol`).
- Test fixtures that parse, price, migrate or round-trip an existing
`gpt-5.6-sol` value (Rust runner tests, driver tests, pricing tests,
stored-config tests, stories that show an existing agent).

## Verification

- `npx vitest run` on every server, UI, adapter-utils and codex-local
test file that mentions `gpt-5.6-sol` or the default, plus all of
`packages/adapter-utils` and `packages/adapters/codex-local`: 5,483
passed. Three timeouts under load (`sandbox-managed-runtime`,
`acp.quota`) passed when rerun.
- `packages/paperclip-runner`: `vitest run` for `src/eval`, `src/evals`,
`src/drivers/acpx`, `src/drivers/codex`, `src/cli`, `src/contracts`,
`src/backends`: 2,641 passed.
- `node --test tests/runner-e2e/reliability-testops.test.mjs
tests/runner-e2e/product-regression-testops.test.mjs`: 28 passed.
- `node tests/runner-e2e/run-unit.mjs`: all model, catalog, reliability,
scheduled and TestOps tests pass. Failures remain only in
`copilot-protection-flow`, `denied-target-isolation-flow`,
`pi-controls-flow`, `workflow-target` and `unit-launcher`. These five
also fail on unmodified master in this local environment (filesystem
watch and git environment), and they do not touch models.
- `vitest run --config tests/runner-acceptance/vitest.config.ts`: 19
passed.
- `pnpm test:e2e:runner -- --list --suite everyday-workflows --group
reliability`: the seven `everyday-workflows.runner-codex.daytona.<case>`
cells show `gpt-6.1-sol` with `OPENAI_API_KEY,DAYTONA_API_KEY`.
`--matrix-json` gives 16 reliability cells with the same credentials as
before. `--list --all` shows no `gpt-5.6-sol` cell.
- Typecheck: `adapter-utils`, `adapter-codex-local`, `server`, `ui`,
`paperclip-runner` (TypeScript), and `pnpm test:e2e:runner:typecheck`.
- `pnpm check:token-gates`: clean.
- Not run: paid cells, Rust tests (no Rust change), the browser suites,
and the full `pnpm -r typecheck` / `pnpm build` (CI runs them).

## Risks

- Agents without an explicit model change model on their next save or
normalization, and Paperclip Runner rows with a blank model use
`gpt-6.1-sol` at execution. Stored models, including `gpt-5.6-sol`, are
never rewritten. No migration is necessary.
- `gpt-6.1-sol` needs Codex CLI 0.159.0 or newer with ChatGPT sign-in.
The runner pins `@openai/codex@0.160.0`. On a remote target with an
older image CLI, the existing compatibility check falls back to
`gpt-6-sol` and then `gpt-5.6-sol`, and that probe now runs for
default-model agents too. A legacy `codex_local` agent created with the
new default on a host with an older Codex CLI gets the existing
actionable "upgrade Codex" Test result.
- Qualification: the native Codex profile uses `adapter_constant` model
qualification, so it follows the default. No qualification gate is
dropped. The ACPX Codex qualification selection moves to `gpt-6.1-sol`.
Its next qualification run uses the new model. The provider-usage
cache-policy attribution stays limited to `gpt-5.6-sol`.
- Runner E2E history: the Codex cells change their suite definition
hashes, so earlier `gpt-5.6-sol` results are a separate cohort and do
not count as current.
- The `gpt-6.1-sol` scheduled price uses the file's existing `expiresAt`
(2026-11-19). It needs the same review as the other entries before then.
- No `.github/` change. The Reliability queue-steer cell keeps the
`runner-codex` profile id, so the existing workflow credential and setup
steps still match.

> For core feature work, check [`ROADMAP.md`](ROADMAP.md) first and
discuss it in `#dev` before opening the PR. Feature PRs that overlap
with planned core work may need to be redirected — check the roadmap
first. See `CONTRIBUTING.md`.

## Model Used

- Claude Opus 5.5 (Anthropic), model ID `claude-opus-5-5`, running in
Claude Code with tool use (shell, file edits, web fetch of the OpenAI
pricing page).

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have searched GitHub for duplicate or related PRs and linked
them above
- [x] I have either (a) linked existing issues with `Fixes: #` / `Closes
#` / `Refs #` OR (b) described the issue in-PR following the relevant
issue template
- [x] I have not referenced internal/instance-local Paperclip issues or
links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip`
URLs)
- [x] My branch name describes the change (e.g. `docs/...`, `fix/...`)
and contains no internal Paperclip ticket id or instance-derived details
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [ ] All Paperclip CI gates are green
- [ ] Greptile is 5/5 with no open P2s, recommendations, or follow-ups
- [x] I will address all Greptile and reviewer comments before
requesting merge

Related: #19604 (commits the Reliability TestOps identities; this PR
changes only `steeringProfile` in the same file).

🤖 Generated with [Claude Code](https://claude.com/claude-code)

Co-authored-by: Claude Opus 5.5 <noreply@anthropic.com>
2026-11-06 15:35:34 -06:00
2e35730637 feat(chat): receive sealed Slack events through the current SDK owner (#19019)
## Thinking Path

> - Paperclip manages AI agents and their work.
> - Slack connectors turn authenticated messages into company work.
> - Direct callbacks need an awake tenant.
> - Cloud can retain authenticated asynchronous events until the tenant
wakes.
> - Replay must preserve the original callback proof and current
endpoint authority.
> - Configuration changes must retain registration responsibility
through failures.
> - This PR enrolls verified Slack identities and drains sealed events
through the normal SDK owner.

## Linked Issues or Issue Description

**Subsystem affected**

Server chat connectors and signed Cloud connector delivery.

**Problem or motivation**

Direct Slack Events API delivery depends on an awake tenant. Broker
outages, lost responses and configuration changes must preserve delivery
and registration responsibility. Enrollment failures must also leave
other connector events able to drain.

**Proposed solution**

Stage nonsecret enrollment or retirement intent inside the local
configuration transaction. Let the existing connection-event owner
perform broker requests and retries. Replay sealed events through the
current Slack SDK with their original authentication evidence.

**Alternatives considered**

An early acknowledgment for every callback changes command and modal
semantics. A second delivery ledger duplicates existing ownership.
Reusing a new stack identity to retire old registrations crosses an
authorization boundary.

A companion Cloud broker change is required. Related setup fixes: Refs
#18837, Refs #18878. Kickoff searches found no competing async
enrollment consumer. The ROADMAP's connector setup and access controls
stay in place.

## What Changed

- Persist enrollment and credential-free retirement intent before local
configuration commits. Broker failure does not make a completed pause or
removal look unsuccessful.
- Bind company, endpoint, connection, public ID, generation and
authorized actor. Preserve lost-response responsibility and recover only
the supported same-instance configuration outage.
- Permit an explicit move to a new authorized stack only after confirmed
old retirement. Keep the old identity until the new broker receipt
matches the current intent and generation.
- Show permanent signing-credential failures as attention. Preserve
transient retries and reject uncertain inbound authentication before SDK
admission.
- Drain events and acknowledgments before enrollment reconciliation.
Persist a bounded retry on the exact busy intent so other due endpoints
can enroll or retire. Preserve current custody under concurrent changes.
- Stage retirement in the Apps removal transaction too. Archive the
endpoint and connection, retain the original subject and instance, then
revoke credentials. Retirement does not need the deleted Slack
credential.
- Acknowledge a malformed sealed Slack receipt as invalid once. Keep
actual broker outages on the retry path.
- Run the real configuration, SDK ingress, generation fences and public
Apps removal paths in the default SQL suite. Keep Vitest transport
helpers outside production services.
- Preserve original callback bytes, signature, time and public URL
evidence. Use the existing transactional chat-delivery ledger for
redelivery.
- Provide a checked-in prewire guard and launcher using the current Node
executable. Add broker, worker, SDK, SQL and controlled-process
acceptance.
- Stabilize AI account summaries by ID and grant ID. This fixes a CI
migration-repeat equality failure without changing SQL, authorization or
reconnect behavior.
- Open the four configured database connections before the enrollment
test freezes its clock. Keep all 35 original assertions and all
timeouts.
- Measure status-card dispatch entry before its mock does database work.
Keep the original strict 500 ms bound and check any still-armed earlier
deadline. Bound that fixture's pool to four connections.

## Verification

- Candidate: `54fa701d41b4ced62f4ff338d39b946015670ae3`. Normal merges
preserve master `47027e7` and all owned changes. A read-only merge
assessment against fetched master `cb5d7e44` is conflict-free. The only
overlapping file has separate AI test additions. The branch has not
merged that later master; fresh remote checks must validate the current
PR test tree.
- At this head, normal server production typechecking and declaration
emission passed in 35.24s. The affected actual CI test shard passed in
6.27s. Other unchanged CI layers, 92 affected pure controls and 12 guard
controls retain their source-matched results.
- All **15 default real-PostgreSQL cases passed in 34.66s**, with no
skips or filtering. They cover normal configure and SDK ingress,
rollback, stale generations, malformed receipts, busy-lease fairness,
concurrent intent custody, unknown errors, and public Apps removal.
Removal tests check actual credential revocation, retained retirement
through outage and repeat removal, one ordinary retry and confirmed
retirement, transaction rollback and foreign-company refusal.
- The public removal counterfactual failed before the fix: archival and
credential revocation passed, but the inactive intent was absent. The
same test source passed after the staging call. Separate counterfactuals
also reproduced busy-endpoint starvation and malformed-receipt retries.
Original failures remain retained.
- The paired broker/SDK/process journey passed in 31.98s at ancestor
`0324c011`. It preserves callback proof, lost-ACK redelivery, exactly
one comment, one delivery and one successful controlled process. Its
test, producer, SDK, guard and runtime bytes are unchanged. The new
public Apps archive branch is not called by that journey; its evidence
carries on that checked basis.
- The new SQL cases need no companion Cloud checkout. Normal CI runs
them with the repository fixture. For an existing dedicated PostgreSQL
fixture, set `PAPERCLIP_SLACK_OWNER_TEST_DATABASE_URL` and
`PAPERCLIP_TEST_POSTGRES_ADMIN_URL`, then run `node
server/scripts/test-slack-cloud-owner.mjs` with Node24. The optional
paired launcher still requires the normally built companion Cloud
checkout.
- Every pool was bounded to four or fewer connections. The final 15-case
run sampled three runtime clients plus one observer. The independent
final audit found zero clients and all five recorded processes absent.
Earlier closing-socket observations are kept separate from final
cleanup.
- Earlier unrelated CI failures are documented: [enrollment
timeout](https://github.com/paperclipai/paperclip/actions/runs/41944373937/job/126973483754)
and [status-card observation
bound](https://github.com/paperclipai/paperclip/actions/runs/41944373937/job/126973483843).
The enrollment test retains all 35 assertions and its original timeouts.
A controlled connection probe established the frozen-clock mechanism;
the original remote access history remains unknown. The status-card
fixture measures dispatch entry with the original strict 500ms bound. A
real delayed-dispatch control fails that bound.
- Full local workspace typecheck, build and test inventory was not run
because its embedded-cluster and wider resource paths exceed this local
lease. Exact-head remote CI now passes: 54 successful checks, three
skips and Ponytail's neutral check, with aggregate verification green
and the legacy security context independently confirmed successful. Both
complete bot reviews are 5/5, with all 13 paginated review threads
resolved. Seven execution jobs originally reported runner shutdown; one
diagnostic rerun recovered them and the dependent aggregate check.
Original logs remain retained, and the underlying shutdown cause is
unknown. This is recovery evidence, not a product-fix claim.
- Provider responses are controlled. This proves local SQL, broker, SDK
and process behavior. It does not prove live Slack, agent tools,
synchronous callbacks or deployed suspension.

## Risks

The companion broker is required. Outage or conflicting authority can
leave explicit pending or attention responsibility. A move between
stacks requires confirmation from the old authorized owner first.
Synchronous commands, actions, modal validation, options and challenges
retain their deadlines and endpoint blocker. This slice grants no full
Slack endpoint sleep exemption. No deployed suspension or savings claim
is made.

## Model Used

OpenAI `gpt-6.1-sol` workers through Codex, with reasoning, repository
tools and code execution. The served backend revision and context limit
are not exposed. A GPT-6-family coordinator performed technical review
and integration.

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have searched GitHub for duplicate or related PRs and linked
them above
- [x] I have either (a) linked existing issues with `Fixes: #` / `Closes
#` / `Refs #` OR (b) described the issue in-PR following the relevant
issue template
- [x] I have not referenced internal/instance-local Paperclip issues or
links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip`
URLs)
- [x] My branch name describes the change (e.g. `docs/...`, `fix/...`)
and contains no internal Paperclip ticket id or instance-derived details
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [x] All Paperclip CI gates are green
- [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups
- [x] I will address all Greptile and reviewer comments before
requesting merge

---------

Co-authored-by: Paperclip <noreply@paperclip.ing>
Co-authored-by: Codex <noreply@openai.com>
2026-11-06 15:22:51 -06:00
DottaandClaude Opus 5.5 876a2e4857 fix(recovery): recover a prior boot's unstarted run at lease expiry (#19578)
## Thinking Path

> - Paperclip is the open source app people use to manage AI agents for
work
> - After a server restart, a task must continue automatically and
promptly when that is safe
> - A user clicks Retry, and the server is killed before the new run
starts a process
> - Recovery leaves that run `running` until the orphan reap's
five-minute stale-age threshold passes
> - The user sees nothing happen for about five minutes
> - This pull request recovers that run when its controller lease from
the earlier boot expires
> - The benefit is that the automatic retry starts about one lease
period after the kill, not five minutes later

## Linked Issues or Issue Description

**What happened?**
A Retry admitted a legacy run. The server was killed before the run
recorded a process. The run kept a controller lease from the killed boot
and `executionStage: preparing`. After the restart, live recovery
skipped the run until `updatedAt` was five minutes old
(`server/src/services/heartbeat/recovery.ts`, `staleThresholdMs ?? 5 *
60_000`). Restart-chaos measured 5 m 01 s from run creation to
`process_lost` and the automatic retry, twice (4 m 20 s after the server
was ready).

**Expected behavior**
Recovery should claim the run as soon as the earlier boot's lease
expires. The lease is the only liveness proof for a legacy controller,
and no process was ever recorded.

**Paperclip version or commit**
`master` at `71313207eb`.

**Steps to reproduce**
Click Retry on an interrupted task, then SIGKILL the server within about
one second. Observe the retried run stay `running` for about five
minutes.

## What Changed

- `recoverActiveExecutions` skips the stale-age gate for a legacy
`running` run when all of these are true: its controller lease is
expired (checked by the existing live-lease gate), the lease belongs to
an earlier boot (`controllerBootId !== legacyControllerBootId`), the run
is still `preparing` (no adapter dispatch), and the run has no recorded
`processPid` or `processGroupId`.
- The stage and process fields committed with the revocation are checked
again. If the old controller dispatched before its lease expired, the
run keeps the age guard.
- The existing revocation (`revokeExpiredLegacyControllerWithState`)
still requires the expired boot ID, so a concurrent renewal wins. The
existing `restartInterruptedBeforeDispatch` rule still decides the
single process-loss retry.
- `doc/execution-semantics.md` describes the rule in section 10.
- Two regressions in `server/src/__tests__/live-recovery-work.test.ts`
(embedded Postgres, real residual-recovery workers).

## Verification

- Red before the fix: `recovers a fresh run from a prior boot at lease
expiry ...` failed with `expected 'running' to be 'failed'`.
- Green after the fix: `pnpm exec vitest run
src/__tests__/live-recovery-work.test.ts -t "stale-age|fresh foreign
controller|suppressed live runs"` passes 4/4. The run fails
`process_lost` with `executionRecovery.providerWorkStarted: false`
within seconds of lease expiry, and exactly one retry runs to
`succeeded`.
- Race case: a DB trigger makes the row committed with the revocation
say `dispatching` while the scan saw `preparing`. The run stays
`running`, and no retry is created.
- Guard cases: a run with an expired lease of the current boot, a run
from an earlier boot with a recorded process, and a run from an earlier
boot that was `dispatching` (for example a remote HTTP adapter) all stay
`running` after four minutes.
- Related suites: `heartbeat-process-recovery`,
`heartbeat-observed-workspace-preservation`,
`native-startup-cleanup-recovery`,
`services/heartbeat/recovery.test.ts`, full `live-recovery-work`.
- Live K8 probe (restart-chaos supervisor, local instance, ACPX Claude
agent): the first run fails with a provider error, the probe clicks
Retry, and the server is SIGKILLed 100 ms later, before the Retry run
records a process. The probe then measures how long the Retry run stays
`running`.

| Build | Retry run created to `process_lost` | Server ready to
`process_lost` | Automatic retry run |
  | --- | --- | --- | --- |
  | Base (`71313207eb`) | 300.1 s | 293.5 s | started at 5 m 00 s |
  | This PR | 60.1 s | 54.5 s | started 0.1 s after `process_lost` |

The claim now happens when the killed boot's 60-second controller lease
expires. In this probe the restart took about 6 s, so the claim came
about 54 s after ready. In the restart-chaos waves, kill to ready took
about 41 s, so the claim would come about 20 s after ready.
- A chaos wave with the `retry` trigger (`w-20261106T195715-s2727`,
branch #19513 merged locally) missed the trigger: no Retry was offered
because recovery completed the task automatically (claude t01 PASS). The
probe above makes the Retry-then-kill timing deterministic.

## Risks

- Low risk. The change only removes an age wait. Ownership is still
proved by the expired lease of another boot. A rolling deploy or hot
restart whose earlier instance is still alive keeps renewing its lease,
so the run is not touched.
- Runs with a recorded process, and dispatched runs, keep the
five-minute guard. A process on another host or a remote request is not
inferred dead.
- Native runs are not changed. Their ownership is in
`native_run_finalizations` and startup native recovery.

> For core feature work, check [`ROADMAP.md`](ROADMAP.md) first and
discuss it in `#dev` before opening the PR. Feature PRs that overlap
with planned core work may need to be redirected — check the roadmap
first. See `CONTRIBUTING.md`.

## Model Used

- Claude Opus 5.5 (`claude-opus-5-5`), Anthropic, via Claude Code with
tool use (shell, file edits, test execution). Extended reasoning
enabled.

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have searched GitHub for duplicate or related PRs and linked
them above
- [x] I have either (a) linked existing issues with `Fixes: #` / `Closes
#` / `Refs #` OR (b) described the issue in-PR following the relevant
issue template
- [x] I have not referenced internal/instance-local Paperclip issues or
links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip`
URLs)
- [x] My branch name describes the change (e.g. `docs/...`, `fix/...`)
and contains no internal Paperclip ticket id or instance-derived details
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [x] All Paperclip CI gates are green
- [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups
- [x] I will address all Greptile and reviewer comments before
requesting merge

🤖 Generated with [Claude Code](https://claude.com/claude-code)

---------

Co-authored-by: Claude Opus 5.5 <noreply@anthropic.com>
2026-11-06 15:17:58 -06:00
DottaandClaude Opus 5.5 586caa5f49 fix(native): hand a shutdown-interrupted startup to the next controller (#19596)
## Thinking Path

> - Paperclip is the open source app people use to manage AI agents for
work
> - The native Runner path runs an agent turn through a runnerd process
that the control plane owns
> - A restart of the control plane must keep the task going without a
click, if that is safe
> - A graceful shutdown closes the HTTP listener first and then drains
the heartbeat runs
> - A native run that was between provider dispatch and runnerd backend
setup in that gap failed with `local_runtime_api_listener_unavailable`,
so the drain did not see it as running and did not suspend it for the
next boot
> - This pull request makes that failure a restart detach: the run stays
running with its claim, the drain suspends it, and the next controller
adopts it
> - The benefit is that a SIGTERM in this window no longer spends a
failure and a same-run retry, and the task continues by itself

## Linked Issues or Issue Description

Refs #19530 (the same restart window, before provider dispatch).

**What happened?**

In a restart chaos replay (ACPX Claude, local runner), a
restart-recovered run got SIGTERM while
`createRunnerdBackendWithinSessionClaim` built the runnerd backend.
`resolveLocalRuntimeApiUrl()` threw
`local_runtime_api_listener_unavailable` because shutdown had already
closed the listener. The run settled `failed`. The drain then logged
`restartSuspendedRunIds: []`. The next boot used the one bootstrap
retry. A second SIGTERM hit the same window, and the task stopped at a
manual Retry.

**Expected behavior**

A run that this process cannot continue because it is shutting down is
handed to the next controller. It is not settled as failed.

**Steps to reproduce**

1. Start a native Runner task and restart the server (K1) so that
startup recovery resumes the run.
2. Send SIGTERM while the resumed run sets up its runnerd backend.
3. See the run fail with `local_runtime_api_listener_unavailable` and
the drain report no suspended runs.

## What Changed

- `server/src/runtime-api.ts`: `resolveLocalRuntimeApiUrl()` throws the
new `LocalRuntimeApiListenerClosedError` when this process had a
listener and closed it (the `listening` flag is false or the `close`
event fired). The error message stays
`local_runtime_api_listener_unavailable`, so the existing classifiers do
not change. A listener that never started still throws the plain error.
- `server/src/services/native-runtime/native-session-executor.ts`: for a
local Runner, the startup failure handler treats
`LocalRuntimeApiListenerClosedError` like a restart detach. It stops
lease renewal, keeps the claim and throws
`NativeControllerDetachedForRestartError`. Heartbeat already keeps such
a run `running`. A remote Runner keeps the same-run bootstrap retry from
#19462, because startup recovery has no process evidence to adopt a
claimed remote startup
(`native-runner-restart-preparation.integration.test.ts` still covers
that path).
- `doc/execution-semantics.md`: describe the new rule.
- Tests: a heartbeat regression that closes the real runtime API
listener before backend setup, then drains and restarts; a unit test for
the closed versus never-started listener; two `vi.mock` factories keep
the real module exports.

## Verification

- Red before the fix: `pnpm exec vitest run
src/__tests__/heartbeat-native-restart-suspension.test.ts -t listener`
failed with `restartSuspendedRunIds: []` and the run `failed`
(`local_runtime_api_listener_unavailable`, `bootstrap_retry`).
- Green after the fix: the same test passes. The drain suspends the run,
the run stays `running` with `awaiting_runner_reattach`, and the next
controller claims it and reaches the backend once.
- `pnpm exec vitest run
src/__tests__/heartbeat-native-restart-suspension.test.ts
src/http/server.test.ts
src/__tests__/server-startup-feedback-export.test.ts
src/services/native-runtime/native-session-executor.test.ts
src/services/native-runtime/native-recovered-owner-followup.test.ts`:
1333 tests pass. One timing test in `native-session-executor.test.ts`
failed once under host load average ~30 and passed alone.
- `pnpm exec tsc --noEmit -p server/tsconfig.json`: pass.
- Live, restart chaos harness, local ACPX Claude (`claude-sonnet-5`),
`--rc06-masked`, this branch at a35ec8b845 (before the remote-scope
commit 5dc63f24fb, which does not change the local path). The original
replay schedule no longer reached the window, because the task now ends
before the second fault. So I moved the faults earlier: K1 at 10 s, then
K2 as soon as the recovered server is ready.
- K1 + K2, 2 runs: both runs PASS with **R1 pass**. Each drain logged
`restartSuspendedRunIds: [<run>]` (before: `[]`). The next boot
classified the run `resume_dead_runner` and the same run completed. No
`local_runtime_api_listener_unavailable` failure.
- K1 + K2 + K2, 2 runs: each drain suspended the run. The fourth boot
blocked the run with `native_restart_recovery_blocked`, because three
restart claims used the three-attempt recovery budget. Retry then
completed the task (R3 pass). That budget count is a separate open item.
This pull request does not change it.

## Risks

- Low. The new path applies only after this process closed its own
listener, which happens only during shutdown. The run then waits for the
drain or the next boot, as for the other restart detaches.
- If shutdown does not reach the drain (for example SIGKILL after the
listener closes), the run keeps its live claim until the claim expires.
Then startup recovery handles it as a hard restart. This is the same as
any run that is running at a hard kill.

## Model Used

- Claude Opus 5.5 (`claude-opus-5-5`), Anthropic, through Claude Code
with tool use (shell, file edits, GitHub CLI). Extended reasoning on.

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have searched GitHub for duplicate or related PRs and linked
them above
- [x] I have either (a) linked existing issues with `Fixes: #` / `Closes
#` / `Refs #` OR (b) described the issue in-PR following the relevant
issue template
- [x] I have not referenced internal/instance-local Paperclip issues or
links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip`
URLs)
- [x] My branch name describes the change (e.g. `docs/...`, `fix/...`)
and contains no internal Paperclip ticket id or instance-derived details
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [x] All Paperclip CI gates are green
- [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups
- [x] I will address all Greptile and reviewer comments before
requesting merge

🤖 Generated with [Claude Code](https://claude.com/claude-code)

---------

Co-authored-by: Claude Opus 5.5 <noreply@anthropic.com>
2026-11-06 15:10:44 -06:00
DottaandClaude Opus 5.5 dc1adb7209 fix(tasks): advertise a native resume only while the scheduler would claim it (#19523)
## Thinking Path

> - Paperclip is the open source app people use to manage AI agents for
work
> - When a native run cannot reattach to its provider after a
control-plane restart, the native coordinator resumes the same run by
itself after about 30 seconds, up to three attempts
> - The run projection shows this correctly as "Retry scheduled" with
only `inspect_run` permitted
> - The task interruption shown on the issue read only system-recovery
evidence and `scheduledRetryAt`. It never read the coordinator's
`nextAttemptAt`, so it showed `state: failed, canRetry: true` and
offered a manual Retry while the automatic resume was still pending
> - The two surfaces disagree, and a user click can race the automatic
resume. That is one way a Retry gets parked behind "execution checks"
> - #19503 made the task interruption read the coordinator's pending
resume time. Review found that the coordinator also pushes that time
forward while it defers an ineligible candidate, so a reassigned or
blocked task could hide Retry for good
> - This pull request advertises the resume only while the scheduler's
synchronous admission checks pass
> - The benefit is one consistent story: while the automatic resume is
pending, the task shows it with its time and no competing Retry. If
recovery ends, exactly one Retry returns

## Linked Issues or Issue Description

Follow-up to #19503. Refs #19487, #19497.

**What happened?**
A native run failed with `native_session_interrupted` after a restart.
Its finalization row had `phase: retryable_failure` and `nextAttemptAt`
30 seconds later. The run projection said "Retry scheduled". The issue
interruption said `state: failed, canRetry: true, nextRetryAt: null`.

**What did you expect?**
While the automatic resume is pending, the task shows that it is
resuming, with the time, and no Retry. When the resume fails for good or
never runs, exactly one Retry that works on the first click.

**Steps to reproduce**
1. Run a native task and restart the control plane so the native attach
fails.
2. Read `GET /api/issues/:id` while the coordinator's resume is pending.
3. Observe `interruption.canRetry: true` while `execution.phase` is
`retry_scheduled`.

## What Changed

- `task-interruption-presentation.ts`: the pending-resume read now also
requires the task to be in a resumable status, assigned to the run's
agent, not owned by another execution or checkout run, the run's
question not cancelled, and the agent invokable (not paused, terminated
or pending approval). These mirror `readNativeSessionResumptionAgent`.
- `native-session-resumption-statuses.ts`: one shared status set used by
both the scheduler admission and the read model.
- No time cap: provider cooldowns and remote backoff schedules stay
visible as a pending resume.

## Verification

- `task-interruption-query.test.ts` (embedded Postgres): a reassigned
task and a blocked task show one Retry; a paused agent asks to be
resumed; in each case `readNativeSessionResumptionAgent` also refuses
the candidate, so the read model and the scheduler agree. A resume an
hour out (provider cooldown) stays `retry_scheduled` with no Retry. Red
on master for the reassigned case.
- All 57 presentation and query tests pass. Server typecheck passes.

## Risks

- Low risk. Read model only.
- A review-assignment resume (reviewer is not the assignee) shows Retry
instead of the pending resume. That is the safe fallback.
- Deferrals for a pause hold, dependency readiness or a competing run
are not mirrored. Those gates also hold a manual Retry, so no competing
action appears.
- The `POST /issues/:id/retry` endpoint is unchanged.

## Model Used

- Claude Opus 5.5 (`claude-opus-5-5`), Anthropic, via Claude Code with
tool use (shell, file editing, embedded Postgres tests).

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have searched GitHub for duplicate or related PRs and linked
them above
- [x] I have either (a) linked existing issues with `Fixes: #` / `Closes
#` / `Refs #` OR (b) described the issue in-PR following the relevant
issue template
- [x] I have not referenced internal/instance-local Paperclip issues or
links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip`
URLs)
- [x] My branch name describes the change (e.g. `docs/...`, `fix/...`)
and contains no internal Paperclip ticket id or instance-derived details
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [ ] All Paperclip CI gates are green
- [ ] Greptile is 5/5 with no open P2s, recommendations, or follow-ups
- [x] I will address all Greptile and reviewer comments before
requesting merge

🤖 Generated with [Claude Code](https://claude.com/claude-code)

---------

Co-authored-by: Claude Opus 5.5 <noreply@anthropic.com>
2026-11-06 14:38:29 -06:00
DottaandClaude Opus 5.5 8c7e86e73b fix(workspaces): let non-git workspace directories pass close readiness (#19553)
## Thinking Path

> - Paperclip is the open source app people use to manage AI agents for
work
> - Execution workspaces hold the files that agents work in, and a
person can close a workspace when the work ends
> - Before close, Paperclip checks "close readiness" so that it does not
destroy unsaved git work
> - The check assumed that every existing workspace path is a git
repository
> - A shared or `local_fs` workspace can be a plain directory. For that
directory, `git rev-parse` fails, and the check reported "Paperclip
could not verify the workspace git status" as a blocking reason
> - So a person could never close these workspaces
> - This pull request treats a path with no `.git` marker as a workspace
with no git state
> - The benefit is that plain-directory workspaces can close, and real
git errors still block close

## Linked Issues or Issue Description

**What happened?**
`GET /api/execution-workspaces/:id/close-readiness` returned `state:
"blocked"` for a `shared_workspace` with provider `local_fs`. The
workspace directory existed but was not a git repository. The only
blocking reason was "Paperclip could not verify the workspace git
status. Retry before destructive cleanup."

**Steps to reproduce**
1. Create a project workspace and an execution workspace
(`shared_workspace`, `local_fs`) whose `cwd` is a plain directory that
exists.
2. Request close readiness for the execution workspace.
3. See `state: "blocked"` and `isDestructiveCloseAllowed: false`.

**Expected behavior**
The workspace is ready to close. It has no git state to lose.

## What Changed

- `inspectGitCloseReadiness` in
`server/src/services/execution-workspaces.ts`: when `git rev-parse
--show-toplevel` fails, the provider is not `git_worktree`, and no
`.git` entry exists on the path or on an ancestor, return `git: null`
with `statusInspectionSucceeded: true`.
- Added `hasGitMarkerInPathOrAncestors`. The check uses the filesystem,
not git error text, so it does not depend on the git locale. It uses
`lstat`, so a dangling `.git` symlink still counts as a marker. Any
error other than `ENOENT` counts as a possible marker, so the check
fails closed.
- For a plain directory, the result is a git readiness object with
`repoRoot: null`, the same shape as the missing-path case.
`createdByRuntime` stays on it, so close readiness still plans
`remove_local_directory` for a runtime-created directory.
- Added two regression tests in
`server/src/__tests__/execution-workspaces-service.test.ts`:
- A plain directory is `ready_with_warnings` with `git: null` and no
blocking reasons. This test failed before the fix (`state: "blocked"`).
- A directory with a broken `.git` pointer is still `blocked` with the
git-status reason.
- A directory with a dangling `.git` symlink is still `blocked`. This
test failed before the second commit.
- A runtime-created plain directory plans `remove_local_directory`. This
test failed before the second commit.
- A plain directory nested under an ancestor with an unreadable `.git`
marker is still `blocked`. This test covers the ancestor walk.

## Verification

- Red/green: the new non-git test failed on `master` (`state:
"blocked"`) and passes with the fix. The broken-git test passes on both.
- `cd server && npx vitest run
src/__tests__/execution-workspaces-service.test.ts
src/__tests__/execution-workspaces-routes.test.ts`: 2 files, 101 tests
pass. The five close-readiness tests also pass after the third commit.
- `pnpm verify` selected 2,223 of 2,991 test files because this service
has many importers. I did not run that near-full suite locally. Required
CI supplies that coverage.
- `tsc -p server/tsconfig.json` shows no errors in the changed files.

## Risks

- Low risk. The change only affects paths where git inspection already
failed.
- With `git: null` removed, the result uses the same `repoRoot: null`
shape as a missing path. Existing code already handles that shape.
- `git_worktree` workspaces still fail closed. A real repository that
git cannot read (corrupt, missing git dir, ownership refusal) still has
a `.git` marker, so it still blocks.
- The terminal-workspace sweep also uses this inspection. With no repo
root there is no HEAD SHA, so delivery cannot be "merged", and the sweep
still skips these workspaces. Only an explicit close by a person
proceeds.
- A `.git` on an ancestor across a filesystem boundary makes git report
"not a repository" while the marker check finds it. That case stays
blocked, which is the safe result.

## Model Used

- Anthropic Claude Opus 5.5 (`claude-opus-5-5`) in Claude Code, with
tool use (shell, file edit, test runs).

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have searched GitHub for duplicate or related PRs and linked
them above
- [x] I have either (a) linked existing issues with `Fixes: #` / `Closes
#` / `Refs #` OR (b) described the issue in-PR following the relevant
issue template
- [x] I have not referenced internal/instance-local Paperclip issues or
links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip`
URLs)
- [x] My branch name describes the change (e.g. `docs/...`, `fix/...`)
and contains no internal Paperclip ticket id or instance-derived details
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [ ] All Paperclip CI gates are green
- [ ] Greptile is 5/5 with no open P2s, recommendations, or follow-ups
- [x] I will address all Greptile and reviewer comments before
requesting merge

🤖 Generated with [Claude Code](https://claude.com/claude-code)

---------

Co-authored-by: Claude Opus 5.5 <noreply@anthropic.com>
2026-11-06 14:33:09 -06:00
DottaandClaude Opus 5.5 4938a930d6 fix(budgets): stop pending or restart-lost accounting from hard-stopping companies (#19497)
## Thinking Path

> - Paperclip is the open source app people use to manage AI agents for
work
> - Budget admission and run accounting decide whether any task in a
company may start
> - A control-plane restart that kills a provider turn mid-flight can
lose that turn's final usage receipt. ACPX Claude reports usage only at
turn end, so the receipt never becomes complete
> - Accounting kept such a run "awaiting receipt" forever. Every later
admission in the company then refused with "completed runs await
accounting", and the budget evaluator opened a hard-stop incident that
paused the company. No product action could clear it: raising the budget
refuses while runs await accounting, accounting retry finds no new data,
and allowing unpriced usage does not apply to pending runs
> - Restart chaos waves showed this as a dead task Retry, a new task
blocked as "over budget" at 22 of 500 cents, and a hard stop that
cancelled queued Retries and an unrelated running task
> - This pull request closes the debt from evidence: once native
recovery reaches terminal failure and the provider stop is verified, the
known part settles as an unpriced charge. Until then the run holds new
work as recovering accounting, without a hard stop
> - The benefit is that a restart no longer bricks a company with a hard
budget. The operator's unpriced-usage policy decides admission, and
unknown spend still never shows as zero cost

## Linked Issues or Issue Description

Refs #19399, #19426, #19431 (earlier restart Retry fixes; this is the
budget layer under the same journey).

**What happened?**
After a control-plane SIGKILL during an ACPX Claude turn, the killed run
ended `native_provider_terminal_failed` with
`usage_json.accountingReceiptReady = false` and `cost_accounting_pending
= true`. It stayed that way for good. The task Retry was accepted but
parked with `budget.blocked` ("Company cannot start work while completed
runs await accounting"), which the UI showed as "Retry is waiting for
execution checks". A new Codex task was escalated to `blocked` with "the
original recovery target is over budget" while the company had spent 22
of 500 cents. After the next restart the budget evaluator opened a
hard-stop incident (`amount_observed` 22.08 < 500), paused the company
and cancelled both queued Retries.

**What did you expect?**
A restart should not stop the company. Unknown usage from a stopped
provider should become an honest, operator-governed state, and Retry
should start a run.

**Steps to reproduce**
1. Give a company a hard-stop budget.
2. Start an ACPX Claude task and SIGKILL the control plane mid-turn, so
the resumed turn fails.
3. Observe the run stay `cost_accounting_pending` with an incomplete
receipt, and every new admission refuse.

## What Changed

- `budgets.ts`: completed runs that await accounting now hold new work
only. They no longer open a hard-stop incident, pause the company, place
an agent budget hold, or deliver Stop to running work. Only spend at the
limit, or unpriced usage under a blocking policy, does that. Chaos wave
A and a pre-restart lifecycle cell showed the wedge: a run that had just
succeeded stayed terminal for about 100 ms before its charge committed,
the evaluator paused the company in that gap, and the Stop it delivered
left a cancelled run whose receipt never closed.
- `run-cost-accounting.ts`: a failed native run is a closed receipt
source only with positive stop evidence: its finalization is
`terminal_failure` with no result (not a finalization-deadline failure),
it no longer records a process identity, and its latest server-authored
process event is `native.local_process_stopped`. One SQL predicate
serves the reconciler scan and settlement. Accounting now settles its
known part as an `unpriced` charge instead of waiting forever. The
background reconciler selects these runs. The reservation settles. Other
incomplete receipts stay pending as before. A cancelled run keeps its
existing accounting drain, so Stop recovery can still deliver its final
receipt.
- `native-local-process-stop.ts` and its transactional callers:
releasing a verified local or remote process stop wakes the accounting
worker, so the closed debt settles promptly.
- `usage-receipts.ts`: a charge settled without its receipt is marked
`accountingReceiptUnavailable`. A later complete receipt that carries
its own price (including a rate-card price) corrects it. A receipt with
no own price and unchanged usage does not reopen the hold.
- `budget-exposure.ts`: the blocking unpriced-usage policy no longer
counts a charge settled from a lost receipt with no observed usage. That
is unknown, not "usage with no reliable price". Complete receipts that
report no tokens (for example Cursor Cloud) still count. A live wave
under the default policy hard-stopped its company at 0 of 500 cents on
one such charge.
- `budget-exposure.ts`: a terminal-failure native run with an
incomplete, not capture-failed receipt counts as recovering accounting.
Admission holds new work ("New work must wait while a native run
recovers its unfinished accounting") without a hard-stop incident, a
company pause or cancellation of running work.
- `recovery/service.ts`: the stranded-work comment names the actual
budget gate instead of always saying "over budget".
- `task-interruption-presentation.ts`: a Retry parked by
`budget.blocked` says it waits for the budget, not for "execution
checks".
- `doc/SPEC-implementation.md`: documents the closed-receipt contract
next to the existing incomplete-receipt rule.

## Verification

- New embedded-Postgres suite
`server/src/__tests__/closed-native-receipt-accounting.test.ts`, built
from the persisted shape of the killed run:
- Red before the fix: the run stayed pending, `reconcileRunCosts`
accounted 0, and admission refused with "completed runs await
accounting".
- Debt stays pending with no verified stop event, with a
finalization-deadline failure, with a recorded process identity, and
while the coordinator can still produce a result.
- Under a blocking policy, a lost receipt with no usage does not
hard-stop; one with tokens still blocks. A run with a still-recorded
process identity paused the company with a hard-stop incident.
- Green after: the stopped run settles as one `unpriced` charge with the
reservation settled; admission is clear under an `allow` policy and
names "no reliable price" under `block`; a run with a recorded process
identity or a non-terminal coordinator stays pending; the closing window
holds admission without an incident or pause; a final receipt that
arrives later still enters late-receipt reconciliation.
- Pending accounting from a run that just finished holds admission with
no incident, no pause, no enforcement version bump, and an unrelated
running run stays running. Red before the `budgets.ts` change: the
company was paused.
- A later priced receipt corrects the unavailable charge to its price;
an unpriced one leaves it settled.
- `task-interruption-presentation.test.ts`: the `budget.blocked` Retry
wait message.
- `budget-enforcement-scoping.test.ts`: the accounting-hold release
cases now assert that pending accounting places no budget hold and that
admission clears after settlement.
- Existing suites pass locally: all budget suites (control publication,
enforcement scoping, enforcement worker, evaluation work, live attempts,
history, service, live usage, budget cancellation),
native-stop-accounting, explicit-native-continuation,
native-case-handoff, cost-data-quality, heartbeat-cost-accounting,
run-cost-accounting, native-usage-delivery. Server typecheck passes.
- Runner e2e cell
`lifecycle-baseline.runner-codex.local.lifecycle-dependency-restart-neutral`,
which failed on master with a false agent budget hold before any
restart, passes on this branch.
- Live restart-chaos wave (local runner, K1 SIGKILL, codex + 2× ACPX
Claude + OpenCode, 4 restarts, company policy `unpricedUsagePolicy:
allow`) with the accounting fix: every killed run settled (no
`cost_accounting_pending` left), the company stayed active, the OpenCode
Retry completed the task on the first click and the Codex Retry finished
its task. That wave also exposed a 1-second false hard stop in the
closing window (observed 0 of 500 cents) that cancelled the running
OpenCode turn; the `budget-exposure.ts` change fixes it and has its own
red/green test.
- Confirming live wave with both commits, same plan (2× ACPX Claude,
OpenCode, Codex; 4 K1 restarts): both Claude tasks passed R3 (one Retry
click started a run that completed the task), OpenCode passed R1
(continued by itself), and the Codex Retry completed its task. Zero
budget incidents, zero cancelled runs, zero runs left pending
accounting, company active; three killed runs recorded as `unpriced`
charges. The only open signature is an unrelated workspace-durability
check (`R2:pre_fault_files_lost` on the Codex long-bench task).

## Risks

- Behavior change: a stopped native run's lost receipt now becomes an
`unpriced` ledger charge with its known usage. If that usage has tokens,
the default `block` policy still stops new work with "recorded usage has
no reliable price". If it has none, the charge is visible in Costs but
does not stop the company. Other unpriced charges keep their existing
effect. Unknown spend is never recorded as a priced receipt. Budget
enforcement stays best effort, as the spec says; killed OpenCode and
Codex requests already lose their in-flight usage.
- Remote runs and runs without a verified local stop keep their debt
pending (an admission hold only, no hard stop).
- Contract change: pending accounting no longer pauses a scope or stops
running work. New work still waits with "completed runs await
accounting". A scope's real hard stop (spend at the limit, or blocked
unpriced usage) is unchanged.
- If a provider stop can never be verified, the run stays "recovering
accounting": new work waits without a hard-stop incident. Before, the
same state paused the company. The hold is visible in admission errors
and Costs.
- A receipt that arrives after settlement posts a late correction. The
original unpriced charge stays in the ledger.
- No schema or migration change.

## Model Used

- Claude Opus 5.5 (`claude-opus-5-5`), Anthropic, via Claude Code with
tool use (shell, file editing, embedded Postgres tests, live
restart-chaos harness).

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have searched GitHub for duplicate or related PRs and linked
them above
- [x] I have either (a) linked existing issues with `Fixes: #` / `Closes
#` / `Refs #` OR (b) described the issue in-PR following the relevant
issue template
- [x] I have not referenced internal/instance-local Paperclip issues or
links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip`
URLs)
- [x] My branch name describes the change (e.g. `docs/...`, `fix/...`)
and contains no internal Paperclip ticket id or instance-derived details
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [ ] All Paperclip CI gates are green
- [ ] Greptile is 5/5 with no open P2s, recommendations, or follow-ups
- [x] I will address all Greptile and reviewer comments before
requesting merge

🤖 Generated with [Claude Code](https://claude.com/claude-code)

---------

Co-authored-by: Claude Opus 5.5 <noreply@anthropic.com>
2026-11-06 14:27:51 -06:00
DottaandPaperclip 0b48bc7ac5 test(connections): isolate scheduled GitHub history scans (#19541)
## Thinking Path

> - Paperclip lets people manage AI agents and their service
connections.
> - Connection identity reads must use the authenticated caller's
current account grants.
> - This integration suite runs the real HTTP routes and bearer
authentication against provider fixtures.
> - An earlier GitHub App fixture stays active after its test ends.
> - Its history worker can run 60 seconds later against the next test's
shared provider handler.
> - This pull request keeps that unrelated worker inactive in this
suite.
> - The identity test keeps its original provider-count and
authorization assertions.

## Linked Issues or Issue Description

**What happened?**

The Anthropic identity integration test reported three provider calls
instead of two. The denied request returned `connection_unavailable`
correctly. A controlled reproduction traced the third call to GitHub's
`/app/hook/config` from an earlier test's webhook recovery worker.

**Expected behavior**

The suite must measure requests from the operation under test.
Foreign-company, unknown-grant, and revoked-grant requests must not
contact the identity provider.

**Steps to reproduce**

Run the GitHub App import fixture before the identity test. Initialize
the saved GitHub recovery epoch. Advance only the fixture Date by 60,001
ms, then run the actual current recovery check after the two authorized
identity reads. The original final count assertion fails with three
calls. The extra call's stack runs through `readGitHubAppWebhookConfig`,
`recoverGitHubWebhookEndpoint`, and the recovery schedule's `check`.

Related implementation: #17666. No duplicate fixture repair was found.

## What Changed

- Keep automatic GitHub webhook history work inactive in this
connection-management test suite.
- Keep real connection setup, HTTP routes, database state, agent API
keys, JWT authentication, and all existing identity assertions.
- Leave production registration and the dedicated chat-channel recovery
tests unchanged.

## Verification

- Exact baseline `5d25117ffad69a93fb92026950b9acd9cec08f69`: the
unchanged focused identity test passed.
- Controlled red on that baseline: the original final
`expect(calls).toBe(2)` failed with three. The third URL was
`https://api.github.com/app/hook/config`. The revoked identity response
stayed unavailable.
- Local provider traffic uses fixture responses. No real provider
credentials or requests were used.
- Full connection-management suite: **90/90 passed** on the exact
release baseline plus this fixture fix (commit `e33c091438`). Command
from `server`: `../node_modules/.bin/vitest run --config
vitest.config.ts --fsModuleCache
src/__tests__/connection-management.integration.test.ts`.
- Rebased onto current master. A fresh GitHub-import plus identity pair
passed **2/2** on final head `95ed6147920e48128892744e1a4f220373f7da5b`
after removal of the added comments required by review. Greptile
reviewed that exact head at **5/5**. The addressed comment thread is
resolved. Required CI remains pending.

Final reviewed head: `95ed6147920e48128892744e1a4f220373f7da5b`.
[Required
CI](https://github.com/paperclipai/paperclip/actions/runs/42272042111)
passed (54 successful checks, three expected skips and the completed
neutral Paperclip Review check; none pending or failed). Greptile and
Paperclip Review both rated the change 5/5 with no remaining findings.
The addressed review thread is resolved. The first attempt's canary
runner communication loss and unrelated cold-import timeout are retained
as failed evidence; the unchanged cold-import suite passed 4/4 locally,
and only failed CI jobs were rerun successfully.

## Risks

Low risk. This changes test isolation only. The connection-management
suite no longer runs unrelated GitHub history scans. Dedicated
chat-channel integration tests still cover those scans. No authorization
check, assertion, deadline, or production behavior changes.

## Model Used

OpenAI GPT-6 family via Codex, with coding and tool use. The exact model
ID and context window are unavailable in this session's metadata.

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have searched GitHub for duplicate or related PRs and linked
them above
- [x] I have either (a) linked existing issues with `Fixes: #` / `Closes
#` / `Refs #` OR (b) described the issue in-PR following the relevant
issue template
- [x] I have not referenced internal/instance-local Paperclip issues or
links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip`
URLs)
- [x] My branch name describes the change (e.g. `docs/...`, `fix/...`)
and contains no internal Paperclip ticket id or instance-derived details
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [x] All Paperclip CI gates are green
- [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups
- [x] I will address all Greptile and reviewer comments before
requesting merge

---------

Co-authored-by: Paperclip <noreply@paperclip.ing>
2026-11-06 14:19:17 -06:00
DottaandClaude Opus 5.5 5a5bfe689f fix(heartbeat): finalize an accepted native result after a graceful shutdown (#19591)
## Thinking Path

> - Paperclip is the open source app people use to manage AI agents for
work
> - Native runner runs go through a durable coordinator row
(`native_run_finalizations`) that holds the controller's execution
lease, the accepted result, and the finalization phase
> - A graceful server shutdown (SIGTERM) drains running native runs: it
detaches the executor and hands the run to the next server boot
> - When SIGTERM lands after `run.result.accepted` / `run.terminal` but
before finalization, the drain did not release the execution lease,
because it only updated coordinator rows without a result
> - Startup restart recovery skips accepted results, and both the
finalization reconciler and the orphan reaper wait for an unexpired
coordinator lease (20 minutes for a local run). The run stayed `running`
and the task stayed `in_progress` with no Retry
> - This pull request makes the drain release the execution lease of an
accepted result too, so the next boot finalizes the durable result
> - The benefit is that a completed task finishes after a restart
instead of stalling silently

## Linked Issues or Issue Description

Refs #19525, #19530, #19513

**What happened?**
A restart-chaos wave sent SIGTERM to the server 0.75 s after a native
OpenCode run emitted `run.terminal` (result accepted, `runTerminalState:
succeeded`). The graceful drain listed the run in
`restartSuspendedRunIds`. On the next boot, startup recovery claimed
only another run. The accepted run stayed `running` for more than 10
minutes. Its task stayed `in_progress` with
`interruption.state=working`, and no Retry appeared.

**Expected behavior**
After a restart, a run whose result was accepted and whose terminal
state is known is finalized as succeeded, and its task is completed. It
must never stay silently `running`.

**Root cause**
`drainRunningRunsForShutdown`
(`server/src/services/heartbeat/recovery.ts`) updated the coordinator
only `where result_id is null`. For an accepted result, the update did
nothing, so the dead controller's execution lease
(`NATIVE_SESSION_EXECUTION_LEASE_TTL_MS`, 20 min) stayed valid. The
detached executor does not finalize (by design, it hands off to the next
controller). Then:
- `claimNativeRestartRecoveries` only claims rows with `result_id is
null`.
- `reconcileNativeFinalizations` only selects rows whose lease is null
or expired.
- The orphan reaper skips a native run with pending workspace
finalization or an unexpired controller lease, and defers to the lease
deadline. The 5-minute stale threshold is not involved.

**Steps to reproduce**
See the new regression test: accept a result through
`PaperclipControlPlanePort.completeRun` under a held 20-minute execution
lease, run the SIGTERM drain, then run startup recovery on a new
heartbeat service.

## What Changed

- `drainRunningRunsForShutdown` now releases the coordinator execution
lease (`leaseExpiresAt = now`) for an accepted result as well. It keeps
`recoveryState` unchanged for an accepted result, because the run needs
finalization, not a runner reattach. Rows without a result keep the old
behavior (`awaiting_runner_reattach`).
- A `native-finalizer:` lease on an accepted result is kept. That lease
belongs to a finalization that is in progress in the draining process,
and the shutdown waits for it.
- The drain event for an accepted result now says that the result was
released for finalization (`runnerDisposition:
awaiting_result_finalization`).
- New regression tests in
`server/src/__tests__/heartbeat-native-restart-suspension.test.ts`:
- An accepted terminal result under a held execution lease, then SIGTERM
drain, then next-boot recovery: the run becomes `succeeded`, the
coordinator becomes `committed`, the task becomes `done`, there is one
result row and one run, and no provider turn starts.
  - A `native-finalizer:` lease survives the drain unchanged.

## Verification

- Red before the fix: `cd server && pnpm exec vitest run
src/__tests__/heartbeat-native-restart-suspension.test.ts -t "accepted
terminal"` failed with `{ status: 'running', phase:
'workspace_finalizing' }` instead of `{ status: 'succeeded', phase:
'committed' }`.
- Green after the fix: the same file passes 5/5.
- Related suites pass: `src/services/heartbeat/recovery.test.ts`,
`src/services/legacy-controller-lease.test.ts`,
`src/services/native-runtime/native-runner-restart-recovery.integration.test.ts`
(80 passed, 14 skipped), and
`src/__tests__/heartbeat-process-recovery.test.ts` except one case.
- The one failing case in `heartbeat-process-recovery.test.ts`
("dispatches interrupted CLI input and cleans up early fixture exits
(true)") also fails on unchanged `origin/master`. It is not related to
this change.
- `server` typecheck (`tsc --noEmit`) passes.
- Restart-chaos replay of the original cell: in progress. Results follow
in a PR comment.

## Risks

- Low to medium. The change only affects the graceful SIGTERM drain of
native runs owned by this boot.
- A rolling deploy can overlap the old and new servers. The old process
detaches the executor before it releases the lease, so it does not
finalize the result. A finalizer that already started keeps its
`native-finalizer:` lease, so the new server cannot finalize the same
result at the same time.
- If a `native-finalizer:` lease is in progress and the process exits
before it finishes, that run still waits for the 5-minute finalizer
lease. This was already the behavior and is out of scope.
- No schema, API, or UI change.

## Model Used

- Claude Opus 5.5 (`claude-opus-5-5`), Anthropic, used through Claude
Code with tool use (shell, file edit, test runs). Extended reasoning was
used.

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have searched GitHub for duplicate or related PRs and linked
them above
- [x] I have either (a) linked existing issues with `Fixes: #` / `Closes
#` / `Refs #` OR (b) described the issue in-PR following the relevant
issue template
- [x] I have not referenced internal/instance-local Paperclip issues or
links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip`
URLs)
- [x] My branch name describes the change (e.g. `docs/...`, `fix/...`)
and contains no internal Paperclip ticket id or instance-derived details
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [x] All Paperclip CI gates are green
- [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups
- [x] I will address all Greptile and reviewer comments before
requesting merge

🤖 Generated with [Claude Code](https://claude.com/claude-code)

---------

Co-authored-by: Claude Opus 5.5 <noreply@anthropic.com>
2026-11-06 14:11:34 -06:00
DottaandPaperclip 124b2cd0ad fix(server): certify background deadlines for idle tenants (#19001)
## Thinking Path

> - Paperclip is the open source app people use to manage AI agents for
work.
> - Background services own future checks, retries, and recovery work.
> - An idle tenant can stop only when a durable wake covers its
remaining duties.
> - The current alarm catalog covers several domains but leaves these
owners blocked.
> - A saved future timestamp alone cannot prove that reconstruction or
admitted work has settled.
> - This pull request binds durable domain snapshots to the actual
registered worker revisions.
> - The tenant can hand off supported future duties and retain all
checks for uncertain or active work.

## Linked Issues or Issue Description

No matching public issue was found. Related work: [domain deadline
handoff #18656](https://github.com/paperclipai/paperclip/pull/18656),
[owned blocker diagnostics
#18632](https://github.com/paperclipai/paperclip/pull/18632), and
[completed history proof
#18646](https://github.com/paperclipai/paperclip/pull/18646). The
separate [native idle-session change
#18988](https://github.com/paperclipai/paperclip/pull/18988) covers
runtime retirement. [Far-future retry re-probes
#13534](https://github.com/paperclipai/paperclip/pull/13534) changes
recovery responsiveness after an upstream success; this change preserves
existing retry decisions.

**What happened?**

Future status-card, external-object, skill-sync, watchdog, retry, and
quota duties lacked complete owner-bound coverage in the idle deadline
proof. A completed quota task could also retain its monitor policy and
timestamp and remain blocked after the scheduler had disarmed it.

**Expected behavior**

A settled registered owner can hand off its exact supported future
deadline. Active work, dirty reconstruction, transaction uncertainty,
changed revisions, claims, unknown state, and unsupported duties keep
the tenant awake. Completed history retains its data and stops recurring
work when the owner has no remaining duty.

**Steps to reproduce**

1. Produce a supported future duty through its normal service.
2. Let the registered worker finish reconstruction and admitted work.
3. Request an owned idle report with the negotiated domain deadline
catalog.
4. Check the saved earliest deadline and generation before durable alarm
registration.
5. Stop and reconstruct the worker. Check that ordinary admission and
claims resume useful work once due.
6. Complete a quota task. Keep its saved policy and timestamp. Check
that linked unfinished work still blocks sleep and that settled history
does not.

**Paperclip version or commit**

The owned patch was qualified at
`699c8569fa34338dd75cdc5731381ec1e2efdb45`. Publication head
`491fac368ee72eaac8ae105d53e6bf6b305d8a6a` normally merges actual master
`039e0dad2c51c80251e1302a19c5566e039c357a`. All 43 owned files are
byte-identical. All 29 new upstream paths are preserved. The later
normal current-master integration is
`8c912e1ba4fc66397a7341ade59373af8075068f`, described separately below.

**Deployment mode**

Source checkout with real PostgreSQL 17 and a controlled local Node
process. No deployed alarm, tenant suspension, database suspension, or
fleet result is claimed.

## What Changed

- Add registered-worker reconciliation revisions and invalidate them on
stop.
- Keep status-card, external-object, and skill deadline interpretation
with their owners.
- Reuse the watchdog classifier against the supplied database snapshot.
- Validate the exact saved retry run and paired queued wake.
- Validate legacy quota source bindings and the current assignee or
reviewer policy.
- Preserve common issue scope, dependency, sibling, and state checks for
covered waits.
- Compose normalized owner snapshots within the existing bounded
deadline proof and recheck revisions after inspection.
- Bind actual service and worker instances from server startup. Missing
bindings preserve existing blockers.
- Retain completed quota policy and timestamps while independently
rejecting linked unfinished runs or wakes.
- Block unconsumed budget evaluation inputs through the owning queue
predicate. Accounting policy and settlement stay unchanged.
- Bind completed quota history through fixed-size UUID-array parameters,
preserve exact company/task/source associations, and guard external
references before the run-ID join.
- Batch watchdog subtrees and shared classifier facts without changing
the 64-query or two-second proof budget; preserve exact company pairing
for first-run evidence.
- Extend production-path regression controls and document supported
coverage and limits.

## Verification

Current integration head: `688abc6cac6016b9fb50e5832f81e2975ed5d49f`.
Fresh exact-head checks completed with **58 successes, three intentional
skips and one neutral review**, including aggregate `ci / verify`. The
complete current Greptile review is **5/5**. The complete current
Ponytail verdict is **Ship (4/5)**, with only optional cleanup of an
unused MCP proof input; both prior correctness findings are resolved.
All review threads and nested pages were inspected. The normal master
merges preserve the registered retry deadline owner and current startup
completion log after the same readiness await. The earlier focused
evidence below remains tied to its tested source revisions.


Current-master integration `8c912e1ba4fc66397a7341ade59373af8075068f`:

- Normally merge actual master
`46fb933b0155d183ce64a8bdc4950d1b58c926f6`. Every nonoverlapping tree
blob retains its owning parent across 14,044 paths. All 42 owner-only
files and 15 critical binding/proof/readiness files remain
byte-identical. Three automatic overlaps preserve the existing watchdog
binding, conservative unavailable-reader fallback and optional actual
owner arguments. The two scoped-deadline conflicts retain the entire
upstream resource-reservation/mid-pass admission/abort algorithm inside
the existing reconciliation revision/running/failure fence, with both
parent test sets.
- Actual TypeScript 7.0.2 server noEmit passed in 9.434 seconds, normal
source declaration layers in 12.102 seconds, and four selected
test/helper/config layers extending the actual CI configuration in 3.167
seconds. No compiler option weakening, heap override, donor declarations
or SDK replacement stub.
- Focused PG0 controls passed: 102 scheduler/proof/owner controls in
16.451 seconds, including all 21 scoped-deadline cases; 121 startup
controls; and all 107 unchanged instance-settings route cases in 6.456
seconds. The latter first hit a local prewire-guard
listener-registration race. Only the ignored guard was corrected to
register the same actual OS-bound server port immediately after native
listen returns. Closed, unknown, foreign, offhost and PG destinations
remain blocked. Original failure evidence is retained; product code and
assertions were unchanged.
- The exact current UI policy command now reports zero findings (0.362
seconds); its seven scanner controls pass. The earlier dependent PR used
an old scanner/source baseline under a newly enforcing trusted workflow
and reported 397 findings. Carrying the genuine current master resolves
that mismatch without editing unrelated UI sites or relaxing the gate.
- Every meaningful worker checked its executing PID/thread/preload hash
and matching receipt. PG0 controls opened no PostgreSQL sockets; all
owned processes exited. Original dependency-cache/DNS, ignored-harness
syntax/type and guard failures remain separate from product results.
- This is fresh semantic and focused runtime qualification, not a local
whole-repository or current-head PostgreSQL acceptance rerun. The
upstream workspace-busy parked-retry/terminal-holder notification path
remains unchanged by this merge and needs its separate current-graph
producer check. Historical six-case/scale results below stay tied to
their measured sources. A matching controlled default-cadence follow-up
is in #19191; no fresh current-head two-cycle or deployed suspension
claim follows from this merge.
- All 59 exact-head check contexts now pass (55 success, one neutral,
three intentional skips), plus the legacy security status. The complete
edited Greptile review is 5/5 for this exact commit, with all
root/nested pages inspected and no unresolved threads. Ponytail stopped
without completing its new turn; it supplied no new verdict or finding.
Prior actual findings remain addressed. Earlier scores/checks below
belong to their explicit earlier commits.


On frozen clean merged source `699c8569fa`:

- Real PostgreSQL acceptance: **6/6 passed**,83.483 seconds wall. Actual
retry producer creates the exact saved run/wake; stopped and
reconstructed owner resumes through current admission, one durable
start, real local process output and normal task completion. Includes
cancellation, drain arrival, retained quota history with queued-run/wake
negatives, watchdog review settlement and budget-input
empty/pending/consumed control using the actual owner.
- Affected coordinator, deadline, scoped-deadline, recovery and
composed-proof controls: **78/78 in five files passed**,32.114 seconds
wall, worker 1/no file parallelism.
- `pnpm exec tsc --noEmit -p server/tsconfig.json`: **passed**,17.467
seconds. Native TypeScript 7.0.2 and Node 24.22.2.
- PostgreSQL tests use one dedicated test database, matching
fixture/admin URLs, pool limit four, one worker, and no embedded
fallback. Every run recorded unchanged source hashes and a clean
checkout.
- The eight-second real-clock retry is a domain execution check. It is
below the Cloud minimum wake lead and is not a positive accepted hosted
sleep cycle.
- The completed quota-history product failure and original
fixture/protocol failures were preserved; the owning-reader fix passed a
real PostgreSQL red/green regression before the fresh merged six-case
pass.
- After runtime completion, the dedicated database had zero other
clients and no owned runtime processes. All three qualification process
PIDs exited. The coordinator independently audits and drops the
database.
- Comment-only cleanup has equal strict TypeScript parser ASTs across 15
files. The final lexical audit finds no added comments relative to
actual master. `git diff --check` passed.
- Earlier retry fixtures omitted responsible-user membership, advanced
JavaScript time past the real PostgreSQL lease clock, or produced stdout
without normal task completion. Corrected fixtures use real membership,
an eight-second real deadline, and ordinary task comment/completion. The
last case exposed legitimate disposition repair rather than duplicate
retry promotion.
- The quota and watchdog controls first ran before admitted work or the
existing 30-second reconstruction duty settled. The stronger tests
require an interim blocked report and then exact settled-owner proof.
Production deadlines were not changed. The separate
completed-quota-history defect was fixed in its reader and verified with
linked unfinished-run and wake controls.
- The status/object and skill owners reviewed the actual final startup,
route and post-backup bindings. Their domain source evidence carries
where token-equivalent. The master coordinator coalescing change was
reviewed separately. Historical domain PostgreSQL results are not
presented as fresh full-suite results on this head.

The later master merge adds retry predecessor cleanup checks under the
existing issue claim lock. The source audit confirms unchanged saved
deadlines and run/wake identities. The three actual retry
lifecycle/cancellation/drain cases passed on the batched candidate with
this parent (31.817 seconds). Those local dependency controls preceded
the current exact-head remote run. Native backup preservation and
TestOps changes from master are retained. No pass is inferred for
changed dependency behavior solely from unchanged owned files.

Review repair published as `643f1e7400`:

- The original reader returned `unknown` after seven actual watchdog
reviews settled across seven companies. The unchanged composed-report
regression passed after batching; the final reader passed in 61.841
seconds, including active queued-work and stopped-owner rejection.
- A separate two-company red/green control rejects terminal-run context
from another company as first-run grace evidence. Shared facts are
serialized once, with per-root IDs and review summaries.
- The affected recovery, proof and diagnostic unit controls passed 47/47
(14.575 seconds). Startup owner-contract fixtures passed 121/121 (10.589
seconds).
- Diagnostic PostgreSQL controls passed7/7 (12.406 seconds), including
the normal budget-input producer and its exact blocker reason. Initial
empty-state setup uses the same cleanup as per-case teardown when a
dedicated test database is reused.
- Actual repository `pnpm exec tsc --noEmit -p server/tsconfig.json`
passed 12.710 seconds with no heap override. Final source has no added
code comments; whitespace checks pass.
- The original query-budget failure, two-company discriminator, initial
cross-suite fixture failure and an interrupted incorrect local-driver
selector are retained separately. The interrupted run is not a pass.
Independent cleanup found zero owned clients or runtime processes.

Quota-scale repair published as `6696a37f8a`:

- The exact 10,000-row completed-history case reproduced
`MAX_PARAMETERS_EXCEEDED`:90,002 bound parameters exceeded the driver's
65,534 limit, and the composed report returned `unknown` despite settled
owners. Original failure and actual driver diagnostics are retained.
- Fixed pending-work queries use three typed UUID-array parameters plus
the result limit, keeping exact company/issue/source tuple bindings. The
primary run-ID column stays uncast; a guarded CASE validates the raw
external reference before conversion. The 10,000-row cap and
64-query/two-second proof budget are unchanged.
- The same 10,000-row composed-report case passed 18.860 seconds, with
unfinished run/wake rejection, malformed-reference safety and
conservative 10,001-row overflow. Its fixture derives retained history
from the actual quota producer and normal task completion, expands valid
persisted issue/source pairs, then starts the actual registered owners.
- The existing actual quota producer case passed 14.187 seconds,
including exact future deadline, retained completion history, unfinished
work, real foreign-company source references and noncanonical/malformed
references.
- Affected owner/proof controls passed 22/22 (26.444 seconds).
Production server noEmit passed 16.039 seconds.
- CI on 643 identified TS7034/TS7005 in the settled-watchdog fixture's
initially untyped collection. It is now explicitly typed. A separate
affected-entry semantic check extending the repository's actual
`server/src/__tests__/tsconfig.json` passed 15.093 seconds: six affected
tests, two owner files, ambient declarations and current imported
source, with unchanged strict/module/lib/path settings. The production
server config excludes that test directory and is not presented as
test-layer proof. No custom suppression or replacement SDK stub was
added.
- All runs were sequential with pool max 4, worker 1,
source/config/command hashes and cleared inherited
provider/LIVE/other-database variables. Cleanup found zero owned
database clients or local runtime processes. At prior head
`6696a37f8a5718cd0f79054969a0084462d41d47`, all required CI gates pass.
The exact-head inventory has 55 successes, one neutral review and three
intentional skips. Greptile is 5/5. The complete latest Ponytail verdict
confirms the quota finding is fixed; its only remaining note is optional
unused MCP proof state, not a behavior defect. All three review threads
are resolved. The earlier 643 result remains historical.

The repository-wide typecheck, tests, build and browser gates passed in
the prior `6696a37f8a5718cd0f79054969a0084462d41d47` CI run. The new
`8c912e1ba4fc66397a7341ade59373af8075068f` full CI also passes. They
were not run as a full local workspace command in the focused PostgreSQL
lease. Local evidence above uses bounded external databases and does not
claim embedded-cluster, live-provider or deployed-alarm qualification.

## Risks

- An unsupported or uncertain owner state must remain blocked. An
optimistic exemption could lose work while compute is stopped.
- Changes during reconstruction or inspection must invalidate the proof.
A memory-only timer is not durable alarm coverage.
- Current authorization, budgets, cancellation, accounting, and resource
ownership still apply on dispatch. The proof does not grant execution
authority.
- The supported writer model uses in-process transaction signals and
startup/resume reconstruction. Independent SQL writers and other
replicas need an explicit wake contract.
- Native, review, coalesced, and taskless retry variants remain
conservative until their owner cases qualify. Reviewer quota and hosted
alarm qualification remain open.
- The shared catalog remains opt-in. Legacy callers and missing owner
bindings retain their old blockers.

## Model Used

OpenAI `gpt-6.1-sol` was the configured model for the delegated service
implementations and reviews. OpenAI Codex, based on GPT-6, performed
managing review and integration. Both used repository tools and code
execution. The exact served backend snapshots and context-window limits
were not exposed.

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have searched GitHub for duplicate or related PRs and linked
them above
- [x] I have either (a) linked existing issues with `Fixes: #` / `Closes
#` / `Refs #` OR (b) described the issue in-PR following the relevant
issue template
- [x] I have not referenced internal/instance-local Paperclip issues or
links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip`
URLs)
- [x] My branch name describes the change and contains no internal
Paperclip ticket id
- [x] I have run tests locally and they pass on the final merged head
- [x] I have added or updated tests where applicable
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [x] All Paperclip CI gates are green — exact current-head run passes
- [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups —
complete current-head review and all paginated threads inspected
- [ ] I will address all Greptile and reviewer comments before
requesting merge

---------

Co-authored-by: Paperclip <noreply@paperclip.ing>
2026-11-06 13:48:55 -06:00
DottaandClaude Opus 5.5 694076245f fix(status-cards): inline query guidance in the compile task instead of an unprovisioned skill (#19554)
## Thinking Path

> - Paperclip is the open source app people use to manage AI agents for
work
> - Status cards let the board watch a slice of company work with a
prose prompt
> - A new card starts a compile task. The summarizer agent compiles the
prompt into search queries and writes the first summary.
> - The compile task told the agent to use the bundled
`status-card-query` skill. Nothing gives that skill to the built-in
Summarizer or to a per-card override agent.
> - The agent saw no assigned skills, got `runner_skill_not_assigned`,
and then searched the filesystem until the run deadline. It never wrote
the card query.
> - This pull request puts the query guidance directly in the compile
task, so the task names only things the run has.
> - The benefit is that any summarizer agent, on any model, can compile
and save the card query without a missing dependency.

## Linked Issues or Issue Description

**What happened?**
Creating a status card with a summarizer on a smaller model (for example
an OpenCode agent on a DeepSeek flash model) never finished. The compile
run reported no assigned skills, then spent its full budget looking for
`status-card-query`. No `PUT /api/status-cards/{id}/query` request was
sent, and the run hit its deadline. Stronger models sometimes worked
around the gap.

**Expected behavior**
The compile task contains everything the run needs. The agent writes the
query, reads the compiled scope, and writes the first summary.

**Steps to reproduce**
1. Enable status cards and configure a summarizer agent that does not
have the `status-card-query` skill (the default Summarizer only installs
`summarize-status`).
2. Create a status card.
3. Watch the compile run: it looks for the skill and does not write the
query.

## What Changed

- `server/src/services/status-cards.ts`: the compile task no longer says
"Use the bundled `status-card-query` skill". It now inlines the query
format (fields, allowed status and priority values from shared
constants, limits), the project and label lookup endpoints, an example
query body, and an explicit `GET /api/status-cards/{id}/dry-run` step
before the summary write.
- The example body uses a `text` fence, so the existing parser still
reads the `json` generation payload.
- New `server/src/__tests__/status-card-compile-prompt.test.ts`: asserts
that the compile task names no skill, contains the full query format and
write-back sequence, has an example that passes
`companySearchQuerySchema`, and keeps a parseable generation payload.

## Verification

- `cd server && npx vitest run
src/__tests__/status-card-compile-prompt.test.ts
src/__tests__/status-cards.test.ts
src/__tests__/status-card-evaluation-work.test.ts`: 3 files, 74 tests
pass.
- `npx tsc --noEmit -p server`: no errors in the changed files.
- `pnpm verify` selected 2224 test files. Most failed in this fresh
worktree because `@paperclipai/plugin-sdk` was not built yet (`Failed to
resolve entry for package "@paperclipai/plugin-sdk"`). After a build of
that package, the status-card files above pass. Required CI supplies the
broad coverage.

## Risks

- Low risk. The change is prompt text only. The write-back routes,
validators, and authorization do not change.
- The compile prompt is longer. The added text is a small, bounded
block.
- The `status-card-query` catalog skill still exists for agents that
author cards. The two texts can drift. The new test pins the prompt
contract.

## Model Used

- Claude Opus 5.5 (`claude-opus-5-5`), via Claude Code with tool use and
code execution.

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have searched GitHub for duplicate or related PRs and linked
them above
- [x] I have either (a) linked existing issues with `Fixes: #` / `Closes
#` / `Refs #` OR (b) described the issue in-PR following the relevant
issue template
- [x] I have not referenced internal/instance-local Paperclip issues or
links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip`
URLs)
- [x] My branch name describes the change (e.g. `docs/...`, `fix/...`)
and contains no internal Paperclip ticket id or instance-derived details
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [x] All Paperclip CI gates are green
- [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups
- [x] I will address all Greptile and reviewer comments before
requesting merge

🤖 Generated with [Claude Code](https://claude.com/claude-code)

---------

Co-authored-by: Claude Opus 5.5 <noreply@anthropic.com>
2026-11-06 13:48:45 -06:00
TonioandPaperclip c650f36007 fix(ui): refine agent profiles, identity editing, and list actions (#19535)
## Thinking Path

> - Paperclip is the open source app people use to manage AI agents for
work.
> - Agent pages expose identity files, reporting relationships, and
runtime settings.
> - Several controls had inconsistent spacing, weak navigation, or
misleading save feedback.
> - Empty task-row detail slots also reduced the title width before
truncation.
> - This pull request fixes those behaviors and aligns the reviewed UI
details.
> - The result is clearer agent editing and more readable task and agent
lists.

## Linked Issues or Issue Description

**What happened?**
Agent headers and file controls had inconsistent layout. The Identity
footer appeared without edits and did not provide clear save
confirmation. File names could wrap or omit the Markdown suffix. Task
titles truncated while empty detail slots occupied the row.

**Expected behavior**
Keep headers and actions aligned. Reveal the Identity footer only for
changes or save feedback. Use valid Markdown file names and actual file
dates. Let titles use available space.

**Steps to reproduce**
1. Open an agent overview, then its Identity tab.
2. Edit, undo, save, copy, and add an instruction file.
3. Resize the file panel and inspect file names and date labels.
4. Hover an agent row and inspect the Chat action and tooltip.
5. Open a task list with no recovery or external details and inspect
title width.

Related: #18716 is the prior UI bundle. #16934 and #14483 concern role
editing; this change does not add a role picker.

## What Changed

- Refine the character header, inline title and name editing, crown
position, runtime shortcut, and Chat/New task actions.
- Align profile metadata and manager selection; hide empty direct
reports.
- Refine Identity panels, Markdown filename validation, file-row hover,
truncation, Paper Mono typography, and copy feedback.
- Add a viewport-bound save footer with dirty, saving, and saved states.
Keep undo/discard separate from successful saves.
- Return recorded creation or modification dates for instruction files.
Reuse the active file transaction for metadata reads to avoid exhausting
the small connection pool.
- Reveal the agent-row Chat icon and label on hover, with a standard
delayed tooltip.
- Collapse empty task-row details so titles can use the available width.

## Verification

- Browser checks covered the local overview and Identity flows, narrow
file panels, successful file creation/update, undo/discard, header
navigation, row hover, tooltip delayed-open state, and full task titles.
- Focused instruction, save-footer, date, font-asset, and task-row tests
passed during development. After review, 55 file/instruction tests
passed, including cold restoration with recorded and unknown dates;
server typecheck and 18 immediate-save response tests also passed.
- Full `pnpm -r typecheck` and `pnpm build` passed after rebase onto
current master. The complete `pnpm test:run` attempt hit a 15-second
timeout in the existing chat Retry HTTP integration test; that case
passed in isolation (1 test passed). A second full attempt hit timeouts
in two other chat integration cases (GitHub webhook draining and
delivery retry budget); both passed in isolation without increasing
timeouts. All 55 remote checks passed on f31405a730, including the full
test matrix, build, typecheck, and final verification gate.
- `pnpm check:token-gates`, `node scripts/check-maps.mjs`, and `git diff
--check` passed on the submitted revision.

## Risks

- File dates are optional. Managed files require recorded dates because
restored projections have synthetic filesystem timestamps. External
files can use modification time; unknown dates are omitted.
- Save-footer timing depends on animation completion; reduced-motion and
failed-save paths have tests.
- Global Paper Mono typography can change text widths. Browser checks
covered the edited surfaces.
- No schema migration or new execution permissions are introduced.

## Model Used

OpenAI Codex, GPT-6, with repository tools, code execution, and browser
verification. The exact serving model ID and context-window size are not
exposed in this session.

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have searched GitHub for duplicate or related PRs and linked
them above
- [x] I have either (a) linked existing issues with `Fixes:` / `Closes:`
/ `Refs:` OR (b) described the issue in-PR following the relevant issue
template
- [x] I have not referenced internal/instance-local Paperclip issues or
links (only public GitHub references)
- [x] My branch name describes the change and contains no internal
Paperclip ticket id or instance-derived details
- [x] I have run the relevant tests locally and they pass; full-run
timeout limitations and successful isolated reruns are documented above
- [x] I have added or updated tests where applicable
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [x] All Paperclip CI gates are green
- [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups
- [x] I will address all Greptile and reviewer comments before
requesting merge

---------

Co-authored-by: Paperclip <noreply@paperclip.ing>
2026-11-06 11:14:56 -08:00
DottaandClaude Opus 5.5 705c3e955d fix(chat): show one onboarding question card when onboarding moves to agent chat (#19512)
## Thinking Path

> - Paperclip is the open source app people use to manage AI agents for
work
> - New users start with an onboarding first task. It has an opening
question card and, after "Interview me", an interview question card.
> - With the coordinator chat enabled, the agent's chat with the user
mirrors pending questions from that agent's direct tasks. The onboarding
task is a direct task.
> - A tester moved onboarding from the task into the chat. The agent
asked its interview in the chat. The chat then showed the chat card and
the mirrored onboarding-task card. Both were answerable.
> - This pull request expires the agent's pending onboarding-task
questions when the agent asks a question in its chat with that user.
> - The benefit is one interview card, answerable once, wherever
onboarding runs.

## Linked Issues or Issue Description

**What happened?**
Onboarding testing on Paperclip Cloud staging (Codex API path). The
steps were: enable the experimental chat and coordinator features, start
the "Interview me" onboarding task, switch to the agent chat, and ask
the chat to run the onboarding there. The chat agent started the
interview, and a duplicate question card appeared.

**Root cause**
`conversationDecisionReceiptsService.listPendingQuestions` projects
pending questions from direct tasks (created by the chat user, assigned
to the chat agent) into the chat. The onboarding first task matches. The
PAP-437 sibling-supersede rule in `issueThreadInteractionService.create`
only works on the same issue, and it is off for chat questions. So the
task's pending interview card and the new chat card both stayed pending
and visible in the chat.

**Expected behavior**
One interview question card in the chat, answerable once.

**Steps to reproduce**
1. Enable the experimental Agent Chat and coordinator features.
2. Create the onboarding first task and choose "Interview me" on its
opening card.
3. Open the chat with the same agent and ask it to run the onboarding
there instead of in the task.
4. The agent asks its interview in the chat. The chat shows two pending
question cards: its own card and the mirrored onboarding-task card.

**Paperclip version or commit**
`master` at 819420a60a (Paperclip Cloud staging build at the time of the
test).

**Deployment mode**
Paperclip Cloud (staging). The same logic runs in self-hosted mode.

## What Changed

- `server/src/services/issue-thread-interactions.ts`: when the chat
agent creates an `ask_user_questions` card in its chat with a user, the
server expires that agent's pending `ask_user_questions` cards on the
onboarding first task that the same user created and assigned to the
agent. The result is the existing `superseded_by_newer_interaction`
shape and points at the chat card. Pending chat publications for those
cards are cancelled and terminal publications are queued, the same as
the existing sibling supersede.
- The rule does not change questions on other direct tasks, handoff
tasks, or other chats. Confirmations and plan approvals on the
onboarding task are not changed.
- `server/src/__tests__/coordinator-handoff.test.ts`: a new red/green
test for the reported flow, and a control test that an ordinary
direct-task question stays pending when the agent asks something else in
chat.
- `server/src/onboarding-assets/first-task/README.md`: one paragraph
that documents the behavior.

## Verification

Red on `master` (819420a60a) with only the new tests added:

```
$ cd server && npx vitest run src/__tests__/coordinator-handoff.test.ts -t "onboarding interview|ordinary direct task"
 × moves a pending onboarding interview into the agent chat instead of showing two question cards
AssertionError: expected [ …(2) ] to deeply equal [ Array(1) ]
  [
    "26b1e6ae-e1e5-4c26-8475-ad7ad93a7754",
+   "2364fd68-a40f-42be-854d-89210bfc5811",
  ]
 ❯ src/__tests__/coordinator-handoff.test.ts:231:53
      Tests  1 failed | 1 passed | 23 skipped (25)
```

The chat showed its own interview card and the mirrored onboarding-task
interview card.

Green after the fix:

```
$ cd server && npx vitest run src/__tests__/coordinator-handoff.test.ts
 Test Files  1 passed (1)
      Tests  25 passed (25)
```

Neighbouring suites:

```
$ npx vitest run src/__tests__/issue-thread-interactions-service.test.ts src/__tests__/issue-onboarding-first-task-routes.test.ts src/__tests__/chat-interaction-publications.test.ts src/__tests__/coordinator-handoff.test.ts
 Test Files  4 passed (4)
      Tests  183 passed (183)
```

`tsc --noEmit -p server` shows no errors in the changed files. Other
errors in that local run come from the unbuilt
`@paperclipai/paperclip-runner` package. CI typecheck covers the full
build.

Not done: a live browser repro. Staging has no Codex company and no
agent chat with this flow. The evidence is the tester's notes and the
service-level test.

## Risks

- If a user ignores the onboarding card and the agent asks an unrelated
question in its chat, the onboarding task's pending question card
expires. The onboarding task stays open, and a message on the task still
wakes the agent. The chat already showed both cards to that user, so
this keeps one live ask from the agent.
- Race: if the onboarding task run posts its interview card after the
chat card, both stay pending. Agent Chat questions are intentionally not
expired by other cards, so this PR does not reverse the rule.
- No schema, API, or UI change.

## Model Used

- Claude Opus 5.5 (`claude-opus-5-5`), Anthropic, via Claude Code with
tool use and code execution.

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have searched GitHub for duplicate or related PRs and linked
them above
- [x] I have either (a) linked existing issues with `Fixes: #` / `Closes
#` / `Refs #` OR (b) described the issue in-PR following the relevant
issue template
- [x] I have not referenced internal/instance-local Paperclip issues or
links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip`
URLs)
- [x] My branch name describes the change (e.g. `docs/...`, `fix/...`)
and contains no internal Paperclip ticket id or instance-derived details
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [ ] All Paperclip CI gates are green
- [ ] Greptile is 5/5 with no open P2s, recommendations, or follow-ups
- [x] I will address all Greptile and reviewer comments before
requesting merge

🤖 Generated with [Claude Code](https://claude.com/claude-code)

---------

Co-authored-by: Claude Opus 5.5 <noreply@anthropic.com>
2026-11-06 13:10:45 -06:00
DottaandClaude Opus 5.5 fca1f1be4f fix(attention): keep replaced confirmations out of Needs you after the newest is settled (#19520)
## Thinking Path

> - Paperclip is the open source app people use to manage AI agents for
work
> - Needs you is the board inbox. It lists the decisions that wait for a
person.
> - Agents often ask for the same confirmation again on one task. Needs
you shows only the newest pending confirmation for each task.
> - When a person approved that newest card (for example in chat), or
the card expired, the older card that it replaced came back into Needs
you.
> - Manual onboarding tests reported this: decision cards that were
already approved in chat still showed in Needs you.
> - This pull request makes the newest answered or expired confirmation
also hide the older pending confirmations on the same task.
> - The benefit is that Needs you does not show stale cards after a
person answers the current one.

## Linked Issues or Issue Description

**What happened?**
A person approved a decision card in chat. Needs you still showed a
decision card for the same task. Expired cards also caused an older card
to show again.

**Steps to reproduce**
1. An agent creates a confirmation on a task. Then it creates a second
confirmation on the same task.
2. Needs you shows only the second card.
3. Approve the second card in chat (or let it expire).
4. The first card now shows in Needs you.

**Expected behavior**
Needs you shows no card for the task, because the newest ask is settled.

**Root cause**
`collapsePendingConfirmationsToNewest` compared only pending rows. Chat
cards use the same `issue_thread_interactions` row and the same accept
service, so there is no duplicate record. The server already drops
answered rows. The problem was the older pending row that the collapse
hid before.

## What Changed

- `server/src/services/attention-source-eligibility.ts`: the collapse
takes the newest settled (accepted, rejected, answered, expired)
ordinary confirmation for each issue. Older pending ordinary
confirmations stay hidden. A new `loadNewestSettledConfirmationAt`
helper reads that value with one grouped query.
- Cancelled and failed replacements do not settle the ask, so the older
card returns (the existing retention test keeps this behavior).
- Tool-action confirmations and quality-review confirmations are
excluded from the settled check. A settled tool action never hides a
different pending tool action.
- `server/src/services/attention.ts` and
`server/src/services/attention-retention.ts` use the new input, so the
feed and the retention worker agree.
- Review follow-up: the summary and task-index payload keeps
`toolAction` and `secretProposal`. A settled card only hides older asks
addressed to the same recipient. Tool actions, secret proposals and app
connections (`connectionAuthorization`) form one governed set. They
match the set the other confirmation readers use. A settled governed
card never settles an ordinary ask, and a pending governed card is never
hidden.
- `server/src/__tests__/attention-service.test.ts`: new tests for
"approved from chat", "rejected from chat", "expired", a re-ask after a
settled card, another recipient, a settled secret proposal, tool actions
in `list()`, and tool actions in `summary()`/`taskIndex()`. The tests
use two agents, because the service already expires a same-agent re-ask
at creation.

## Verification

Red on `master` (819420a60a), before the code change:

```
 RUN  v5.0.3 /Users/dotta/paperclipai/paperclip/.claude/worktrees/fix-n10-stale-needs-you-cards-47c895/server
 ❯ src/__tests__/attention-service.test.ts (36 tests | 2 failed | 34 skipped) 14165ms
   ❯ attention service (36)
     × does not resurface an older confirmation once the newest one is approved from chat  3502ms
     × does not resurface an older confirmation once the newest one is expired  2097ms
⎯⎯⎯⎯⎯⎯⎯ Failed Tests 2 ⎯⎯⎯⎯⎯⎯⎯
 FAIL  src/__tests__/attention-service.test.ts > attention service > does not resurface an older confirmation once the newest one is approved from chat 
AssertionError: expected [ Array(1) ] to deeply equal []
- Expected
+ Received
- []
+ [
+   "a1f2f085-e4b2-42f1-ac3c-71d85f6e164c",
+ ]
 ❯ src/__tests__/attention-service.test.ts:1609:32
    1607|     }
    1608|
    1609|     expect(await pendingIds()).toEqual([]);
       |                                ^
    1610|   });
    1611|
⎯⎯⎯⎯⎯⎯⎯⎯⎯⎯⎯⎯⎯⎯⎯⎯⎯⎯⎯⎯⎯⎯⎯⎯[1/2]⎯
 FAIL  src/__tests__/attention-service.test.ts > attention service > does not resurface an older confirmation once the newest one is expired 
AssertionError: expected [ Array(1) ] to deeply equal []
- Expected
+ Received
- []
+ [
+   "8c8d01ad-1084-47b2-927a-24d18529a9a6",
+ ]
```

Green after the change (same tests):

```
$ npx vitest run src/__tests__/attention-service.test.ts -t "resurface an older confirmation|tool-action approval"
 ✓ does not resurface an older confirmation once the newest one is approved from chat
 ✓ does not resurface an older confirmation once the newest one is expired
 ✓ keeps a pending tool-action approval visible after a newer tool action is settled
```

Review follow-up red (on ebe8e0c0ae, before the follow-up code change):

```
 × keeps a pending tool-action approval in the summary and task index after a newer ordinary confirmation is settled
 × does not let another recipient's settled confirmation hide this recipient's pending one
 × does not let a settled secret proposal hide an older ordinary confirmation
AssertionError: expected [] to include '4c636383-…'
AssertionError: expected [] to deeply equal [ Array(1) ]
```

All three pass after 9245bd7b17.

Second review round red (before a36923c7fc):

```
 × does not let a settled app connection hide an older ordinary confirmation
AssertionError: expected [] to deeply equal [ Array(1) ]
```

It passes after a36923c7fc.

Neighbouring suites (attention-service, attention-retention-work,
issue-review-attention, issue-blocker-attention):

```
      Tests  125 passed (125)
 Test Files  4 passed (4)
```

Staging check (read-only): the ONB staging company had one pending Needs
you item, on a task with no newer card. Staging has no Codex company, so
I could not reproduce the Codex path there.

## Risks

- Low risk. The change is read-only and adds one grouped query when
pending confirmations exist.
- Older ordinary confirmations from the same agent were already expired
at creation. This change affects asks from different agents or users on
the same task.
- The service already expires an older ordinary confirmation from the
same agent at creation. This change affects asks from different agents
or users on the same task.
- Behavior change: an older ordinary confirmation that is still pending
stays out of Needs you after a newer one is answered or expired. It
stays visible in the task thread.
- Not changed: the live-update listener does not match
`issue.interaction.withdrawn` or `issue.interaction_cancelled`. Those
cards can stay in the client cache until the next refetch.

## Model Used

- Anthropic Claude Opus 5.5 (`claude-opus-5-5`) in Claude Code, with
tool use and code execution.

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have searched GitHub for duplicate or related PRs and linked
them above
- [x] I have either (a) linked existing issues with `Fixes: #` / `Closes
#` / `Refs #` OR (b) described the issue in-PR following the relevant
issue template
- [x] I have not referenced internal/instance-local Paperclip issues or
links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip`
URLs)
- [x] My branch name describes the change (e.g. `docs/...`, `fix/...`)
and contains no internal Paperclip ticket id or instance-derived details
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [ ] All Paperclip CI gates are green
- [ ] Greptile is 5/5 with no open P2s, recommendations, or follow-ups
- [x] I will address all Greptile and reviewer comments before
requesting merge

🤖 Generated with [Claude Code](https://claude.com/claude-code)

---------

Co-authored-by: Claude Opus 5.5 <noreply@anthropic.com>
2026-11-06 13:10:26 -06:00
Dotta 65aee998a3 fix(server): settle empty environment cleanup notifications (#19316)
## Thinking Path

> - Paperclip is the open source app people use to manage AI agents for
work.
> - Environment workers retain cleanup duties and retry them safely.
> - A metadata change can notify the worker without adding cleanup debt.
> - The pending-cleanup worker kept a work hold during its thirty-second
spacing window even when its owner reported no debt.
> - Historical cleanup already checks that condition without advancing a
provider sweep.
> - This PR applies the same owner check to pending cleanup and
preserves later notifications.
> - An empty notification can settle while real cleanup and uncertain
work still block sleep.

## Linked Issues or Issue Description

Refs #18646. That change covers empty historical-cleanup notifications.
This follow-up covers the pending-cleanup queue. Related runtime work:
#18988.

A search of open and closed PRs and issues found no duplicate
pending-queue fix. This repairs an existing worker under the roadmap's
Cloud deployment work.

**What happened?**

A normal metadata update on a released lease left one tracked work
intent and a scheduled pass. The actual cleanup deadline was null before
and after the update. The worker kept the hold until its spacing window
ended.

**Expected behavior**

The worker can clear an empty notification through its existing owner
predicate after a normal sweep and deadline read complete. It must
retain new debt, unresolved transactions, failed sweeps, failed reads
and later notifications. Provider sweep spacing and cleanup retry
deadlines must stay unchanged.

**Steps to reproduce**

1. Create and release a fixture cleanup lease through the normal
services.
2. Start the registered worker and confirm that its cleanup deadline is
null.
3. Change the released lease's metadata before the thirty-second spacing
window ends.
4. Run the new test. The original worker keeps an active intent even
though eligibility remains empty.

**Paperclip version or commit**

Candidate: `69aaee95cd73322a37e0270354d4a06bf5512ba7`. It normally
merges actual master `cd3832d2357eab481a861331ba1bc944a0b951f4`. The
focused retry repair follows the original two-file fix. Every other tree
blob still matches that master. The diff has two files.

**Deployment mode**

Source checkout with external PostgreSQL 17 and controlled coordinator
time. No deployed host or database suspension result is claimed.

## What Changed

- Apply the existing cheap deadline check to both registered cleanup
queues during provider spacing.
- Clear only the captured notification generation when the owner returns
no deadline and the latest normal sweep completed successfully.
- Invalidate that coverage before every full sweep. Startup and later
sweep failures keep their existing retry even if a metadata notification
has no database deadline.
- Add real PostgreSQL controls for empty metadata changes, concurrent
debt, unresolved transactions, failed reads through drain/resume, and
unread-spool recovery after startup and later sweep failures.
- Retain the original provider sweep, retry, deferred-buffer, creation,
startup, historical and shutdown controls.

## Verification

**Real PostgreSQL red/green qualification passed.** The original
empty-notification counterfactual failed at active work one, expected
zero, after actual null eligibility reads (16.706s). Review then found a
missing failed-sweep combination. Two additional cases using the real
malformed spool and ordinary metadata notifications reproduced lost
retries on the earlier published head, both at the intended pending
predicate (42.144s). One case fails at startup; the other first
completes a successful sweep, then fails a later sweep. Failed fixtures
and original logs remain retained.

At measured source `1ccd227c51e03ab4306d7cb85cf81efb0e3d3678`, all **29
owner cases passed in 113.061s**, without filters or skips. The tests
repair the actual spool, recover the ordinary cleanup lease, perform
provider cleanup once, preserve the later-sweep backoff, and return to
quiet. Normal migrations used a fresh owned external database; each pool
was capped at four with one worker. The first test-fixture attempt
accidentally replaced the real spool driver; that setup failure is
preserved separately and was corrected before the counterfactual. No
final cleanup result or receipt was seeded.

Run the full owner suite against a fresh, owned external test database
with normal migrations applied:

```sh
pnpm --filter @paperclipai/server exec vitest run src/__tests__/environment-cleanup-work.test.ts --maxWorkers=1 --no-file-parallelism
```

Set `PAPERCLIP_ENVIRONMENT_CLEANUP_TEST_DATABASE_URL` to that fixture.
Local qualification uses one worker and a pool of four.

Current native TypeScript checks passed: normal production declaration
layers (44.127s) and the affected test entry using the repository's
actual CI options and references (3.922s). Own dependency builds passed.
A frozen install first found stale upstream ACPX patch metadata;
normally carrying #19294 corrected the hash references for the same
package version. No lock policy was relaxed.

Full local workspace typecheck, tests and build were not run in this
bounded external-PG lease. Fresh checks on the current head
`69aaee95cd73322a37e0270354d4a06bf5512ba7` completed with **53
successes, one neutral Pony review and two skips**, with no pending or
failed gates. Its [PR
workflow](https://github.com/paperclipai/paperclip/actions/runs/42104787089),
aggregate verification and commitperclip review succeeded. The complete
latest edited Greptile and Pony summaries both gave **5/5**. Both review
threads are resolved, and all root and nested thread pages were
inspected.

The current head only removes four changed code-comment lines to follow
CONTRIBUTING.md. Its emitted JavaScript is byte-identical to the
measured parent `1ccd227c51e03ab4306d7cb85cf81efb0e3d3678`; tests,
configuration and dependencies are unchanged. The local 29-case evidence
therefore carries to this head without a duplicate local run. The remote
results above are fresh for the current head.
On the earlier head, Runner CI failed an omitted-context
checkpoint-settlement case. The fresh Runner job on this head passed
without a rerun. The original failure logs are preserved and its cause
remains unproven; current success is recovery evidence, not a causal
explanation.

The recorded test and migration command PIDs were reaped; an independent
audit verifies zero owned database clients before normal cleanup. Failed
fixtures remain retained. The process audit covers recorded command
PIDs, not an exhaustive history of child processes.

The long quiet assertion uses controlled coordinator time and actual SQL
counters. It does not prove a real twenty-minute quiet window, provider
behavior or deployed suspension.

## Risks

The empty read must not erase a notification that arrives while it runs.
The captured generation and transaction controls preserve that boundary.
An unknown or failed read keeps work pending. Empty deadline rows cannot
cover a failed sweep or an unread local spool; only a successful normal
sweep and deadline read establish that coverage. No cleanup row,
resource claim, provider action, authorization rule, sweep spacing or
retry deadline is removed.

## Model Used

OpenAI `gpt-6.1-sol` produced the delegated regression tests and source
review. OpenAI Codex, based on GPT-6, implemented the small worker
change and managed integration and verification. Both used repository
tools and code execution. Exact served backend revisions and context
limits were not exposed.

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have searched GitHub for duplicate or related PRs and linked
them above
- [x] I have either linked an existing public issue or described the
issue using the issue template
- [x] I have not referenced internal or instance-local Paperclip issues
or links
- [x] My branch name describes the change and contains no internal issue
ID
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [x] I have checked that no documentation change is needed for this
internal worker fix
- [x] I have considered and documented risks
- [x] All Paperclip CI gates are green
- [x] Greptile is 5/5 with no open findings
- [x] I will address all reviewer comments before requesting merge
2026-11-06 13:04:40 -06:00
DottaandClaude Opus 5.5 c6eecac1e0 fix(heartbeat): keep a shutdown-suspended native recovery for the next boot (#19530)
## Thinking Path

> - Paperclip is the open source app people use to manage AI agents for
work
> - The Runner Full-Stack E2E workflow tests the Runner in Daytona
sandboxes from a signed, content-addressed image
> - Every change to an audited Runner input needs a new image before a
Daytona cell can test it
> - The image job took 10 to 16.5 minutes today, and a restart chaos
campaign waits on it after each runner-side fix
> - Measurement shows two serial waits: a full Rust dependency compile
(about 5 of 6.6 minutes) and a 3.5 to 4 minute download of cached base
layers that starts only after the builder stages finish
> - There is also no way to build only the image: every dispatch reaches
a paid gate that the operator must reject
> - This pull request removes both serial waits and adds an `image_only`
dispatch input
> - The benefit is a shorter fix-to-Daytona-test loop, with every image
security check unchanged

## Linked Issues or Issue Description

**What happened?**

The `Publish verified Daytona image` job is on the critical path of the
control-plane restart chaos campaign. Builds today took 16.5 min (run
42240434011), 15 min (42253920727), 10.5 min (42259118276) and 16 min
(42265637650). Run 42264611573 failed: its RunsOn runner lost
communication with GitHub 7.6 minutes into the build step, during the
Rust compile. GitHub has no log for that job.

**Expected behavior**

A Runner source change should not recompile the locked third-party Rust
graph. Cached image layers should download while the builder stages
compile. An operator should be able to publish only the image, without a
paid gate.

**Steps to reproduce**

Read the BuildKit timeline in the logs of job 127970125495 (run
42240434011). See the stage table below.

## What Changed

- `docker/daytona-runner/Dockerfile`: compile the locked Rust dependency
graph in its own layer against placeholder targets. The layer depends
only on `Cargo.toml`, `Cargo.lock` and the crate manifest. The step
deletes the placeholder outputs and fingerprints, so the next step
always compiles the real Runner sources. The final stage still receives
only the stripped executable.
- `docker/daytona-runner/Dockerfile`: move the content-ID /
source-revision check above the two `COPY --from` steps. It does not
depend on either builder stage, so BuildKit now downloads the cached
base and CLI layers in parallel with the compile. Both copies use `COPY
--link`.
- `.github/workflows/runner-full-stack-e2e.yml`: add the boolean
`image_only` dispatch input. `authorize`, `target_lock`, `catalog` and
`daytona_image` run unchanged. Every other campaign job gets `&&
inputs.image_only != true`. `authorize` rejects `image_only` together
with TestOps inputs.
- `tests/runner-e2e/workflow-image-only.test.ts` (new): pin the job
classification, the top-level guard on each campaign job, the guard on
every protected environment, and the TestOps rejection.
- `tests/runner-e2e/README.md`: document the layer layout and the
`image_only` command.

## Verification

Measured on the same RunsOn `m7i-flex.xlarge` (4 vCPU, 16 GiB, native
x64) runner class. "Before" is master job 127970125495 (run
42240434011). "After (cold)" is this branch, job 128077687214 (run
42271236140), with no dependency layer in the registry cache yet. Its
paid gate was rejected.

| Stage | Before | After (cold dependency cache) |
|---|---|---|
| Whole image job | 16.5 min | **11.6 min** |
| Rust dependency graph | 311 s (inside one 399 s step) | 395 s (own
layer; reused from cache after a master build) |
| `paperclip-runner-core` compile | ~87 s | 65 s |
| Cached base and CLI layer download | 236 s, **after** cargo finished |
257 s, **in parallel** with cargo |
| Copy runnerd + provider pack | 20 s + 50 s | 9 s (`--link`) |
| Provider pack stage | 143 s (parallel) | 152 s (parallel) |
| Export + push | 82 s + 10 s | 81 s + 11 s |
| Dependency layer size | n/a | `target` 852 MB + registry 333 MB
(builder stage only) |

With a warm dependency cache, a Runner source change compiles only the
65 s crate step. The critical path then becomes the ~4 min cached-layer
download or the provider pack. The expected job time is about 7 to 8
min. I measure this after merge with an `image_only` dispatch (master
first, to write the cache, then a Rust-only branch change).

Disk: the instance starts with 38.76 GiB free. The dependency layer adds
about 1.2 GB uncompressed to builder storage. The final image does not
change.


- `vitest run tests/runner-e2e/workflow-image-only.test.ts
tests/runner-e2e/workflow-security.test.ts
tests/runner-e2e/daytona-image.test.ts`: the new test and all image
tests pass. Three tests in `workflow-security.test.ts` (`gates every
provider-secret job with stable actor IDs`, `keeps provider credentials
inside explicitly gated paid workflows`, `isolates private archive trust
from workflows that execute target-branch code`) fail on `origin/master`
without this change, because of `chat-catalog-testops-case.yml`. This
pull request does not change them.
- `node --test tests/runner-e2e/product-regression-testops.test.mjs`:
15/15 pass.
- No local Docker build. The Dockerfile is measured with a
branch-targeted CI dispatch whose paid gate was rejected.

## Risks

- The dependency layer keeps the Rust `target` and registry trees in a
builder-stage layer, and default-branch builds export it to the registry
cache. This adds builder disk and cache upload when `Cargo.lock`
changes. The build prints the size (`du -sk target
/usr/local/cargo/registry`).
- The dependency cache helps only after a default-branch build writes
it. Branch builds read it but never write it. This is the existing cache
policy.
- `image_only` changes the workflow, so it works only after merge to
master.
- No check is removed. Lockfile verification, cosign sign and verify,
the anonymous pull check, the provider-pack manifest match, the
default-branch-only cache write and the actor allowlist are unchanged.

## Model Used

- Claude Opus 5.5 (`claude-opus-5-5`), Anthropic, through Claude Code
with tool use (shell, GitHub CLI). Extended reasoning on.

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have searched GitHub for duplicate or related PRs and linked
them above
- [x] I have either (a) linked existing issues with `Fixes: #` / `Closes
#` / `Refs #` OR (b) described the issue in-PR following the relevant
issue template
- [x] I have not referenced internal/instance-local Paperclip issues or
links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip`
URLs)
- [x] My branch name describes the change (e.g. `docs/...`, `fix/...`)
and contains no internal Paperclip ticket id or instance-derived details
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [x] All Paperclip CI gates are green
- [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups
- [x] I will address all Greptile and reviewer comments before
requesting merge

🤖 Generated with [Claude Code](https://claude.com/claude-code)

---------

Co-authored-by: Claude Opus 5.5 <noreply@anthropic.com>
2026-11-06 13:01:16 -06:00
Nicky LeachandClaude Opus 5.5 1206373a95 fix(environments): close Apex findings on managed plugin environments (#19526)
## Thinking Path

> - Paperclip is the open source app people use to manage AI agents for
work
> - A managed instance gets its instance-level environments from the
`PAPERCLIP_MANAGED_CONFIG` document, and #19508 added plugin environment
entries to it
> - Greptile's Apex review of #19508 arrived after it merged, with three
findings
> - A credential inside an array nested in an array passed the secret
check and the response redaction
> - Recovery of an archived environment listened on one worker handle,
which a restart replaces, and its attempts were not tracked through idle
checks and shutdown
> - This pull request closes all three findings
> - The benefit is that credentials never pass the check, an environment
comes back after any worker restart, and shutdown never cuts off a
recovery write

## Linked Issues or Issue Description

Refs #19508 (the Apex findings this pull request fixes)

**Subsystem affected**
Server environments: the managed-config parser, the environment routes'
response floor, the managed environment bootstrap, and the plugin worker
manager.

**Problem or motivation**
Greptile's Apex review of #19508 found three problems. (1)
`findSecretLikeConfigKey` and `redactSecretLikeConfigKeys` skip array
elements that are arrays, so `{"groups":[[{"apiToken":"..."}]]}` passes
the boot check and is echoed to restricted readers. (2) Recovery
subscribes to `ready` on one worker handle. A restart such as a settings
save replaces that handle, so the new worker's `ready` never reaches the
listener, and the environment stays archived. (3) A recovery attempt is
fire-and-forget. The worker manager's work token ends when the worker
replies, but the database write continues, so an idle check or the
database shutdown can overlap it.

**Proposed solution**
Walk arrays at any depth in both functions. Add a manager-wide
`onWorkerReady` subscription and use it for recovery. Run every recovery
attempt through a controller that tracks it as idle work and that
shutdown stops and awaits before the database closes.

**Alternatives considered**
Re-subscribing on each new handle after a restart. That needs a hook in
every restart path. The manager-wide subscription covers all of them in
one place.

**Roadmap alignment**
This only fixes code that #19508 added or touched. It adds no product
surface.

## What Changed

- `server/src/services/managed-config.ts`: `findSecretLikeConfigKey`
walks arrays at any depth (new `findSecretLikeConfigKeyInValue`). This
covers sandbox `config` and plugin `driverConfig`.
- `server/src/routes/environments.ts`: `redactSecretLikeConfigKeys`
walks arrays at any depth (new `redactSecretLikeConfigValue`).
- `server/src/services/plugin-worker-manager.ts`: new optional
`onWorkerReady(listener)` on `PluginWorkerManager`. It fires on every
worker `ready`, including a replacement handle from a restart. A
listener error is logged and does not affect the worker.
- `server/src/services/managed-environments.ts`:
- Sandbox and plugin recovery subscribe through `subscribeWorkerReady`.
It prefers `onWorkerReady` and falls back to the handle when the manager
has no such method.
- New `createManagedEnvironmentRecovery()` controller. Each attempt runs
inside `trackIdleWork` for its whole duration. `stop()` removes every
`ready` subscription, refuses new attempts, and awaits unfinished ones.
- `server/src/index.ts`: creates the controller, passes it to
`applyManagedEnvironments`, and awaits `stop()` during shutdown, after
the delivery workers stop and before the application teardown and
database close.

## Verification

- `cd server && npx vitest run src/__tests__/managed-config.test.ts`: a
secret-like key in an array nested in an array refuses boot, for plugin
`driverConfig` and sandbox `config`.
- `npx vitest run src/__tests__/environment-routes.test.ts`: a
nested-array credential is removed from the response, and other nested
values stay.
- `npx vitest run
src/services/managed-environments-plugin-entries.test.ts`:
- With `onWorkerReady`, recovery never consults the handle. It ignores
another plugin's `ready`, re-ensures on this plugin's `ready`, and then
unsubscribes.
- An attempt counts in `idleWorkSnapshot()` until its ensure settles.
`stop()` unsubscribes, waits for the unfinished attempt, and later
`ready` events start nothing.
- `npx vitest run src/services/managed-environments.test.ts
src/__tests__/managed-plugin-environments.test.ts`: pass.
- `pnpm --filter @paperclipai/server typecheck` passes.
- I did not run the full `pnpm test:run`, `pnpm -r typecheck` or `pnpm
build`. CI covers them.

## Risks

- The redaction now also walks nested arrays in sandbox config
responses. Only credential-shaped keys are removed; other values are
unchanged.
- The boot check now refuses a document that hides a secret-like key in
a nested array. A valid document has no such key.
- `onWorkerReady` is optional, so other `PluginWorkerManager`
implementations and test fakes keep working.
- Shutdown now waits for an unfinished recovery attempt. An attempt is
one worker call plus one short transaction.

> For core feature work, check [`ROADMAP.md`](ROADMAP.md) first and
discuss it in `#dev` before opening the PR. Feature PRs that overlap
with planned core work may need to be redirected — check the roadmap
first. See `CONTRIBUTING.md`.

## Model Used

- Claude Opus 5.5 (`claude-opus-5-5`), Anthropic, through Claude Code
with tool use (file edits, shell, test runs).

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have searched GitHub for duplicate or related PRs and linked
them above
- [x] I have either (a) linked existing issues with `Fixes: #` / `Closes
#` / `Refs #` OR (b) described the issue in-PR following the relevant
issue template
- [x] I have not referenced internal/instance-local Paperclip issues or
links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip`
URLs)
- [x] My branch name describes the change (e.g. `docs/...`, `fix/...`)
and contains no internal Paperclip ticket id or instance-derived details
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [x] All Paperclip CI gates are green
- [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups
- [x] I will address all Greptile and reviewer comments before
requesting merge

🤖 Generated with [Claude Code](https://claude.com/claude-code)

---------

Co-authored-by: Claude Opus 5.5 <noreply@anthropic.com>
2026-11-06 10:35:57 -08:00
DottaandPaperclip 5d25117ffa fix(heartbeat): recover deferred dependency completion wakes (#19457)
## Thinking Path

> - Paperclip is the open source app people use to manage AI agents for
work.
> - Tasks wait for other tasks through saved dependency edges and wake
requests.
> - A dependency can finish while its assignee answers a question about
the blocked task.
> - Paperclip saves the completion wake behind that active turn.
> - Recovery did not find that saved wake unless it also contained a
comment or an interaction response.
> - This pull request restores that wake through the existing release
and dispatch checks.
> - The task can then continue after the active turn and its cleanup
finish.

## Linked Issues or Issue Description

**What happened?**

A task stayed blocked after its dependency finished. The completion wake
was saved while an audit turn was active. The wake stayed deferred after
that turn ended. It had no comment or interaction response, so both
recovery queries and the input guard excluded it.

**Expected behavior**

Recover the saved dependency wake when the prior turn and its cleanup
finish. Start one dependency continuation under the current execution
rules.

**Steps to reproduce**

1. Run a question response on a dependency-blocked task.
2. Finish the dependency while the response is active.
3. Save the completion wake behind that response.
4. Finish the response and its environment cleanup, or restart the
workers.
5. Observe that the saved wake has no run.

**Paperclip version or commit**

Reproduced against `70d23612dd`. Rechecked against `2f35eb1080` with the
final regression fixture.

**Deployment mode**

Source checkout on Linux x64, Node 25.9.0, pnpm 9.15.4, and isolated
embedded PostgreSQL.

Related work: #16673 added recovery for saved messages. #17288 and
#16966 address assignment wakes after cleanup. This change covers
dependency completion receipts with no message.

## What Changed

- Include saved `issue_blockers_resolved` receipts in worker
reconstruction and stranded queue selection.
- Let these receipts pass the input guard without a comment or
interaction response.
- Use the existing release transaction and dispatch checks. Add no
timer, migration, or direct task status change.
- Add process-backed regression cases for restart, cleanup release,
cancellation, agent pause, pending cleanup, and unresolved blockers.
- Update the dependency wake recovery document.

- Share the dependency-wake payload predicate and SQL fragment across
reconstruction and stranded receipt admission, so these eligibility
checks have one owner.

## Verification

- The final regression fails on the base code: the receipt stays
`deferred_issue_execution` and has no successor. The same test passes
with the fix.
- Six focused cases pass. They use real PostgreSQL and a real process
adapter. They check saved output, one dependency continuation, clean
task locks, repeat recovery, and execution gates. They do not call a
model provider.
- Three nearby suites pass: 125 tests across queue wiring, dependency
scheduling, and dependency recovery.
- Final-head server layered typechecking passes with
`PAPERCLIP_TYPECHECK_LOW_MEMORY=1`. Whitespace and module boundary
checks pass. Two parallel checker attempts reached the sandbox memory
limit; the completed low-memory check covers all source and test layers.
- The full deferred-receipt suite passes: 45 tests. Combined with the
nearby suites, 170 local tests pass. These results cover head
`8f9d3aa6ac19a6d2532bd869eb8adda7cf122a5a`. Required CI remains in
progress.
- Local workspace typechecking and build stop at the Runner Rust step
because Cargo is absent. The full local test suite was not run. Required
CI must supply broad coverage.
- The hosted incident has not been recovered or deployed from this
branch.

- Review follow-up at `182385e9bc433adac06440997de7e4cfbf889a72`: normal
merge of master `0d03610d2f73b7cd799547e43929bb2303319024`; no conflict
or history rewrite. All 54 receipt/helper cases pass on macOS arm64,
Node 26.4.0, real embedded PostgreSQL and process adapters. The six
dependency continuation and safety cases also pass separately. Module
boundaries and whitespace checks pass. No assertion, timeout, execution
gate or retry policy changed for this extraction.
- Current shared, SDK and adapter-utils source builds pass. The first
broad local server typecheck read stale borrowed adapter declarations;
rebuilding them exposed nominal type duplication between the borrowed
workspace and this checkout. It is not counted as a server typecheck
pass. All 30 SDK and 169 adapter runtime JavaScript outputs match the
previously tested artifacts. Final revision
`182385e9bc433adac06440997de7e4cfbf889a72` now passes all 55 applicable
CI checks (three skipped, one neutral review), including clean-workspace
typecheck, build and broad tests. [CI
result](https://github.com/paperclipai/paperclip/actions/runs/42262173960).
Greptile and Paperclip review both give 5/5 with no open findings.

## Risks

- Recovery now considers a saved dependency receipt with no message.
Current ownership, source finalization, cleanup, pause, cancellation,
and dependency checks still control execution.
- The scan remains bounded and uses existing transaction notifications
and restart reconstruction. The integration checks verify that it
becomes quiet after settlement.

## Model Used

- OpenAI Codex, based on GPT-6. The exact provider model ID and context
size are not exposed in this session. Used reasoning, tool calls,
TypeScript edits, and test execution.

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have searched GitHub for duplicate or related PRs and linked
them above
- [x] I have either (a) linked existing issues with `Fixes: #` / `Closes
#` / `Refs #` OR (b) described the issue in-PR following the relevant
issue template
- [x] I have not referenced internal/instance-local Paperclip issues or
links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip`
URLs)
- [x] My branch name describes the change (e.g. `docs/...`, `fix/...`)
and contains no internal Paperclip ticket id or instance-derived details
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [x] All Paperclip CI gates are green
- [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups
- [x] I will address all Greptile and reviewer comments before
requesting merge

---------

Co-authored-by: Paperclip <noreply@paperclip.ing>
2026-11-06 11:49:38 -06:00
DottaandPaperclip e3fb4bc73a fix(native): recover saved listener startup failures (#19479)
## Thinking Path

> - Paperclip manages AI agents and their work.
> - Native recovery must preserve saved work and respect current task
authority.
> - A closed local API listener can stop startup before a provider
starts.
> - #19462 gives new failures a bounded bootstrap retry.
> - Older saved failures still have a generic terminal code and a
recovery hold.
> - This pull request verifies the old producer outcome and uses the
existing safe replacement path.
> - Eligible tasks continue once. Unknown provider outcomes and user
holds remain blocked.

## Linked Issues or Issue Description

Refs: #19462

**What happened?**

A restart can leave an old listener startup failure in
`terminal_failure` with `native_session_interrupted`. Startup recovery
does not claim it after #19462. A completed file recovery can also
retain its no-replay hold.

**Expected behavior**

Continue automatically when durable records prove that no provider
started, the source stopped, and the current files were saved. Keep the
existing attempt budget and normal admission checks.

**Steps to reproduce**

1. Close the actual API listener after a fresh native coordinator claim.
2. Persist the old executor's generic failure. Save the workspace and
confirm source termination.
3. Restart recovery. The baseline schedules no successor. The repair
schedules one successor after all receipts pass.

**Paperclip version or commit**

Baseline: `0252421d5c`. Old failure producer: `2f35eb1080`.

**Deployment mode**

Built from source. Local macOS arm64, Node 26.4.0, real embedded
PostgreSQL, independent filesystem execution. No external AI service is
used by the controlled acceptance.

## What Changed

- Recognize the exact saved local-listener guard through one proof
predicate shared by discovery and the locked transaction.
- Require a fresh first attempt, matching execution bindings, no prior
provider lineage, no provider events or tool calls, no checkpoint or
admission receipt, and no cancellation.
- Reuse current snapshot, exact stop, source block, attempt budget, and
successor idempotency checks.
- Wait for completed source file-recovery receipts. Retire only that
same source's verified preservation hold in the successor transaction.
- Bound discovery to 100 candidates per pass, keep completed history
quiet, and wake through existing transactional producer notifications.
- Retain retries after transient database and final ownership-proof
errors; advance the bounded cursor and force a rescan so a failing page
cannot hide later work.
- Let only the replacement duty discharge a proved-empty notification
during drain through its existing read-only readiness check, once per
notification generation. Keep real work and concurrent changes
outstanding without running replacement during drain.
- Wake replacement at canonical local-stop proof writes and the existing
dispatch eligibility boundary; these hints grant no new execution
authority.
- Add database regressions, scheduler quietness checks, real controller
handoff coverage, and an opt-in controlled Runner continuation.

## Verification

Final production head: `0df41b2fef2644195d1224d36984af3827da3e3b`.

Local environment: macOS arm64, Node 26.4.0, TypeScript 7.0.2, Vitest
5.0.3, frozen-lockfile dependencies. Tests execute freshly;
`--fsModuleCache` reuses only content-validated module transforms.

- Native safe replacement: 62/62 PASS on isolated PostgreSQL 17 (63.18
seconds), including clean per-suite database disposal. All 62 assertions
also passed on embedded PostgreSQL 18 beta, but its Darwin cleanup hook
timed out; that invocation is not counted as a pass. Docker's disk was
full, so the disposable PostgreSQL 17 data used a size-limited RAM
mount, with no host mounts. The owned container was removed afterward.
- Actual stopped-process producer suite: 31/31 PASS. A real exited child
produces the stop receipt, and its replacement notification settles only
after the outer transaction commits.
- Workspace and separate-process drain regressions: 33/33 PASS (75.90
seconds).
- Shared coordinator and execution-control lifecycle checks: 39/39 PASS
(16.43 seconds). Pending work, concurrent changes, cold startup,
shutdown, and passive drain boundaries remain covered.
- Actual suppressed Cloud routine/drain workflow: PASS (34.64 seconds),
using the unchanged test and timeouts. Its matching local RED reproduced
CI's 462-query, zero-pending-query, one-idle-hold timeout after an
admitted write committed during drain (69.46 seconds).
- Actual historical controller handoff: PASS (48.40 seconds). A separate
controller loads the original executor from `2f35eb1080`, writes its
generic listener failure, and exits. Recovery at the final head admits
exactly one successor. The real Rust Runner and controlled Codex process
complete governed `paperclip_finish`; attempt two commits and the saved
file remains intact. Only the child loads the old artifact, and both
isolated artifacts are restored afterward. Rust source subtree
`77961b70f177ec3c38d11abcaec92fd3d0e96ec0` matches the built binary. No
external AI service is used.
- Seven corrected existing fixtures pass: transactional stop-proof calls
(5 cases) and notification inventory (2 cases). Their earlier CI
failures exposed fixture calls outside the documented transaction and an
outdated expected queue set.
- Server typecheck: PASS.

Red/green proofs also cover the original saved failure on baseline
`0252421d5c` (zero successors instead of one), held-history quietness,
bounded forward scanning through 100 parked rows and concurrent wakes,
real snapshot/cleanup producer notifications, actual issue-row lock
timeout, and task/history eligibility notifications. An obsolete
prior-run question can be skipped to request another proof check; actual
skip while the task is paused or the source owns provider tool activity
schedules no successor.

The failed-page regression starts with 25 persistent verifier errors and
a healthy candidate 26. Baseline RED repeats the first page. Repair
GREEN advances the healthy candidate, revisits the original failures
after their fault clears, creates all 26 successors exactly once, and
becomes quiet.

Greptile is SUCCESS, 5/5 on the exact final head (2026-11-06 17:09:21
UTC). Final-head CI is GREEN: 56 successful checks, three intentional
skips, one neutral result, and no pending or failing checks. [Attempt
two and
results](https://github.com/paperclipai/paperclip/actions/runs/42258352876/attempts/2)
include passing build, typecheck, Rust, native server, package, browser
E2E, serialized server, general server/chat tests, and final
verification. Five jobs in the first attempt were interrupted together
at 17:13:12 UTC; the native-server log records an explicit runner
shutdown signal. The single infrastructure retry reran only those five
jobs and dependent verification, preserving the 49 successful checks on
the unchanged head. No timeout was weakened, and setup failures or
interrupted invocations are not counted as passes.

Focused commands from the repository root:

```sh
./server/node_modules/.bin/vitest run --project @paperclipai/server server/src/services/remote-workspaces.integration.test.ts server/src/services/native-runtime/native-runner-restart-preparation.integration.test.ts -t 'native safe-replacement decision|reconciles the drained remote backend' --fsModuleCache --reporter=dot
./server/node_modules/.bin/vitest run --project @paperclipai/server server/src/__tests__/execution-control-work.test.ts server/src/__tests__/delivery-work-coordinator.test.ts -t 'execution-control lifecycle|work coordinator' --fsModuleCache --reporter=dot
node node_modules/typescript/bin/tsc -p server/tsconfig.json --noEmit --pretty false
```

The historical acceptance sets `PAPERCLIP_TEST_HISTORICAL_LISTENER=1`
and uses an original-executor child artifact with a `try/finally`
restore. Normal regressions require no Rust binary.

## Risks

- Compatibility is deliberately limited to positively proved fresh
remote startup failures. Other old ambiguous failures remain held.
- Existing provider work, a changed task block, incomplete preservation,
or revoked authority must prevent execution. Normal retry admission
remains in control.
- This PR does not deploy the change or mutate a hosted task. Hosted
recovery still requires the repaired revision and all current proof
gates.

## Model Used

OpenAI GPT-6 through Codex, with reasoning, tool use, and code
execution. The exact backend model identifier and context window are not
exposed in this session.

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have searched GitHub for duplicate or related PRs and linked
them above
- [x] I have either (a) linked existing issues with `Fixes: #` / `Closes
#` / `Refs #` OR (b) described the issue in-PR following the relevant
issue template
- [x] I have not referenced internal/instance-local Paperclip issues or
links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip`
URLs)
- [x] My branch name describes the change (e.g. `docs/...`, `fix/...`)
and contains no internal Paperclip ticket id or instance-derived details
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [x] All Paperclip CI gates are green
- [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups
- [x] I will address all Greptile and reviewer comments before
requesting merge

---------

Co-authored-by: Paperclip <noreply@paperclip.ing>
2026-11-06 11:49:28 -06:00
Nicky LeachandClaude Opus 5.5 98ebeefbc9 feat(environments): let managed config declare plugin environments (#19508)
## Thinking Path

> - Paperclip is the open source app people use to manage AI agents for
work
> - A managed instance gets its instance-level environments from the
`PAPERCLIP_MANAGED_CONFIG` document
> - #19490 added the plugin environment rows, their marker index and
write floor, but nothing creates them yet
> - The managed config still accepts only one sandbox entry, so a
managed instance cannot get a plugin-provided environment without manual
setup
> - This pull request lets the managed config declare plugin entries
beside the sandbox entry, and provisions one locked row for each at boot
> - The benefit is that a managed instance gets its plugin environments
with no manual setup, and the rows recover by themselves when their
plugin restarts

## Linked Issues or Issue Description

Refs #19490 (the plugin environment rows this pull request provisions)

**Subsystem affected**
Server environments: the managed-config parser, the managed environment
bootstrap, and the environment routes' write floor.

**Problem or motivation**
A managed instance cannot get a plugin environment from its managed
config. The `environments` section accepts one entry, and that entry
always provisions the managed sandbox. Company settings cannot create a
plugin environment either. So each managed instance that needs one
requires manual setup.

**Proposed solution**
Let an `environments` entry declare `driver: "plugin"`. Boot provisions
one locked row for each plugin entry through the row layer from #19490.
A later pull request adds a one-time instance default for one plugin
entry, and advertises the new managed-config capability.

**Alternatives considered**
Manual setup on each instance, and a new control-plane endpoint. Both
need a step outside the deploy. The managed config already delivers the
sandbox entry.

**Roadmap alignment**
This extends the existing managed-config `environments` section, which
already provisions the managed sandbox. It adds no new product surface.

## What Changed

- `server/src/services/managed-config.ts`: an `environments` entry may
set `driver` to `"sandbox"` or `"plugin"`. An entry without `driver` is
still the sandbox entry, so today's documents parse unchanged.
- A plugin entry has `name`, optional `description`, `pluginKey` (the
plugin's manifest id), `driverKey` and optional `driverConfig`.
- At most one sandbox entry. Names are unique across the section, and
`pluginKey`–`driverKey` pairs are unique. Secret-like keys in
`driverConfig` refuse startup, as for sandbox `config`. An unknown key
or driver still refuses startup, and that includes `instanceDefault`
until the follow-up pull request.
- Plugin entries parse into a new `pluginEnvironments` list. The
`environments` list keeps only the sandbox entry, so its consumers do
not change.
  - `MANAGED_ENVIRONMENT_DRIVERS` lists the accepted drivers.
- `server/src/services/managed-environments.ts`
(`applyManagedEnvironments`):
- Boot refuses to start unless an auto-installed catalog entry installs
each plugin entry's `pluginKey`. `plugins.autoInstall` holds catalog
keys, not manifest ids, so the parser cannot check this. Boot uses the
manifest ids `createApp` already resolves from the bundled and
distribution catalogs (`app.locals.managedBundledPluginKeys`, passed in
by `server/src/index.ts`). Without that list it resolves the catalog
itself.
- Plugin entries run after the sandbox entry and reuse its readiness
handling. Boot awaits `pluginsReady`, then requires the plugin `ready`,
declaring the entry's driver, and running a worker. Otherwise boot
archives the row and re-ensures it on the worker's `ready`.
- Recovery re-ensures on every worker `ready` until one ensure succeeds
or the plugin rejects the config (HTTP 422).
- If the ensure fails because the worker died, boot archives the row and
waits for `ready`. If the worker is still running (for example the call
timed out), boot keeps the row as it is, retries once at once and on the
next `ready`, and otherwise at the next boot. No timer is added.
  - Removing an entry never archives its row.
- A plugin-only document does not conflict with
`PAPERCLIP_EXECUTION_MODE`, because plugin rows do not use the sandbox
slot.
- Plugin entries never change the instance default. The sandbox stamp
still fills only an unset or local default, so it never replaces a
plugin default.
- `server/src/routes/environments.ts`: `isPlatformSlotEnvironment`
treats a marked plugin row as a live slot while the document declares
its entry. So the marker-clear escape hatch is refused then, and allowed
again after the entry leaves the document.
- `doc/DEVELOPING.md`: new "Managed environments" section.

## Verification

- `cd server && npx vitest run src/__tests__/managed-config.test.ts`:
old documents parse unchanged. Sandbox plus plugin parses. Each of these
refuses startup: two sandbox entries, `driver: null`, duplicate names, a
duplicate pair, a secret-like key, an unknown key (including
`instanceDefault`), an unknown driver, a malformed `driverKey` or
`driverConfig`.
- `npx vitest run
src/services/managed-environments-plugin-entries.test.ts` (the
sandbox-entry tests stay in `managed-environments.test.ts`; shared
fixtures are in `managed-environments.test-support.ts`):
- A plugin entry is ensured with the validator's worker manager, after
the sandbox entry.
- Boot refuses a plugin entry whose `pluginKey` no auto-installed
catalog entry installs, both from the passed list and from its own
catalog lookup.
- A plugin that is down archives the row, and worker recovery re-ensures
it. A missing plugin, a plugin without the driver, or a worker manager
without `call` counts as unavailable.
- Recovery stays armed after a failed attempt and stops after one
success or a permanent config rejection (422). A `ready` during an
attempt queues one more.
- A worker that dies during the boot ensure archives the row and arms
recovery. A failure while the worker keeps running leaves the row as it
is and retries.
- Removing an entry does not archive. Plugin entries and the sandbox
stamp never change a plugin default.
  - An ensure failure is counted, not thrown.
- `npx vitest run src/__tests__/managed-plugin-environments.test.ts`
(embedded Postgres, real `applyManagedEnvironments`): the first boot
creates the row and the second changes nothing. A plugin that is down
archives the row, and recovery brings it back. Removing the entry does
not archive the row. The instance default stays unset. The row tests
from #19490 still pass.
- `npx vitest run src/__tests__/environment-routes.test.ts`: the marker
clear is refused while the document declares the entry, and allowed
after it leaves.
- `npx vitest run src/__tests__/instance-settings-service.test.ts
src/__tests__/instance-settings-cloud-defaults.test.ts`: pass with the
new `pluginEnvironments` field.
- `pnpm --filter @paperclipai/server typecheck` passes.
- I did not run the full `pnpm test:run`, `pnpm -r typecheck` or `pnpm
build`. CI covers them.

## Risks

- No schema change.
- A managed-config document with a plugin entry now provisions a row at
boot. A document without one behaves as before.
- Adoption renames an unmarked row for the same plugin and driver to the
declared name and resets its driver config to the declared one. The row
keeps its id, agents and other metadata, and it is then locked like the
managed sandbox.
- Boot now refuses to start when a plugin entry names a plugin that no
auto-installed catalog entry provides. This is the same fail-closed
posture as an unknown sandbox provider.

> For core feature work, check [`ROADMAP.md`](ROADMAP.md) first and
discuss it in `#dev` before opening the PR. Feature PRs that overlap
with planned core work may need to be redirected — check the roadmap
first. See `CONTRIBUTING.md`.

## Model Used

- Claude Opus 5.5 (`claude-opus-5-5`), Anthropic, through Claude Code
with tool use (file edits, shell, test runs).

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have searched GitHub for duplicate or related PRs and linked
them above
- [x] I have either (a) linked existing issues with `Fixes: #` / `Closes
#` / `Refs #` OR (b) described the issue in-PR following the relevant
issue template
- [x] I have not referenced internal/instance-local Paperclip issues or
links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip`
URLs)
- [x] My branch name describes the change (e.g. `docs/...`, `fix/...`)
and contains no internal Paperclip ticket id or instance-derived details
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [ ] All Paperclip CI gates are green
- [ ] Greptile is 5/5 with no open P2s, recommendations, or follow-ups
- [x] I will address all Greptile and reviewer comments before
requesting merge

🤖 Generated with [Claude Code](https://claude.com/claude-code)

---------

Co-authored-by: Claude Opus 5.5 <noreply@anthropic.com>
2026-11-06 17:35:13 +00:00
DottaandClaude Opus 5.5 543aa4d331 fix(tasks): show a pending native same-run resume instead of a competing Retry (#19503)
## Thinking Path

> - Paperclip is the open source app people use to manage AI agents for
work
> - When a native run cannot reattach to its provider after a
control-plane restart, the native coordinator resumes the same run by
itself after about 30 seconds, up to three attempts
> - The run projection shows this correctly as "Retry scheduled" with
only `inspect_run` permitted
> - The task interruption shown on the issue read only system-recovery
evidence and `scheduledRetryAt`. It never read the coordinator's
`nextAttemptAt`, so it showed `state: failed, canRetry: true` and
offered a manual Retry while the automatic resume was still pending
> - The two surfaces disagree, and a user click can race the automatic
resume. That is one way a Retry gets parked behind "execution checks"
> - This pull request makes the task interruption read the coordinator's
pending resume time
> - The benefit is one consistent story: while the automatic resume is
pending, the task shows it with its time and no competing Retry. If
recovery ends, exactly one Retry returns

## Linked Issues or Issue Description

Refs #19487, #19497, #19426.

**What happened?**
A native run failed with `native_session_interrupted` after a restart.
Its finalization row had `phase: retryable_failure` and `nextAttemptAt`
30 seconds later. The run projection said "Retry scheduled". The issue
interruption said `state: failed, canRetry: true, nextRetryAt: null`.

**What did you expect?**
While the automatic resume is pending, the task shows that it is
resuming, with the time, and no Retry. When the resume fails for good or
never runs, exactly one Retry that works on the first click.

**Steps to reproduce**
1. Run a native task and restart the control plane so the native attach
fails.
2. Read `GET /api/issues/:id` while the coordinator's resume is pending.
3. Observe `interruption.canRetry: true` while `execution.phase` is
`retry_scheduled`.

## What Changed

- `task-interruption-presentation.ts`: the batched run read selects the
native coordinator's `next_attempt_at` when the native run failed, has
no result, and its finalization phase is `retryable_failure`.
- A pending resume in the future shows `retry_scheduled` with its time
and `canRetry: false`.
- A due resume shows `working` for up to two minutes while its dispatch
runs. After that, or once recovery is terminal, the task falls through
to the existing single Retry.

## Verification

- `task-interruption-presentation.test.ts`: new case for a future
resume, a due resume, a stale resume, and no resume. It fails before the
change (the task offered Retry) and passes after.
- `task-interruption-query.test.ts` (embedded Postgres): the real
batched query shows the pending resume for both list and detail reads,
and returns one Retry after the coordinator becomes `terminal_failure`.
- All 40 presentation tests and 17 query tests pass. Server typecheck
passes.

## Risks

- Low risk. This changes only the read model for tasks whose native
coordinator holds a pending same-run resume.
- If a resume never dispatches, Retry is hidden for up to two minutes
after its due time before it returns.
- The `POST /issues/:id/retry` endpoint is unchanged. A client that
ignores `canRetry` can still submit a Retry during the resume.

## Model Used

- Claude Opus 5.5 (`claude-opus-5-5`), Anthropic, via Claude Code with
tool use (shell, file editing, embedded Postgres tests).

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have searched GitHub for duplicate or related PRs and linked
them above
- [x] I have either (a) linked existing issues with `Fixes: #` / `Closes
#` / `Refs #` OR (b) described the issue in-PR following the relevant
issue template
- [x] I have not referenced internal/instance-local Paperclip issues or
links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip`
URLs)
- [x] My branch name describes the change (e.g. `docs/...`, `fix/...`)
and contains no internal Paperclip ticket id or instance-derived details
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [ ] All Paperclip CI gates are green
- [ ] Greptile is 5/5 with no open P2s, recommendations, or follow-ups
- [x] I will address all Greptile and reviewer comments before
requesting merge

🤖 Generated with [Claude Code](https://claude.com/claude-code)

Co-authored-by: Claude Opus 5.5 <noreply@anthropic.com>
2026-11-06 11:33:46 -06:00