3 Commits

Include renames

Author	SHA1	Message	Date
DottaandPaperclip	0e15c92073	feat(skills): make managed content independent of web-server disk (#18334) ... ## Thinking Path > - Paperclip is the open source app people use to manage AI agents for work. > - Agents use installed skills and exact version pins during execution. > - Managed skills still depended on mutable directories on the web server. > - A replacement server could lose acknowledged edits or remove an unassigned skill whose directory was absent. > - This pull request makes immutable versions the authority for managed content and installed repository reads. > - The server can rebuild delivery files from durable content after replacement. > - This establishes skills readiness for ephemeral web servers. General server draining and workspace recovery remain separate work. ## Linked Issues or Issue Description **Subsystem affected** Skills services, shared contracts, database receipts, Skill Studio, and runtime delivery. **Problem or motivation** A fresh web server must discover, read, edit, and deliver protected installed skills using the same database, object storage, secrets, and supported application artifacts. It must not need its predecessor's files or process memory. **Proposed solution** Use `managed` ownership with a null source locator. Read installed content by immutable version. Prepare packages before a short publication transaction. Persist execution selections before materialization. Recover exact pinned runtime assets and reject deletion while active or recovering pins exist. **Alternatives considered** Reconstructing a mutable installed directory preserves the old source-of-truth ambiguity. Permanent dual writes create two competing authorities. This change uses one managed model after a bounded legacy conversion. **Roadmap alignment** This improves the existing Skills Manager, Studio, version history, and Cloud execution capabilities. The maintainer supplied the implementation contract. This does not add a separate skills product or deploy fleet changes. Related work: #18082 supplies immutable package storage. #17273 addresses edits outside the API for linked local skills; this PR keeps that source category separate. #2648 is a closed earlier ephemeral-filesystem proposal. ## What Changed - Add managed ownership and focused content publication and execution materialization modules. Keep the archive format and package storage tables. - Publish managed create, save, delete, fork, rename, restore, and catalog content with version checks. Add durable create receipts. Preserve file-save receipt responses. - Return file version identities. Keep Studio drafts after a conflict and provide an explicit reload action. A delayed reload cannot overwrite newer typing or navigation. - Persist exact runtime selections, including empty selections. Rebuild pinned assets and verify their admitted digests on a replacement server. - Preserve source access on forks and disconnected copies. Keep the existing workspace policy category for managed skills. - Add bounded conversion, eligibility, and independent verification phases. Load persisted Cloud configuration in the standalone CLI without seeding or changing it. Reject partial current versions against installed inventories; recover only complete saved content or the exact source. Document storage migration blockers and the compatible rollback floor. - Add separate-process PostgreSQL/S3 qualification and update domain, retention, policy, and UI regressions. - Pass the plugin worker manager into Studio execution, admit restricted `skill_test` mode through native Runner contracts, and preserve admitted scope across native and REST tools. Native tests cannot create ordinary tasks, browse company data, or use external tools. - Select the exact durable Studio revision even when unassigned or Beta skills is off. Persist Studio output and audit atomically with native task completion, preserving the result on replay. ## Verification - Final revision `13e8af480b88ba6fea5737bac4bd81104d604792` passed full CI: all 49 workflow jobs completed successfully ([run 41127396098](https://github.com/paperclipai/paperclip/actions/runs/41127396098)). This includes typecheck, test suites, Runner checks, browser checks and build. Greptile review 15 is 5/5 on that same revision, with zero unresolved threads. The PR is ready for review. - Local workspace typecheck and build passed after integrating master. Focused checks passed: 33 execution/completion cases, 52 Runner HTTP cases, 16 managed-content cases, 17 Studio cases, the new real-process CLI regression, map checks and UI token gates. The CLI regression proves inspection does not seed missing Cloud configuration. Server typecheck passed after that fix. - The independent-process PostgreSQL/S3 matrix passed through normal HTTP skill routes. It covers A → B → C replacement, lost commit responses, upload crashes, concurrent saves, binary contents and executable delivery. Metadata listing and warm selected delivery retain zero object downloads. Local timing measurements are recorded; they do not establish hosted latency. - Hosted A → B → C passed on the owned disposable test tenant with external Postgres, S3 and a real remote Paperclip Computer. Predecessor temporary homes were absent. C read and executed B's acknowledged managed save. New runs used repository v1 while v2 was installed. Hashes matched an independently checked exact upstream commit. - Compatible image rollback to `6518b323` passed. Studio retained the unassigned fork's C save. A fresh remote run executed the newer managed content and historical repository pin. The actual shell event confirmed expected hashes, stdout, exit 0 and mode 0555. - Runtime candidate `9200e3fcb4` deployed successfully ([Cloud run 41124147876](https://github.com/paperclipai/paperclip-cloud/actions/runs/41124147876)). The final Studio test delivered only the unassigned fork's exact v3, executed its script and persisted a successful output snapshot. Independent command-event inspection confirmed all three hashes, stdout, exit 0 and mode 0555. All 14 installations were version-backed. Independent verification checked all 25 versions: 23 remote objects, two bundled database snapshots, zero blockers. - The deployed image is `9200e3fcb4`. Later master integration, the client-only delayed-reload draft guard and the CLI bootstrap have separate automated proof. The CLI bootstrap was also exercised against the tenant's stored configuration and storage through the same read-only services. This PR does not claim that the deployed image is the final PR revision. - Live Studio checks exposed worker wiring, admission, access scope, exact selection and completion-publication gaps. They are fixed. Failed attempts remain in the evidence. The full local suite exceeded 80 minutes under host contention and was stopped. Later combined/isolated local attempts also timed out; they are not counted as passes. Full CI covers the integrated suites. Earlier CI found an obsolete restart-scope fixture, which was corrected and passed all 52 HTTP cases. - Reproduction and migration: [`doc/skill-ephemeral-web-servers.md`](doc/skill-ephemeral-web-servers.md). Source revisions, deployments, versions, run IDs, hashes and failure history: [`doc/plans/2026-10-30-ephemeral-web-skills.md`](doc/plans/2026-10-30-ephemeral-web-skills.md). ## Risks - Legacy conversion requires stopped admission and retired filesystem-authoritative writers. Pre-conversion binaries are not supported rollback targets afterward. - Cloud readiness requires remote object storage. Local provider receipts and provider mismatches remain blockers until objects are copied and verified. - Linked local sources retain filesystem semantics and are outside the cloud guarantee. - Cold reads still fetch the existing archive format. Warm runtime preparation retains the verified-cache path. - Bundled reconciliation preserves an installed head. Existing release snapshots remain selectable. An older server must not replace a newer head with its shipped files. - No production volumes, fleet defaults, or general deployment coordination change in this PR. ## Model Used OpenAI Codex, GPT-6 family, with reasoning, repository tools, code execution, and browser use. The exact backend model ID and context-window size are not exposed in this session. No subagents were used. ## Checklist - [x] I have included a thinking path that traces from project context to this change - [x] I have specified the model used (with version and capability details) - [x] I have checked ROADMAP.md and confirmed this PR does not duplicate planned core work - [x] I have searched GitHub for duplicate or related PRs and linked them above - [x] I have either (a) linked existing issues with `Fixes: #` / `Closes #` / `Refs #` OR (b) described the issue in-PR following the relevant issue template - [x] I have not referenced internal/instance-local Paperclip issues or links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip` URLs) - [x] My branch name describes the change (e.g. `docs/...`, `fix/...`) and contains no internal Paperclip ticket id or instance-derived details - [x] I have run tests locally and they pass - [x] I have added or updated tests where applicable - [x] I have updated relevant documentation to reflect my changes - [x] I have considered and documented any risks above - [x] All Paperclip CI gates are green - [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups - [x] I will address all Greptile and reviewer comments before requesting merge --------- Co-authored-by: Paperclip <noreply@paperclip.ing>	2026-10-30 16:18:27 -05:00
Nicky LeachandPaperclip	4ff493fb40	feat(plugins): include managed skills for selected environments (#17774) ... ## Thinking Path > - Paperclip manages agents and their execution environments. > - Plugins can vendor company skills and provide environments. > - Environment tools need their instructions before the provider starts. > - Persistent computers also need those skills before any run begins. > - This change adds environment requirements to normal skill selection and lifecycle synchronization. > - Plugin names prevent ambiguity, and required skills take delivery precedence without deleting company data. ## Linked Issues or Issue Description **Problem or motivation** An environment can provide desktop tools while its agent receives no instructions for those tools. A first-run-only import also leaves idle computers without required skills. Same-name company skills can make provider discovery ambiguous. **Proposed solution** Let plugin environment drivers declare their managed `skillKeys`. Install missing requirements during lifecycle reconciliation or new-run preparation. Deliver updates through the durable runtime event journal. Give managed imports stable plugin names and report shadowed assignments. **Alternatives considered** ROM links do not make a skill a normal Paperclip selection. Polling duplicates the existing lifecycle delivery queue. Replacing a same-name company record would destroy independent data and assignments. **Roadmap alignment** This extends the shipped Plugin system and Skills Manager. The existing related-PR search found no duplicate contract. ## What Changed - Validate `environmentDrivers[].skillKeys` as unique references to the same plugin's managed skills. Require a ready, enabled plugin with `skills.managed` authority. - Resolve company-scoped skills before version capture. Preserve explicit pins, company edits, and saved recovery selections. Serialize concurrent first installs. - Allow lifecycle callers to request missing-skill installation through `agents.getRuntime`. Ordinary task and recovery reads do not install new declarations. Pass task-selected environment IDs through the SDK. - Add SQL migration `0378_environment_skill_runtime_hooks`. Required skill edits, effective default changes, environment changes, and plugin requirement changes enqueue durable runtime events. Reuse lifecycle delivery and retries; add no polling. - Import managed defaults as `plugin-<short-plugin-id>-<skill-slug>`, including the SKILL.md name. Preserve canonical keys. Keep same-name company records separate without counter suffixes. - Required environment skills win delivery over same-name company assignments. Preserve saved assignments and library content. Record shadowed and winning keys in run warnings, run snapshots, and plugin runtime state. Removing the environment requirement restores the ordinary assignment. - Document the contract for `driver: "plugin"`. Other drivers and plugins without requirements keep existing behavior. Existing managed copies retain edits and names until reset. ## Verification - Latest targeted local checks: environment skills (5), managed skills (9), heartbeat execution configuration (27), and SDK worker RPC host (23): **65 tests passed** (including the targeted schema-drift check). Disposable PostgreSQL exercised the migration, first install before any run, concurrent lifecycle reads, implicit edit events, inherited defaults, rollback, plugin requirement changes, shadowing, preserved records, version capture, and recovery. - Review follow-up also verifies case-insensitive/runtime-name aliases, recovery of a task-mentioned shadowed skill, preserved quoted/multiline YAML, and zero runtime events for repeated local-folder settings writes. - Migration numbering and safety checks passed. Whitespace and secret/PII scans passed. - Earlier targeted manifest validation passed (43 tests). No validator behavior changed in this follow-up. - Broad tests, typecheck, build and end-to-end verification passed in [GitHub CI](https://github.com/paperclipai/paperclip/actions/runs/40387647219) for current head `ce57f2a4d`. Greptile is 5/5 with no unresolved threads. The [commitperclip review check](https://github.com/paperclipai/paperclip/actions/runs/40387646208) also passed after restoring its required duplicate-search checkbox. - Earlier attempts found a SQL alias collision, an unparenthesized CASE expression, and fixture assumptions about bundled catalog rows and YAML quoting. These were corrected before the passing checks. The first broad CI run also exposed a schema-drift check that assumed every journal entry had a schema snapshot; it now reads the latest actual snapshot, so SQL-only migrations need no invented snapshot. A test callback replacement also affected an unrelated fixture; it was restored before the final passing execution-configuration suite. Sandbox runs could not start PostgreSQL; the reported database tests used local socket access. ## Risks - Apply migration 0378 before using the updated lifecycle contract. It adds trigger functions and event producers; it does not rewrite agent assignments or skill content. - Required environment skills take precedence over same-name assignments, including task-selected skills. Both library records remain. Run warnings identify omissions. - Company edits are preserved. Plugin upgrades do not reset installed content or rename existing copies. Explicit reset adopts current defaults. - Namespaced library slugs can be shared by distinct canonical records. Callers must use IDs or canonical keys when a slug is ambiguous. - No live provider request or deployment was performed. The downstream plugin must be built against this Core revision. Persistent-home synchronization retains its existing edit-conflict and retry behavior. ## Model Used OpenAI Codex, GPT-6 family, with reasoning, repository tools, and code execution. The exact model identifier and context-window size are not exposed in this task context. ## Checklist - [x] Thinking path and issue description included - [x] Model and available capabilities recorded - [x] Roadmap and related PRs checked - [x] I have searched GitHub for duplicate or related PRs and linked them above - [x] Public references only; no internal issue IDs or instance URLs - [x] Targeted local tests pass; broad verification delegated to GitHub CI - [x] New behavior covered and documentation updated - [x] Current-head CI green and Greptile 5/5 with no unresolved comments --------- Co-authored-by: Paperclip <noreply@paperclip.ing>	2026-10-26 14:11:35 -07:00
DottaandPaperclip	0096b56a1c	[codex] Add LLM Wiki plugin host support (#5597) ... ## Thinking Path > - Paperclip orchestrates AI agents for zero-human companies. > - The plugin system needs host contracts and runtime support before large plugins can integrate cleanly. > - The source branch mixed the LLM Wiki package with supporting host/runtime work, managed plugin skills, root-level storage spaces, and a bookmarks reference plugin. > - [PAP-9173](/PAP/issues/PAP-9173) asked for the current branch to be split by file boundary: plugin package separately from everything else. > - [PAP-9188](/PAP/issues/PAP-9188) clarified that LLM Wiki may have plugin-local spaces, but Paperclip core should not reorganize top-level local storage into spaces. > - Follow-up review clarified that the bookmarks example should not ship in this PR either. > - This pull request contains the non-`packages/plugins/plugin-llm-wiki/` host/runtime work, keeps runtime state under the selected Paperclip instance root, and no longer includes the bookmarks example. ## What Changed - Added/updated plugin host contracts, SDK types, worker RPC plumbing, managed plugin skill support, and related server tests. - Removed the bookmarks example plugin package and its bundled-example/workspace references. - Removed the root-level local spaces CLI/migration surface and restored instance-root runtime defaults for config, db, logs, storage, secrets, workspaces, projects, and adapter homes. - Replaced shared root `space-paths` helpers with `home-paths` helpers for core runtime storage. - Tightened stranded recovery unique-conflict detection so concurrent recovery scans reuse the raced recovery issue when Postgres errors are wrapped. - Kept `packages/plugins/plugin-llm-wiki/` out of this PR diff; plugin-local spaces remain in the stacked plugin-only PR. ## Verification - `pnpm exec vitest run cli/src/__tests__/data-dir.test.ts cli/src/__tests__/home-paths.test.ts cli/src/__tests__/onboard.test.ts packages/shared/src/home-paths.test.ts packages/db/src/runtime-config.test.ts server/src/__tests__/agent-instructions-service.test.ts server/src/__tests__/claude-local-execute.test.ts server/src/__tests__/codex-local-execute.test.ts` - `pnpm exec vitest run packages/db/src/runtime-config.test.ts` - `pnpm exec vitest run server/src/__tests__/plugin-routes-authz.test.ts` - `pnpm --filter @paperclipai/server typecheck` - `pnpm exec vitest run server/src/__tests__/heartbeat-process-recovery.test.ts -t "reuses the raced stranded recovery issue"` skipped locally because embedded Postgres did not initialize on this macOS temp host; the code path was typechecked and is covered by Linux CI. - Boundary check: no core references remain for `PAPERCLIP_SPACE_ID`, `spaces migrate-default`, `@paperclipai/shared/space-paths`, `registerSpacesCommands`, or the removed bookmarks example. - Previous PR head `4f23e034` had green GitHub checks: `verify`, all four serialized server shards, `e2e`, `Canary Dry Run`, `policy`, Snyk, and `Greptile Review`. Current head `582f466d` is re-running checks after the bookmarks deletion. ## Risks - Plugin host changes touch shared runtime paths, so regressions would most likely appear in adapter startup, plugin loading, or local dev path defaults. - Removing the bookmarks example also removes one demonstration of plugin database namespaces plus local-folder persistence; remaining plugin examples still cover bundled example discovery and plugin host flows. - The plugin package itself is intentionally deferred to the stacked plugin-only PR, where LLM Wiki plugin-local spaces live. - Existing installs that tested the transient root-level spaces CLI should stop using it; this PR intentionally removes that unsupported migration surface before merge. > For core feature work, check [`ROADMAP.md`](ROADMAP.md) first and discuss it in `#dev` before opening the PR. Feature PRs that overlap with planned core work may need to be redirected — check the roadmap first. See `CONTRIBUTING.md`. ## Model Used - OpenAI GPT-5 Codex via Codex CLI, tool use and local code execution enabled; context window not exposed. ## Checklist - [x] I have included a thinking path that traces from project context to this change - [x] I have specified the model used (with version and capability details) - [x] I have checked ROADMAP.md and confirmed this PR does not duplicate planned core work - [x] I have run tests locally and they pass, except where noted above for host-specific embedded Postgres initialization - [x] I have added or updated tests where applicable - [x] If this change affects the UI, I have included before/after screenshots - [x] I have updated relevant documentation to reflect my changes - [x] I have considered and documented any risks above - [x] I will address all Greptile and reviewer comments before requesting merge Stacked follow-up: PR #5592 contains only `packages/plugins/plugin-llm-wiki/` and targets this branch. --------- Co-authored-by: Paperclip <noreply@paperclip.ing>	2026-05-10 07:34:12 -05:00