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DottaandClaude Opus 5.5 84908d176b fix(recovery): name the failed check in native_remote_recovery_lease_mismatch (#19839)
## Thinking Path

> - Paperclip is the open source app people use to manage AI agents for
work
> - Remote native runs execute in a sandbox, and recovery can reattach a
run to its original sandbox runner
> - Reattachment checks the saved lease, workspace, and runner identity
in five places. Each failed check throws the same bare
`native_remote_recovery_lease_mismatch`
> - On staging, 34 OpenCode runs on 31 tasks failed with this bare error
in one evening. The run records could not show which check failed, so
the cause could not be confirmed from the run alone
> - This pull request makes every producer name the failed step and
field with closed values
> - The benefit is that an operator and the next investigation can see
which reattachment check failed, without new logging or identifiers in
the error

## Linked Issues or Issue Description

Refs #19399, Refs #19733, Refs #19755, Refs #19779

**What happened?**
Remote same-run retries failed with
`native_remote_recovery_lease_mismatch` and the task was blocked for
reconciliation. The error is thrown by environment acquire, environment
resume, workspace preparation, workspace sync, and remote runner
verification. All of them used the same bare string. The run's `error`
field and its run events did not show which check failed.

**Steps to reproduce**
1. Start reattachment for a remote native run whose saved lease,
workspace reference, or runner identity no longer matches.
2. Read the run's `error`.
3. It shows only `native_remote_recovery_lease_mismatch`.

**Expected behavior**
The error names the step and the field that differed, with no
identifiers, and existing consumers of the code keep working.

## What Changed

- New
`server/src/services/native-runtime/remote-recovery-lease-mismatch.ts`:
the code constant, a closed `stage` and `field` vocabulary, and
`remoteRecoveryLeaseMismatch(stage, field)`. It builds
`native_remote_recovery_lease_mismatch: stage=<stage> field=<field>`.
- `environment-run-orchestrator.ts` (stages `environment_acquire` and
`environment_resume`), `heartbeat/workspace-preparation.ts`
(`workspace_preparation`), `native-workspace-sync.ts`
(`workspace_sync`), and `verifyRemoteRunnerReattachment` in
`native-session-executor.ts` (`runner_verification`) now throw the
detailed form. Each check keeps the same condition and order. Only the
message changes.
- `restart-interrupted-turn.ts` uses the shared constant. It already
matches the code exactly or as the `code: ` prefix, so automatic
continuation after a reattachment loss is unchanged. No other consumer
matches the code.
- `doc/execution-semantics.md` documents the detail format.

## Previous-release state

This change adds no persisted state and changes no saved identity. Runs
that a previous release failed keep the bare
`native_remote_recovery_lease_mismatch` in `error`. Runs failed by this
release store the detailed form. The only consumer (`isReattachmentLoss`
in `restart-interrupted-turn.ts`) accepts both forms, and
`workspace-recovery-retry-copyback.test.ts` covers both.

## Verification

- Exact-detail assertions in the producer tests:
- `server/src/__tests__/environment-run-orchestrator.test.ts`: every
scope, status, expiry, provider, lease-ID, cwd, plugin-task, and resume
case asserts its stage and field. Against the previous producer, 21 of
these cases fail (the message was the bare code). With this change, all
57 tests pass.
- `native-session-executor.test.ts`: a replaced sandbox reports
`runner_verification`/`provider_lease_id`. A missing durable runner
identity reports `identity_run_id` before any sandbox read.
- `native-workspace-sync.test.ts`,
`heartbeat/workspace-preparation.test.ts`,
`native-controller-recovery.integration.test.ts` assert their exact
detail.
- End to end on embedded PostgreSQL:
`heartbeat-native-remote-failure-retention.test.ts` records
`native_remote_recovery_lease_mismatch: stage=environment_resume
field=lease` on the run when the provider no longer resumes the lease,
and it still requests the user's Retry once.
`workspace-recovery-retry-copyback.test.ts` adds a detailed-form row
that still continues once.
- The affected server test files pass locally. `pnpm --filter
@paperclipai/server typecheck` passes.

## Risks

- Low risk. Only the error text changes. Conditions, ordering, and
fail-closed behavior are unchanged.
- Logs and run errors show a longer message. The detail has closed
values only, so it adds no identifiers or secrets.
- A first version of this PR also changed remote retry selection. Review
showed that a plain resume in a new sandbox hits the remote workspace's
unsaved-work hold, and that a `destroy` disposition does not prove the
old sandbox is gone. That change is removed. It needs a separate design.

## Model Used

- Claude Opus 5.5 (Anthropic), model ID `claude-opus-5-5`, run in Claude
Code with tool use (shell, file editing, read-only browser access to
staging).

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have searched GitHub for duplicate or related PRs and linked
them above
- [x] I have either (a) linked existing issues with `Fixes: #` / `Closes
#` / `Refs #` OR (b) described the issue in-PR following the relevant
issue template
- [x] I have not referenced internal/instance-local Paperclip issues or
links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip`
URLs)
- [x] My branch name describes the change (e.g. `docs/...`, `fix/...`)
and contains no internal Paperclip ticket id or instance-derived details
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [ ] All Paperclip CI gates are green
- [ ] Greptile is 5/5 with no open P2s, recommendations, or follow-ups
- [x] I will address all Greptile and reviewer comments before
requesting merge

🤖 Generated with [Claude Code](https://claude.com/claude-code)

---------

Co-authored-by: Claude Opus 5.5 <noreply@anthropic.com>
2026-11-07 09:27:14 -06:00
DottaandClaude Opus 5.5 a94881d1a7 fix(heartbeat): save a comment refused by a temporary hold and route post-quarantine input to its own gate (#19829)
## Thinking Path

> - Paperclip is the open source app people use to manage AI agents for
work
> - A user's follow-up comment or Retry must be delivered once,
eventually, even when a temporary company admission hold (accounting
still settling) is active
> - #19741 kept claimed runs queued through such a hold and woke held
work when it cleared
> - A restart-chaos wave still lost a comment, because its wake was
refused before admission and written as a terminal skip
> - The same wave left a Retry waiting forever for a stop record of a
process that never existed
> - This pull request saves the refused comment as a deferred receipt,
and routes input after a pre-launch quarantine failure to the
quarantine's own gate
> - The benefit is that the comment is delivered after the hold, and the
task asks for the action that actually unblocks it instead of offering a
Retry that can never start

## Linked Issues or Issue Description

Refs #19741 and #19702.

**What happened?**
In a restart-chaos wave, a failed run's accounting held the company for
600 s.
1. A user commented while the task's run was live. The enqueue budget
gate refused the comment's wake before it reached the deferral behind
the live run. Because it was a user request with no saved receipt, it
was written as `skipped` (`budget.blocked`). The live run finished
without it and the task ended `done`, so the comment was lost.
2. A Retry created a run that the native cleanup-quarantine fence
refused before it requested any runner launch
(`native_session_cleanup_quarantined`, no process events). A second
Retry then waited with `process_identity_missing` ("The previous run has
no verified stop record") for a process that never existed. The task
kept offering Retry, and that Retry could never start.

**Expected behavior**
A comment refused by a temporary hold stays saved and is delivered once
later. Input after a run that was refused before launch is handled by
the quarantine gate: Retry is not offered (send a new message), and a
new message gets the verified-stop check of the previous provider
session.

## What Changed

- `heartbeat/queue.ts`: when the enqueue budget gate refuses a user's
comment wake and the block is temporary (not a reached hard stop, per
`isBoardOwnedBudgetBlock`), the wake is saved as a
`deferred_issue_execution` receipt. The receipt carries the comment ids
and an `executionWait` of `budget.blocked`, and the gate notifies the
deferred-receipt worker and throws `PersistedExecutionWaitRefusal`. It
is not written as `skipped`. Normal promotion (when the live run ends)
and #19741's hold-release wakeups deliver it.
- `native-local-process-stop.ts`: new `nativeRunRefusedBeforeLaunch`. It
returns true for a failed native run with
`native_session_cleanup_quarantined`, no recorded process, and no
launch-request or identity event.
- `explicit-native-continuation.ts`: such a run passes the
process-identity check, so the existing quarantine branch decides. A
Retry gets `cleanup_quarantined` (shown with `canRetry: false` and "send
a new message"). A new message gets
`verifyStoppedNativeSessionForContinuation`. Any launch request or
identity record keeps the original stop proofs.

- `native-session-executor.ts`
(`verifyStoppedNativeSessionForContinuation`): when the source has no
process record and no launch event, the verifier relies on the previous
owner's stop evidence. Before this change it required the source to
share the owner's process identity, so a new message stayed held even
after the owner stopped. A source that carries a process identity must
still match the owner exactly.

## Verification

Each new test fails on `master` and passes with this change, on embedded
Postgres:
- `server/src/__tests__/heartbeat-held-comment-wake.test.ts`: a comment
whose wake the hold refuses at enqueue is saved with a `budget.blocked`
wait and is not skipped. It is delivered exactly once after accounting
settles.
- `server/src/services/explicit-native-continuation.test.ts`:
- A run refused by the quarantine before launch routes a new message to
the quarantine's stop verification and a Retry to `cleanup_quarantined`.
These failed on `master` with `process_identity_missing`.
- Guards (green on both): a quarantined run that requested a launch, and
another failure without a process record, still require
`process_identity_missing`.
- `server/src/services/quarantined-task-retry.test.ts`: a never-launched
quarantined source is certified once the previous owner has stopped (red
on `master`). It stays held if the source requested a launch or the
owner is still running. All 31 tests pass, and the `stopped native
conversation physical cleanup` suite passes (46).
- Related suites pass locally (6 files, 620 tests): explicit native
continuation, held comment wake, queued comments routes, comment wake
batching, refused assignment wake, deferred receipt work. Two
`deferred-execution-receipt-work` tests failed once under parallel load
and passed when run alone.

## Risks

- The saved-comment path applies only to user comment wakes refused by a
temporary budget hold. Hard stops, system wakes, case handoffs, durable
chat requests, and existing saved receipts are unchanged.
- The pre-launch rule is limited to the quarantine failure code with no
launch evidence. Every other missing process identity still requires the
existing stop proof.

## Model Used

- Claude Opus 5.5 (`claude-opus-5-5`), Anthropic, run as an agent in
Claude Code with tool use (shell, file editing, local test execution,
kept restart-chaos instance inspection).

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have searched GitHub for duplicate or related PRs and linked
them above
- [x] I have either (a) linked existing issues with `Fixes: #` / `Closes
#` / `Refs #` OR (b) described the issue in-PR following the relevant
issue template
- [x] I have not referenced internal/instance-local Paperclip issues or
links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip`
URLs)
- [x] My branch name describes the change (e.g. `docs/...`, `fix/...`)
and contains no internal Paperclip ticket id or instance-derived details
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [ ] All Paperclip CI gates are green
- [ ] Greptile is 5/5 with no open P2s, recommendations, or follow-ups
- [x] I will address all Greptile and reviewer comments before
requesting merge

🤖 Generated with [Claude Code](https://claude.com/claude-code)

---------

Co-authored-by: Claude Opus 5.5 <noreply@anthropic.com>
2026-11-07 08:54:14 -06:00
DottaandPaperclip 2e52dfa864 fix(slack): retain DM thread tasks after completion (#19486)
## Thinking Path

> - Paperclip manages AI agents and their work.
> - Slack conversations store that work in tasks and comments.
> - A native thread must keep its task when work finishes.
> - The server treated all DMs as linear conversations.
> - A reply in a completed DM thread therefore started a new task
without its earlier comments.
> - This pull request uses the native thread identity for task
continuity.
> - People can continue the same work with its saved context.

## Linked Issues or Issue Description

**What happened?**

A reply in a Slack DM thread created a new task after the preceding task
was Done or Cancelled. It also created a new task when the saved
conversation was completed. The new task lacked earlier comments.

**Expected behavior**

A native Slack thread keeps one task in channels and DMs. Later replies
retain earlier user and agent comments. Top-level DMs keep their
existing task generation rules.

**Steps to reproduce**

1. Start work in a Slack DM thread.
2. Mark its task Done.
3. Reply in the same thread.
4. Before this fix, the reply creates another task.

**Paperclip version or commit**

Reproduced from master at eb5c24b61c.

**Deployment mode**

Built from source. Tests use local PostgreSQL and provider fixtures.

Related PR: #16151 covers the DM mention exemption. This fix preserves
that behavior. GitHub searches found no duplicate fix for completion
routing.

## What Changed

- Detect Slack native thread roots in the Slack module.
- Classify native DM threads as persistent threads for task routing.
- Select the resource type from the actual DM destination. Keep DM
access checks.
- Preserve DM task controls. Select the latest DM task even after
completion. Require a delivered control receipt before an explicit new
task generation.
- Add completion, duplicate, saved-history, separate-root, Idle, and
explicit-control regressions.
- Document the task boundary. Correct only the inaccurate DM-thread
statement in the existing feature recipe.

## Verification

- Before the production edit, the new PostgreSQL regression failed in
all three threaded-DM completion cases: two conversations existed
instead of one. The channel-thread and top-level-DM controls passed.
- The initial eight routing cases passed. CI then found five existing
slash-control failures. All five reproduced locally. Greptile reported
the same regression at 4/5.
- The first correction passed all 16 focused PostgreSQL cases. Secondary
review then found that slash commands skipped Done, Cancelled, and
completed DM tasks. Four new cases failed before the lookup change.
Commit 23ff4f04f passed all 20 focused cases, including status, explicit
new/close, delivered receipts, and a new task generation. The original
same-thread continuity cases still pass.
- Command: `pnpm exec vitest run
server/src/__tests__/chat-channels.integration.test.ts -t 'preserves
Slack thread history across completion|keeps separate Slack DM thread
roots|returns two answered Slack turns to Idle|binds Slack DM slash
controls|treats D-prefixed Slack status|serializes duplicate Slack
admission with an owned provider-reply settlement|suppresses a queued
provider reply when destination reach|continues to accept authenticated
Slack slash close/new'`.
- Map validation and `git diff --check` passed. Map validation proves
structure only.
- All 107 neighboring Slack adapter, SDK runtime, and receipt tests
passed across three files.
- The initial complete server typecheck passed with
`PAPERCLIP_TYPECHECK_LOW_MEMORY=1 pnpm --filter @paperclipai/server
typecheck`, including all three test-tree shards.
- Full local recursive typecheck and build stopped because this
workspace has no `cargo`. A separate default server typecheck was killed
under concurrent memory load; its lower-memory rerun passed. The broad
local test run was interrupted to free memory, so no full-local-suite
pass is claimed. The complete server typecheck passed again for
correction 367b6f9b3, including all three test-tree shards. The [full CI
pipeline](https://github.com/paperclipai/paperclip/actions/runs/42250458200)
passed for exact head 367b6f9b3f. This
includes typecheck, build, all chat and other test lanes, browser E2E,
Runner, and aggregate verify. The first CI run passed broad typecheck,
build, E2E, Runner, and other test groups, but its chat failures remain
recorded above.
- The initial regression launch could not load the unbuilt plugin SDK.
It ran after building the required workspace dependencies. A test-only
resource assertion was corrected to read persisted DM resources, which
the settings list omits. The completed-conversation case preserves an
existing review status.
- The initial correction test used a follow-up timestamp older than the
delivered control. The chronology gate correctly rejected it. A current
provider timestamp now verifies the new generation without weakening
that gate.
- Greptile's map finding was addressed by removing recipe expansions and
all agent-access map changes. Both review threads have replies and are
resolved. Greptile reviewed exact head
367b6f9b3f at [5/5 with zero new
findings](https://github.com/paperclipai/paperclip/pull/19486#issuecomment-6689117840).
The secondary Paperclip Review rated that head 4/5 and found the
completed-task slash lookup error. Commit 23ff4f04f fixes this finding.
Greptile and Paperclip Review both rate head
23ff4f04f6 at 5/5. All three review
threads are resolved. The [full CI
pipeline](https://github.com/paperclipai/paperclip/actions/runs/42255926149)
now passes on this exact head. This includes typecheck, build, all test
lanes, browser E2E, Runner checks, Canary Dry Run, and aggregate verify.
All checks are terminal: 54 success, 1 neutral, and 3 skipped. Snyk also
passes. The PR has no merge conflict.
- The complete server typecheck passed again on 23ff4f04f, including all
three test-tree shards.
- The new test first asserted the conversation-list state. That API
displays terminal tasks as completed before the control is sent. The
test now reads stored binding state to check that completion waits for
the delivered receipt.
- No live Slack send or deployment was performed.

## Risks

- Native DM threads now reopen the existing task after Done or
Cancelled. Explicit new/close controls still release the binding after
their response is delivered. Top-level DMs still start new generations
after completion.
- Existing split tasks stay separate. Future replies use the latest
saved binding. This change does not merge old tasks or copy surrounding
DM history into a newly created thread.
- No schema, credential, provider scope, or permission changes are
required.

## Model Used

OpenAI Codex, based on GPT-6, with reasoning, tool use, repository
editing, and code execution. The runtime does not expose a more precise
serving model ID or context-window size.

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have searched GitHub for duplicate or related PRs and linked
them above
- [x] I have either (a) linked existing issues with `Fixes: #` / `Closes
#` / `Refs #` OR (b) described the issue in-PR following the relevant
issue template
- [x] I have not referenced internal/instance-local Paperclip issues or
links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip`
URLs)
- [x] My branch name describes the change (e.g. `docs/...`, `fix/...`)
and contains no internal Paperclip ticket id or instance-derived details
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [x] All Paperclip CI gates are green
- [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups
- [x] I will address all Greptile and reviewer comments before
requesting merge

---------

Co-authored-by: Paperclip <noreply@paperclip.ing>
2026-11-07 08:35:29 -06:00
DottaandClaude Opus 5.5 8373ae905a fix(accounting): settle a never-started run whose recorder bound an empty fence map (#19826)
## Thinking Path

> - Paperclip is the open source app people use to manage AI agents for
work
> - Budgets hold new work while a native run's final usage receipt is
outstanding
> - A run that never started a provider has nothing to account. #19700
added a rule that settles such a run at once.
> - In restart chaos waves, Retry runs that failed before any provider
start still held company admission for up to 10 minutes
> - This pull request fixes the condition that stopped the rule from
matching
> - The benefit: a failed run that provably never started a provider
settles at once and never holds other work

## Linked Issues or Issue Description

Refs #19700, #19724.

**What happened?**
An OpenCode Retry run failed at once with
`native_session_cleanup_quarantined`. It had no model, no usage
receipts, no process start and no provider events, yet it held company
admission for the full 600-second closure bound. Two more waves had the
same shape, with holds of 309 and 324 seconds.

**Root cause**
`nativeProviderWorkNeverStarted` (`run-cost-accounting.ts`) required
`usage_json.accountingReceiptSourceFences` to be absent.
`createRunUsageRecorder` binds every run with that key, as an empty map
`{}`, even when no earlier receipt source exists. So the rule never
matched a run that had a usage recorder. The run then waited for the
closure bound as a run whose receipt was still closing.

The restart-evidence check for the unpriced-usage exemption
(`budget-exposure.ts`, from #19724) had the same flaw: it treated the
presence of the key as restart evidence.

**Expected behavior**
A failed native run with no receipts, no replaced receipt source and a
process that never launched (or was verified stopped) settles at once
with no charge. A run whose provider might still be spending keeps
holding.

## What Changed

- `run-cost-accounting.ts`: the never-started rule treats an empty fence
map as "no replaced source". Only a non-empty map shows that provider
work began.
- `budget-exposure.ts`: restart evidence also requires a non-empty fence
map.
- `doc/SPEC-implementation.md`: documents the rule.

## Verification

- Red then green, `closed-native-receipt-accounting.test.ts`:
- "settles a quarantined Retry whose recorder bound an empty fence map
at once". This is the exact chaos row: failed,
`native_session_cleanup_quarantined`, terminal_failure finalization,
receipt sequence 0, empty fence map, no receipts, no process events.
- "does not count an empty fence map as restart evidence for a timed-out
closure".
- Existing tests still pass. A run with a recorded but unverified
process still waits for the bound. The restart-derived exemptions still
apply to runs with a non-empty fence map or a recovery transition.
- Local: `closed-native-receipt-accounting` (51), the budget suites,
`heartbeat-cost-accounting`, `adapter-cost-failure-paths`,
`native-stop-accounting` and `native-session-executor` all pass. Server
`tsc --noEmit` is clean.

## Risks

- Low. The change only narrows what counts as a replaced receipt source.
A run whose source was really replaced has a non-empty map and behaves
as before.

## Model Used

- Anthropic Claude Opus 5.5 (`claude-opus-5-5`), Claude Code agent with
tool use and code execution.

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have searched GitHub for duplicate or related PRs and linked
them above
- [x] I have either (a) linked existing issues with `Fixes: #` / `Closes
#` / `Refs #` OR (b) described the issue in-PR following the relevant
issue template
- [x] I have not referenced internal/instance-local Paperclip issues or
links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip`
URLs)
- [x] My branch name describes the change (e.g. `docs/...`, `fix/...`)
and contains no internal Paperclip ticket id or instance-derived details
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [ ] All Paperclip CI gates are green
- [ ] Greptile is 5/5 with no open P2s, recommendations, or follow-ups
- [x] I will address all Greptile and reviewer comments before
requesting merge

🤖 Generated with [Claude Code](https://claude.com/claude-code)

Co-authored-by: Claude Opus 5.5 <noreply@anthropic.com>
2026-11-07 08:15:49 -06:00
Dotta 3112e4c955 Verify original Dot OAuth authority for signed Cloud requests (#19819)
## Thinking Path

> - Paperclip manages AI agents and their work.
> - Dot uses a user OAuth grant to act in one company.
> - Cloud must use that original grant when it resolves a selected
user's identity.
> - A Cloud signature alone must not create user or board authority.
> - The tenant's OAuth owner must check the token and its current
restrictions.
> - This pull request adds a signed private HTTP boundary for that
check.
> - The result contains only the checked identity fields. It grants no
task or board access.

## Linked Issues or Issue Description

**Subsystem affected**

Server external-agent identity, public MCP OAuth, Cloud control
verification, and HTTP logging.

**Problem or motivation**

Cloud needs a private way to resolve the original Dot token for the
selected user, client, company and resource. The existing generic Cloud
control route creates an operator actor. That route is not the right
owner for this identity check.

**Proposed solution**

Add `POST /mcp/runner/oauth/cloud-principal`. Require the existing Cloud
signature and replay verifier. Bind the whole request to a new, closed
`mcp-dot:principal` action with a maximum 60-second lifetime.
Authenticate the original token once through the normal Dot OAuth owner.
Check current namespace authority before and after that call.

**Alternatives considered**

A Cloud-created grant or a board actor would change the authority owner.
Neither is used. The private route reuses the existing OAuth and Cloud
identity owners.

**Roadmap alignment**

This is a narrow boundary for the existing MCP and Cloud areas in
`ROADMAP.md`. It adds no work queue, public hosted profile, or provider
enablement.

Related public work: Refs #14846, #19427, #19750 and #19776. Searches
for the exact private path and action found no duplicate PR. The
matching private Cloud caller has merged. The current App head passed
its required checks and review.

## What Changed

- Add an original-token principal reader. Keep the original client,
selected user, company, resource, purpose, scope, membership and feature
restrictions.
- Add a 16 KiB raw JSON private route. Reject compressed, invalid UTF-8,
malformed and unknown-field bodies. Bind an ordered whole-body digest to
the signature and existing nonce fence.
- Compare the current stack, claim, instance, origin and connector
identity before and after OAuth. An absent owner or namespace fails
closed.
- Mount the route in normal `createApp` after hostname, runtime-claim
and standby checks, before session/actor work. Do not add it to generic
board-control routing.
- Keep private request and response logs content-free, including raw
buffers, headers, query data and reflected errors.
- Add controlled HTTP/privacy tests and a real normal-App
OAuth/Cloud-signer integration case. Document the machine-only contract
and correct the existing `assistant-connections/client-use` access
entry. No new capability ID or agent API entry is added. No schema,
lockfile, workflow, Runner, Muse or useful-task fixture changes belong
to this PR.

## Verification

- Current `70c03593`: normal module-boundary policy and all seven App
compiler programs passed. The public module factory has an explicit
portable Express return contract. Whole HTTP/log controls passed again:
30/30. The existing real paired OAuth/Cloud-signer/private HTTP case
then passed again on a fresh PostgreSQL fixture: 1/1, zero skipped. All
known child processes and five database connections closed; the final
independent SQL audit was empty.
- The original remote policy failure rejected an App import of a
module-internal path; dependent E2E/verify gates stopped on that
failure. The fix delegates through the public module API. A first local
declaration run reported TS2883 for its inferred return type; the
explicit public type fixed it. Original logs remain preserved. No
checker, compiler option, test body or authority check was weakened.

- The normal full App graph passed on the integrated source. The later
fixture-only repairs each passed the complete affected owning
program:405 entries, including 403 source roots. The remaining programs
and own dependency outputs carried only where their source was exact.
- Whole private HTTP/log files passed:30 tests, zero failures or skips.
The HTTP controls use a controlled OAuth owner with real signatures. The
log controls use the actual HTTP logger.
- The paired Cloud source passed its normal strict build and whole 26
signer/client/namespace and credential-error controls. These are
controlled caller tests, not provider tests.
- One normal-App paired case passed with a dedicated PostgreSQL
database. It used real DCR 201, PKCE, consent, token exchange and a
persisted unpaired grant; actual signed metadata publication and a
committed Cloud receipt; the real Cloud signer/client and actual App
HTTP; exactly-once authentication; refresh; current namespace
restrictions; and revocation. The Cloud registry/provider were the
existing controlled in-memory/Fake fixtures. Recorded inbound Hosts
matched, with zero metadata overflow. No grant, readiness or mirror ACK
was fabricated.
- The original principal helper's 21 controlled tests and two real-OAuth
tests passed before the HTTP slice. Those three files remained unchanged
through integration. They are separate source-scoped evidence, not an
extra combined run.
- Preserved failures: a helper import and test typing error were
corrected before the passed checks. An earlier suite failure did not
serialize its hook error and remains unexplained. Later runs captured a
missing normal managed-config initialization and HTTP 404 from the
loopback mapper. The fixture now calls the normal initialization owners
and uses the existing Host-preserving canonical HTTP adapter. All
original authority assertions and deadlines remain.
- Reproduce the local files with `pnpm --filter @paperclipai/server exec
vitest run src/modules/external-agents/cloud-principal-http.test.ts
src/modules/external-agents/cloud-principal-log.test.ts --maxWorkers=1
--no-file-parallelism`. The real integration file is
`server/src/__tests__/cloud-principal-normal-app.postgres.test.ts`; it
requires its explicit dedicated test DB and an own compiled matching
Cloud checkout.
- The normal `node scripts/check-maps.mjs` check passed for 35 areas and
192 capability IDs. This validates map structure, not business
acceptance. The later edits are documentation/map only; all executed
business source and own outputs from the paired case remained exact.
- Current-head remote CI passes: 59 successful checks and three
intentional skips. Greptile reviewed this exact head at 5/5 with no
findings or review threads. The prior Ponytail review was Ship 5/5 at
the earlier head; no current-head Ponytail turn is present, which is
nonblocking under the authorized review policy. The three
full-repository commands were not repeated locally; the focused normal
App graph and affected tests above passed, and required remote CI
supplies the broad gates. No deployed, provider-capacity, cold-wake or
full hosted lifecycle result is claimed.

## Risks

- This is a security boundary. Signature, current namespace and original
OAuth restrictions must continue to fail closed. The response gives
identity only; callers still need normal operation authority.
- The request carries the original token. The reserved route uses a
closed log projection on both accepted and refused requests. Privacy
regressions remain a material risk.
- Both repositories must agree on the action and digest contract. Older
code rejects the unsupported action; no fallback creates authority.
- This is a prerequisite private boundary. The remaining hosted
discovery, wake, capability, operation, event, retry/reactivation and
revocation lifecycle work, plus Muse, remains open. No profile or
capability is enabled here.
- No migration is needed. Rollback removes the private boundary and
paired caller; normal OAuth and Personal MCP remain with their existing
owners.
- The engineering documentation describes this private machine boundary
and its access restriction. No operator-facing feature is enabled.
Documentation for full hosted enablement remains with that later work.

## Model Used

OpenAI `gpt-6.1-sol` (Sol6.1), through Codex, produced the source and
tests with tool use and local compiler/test execution. A GPT-6-based
Codex coordinator reviewed the work. Its exact model ID is unavailable.
Context window sizes are unavailable.

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have searched GitHub for duplicate or related PRs and linked
them above
- [x] I have either (a) linked existing issues with `Fixes: #` / `Closes
#` / `Refs #` OR (b) described the issue in-PR following the relevant
issue template
- [x] I have not referenced internal/instance-local Paperclip issues or
links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip`
URLs)
- [x] My branch name describes the change (e.g. `docs/...`, `fix/...`)
and contains no internal Paperclip ticket id or instance-derived details
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [x] All Paperclip CI gates are green
- [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups
- [x] I will address all Greptile and reviewer comments before
requesting merge
2026-11-07 08:02:42 -06:00
DottaandClaude Opus 5.5 5eac099fbb fix(agents): batch independent follow-up questions into one card (#19634)
## Thinking Path

> - Paperclip is the open source app people use to manage AI agents for
work.
> - Agents ask users for input with the `request_human_input` tool or
the `ask_user_questions` interaction. Paperclip shows each call as one
question card.
> - In an onboarding walk, a Codex execution agent asked five
independent questions (name, menu and prices, contact, style, output).
It posted five cards, one after the other. Each card came 20-60 s after
the previous answer.
> - The tool description said: "For one question at a time, ask only the
next unanswered question and wait for its real answer." Agents read this
as a rule. The paperclip skill showed only a one-question example and
did not tell agents to batch.
> - No server cap exists. A question set accepts up to 64 questions.
> - This pull request changes the guidance. Agents now ask independent
inputs together in one card. They use a follow-up card only when a
question depends on an earlier answer. One-at-a-time stays available
when the user asks for it.
> - The benefit is fewer waits for the user: one card and one agent turn
instead of five.

## Linked Issues or Issue Description

**What happened?**
An execution agent asked a user five independent follow-up questions in
five separate question cards. Each card appeared only after the user
answered the previous card and the agent finished another turn (20-60 s
each).

**Expected behavior**
When an agent needs several independent inputs, it asks them together in
one multi-question card. The onboarding interview already does this ("1
of 4" pager).

**Steps to reproduce**
1. Complete onboarding on the Codex API path and hand off a task such as
"Create printable cake menu and logo".
2. Watch the execution agent's first turns.
3. See five sequential single-question cards.

**Paperclip version or commit**
master at 4938a930d6 (local dev server).

**Agent adapter(s) involved**
Codex (gpt-5.6-sol). The guidance is shared by all adapters that use the
Runner `request_human_input` tool or the `paperclip` skill.

## What Changed

-
`packages/paperclip-runner/src/protocol-actions/request-human-input.ts`:
replace the ambiguous "For one question at a time…" sentence. The new
text tells agents to ask independent inputs together in one questions
card. They use a follow-up card only when it depends on an earlier
answer. It keeps one-at-a-time for when the user asks for it.
- `skills/paperclip/SKILL.md` and
`skills/paperclip/references/api-reference.md`: add the same batching
rule to the human-input sections.
- `packages/mcp-server/src/tools.ts`: add the batching hint to the
`paperclipAskUserQuestions` tool description.
- Regenerated runner contracts (`semantic-tool-contracts.json`,
`protocol/manifest.json`, `native-execution-seeded.json`) and updated
the legacy MCP alias semantics in `spec/capability/mcp-tool-map.yaml`.
- New tests: `core-contracts.test.ts` (tool description) and
`paperclip-skill-utils.test.ts` (skill and API reference).

## Verification

Red on master (tests added, source unchanged):

```
packages/paperclip-runner: npx vitest run src/protocol-actions/core-contracts.test.ts -t batch
 × tells agents to batch independent questions into one card instead of asking them one by one
AssertionError: expected 'Create a durable human question or ap…' not to contain 'For one question at a time'
 Tests  1 failed | 20 skipped (21)

npx vitest run server/src/__tests__/paperclip-skill-utils.test.ts -t batch
 × tells agents to batch independent human-input questions into one card
AssertionError: expected ' For an open answer, use a text field…' to contain 'ask them together in one card'
 Tests  1 failed | 21 skipped (22)
```

Green after the fix:

```
packages/paperclip-runner: npx vitest run src/protocol-actions src/drivers/runner-tool-bridge.claude-schema.test.ts
 Test Files  4 passed (4)   Tests  46 passed (46)
npx vitest run server/src/__tests__/paperclip-skill-utils.test.ts            Tests 22 passed (22)
npx vitest run server/src/services/native-runtime/paperclip-runner-tool-authority.test.ts   Tests 41 passed (41)
node scripts/generate-semantic-contracts.mjs --check / generate-capability-contract --check / generate-semantic-action-catalog --check / generate-replay-goldens --check: current
```

`packages/mcp-server` has one failure ("allows create issue requests to
omit status…"). It also fails on master without this change, so it is
not related.

This is a guidance change. The automated check proves that the guidance
the agent receives tells it to batch. I did not run a live-model eval.

## Risks

- Low risk. The change is text only: tool descriptions and skill docs.
No schema, API, or storage change.
- An agent could put a dependent question into the same card. The text
tells agents to use a follow-up card for dependent questions.

## Model Used

- Claude Opus 5.5 (`claude-opus-5-5`) in Claude Code, with tool use and
code execution.

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have searched GitHub for duplicate or related PRs and linked
them above
- [x] I have either (a) linked existing issues with `Fixes: #` / `Closes
#` / `Refs #` OR (b) described the issue in-PR following the relevant
issue template
- [x] I have not referenced internal/instance-local Paperclip issues or
links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip`
URLs)
- [x] My branch name describes the change (e.g. `docs/...`, `fix/...`)
and contains no internal Paperclip ticket id or instance-derived details
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [ ] All Paperclip CI gates are green
- [ ] Greptile is 5/5 with no open P2s, recommendations, or follow-ups
- [x] I will address all Greptile and reviewer comments before
requesting merge

🤖 Generated with [Claude Code](https://claude.com/claude-code)

---------

Co-authored-by: Claude Opus 5.5 <noreply@anthropic.com>
2026-11-07 07:48:28 -06:00
DottaandPaperclip 8812c1941d perf(storage): overlap bounded S3 multipart payloads (#19817)
## Thinking Path

> - Paperclip is the open source app people use to manage AI agents for
work.
> - The storage service uploads large workspace snapshots through S3
multipart uploads.
> - The current uploader permits four requests but fills each streamed
body before it starts the next one.
> - Slow payload delivery therefore remains serial even when request
acknowledgements overlap.
> - This pull request fills bounded part buffers and sends those
payloads concurrently through the existing SDK streams.
> - This lets the four-request window carry payload data while it
retains backpressure and failure cleanup.

## Linked Issues or Issue Description

Related implementation: #18659. This fixes payload serialization within
that existing multipart owner. A search found no duplicate open storage
multipart fix.

**What happened?**

A controlled 24 MiB upload started part 2 only after part 1 had
delivered 99.22% of its bytes. The same sequence occurred for part 3.
The four-request cap overlapped acknowledgement waits but did not
provide useful overlap during payload delivery.

**Expected behavior**

Up to four part payloads can travel at the same time. Memory stays
bounded. Exact lengths, bytes, ordered completion, cancellation and
abort cleanup still apply.

**Steps to reproduce**

Run the new slow-consumer test against the previous uploader. Hold all
part consumers until four requests have started. The previous
implementation starts one request and the assertion fails. The revised
implementation starts four requests and then verifies every payload hash
and byte count.

**Paperclip version or commit**

Reproduced on the source from `585c885168`. The final branch is rebased
onto `ae1f781cac`.

**Deployment mode**

The S3 storage provider. Local tests use fake credentials and an owned
loopback HTTP server. No hosted writes were made.

## What Changed

- Share a 32 MiB part-buffer allowance across uploads. Stream up to four
buffered payloads concurrently through the existing SDK requests. When
the allowance is full, use the existing streaming path without an upload
queue.
- Keep the original streaming path for dynamic parts larger than 8 MiB.
This retains the provider part-count limit without larger buffers.
- Extend the existing tests for concurrent slow consumers, the shared
memory window and cancellation in both paths. Verify allowance release
after source and request failures. Check part identity independently of
acknowledgement order.

## Verification

- Baseline RED: the new controlled test failed with one request started
instead of four. Its cleanup released and awaited the upload.
- Final review-repair head: 26/26 tests passed across
`storage-s3-multipart.test.ts`, `storage-s3-failure-diagnostics.test.ts`
and `storage/config.test.ts`.
- These tests include the real S3 HTTP client, exact payload hashes and
ordered parts, excess and truncated input, early acknowledgements,
sibling failure, abort cleanup, stalled input and the bounded four-part
window.
- Strict server TypeScript, module boundary checks and `git diff
--check` passed on the final review-repair head. CI then caught an
optional SDK `Key` type in the new test fixture. A focused test
typecheck reproduced both TS2345 errors. The fixture now binds its
required controlled key; that typecheck and the named shared-window
regression pass. The uploader source is unchanged by this repair.
- Controlled 24 MiB comparison: 640.58 ms before and 393.88 ms after.
The new requests started within 7.37 ms. Both runs used 1 ms per
consumed chunk and 250 ms acknowledgement delays. This measures the
controlled fixture only. It does not predict hosted S3 throughput or
total migration time.
- Review RED: two blocked uploads consumed 64 MiB of source chunks under
the original per-upload buffer scheme. The new shared allowance kept the
source reads within 32 MiB plus stream lookahead. Three new controls
passed for concurrent uploads and allowance release after source/request
failures.
- The first treatment run passed 12/13 cases. Its remaining test assumed
completion order matched part order. The test now binds lengths to part
numbers and still checks the ordered completion request. An initial
typecheck setup attempt lacked the built plugin SDK; the canonical
dependency build and final typecheck passed.

- Final head `fbadf4f1cf427b896bbc255ffe2e7ad480ce06d3`: [full
CI](https://github.com/paperclipai/paperclip/actions/runs/42373571408)
passed, including build, test shards, Typecheck + Release Registry and
`ci / verify`. All 61 reported contexts are terminal: 56 success, four
skipped and one neutral review. Greptile and Paperclip both gave a fresh
5/5 for this head. No review threads remain open.

## Risks

- Multipart uploads share at most 32 MiB of live part buffers per
process, plus existing stream and source-chunk overhead. The previous
path used smaller streaming buffers. With no buffer allowance left, an
upload uses the original streaming path. It does not wait for a shared
queue.
- Objects whose dynamic part size exceeds 8 MiB retain the current
serial payload behavior. No new object-size ceiling is introduced.
- Request bodies remain non-replayable streams. The SDK retry policy,
multipart protocol, cleanup policy, object format and public storage API
remain unchanged.
- No disk spool or cache is added. All current-head CI gates and both
reviews passed.

## Model Used

OpenAI `gpt-6.1-sol`, with reasoning, tool use and code execution. The
context window size is not exposed by this session.

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have searched GitHub for duplicate or related PRs and linked
them above
- [x] I have either (a) linked existing issues with `Fixes: #` / `Closes
#` / `Refs #` OR (b) described the issue in-PR following the relevant
issue template
- [x] I have not referenced internal/instance-local Paperclip issues or
links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip`
URLs)
- [x] My branch name describes the change (e.g. `docs/...`, `fix/...`)
and contains no internal Paperclip ticket id or instance-derived details
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [x] All Paperclip CI gates are green
- [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups
- [x] I will address all Greptile and reviewer comments before
requesting merge

---------

Co-authored-by: Paperclip <noreply@paperclip.ing>
2026-11-07 06:58:10 -06:00
DottaandPaperclip 384fa2b7be Allow context compaction while Agent Chat waits (#19801)
## Thinking Path

> - Paperclip manages agents and their work.
> - Agent Chat can wait for a user between useful turns.
> - The task Properties panel already lets that user request context
compaction.
> - The queue treated that maintenance request as an ordinary wake and
refused it while the chat waited.
> - Compaction must maintain that session without starting a new
conversation turn.
> - This change admits the authenticated request, preserves the waiting
state during execution, and prevents competing requests from saving
extra maintenance work.
> - Ordinary and unauthorized wakes remain blocked.

## Linked Issues or Issue Description

Refs #19378, which introduced the existing Compact now action. Refs
#19377, whose review identified this independent queue admission gap.
Searches for `context_compaction` with `waiting` and `Compact now` with
`waiting` found no existing fix for this admission bug.

**What happened?**

An owner clicks Compact now for a waiting Agent Chat conversation. The
real compaction service reaches the heartbeat queue, receives no run,
and reports that compaction did not start.

**Expected behavior**

The authenticated owner can request one separate compaction run while
the chat waits. The request must keep its existing actor, task, agent,
budget, and execution checks. Ordinary waiting-chat wakes must stay
blocked.

**Steps to reproduce**

1. Use an open Agent Chat conversation whose agent supports compaction.
2. Wait until the conversation is waiting for its owner.
3. Request Compact now from the task Properties panel.
4. Observe the refusal before this fix. The new database regression
calls the real compaction service and queue to reproduce it.

## What Changed

- Admit only the existing complete manual compaction envelope. Require a
user actor, no coalescing, the compaction intent, and matching nonempty
request IDs.
- Preserve the waiting conversation state, session generation, reply
boundary and unanswered questions in the existing conversation
preparation owner.
- Recheck active and deferred maintenance under the existing issue
admission lock. Competing clicks cannot save a second maintenance
request.
- Add execution coverage with and without a pending question. Add
concurrent admission and deferred-request controls, including admission
after the pending receipt is cancelled. Keep the existing authorization
and ordinary conversation controls.

## Verification

- The original service-to-queue request failed before the admission fix.
- The execution regression then caught the review finding: compaction
succeeded, but both waiting-state controls failed. The same complete
controls passed after the conversation preparation fix.
- A real concurrent request test recorded two durable maintenance
receipts before the atomic admission fix. It counts deferred authority
as well as admitted runs.
- Current integrated candidate: normal current Runner core and surface
TypeScript exports passed. All seven normal App typecheck programs
passed. The whole queue/execution suites passed 86/86, the whole
context-compaction suite passed 5/5, and 11 selected ordinary
conversation controls passed. There were 102 actual passes; the 29
unselected conversation cases are not counted as passes.
- Database controls use fresh dedicated PostgreSQL 17 databases, Node
24, one test worker and pools capped at four. Private fixture adapters
use the existing dedicated database and normal migrations. They keep
test bodies, assertions and time limits intact.
- Earlier fixture and setup failures remain recorded separately from
product failures. These include an omitted external URL, an invalid
closed-task fixture, a missing crypto import, an incorrect
result-envelope matcher, and an unavailable test-library helper. Each
was corrected at its owning boundary. A test-output text matcher also
missed Vitest's abbreviated failure; the raw assertion stack and failure
were retained.
- Local session tests exercise the actual admission, native Runner
lifecycle, accepted result and persisted conversation state through the
supported test backend. They do not prove live provider compaction, UI
rendering or deployed suspension.
- Exact-head remote CI passed: 59 successful checks, three intentional
skips and one neutral check. Greptile and Ponytail both reviewed this
head at 5/5 with no actionable findings. Ponytail explicitly marked it
Ship.
- Master advanced during review. A local merge evaluation preserves
every unrelated master change and all four PR files. The current App
programs and all three execution controls passed again on that projected
squash tree to check the workspace-finalization seam.

## Risks

The change affects admission and preparation for one maintenance
request. A broad exception could start ordinary work or reopen a waiting
chat. The request therefore keeps the complete existing manual envelope
and authorization checks. Conversation preparation still checks the
session generation. The existing issue lock owns duplicate admission.
There is no new timer, database migration or provider protocol.

## Model Used

OpenAI Codex based on GPT-6 managed the change and reviewed the shared
queue fix. OpenAI `gpt-6.1-sol` authored the focused regression
coverage. Both used reasoning, repository tools and local code
execution. The runtime did not expose the context-window size.

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have searched GitHub for duplicate or related PRs and linked
them above
- [x] I have either (a) linked existing issues with `Fixes: #` / `Closes
#` / `Refs #` OR (b) described the issue in-PR following the relevant
issue template
- [x] I have not referenced internal/instance-local Paperclip issues or
links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip`
URLs)
- [x] My branch name describes the change (e.g. `docs/...`, `fix/...`)
and contains no internal Paperclip ticket id or instance-derived details
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [x] I have updated relevant documentation to reflect my changes (the
existing Compact now documentation remains accurate; no new
configuration is added)
- [x] I have considered and documented any risks above
- [x] All Paperclip CI gates are green
- [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups
- [x] I will address all Greptile and reviewer comments before
requesting merge

---------

Co-authored-by: Paperclip <noreply@paperclip.ing>
2026-11-07 05:11:44 -06:00
795ad16c1f fix(server): bound the shutdown steps before the run drain (#19165)
Bound initial shutdown waits and finish workspace repairs before teardown.

Share a 20-second budget between waits before the heartbeat run drain.
Retain the original workspace recovery stop promise and join it after the
run drain and finalizers, before application and database teardown. Keep
that join for hot restart when the run drain is skipped. Log step and
drain durations and bound telemetry flush separately after the drain.

Verification: all 154 tests across the three relevant shutdown/startup
suites and every server source/test typecheck layer passed. Both actual
server lifecycle variants reproduce premature teardown without the fix.
All applicable CI passed and exact-head Greptile Apex scored 5/5.

Co-Authored-By: Devin Foley <devinfoley@users.noreply.github.com>
Co-Authored-By: Paperclip <noreply@paperclip.ing>
2026-11-07 02:24:23 -08:00
Devin FoleyandPaperclip bf12b2d8ad fix: retry reviewed chat setup after temporary contention (#19787)
Retry reviewed chat preparation with the original accepted input.

Bound retries for authorization proof waits that expire before provider
work. Preserve the original answer receipt and queue later wakes
separately. Keep plan confirmation semantics by assigning the interaction
marker only to question answer delivery and legacy question payloads.

Verification: 433 tests across four backend suites, all 17 project-chat
browser tests, and all server source/test typecheck layers passed. The
plan approval regression was reproduced on the previous head before the
fix. All applicable CI passed and exact-head Greptile Apex scored 5/5.

Co-Authored-By: Paperclip <noreply@paperclip.ing>
2026-11-07 02:14:42 -08:00
af0fe8fe81 Keep personal MCP connections functional while idle tenants sleep (#19427)
## Thinking Path

> - Paperclip manages work for AI agents.
> - Personal MCP connections should remain enabled while an idle tenant
sleeps.
> - Unfinished OAuth, transfer and delivery work must retain its owner
and deadline.
> - Cloud can receive bounded metadata and incoming work while the
tenant remains the company-scoped authorizer.
> - Current identity, revision and delivery acknowledgments establish
when ownership has transferred.
> - This change preserves useful wake, retries and revocation while
making settled ownership inspectable without writes.

## Linked Issues or Issue Description

Refs: #19377 and #19750. Hosted companion:
[paperclip-cloud#1217](https://github.com/paperclipai/paperclip-cloud/pull/1217).

**What happened?** Enabled personal MCP grants and subscriptions could
keep an otherwise idle tenant awake. Ignoring those records would lose
discovery, authorization, delivery and revocation obligations.

**Expected behavior** Unconsumed authorization codes, device requests,
file handoffs and delivery work retain their original deadlines. Settled
connections remain enabled and become quiet after the current external
owner acknowledges responsibility. Incoming useful work resumes normal
authorization and delivery; revocation still takes effect for the
current company.

**Steps to reproduce** Complete normal PKCE/device consent and company
selection, synchronize client/device and revocation state, retain the
connection while idle, then exercise useful tools/events and revocation.
Sleep eligibility requires current incoming/deadline ownership
throughout.

## What Changed

- Add bounded signed client/device metadata and revocation
synchronization with exact revision, identity and ACK checks, startup
recovery and finite legacy-device cutover.
- Preserve company selection, authorization and operation identity.
Register grant work before its INSERT in the same transaction; retain
rollback, expiry and retry behavior.
- Require current managed identity/resource before hosted publication.
Receipt-cleared re-enable must obtain a fresh source ACK before device
creation.
- Reuse read-only settings and inspection budgets; connect MCP owners to
normal startup, drain and shutdown.
- Bound metadata pages and the actual signed request body while
preserving the default limits of other operations.
- Generate migration 0440 after the merged Legacy migration. Preserve
all 438 existing executable migrations and the journal prefix; retain
the normal five newest snapshots.
- Preserve the merged transaction-owner forwarding and regression
coverage from #19750 through normal ancestry integration.

## Verification

- Current own Shared/SDK, database, eval-kernel and Runner builds
passed, together with all seven normal application TypeScript programs.
Missing generated package exports/workspace links were restored through
normal setup; the original setup failures were retained. No source,
compiler option, test assertion or timeout was weakened.
- Normal migration generation changed only the five intended MCP tables;
its SQL is byte-identical to the reviewed MCP delta. Fresh reference
databases and both retained master/Muse histories upgraded through 0440,
preserving historical hashes, row fields, schema and idempotence. Direct
assertions cover the Legacy null default and MCP null/zero defaults. Two
selected history cases passed; the other 21 database cases were
unselected.
- All six current MCP lifecycle cases passed with zero skips: normal
PKCE approval intent, ACK recovery after outage, mutation during
publication, disable/re-enable with original expiry, company-deletion
rollback/commit and key rotation.
- All 81 checks in five current whole files passed with zero skips:
OpenAPI 34, read-only settings 2, diagnostic catalog 25, PostgreSQL
diagnostics 7 and dependency scheduling 13. PostgreSQL fixtures ran
normal migrations before test imports.
- Earlier canonical proof at App `cd1c8c6` / Cloud `9f67531` includes
real 60-second rate and three 15-second quiet windows, useful work and
three revokes. Later paired proof at App `43af514` / Cloud `914eb0f`
plus its reviewed candidate includes normal DCR, PostgreSQL metadata, a
144,017-byte signed publication, actual ACK, cap/default-413 controls
and a real 15-second quiet window. The relevant producer/signing/wire
inputs remain byte-identical in this integration; shared changes are
qualified above. These remain source-scoped observations, not a fresh
full canonical run on the integrated tree.
- All known test owners, process groups and OS sockets closed; an
independent final PostgreSQL audit found no remaining test sessions. One
dependency-test trace recorded 46 opens and 45 close events. Its cause
is unknown; this is not claimed as proof of graceful closure.
- Fresh exact-head remote checks passed: 59 successful and 4 skipped
contexts, with a complete current 5/5 Greptile review and all seven
review threads resolved. Targeted local checks do not constitute a new
whole-repository test run.

## Risks

App and Cloud must agree on identity, revision, namespace, deadlines and
revocation. Partial rollout, unavailable authority or missing ACK must
retain awake debt. Shared startup/shutdown and settings changed since
the earlier canonical profile, so historical observations carry only
within their stated source scope. No deployed Railway/Neon suspension,
Cloud alarm, savings or complete hosted Dot/Muse acceptance is claimed.

## Model Used

OpenAI `gpt-6.1-sol` produced code and verification, with a Codex
coordinator reviewing and integrating the changes. The coordinator's
exact runtime model ID and context-window sizes were not exposed.

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have searched GitHub for duplicate or related PRs and linked
them above
- [x] I have either (a) linked existing issues with `Fixes: #` / `Closes
#` / `Refs #` OR (b) described the issue in-PR following the relevant
issue template
- [x] I have not referenced internal/instance-local Paperclip issues or
links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip`
URLs)
- [x] My branch name describes the change (e.g. `docs/...`, `fix/...`)
and contains no internal Paperclip ticket id or instance-derived details
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [x] All Paperclip CI gates are green
- [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups
- [x] I will address all Greptile and reviewer comments before
requesting merge

---------

Co-authored-by: Paperclip <noreply@paperclip.ing>
Co-authored-by: Codex <noreply@openai.com>
2026-11-07 02:12:48 -06:00
DottaandClaude Opus 5.5 7475577cdb fix(daytona): keep a runner sandbox alive through the controller reconnect grace (#19754)
## Thinking Path

> - Paperclip is the open source app people use to manage AI agents for
work
> - A remote agent run executes in a Daytona sandbox and keeps working
while the Paperclip server restarts
> - The server reattaches that runner within a 7-minute reconnect grace
> - Daytona stops an idle sandbox after its `autoStopInterval`, and it
counts only SDK and lifecycle calls as activity
> - With the server down, nothing touches the sandbox, so a 5-minute
auto-stop kills the runner before the server returns
> - This pull request makes the host tell the provider its reconnect
grace, so Daytona never auto-stops a runner sandbox inside that grace
> - The benefit is that a controller outage of up to 7 minutes no longer
turns a healthy remote run into a blocked task

## Linked Issues or Issue Description

Refs #19199 (the same floor for the warm runner idle window). Refs
#19741 (follow-up delivery through restarts; no overlap).

**What happened?**
A restart-chaos wave on Daytona killed the server for 4m51s while a
per-turn remote run was active. The environment used `autoStopInterval:
5`. The last sandbox activity was at 06:09:16. The server came back at
06:14:19 and then crashed again. At 06:15:21 recovery called the
sandbox. The plugin found it not started and started it again. The
runner identity marker was still on disk, but its process was gone:
`native.remote_runner_recovery_failed {stage: process_verification,
reason: process_not_running}`, then
`runner_remote_process_identity_unavailable`. The task went from done to
blocked. An earlier wave showed the same failure after a 4m45s outage.

**Expected behavior**
A sandbox that holds a live remote runner survives any controller outage
up to the reconnect grace. The server reattaches the runner and the run
continues.

**Steps to reproduce**
1. Create a Daytona environment with `autoStopInterval: 5` and a
`paperclip_runner` agent.
2. Start a remote run and kill the server for more than 5 minutes (less
than 7).
3. Restart the server. Recovery reports `process_not_running` and the
task becomes blocked.

## What Changed

- `server`: add `resolveRunnerReconnectGraceMsForRun`. It returns
`REMOTE_RUNNER_RECONNECT_GRACE_MS` for `paperclip_runner` on a sandbox
environment.
- `server`: forward `runnerReconnectGraceMs` to the provider worker on
lease acquisition and on the recovery reattach resume. It uses the same
provider-only path as `warmRunnerIdleTimeoutMs`. It is not lease
identity, lease metadata, or saved environment config.
- Daytona plugin: the effective auto-stop is at least the largest host
floor (warm idle window or reconnect grace) plus 5 minutes. With the
current grace this is 12 minutes. The plugin applies it at creation and
raises an older sandbox's shorter interval on resume (bounded, best
effort).
- Daytona plugin: keep the forwarded grace out of the normalized config.
Update the `autoStopInterval` manifest description.
- `doc/execution-semantics.md`: document the reconnect-grace floor next
to the warm floor.

## Verification

- Red/green Daytona plugin tests: `cd
packages/plugins/sandbox-providers/daytona && npx vitest run --config
vitest.config.ts`. The new cases failed before the fix (for example
`expected 120000 to be >= 720000`, and no `setAutostopInterval` call on
resume). All 605 tests pass after the fix.
- Server tests: `cd server && npx vitest run
src/__tests__/environment-run-orchestrator.test.ts
src/__tests__/environment-runtime.test.ts`. 247 pass. They prove
acquisition forwards the grace only for `paperclip_runner` on a sandbox,
that the reattach resume forwards it, and that it does not reach lease
metadata or saved config.
- `pnpm typecheck` for the plugin and `tsc --noEmit` for the server are
clean.
- `pnpm verify` asks for broad CI coverage because a doc changed.
Required CI supplies it.
- Evidence from the kept wave database: lease metadata shows
`autoStopInterval: 5`, `reuseLease: false`, `runnerLifecycleMode:
per_turn`. The run had no events between 06:09:16 and 06:14:19.

## Risks

- Cost: a runner sandbox that leaks (no cleanup) now auto-stops after 12
minutes instead of a shorter configured value. Cleanup still stops or
destroys released sandboxes. Explicit `0` and longer values are
unchanged. Auto-archive and auto-delete are unchanged.
- I did not inspect the sandbox state in Daytona directly. Cleanup
destroyed it before this investigation. The proof is the timing, the
lease config, and the `process_not_running` result after a restart that
kept the disk.
- No live Daytona replay ran.

## Model Used

- Claude Opus 5.5 (`claude-opus-5-5`), Anthropic, with tool use (shell,
file edit, code execution) in Claude Code.

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have searched GitHub for duplicate or related PRs and linked
them above
- [x] I have either (a) linked existing issues with `Fixes: #` / `Closes
#` / `Refs #` OR (b) described the issue in-PR following the relevant
issue template
- [x] I have not referenced internal/instance-local Paperclip issues or
links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip`
URLs)
- [x] My branch name describes the change (e.g. `docs/...`, `fix/...`)
and contains no internal Paperclip ticket id or instance-derived details
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [ ] All Paperclip CI gates are green
- [ ] Greptile is 5/5 with no open P2s, recommendations, or follow-ups
- [x] I will address all Greptile and reviewer comments before
requesting merge

🤖 Generated with [Claude Code](https://claude.com/claude-code)

---------

Co-authored-by: Claude Opus 5.5 <noreply@anthropic.com>
2026-11-07 01:36:18 -06:00
DottaandPaperclip e2c7d81067 fix(server): keep reply recovery off web startup critical path (#19769)
## Thinking Path

> - Paperclip is the open source app people use to manage AI agents for
work.
> - The server restores retained native replies during startup.
> - Fair reply recovery can admit more due work while an earlier group
remains active.
> - Waiting for that whole pass can hold web readiness on unrelated
retained replies.
> - This pull request tracks reply recovery with the existing background
startup owner.
> - The server can become ready while idle and shutdown still account
for that work.

## Linked Issues or Issue Description

Refs: #19726.

**What happened?**

The startup path awaited the native response worker's first pass. That
pass can remain active while fair dispatch admits later replies. A
controlled `startServer` regression stays in recovery until the held
reply pass finishes. A deployed backlog supported investigating this
boundary, but no captured runtime stack proves it caused the observed
startup delay.

**Expected behavior**

Retained reply recovery must keep its authority checks, retry deadlines,
and fair dispatch. Its completion must not be a condition for unrelated
web readiness. Active recovery must still block idle and be joined at
shutdown.

**Steps to reproduce**

Run the startup regression with a held native response worker promise.
Before this change, `startServer` does not complete. After this change,
startup reports ready, idle work remains active, and shutdown waits
until the promise settles.

## What Changed

- Track the initial native response pass with the existing heartbeat
scheduler work owner.
- Extend the actual startup wiring test to cover readiness, idle
accounting, worker stop, and shutdown join.
- Document the response recovery boundary for idle and readiness.

## Verification

- Mandatory agent preflight passed on macOS arm64 with Node 26.4.0.
- True RED: the new startup case failed because `startServer` had not
completed while reply work was held. The same case passed after the
change.
- Final head `279e97587b` passed the full startup test file: 123/123
tests.
- The unchanged real PostgreSQL later-page case passed. It holds 100 old
publication rows, publishes the independent 101st reply once while the
first pass remains pending, then verifies completion and no recurring
idle SQL.
- Final-head CI passed: 60 successful checks and 3 skipped checks,
including `ci / verify`. Fresh Greptile is 5/5 with no open threads.
- Server TypeScript check passed: `node node_modules/typescript/bin/tsc
-p server/tsconfig.json --noEmit`.
- Initial test-launch and missing generated SDK setup failures were
resolved before the regression ran. They are not RED or pass evidence.
- No deployment or live recovery action was performed for this PR.

Focused commands, from `server/`:

```sh
node ../node_modules/vitest/vitest.mjs run src/__tests__/server-startup-feedback-export.test.ts --maxWorkers=1 --no-file-parallelism
node ../cli/node_modules/tsx/dist/cli.mjs ../packages/db/src/test-postgres-command.ts -- node ../node_modules/vitest/vitest.mjs run src/services/native-runtime/native-response-publication-retry.test.ts -t 'publishes a later-page reply while older publication groups remain contended' --maxWorkers=1 --no-file-parallelism --hookTimeout 90000
```

## Risks

Web readiness can complete before retained reply recovery finishes. The
existing scheduler still owns errors, retries, scope checks, and
delivery authority. The existing idle tracker and shutdown join retain
in-flight work. Other startup recovery gates stay in place.

## Model Used

OpenAI Codex, `gpt-6.1-sol`, with reasoning, tool use, and code
execution. The context window size is not exposed.

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have searched GitHub for duplicate or related PRs and linked
them above
- [x] I have either (a) linked existing issues with `Fixes: #` /
`Closes: #` / `Refs: #` OR (b) described the issue in-PR following the
relevant issue template
- [x] I have not referenced internal/instance-local Paperclip issues or
links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip`
URLs)
- [x] My branch name describes the change and contains no internal
Paperclip ticket id or instance-derived details
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [x] All Paperclip CI gates are green
- [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups
- [x] I will address all Greptile and reviewer comments before
requesting merge

Co-authored-by: Paperclip <noreply@paperclip.ing>
2026-11-07 01:24:31 -06:00
DottaandClaude Opus 5.5 b03ea621c6 fix(environments): retry a teardown interrupted by server death at once (#19749)
## Thinking Path

> - Paperclip is the open source app people use to manage AI agents for
work
> - After a remote run, Paperclip destroys its provider sandbox. The
teardown first claims the lease with a 15-minute ownership fence, so no
other cleanup runs at the same time
> - #19696 made restart recovery end a fence when the claiming server
process is proven to have exited. It only does that for claims that
record the claimer
> - The run-release teardown and the stop-only teardown did not record
the claimer
> - When the server died during a run-release teardown, the sandbox
therefore stayed up until the 15-minute fence expired
> - This pull request records the claimer on those claims, and stops a
teardown attempt lost to a dead server from counting as a failed attempt
> - The benefit is that a restart during sandbox teardown destroys the
sandbox at the next startup sweep

## Linked Issues or Issue Description

**What happened?**
In a Daytona restart chaos wave, a run finished at 05:34:48. Its release
claimed the lease and called the provider, and a SIGKILL stopped the
server 2 seconds later. After restart the lease stayed `pending_cleanup`
with an in-flight claim. The sandbox was destroyed at 05:49:49, when the
15-minute claim fence expired. There was no provider error.

**Expected behavior**
A teardown interrupted by the server's death is retried by the next
startup sweep. It is not counted as a failed attempt. A real provider
error keeps the normal backoff.

**Steps to reproduce**
1. Release a run's sandbox lease with destroy, and hold the provider
call.
2. Stop the server during the provider call.
3. Restart. On master, the sweep skips the lease until the fence expires
15 minutes after the claim.

Refs #19696.

## What Changed

- `environment-runtime.ts`: the run-release teardown claim
(`destroyClaimedSandboxLease`) and the stop-only teardown claim save
`pendingCleanupController`, bound to the claim's attempt id, the same
way sweep claims do since #19696.
- `heartbeat/recovery.ts`: sweep claims mark that they counted an
attempt. When the sweep ends the fence of a lost claim, it gives that
attempt back, so a teardown lost to a dead server does not move toward
the cap or the long cooldown. Claims from other paths did not count an
attempt, so nothing changes for them.
- Workspace-repair and export-retry fences are unchanged. They protect
workspace work, not teardown.

## Verification

- Red, then green:
- `environment-runtime.test.ts` → "retries a run-release teardown at the
next sweep after the releasing server dies". The provider call is held
during `releaseRunLeases(..., "destroy")`, the claim is marked as from
an exited server, and a restarted sweep runs. On master the claim has no
controller record and the sweep skips the lease. With the fix, the sweep
destroys it at once and records attempt 1.
- `heartbeat-pending-cleanup-sweep.test.ts` → "does not count a sweep
attempt lost to a dead server as a failed attempt". On master the retry
is recorded as attempt 4; with the fix it is attempt 3 again.
- `environment-runtime`, `heartbeat-pending-cleanup-sweep`,
`sandbox-creation-operations` and `environment-routes` pass (367 tests).
`tsc --noEmit` for `server` passes.

## Risks

- The proof that a claimer exited is the same-PID-space proof from
#19696. A live, foreign or unidentified claimer keeps its fence.
- Giving back a counted attempt applies only after that proof. A
teardown that fails with a provider error still counts and backs off.
- No schema change. The new fields live in existing JSON metadata.

> For core feature work, check [`ROADMAP.md`](ROADMAP.md) first and
discuss it in `#dev` before opening the PR. Feature PRs that overlap
with planned core work may need to be redirected — check the roadmap
first. See `CONTRIBUTING.md`.

## Model Used

- Claude Opus 5.5 (`claude-opus-5-5`), Anthropic, via Claude Code with
tool use (shell, file editing, test execution). Extended reasoning
enabled.

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have searched GitHub for duplicate or related PRs and linked
them above
- [x] I have either (a) linked existing issues with `Fixes: #` / `Closes
#` / `Refs #` OR (b) described the issue in-PR following the relevant
issue template
- [x] I have not referenced internal/instance-local Paperclip issues or
links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip`
URLs)
- [x] My branch name describes the change (e.g. `docs/...`, `fix/...`)
and contains no internal Paperclip ticket id or instance-derived details
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [ ] All Paperclip CI gates are green
- [ ] Greptile is 5/5 with no open P2s, recommendations, or follow-ups
- [x] I will address all Greptile and reviewer comments before
requesting merge

🤖 Generated with [Claude Code](https://claude.com/claude-code)

---------

Co-authored-by: Claude Opus 5.5 <noreply@anthropic.com>
2026-11-07 01:08:11 -06:00
96bc021edb fix(server): certify settled legacy processes for future retries (#19377)
## Thinking Path

> - Paperclip is the open source app people use to manage AI agents for
work.
> - Bounded retries must preserve current authority, budgets and
deadlines.
> - The tenant can wait for supported future work after the source
process and its cleanup stop.
> - Retained process identity alone cannot prove that cleanup finished.
> - This change records host-owned settlement and checks its exact
identity before a retry can cover its wait.
> - Uncertain process state, changed authority, live claims and cleanup
debt keep the tenant awake.

## Linked Issues or Issue Description

Refs #19001. Related dependencies: #19019 and #18988. Related #19340
covers explicit Native task Retry; this change covers future Legacy
process retries.

Current integrated source: `1645970a9322d1213ba25fc7b52366c285682977`,
normally merged with actual master
`131b566ca4fa866c4348739c75cfe48c805b3398`. The prerequisites above are
merged. This PR targets `master`.

**What happened?**

A future issue, company or review retry can retain its failed source
process identity. The deadline reader could not prove that host cleanup
finished. Supported waits stayed blocked. Ordinary issue retries also
needed an exact source-settlement check, and represented coalesced
requests needed exact input coverage.

**Expected behavior**

A supported future retry covers only its existing wait, under current
company and actor authority, after exact host settlement. Missing,
malformed, stale, cancelled, Native or unfinished source state stays
blocked. No retry gains new execution authority.

**Steps to reproduce**

Fail an ordinary process or fail environment preparation before adapter
entry. Let normal cleanup schedule the existing retry. Inspect its
settlement and deadline, stop and reconstruct the owner, and admit one
useful successor at the saved deadline. Hold cleanup or change authority
to verify that the reader refuses coverage.

## What Changed

- Add nullable internal `legacyProcessSettlement` state through normally
generated migration `0439_cultured_impossible_man`. No backfill or
adapter result creates the record.
- Write exact host settlement after stopped-process and cleanup checks.
Compare the current run and reject live claims or cleanup debt. Optional
persistence failure preserves normal cleanup and keeps sleep coverage
blocked.
- Add a separate preparation receipt for a claimed Legacy run that
failed before any adapter or Native dispatch. Require the same boot, run
times, preparing stage, released claim and completed cleanup. A null PID
alone proves nothing.
- Clear settlement on a new claim, process metadata or Native selection.
Omit the internal record from public serialized data.
- Check exact source lineage and current authority for ordinary issue,
company and taskless retries. Cover completed coalesced requests only
when the admitted retry represents their exact inputs.
- Add the closed `current_review_retry` wait with current reviewer,
stage and existing issue authority checks. Require a nonempty current
stage ID.
- Add actual producer, cold reconstruction, SQL negative, redaction and
optional-persistence controls.
- Repair CI fixture expectations for the additive column, startup mock,
budget owner and popup return URL. Bind the controlled Native comment
server explicitly to loopback.
- Replace temporary Slack clock logging with an exact persisted-deadline
assertion. Wait until that real deadline before the existing single
default poll. Keep both forced polls, business assertions and timing
limits.

## Verification

- On final integrated source `1645970a`, normal Shared/SDK
prerequisites, Runner TypeScript and the entire normal App layered
typecheck pass. Tracked source and lockfile remain unchanged.
- All 26 whole-file settlement, recovery-reader and bootstrap controls
pass. Seven separate real PostgreSQL producer/negative cases pass at
`cf16c6a`; each has one selected passing case and 18 filtered
registrations. Filtered registrations are not acceptance.
- Master then changed the preparation source-lock scope. Its three
intersecting cases were rerun on final `1645970a`: an actual failed
company process, an actual failed ordinary issue process, and held
preparation cleanup. Each preserves its source identity and original
deadline and admits one useful successor. Issue and preparation cases
exercise normal automatic retry; the company case uses the normal
explicit bounded-retry producer.
- The unchanged 26 controls and four other PostgreSQL cases retain their
`cf16c6a` proof after a scoped source comparison. Optional
settlement/preparation persistence failures keep certification blocked
while normal cleanup completes. An entered adapter without process
identity stays uncertified. This is scoped carry, not a claim that every
earlier case ran again on the final head.
- All recorded test owners and controlled groups closed. Final read-only
SQL audits returned no test sessions. One earlier postcase resource
barrier observed a transient unattributed database backend; that
database and original evidence remain preserved. Its later disappearance
is recovery, not an explained cause. No assertion, deadline or test body
was relaxed.
- Migration0439 was generated normally after master history. All
executable SQL and journal history are preserved; the five retained
snapshots are0435–0439. Every Legacy-owned patch and unrelated
actual-master blob/mode is preserved.
- Published exact head `1645970a9322d1213ba25fc7b52366c285682977` passes
all current required checks: 68 successful contexts and eight expected
skips after exhaustive pagination and superseded-run accounting. The
fresh complete Greptile review scores this exact head 5/5. All four
inline review threads are resolved. The latest Ponytail turn stopped
without a verdict; one normal retry was requested, with no active turn
or new finding observed. No old-head score is used. The original
old-base policy failure, its dependent aggregate failure, and the
corrected description-gate failure remain recorded. No full local
repository suite is claimed; remote typecheck, test and build gates
pass.

To repeat the real database coverage, set both
`PAPERCLIP_RECOVERY_DEADLINES_TEST_DATABASE_URL` and
`PAPERCLIP_RECOVERY_DEADLINES_TEST_ADMIN_DATABASE_URL` to the same fresh
dedicated test database and run the selected
`recovery-deadline-acceptance.test.ts` cases with one worker. An unset
URL, skipped case or filtered registration is not acceptance.

The fixtures use controlled local processes and real PostgreSQL.
Reconstruction creates new service owners inside the same test process.
They do not prove deployed Cloud alarms, physical host/database
suspension, new-host recovery or Native capacity settlement. The
original30-second retry remains below the Cloud270-second minimum wake
lead.

The merge projection also includes actual master
`c3180398faca815fed7a62674bd4b0c4e88884ae`, whose common completion path
now sends deferred/recovery notifications. Its unpublished normal merge
tree is `16b028d57150f8caa576e913f38343a365b542dd`. Normal Shared/SDK,
Runner TypeScript and the full App graph pass on that combined source.
One unchanged ordinary-issue acceptance case was rerun there: an actual
failed process retains the original automatic retry deadline, admits one
useful successor, and passes the settlement, authority and no-duplicate
assertions. It passed in 45.055 s; 18 filtered registrations are not
acceptance. All known owners and groups closed, and the independent
final database audit found zero remaining test sessions. The successful
database was removed normally. Recorded worker socket peak is
unavailable for this run; parent-process zero values are not used as
worker measurements. All 29 Legacy-owned paths and every unrelated
master blob and mode are preserved.

Two outside-diff review observations concern existing waiting-chat
compaction and cross-host Native result-lease recovery. Their files are
byte-identical to current master. This focused Legacy change does not
fix or qualify those separate paths.

## Risks

Settlement proves exact local closure. It does not cover live provider
work, Native ownership, cancellation, costs, claims, cleanup debt or
changed authority. Independent checks remain.

Ship normal migration0439 with the reader and writer. Preserve
executable history and the newest five snapshots0435–0439. Generate the
MCP child's next migration normally after this parent.

The prerequisites are merged; the final remote checks must use this
integrated exact head. This proof uses controlled local processes and
external PostgreSQL. It does not establish deployed Cloud alarm
acceptance, physical host or database suspension, cold host recovery, or
R5 Native capacity settlement. The30-second retry is below the Cloud
minimum wake lead.

This focused repair follows the roadmap's bounded recovery and Cloud
deployment work. It adds no new provider policy.

## Model Used

OpenAI `gpt-6.1-sol` assisted with readers, fixtures, source review and
verification through Codex. A coordinating GPT-6-family agent
implemented and reviewed shared lifecycle wiring and integration. Tools
included Git, native TypeScript checks and controlled tests. Exact
served revisions and context limits were not exposed.

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used and its available capability
details
- [x] I have checked ROADMAP.md and related work
- [x] I have searched GitHub for duplicate or related PRs and linked
them above
- [x] I have linked existing public work and described the issue
- [x] I have not included internal issue IDs or private links
- [x] My branch name describes the change
- [x] Required focused checks pass at their explicitly recorded
source/carry scopes above
- [x] I have added or updated meaningful tests
- [x] I have recorded the internal contract and migration requirements
- [x] I have documented risks and evidence limits
- [x] All required published exact-head Paperclip CI gates are green
- [x] Published exact-head Greptile is 5/5 with no open findings in this
focused diff; separate unchanged master observations are identified
above
- [x] I will address reviewer findings before requesting merge

---------

Co-authored-by: Paperclip <noreply@paperclip.ing>
Co-authored-by: Codex <noreply@openai.com>
2026-11-07 00:56:04 -06:00
DottaandClaude Opus 5.5 e620ce3678 fix(heartbeat): deliver each accepted follow-up exactly once through restarts and admission holds (#19741)
## Thinking Path

> - Paperclip is the open source app people use to manage AI agents for
work
> - A user can comment, click Retry, or rely on automatic recovery while
an agent works on a task
> - Restart-chaos waves showed accepted follow-ups being dropped, or
delivered twice, around restarts and temporary company admission holds
(accounting still settling after a restart)
> - A dropped comment means the user's request is never acted on. A
duplicate reopens work that is already done
> - This pull request makes accepted work wait through a temporary hold
and resume when it clears. It also stops a comment from being promoted
again after a completed run already received it
> - The benefit is that each accepted follow-up is delivered exactly
once, eventually, unless the task is cancelled or a reached hard stop
applies

## Linked Issues or Issue Description

Refs #19702 (never-started tasks during a temporary hold), #19700
(bounded accounting hold), #14910 (stale reopen from a deferred wake; no
file overlap).

**What happened?**
Restart-chaos waves found these shapes:
1. **Comment wake cancelled.** A comment was saved behind a run and
promoted when the run ended. A temporary company hold refused the
unstarted queued run, and claim cancelled it terminally. The recovery
wake that followed was cancelled the same way, and the task rested
`blocked` without the comment.
2. **Dead Retry.** A Retry click during the hold stayed
`deferred_issue_execution` after the hold cleared. Nothing woke it, and
the issue held no execution lock.
3. **Refused assignment.** A new task's first wake was refused during
the hold. Nothing woke stranded-work recovery when the hold cleared, so
the task stayed `todo` with no run.
4. **Silent comment after recovery.** A comment was saved behind a run
that restart recovery finalized. A company-scoped hint waited out the 30
s deferred-receipt rescan, so the task looked done with the message
unread.
5. **Comment delivered twice.** A run whose provider process was lost
had a saved comment. Its retry started after the comment, received it in
its prompt (task history), did the work, and finished the task. The
saved wake was then promoted anyway, which reopened the done task.

**Expected behavior**
An accepted follow-up (comment, Retry, recovery) is delivered exactly
once, eventually, unless the task is cancelled. A temporary refusal
never ends in a terminal cancel, skip, or block. Reaching a hard stop
remains the board's decision.

## What Changed

- `heartbeat/queue.ts`: on a budget block at claim, an unstarted queued
run stays queued when the block is temporary. A reached hard stop or
blocked unpriced usage still cancels it.
- `recovery/service.ts`: stranded-work recovery waits out a temporary
hold for any task. It does not escalate to `blocked`. This extends
#19702 beyond never-started tasks.
- `budget-block-ownership.ts`: a shared `isBoardOwnedBudgetBlock`, moved
out of the recovery service. `budgets.ts` is unchanged.
- `run-cost-accounting.ts`: settling a run's accounting wakes queued-run
dispatch, the deferred-receipt worker, and stranded-work recovery. Held
work waits passively; this is what resumes it.
- `deferred-execution-notifications.ts`: new
`notifyDeferredWakesForIssue`. `native-run-projection.ts` (a run
reaching a terminal status) and `environments.ts` (lease release) now
hint each saved wake of the issue by id, so delivery does not wait out
the company rescan interval.
- `wake-queue/adapters/postgres.ts`: release treats a saved comment as
delivered only when a succeeded run of the wake's agent on that issue
started after the comment's latest revision, and either received the
comment as its own wake input (`wakeCommentIds`) or was a retry of the
interrupted turn whose task history included it. In that case it cancels
the saved wake with "Queued messages were already delivered to a
completed run" and leaves the task as it is. Task history alone never
consumes a message saved for its own turn. One query checks the whole
batch.
- `run-cost-accounting.ts`: settling late receipt debt also sends the
hold-release notifications.
- `doc/execution-semantics.md`: documents the rule.

## Verification

Red on `master` and green with this change, on embedded Postgres:
- `server/src/__tests__/heartbeat-held-comment-wake.test.ts`:
- A promoted comment refused by the hold stays pending, with no
cancelled run and no `blocked` task. It is delivered once after the hold
clears through real `accountRunCost`.
- A Retry clicked during the hold starts exactly once after accounting
settles, which wakes its owner.
- A new task whose assignment was refused during the hold starts once
accounting settles, which wakes stranded-work recovery.
- A comment that a later succeeded retry already received as history, or
that a later run received as wake input, is consumed without reopening
the task.
- Guard tests (green on both):
- A comment is still delivered in each of these cases: the later run
never received it, it was edited after that run started, it was posted
while the run was already running, or a non-retry run only saw it as
history.
  - A task whose continuation was refused waits out the hold.
  - A reached hard stop is still refused.
- `server/src/__tests__/native-run-projection-work.test.ts`: projecting
a recovered run terminal hints the saved comment's own wake (red on
`master`).
- Related suites pass locally (14 files, 482 tests): wake-queue, queued
comments routes, refused assignment wake, native run projection.
- Live replays (local, unmasked, kept instances):
- `--replay w-20261107T031005-s7501/t04` (Claude C1, K1): PASS. The
comment's run was created at 03:56:24 during the hold, stayed queued,
started at 04:06:24 when the hold cleared, and succeeded. It is the only
run carrying the comment.
- `--replay w-20261107T002911-s7401/t01` (before the per-wake hint): it
reproduced shape 4. Run 592d772f was killed 250 ms after
`run.result.accepted`, released and finalized at restart, and the task
rested `done` with the comment still saved. Calling the existing sweep
on the kept database promoted it, which confirmed that the missing piece
was the trigger.

## Risks

- A queued run can now sit queued for the length of a temporary hold,
which #19700 bounds. It does not hold the issue's execution lock, so
later comments still coalesce into it.
- The delivered-comment rule depends on the run's recorded prompt
context. A succeeded run that received the comment in its history counts
as delivery, even if the agent did not act on it. This matches
exactly-once delivery semantics.
- Settling accounting now emits three extra notifications per run. They
are coalesced per company.

## Model Used

- Claude Opus 5.5 (`claude-opus-5-5`), Anthropic, run as an agent in
Claude Code with tool use (shell, file editing, local test execution,
live restart-chaos replays).

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have searched GitHub for duplicate or related PRs and linked
them above
- [x] I have either (a) linked existing issues with `Fixes: #` / `Closes
#` / `Refs #` OR (b) described the issue in-PR following the relevant
issue template
- [x] I have not referenced internal/instance-local Paperclip issues or
links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip`
URLs)
- [x] My branch name describes the change (e.g. `docs/...`, `fix/...`)
and contains no internal Paperclip ticket id or instance-derived details
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [ ] All Paperclip CI gates are green
- [ ] Greptile is 5/5 with no open P2s, recommendations, or follow-ups
- [x] I will address all Greptile and reviewer comments before
requesting merge

🤖 Generated with [Claude Code](https://claude.com/claude-code)

---------

Co-authored-by: Claude Opus 5.5 <noreply@anthropic.com>
2026-11-07 00:24:09 -06:00
DottaandClaude Opus 5.5 9f0ebf6f70 fix(accounting): close a run whose turn was lost on restore, and stop succeeded runs holding all work (#19724)
## Thinking Path

> - Paperclip is the open source app people use to manage AI agents for
work
> - Budgets hold new work while the cost of completed runs is unknown
> - In a restart chaos wave, a native ACPX Claude run crossed a server
kill, resumed, and succeeded. Its usage receipt never became complete.
> - For the 10-minute closure bound, admission refused all work in the
company. This included tasks that never crossed a fault.
> - This pull request fixes the receipt for a turn that was lost on
restore. It also stops a succeeded run from holding all new work.
> - The benefit: one late usage report no longer freezes a company, and
hard stops still apply.

## Linked Issues or Issue Description

Refs #19700 (the accounting closure bound that this follows).

**What happened?**
A native ACPX Claude run crossed a server SIGKILL in the middle of a
turn. The Runner restored the session, and the run succeeded 54 seconds
after it started. All 17 usage receipts stayed incomplete. Accounting
settled the run only at the 10-minute closure bound. During those 10
minutes, admission refused all company work with "Company cannot start
work while completed runs await accounting".

**Root cause**
ACPX reports provisional usage (`runDeltaComplete: false`) until a turn
ends. The kill lost the turn that was active, so that turn never got a
complete report. The restored Runner failed that turn with
`provider_turn_lost_on_restore`. Native turn accounting
(`createNativeTurnAccounting`) required every terminal turn to have
usage, so this turn kept every later receipt incomplete. This was true
even after the continuation turn completed with full usage. The
admission gate then counted the succeeded run as a pending terminal run
for the whole company.

**Expected behavior**
The receipt closes when the run's turns end. A turn that was lost on
restore makes the usage a lower bound. A succeeded run with only usage
outstanding does not hold other work.

## What Changed

- `native-usage-accounting.ts`: a turn that failed with
`provider_turn_lost_on_restore` and has no complete usage no longer
holds the receipt open. The snapshot marks `accountingUsageLost`.
- `native-session-executor.ts` and `native-usage-delivery.ts`: such a
receipt carries the provenance note "a provider turn was lost on restore
and never reported its usage; observed usage is a lower bound".
- `anthropic-pricing.ts` and `codex-pricing.ts`: the rate-card pricers
keep a producer's provenance note.
- `native-usage-delivery.ts` and `usage-receipts.ts`: remote producer
delivery keeps a `lostOnRestore` marker on the receipt's producer event,
so replay also excuses the lost turn. Receipts saved without the marker
still replay.
- `budget-exposure.ts` and `budgets.ts`: admission waits only for
pending runs that ended without succeeding (`waitingRunCount`). A
succeeded run whose provider reported observed usage is bounded like a
running run: its observed cost counts toward spend and reservation
capacity, and its settled charge can still reach the hard stop.
- `budget-exposure.ts`: a closure that timed out because of a
control-plane restart keeps the unpriced-usage exemptions, whatever its
token count. Restart evidence is a replaced receipt source, a native
recovery transition that is not an ordinary same-run retry, or a turn
lost on restore. A second chaos run showed the need. It recovered and
succeeded, but its final usage report was lost with the restart, so it
settled as unpriced 0 cents. The blocking policy then opened a hard
incident and paused the company. A timed-out closure with no restart
evidence still counts.
- `run-cost-accounting.ts`: a lost receipt that carries a positive
provider-reported cost settles at that cost as an estimate marked as a
lower bound, not as unpriced.
- `paperclip-runner-tool-authority.ts` and `budgets.ts`: a running run's
own tool mutations are evaluated as admitted work. Hard stops and pauses
still refuse them. Accounting holds, recovering runs and budget inputs
that await evaluation do not. In a third chaos run, a live run's write
to its task document was refused during a temporary hold, so the run
proposed a blocked result.
- `doc/SPEC-implementation.md`: documents these rules.

Policy choice: a succeeded run's provider work is over, so it has less
unknown spend than a running run. Running runs never held admission.
Failed, cancelled, timed-out and interrupted runs still hold new work,
because their provider may not have stopped. A per-agent gate would
still freeze unrelated work of the same agent. A per-reservation gate
does not help when `reservationCents` is 0, which was the case in this
wave.

## Verification

- Live: a restart chaos wave ran master plus this PR (c2a48fb1e0) with
no masking. It passed 6/6, and every task crossed a restart. There were
0 accounting holds, 0 refused agent writes, 0 company pauses, and every
cost settled as estimated.

- Red then green: `native-usage-accounting.test.ts`, "closes a run whose
earlier turn was lost on restore, as a lower bound". It uses the event
sequence of the chaos run.
- Red then green: `closed-native-receipt-accounting.test.ts`, "does not
hold other work for a succeeded run with only usage outstanding". It
also checks that the hard stop still applies.
- I changed "neither pauses nor holds admission while a succeeded run's
charge commits" to the new policy. A failed run in the same state still
holds new work.
- Red then green: `closed-native-receipt-accounting.test.ts`, "never
hard-stops a blocking policy for a restart-derived timed-out receipt".
It uses the zero-token row shape of the chaos run and a case with
unpriced tokens. Without the fix, the company was paused.
- Red then green: `runner-api.integration.test.ts`, "lets a running run
write during a temporary accounting hold, but not after a hard stop".
- Red then green: `closed-native-receipt-accounting.test.ts`, "does not
hold other work for the s7504 succeeded row shape".
- Red then green: `closed-native-receipt-accounting.test.ts`, "settles a
timed-out restart receipt at its provider-reported cost, without holding
or pausing". It uses the OpenCode/OpenRouter row shape from a fourth
chaos run.
- `anthropic-pricing.test.ts`: the rate-card provenance keeps the
lower-bound note.
- Local: `closed-native-receipt-accounting`, the budget suites,
`native-usage-accounting`, `native-usage-delivery.integration`,
`native-runner-restart-recovery.integration` and `anthropic-pricing` all
pass (187 tests). Server `tsc --noEmit` is clean. `pnpm verify` asks for
CI coverage because the spec changed.

## Risks

- A succeeded run whose final charge is higher than its observed cost
can let one more task start before the charge commits. The hard stop
then pauses the scope as it does for a running run that overruns.
- A run that includes a lost turn settles with a lower-bound usage
figure. The provenance says so, and a later receipt still reconciles
through the late-receipt path.

## Model Used

- Anthropic Claude Opus 5.5 (`claude-opus-5-5`), Claude Code agent with
tool use and code execution.

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have searched GitHub for duplicate or related PRs and linked
them above
- [x] I have either (a) linked existing issues with `Fixes: #` / `Closes
#` / `Refs #` OR (b) described the issue in-PR following the relevant
issue template
- [x] I have not referenced internal/instance-local Paperclip issues or
links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip`
URLs)
- [x] My branch name describes the change (e.g. `docs/...`, `fix/...`)
and contains no internal Paperclip ticket id or instance-derived details
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [ ] All Paperclip CI gates are green
- [ ] Greptile is 5/5 with no open P2s, recommendations, or follow-ups
- [x] I will address all Greptile and reviewer comments before
requesting merge

🤖 Generated with [Claude Code](https://claude.com/claude-code)

---------

Co-authored-by: Claude Opus 5.5 <noreply@anthropic.com>
2026-11-06 23:57:48 -06:00
131b566ca4 fix(workspaces): report safe Git restore diagnostics (#19736)
Return the restore stage and failure category with the existing HTTP409 rejection. Preserve the unsaved comment and editable draft. Keep nested saved-commit and clone-timeout diagnostics through preparation wrappers, and distinguish local Git file errors from authentication failures. Retain only safe process flags privately; no raw command cause is exposed.

All seven affected local suites pass (288 tests) and the layered server typecheck passes on supported Node25.6.1. Reviewed head 022eb7c2eb has Greptile Apex5/5, zero unresolved findings and all applicable CI passing (55 successful checks and4 intentional skips).

Co-Authored-By: Sentry Bot <sentry-bot@paperclip.invalid>
Co-Authored-By: Claude Opus 5.5 <noreply@anthropic.com>
Co-Authored-By: Paperclip <noreply@paperclip.ing>
2026-11-06 21:33:59 -08:00
839d41aabb fix(server): retire owned plugin listeners before idle sleep (#19358)
## Thinking Path

> - Paperclip is the open source app people use to manage AI agents for
work.
> - Plugins receive durable agent lifecycle events through a registered
host.
> - The host uses a PostgreSQL LISTEN connection to wake delivery.
> - An idle report could return `none` while that host-owned connection
stayed open.
> - This change gives that listener an exclusive owner and closes it
during the current idle hold.
> - Release or expiry restores listening before journal replay.
> - Failed close and pending work continue to block sleep.

## Linked Issues or Issue Description

Refs #18988, which is now merged. This focused ten-file change now
targets master. Current integrated candidate:
`0f83005122ef1bdb1f1e08f8f58424c9a840ebb1`, with actual master
`644ee66f5d4ae8365fe8b9eca57df2be7405b5ab` preserved through normal
merges. No history was rewritten.

**What happened?**

A normal local App with an installed lifecycle plugin could return an
idle `none` report while its lifecycle LISTEN backend and socket stayed
open.

**Expected behavior**

The host must close its own listener before it reports idle safety. It
must retain other subscriptions, durable events, company scope, retry
deadlines and useful reactivation.

**Steps to reproduce**

Start the normal server with a lifecycle plugin. Create an agent and
wait for its durable acknowledgment. Stop the server, create another
agent while it is stopped, and restart with the same files. Request an
owned idle hold after ordinary replay. Check the exact listener backend
and matched Node socket before shutdown. Let the valid hold expire
naturally, then make an ordinary authorized agent update and check its
durable plugin acknowledgment.

Live executing or persistent preview services remain active. The
separate hosted preview dependency
[paperclip-cloud#478](https://github.com/paperclipai/paperclip-cloud/pull/478)
retains its own App and operator prerequisites. This PR does not claim
deployed preview or suspension acceptance.

## What Changed

- Add a private, exclusive database listener owner that inherits the
normal client policy.
- Prepare plugin lifecycle retirement after native retirement under the
same current idle hold.
- Use one delivery-eligibility helper for dispatch and idle journal
inspection. It preserves the same manifest, capability, company-disable
query, and skip rules.
- Close only the owned listener. Keep failed close ownership and
inspection failures visible.
- Resume listening on normal release or expiry, before journal replay.
- Preserve disabled-feature retry history and the original deadline on
re-enable.
- Await lifecycle disposal during normal shutdown and consumer teardown.
- Add owner regressions and document the lifecycle contract.

## Verification

**Current integrated source:**
`0f83005122ef1bdb1f1e08f8f58424c9a840ebb1`. Fresh normal Runner
TypeScript passed in 0.785 seconds. The complete normal App layered
semantic check passed in 28.284 seconds. All tracked source, the
lockfile and the 18 separate private witness inputs stayed unchanged.
Known compiler owners closed and the isolated temporary home was
removed.

**Current product qualification:** at measured integration
`896cc9b62993e6ed10418d7a7417e1ddbf8dc89c`, all three whole files passed
with no failures or skips: lifecycle delivery 40, runtime hooks 20, and
runtime assignments 24. The actual physical LISTEN and natural-expiry
controls passed. All owned clients and captured processes closed.
Independent final session checks were zero before normal deletion of
each successful test database.

**Normal full-App physical retirement:** the original case passed in
47.574 seconds. It exercised real startup, readiness, SDK callbacks,
durable ACK, foreign-company exclusion, physical stop, offline input and
cold replay. The initial unknown hold and its ordinary release remain in
the evidence. After the original 30.5-second cadence, a new valid hold
returned quiescent. The exact current cold-App LISTEN backend and its
matched Node socket closed before server stop.

**Normal full-App natural expiry:** the separate original case passed in
77.391 seconds under its original 90-second body cap. The final valid
30-second hold expired naturally. A new listener backend and matched
current App socket appeared before fresh input. An ordinary authorized
agent-name PATCH produced journal event 20, the actual SDK callback and
durable ACK. Foreign exclusion and readiness assertions passed. The
final measured hold had no manual release, replacement hold or shortened
TTL. The original preparatory unknown hold, ordinary release and
30.5-second cadence remain explicit.

Both App cases used the normal current server helpers and actual SDK
bundling/worker entry. A private compatibility change supplied the same
owned HOME at the exact existing child-fork boundary. It did not change
the product helpers, business assertions or timing limits. These
separate acceptance fixtures remain outside the focused product diff.

**Source carry to the current candidate:** all nine other owned files,
listener mechanics, actual producer paths, SDK paths and measured hold
behavior are unchanged. The sole owned intersection from newer master is
an independent environment-delete cleanup callback in `app.ts`. The
plugin witnesses do not call that route. Normal merges preserve every
unrelated master blob and file mode. The fresh current semantic checks
above qualify the integrated source. New master Native crash-recovery
and saved-copyback Retry capabilities are not claimed by these plugin
cases.

**Actual master merge target:** newer master contains retained plugin
Runner release/resume and other Native recovery fixes. The projected
combined target passed fresh normal Runner TypeScript in 0.799 seconds
and the full App semantic check in 29.715 seconds. All ten plugin-owned
blobs and modes remain exact to the published head; every unrelated
master change is preserved. The measured plugin cases create no Native
provider turn or warm Native session. The unchanged
native-first/plugin-second ordering still checks the native result
before listener retirement. Later sparse-checkpoint and Native
response-publication changes do not enter those paths. This is a scoped
source carry, not new hosted Runner acceptance.

**Failures retained:** an earlier reactivation fixture's real timer
returned one millisecond before its original wall-clock expiry. Its
private fixture now waits any positive remainder and retains the same
expiry assertion and limits. The earlier partial-composition `unknown`
result remains distinct from normal-startup proof. Current qualification
also exposed missing normal workspace dependencies and a private guard
that assumed loose Git refs. Normal owned dependency setup and an exact
loose-or-packed reader fixed those setup failures. No business
assertion, timeout, permission boundary or product sleep gate was
relaxed.

Repeat focused product coverage with a fresh external fixture database
and the normal server Vitest command, one worker:

```sh
pnpm --filter @paperclipai/server exec vitest run src/__tests__/plugin-lifecycle-delivery.test.ts --maxWorkers=1 --no-file-parallelism
pnpm --filter @paperclipai/server exec vitest run src/__tests__/agent-runtime-hooks.test.ts --maxWorkers=1 --no-file-parallelism
pnpm --filter @paperclipai/server exec vitest run src/__tests__/agent-runtime-assignments.test.ts --maxWorkers=1 --no-file-parallelism
```

Exact current head `0f83005122ef1bdb1f1e08f8f58424c9a840ebb1` has 60
successful checks, three skips and one neutral result, with no pending
or failing contexts. Greptile completed its full review at 5/5 with no
actionable issue. All root and nested review pages were read; the
earlier eligibility finding is resolved. Ponytail's latest turn stopped
before a verdict. A normal retry was requested; no current Ponytail
verdict or score is claimed. Previous `3ca86ec` CI and scores are
historical. A full local repository typecheck/test/build or browser run
is not claimed. Controlled local App/SDK/PostgreSQL proof does not
establish live provider, deployed Railway/Neon suspension, signed Cloud
alarms or global exactly-once delivery.

## Risks

- A listener close failure or uncertain inspection must continue to
block sleep.
- Release, expiry, configuration changes, and journal arrival can race
with retirement. Epoch and current-hold checks retain conservative
results.
- Delivery remains at least once across uncertain ACK boundaries. This
change does not add global exactly-once delivery.
- The database helper closes only its exclusive listener client. Other
owners and subscriptions keep their resources.

## Model Used

OpenAI `gpt-6.1-sol`, reasoning and code/tool use. The managing Codex
agent implemented shared database/composition seams and reviewed the
change; its exact model ID was not exposed. The runtime does not expose
a verified context-window size.

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have searched GitHub for duplicate or related PRs and linked
them above
- [x] I have either (a) linked existing issues with `Fixes: #` / `Closes
#` / `Refs #` OR (b) described the issue in-PR following the relevant
issue template
- [x] I have not referenced internal/instance-local Paperclip issues or
links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip`
URLs)
- [x] My branch name describes the change (e.g. `docs/...`, `fix/...`)
and contains no internal Paperclip ticket id or instance-derived details
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [x] All Paperclip CI gates are green
- [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups
- [x] I will address all Greptile and reviewer comments before
requesting merge

---------

Co-authored-by: Paperclip <noreply@paperclip.ing>
Co-authored-by: Codex <noreply@openai.com>
2026-11-06 22:56:47 -06:00
DottaandPaperclip 1c91bacf97 fix(native): admit independent replies during contended publication (#19726)
## Thinking Path

> - Paperclip manages work done by AI agents.
> - A completed native run must deliver its saved final response.
> - The response worker also recovers retained replies that can wait on
publication locks.
> - A pass waited for its old publication groups even when other check
slots were free.
> - This could delay an independent final reply beyond a full page of
retained candidates.
> - This PR enables the existing shared coordinator option that admits
independent due work during an active pass.
> - Existing authority checks, resource keys and the four-check limit
still control publication.

## Linked Issues or Issue Description

**What happened?**
A native run completed after replacement recovery. Its final response
and accounting were saved, but its final issue reply was missing. The
response queue contained more than 100 retained chat replies and
repeated endpoint-lock failures. The existing worker did not admit
independent due entries until its current groups finished.

**Expected behavior**
A contended publication owner must not hold free worker slots. An
independent accepted final reply must publish once, including when its
candidate is on a later SQL page.

**Steps to reproduce**
Create 100 accepted, committed replies that share one publication owner.
Create an independent reply after them in candidate order. Hold the old
coordinator rows with a database transaction and start the real response
worker. Before this change, the independent reply stays unpublished
until the old group is released.

Related: #18977 changes response selection in standing conversations.
This PR changes only worker admission and preserves response selection.

## What Changed

- Enable `admitDueWhileActive` in the native response worker's existing
shared coordinator configuration.
- Add a real PostgreSQL regression with the full 100-row SQL page, the
default dispatch batch, real row-lock contention and a later-page
independent reply.
- Verify one comment per reply after settlement and no further SQL or
scheduled deadline across 60 seconds of idle time.
- Update one existing principal/rescope integration assertion to observe
the reconciled invalidation revision. Keep its actual per-run replies,
authorization, publication and idle checks.

## Verification

- Regression on the unchanged worker: the independent reply remained
unpublished while the first 100 replies were locked. The real PostgreSQL
test failed as expected.
- Final head `748fb9609104c016c33ff7caf282ba9e15e88495`: all six
publication regressions and both principal/rescope controls passed (8/8,
47.96 seconds). Checks cover later-page admission, exact per-run comment
counts, retry and rollback behavior, authorization, and 60 seconds with
no idle SQL or scheduled deadline.
- The tests used the canonical PostgreSQL wrapper and one owned
disposable PostgreSQL 18.1 fixture. All clients and test databases were
closed before fixture cleanup.
- The current-head [full CI
run](https://github.com/paperclipai/paperclip/actions/runs/42338953241)
supplies typecheck, build and broad test coverage. All current-head
checks passed; the merge gate is green.
- Local full typecheck was blocked by unbuilt dependencies; it is not
counted as a pass. The prior timer-state CI failure and the final
successful rescope-generation regression remain recorded.
- Greptile reviewed the final head at 5/5 with no unresolved threads.
`git diff --check` passed.
- Deployed acceptance remains separate. No serving instance was changed
by the PR tests.

## Risks

The worker can now use free slots during a slow pass. The shared
coordinator still limits checks to four and preserves task, endpoint and
principal exclusions. Authorization, result identity, retry limits,
response selection and transaction ownership are unchanged. The
regression checks idle quiet after all concrete obligations settle.

## Model Used

OpenAI GPT-6.1 (`gpt-6.1-sol`), with reasoning, code execution and tool
use. The runtime does not expose the context window size.

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have searched GitHub for duplicate or related PRs and linked
them above
- [x] I have either (a) linked existing issues with `Fixes: #` / `Closes
#` / `Refs #` OR (b) described the issue in-PR following the relevant
issue template
- [x] I have not referenced internal/instance-local Paperclip issues or
links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip`
URLs)
- [x] My branch name describes the change (e.g. `docs/...`, `fix/...`)
and contains no internal Paperclip ticket id or instance-derived details
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [x] All Paperclip CI gates are green
- [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups
- [x] I will address all Greptile and reviewer comments before
requesting merge

---------

Co-authored-by: Paperclip <noreply@paperclip.ing>
2026-11-06 22:47:30 -06:00
DottaandClaude Opus 5.5 aed053633e fix(environments): run pending sandbox cleanup when an environment is deleted (#19716)
## Thinking Path

> - Paperclip is the open source app people use to manage AI agents for
work
> - Operators delete a sandbox environment, optionally with consent to
destroy its sandboxes (`DELETE
/api/environments/:id?destroyReusableSandboxLeases=true`)
> - A sandbox whose teardown failed or was interrupted is kept as a
`pending_cleanup` lease, and it blocks the delete
> - The cleanup sweep retries such a lease only after a cooldown of up
to 5 minutes
> - A consented delete therefore returned 409 `pending_sandbox_cleanup`
for minutes. A caller with a shorter deadline gave up, and the
environment and its sandbox stayed behind
> - This pull request makes the consented delete run one teardown
attempt for the environment's pending cleanups now, then re-check
> - The benefit is that a consented environment delete completes as soon
as the provider teardown succeeds

## Linked Issues or Issue Description

**What happened?**
After a restart chaos wave, the harness deleted the wave's Daytona
environment with `destroyReusableSandboxLeases=true`. The server
returned 409 `pending_sandbox_cleanup` every 3 seconds for the whole
120-second client deadline. A run lease had entered `pending_cleanup`
after its run failed, and the sweep's retry cooldown had not passed. The
environment was not deleted.

**Expected behavior**
With explicit consent, the delete tears down the environment's own
pending sandbox cleanups and completes when that teardown succeeds. A
teardown that fails, or one already in flight elsewhere, still blocks
the delete.

**Steps to reproduce**
1. Leave a sandbox lease of an environment in `pending_cleanup` with a
future retry time.
2. `DELETE /api/environments/:id?destroyReusableSandboxLeases=true`.
3. On master, the response is 409 `pending_sandbox_cleanup` until the
cooldown ends.

Refs #19696 (restart recovery for creation and teardown claims; this
builds on it).

## What Changed

- `heartbeat/recovery.ts`: `sweepPendingCleanupLeases` accepts
`environmentRetry: { environmentId, actorId }`. Like the existing
run-scoped explicit retry, it bypasses the cooldown for one attempt,
never takes over an in-flight attempt, and logs
`environment_lease.cleanup_retried` with reason `environment_deleted`.
It touches only that environment's leases.
- `routes/environments.ts`: when the delete has consent and the only
blockers are pending cleanup and reusable leases, it runs that retry
first, then re-reads the blast radius. The existing reusable-lease
destroy and the final guard are unchanged. The new dependency is a
narrow, optional `retryPendingEnvironmentCleanup` option; without it,
behavior is unchanged.
- `app.ts`: wires the option to the existing heartbeat service instance.

## Verification

- Red, then green:
- `environment-routes.test.ts`: "runs the environment's pending sandbox
cleanup now and deletes with explicit consent" and "keeps rejecting when
the consented pending cleanup attempt does not finish" fail before and
pass after. "does not run pending sandbox cleanup without consent or
past another blocker" passes in both.
- `heartbeat-pending-cleanup-sweep.test.ts`: "runs one attempt for a
deleted environment's cleanup during its cooldown, scoped to that
environment" fails before and passes after. It checks that another
environment's lease and an in-flight claim are untouched, and that the
activity log is written.
- `sandbox-creation-operations.test.ts`: "reclaims an issue-bound
creation after its run failed and the issue finished on a later run"
covers another chaos finding. A creation intent bound to an issue was
interrupted by SIGKILL 0.5 s after it committed, its run ended
`process_lost`, and a later run finished the issue. The test fails on
the code before #19696 and passes on master, so #19696 already covers
this case. The test is kept as a regression.
- After rebasing on master, `environment-routes`,
`heartbeat-pending-cleanup-sweep`, `agent-runner-qualification-routes`
and `sandbox-creation-operations` pass (192 tests). `tsc --noEmit`
reports no errors in the changed files.

## Risks

- A consented delete now makes provider teardown calls for pending
cleanups. Those sandboxes were already queued for destruction, and the
operator consented to destroy the environment's sandboxes.
- One explicit attempt counts toward the lease's attempt cap, the same
as a user Retry.
- The delete request now waits for those teardown attempts. Each attempt
uses the existing plugin timeouts.

> For core feature work, check [`ROADMAP.md`](ROADMAP.md) first and
discuss it in `#dev` before opening the PR. Feature PRs that overlap
with planned core work may need to be redirected — check the roadmap
first. See `CONTRIBUTING.md`.

## Model Used

- Claude Opus 5.5 (`claude-opus-5-5`), Anthropic, via Claude Code with
tool use (shell, file editing, test execution). Extended reasoning
enabled.

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have searched GitHub for duplicate or related PRs and linked
them above
- [x] I have either (a) linked existing issues with `Fixes: #` / `Closes
#` / `Refs #` OR (b) described the issue in-PR following the relevant
issue template
- [x] I have not referenced internal/instance-local Paperclip issues or
links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip`
URLs)
- [x] My branch name describes the change (e.g. `docs/...`, `fix/...`)
and contains no internal Paperclip ticket id or instance-derived details
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [ ] All Paperclip CI gates are green
- [ ] Greptile is 5/5 with no open P2s, recommendations, or follow-ups
- [x] I will address all Greptile and reviewer comments before
requesting merge

🤖 Generated with [Claude Code](https://claude.com/claude-code)

---------

Co-authored-by: Claude Opus 5.5 <noreply@anthropic.com>
2026-11-06 21:28:54 -06:00
DottaandClaude Opus 5.5 51eb4ff705 fix(recovery): finalize an accepted native result after a hard kill (#19713)
## Thinking Path

> - Paperclip is the open source app people use to manage AI agents for
work
> - A native run hands its accepted result to a controller lease, and
the controller finalizes the task from that result
> - A graceful shutdown releases that lease for the next server
(#19591), but a hard kill (SIGKILL, OOM, host crash) cannot
> - After a hard kill between result acceptance and finalization, the
next server waited for the dead controller's 20-minute lease, so the run
stayed `running` and the user's follow-up comment waited with it
> - This pull request releases that lease at startup when the controller
is proved dead by its boot ID and process identity, never by age
> - The benefit is that the saved result finalizes within seconds after
a restart, without another provider turn, and queued follow-up work
continues

## Linked Issues or Issue Description

Refs #19591 (the graceful-shutdown counterpart) and #19578
(boot-identity proof for legacy runs).

**What happened?**
A restart-chaos wave sent K1 (SIGKILL) 20 ms after a Claude run recorded
`run.result.accepted` and `run.terminal`. The run then stayed `running`
for more than 10 minutes, through four more restarts. The finalization
row was `workspace_finalizing` with the stored result. Its lease
belonged to the killed server: a different `controller_boot_id`, a
`controller_pid` with no process, and `lease_expires_at` 20 minutes
ahead. Startup recovery skips runs that already have a result. The
result-commit worker waits until the lease expires. The task's follow-up
comment could not run until then.

**Steps to reproduce**
1. Let a native local run accept its result.
2. SIGKILL the server before finalization finishes.
3. Restart the server. The run stays `running` until the old lease
expires.

**Expected behavior**
After a restart, a result lease held by a stopped controller of an
earlier boot is treated as released at once. The stored result finalizes
once, with no new provider turn, and the follow-up wake runs after it.

## What Changed

- New
`server/src/services/native-runtime/native-dead-controller-result-lease.ts`:
`releaseDeadControllerResultLeases` finds `running` native runs with an
accepted result and an unexpired lease. It requires the lease to belong
to a different controller boot. It proves the controller stopped with
`evaluateNativeControllerTakeover` (`requireStoppedController`): the
process is dead, or its PID now names another process. It then expires
that lease with a compare-and-set on the exact owner token, boot ID, and
PID, and notifies the result-commit and finalization workers.
- `server/src/services/heartbeat/recovery.ts`:
`recoverNativeRunsAfterRestart` calls this first and records a
`native.recovery.transition` event (`awaiting_result_finalization`) for
each released run.
- Only executor leases are released, because only the executor claim
writes the controller identity together with the lease. Finalizer
(`native-finalizer:`) and cleanup (`native-cleanup:`) claims keep an
earlier executor's identity, so they are never released this way and
expire on their own short leases. A finalization-resume token
(`:resume:`) on a result row always belongs to the executor that adopted
it, because a pending resume claim is taken only on a row without a
result.
- Also not released: a live owner, an owner without a recorded process,
a lease of the current boot, a run this process is executing, and remote
workspaces (`nativeWorkspaceSync` or `remoteWorkspace`), which keep
their fenced lease.
- The compare-and-set does not compare the stored expiry. Postgres
stores microseconds that a JavaScript `Date` drops, and an exact-expiry
comparison silently skipped the real lease in the live reproduction.
- `doc/execution-semantics.md`: documents the rule.

## Verification

- Red then green on embedded Postgres
(`server/src/__tests__/heartbeat-native-restart-suspension.test.ts`):
- A hard kill with a dead controller's executor lease (first claim,
restart claim, or resumed claim) now finalizes on the next startup: run
`succeeded`, finalization `committed`, task `done`, one result, one run,
no provider dispatch. These tests failed before the fix with `status:
running`.
- A lease expiry stored with microsecond precision is released. This
test failed against the first version of the fix and reproduces the live
miss.
- A live controller of another boot keeps its lease, and so does a lease
of the current boot.
- A live claimant's finalizer or cleanup lease is kept when the recorded
earlier executor is dead.
- `npx vitest run
src/__tests__/heartbeat-native-restart-suspension.test.ts`: 20 passed.
- Related suites pass: `native-session-resumption`,
`native-runner-restart-recovery.integration`,
`native-run-projection-work`, `live-recovery-work`. One
`live-recovery-work` legacy case timed out once under load and passed
when run again by itself.
- Live, local: `tests/restart-chaos/main.ts --workloads C1 --triggers
result --faults K1 --rc06-masked`. The failing case above came from such
a wave. I started its kept database and confirmed the stored lease state
and the compare-and-set miss. Against that same database, the fixed
release expires the stuck executor lease. Two later waves (12 tasks,
`--triggers result`) passed every task. Run events were not kept for
passing tasks, so I cannot confirm that a kill landed in the narrow
pre-finalization window in those waves.

- Live proof on head `8971874654`: local ACPX Claude, workload A1, seed
7411, `--triggers result` (a local variant that fires on A1 2.5–3.5 s
after the run's result proposal), `--keep`. The run passed 4 of 4 tasks.
In two tasks, K1 landed 1.5 s and 2.0 s after `run.result.accepted`. On
the next startup, each run recorded "Server restart released the
accepted native result of a stopped controller for finalization"
(`controller_process_dead`). Each finished `succeeded` about 1 s later,
with its task `done` and exactly one run per task (no extra provider
turn). Before this fix, the same shape stayed `running` until the
10-minute budget ran out (seeds 7411, 7422, and 7423 from the RC-33b
investigation in #19691).

## Risks

- Startup could take a lease from a finalizer that is still running.
Mitigations: the lease must belong to another boot, the controller
process must be proved stopped on this host (the same proof the existing
runner takeover uses), and the update matches the exact owner. Remote
workspaces are excluded. Multi-host deployments keep the existing
PID-liveness assumption that `claimNativeRestartRecoveries` already
makes.
- Low behavioral risk otherwise: finalization uses the existing
reconciler path, which #19591 already exercises after a graceful drain.

## Model Used

- Claude Opus 5.5 (`claude-opus-5-5`), Anthropic, run as an agent in
Claude Code with tool use (shell, file editing, local test execution,
live restart-chaos waves).

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have searched GitHub for duplicate or related PRs and linked
them above
- [x] I have either (a) linked existing issues with `Fixes: #` / `Closes
#` / `Refs #` OR (b) described the issue in-PR following the relevant
issue template
- [x] I have not referenced internal/instance-local Paperclip issues or
links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip`
URLs)
- [x] My branch name describes the change (e.g. `docs/...`, `fix/...`)
and contains no internal Paperclip ticket id or instance-derived details
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [ ] All Paperclip CI gates are green
- [ ] Greptile is 5/5 with no open P2s, recommendations, or follow-ups
- [x] I will address all Greptile and reviewer comments before
requesting merge

🤖 Generated with [Claude Code](https://claude.com/claude-code)

---------

Co-authored-by: Claude Opus 5.5 <noreply@anthropic.com>
2026-11-06 21:22:24 -06:00
DottaandClaude Opus 5.5 08f7ac03dc fix(recovery): keep a never-started task waiting through a temporary accounting hold (#19702)
## Thinking Path

> - Paperclip is the open source app people use to manage AI agents for
work
> - Admission checks every wake. A short company accounting hold can
refuse new work after a control-plane restart.
> - When the hold refused a new task's assignment wake, stranded-work
recovery found the task with no run while the hold was still active. It
moved the task to `blocked` with a board recovery comment.
> - A `blocked` task leaves the stranded-assignment sweep, so nothing
woke it after the hold cleared. The task stayed `blocked` with no run,
no interruption and no Retry.
> - The hold was temporary. Tasks created a few seconds later (after the
sweep) started normally once accounting settled.
> - This pull request keeps a never-started task `todo` while a
temporary budget hold lasts. The existing assigned-todo liveness
dispatch then admits it once the hold clears. The task shows the hold it
waits for.
> - The benefit is that a restart no longer silently drops new tasks
created during the accounting settle window.

## Linked Issues or Issue Description

**What happened?**
In a restart-chaos storm on master `06bbcea12f`, three new tasks were
created while the company accounting hold was active. Each assignment
wake got 409 "Company cannot start work while completed runs await
accounting." (or "...native run recovers its unfinished accounting.").
One task rested `blocked` with 0 runs, interruption `null` and
`canRetry=false`. The other two ran later.

**Root cause**
`reconcileStrandedAssignedIssues`
(`server/src/services/recovery/service.ts`, the
`readInvocationBudgetBlock` branch near line 4826) escalates any
assigned task to `blocked` when a budget block exists. It does this
before the assigned-todo no-run branch, which already skips a
budget-blocked task and dispatches it later. So a task that never
started was treated as failed recovery work. The refused wake itself is
stored as a `skipped` `budget.blocked` diagnostic, which is correct; the
escalation removed the only path that re-admits it.

**Expected behavior**
A wake refused by a temporary admission hold waits and is admitted once
the hold clears, with one run. A real hard stop is still a board
decision. Removed assignees and cancelled tasks still do not wake.

**Steps to reproduce**
Create a company with a hard-stop budget and a completed run that has
`cost_accounting_pending = true`. Assign a new `todo` task. The wake
gets 409. Run the stranded-assignment sweep. Before this change the task
becomes `blocked` and never runs.

Related: #19700 bounds the accounting hold itself. This PR is
independent: it handles what happens to a task whose first wake the hold
refused.

## What Changed

- Stranded-work recovery skips a `todo` task with no run while a
temporary budget hold blocks admission. It does not escalate it to
`blocked`. The existing assigned-todo liveness dispatch admits the task
once the hold clears.
- A hard stop (spend at the limit, or blocked unpriced usage) keeps the
existing board escalation. Recovery checks this with the read-only
`policyBlocks` for the policies of the blocking scope. It does not
change budget hold semantics.
- The task interruption projection now covers a `todo` task with no run
whose latest wake was refused with `budget.blocked`. It shows "Waiting
for the budget to allow new work. The task starts automatically when it
does." with no Retry. A budget pause shows the existing "budget" user
action.
- The no-run projection applies the same person-owned gates as the
run-backed projection: a budget pause shows the "budget" action, and an
ordinary agent, project, company or task pause shows "resume". Only an
accounting hold shows the automatic-start text.
- `ExecutionBlockerNotice` shows that wait text for a `working`
presentation that carries a wait reason.
- `doc/execution-semantics.md` records the rule.

## Verification

- New embedded-Postgres regression
`server/src/__tests__/heartbeat-refused-assignment-wake.test.ts`:
- hold active, new task assigned, wake refused (409, `skipped`
`budget.blocked`), two recovery sweeps: the task stays `todo` with no
run and shows the wait reason. Before the fix this failed with `expected
'blocked' to be 'todo'` (the CHA-9 shape).
- hold cleared, two sweeps: exactly one provider turn starts, from
`issue.assigned_todo_liveness_dispatch`, and the task finishes. A later
sweep does not start another turn.
- counter-tests: a terminated assignee and a cancelled task get no run
after the hold clears.
- Existing `creates a board recovery action for budget-blocked assigned
work` (real hard stop) still passes unchanged.
- `pnpm exec vitest run
src/__tests__/heartbeat-refused-assignment-wake.test.ts
src/__tests__/heartbeat-process-recovery.test.ts
src/services/task-interruption-presentation.test.ts
src/__tests__/heartbeat-issue-liveness-escalation.test.ts` (server) and
`src/components/ExecutionBlockerNotice.test.tsx` (ui).
- Server typecheck and `pnpm check:token-gates`.
- Live restart-chaos storm (local, codex/claude/opencode, 6 in flight,
K2 every 3-4 minutes for 20 minutes, no RC-06 mask), revision
e38bb5c8f7: 17 tasks, 10 pass.
- Two new tasks (CHA-16, CHA-17) were created while the company
accounting hold was active. Their assignment wakes got 409 "Company
cannot start work while completed runs await accounting." Both stayed
`todo` (not `blocked`) and showed `state: working`, `canRetry: false`,
`retryWait.reason: budget.blocked`, "Waiting for the budget to allow new
work. The task starts automatically when it does." No task rested
`blocked` with 0 runs.
- The hold itself never cleared in this wave (`pendingRunCount: 1` at
wave end), so these two tasks did not start before their deadline. That
stuck hold is the separate accounting-closure defect that #19700 bounds.
The other 5 failures (`R3:retry_no_new_run:B5`) are Retries refused by
the same stuck hold. The re-admission after the hold clears is proved by
the embedded-Postgres regression above.

## Risks

- Low. The change narrows one escalation to tasks that never started,
under a budget block that is not a hard stop. Those tasks now stay
`todo` and are re-checked by the existing 30-second stranded-assignment
sweep, which already re-checks every admission gate.
- The hard-stop check reads the blocking scope's active policies once
per budget-blocked never-started task in a sweep. It runs only while a
hold is active.
- The interruption projection adds one indexed read (company + payload
issue id) for `todo` tasks in the batch.

> For core feature work, check [`ROADMAP.md`](ROADMAP.md) first and
discuss it in `#dev` before opening the PR. Feature PRs that overlap
with planned core work may need to be redirected — check the roadmap
first. See `CONTRIBUTING.md`.

## Model Used

- Claude Opus 5.5 (`claude-opus-5-5`), Anthropic, via Claude Code with
tool use (shell, file edits, test execution).

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have searched GitHub for duplicate or related PRs and linked
them above
- [x] I have either (a) linked existing issues with `Fixes: #` / `Closes
#` / `Refs #` OR (b) described the issue in-PR following the relevant
issue template
- [x] I have not referenced internal/instance-local Paperclip issues or
links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip`
URLs)
- [x] My branch name describes the change (e.g. `docs/...`, `fix/...`)
and contains no internal Paperclip ticket id or instance-derived details
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [ ] All Paperclip CI gates are green
- [ ] Greptile is 5/5 with no open P2s, recommendations, or follow-ups
- [ ] I will address all Greptile and reviewer comments before
requesting merge

🤖 Generated with [Claude Code](https://claude.com/claude-code)

---------

Co-authored-by: Claude Opus 5.5 <noreply@anthropic.com>
2026-11-06 21:12:00 -06:00
DottaandClaude Opus 5.5 8a34c1b62c fix(budgets): bound the accounting hold so one missing receipt cannot wedge a company (#19700)
## Thinking Path

> - Paperclip is the open source app people use to manage AI agents for
work
> - Pending run accounting holds new company work until it settles
(#19497, #19606, #19673)
> - A run settles only with closure evidence: a verified local stop, or
a terminated remote sandbox. Without that evidence it held the whole
company forever. In restart-chaos storm 4, a single run held 35 tasks
for hours
> - Two more shapes kept the hold alive. A run whose result had already
been accepted never counted as closed. A recovery that already owned its
held reservation was refused by other tasks' recovering accounting, so
concurrent recoveries waited on each other
> - This pull request bounds the hold, closes accepted-result runs on a
verified stop, and lets an owned recovery finish
> - The benefit is that no single missing receipt can wedge a company,
while genuinely unknown spend still surfaces under the blocking policy

## Linked Issues or Issue Description

Follow-up to #19497, #19606 and #19673.

**What happened?**
- Storm 4: run `f879895f` timed out in `session.open`. Its local stop
was never verified (its process identity is still recorded), recovery
ended in `terminal_failure`, and its receipt never became ready. From
then on, every new-work wake got 409 "New work must wait while a native
run recovers its unfinished accounting". That was 93 refusals, 35
blocked tasks, and no Retry.
- Storm 4: run `6d3c76bf` was resuming as the recovery owner with its
own held reservation. `reserveRunBudget` refused it because other tasks'
runs were recovering.
- Wave s7401: run `0a3a849d` failed after its result was accepted, with
a verified local stop. It had 10 receipts across 2 sources, all
incomplete with 0 tokens. It stayed "completed runs await accounting"
because closure only covered coordinators in terminal failure with no
result.

**What did you expect?**
A run without closure evidence holds new work only for a bounded time,
then settles visibly. An accepted-result run with a verified stop closes
like a terminal failure. A recovery that already owns admitted work can
finish.

**Steps to reproduce**
1. Restart the control plane during several native turns so that one
run's local stop is never verified.
2. Observe the run stay "recovering" and every new wake refused
indefinitely.

## What Changed

- `run-cost-accounting.ts`:
- A coordinator counts as settled when it ended in terminal failure
without a result, or when it has an accepted result. The verified-stop
and remote-termination closures use that rule, which covers the s7401
shape.
- A native run whose provider never started settles at once, like a
pre-provider failure, with no charge and its reservation released. Its
recovery has settled, no usage receipt was ever journaled (a provider
turn journals one as soon as it starts), and its local process never
launched or was verified stopped (wave s7403, run 3c1d7b70,
`session.open` timeout).
- New bound `ACCOUNTING_CLOSURE_TIMEOUT_MS`: the remote runner reconnect
grace (7 minutes) plus 3 minutes. A terminal native run with a settled
coordinator and no closure evidence settles at the bound:
- its known usage is recorded as unpriced (or estimated from the rate
card), with provenance evidence "closure evidence never arrived…";
    - it is marked `accountingClosureTimedOut`;
- a `cost.accounting_closure_timed_out` activity entry names the run.
- The reconciler selects these runs, and `readCostAccountingWork`
schedules a wake at the bound.
- `budget-exposure.ts`: a timed-out closure's final charge is exempt
from none of the unpriced-block exemptions. Under the `block` policy it
raises the normal budget notice ("recorded usage has no reliable price")
instead of a silent hold.
- `budgets.ts`, `budget-reservations.ts`,
`run-dispatch/adapters/postgres.ts`: when a validated recovery owner
continues admitted work, admission and both dispatch rechecks apply only
hard stops and pauses. Pending and recovering accounting holds still
gate new work.
- `doc/SPEC-implementation.md`: documents the bound, the accepted-result
closure and the provenance.

## Verification

- `closed-native-receipt-accounting.test.ts` (embedded Postgres). All of
these fail on master and pass here:
- s7401 shape (accepted result, verified stop, all receipts incomplete
with 0 tokens): settles and clears admission.
- A run without closure evidence: held before the bound with a scheduled
wake, then settled with the "closure evidence never arrived" provenance,
the `accountingClosureTimedOut` flag and an activity entry. Admission
clears under `allow`.
- Storm 4 `f879895f` shape (terminal failure, recorded process identity,
no stop event): held, then released after the bound.
  - The blocking policy still blocks on a timed-out closure.
- s7403 shape (no receipts, model unknown): a run whose process never
launched, or was verified stopped, settles at once with no charge and
its reservation released. With an unverified process it waits for the
bound.
- Storm 4 `6d3c76bf` shape: a recovery owner with its held reservation
reserves past another task's recovering accounting, while new work for
another task still waits.
- Existing suites pass locally: budget-enforcement-scoping,
budget-enforcement-worker, native-stop-accounting, cost-data-quality,
heartbeat-cost-accounting, run-cost-accounting, budgets-service. Server
typecheck passes.
- The other storm 4 terminal-failure runs (`2e477ae9`, `e4d2e14d`,
`6d3c76bf`, `7d21a44c`, `4bc49df0`, `1d85fbd9`) were already settled by
#19673 in that database (`cost_accounting_pending=false`) and were not
holding admission. `f879895f` alone held it.

## Risks

- After the bound, a run whose provider might still be running settles
as unpriced. Under the `block` policy that raises a hard-stop budget
notice, by design. Under `allow`, work continues and a late receipt
still reconciles.
- A recovery owner skips accounting holds, so concurrent recoveries can
spend while other tasks' accounting is unknown. Hard stops still apply,
consistent with best-effort budget enforcement.

## Model Used

- Claude Opus 5.5 (`claude-opus-5-5`), Anthropic, via Claude Code with
tool use (shell, file editing, embedded Postgres tests).

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have searched GitHub for duplicate or related PRs and linked
them above
- [x] I have either (a) linked existing issues with `Fixes: #` / `Closes
#` / `Refs #` OR (b) described the issue in-PR following the relevant
issue template
- [x] I have not referenced internal/instance-local Paperclip issues or
links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip`
URLs)
- [x] My branch name describes the change (e.g. `docs/...`, `fix/...`)
and contains no internal Paperclip ticket id or instance-derived details
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [ ] All Paperclip CI gates are green
- [ ] Greptile is 5/5 with no open P2s, recommendations, or follow-ups
- [x] I will address all Greptile and reviewer comments before
requesting merge

🤖 Generated with [Claude Code](https://claude.com/claude-code)

---------

Co-authored-by: Claude Opus 5.5 <noreply@anthropic.com>
2026-11-06 21:02:01 -06:00
18be7ac696 fix(server): retire idle native sessions before tenant sleep (#18988)
## Thinking Path

> - Paperclip lets people manage AI agents and their work.
> - Native agents can retain a warm session between useful turns.
> - That owner must close and save its files before the tenant can
sleep.
> - A failed close must keep the owner visible until retirement
succeeds.
> - This PR prepares idle resources under the exact current admission
hold, then takes a fresh safety snapshot.
> - Busy turns, uncertain closure and changed holds still prevent sleep.
> - CI also exposed a chat authorization race. The fix repeats full
authorization after the exact delivery commits.

## Linked Issues or Issue Description

Refs #18639 for local work and incoming wake boundaries. Related #18829
covers suspension receipts after admission.

**What happened?**

Idle preflight did not retire warm Native owners. Three failed-close
paths could forget an owner without proving that its provider stopped.
CI also found a false chat rejection when a delivery changed from
processing to processed between two validation reads.

**Expected behavior**

Retire only idle owners under the exact bounded hold. Wait for closure
and file collection. Retain failed owners. Scan safety after
preparation. Keep diagnostic reads passive. A newly committed chat
delivery must pass the full current authorization checks before
attestation succeeds.

**Steps to reproduce**

Finish a warm Native turn. Start an idle drain and request safety with
its owner ID. Delay or reject provider closure, or replace the hold
during preparation or scanning. The report must keep the instance awake.
For the chat race, commit the exact delivery between the first binding
read and its fallback read.

**Paperclip version or commit**

Current head `7f6f02b611dcf5a9a2b05173a44e9631eaf78058` normally
integrates actual master `1aa0c3639714f4976cfa56f95aae6e2b7d1235ac`. The
merge preserves every unrelated master path. Fresh exact-head CI and
complete review remain required.

## What Changed

- Retain uncertain Native owners after failed restart, idle timeout and
failed-turn closure.
- Prepare Native retirement through the existing heartbeat facade. Reuse
provider closure and stopped-file collection.
- Track preparation under the exact idle owner and expiry. Reject new
activity, changed holds and expired holds before and after awaited work.
- Take the final durable and local safety snapshot after preparation.
Keep diagnostic inspection passive.
- Cover ephemeral workspace retirement and useful next use, supported
plugin drain and SDK persistence, busy owners, failed closure and hold
replacement.
- Keep dedicated recovery storage explicit. Use the same validated
options for support and storage. Probe-free helpers retain the original
implementation bodies and preserve default callers.
- Complete the Native fixture through real retirement and budget
evaluation. Keep its rejection, file, credential, accounting and strict
NONE assertions.
- Repeat the complete chat authorization once if the fallback sees the
exact batch now processed. Preserve owner locks, principal and binding
checks, denial handling and the original retry deadline.

## Verification

- The support-mode regression reproduces one failure with four passes
under the old policy, then passes all five controls. It retains prior
allocation and cleanup cases. The explicit mode does not probe embedded
PostgreSQL or use an admin alias.
- The deterministic chat race baseline reproduces two authorized
failures with all four current-authority denial controls passing. Both
Slack and Discord use real PostgreSQL and the real authorization
function. The negative setup commits before the attestation transaction;
it does not claim to revoke access through a row lock.
- The product fix passes normal own App declaration emission with no
public declaration changes, plus both current normal owning compiler
programs (399 and 611 roots). The same six controls pass after the fix.
The full original file plus these controls passes all 30 tests with no
skips.
- The original controlled Native continuation passes: one test, no
failures or skips, 1.718 seconds in its body and 23.138 seconds in its
launcher. The original 40-second case and 180-second outer bounds are
unchanged. It verifies held closure, strict NONE, an ordinary authorized
comment, saved session/files, useful output, encrypted credentials,
accepted results and settled accounting. All ten observed processes and
groups close; worker connections and listeners reach zero. A separate
post-owner audit finds zero sessions; the successful owned database is
normally removed.
- Earlier preparation, HTTP, lifecycle, workspace and plugin controls
remain source-specific evidence. They are not a claim that every
final-tree test ran locally.
- The original CI assertion log is retained. The controlled race proves
a possible cause; the original CI SQL schedule was not captured. Two
other jobs lost their self-hosted runners and provided no test verdict.
Earlier asset timeouts, readiness failures and unexplained later
recovery remain separately recorded. No timeout, failure predicate or
authority check was weakened.

Focused public commands:

```sh
pnpm exec vitest run server/src/__tests__/idle-sleep-preparation.test.ts server/src/__tests__/instance-settings-routes.test.ts --maxWorkers=1 --no-file-parallelism
pnpm exec vitest run server/src/__tests__/heartbeat-reviewed-chat-binding.integration.test.ts --maxWorkers=1 --no-file-parallelism
```

Local database qualification uses fresh owned test databases on existing
PostgreSQL, bounded pools and one worker. The local allocation adapter
changes only database allocation for this test module; it runs normal
migrations and client cleanup. It is not part of the published source.
No new cluster is created.

Local acceptance measured the `0a69efa6` integration with the same
committed authorization bytes. The later normal master merge adds
startup-timeout classification and recovery changes. Those paths are
outside the controlled healthy-backend witness; retirement and
authorization hunks are preserved. Exact-head remote CI at
`7f6f02b611dcf5a9a2b05173a44e9631eaf78058` has completed with 56
successful contexts and four skips. The complete current Greptile
summary is5/5 with no new actionable findings; all review threads are
resolved. Ponytail’s current turn is explicitly paused without a
current-head verdict; earlier actual findings are fixed and accounted
for. No whole final-tree local repository build/test run, live-provider
restore or deployed suspension is claimed.

Actual master subsequently advanced to
`d5c4f7dd02d408a261cedd9a1926b9900a4aedc4`. Its local normal-merge
projection with this reviewed head preserves all20 owned paths and every
unrelated master blob and mode. Current Runner TypeScript, App
declarations and their full owning compiler programs pass. Focused
Native cleanup and warm-continuation composition checks are being
completed before merge; the new upstream suspension-retry behavior is
not inferred from the older controlled-backend witness. The remote PR
head remains unchanged.

## Risks

- Privileged idle preparation can close idle warm Native sessions. It
requires the exact current hold.
- Failed closure retains its owner and can keep the tenant awake until
normal retry succeeds.
- A changed hold cannot authorize sleep. Started cleanup remains tracked
until it settles.
- The chat repair can perform one extra full authorization read. It
keeps the existing deadline and does not grant authority from the
fallback query.
- Unsupported resources and active work retain their existing blockers.
This PR does not certify every transport, plugin or deployed host.

## Model Used

OpenAI `gpt-6.1-sol` produced the delegated changes and verification.
OpenAI Codex, based on GPT-6, performed managing review and integration.
Both used repository tools and code execution. The coordinator's exact
backend snapshot and context-window limits were not exposed.

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have searched GitHub for duplicate or related PRs and linked
them above
- [x] I have either (a) linked existing issues with `Fixes: #` / `Closes
#` / `Refs #` OR (b) described the issue in-PR following the relevant
issue template
- [x] I have not referenced internal/instance-local Paperclip issues or
links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip`
URLs)
- [x] My branch name describes the change (e.g. `docs/...`, `fix/...`)
and contains no internal Paperclip ticket id or instance-derived details
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [x] All Paperclip CI gates are green at exact head
`7f6f02b611dcf5a9a2b05173a44e9631eaf78058`
- [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups
at the exact current head
- [x] I will address all Greptile and reviewer comments before
requesting merge

---------

Co-authored-by: Paperclip <noreply@paperclip.ing>
Co-authored-by: Codex <noreply@openai.com>
2026-11-06 20:49:30 -06:00
DottaandClaude Opus 5.5 a5fe5deebe fix(environments): reclaim sandboxes left by a restart during acquire or teardown (#19696)
## Thinking Path

> - Paperclip is the open source app people use to manage AI agents for
work
> - Remote agent runs execute in provider sandboxes (for example
Daytona) that Paperclip creates and must clean up
> - Before each provider create, Paperclip saves a durable creation
intent (`sandbox_creation_operations`). Recovery uses it to find and
destroy a sandbox whose lease was never committed
> - Recovery waited 30 minutes after creation before it checked an
intent, because a live server could still be waiting for the provider
> - After a restart, the creating server is gone, but the intent still
waited the full 30 minutes. A short-lived or redeployed instance never
reclaimed those sandboxes
> - The teardown that follows has the same problem: a teardown claim
fences other sweeps for 15 minutes, and a restart during the claim kept
the sandbox alive until the fence expired
> - This pull request saves the server process identity with each intent
and each teardown claim, and ends the wait when same-host proof shows
that process exited
> - The benefit is that a restart during sandbox acquire or teardown no
longer leaves paid provider sandboxes behind

## Linked Issues or Issue Description

**What happened?**
A control-plane restart during Daytona sandbox acquire left the created
sandbox without an `environment_leases` row. In one restart chaos wave,
6 creation intents stayed `pending` with `next_attempt_at` = creation +
30 minutes. The wave ended (and its environment was deleted) before that
time, so 4 sandboxes stayed `stopped` in Daytona. Only Daytona's own
auto-delete would remove them. Two of the runs did not exist in
`heartbeat_runs` because they were non-run acquires; their intents still
had the run id.

**Expected behavior**
After a restart, each sandbox that this instance and company created,
with no committed lease and no live creator, is found by its exact
creation name and labels and destroyed through the plugin, after the
existing ownership checks. Sandboxes from another instance, another
host, or a live server stay untouched. Nothing acts org-wide.

**Steps to reproduce**
1. Start a Daytona-backed run.
2. Kill the server (SIGKILL) after the creation intent commits and
before the lease commits.
3. Restart the server. On master, the intent stays `pending` for 30
minutes and the sandbox stays in Daytona.
4. The regression tests in
`server/src/__tests__/sandbox-creation-operations.test.ts` reproduce
this with the controlled provider fixture.

Refs #18357 (added the durable creation intent this change completes).

**Paperclip version or commit**
master 07a548073a (live proof at 8d525dba7d + this change,
content-matched to the runner image)

## What Changed

- New `server/src/services/controller-process-identity.ts`: records the
server boot id, PID, a PID-space hash and the process start time. The
PID-space hash covers the hostname, the kernel boot id and the PID
namespace on Linux (the hostname and boot time elsewhere), so containers
that share a hostname but not a PID namespace never judge each other. It
proves that a recorded process exited only in the same PID space: the
PID is gone, or the PID is live with a definitely different start time.
Another PID space, an unreadable identity, an unidentified record, or
this server never counts as exited.
- `sandbox-creation-operations.ts`: each creation intent stores the
creating process and its settle deadline. Each recovery pass first moves
intents whose creator exited to "due now". If the early lookup finds no
sandbox before the settle deadline, the intent stays `pending` and
retries. It does not become manual reconciliation, because the provider
can still materialize an aborted request.
- `heartbeat/recovery.ts`: each pending-cleanup teardown claim stores
the claiming process, bound to its claim attempt id. Before the sweep
reads due leases, it ends the 15-minute fence of a claim whose claimer
exited. A newer claim from another path (workspace repair, export retry)
that kept an older record has a different attempt id, so it is never
released.
- Both recovery passes page through candidates with a stable id cursor.
Live, foreign or unidentified owners therefore cannot hide an abandoned
record behind one page.
- This covers every `createOwnedSandbox` caller, including non-task
probe and qualification acquires. Their intents have no issue and a
generated run id, which is why their run ids are missing from
`heartbeat_runs`.
- Recovery uses only the existing paths: exact
`paperclip-create-<operation id>` name and label inspection in the
plugin, `pending_cleanup` lease, and plugin teardown. No org-wide
listing or deletion was added.

## Verification

- Red, then green (controlled provider fixture, real embedded
PostgreSQL):
- `sandbox-creation-operations.test.ts` → "after the creating server
exits mid-acquire". Before the fix, the exited-creator case left no
cleanup lease. After the fix, the next sweep creates the
`pending_cleanup` lease and the teardown destroys the sandbox.
Counter-tests: a creation owned by this live server, another live
process, another host, or a committed lease is not inspected or
destroyed. An early "not found" keeps the intent pending, and a later
sweep still finds a late allocation.
- `heartbeat-pending-cleanup-sweep.test.ts` → "a teardown claim whose
server stopped mid-attempt". Before the fix, a lost claim blocked the
teardown. After the fix, it retries now. Counter-tests: claims from this
live server, another host, or without an identity keep their fence.
- Review regressions: "keeps the fence of a newer claim that kept an
earlier attempt's server record" and "pages past more fenced claims than
one sweep page" fail on the previous commit and pass now. "pages past
more unprovable creations than one page" guards the creation-side
cursor; the old unordered page happened to include the row, so it was
not red.
- After the review changes, `sandbox-creation-operations`,
`heartbeat-pending-cleanup-sweep`, `live-recovery-work` and
`environment-cleanup-work` pass (155 tests), and `tsc --noEmit` for
`server` passes.
- Related suites pass: sandbox-creation-operations (28),
environment-cleanup-work, task-creation-recovery,
native-startup-cleanup-recovery, sandbox-orphan-cleanup-spool,
plugin-warm-tasks, idle-completed-history (187 total), and the
pending-cleanup sweep suite. `tsc --noEmit` for `server` passes.
- Live Daytona restart chaos wave `w-20261107T001609-s11` (codex, A1,
K2+K4, concurrency 2, RC-06 masked, image `sha256:2767e91c…`, first fix
only): 4/4 tasks pass, all restart-crossing, R6 pass for every task,
`orphanSandboxes: []`. The server log and database show two creation
intents killed by K4 being reconciled right after restart and destroyed
through Paperclip. A third reclaimed sandbox lost its teardown claim to
the next K4 kill in the same second, so its 15-minute fence blocked the
environment delete. The second commit fixes that.
- Live Daytona wave `w-20261107T012048-s11`, same plan, both commits:
**4/4 pass, all restart-crossing, R6 pass for every task,
`orphanSandboxes: []`, no held leases.** The environment delete through
Paperclip succeeded with `remainingSandboxes: []`. One restart-time
sweep destroyed one sandbox through the plugin.

## Risks

- Same-host proof relies on PID liveness and process start time, as
native controller takeover already does. A false "exited" result is
limited to recovery running early. The plugin still checks exact name
and labels before any delete. An early not-found result stays pending.
- Multi-host deployments sharing one database keep the old deadlines,
because a different PID space is never judged. A redeploy into a new
host or PID namespace also keeps the old deadlines (fail closed).
- The live waves ran before the review commits. The review commits only
narrow when a record is judged, and they add paging.
- Intents and claims written before this change have no process
identity, so they keep the old deadlines.
- No schema change. The new fields live in existing JSON metadata.

> For core feature work, check [`ROADMAP.md`](ROADMAP.md) first and
discuss it in `#dev` before opening the PR. Feature PRs that overlap
with planned core work may need to be redirected — check the roadmap
first. See `CONTRIBUTING.md`.

## Model Used

- Claude Opus 5.5 (`claude-opus-5-5`), Anthropic, via Claude Code with
tool use (shell, file editing, test execution). Extended reasoning
enabled.

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have searched GitHub for duplicate or related PRs and linked
them above
- [x] I have either (a) linked existing issues with `Fixes: #` / `Closes
#` / `Refs #` OR (b) described the issue in-PR following the relevant
issue template
- [x] I have not referenced internal/instance-local Paperclip issues or
links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip`
URLs)
- [x] My branch name describes the change (e.g. `docs/...`, `fix/...`)
and contains no internal Paperclip ticket id or instance-derived details
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [ ] All Paperclip CI gates are green
- [ ] Greptile is 5/5 with no open P2s, recommendations, or follow-ups
- [x] I will address all Greptile and reviewer comments before
requesting merge

🤖 Generated with [Claude Code](https://claude.com/claude-code)

---------

Co-authored-by: Claude Opus 5.5 <noreply@anthropic.com>
2026-11-06 20:39:34 -06:00
DottaandPaperclip d5c4f7dd02 fix: preserve shared Git sources during online workspace migration (#19688)
## Thinking Path

> - Paperclip preserves the work produced by its agents.
> - Remote workspace migration must preserve legacy Git history and
local edits.
> - Linked checkouts can share administration and objects with other
tasks.
> - A task lock alone cannot exclude writers of a shared or borrowed
store.
> - The online source owner must derive and retain the full physical
ownership closure.
> - This change reuses task, project, lifecycle and finalizer locks for
that closure.
> - Idle legacy Git work can then migrate while unrelated remote turns
continue.

## Linked Issues or Issue Description

Refs: #19642.

**What happened?**

Online migration keeps legacy Git sources blocked because several task
checkouts can share a project base or a private Git cache. A read-only
source observation found 160 pending Git records, 120 distinct paths and
nine common stores. Its largest project cohort contained 126 records and
110 task owners. An ordinary-directory fence cannot preserve these
sources by itself.

**Expected behavior**

Derive the physical source owners from stable Git metadata. Hold their
existing source and lifecycle keys through publication. Retain all
history and recovery obligations. Reject foreign aliases, unknown stores
and changed sources. Let unrelated object-backed work continue.

**Steps to reproduce**

1. Create a managed project checkout and linked task worktrees.
2. Keep a settled prepared recovery source on a sibling task.
3. Keep unrelated remote work running.
4. Request an online import of an idle leaf checkout.
5. The existing owner keeps the shared source blocked.

**Paperclip version or commit**

This branch builds on merged #19642 (`7ac99718a4`) and fresh master
`fb3cf1a072`. It adds the Git closure. It does not add a writers-stopped
shortcut.

**Deployment mode**

Hosted native Runner with remote workspace storage. Local qualification
uses owned synthetic Git repositories, disposable PostgreSQL databases
and the actual archive and storage owners.

## What Changed

- Read bounded stable Git pointers, common-directory metadata and local
alternates. Derive the complete physical source ownership cohort.
Preserve all object stores.
- Retain common and borrowed store owners in preparation, lifecycle,
runtime, expiration and actual reopen paths. Keep company boundaries and
the existing 128-key bound.
- Hold exact sibling native recovery proofs under their existing
physical finalizer keys. Recheck descriptors, allocations, recovery
actions and source identities before capture and publication. Preserve
original states and warnings.
- Require leaf-first nested imports. Reuse the existing immutable child
download, restore and source comparison before parent exclusion.
- Bind the self-contained archive owner to the held Git namespaces. Keep
its three walks, history normalization, fsck, bytes and digest format.
Reject bare, detached, network, unknown or changed Git storage.
- Check both foreign path fields. Keep foreign metadata private.
Document the proof, bounds, source observation and remaining eligibility
limits.

## Verification

- Final revision `2934e41c923b93e16508b978c849b747c86be645`: all checks
are terminal, with 56 successful and four skipped, zero failures and
zero pending. The [required CI
aggregate](https://github.com/paperclipai/paperclip/actions/runs/42326464408/job/128266279210)
passed. Build, types, all server/Runner/serialized suites, end-to-end
aggregate and Snyk passed. [Fresh exact-head Greptile
review](https://github.com/paperclipai/paperclip/pull/19688#issuecomment-6699760104)
is 5/5 with no open threads. GitHub reports MERGEABLE and CLEAN.

- Review then found two correctness gaps: an ordinary managed directory
inside an unrelated host repository was blocked, and a Git parent could
miss a completed nested operation after its child snapshot became
missing or deleted. Three actual-owner regressions reproduced both gaps
in 9.70 seconds. The corrected owner passes 12 focused cases in 17.08
seconds. It imports and restores only the ordinary root bytes, preserves
the outer repository, rejects both missing/deleted child receipts before
a parent journal, and retains valid/changed child coverage and
private-cache contention. Its wrapper exited 0 and cleanup completed.
The first bootstrap attempt failed before tests ran because the host
exhausted its 32 shared-memory segment limit; no shared services were
stopped and no pass is claimed for that attempt. The final qualified
source/test type graph, module boundaries and diff checks pass.
- Receipt scans keep canonical path resolution. A lexical SQL prefix can
omit children reached through symlinked ancestors. The observed full
metadata closure completed in 1.17 seconds; no measured bottleneck
justifies weakening that alias proof. Writer admission still rejects
uncertain Git ownership before mutation. Expiration returns its typed
skip, and reopen returns its structured failure. Runtime and lifecycle
do not bypass an unknown source. No broad error-contract change was
added.

- Full CI at `720104ea975e` exposed five existing boundary cases across
three server shards. Four exact cases reproduced locally as failures in
25.98 seconds. Reopen now preserves its structured failure when source
inspection rejects the path, without reconstructing it. Runtime
recognizes only the exact regular ignore-only `.git/info/exclude`
fragment; migration still rejects that fragment. The original
arbitrary-path and file-URL import/delete-host/resume fixtures keep both
supported input forms and use the genuine offline setup path after their
sole writer finishes. The production mode gate is unchanged. A new
real-owner control proves the offline flag still rejects a running
legacy database writer.
- The final focused run passed all ten cases across four suites in 22.75
seconds, including all five CI failures, invalid-pointer admission,
fragment rejection, offline writer exclusion and actual nested reopen
lock ordering. Its wrapper exited 0 and cleanup completed. The known
invalid-pointer case remains fail-closed; the separate unexpected-I/O
diagnostic retains safe error metadata without command text or
credentials. Existing Git stderr redaction coverage remains intact. The
final metadata reader suite passed 20 cases in 2.68 seconds. The
qualified server/test source type graph, module boundaries and diff
checks pass. No production assertions or timeout defaults were weakened.
Fresh CI and review are required for the repair revision.

- A later review found that the ordinary early return still used only
one foreign path field. The actual ordinary providerRef-only regression
failed as incorrectly eligible. One source-path owner now enumerates
both local locators for company/foreign ordinary and Git scans, layout
checks, early admission, lifecycle/reopen/runtime and
expiration/move/preparation retention. Capture and display keep their
original preferred path. The actual owner canary passed 49 cases across
two suites in 109.15 seconds. It covers
cwd-only/ref-only/different/symlink locators, same-company mismatches,
foreign owners, lifecycle ordering, Git/recovery imports and
expiration/reopen. Three selected-locator fallback cases also failed
before their guard; the final eight-case control passed in 31.05
seconds, including the configured alias and valid import/private-child
controls. All wrappers exited 0 and completed cleanup. The
metadata/locator suite passed 19 cases. The final source/test type
graph, module boundaries and diff checks pass.

- Review found two P1 gaps. Both configured-directory symlink cases
failed before canonicalization. The actual parent import lost an
already-imported child's unique private cache and failed its archive
fence instead of retaining that owner. The corrected real-owner canary
passed four cases in 20.78 seconds: configured symlink runtime
provisioning, private-cache contention before the parent journal,
successful parent publication after release, and unchanged/changed child
coverage. The metadata suite passed 15 cases in 4.14 seconds. Both
wrappers exited 0 and cleanup completed.
- A fresh source read-only observation found 160 pending Git records and
nine common stores. An additional exact receipt query found 1,243
completed migration receipts and 557 nested source paths under pending
Git roots. All 126 records in the largest project were present in the
captured Git metadata set. For all 110 present candidate workspace
records, the derived closure fits the unchanged 128-key cap. The worst
case needs 110 issue keys and one project key, with 17 keys of headroom.
Its 173 imported children introduce no physical issue owner outside
those 110 logical task owners. This checks the observed key bound only.
It does not claim migration eligibility or a coherent snapshot.
- The initial stacked CI did not run four Runner test lanes: trusted
master passed new --package-lane/--native-server options to the old base
lane script. The branch is now rebased onto actual merged master and
retargeted before synchronization. It includes the canonical current
lane parser without an unrelated Runner patch. Fresh new-head CI is
required.

- The actual importer/source owner run passed 36 cases across three
suites in 187.75 seconds. It covers sibling prepared recovery, unrelated
running remote work, common-cache contention, changed
coordinator/allocation/path state during upload, exact nested coverage,
dirty unpushed work, and existing expiration/reopen owners. Wrapper exit
0 and cleanup completed.
- A separate previously hanging lifecycle-worker restore passed in 17.33
seconds with the unchanged 15-second test-body limit. An earlier run
timed out in three expiration/reopen cases and blocked cleanup; its
wrapper later exited 1. These failures remain recorded. They are not
counted as passes.
- Two boundary controls first failed: a foreign providerRef-only alias
was incorrectly eligible, and actual reopen did not admit its distinct
cache owner at the initial source boundary. The narrow guards now
inspect both foreign locators and derive physical Git keys before the
raw lifecycle transaction. The foreign alias and existing real nested
reopen contention passed. The private-cache control first retained
contradictory recorded source provenance and stayed fail-closed after
release. The corrected present legacy-worktree fixture passed in 12.61
seconds. These failed attempts remain recorded; they are not passes.
- The metadata reader and serialized/local archive controls use actual
Git repositories. They compare archive bytes and digests, remove every
original source, restore staged and unstaged work, and run fsck. The
metadata reader passed 13 cases in 2.85 seconds. The local/serialized
archive controls passed nine cases in 9.27 seconds. All processes exited
0. An additional actual importer control changed a relative commondir
pointer to the absolute name of the same store during upload.
Publication was rejected, the uploaded journal remained available, and
original files stayed intact (one case, 5.86 seconds; wrapper exit 0 and
cleanup complete).
- The final rebased full local server/test type graph passes with
db/shared/Runner source aliases because reused dependency declarations
predate new master exports. The first rebased attempt reported those
stale declaration fields/tables, and is not counted as a pass. Module
boundaries and diff checks pass. Standard package builds, types and
broad regression checks remain required in CI.
- No hosted import, admission hold, cancellation, provider mutation,
source filesystem write or shared-cache Git command was performed for
this change. The source observation is read-only and is not a locked
eligibility proof.

## Risks

- A missing writer owner could make physical source exclusion
incomplete. Existing mutation owners retain the same
company/task/project keys, and uncertain metadata fails closed.
- A project can contain a large cohort. Limits remain finite. A bound
failure keeps the source blocked.
- Bare, detached, unowned or network Git stores remain blocked online.
Missing archived sources retain their existing authenticated
reconstruction path.
- Exact recovery proofs preserve authority and obligations. They do not
infer provider termination or mark a prepared descriptor finalized.
- This change does not claim all observed Git records are immediately
eligible. Existing preparation, provider, recovery, runtime and
source-change blockers remain.

## Model Used

OpenAI GPT-6 through Codex, with reasoning, tool use and code execution.
The host does not expose a more specific backend model ID or
context-window size.

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have searched GitHub for duplicate or related PRs and linked
them above
- [x] I have either (a) linked existing issues with `Fixes: #` / `Closes
#` / `Refs #` OR (b) described the issue in-PR following the relevant
issue template
- [x] I have not referenced internal/instance-local Paperclip issues or
links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip`
URLs)
- [x] My branch name describes the change (e.g. `docs/...`, `fix/...`)
and contains no internal Paperclip ticket id or instance-derived details
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [x] All Paperclip CI gates are green
- [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups
- [x] I will address all Greptile and reviewer comments before
requesting merge

---------

Co-authored-by: Paperclip <noreply@paperclip.ing>
2026-11-06 20:08:19 -06:00
DottaandClaude Opus 5.5 d26372dc8a test(restart-chaos): add a result trigger and recovered-run comment-wake guards (#19689)
## Thinking Path

> - Paperclip is the open source app people use to manage AI agents for
work
> - The restart chaos harness kills the control plane at chosen moments
and grades whether each task still finishes correctly
> - One wave lost a user's follow-up comment after a kill that landed
after the run accepted its result but before the run settled
> - No existing trigger aims a fault at that moment, so the case was
hard to reproduce on purpose
> - The recovery path that settles such a run had no regression test
that covers the saved comment
> - This pull request adds a `result` trigger to the harness and a
regression test for the recovery path
> - The benefit is that the harness can aim faults at the
result-accepted window, and a change that drops, repeats, or re-wakes a
saved comment fails a test

## Linked Issues or Issue Description

**What happened?**
In a restart-chaos storm wave, a user posted a comment while a native
run was active. A hard kill (K1) landed after the run accepted its
result and before the run settled. The run settled `succeeded` and the
task stayed `done`, but no follow-up run read the comment.

**Steps to reproduce**
The original failure did not reproduce. Three targeted waves ran 12
tasks with K1 at comment time or in the new result window. Every
follow-up comment was consumed exactly once. The new regression test
also passes on current `master`. The test and the trigger guard the path
and do not claim a fix.

**Expected behavior**
A comment posted during a run is consumed exactly once after the run
ends, including when restart recovery settles the run.

## What Changed

- `tests/restart-chaos`: add `--triggers result` (C1 only). K1 fires 0–3
s after the run that received the follow-up proposes or accepts its
result (`run.result.proposed` or `run.result.accepted`). The fault fires
only while that run is still `running`: the observer checks the latest
sample and rereads the runs right before dispatch. A run that settled
during the delay, or a follow-up posted at rest, records a `result`
miss. Add poll-driven unit tests for these cases and a README row.
- `server/src/__tests__/native-run-projection-work.test.ts`: add
embedded Postgres tests in which background recovery, not the executor,
settles the run (projection, environment settlement, and
deferred-receipt workers), with a deferred user comment and an active
local lease left by the killed executor. The tests check:
- The comment is promoted into exactly one follow-up run, and a second
restart adds none.
- A comment the run already received as a same-turn steer is not woken
again. The other saved comment still is.
- A queue whose only comment was steered stays cancelled, and no
follow-up starts.
- A Retry click does not consume the comment a second time. A click that
observed the source is stale. A click that observed the follow-up joins
it.

## Verification

- `cd tests/restart-chaos && npx vitest run --config vitest.config.ts`
(96 tests pass)
- `cd server && npx vitest run
src/__tests__/native-run-projection-work.test.ts` (54 tests pass)
- Live, local, ACPX Claude, Codex and OpenCode: `node
cli/node_modules/tsx/dist/cli.mjs tests/restart-chaos/main.ts --env
local --workloads C1 --triggers comment --faults K1 --adapters
codex,claude,opencode --tasks 4 --concurrency 2 --rc06-masked` passed 4
of 4. Two waves with `--triggers result` consumed each follow-up exactly
once. One task in those waves found a separate defect: a kill 1.4 s
after the result commit left the run `running` behind the dead
controller's 20-minute finalization lease. A separate pull request fixes
that defect.

## Risks

- Low risk. These are test and harness changes only. No production code
changes.
- The `result` trigger depends on the observer's poll interval (about 3
s), so the exact kill point within the window varies.

## Model Used

- Claude Opus 5.5 (`claude-opus-5-5`), Anthropic, run as an agent in
Claude Code with tool use (shell, file editing, local test execution).

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have searched GitHub for duplicate or related PRs and linked
them above
- [x] I have either (a) linked existing issues with `Fixes: #` / `Closes
#` / `Refs #` OR (b) described the issue in-PR following the relevant
issue template
- [x] I have not referenced internal/instance-local Paperclip issues or
links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip`
URLs)
- [x] My branch name describes the change (e.g. `docs/...`, `fix/...`)
and contains no internal Paperclip ticket id or instance-derived details
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [ ] All Paperclip CI gates are green
- [ ] Greptile is 5/5 with no open P2s, recommendations, or follow-ups
- [x] I will address all Greptile and reviewer comments before
requesting merge

🤖 Generated with [Claude Code](https://claude.com/claude-code)

---------

Co-authored-by: Claude Opus 5.5 <noreply@anthropic.com>
2026-11-06 19:53:58 -06:00
DottaandPaperclip 5e4d24b6c8 fix(recovery): preserve admitted workspace on native restart (#19693)
## Thinking Path

> - Paperclip manages AI agents and their work.
> - A Retry can admit a new workspace before native provider work
starts.
> - The native execution input records that admitted workspace.
> - A server restart must recover the same run under that recorded
contract.
> - Retry readiness previously evaluated fresh admission again after the
run had started.
> - This could replace the workspace and make the retained lease fail
its correct identity checks.
> - This change keeps the admitted workspace and leaves reattachment
authority with the existing lease and controller checks.

## Linked Issues or Issue Description

**What happened?**

A native run started by Retry could do useful work, then fail after a
server restart. Preparation evaluated the original fresh-workspace
receipt again. It reserved a replacement workspace under the Retry
intent ID. The existing runner still owned the original workspace, so
setup failed with `native_remote_recovery_lease_mismatch`.

**Expected behavior**

Restart recovery must retain the workspace recorded in the same run's
native execution input. A later configuration or admission decision must
not replace it.

**Steps to reproduce**

1. Admit a remote workspace for a Retry run.
2. Persist its native execution input and keep its original controller
and environment lease records.
3. Recover the same run while its canonical Retry receipt selects fresh
admission.
4. Preparation must reach the original lease with the original
workspace.

Related: #19340 preserves verified Retry workspaces. This change handles
an already admitted native run instead of selecting a workspace for a
new turn. Public duplicate searches for admitted/fresh workspace restart
found no matching repair.

## What Changed

- Stop fresh admission when a parsed native input names a real workspace
in the run's company.
- Validate the company, run, agent, and task binding before using that
input.
- Keep synthetic run-ID bootstraps on the existing admission path. Hold
missing real bindings.
- Test both recovery-action and ordinary user-Retry receipts against
real workspace, controller, and lease rows. Check malformed, foreign,
missing and opaque bindings, synthetic bootstrap behavior, and no-files
API controllers.
- Align the resume-owner fixture with the real transient run-ID binding.
Give each invocation a unique issue label so a CI test retry cannot mask
the original failure.

## Verification

- RED on unchanged production: the new reservation regression failed
with `native_remote_recovery_lease_mismatch` instead of reaching the
admitted lease.
- Review RED: an opaque task-workspace ID reached the UUID query. The
new guard returns the controlled missing-admission error before the
query.
- Review RED: a valid no-files Cursor controller was treated as a
missing task workspace. The existing task-workspace projection now keeps
that controller on its prior path.
- Clean final production-source regression: both restart cases passed in
a fresh embedded PostgreSQL cluster. These cover both receipt paths and
all binding, bootstrap and API-controller controls.
- The initial focused checks passed 11 cases. Seven existing ordinary
Retry and environment selection cases also passed. A later combined
final-base run had 17 assertions pass but failed workspace teardown at
90 seconds and task-Retry setup at 30 seconds. That attempt is retained
as a failure; the two new restart cases then passed alone with exit 0.
Earlier PostgreSQL support-probe failures are also retained as setup
failures.
- The worktree's own Runner, shared and SDK dependencies were built. All
seven server typecheck layers passed for the final production source.
The final additional commit changes only the existing resume-owner
fixture.
- Required CI found an invalid fixture binding in [server shard
11](https://github.com/paperclipai/paperclip/actions/runs/42322379917/job/128250151095).
The first attempt failed before lease acquisition because the fixture
named a random workspace with no row. The automatic test retry then
failed on its fixed issue label. The fixture now uses the transient
run-ID contract and a unique label. Its exact original acquisition and
owner-release assertions pass locally with exit 0.
- Whitespace and added-code-comment checks passed.
- Final commit `f0e41e8c6b949f43863ec60fc7b96b97025eafc6` passed
required
[CI](https://github.com/paperclipai/paperclip/actions/runs/42323826555):
56 successful checks, four intended skips, one neutral result, and no
pending or failed checks. Greptile and Ponytail both gave this exact
head 5/5 with no actionable findings. No review threads remain open.
Hosted deployment and original-task recovery remain separate from local
proof.

## Risks

Malformed or missing native admission records now hold rather than
selecting fresh work. Valid initial admissions and synthetic run-ID
bootstraps retain their prior path. The change does not grant
reattachment authority or settle provider effects. Existing controller,
workspace writer, lease, Stop, and trust checks still apply. No API,
schema, or configuration contract changes.

## Model Used

OpenAI GPT-6 family through Codex. The runtime does not expose the exact
serving model ID or context window. No model override was used. The
assistant used reasoning, code editing, shell tools, and local tests.

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have searched GitHub for duplicate or related PRs and linked
them above
- [x] I have either (a) linked existing issues with `Fixes: #` / `Closes
#` / `Refs #` OR (b) described the issue in-PR following the relevant
issue template
- [x] I have not referenced internal/instance-local Paperclip issues or
links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip`
URLs)
- [x] My branch name describes the change (e.g. `docs/...`, `fix/...`)
and contains no internal Paperclip ticket id or instance-derived details
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [x] All Paperclip CI gates are green
- [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups
- [x] I will address all Greptile and reviewer comments before
requesting merge

---------

Co-authored-by: Paperclip <noreply@paperclip.ing>
2026-11-06 19:37:48 -06:00
DottaandPaperclip b94963f91e fix: retry temporary repository catalog failures before dispatch (#19690)
## Thinking Path

> - Paperclip manages AI agents and their work.
> - A task must check repository access before it starts agent work.
> - Repository discovery can fail while the user's existing grant
remains valid.
> - Discovery previously replaced a known temporary provider refusal
with an empty catalog.
> - The task then reported lost access and did not schedule recovery.
> - This change keeps temporary discovery failures distinct and uses the
existing bounded retry owner.
> - Each retry must pass a fresh access check before it can use the
saved repository.

## Linked Issues or Issue Description

**What happened?**

A task with a saved catalog repository stops with an access denial when
GitHub returns an exhausted-quota response or HTTP 503. The task does
not start provider work, but the discovery layer discards the temporary
failure and returns an empty catalog.

**Expected behavior**

Known temporary failures before provider dispatch use the existing
bounded infrastructure retry. The successor checks the same responsible
user's current grants and reads the saved files only after fresh
discovery succeeds. A completed denial remains terminal.

**Steps to reproduce**

1. Bind a task to an authorized catalog repository with saved local
changes.
2. Make its authorized GitHub discovery return HTTP 403 with zero
remaining quota, or HTTP 503.
3. Let discovery recover before the existing retry deadline.
4. Observe one successful successor using the original repository bytes.

**Paperclip version or commit**

Reproduced on master at `b8d94b3ad1`. A search found no existing PR for
this temporary catalog failure.

## What Changed

- Keep a safe typed failure for known HTTP availability and quota
responses. Honor the later provider deadline and bound it to one day.
- Propagate that failure only when fresh discovery cannot find a
required repository. Preserve successful partial catalogs and the
existing connection setup error contract.
- Classify the failure only before provider dispatch. Reuse existing
bounded retry, interaction ownership, and bootstrap settlement rules.
- Keep current grant checks, saved repository selection, normal Stop,
and provider-started failure policy.
- Keep provider deadlines when accepted interactions use their own retry
owner. Recognize secondary HTTP 403 rate limits with valid retry advice
while keeping ordinary permission denials terminal. This matches [GitHub
rate-limit
guidance](https://docs.github.com/en/rest/using-the-rest-api/rate-limits-for-the-rest-api).
- Keep direct repository request responses outside the automatic
bootstrap retry contract. Test successful partial discovery and
missing-required-repository recovery with two independent eligible
connections.
- Document task repository discovery recovery.

## Verification

- Behavioral RED: real heartbeat and PostgreSQL fixtures reached actual
HTTP 403 and503 discovery responses, started no adapter, and found zero
successors instead of one. Both cases failed before the production
change.
- Behavioral GREEN: both cases waited for the real retry deadline, used
the normal queue worker, ran the controlled adapter once after fresh
discovery, and read the original saved bytes. Two cases passed in 74.73
seconds. No external model or provider request was made.
- Deadline RED/GREEN: a combined Retry-After and quota-reset response
initially selected the earlier deadline. The regression now selects the
later deadline.
- Initial repair at `d8d4714a18` (same production source as
`018e8c52d345d79972d7907468080dc9908c299f`): seven affected files
passed, 69 cases in 185.16 seconds. That test-only cleanup then passed
all five real-database acceptance cases in 134.76 seconds.
- Commands: `pnpm exec vitest run` with
`heartbeat-repository-catalog-recovery.test.ts`,
`github-catalog-timing.test.ts`, `github-grant-metadata.test.ts`,
`project-repositories-persistence.test.ts`,
`task-workspace-repositories-persistence.test.ts`,
`github-repository-catalog-failure.test.ts`, and
`services/heartbeat/retries.test.ts` from the server source tree. The
acceptance file also ran fresh at `018e8c52d3`. A fresh five-case run
after the P1 repairs passed at `f490ca6b78` in 122.06 seconds. The final
eight-case file passed fresh at
`e5b2efab11919467850f55fd6345317132b9b672` in 124.62 seconds, using real
owned embedded PostgreSQL. It covers automatic recovery with saved
bytes, genuine denial, provider-started classification, normal Stop, the
direct HTTP route, and both partial-catalog outcomes.
- Review repairs at `f490ca6b787cf77df96d3d6edfb2ab9115eb19a6`: both
reported P1s reproduced RED. The real database interaction scheduler
chose a retry after 24 seconds before the provider deadline of one hour.
A secondary HTTP 403 with valid Retry-After lost its retry
classification. The narrow fixes then passed 44 cases across scheduler,
header, and metadata-contract files in 37.66 seconds.
- A real direct request through the task workspace router and normal
error middleware reproduced a 500 response instead of the existing 403.
Required-ID retry mode now applies only to admission and its rechecks.
The route and both two-connection partial-catalog cases then passed in
29.09 seconds. Both partial cases use actual owned grants and credential
bindings.
- All seven server type layers passed again at final head
`e5b2efab11919467850f55fd6345317132b9b672`. The affected test type layer
passed again after the test-only cleanup. Environment: macOS arm64, Node
26.4.0, pinned pnpm 9.15.4, Vitest 5.0.3, owned disposable PostgreSQL 18
on loopback. The current checkout's shared packages, plugin SDK, and
Runner were built first.
- One local acceptance run under concurrent owned test/typecheck load
hit the unchanged 15-second Stop-case timeout. Its four other cases
passed. The unchanged complete file then passed serially. The timeout
receipt remains recorded; no assertion or timeout was weakened.
- A provider-started failure retains the existing generic adapter retry
policy. It does not receive the catalog no-provider certificate or a
provider retry deadline. Fixture cleanup cancels its scheduled retry
through the normal owner.
- Final head `e5b2efab11919467850f55fd6345317132b9b672` has 59
successful checks, 3 allowed skips, no pending or failed check, and
Greptile 5/5 with no open findings. [Completed CI
workflow](https://github.com/paperclipai/paperclip/actions/runs/42322202977).
- Additional local diagnostic for the late recovery-owner advisory: on
unchanged `e5b2efab`, the dedicated scheduler returned `retry_exhausted`
with attempt 3/max 2. The normal stranded sweeper then escalated once,
created no extra run, and started no adapter, even after catalog access
recovered. One case passed in 17.32 seconds. The existing
failed-predecessor path delegates to that bounded scheduler and returns;
it does not enter a new generic retry budget. No production registry
change was made. This diagnostic was not a CI case. Its local harness is
preserved separately at `74e3854eea3f7c4121fdcd9c8a8ad522cd8c7477` on
`codex/catalog-exhaustion-acceptance`; its production source is
identical to `e5b2efab`.
- Module boundary and whitespace checks passed.

## Risks

- A temporary failure from another eligible connection can delay a truly
missing repository for the existing limit of two attempts. It cannot
grant access.
- Unknown network errors and genuine access denials retain their
existing behavior. This change handles known HTTP failures only.
- Historical provider quota causality is unproven. This repair has a
separate local producer regression. It does not rewrite past failures or
queued user intents.
- Acceptance uses real local database and heartbeat owners with
controlled HTTP and adapter fixtures. It does not claim a live
native-provider recovery.

## Model Used

OpenAI GPT-6.1 Codex (`gpt-6.1-sol`), with high reasoning, repository
tools, code execution, and controlled local PostgreSQL tests. The host
did not expose a context-window size.

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have searched GitHub for duplicate or related PRs and linked
them above
- [x] I have either (a) linked existing issues with `Fixes: #` / `Closes
#` / `Refs #` OR (b) described the issue in-PR following the relevant
issue template
- [x] I have not referenced internal/instance-local Paperclip issues or
links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip`
URLs)
- [x] My branch name describes the change (e.g. `docs/...`, `fix/...`)
and contains no internal Paperclip ticket id or instance-derived details
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [x] All Paperclip CI gates are green
- [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups
- [x] I will address all Greptile and reviewer comments before
requesting merge

---------

Co-authored-by: Paperclip <noreply@paperclip.ing>
2026-11-06 19:29:40 -06:00
DottaandClaude Opus 5.5 06bbcea12f fix(budgets): price lost receipts and stop restart-derived accounting from hard-stopping companies (#19673)
## Thinking Path

> - Paperclip is the open source app people use to manage AI agents for
work
> - Budget admission and run accounting decide whether any task in a
company may start
> - #19497 made pending accounting an admission hold and settles a
stopped run's lost receipt as an unpriced charge
> - Restart-chaos waves still stopped whole companies. A lost Codex
receipt with complete token counts settled as unpriced because the rate
card only prices complete receipts. Under the default blocking policy
that hard-stopped the company at 0.38 of 3000 cents. In another storm, a
resumed run's continuation was refused by its own task's
recovering-accounting hold. Separately, unpriced charges with zero
tokens or a known partial cost hard-stopped a company at 120 of 2000
cents
> - This pull request prices a lost receipt's observed usage from the
rate card, lets a task's continuation pass its own recovering
accounting, and stops restart-derived or evidence-free unpriced charges
from tripping the blocking policy
> - The benefit is that a restart no longer pauses a company by itself,
while genuinely unpriced usage still blocks

## Linked Issues or Issue Description

Follow-up to #19497. Refs #19606.

**What happened?**
- Wave A (K6 crash loop): native Codex run `5037b8d1` was killed
mid-turn. Its receipt was lost, but `usage_json` held gpt-6.1-sol with
28690 input and 220 output tokens. The charge was written
`cost_status=unpriced`, `pricing_provenance.source=unknown`, because
`priceCodexReceipt` returns early when `!receipt.complete`. 0.2 s later
the default `unpricedUsagePolicy=block` opened a hard incident at 0.38
of 3000 cents. The company was paused, and 6/6 tasks were blocked with
`canRetry=false`.
- Wave B (K1 storm): Claude run `2a7a8abf` resumed after the restart.
`reserveRunBudget` refused its interaction continuation with "New work
must wait while a native run recovers its unfinished accounting", so the
task could not settle its own recovery. A 0-token unpriced charge and an
unpriced charge with a known 0.81-cent cost then hard-stopped the
company at 120 of 2000 cents.

**What did you expect?**
A restart-lost receipt with known numbers is priced as an estimate, and
no restart-derived accounting state pauses a company by itself. A task's
own continuation is never held by its own accounting. Real usage above
the limit, and genuinely unpriced usage, still stop work.

**Steps to reproduce**
1. Give a company a hard-stop budget with the default unpriced-usage
policy.
2. Kill a native Codex turn after it has reported tokens, so the final
receipt is lost and native recovery ends in terminal failure with a
verified stop.
3. Observe an unpriced charge for known tokens, a hard incident, and a
paused company.

## What Changed

- `run-cost-accounting.ts`: when a lost receipt settles and its usage
has known tokens and no known cost, price it with
`priceCodexReceipt`/`priceAnthropicReceipt` as a complete per-run
checkpoint. The charge is `estimated`, its provenance keeps the
rate-card source, and its evidence says "final receipt lost; observed
usage is a lower bound". The estimate is also written to the run's usage
so a later receipt reconciles against it. Zero observed tokens, and
per-model usage, stay unpriced (unknown is never shown as zero, and
aggregate totals never take one model's rate).
- `budget-exposure.ts`:
- The pending/recovering accounting hold excludes the run being admitted
and earlier runs of the same task (same `native_issue_id`). A task's
continuation and finalization can therefore settle its own accounting.
Other tasks stay held, and those runs still count as spend.
- The blocking unpriced-usage policy no longer counts these unpriced
charges: the settled final charge of a lost receipt (restart-derived,
any usage; later growth still counts), a charge with a known partial
cost, and metered API or subscription billing with no observed tokens.
Unknown billing with no tokens (for example Cursor Cloud) and
complete-receipt usage that has no price still block.
- `budgets.ts` / `budget-reservations.ts`: admission accepts the
admitted `runId` and passes it to the exposure read. `reserveRunBudget`,
the final dispatch recheck and the read-only admitted recheck all supply
it, so a continuation that reserves can also dispatch.
- Daytona wave s12 (run f1d98917, a blocked remote recovery with a
0-cent held reservation and every lease destroyed) is closed by #19606.
A Retry for that same task passes the hold through the same-task
exclusion here.

## Verification

- `closed-native-receipt-accounting.test.ts` (embedded Postgres):
- Lost Codex (gpt-6.1-sol) and Claude (claude-sonnet-5) receipts with
observed tokens settle as `estimated` rate-card charges with the
lower-bound evidence. The company stays active and admission is clear
under the blocking policy.
- A lost receipt for a model with no rate card stays unpriced but opens
no incident and no pause.
- A task's continuation reserves budget past its own recovering
accounting, while another task's run is still held.
- Unpriced charges with no tokens on metered billing, or with a known
partial cost, do not hard-stop.
  - Complete-receipt usage with no price still blocks.
  - The six new cases fail on master and pass with this change.
- Existing budget and accounting suites pass locally:
budget-enforcement-scoping, budgets-service, heartbeat-cost-accounting,
run-cost-accounting, native-stop-accounting, cost-data-quality,
budget-live-attempts, budget-live-usage. Server typecheck passes.

## Risks

- A lost receipt's estimate is a lower bound. The provenance says so,
and a later complete receipt still reconciles.
- Restart-derived unpriced charges no longer trip the blocking policy.
Usage lost with a killed provider is not counted against that policy,
which is consistent with budget enforcement being best effort.
Unknown-billing and complete-receipt unpriced usage still block.
- The same-task exemption relies on `native_issue_id`. Legacy runs
without it keep the old behavior.

## Model Used

- Claude Opus 5.5 (`claude-opus-5-5`), Anthropic, via Claude Code with
tool use (shell, file editing, embedded Postgres tests).

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have searched GitHub for duplicate or related PRs and linked
them above
- [x] I have either (a) linked existing issues with `Fixes: #` / `Closes
#` / `Refs #` OR (b) described the issue in-PR following the relevant
issue template
- [x] I have not referenced internal/instance-local Paperclip issues or
links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip`
URLs)
- [x] My branch name describes the change (e.g. `docs/...`, `fix/...`)
and contains no internal Paperclip ticket id or instance-derived details
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [ ] All Paperclip CI gates are green
- [ ] Greptile is 5/5 with no open P2s, recommendations, or follow-ups
- [x] I will address all Greptile and reviewer comments before
requesting merge

🤖 Generated with [Claude Code](https://claude.com/claude-code)

---------

Co-authored-by: Claude Opus 5.5 <noreply@anthropic.com>
2026-11-06 18:55:26 -06:00
DottaandClaude Opus 5.5 29e05f7e06 fix(heartbeat): sweep orphaned run scratch directories (#19671)
## Thinking Path

> - Paperclip is the open source app people use to manage AI agents for
work
> - Each heartbeat run gets a scratch directory in the system temp
folder
> - Each process attempt makes a new directory with a marker file
> - Cleanup removes only the directory of the current attempt
> - A restart kills the old attempt, so its directory stays forever
> - One restart storm left 83 directories across 78 runs
> - This pull request sweeps those directories when the run ends and at
startup recovery
> - The benefit is that temp space no longer fills with leftover
directories

## Linked Issues or Issue Description

**What happened?**

Run scratch directories made before a restart are never removed. A
restart storm left 83 `paperclip-run-*` directories across 78 runs. Each
holds only `.paperclip-run-scratch.json`.

**Steps to reproduce**

1. Start a run that makes a scratch directory.
2. Kill the server process and start it again.
3. Let the run finish.
4. List `$TMPDIR/paperclip-run-*`. The old directory is still there.

**Expected behavior**

The old directory is removed after the run ends, or at startup.

## What Changed

- Add `sweepOrphanedRunScratch` in `server/src/services/run-scratch.ts`.
- The sweep removes a directory only if it has a valid regular-file
marker and its run is terminal in this instance database. It keeps a
directory whose run it cannot see, because another instance can share
the temp root.
- The sweep keeps active runs, unmarked directories, symlinks, and
directories outside `paperclip-run-*`.
- The sweep checks each directory again before removal and bounds the
scan (500, with a rotating start so kept entries do not starve later
ones) and removals (100). A per-run sweep filters by directory name
first. Marker run ids that are not UUIDs never reach the database query.
- Call the sweep after the current attempt's cleanup in `heartbeat.ts`,
for that run only.
- Call the sweep in `reapOrphanedRuns` (startup recovery) with run
status from the database.

## Verification

- `pnpm --filter @paperclipai/server exec vitest run
src/services/run-scratch.test.ts`
- New tests cover: leftover directories of a terminal run are removed,
an active run is kept, an unmarked directory is kept, a symlink is not
followed, and removals are bounded.

## Risks

- Low risk. The sweep acts only on marked directories of terminal runs.
- A directory left by a previous attempt could hold a live grandchild
process. The sweep does not check old process groups. The run is already
terminal.

## Model Used

- Claude, claude-opus-4-5 class model via Claude Code, with tool use and
code execution.

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have searched GitHub for duplicate or related PRs and linked
them above
- [x] I have either (a) linked existing issues with `Fixes: #` / `Closes
#` / `Refs #` OR (b) described the issue in-PR following the relevant
issue template
- [x] I have not referenced internal/instance-local Paperclip issues or
links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip`
URLs)
- [x] My branch name describes the change (e.g. `docs/...`, `fix/...`)
and contains no internal Paperclip ticket id or instance-derived details
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [ ] All Paperclip CI gates are green
- [ ] Greptile is 5/5 with no open P2s, recommendations, or follow-ups
- [x] I will address all Greptile and reviewer comments before
requesting merge

🤖 Generated with [Claude Code](https://claude.com/claude-code)

---------

Co-authored-by: Claude Opus 5.5 <noreply@anthropic.com>
2026-11-06 18:51:31 -06:00
Nicky LeachandClaude Opus 5.5 0b73c805e8 feat(environments): fill an unset instance default with a managed plugin environment (#19551)
## Thinking Path

> - Paperclip is the open source app people use to manage AI agents for
work
> - A managed instance gets its instance-level environments from the
`PAPERCLIP_MANAGED_CONFIG` document, which can declare plugin
environments next to the managed sandbox
> - A platform that runs managed instances wants a new instance to start
with one of those plugin environments as its default, without changing
the default of any instance that already has one
> - #19632 made boot fill the instance default only when it is unset,
local or deleted, in one locked transaction, and removed the revert, so
every existing managed instance keeps a set default
> - This pull request adds an `instanceDefault` flag to a plugin entry.
That entry fills an unset default through the same locked fill, before
the managed sandbox does
> - The fill follows the same readiness rule as an admin's default
write, so it never moves ready agents onto a plugin that has not
prepared them
> - The platform also needs a way to know whether a release understands
plugin entries, so the release now ships a small capabilities file
> - The benefit: new instances get the plugin environment as their
default, and existing instances and admin choices are never changed

## Linked Issues or Issue Description

Refs #19632 (the locked fill-if-unset rule this builds on), #19508
(plugin entries in the managed config)

**Subsystem affected**
Server environments: the managed config parser and the managed
environment bootstrap.

**Problem or motivation**
The managed config can declare plugin environments, but it can't make
one the instance default on a new instance. An external platform also
has no way to tell whether a given release supports plugin entries
before it sends one.

**Proposed solution**
- Add `instanceDefault: true` to at most one plugin entry. Right after
that entry's boot ensure succeeds, it fills the instance default through
`fillUnsetInstanceDefault`. The managed sandbox fill runs after it.
- On a new instance the plugin environment wins. On an existing instance
the default is already set, so neither fill changes it.
- The fill declines while an active agent that follows the default
hasn't been prepared by that plugin. This is the rule the
instance-settings route enforces. When the plugin fill declines, the
managed sandbox fills as usual.
- Ship `server/src/services/managed-config-capabilities.json`, which
lists `pluginEnvironments`.

**Alternatives considered**
- A recorded one-time decision with a retry worker. It needed pending
states and extra checks for many writer and trigger combinations.
Filling only an unset default, under the existing lock, needs none of
that.
- Rejecting the fill whenever agents exist. That is stricter than the
admin route and blocks harmless cases, such as agents that are paused or
already prepared.

**Roadmap alignment**
This extends existing managed-environment behaviour. It adds no UI.

## What Changed

- `server/src/services/managed-config.ts`:
- `ManagedPluginEnvironmentSpec.instanceDefault` (boolean, default
`false`).
- The parser refuses `instanceDefault` on more than one plugin entry, on
the sandbox entry (even `false`), or as a non-boolean.
- `MANAGED_CONFIG_CAPABILITIES` and
`MANAGED_CONFIG_CAPABILITIES_SCHEMA_VERSION` constants. A plugin entry
is refused unless `pluginEnvironments` is listed.
- `server/src/services/managed-config-capabilities.json`: `{
"schemaVersion": 1, "capabilities": ["pluginEnvironments"] }`. A test
pins it to the constants and to this literal contract.
- `server/src/services/managed-environments.ts`:
- New `fillPluginInstanceDefault`. It runs right after a successful boot
ensure of the flagged entry and logs a fill or a decline. Recovery after
boot never fills.
  - The managed sandbox fill now runs once, after the plugin entries.
- `server/src/services/managed-instance-default.ts`:
`fillUnsetInstanceDefault` runs `agentsNeedSetupForEnvironmentChange`
inside its locked transaction and returns `declined:
"agents_need_setup"`. A sandbox target never needs agent setup, so the
managed sandbox fill behaves as before.
- `server/src/services/plugin-environment-driver.ts`: the readiness
query is factored into `agentsNeedSetupForEnvironmentChange`.
`assertAgentsReadyForEnvironmentChange` wraps it and still throws the
same conflict.
- `doc/DEVELOPING.md`: documents `instanceDefault`, the fill order, the
readiness decline, and the capabilities file.

## Verification

- `cd server && npx vitest run
src/__tests__/managed-plugin-environments.test.ts` (embedded Postgres),
under `instanceDefault (fill only an unset default)`:
  - A new instance gets the plugin row as its default.
  - An existing sandbox default is kept, and so is an admin's choice.
- If the plugin was down at the first boot and the sandbox filled, a
later recovery and boot keep the sandbox default.
- An admin-cleared or local default is declined while a ready or
verifying agent follows the default without the plugin's setup. The
managed sandbox then fills it.
- It fills when the agents that follow the default are paused or already
prepared, or are pinned to another environment.
  - Without the flag, nothing happens.
- A new agent that follows the default gets the plugin in
`requiredPluginIds`.
- `npx vitest run src/__tests__/managed-instance-default.test.ts`
(embedded Postgres): the earlier fill, lock and overlap cases pass. A
sandbox fill also succeeds while active agents follow the default.
- `npx vitest run
src/services/managed-environments-plugin-entries.test.ts`:
  - The fill order is plugin then sandbox.
  - When the plugin is down there is no fill, and recovery never fills.
- A failed ensure gives only the sandbox fill, and a failed fill keeps
the ensure counted.
  - When the plugin fill declines, the sandbox still fills.
- `npx vitest run src/__tests__/managed-config.test.ts
src/services/managed-config-capabilities.test.ts`: parser refusals and
the capabilities contract.
- `npx vitest run src/services/managed-environments.test.ts
src/__tests__/instance-settings-routes.test.ts
src/__tests__/environment-routes.test.ts`: pass. The route still throws
the same readiness conflict.
- `pnpm --filter @paperclipai/server typecheck` passes.
- I did not run the full `pnpm test:run`, `pnpm -r typecheck` or `pnpm
build`. CI covers them.

## Risks

- An instance whose default is unset at the first boot after this
release gets the plugin environment, if its agents are ready for it.
That covers a new instance, and an instance whose admin cleared the
default or chose the local environment. This is the intended behaviour.
- The readiness check doesn't lock agent rows. If an agent becomes ready
during the boot fill, it can miss the check, which is the same race the
admin route has. Agents created after the fill are prepared for the
plugin, because setup reads the current default.
- If the plugin is down at a new instance's first boot, the instance
keeps the managed sandbox default from then on.
- No schema change.

> For core feature work, check [`ROADMAP.md`](ROADMAP.md) first and
discuss it in `#dev` before opening the PR. Feature PRs that overlap
with planned core work may need to be redirected — check the roadmap
first. See `CONTRIBUTING.md`.

## Model Used

- Claude Opus 5.5 (`claude-opus-5-5`), Anthropic, through Claude Code
with tool use (file edits, shell, test runs).

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have searched GitHub for duplicate or related PRs and linked
them above
- [x] I have either (a) linked existing issues with `Fixes: #` / `Closes
#` / `Refs #` OR (b) described the issue in-PR following the relevant
issue template
- [x] I have not referenced internal/instance-local Paperclip issues or
links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip`
URLs)
- [x] My branch name describes the change (e.g. `docs/...`, `fix/...`)
and contains no internal Paperclip ticket id or instance-derived details
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [x] All Paperclip CI gates are green
- [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups
- [x] I will address all Greptile and reviewer comments before
requesting merge

🤖 Generated with [Claude Code](https://claude.com/claude-code)

---------

Co-authored-by: Claude Opus 5.5 <noreply@anthropic.com>
2026-11-06 16:48:13 -08:00
DottaandPaperclip 7ac99718a4 fix(workspaces): fence legacy sources for online migration (#19642)
## Thinking Path

> - Paperclip coordinates AI agents and preserves their saved work.
> - Remote workspace storage replaces legacy host directories with
durable snapshots.
> - Several legacy workspace records can name one physical project
directory.
> - A task lock alone cannot exclude a new task that selects that
directory.
> - Terminal recovery records can retain valid sources after physical
writers settle.
> - This change fences the source through its real preparation and
lifecycle owners.
> - Idle ordinary sources can then migrate while unrelated remote work
continues.

## Linked Issues or Issue Description

**What happened?**

Online migration rejects ordinary legacy directories when several
workspace records name the same path. A source inspection found 45
aliases across three project roots with no root Git marker or previously
imported nested child. The instance also had unrelated running remote
work. Requiring the whole instance to drain prevented useful migration
of these idle sources.

Terminal native sources and superseded finalization attempts also remain
blocked after their exact physical and durable owners settle. Their
files, provider allocations and recovery records must remain available
through the change of file authority.

**Expected behavior**

Migrate an idle ordinary source under a derived physical source fence.
Let unrelated object-backed turns continue. Preserve provider and
recovery obligations. Keep unknown writers, shared Git stores and
uncertain source state blocked.

**Steps to reproduce**

1. Create several local workspace records for one managed project
directory.
2. Give the aliases different source tasks. Leave their local writers
idle.
3. Keep a valid remote workspace turn running on another source.
4. Inspect or apply migration to an alias. The old owner returns
`overlapping_workspace_requires_maintenance`.
5. Retain a terminal native prepared source with a null coordinator
owner, or an old finalize attempt with an exact later committed receipt.
The old online path keeps these sources blocked.

**Paperclip version or commit**

Current tested head: `7478c817f09f7eed396922c0f7831af07ae6ff14`, based
on master `8621bcf53ee2e4bbefb7d193add42dd544ca06e8`. Related recovery
work: #19131.

**Deployment mode**

Hosted native Runner with remote workspace storage. Qualification uses
disposable local PostgreSQL databases, actual archive/storage owners and
synthetic source trees. The source observations were read-only.

## What Changed

- Retain the existing company/task source keys and add one physical
managed-project key. Heartbeat source selection, materialization, reopen
and lifecycle owners share it. Configured aliases of canonical task
directories retain their original task key.
- Fence runtime provision and each configured service CWD through both
startup owners. Check all unsettled service CWDs for physical source
overlap, even when workspace IDs differ. Runs with no services keep
their filesystem-free path.
- Derive a bounded ordinary alias closure. Lock every alias task and
lifecycle key. Reject foreign companies, changed membership, unproven
descendants, included Git metadata and other unresolved writer
obligations.
- Commit remote authority on the connection that holds source exclusion.
Refresh a stale selected local workspace after admission if migration
published remote authority. Publish activity after commit.
- Admit exact terminal native recovery sources under the existing
physical finalizer keys. Bind descriptors, allocations and owner
checkpoints to journaled fingerprints. Recheck them before capture and
publication.
- Add a separate company-scoped online entry for exact superseded
finalization receipts. Keep the offline entry's deployment prerequisites
and keep inventory read-only.
- Document the proof and the remaining Git/common-store extension. The
original files stay in place. No new scheduler, deployment action or
database migration is added.

## Verification

- Review found that the real reopen path could hold lifecycle exclusion
while waiting for a project source. The new actual nested-reopen
regression failed before the repair: lifecycle lock count was 1 while
another connection held the project fence. The repair acquires declared
and physical project sources before reconstruction and lifecycle. The
contention case, ordinary-fetch restore and runtime nested restore
passed. The lifecycle-worker restore first completed in 16.64 seconds
but exceeded its unchanged 15-second body limit; a bounded warm rerun
passed at that same limit. Both wrappers exited and completed cleanup.
The source type graph, module-boundary check and diff check pass. Final
7478 CI passed: 58 successful jobs, three skipped, one neutral and a
successful Snyk context. Fresh Greptile is 5/5 for exact7478, with no
unresolved threads. [Final
CI](https://github.com/paperclipai/paperclip/actions/runs/42318150314/job/128240631573).

- Full CI on `e4283b3452` passed the other server, build and type
checks. One exposure owner case failed: two execution workspaces
received one preview pair after source admission serialized their
starts. The first local seven-case run reproduced that failure; adding
the owner argument alone did not change the hash payload. The completed
repair binds run-scoped reuse to its execution-workspace owner. All
seven existing real-process/fake-broker cases then passed in 13.81
seconds, with wrapper exit 0 and cleanup complete. Public scope IDs and
explicit project/agent sharing are unchanged. The final7478 head passed
all required CI and fresh review gates.

- The service/source/restore owner canary passed 25 cases across four
suites before the final no-service fast-path guard (41.33 seconds). This
includes actual project service processes with a different project ID
and no execution-workspace ID. Their startup waits for source ownership,
migration stays blocked while they run, and the source becomes eligible
after their verified stop. The final three-case runtime canary passed at
the final source inputs (18.70 seconds). It covers that fast path and
both service-CWD variants. Both wrappers exited 0 and completed cleanup.
- The boundary-repair canary passed 9 cases across four suites at
`7c18f1c170`. It covers the real rehome/conversion gateway, project
command provisioning, future task selection, stale imported authority,
foreign-company binding, and existing standalone filesystem callers. The
shared PostgreSQL wrapper exited 0 and completed cleanup. Duration:
94.15 seconds.
- The P1 diagnostic passed 46 cases across five suites at the pre-rebase
P1 revision. It covers the actual importer with an export warning
created by `recordNativeFinalizationFailure`, strict
prepared-source/action bindings, finalizer locks, source/lifecycle
races, unrelated remote execution, and bare Git with external
alternates. It uses the repository shared PostgreSQL wrapper,
`--fsModuleCache`, and a local-only 90-second hook allowance. Duration:
245.44 seconds. No product timeout changed.
- The canonical retained-directory compatibility check passed 22 cases
across two suites. Missing archived task directories still import from
authenticated restore points; they do not need a present-directory
source proof.
- Both initial P1 regressions were observed before the fix. The real
finalizer warning made the importer ineligible. The old archive owner
accepted a nested bare repository borrowing external objects. The new
cases pass and preserve the original warning, prepared descriptor,
allocations and files.
- Prior attempts remain non-passes: the first 23-case canary passed on
an earlier head; its exact-head rerun hit 30-second database
setup/cleanup limits. A read of the owned PostgreSQL server found a
template clone waiting on `DataFileExtend` for 58 seconds. A broader
owner run was intentionally interrupted during slow existing heartbeat
setup. One diagnostic invocation used an invalid CLI option and executed
no tests. A later review canary passed 21 cases and failed the new real
restore contention case: cwd-only admission missed the declared project
of an external worktree. Its fixture also omitted the required
file-repository authorization callback and produced an unhandled
rejection after the failed assertion. The repaired run passed 22 cases,
exited 0 and completed cleanup. These earlier failures are not reported
as passes.
- The recovery owner passed 37 PostgreSQL cases, including 14 new and 23
existing finalized-recovery cases. The operation reconciliation owner
passed 40 cases. The initial archive run passed 103 cases and found a
missing closed diagnostic entry; the corrected diagnostic and expanded
Git rejection cases pass in the P1 run.
- The full server type graph passes with the Runner source exports
mapped locally because this checkout has no built Runner declarations.
The latest module-boundary check and `git diff --check` pass. Standard
package build/typecheck and broad final-head regression coverage remain
required in CI.
- The initial CI exposed missing admission scopes for standalone
filesystem APIs and a changed foreign-company error. The latest repair
keeps those APIs independent of a database and holds physical fences at
their actual database-backed mutation owners. The branch also includes
the existing master fix for unchanged Runner default-model assertions.
New review findings and new-head CI are being checked.
- The local canary command and bounded source selection are documented
in `doc/plans/2026-11-06-online-ordinary-source-fence.md`. Source
observations only read data. A fresh bounded metadata probe found 254
pending legacy records and zero unsettled local-process services. No
live import, hold, cancellation, provider action or source filesystem
write was performed for this change.

## Risks

- Run-scoped reuse now includes execution-workspace ownership in its
private key. Explicit project/agent sharing keeps its previous identity.
- A missing writer owner could make a source proof unsafe. Admission
derives physical aliases, includes future project selection and retains
all existing source/lifecycle/finalizer locks. Unknown and changed state
fail closed.
- Cross-company physical alias checks use bounded minimal-path pages.
Lexical-prefix filtering cannot safely replace them because a symlink
can hide a foreign alias. Unknown paths or more than 10,240 foreign
records leave the source explicitly unproven. More than 1,000
same-company local records also fail closed.
- The project key can serialize local preparation within one project. A
first project waits; additional project acquisition fails on contention
to avoid a lock cycle. Remote authority keeps its remote preparation
path.
- Recovery preservation does not prove provider termination or
successful file recovery. Existing provider allocations, checkpoints,
task intent and recovery actions remain authoritative.
- This slice does not finish shared Git migration. Git
administrative/common-object/alternates closure and exact nested
imported-child coverage remain the next owned extension. No global
writers-stopped shortcut is used online.

## Model Used

OpenAI GPT-6 through Codex, with reasoning, tool use and code execution.
The host does not expose a more specific backend model ID or
context-window size.

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have searched GitHub for duplicate or related PRs and linked
them above
- [x] I have either (a) linked existing issues with `Fixes: #` / `Closes
#` / `Refs #` OR (b) described the issue in-PR following the relevant
issue template
- [x] I have not referenced internal/instance-local Paperclip issues or
links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip`
URLs)
- [x] My branch name describes the change (e.g. `docs/...`, `fix/...`)
and contains no internal Paperclip ticket id or instance-derived details
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [x] All Paperclip CI gates are green
- [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups
- [x] I will address all Greptile and reviewer comments before
requesting merge

---------

Co-authored-by: Paperclip <noreply@paperclip.ing>
2026-11-06 18:42:45 -06:00
Devin FoleyandPaperclip 2a4a001d37 Preserve GitHub access repair guidance for MCP callers (#19655)
Return GitHub permission denials as failed MCP tool results with trusted,
connection-specific recovery guidance. Explain the personal-account and
organization App installation boundary without replaying writes or bypassing
provider-content checks. Align the repair steps with the Permissions UI.

Cover enabled model checks and malicious provider failures across direct
calls, connection tests and stored approvals. Repair the CI-exposed synthetic
onboarding environment fixture without weakening cancellation assertions.

Verified 311 targeted tests, six onboarding Playwright tests, server
typecheck, module boundaries, full CI and Apex 5/5 with all threads resolved.

Co-Authored-By: Paperclip <noreply@paperclip.ing>
2026-11-06 16:32:27 -08:00
DottaandPaperclip a3eecf1fc9 Preserve admitted runtime skill bundles during server replacement (#19675)
## Thinking Path

> - Paperclip is the open source app people use to manage AI agents for
work.
> - Native runs keep the exact skill files admitted for execution and
recovery.
> - Older inputs can name immutable local bundles without a skill
version ID.
> - Installed skill heads alone do not preserve those admitted bundles.
> - Server replacement needs a durable source for each retained bundle.
> - This pull request copies authenticated bundles through the existing
package owner and restores their exact projections.
> - The benefit is preservation during online migration without stopping
active work or settling recovery warnings.

## Linked Issues or Issue Description

Refs #19656. Related: #19660.

**What happened?**

Older native execution inputs can contain skill bundles with a null
version ID. Recovery skips those bundles. Startup installation checks
can pass even when those retained inputs still require the old
filesystem.

**Expected behavior**

Preserve each retained admitted bundle in object storage. Restore its
original bytes, modes and digests on an empty replacement host. Keep its
null pin and all run, controller and recovery state. Block startup and
enrollment while a concrete local asset obligation remains.

**Steps to reproduce**

Retain a native run with an admitted local skill bundle and a null
version ID. Convert its installed skill head to durable storage. Replace
the server home and attempt recovery. The old bundle path remains in the
recovered context.

## What Changed

- Add a bounded `runtime-assets` phase to the existing skill package
maintenance CLI. It copies exact admitted files under the runtime asset
publication lock, verifies the durable package, and appends a run-bound
receipt after source revalidation.
- Keep original files, null pins, task intent, warnings and controller
leases. Support an active run through copy-only preservation. Do not
start a turn or claim provider ownership.
- Verify and reuse a healthy canonical local bundle before storage
reads. Restore missing or damaged bundles through the existing package
and native asset materializers. Use the authenticated original manifest
to preserve exact read and execute modes. Accept a later contract
revision only when the run binding and exact skill selection remain
unchanged.
- Check retained recovery obligations and current task sessions during
both startup and migration eligibility. Ignore ordinary admission that
has no completed execution input.
- Protect receipt-backed packages from orphan collection. Serialize
receipt publication and deletion on the package row, then check
references in a fresh statement after the lock.
- Add real PostgreSQL and filesystem regressions. Replace a
delete-method proxy with an actual upload-renewal row-lock race. Publish
mutation activity only after commit.

## Verification

- Baseline production startup gate failed the new concrete-asset
regression as expected. The fixed gate passed. The actual before-fix
preservation owner also failed recovery from a healthy local bundle
during a simulated storage outage. A verified local-first path fixes
that regression.
- Eight preservation tests passed with real PostgreSQL, streaming
storage, archive extraction and native materialization. They cover cold
recovery, exact modes and binary bytes, active ownership, changed
sources and bindings, contract revisions, missing or corrupt receipts,
and publication/collection races.
- Six affected package collection/deletion controls and three existing
startup controls passed. The existing versioned recovery consumer passed
a sequential retry.
- One fixture attempt failed on its cleanup foreign-key order; the
fixture was corrected. One existing suite hit its unchanged 30-second
database startup hook before test execution. The unchanged single
consumer passed on retry. These failures remain recorded.
- Source, changed-test and CLI TypeScript checks passed. Rebase
preserved both the local instruction-copy and runtime-asset guards.
Current-head changed-test checks passed. Final PostgreSQL rerun passed
all eleven preservation/startup cases. Current CLI check passed.
Required CI remains pending at the trusted-runner gate.
- Current canonical bundled creation uses package preparation plus
atomic content/head publication. Native preparation requests immutable
version snapshots before delivery. Converted installations and new
canonical bundled creation therefore do not recreate the historical
null-version asset dependency.
- Fresh Greptile review on exact head
`54c7dd048c9016c1af9fc68213d5ae053ac16499` passed at 5/5 with zero
unresolved threads.
- Module boundaries, whitespace, and credential/internal-reference scans
passed. No live source writes, provider actions or migration apply were
performed.

## Risks

Missing, changed or unsafe local files remain blockers. This command
does not repair a previously published package whose objects later
disappear or become corrupt. It also refuses malformed preservation
receipts. It retains the original local files and prior evidence and
keeps removal blocked. Automatic repair requires a separate canonical
package-owner recovery operation; direct database edits are not an
accepted recovery path. Failed publication keeps the original files and
any unreferenced package for normal collection. The readiness check is
explicit startup or enrollment work, not a background scan. Its cost
grows with retained admitted asset obligations. Older readers must be
upgraded before the old volume is removed. This change preserves asset
bytes; it does not settle business recovery or qualify unrelated volume
dependencies.

## Model Used

OpenAI GPT-6 (Codex). The runtime did not expose a more specific backend
model ID or context-window size. Used reasoning, code editing, and tool
execution.

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have searched GitHub for duplicate or related PRs and linked
them above
- [x] I have either (a) linked existing issues with `Fixes: #` / `Closes
#` / `Refs #` OR (b) described the issue in-PR following the relevant
issue template
- [x] I have not referenced internal/instance-local Paperclip issues or
links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip`
URLs)
- [x] My branch name describes the change (e.g. `docs/...`, `fix/...`)
and contains no internal Paperclip ticket id or instance-derived details
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [x] All Paperclip CI gates are green
- [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups
- [x] I will address all Greptile and reviewer comments before
requesting merge

---------

Co-authored-by: Paperclip <noreply@paperclip.ing>
2026-11-06 18:23:53 -06:00
DottaandClaude Opus 5.5 6d1ecfc420 fix(accounting): close a remote run's lost receipt once its sandboxes are terminated (#19606)
## Thinking Path

> - Paperclip is the open source app people use to manage AI agents for
work
> - Budget admission waits while completed runs await accounting; #19497
made that a hold on new work, never a hard stop
> - #19497 also closes a lost usage receipt once a local provider is
verified stopped, so the hold ends
> - A remote (Daytona) run has no local stop event and keeps its
recorded remote process identity, so its lost receipt never closed. The
company then held all new work until a receipt that can no longer arrive
> - This pull request closes a remote run's lost receipt once every
sandbox it used carries a provider termination receipt
> - The benefit is that a restart that kills a Daytona turn no longer
stops a company's new work

## Linked Issues or Issue Description

Follow-up to #19497. Refs #19544 (Daytona chaos harness).

**What happened?**
In a Daytona restart wave, run `a261c30b` failed after native recovery
was blocked. Its usage receipt stayed incomplete
(`accountingReceiptReady: false`). Both of its sandbox leases were
released with a `destroyed` termination receipt, but accounting stayed
pending. Admission then refused new company work with "New work must
wait while a native run recovers its unfinished accounting".

**What did you expect?**
Once every sandbox of the run is stopped or destroyed, no runner can
report usage for it. The known part of its usage should settle as an
unpriced charge, as it does for a verified local stop, and new work
should be admitted.

**Steps to reproduce**
1. Run a native task on a Daytona environment with a hard-stop budget.
2. Kill the control plane during the provider turn so the turn's receipt
is lost and native recovery ends in terminal failure.
3. After the sandbox lease is released with a termination receipt,
observe that the run stays `cost_accounting_pending` and new work is
held.

## What Changed

- `run-cost-accounting.ts`: the closed-receipt predicate gains a remote
branch. A native run in terminal failure without a result (failed,
cancelled, timed out or interrupted) is closed when it has at least one
environment lease and every lease carries a
`paperclip.remote-termination.v1` receipt bound to that lease, run,
company, provider and provider lease ID, with state `stopped` or
`destroyed`, after a successful release. This mirrors
`hasRemoteTerminationReceipt`. One SQL predicate still serves the
reconciler scan and settlement.
- The local branch is unchanged: a failed run with a verified local stop
event and a cleared process identity.
- A sandbox that may still run (no receipt, lease still active), a
receipt bound to another sandbox, or a run with no lease keeps its debt
pending.
- `budget-enforcement-worker.ts`: the accounting worker also wakes when
environment-cleanup or retained-session-cleanup work commits. Those are
the signals the lease writers already send when they release or stop a
sandbox.
- `doc/SPEC-implementation.md`: documents the remote closure rule.

## Verification

- `closed-native-receipt-accounting.test.ts` (embedded Postgres):
- A failed and a cancelled remote run, with one destroyed and one
stopped sandbox, settle as one unpriced charge, settle the reservation,
and clear admission. These are red on master.
- Debt stays pending for an active sandbox with no receipt, for one of
two sandboxes without a receipt, for a receipt bound to another sandbox,
and for a run with no lease.
- `budget-enforcement-worker.test.ts`: the accounting worker wakes on
environment-cleanup and retained-session-cleanup commits, and stops
waking after `stop()`. These are red on master.
- Existing suites pass locally: native-stop-accounting,
budget-enforcement-scoping, heartbeat-cost-accounting,
run-cost-accounting, cost-data-quality, budgets-service. Server
typecheck passes.
- Live Daytona restart wave: results in the comments.

## Risks

- A cancelled remote run now closes once its sandboxes are terminated.
Stop recovery could otherwise reattach a recorder, but a stopped or
destroyed sandbox has no runner to reattach to. Local cancelled runs
keep their drain.
- Workspace export can restart a stopped sandbox and removes its
termination receipt first. A receipt that arrives after settlement still
posts through late-receipt reconciliation.
- Reusable-lease chains (`resolveRemoteTerminationLease`) and
recovered-cleanup stop receipts are not mirrored, so those runs stay
pending. That is the conservative side.
- Low query cost: the predicate runs only for pending terminal runs.

## Model Used

- Claude Opus 5.5 (`claude-opus-5-5`), Anthropic, via Claude Code with
tool use (shell, file editing, embedded Postgres tests, live
restart-chaos harness).

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have searched GitHub for duplicate or related PRs and linked
them above
- [x] I have either (a) linked existing issues with `Fixes: #` / `Closes
#` / `Refs #` OR (b) described the issue in-PR following the relevant
issue template
- [x] I have not referenced internal/instance-local Paperclip issues or
links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip`
URLs)
- [x] My branch name describes the change (e.g. `docs/...`, `fix/...`)
and contains no internal Paperclip ticket id or instance-derived details
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [ ] All Paperclip CI gates are green
- [ ] Greptile is 5/5 with no open P2s, recommendations, or follow-ups
- [x] I will address all Greptile and reviewer comments before
requesting merge

🤖 Generated with [Claude Code](https://claude.com/claude-code)

---------

Co-authored-by: Claude Opus 5.5 <noreply@anthropic.com>
2026-11-06 18:17:11 -06:00
DottaandPaperclip b8d94b3ad1 test(server): verify status and object deadlines across cold sleep (#19347)
## Thinking Path

> - Paperclip manages agents and their useful work.
> - Status cards and external objects can have future refresh deadlines.
> - A stopped tenant needs a durable Cloud alarm to return for those
deadlines.
> - A local quiet report alone does not prove that handoff or later
useful work.
> - Acceptance must exercise the normal producer, authorization, claims
and alarm owner.
> - This PR adds opt-in signed cold-owner acceptance and bounded
launcher controls.

## Linked Issues or Issue Description

Refs #19001 and #19191, which have merged. This PR targets master and
adds acceptance for the existing status and object owners.

**What happened?**

The existing local coverage did not join useful status generation or
built-in GitHub refresh with signed Cloud alarm persistence, physical
child retirement and cold reactivation at the original deadline.

**Expected behavior**

Keep the feature enabled. Complete useful work through its normal owner.
Persist the exact authorized alarm before stopping the child. Wake and
process the same original deadline without losing identity, claims,
retries or useful results.

**Steps to reproduce**

Use the checked-in Node24 launcher with separate owned loopback
App/Cloud test databases, a compiled Cloud checkout and the pinned
Node22 executable. Select one status or object bootstrap, cycle or
identity case. The command validates fresh evidence and database
ownership before starting its guarded worker.

**Paperclip version or commit**

Current candidate `ea911278b22c855d6722e43afc026bfc5c031405` normally
merges fetched master `07a548073ab48f13cb93b2fdc31553a5da88a070`. All
eight owned acceptance files are byte-identical to
`c08e64fa857d39bdb79352e94d156db7a4dbebf3`; all unrelated paths exactly
match master. The guard-argument repair and source-specific historical
cycle proof are preserved.

## What Changed

- Add one named opt-in case per owner/stage/diagnostic combination. Keep
the shared business body and its original deadlines, assertions and
cleanup.
- Drive actual managed App startup, authenticated producers, persisted
claims and the signed Cloud SQL alarm before physical child stop.
- Retain the generated five-secret fixture profile across cold boots.
Store it in private directories and retain only names, hashes and modes
in evidence.
- Add optional query timestamps to the existing proxy and harness.
Existing callers keep their default behavior.
- Add launcher refusal controls and assert its complete child argument
list. Both explicit guard preloads and the exact child `NODE_OPTIONS`
must match.

## Verification

- The current preflight repair has causal proof: the old controls pass
all nine cases with an invalid worker preload flag. The new assertions
reject that same command in both success controls (two failures/seven
passes). Restoring the correct command passes all nine cases. The
original refusal, freshness, symlink and byte-preservation assertions
remain unchanged. All 33 recorded Node PIDs and three groups close;
temporary copies and private directories are removed. These controls
stop at the declared spawn stub. They verify the full command contract
and do not claim to execute Vitest.
- The prior real named status bootstrap passed in 72.942 seconds: one
selected case/six explicit skips. It exercised the actual launcher and
Vitest fork, useful normal generation, current authorization, settled
claims, original 900000ms interval and signed SQL alarm
generation/operation-lock acknowledgement before physical child stop.
Recorded processes and final SQL sessions closed; both successful
databases were normally dropped.
- Earlier normal status and GitHub-object cycles qualified their real
900-second and 300-second original deadlines, cold reactivation and
useful second results. Their complete original failure and recovery
records remain source-specific; no shortened business clock or
manufactured completion is used.
- On current integrated head `ea911278`, own frozen offline setup and
normal shared/SDK, Runner and App declaration prerequisites passed. The
status test and its imported closure pass the affected normal test-tree
compiler program with original options/references. The actual named
normal status bootstrap then passed: one selected case/six skips, 82.202
seconds in Vitest and 85.616 seconds in the launcher. It used the real
checked-in launcher, normal App/SDK/process agent and exact compiled
Cloud `389878364b42dd129835d263f91882c5774d5123`. The original 900000ms
interval and 120000ms alarm lead remain unchanged; useful v1 and signed
SQL alarm generation/operation-lock acknowledgement precede physical App
stop. All six recorded process IDs and the runtime group were absent;
independent final test-database sessions were zero, with no observer
during execution. Both fresh success databases were normally dropped.
This refreshes the changed consumer seams through handoff and stop; it
is not another cold-wake/useful-v2/full-cycle result. Historical cycles
remain tied to their measured source.
- Fresh exact-head CI and complete edited bot reviews are required
before merge. A whole final-tree local build/test or deployed suspension
is not claimed. Local provider, process and S3 boundaries are controlled
fixtures; no live GitHub provider or Railway/Neon suspension claim
follows.

## Risks

- These tests use real SQL and wall clocks and are opt-in. Their
fixtures must stay isolated and retain failed evidence.
- Stable fixture secrets must remain private and must not appear in
logs. Cleanup keeps them when owner closure is uncertain.
- The acceptance body stays shared to preserve measured evidence. The
named registration and command controls make selection failures visible.
- This PR does not change production, schema or feature enablement.

## Model Used

OpenAI `gpt-6.1-sol` produced the delegated acceptance work. OpenAI
Codex, based on GPT-6, performed managing review, source integration and
the preflight argument repair. Both used repository tools and code
execution. The coordinator's exact backend snapshot and context-window
size were not exposed.

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used
- [x] I have checked ROADMAP.md and confirmed this does not duplicate
planned core work
- [x] I have searched related PRs and linked the existing foundations
- [x] I have described the issue with the bug-template fields
- [x] I have not referenced internal or instance-local issues or links
- [x] My branch name describes the change
- [x] I have run the stated focused local tests and preserved their
limits
- [x] I have added or updated tests
- [x] I have documented the opt-in command and evidence requirements
- [x] I have documented risks
- [ ] All current-head CI gates are green
- [ ] Current-head Greptile is 5/5 with no open findings
- [x] I will address reviewer findings before merge

---------

Co-authored-by: Paperclip <noreply@paperclip.ing>
2026-11-06 18:15:56 -06:00
DottaandClaude Opus 5.5 7c673e695f fix(chat): name tasks by identifier, not UUID, in tool rows and agent text (#19635)
## Thinking Path

> - Paperclip is the open source app people use to manage AI agents for
work
> - New users meet Paperclip through the onboarding chat with their
first agent, and through task briefs that agents write
> - A browser walk of onboarding found internal handles and
control-plane jargon in those user-facing surfaces
> - A tool row showed `Read taskId: e3ecf9bc-…`, an agent-written brief
cited `task … (id 2b330993-…)`, and a Codex agent told a new user about
"receipts", "execution policy", and a "rejected policy patch"
> - Raw UUIDs and mechanism narration make the product look broken and
give the user nothing to act on
> - This pull request makes tool rows name a task by its identifier, and
tells agents to reference identifiers and to describe outcomes, not
mechanics
> - The benefit is that a new user sees "Read <task identifier>" and
plain progress updates

## Linked Issues or Issue Description

**What happened?**
In the task chat, a collapsed tool row rendered the raw call argument
`taskId: <uuid>`. An agent-written task description included a raw task
UUID next to the task identifier. A Codex chief of staff narrated
internal mechanics (receipts, execution policies, a rejected policy
patch) to a new user in chat.

**Expected behavior**
Tool rows name the task by its identifier. Agent-written text links
tasks and documents by identifier. Agents tell the user what happened,
what it means, and the next step.

**Steps to reproduce**
1. Run onboarding with the Codex API runner and accept a single-task
proposal.
2. Watch the handoff in the chief-of-staff chat.
3. See the task lookup tool row and the narration. With the Claude API
runner and the plan path, open a child task created from the plan and
read its description.

## What Changed

- `ui/src/components/task-chat/transcript-adapter.ts`: a tool row's
target never contains a UUID argument. A `taskId`/`issueId` UUID is kept
as `taskRefId` on the tool item.
- New `ui/src/components/task-chat/task-reference.ts`:
`useTaskReferenceLabel` reads the task from the shared issue detail
query cache and returns its identifier. It returns "task" until the task
resolves or when it cannot.
- `TaskChatRunnerActivityGroup` and `TaskChatToolCard` show that
identifier as the row subject. They load the task only for rows that
have a task reference.
- `skills/paperclip/SKILL.md` (Comment Style): two new required rules.
"No raw IDs in prose" and "Describe outcomes, not mechanics".
- First-task onboarding skill: a "Talk in outcomes" rule. Non-inline
handoff inputs use an identifier link, not a raw UUID.
- Chief-of-staff persona (`AGENTS.md` for the first agent): the same
plain-language rule, so it applies in every chat.
- `skills/paperclip-converting-plans-to-tasks/SKILL.md`: task
descriptions reference other tasks and documents by identifier link,
never by raw UUID.
- No change to `skills-releases/` snapshots. They are frozen releases.

## Verification

Red on master (fix files reverted, new tests kept):

```
ui  tool-row-task-reference.test.tsx
 FAIL  ... > falls back to a plain word while the task cannot be resolved
AssertionError: expected 'ReadtaskId: e3ecf9bc-099a-4b10-8169-9…' not to contain 'e3ecf9bc-099a-4b10-8169-9ce490a91e3d'
      Tests  3 failed (3)
server  user-facing-wording-guidance.test.ts
      Tests  6 failed (6)
```

Green with the fix:

```
ui  tool-row-task-reference.test.tsx        Tests  3 passed (3)
server  user-facing-wording-guidance.test.ts Tests  6 passed (6)
```

Neighbouring suites:

- `cd ui && npx vitest run src/components/task-chat
src/components/TaskChatThread src/components/transcript`: 70 files, 1448
passed, 1 skipped.
- From the repo root: `onboarding-first-task-assets`,
`paperclip-skill-utils`, `onboarding-first-task-admission`,
`hiring-operational-examples`, `cli-invocation-safety`, and the new
guidance test all pass.
- `pnpm check:token-gates`: all gates clean. The change adds no styles.
- `ui` typecheck: no errors in the changed files.
- Not run locally: `agent-skills-routes.test.ts` hit a 30 s `beforeAll`
import timeout on a cold cache. CI covers it.

## Risks

- Low risk. A row that names a task loads that task once through the
shared issue detail cache. The thread usually has it cached already. A
failed load shows "task" and does not retry.
- Rows now show other non-UUID arguments after the identifier (for
example `<identifier> · status: done`). Rows without a task reference do
not change.
- The skill text changes the guidance that agents read. They do not
change permissions, tools, or API behavior.

> For core feature work, check [`ROADMAP.md`](ROADMAP.md) first and
discuss it in `#dev` before opening the PR. Feature PRs that overlap
with planned core work may need to be redirected — check the roadmap
first. See `CONTRIBUTING.md`.

## Model Used

- Claude Opus 5.5 (`claude-opus-5-5`), Anthropic, run in Claude Code
with tool use (shell, file edits, test execution).

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have searched GitHub for duplicate or related PRs and linked
them above
- [x] I have either (a) linked existing issues with `Fixes: #` / `Closes
#` / `Refs #` OR (b) described the issue in-PR following the relevant
issue template
- [x] I have not referenced internal/instance-local Paperclip issues or
links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip`
URLs)
- [x] My branch name describes the change (e.g. `docs/...`, `fix/...`)
and contains no internal Paperclip ticket id or instance-derived details
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [x] All Paperclip CI gates are green
- [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups
- [x] I will address all Greptile and reviewer comments before
requesting merge

🤖 Generated with [Claude Code](https://claude.com/claude-code)

---------

Co-authored-by: Claude Opus 5.5 <noreply@anthropic.com>
2026-11-06 18:12:48 -06:00
DottaandClaude Opus 5.5 6c7cc2c5d6 fix(native): do not spend a recovery attempt resuming a cleanly drained run (#19625)
## Thinking Path

> - Paperclip is the open source app people use to manage AI agents for
work
> - Native runs have an execution recovery budget of three provider
attempts, so a run that keeps failing stops retrying
> - A graceful shutdown (deploy or SIGTERM) drains native runs: it
suspends them for reattachment by the next server
> - When the runner did not survive, the next boot resumed the turn and
charged one attempt
> - Restarts that the run did not cause used up its budget, so recovery
stopped and the task needed a manual Retry
> - This pull request does not charge an attempt for resuming a run that
a graceful drain suspended
> - The benefit is that deploys and graceful restarts no longer exhaust
a healthy run's recovery budget

## Linked Issues or Issue Description

**What happened?**
In restart-chaos testing, native runs reached
`execution_recovery_budget_exhausted` (3/3) only because of server
restarts. In one wave, two restarts crossed each of two runs. In a
second schedule (K1, then K2 when ready, then K2 again), each drain
correctly suspended the local ACPX Claude run, yet the fourth boot
blocked it with `native_restart_recovery_blocked`. Every resume after a
drain was classified `resume_dead_runner` and charged an attempt
(`nextNativeProviderAttempt` in `native-restart-recovery.ts`, applied by
the executor's execution claim).

**Expected behavior**
A restart that the run did not cause should not consume its recovery
budget. A graceful drain records `restart_suspended` and
`awaiting_runner_reattach`. The resume that follows should keep the
attempt count.

**Paperclip version or commit**
`master` at `4ef3fa4271`.

**Steps to reproduce**
Start a native local run. Send the server SIGTERM three times while the
run is active, with a full restart each time. The third resume is
blocked with `execution_recovery_budget_exhausted`.

## What Changed

- `suspendedByCleanDrain()` in `native-restart-recovery.ts` recognizes a
run whose most recent recovery claim is older than the drain's
`restart_suspended` entry. Ownership waits and deferred blocks between
the drain and the next claim do not erase it. The next claim consumes
it.
- A scan that waits for the old controller to exit (`awaiting_evidence`)
records one history entry per reason, so repeated scans cannot push the
drain record out of the bounded history.
- Restart claims carry `chargesProviderAttempt`. It is `false` for a
claim that follows a clean drain.
- `nextNativeProviderAttempt()` takes that flag. The executor passes it
when it takes the execution lease, so a drained resume keeps the current
attempt.
- The first execution is always counted: a run drained at attempt 0 (no
execution claimed it yet) still charges its first provider start.
- A run drained during its third attempt may continue that attempt. The
local resume and remote bootstrap gates skip the `>= 3` exhausted check
only for a non-charging resume, and the executor still refuses a fourth
attempt.
- A crash restart (no drain record) still charges one attempt.
Reattachment to a live runner still charges none.
- `doc/execution-semantics.md` states the rule next to the three-attempt
budget.

## Verification

- New test in
`server/src/__tests__/heartbeat-native-restart-suspension.test.ts`
(embedded Postgres, real heartbeat drain and restart recovery):
- Red before the fix: the claim after the drain had no
`chargesProviderAttempt: false`.
- Green after the fix, for drained attempts 0, 1 and 3: the crash claim
charges (`true`). After the drain, a controlled backend lets the
executor take its execution lease and records the saved
`native_run_finalizations.attempt` at provider dispatch: 1, 1 and 3.
Attempt 3 is claimed instead of blocked.
- Red at the executor: when the executor ignores the flag, the drained
attempt-1 resume saves 2.
- Ownership-wait case: the drained controller (the test process) is
still alive, so two scans wait. The history keeps `restart_suspended`
followed by one `awaiting_evidence` entry. After the controller is gone,
the claim does not charge, and attempt 3 continues.
- Classifier cases (local resume and remote bootstrap): attempt 3 after
a crash is still `execution_recovery_budget_exhausted`. Both new cases
were red on the previous revision.
- `heartbeat-native-restart-suspension.test.ts` 12/12,
`native-runner-restart-recovery.integration.test.ts` and
`native-runner-ownership.test.ts` 94 passed.
- `tsc --noEmit` for `server` passes.

## Risks

- A run that itself makes the server shut down gracefully, again and
again, would no longer be stopped by this budget. Graceful shutdowns are
operator or deploy actions, so this is unlikely. A crash loop (SIGKILL,
OOM) still charges an attempt on every restart, and a resumed turn that
fails still goes through the existing failure and replacement budget.
- This changes only the attempt count. Ownership checks, checkpoint
verification and the exhausted gate are unchanged.

> For core feature work, check [`ROADMAP.md`](ROADMAP.md) first and
discuss it in `#dev` before opening the PR. Feature PRs that overlap
with planned core work may need to be redirected — check the roadmap
first. See `CONTRIBUTING.md`.

## Model Used

- Claude Opus 5.5 (`claude-opus-5-5`), Anthropic, via Claude Code with
tool use (shell, file edits, test execution). Extended reasoning
enabled.

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have searched GitHub for duplicate or related PRs and linked
them above
- [x] I have either (a) linked existing issues with `Fixes: #` / `Closes
#` / `Refs #` OR (b) described the issue in-PR following the relevant
issue template
- [x] I have not referenced internal/instance-local Paperclip issues or
links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip`
URLs)
- [x] My branch name describes the change (e.g. `docs/...`, `fix/...`)
and contains no internal Paperclip ticket id or instance-derived details
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [x] All Paperclip CI gates are green
- [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups
- [x] I will address all Greptile and reviewer comments before
requesting merge

🤖 Generated with [Claude Code](https://claude.com/claude-code)

---------

Co-authored-by: Claude Opus 5.5 <noreply@anthropic.com>
2026-11-06 18:12:12 -06:00
Nicky LeachandClaude Opus 5.5 55244f1e9c test(server): remove two timing flakes in cloud adapter and native cleanup tests (#19668)
## Thinking Path

> - Paperclip is the open source app people use to manage AI agents for
work
> - Contributors wait for PR CI before merge, and a flaky test forces a
re-run of the whole CI run
> - Four server tests failed on 2026-11-06 on commits that passed on a
later attempt
> - Two of them failed because of real slowness inside a fixed time
limit on contended 4-vCPU runners
> - This pull request removes that slowness from the two tests. It does
not raise their time limits
> - Of the other two tests, one is already fixed on master, and one is
not reproduced (see below)
> - The benefit is fewer whole-run re-runs

## Linked Issues or Issue Description

**What happened?**

These tests failed in PR CI and passed on a re-run of the same commit:

- `server/src/adapters/cloud-external-adapters.test.ts` › "Cloud image
adapter boundary › cold boots built-ins…" failed with `Test timed out in
15000ms` (3 times).
- `server/src/__tests__/retained-native-session-cleanup-work.test.ts` ›
"drains a backlog across discovery pages…" failed with `Test timed out
in 15000ms` (2 times).

**Expected behavior**

Both tests pass on a loaded CI runner.

**Steps to reproduce**

1. Run the test file in a 4-CPU container (`docker run --cpus=4
--memory=16g`) with 4 copies at the same time.
2. Before this change, the adapter case fails in 4 of 4 runs at 15,008
to 15,041 ms.

## What Changed

- `cloud-external-adapters.test.ts`: add a `beforeAll` warm-up with a
90-second limit.
- The warm-up imports `registry.js`, `plugin-loader.js` and
`adapter-plugin-store.js` with an empty temporary home and the managed
signal, so it reads and runs no persisted adapter package.
- Before this change, the first case paid the one-time transform of the
whole built-in adapter graph inside its own 15-second budget. In CI the
first case timed out at 15 seconds, and the next case took 1.1 seconds.
- Each case still gets fresh module state from the existing
`vi.resetModules()`. No assertions change.
- `retained-native-session-cleanup-work.test.ts`:
- `flush()` takes an optional poll `interval`, which defaults to 50 ms,
so other tests do not change.
- The backlog test uses 5 ms. The worker admits one cleanup pass per
1-second fake-time step, so 103 entries need 103 polls in a row.
- The next wake is scheduled before a pass releases its idle-work hold,
so a faster poll cannot see a false quiet state. No assertions change.

## Verification

| Test | Before | After |
| --- | --- | --- |
| Adapter cold boot, container, 4 copies | failed 4/4 (15,008–15,041 ms)
| passed 4/4 (537–756 ms per case; the warm-up takes about 23 s) |
| Adapter cold boot, host | failed 2/2 | passed 3/3 (0.6–1.6 s) |
| Backlog drain, container, 4 copies with load | 6.3–6.6 s | 2.0–2.1 s |
| Backlog drain, host, unloaded | 5.1 s | 1.1–1.3 s (5 runs, 29/29 pass)
|

- Final host run of both files with `--maxWorkers=2`: 33/33 pass.
- The backlog test did not reach the 15-second timeout in local runs.
The evidence for that fix is the measured poll-bound cost.

**Not changed in this PR:**

- `connection-management.integration.test.ts` (expected 3 to be 2):
- Cause: a GitHub webhook recovery worker from an earlier test fetched
through the suite-wide fetch spy 60 seconds later.
- Master already fixes this with commit 0b48bc7ac5 (#19541). The failed
jobs ran on bases without that commit.
- `idle-completed-history.test.ts` (runtime service never ready):
- Not reproduced in a 4-CPU container, even with heavy load. CPU load
alone does not explain a child process that stays silent for 10 seconds.
  - A next step is to record spawn-to-listen timing in CI.

## Risks

- The adapter warm-up adds about 1 to 25 seconds to the file's
`beforeAll`, depending on load, but the test body becomes faster by the
same amount.
- If the adapter graph import becomes much slower, the 90-second warm-up
limit shows that as a clear hook timeout.
- Typecheck did not run locally. CI checks it. The edits are a
`beforeAll` import and a numeric default parameter.

## Model Used

- Claude Opus 5.5 (`claude-opus-5-5`) in Claude Code, with tool use and
code execution. A Claude sub-agent found the causes and made the fix,
and the parent session reviewed it.

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have searched GitHub for duplicate or related PRs and linked
them above
- [x] I have either (a) linked existing issues with `Fixes: #` / `Closes
#` / `Refs #` OR (b) described the issue in-PR following the relevant
issue template
- [x] I have not referenced internal/instance-local Paperclip issues or
links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip`
URLs)
- [x] My branch name describes the change (e.g. `docs/...`, `fix/...`)
and contains no internal Paperclip ticket id or instance-derived details
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [x] All Paperclip CI gates are green
- [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups
- [x] I will address all Greptile and reviewer comments before
requesting merge

🤖 Generated with [Claude Code](https://claude.com/claude-code)

Co-authored-by: Claude Opus 5.5 <noreply@anthropic.com>
2026-11-06 16:02:56 -08:00
DottaandPaperclip 6be71028ad Prepare online ephemeral enrollment through signed Cloud control (#19660)
## Thinking Path

> - Paperclip manages agent work through a control-plane web server.
> - A replacement web server needs shared durable data and the original
signing identity.
> - Existing enrollment exports that identity only after a global drain
and offline migration.
> - Online enrollment needs a separate preparation operation while agent
work continues.
> - This change adds a purpose-bound Cloud control operation with
existing data and key owners.
> - The result is an audited preparation receipt, with no permission to
stop agents or detach storage.

## Linked Issues or Issue Description

Refs #19038. Refs #19024.

**What are you trying to improve?**
Allow Cloud to prepare an already migrated tenant for volume removal
without the offline migrator or a global-idle gate.

**What problem does this solve?**
Cloud must preserve the original decision key before starting a
replacement with static ephemeral mode. A tenant session must never gain
key-export authority.

**What would the improvement look like?**
A fresh exact-action Cloud assertion obtains a private, deployment-bound
preparation receipt. Unfinished durable-data migration and invalid
replacement configuration block export.

## What Changed

- Add the signed `ephemeral-enrollment:prepare` control action and a
strict UUID-only POST route.
- Check existing durable-data eligibility and ephemeral configuration
before reading the original key. Never create a missing key.
- Audit only public preparation metadata. Keep HTTP diagnostics
secret-sensitive and the response non-cacheable.
- Bind the receipt to the attempt, stack, build commit, Railway
deployment, time, static mode and key digest.
- Always return `enrollmentReady: false`. Cloud still needs to arm a
replacement, verify old writers have stopped, repeat eligibility and
qualify native handoff before detaching the retained volume.

## Verification

- PASS: 80 focused tests across the preparation owner, signed route,
existing Cloud control, HTTP privacy and OpenAPI route coverage.
- PASS: 2 real PostgreSQL cases. Concurrent copies of one signed request
export once; the durable receipt still rejects reuse after clearing the
process fence. Normal run admission before skill pins is allowed;
missing durable skill installation remains blocked.
- Genuine prepatch RED: the same two PostgreSQL cases exported twice and
rejected ordinary admission. The fixed owner was restored automatically
after the comparison.
- PASS: server TypeScript check with workspace dependencies built.
- Fixed the first CI route-coverage failure by declaring this private
control endpoint in the existing explicit OpenAPI exclusion registry.
- Initial local HTTP execution lacked sandbox socket permission; the
reviewed run passed. Initial PostgreSQL fixtures enabled durable files
too late and reused an issue prefix; those fixture defects were
corrected before the red/green comparison.
- All required CI gates pass on
5346721847. Fresh Greptile review is 5/5
and all review threads are resolved. No deployment, volume detachment,
admission change or agent stop is performed by this PR.

## Risks

- The private response contains the original signing key. Only a fresh
stack-bound assertion for this exact action can obtain it. The Cloud
consumer must pass it directly to its existing vault owner and must not
expose it through admin responses or registry metadata.
- Eligibility is an observation. It cannot replace static writer
restrictions or qualified ownership handoff. This PR deliberately
supplies no detach or readiness authorization.
- Cloud transition integration is still required. This PR alone does not
enroll an instance.

## Model Used

OpenAI Codex, GPT-6 family, with reasoning, code execution and browser
tools. The host does not expose the exact serving model ID or
context-window size.

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have searched GitHub for duplicate or related PRs and linked
them above
- [x] I have either (a) linked existing issues with `Fixes: #` / `Closes
#` / `Refs #` OR (b) described the issue in-PR following the relevant
issue template
- [x] I have not referenced internal/instance-local Paperclip issues or
links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip`
URLs)
- [x] My branch name describes the change (e.g. `docs/...`, `fix/...`)
and contains no internal Paperclip ticket id or instance-derived details
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [x] All Paperclip CI gates are green
- [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups
- [x] I will address all Greptile and reviewer comments before
requesting merge

---------

Co-authored-by: Paperclip <noreply@paperclip.ing>
2026-11-06 18:00:28 -06:00
c82211251b test(chat): cover Slack forwarding deadlines through registered owners (#19348)
## Thinking Path

> - Paperclip is the open source app people use to manage AI agents for
work.
> - People answer agent questions through Slack commands, buttons, and
forms.
> - Slack requires a response within three seconds. A modal trigger also
expires after three seconds and can be used once.
> - Durable event delivery does not prove these synchronous response
paths.
> - This pull request exercises the registered app owners and pinned SDK
with original signed requests and controlled forwarding delays.
> - The tests record deadline failures without clearing invalid forms,
extending triggers, or changing production behavior.

## Linked Issues or Issue Description

Refs #19019, which has merged. This PR now targets `master`.

Related work: #8300 handles raw-body capture and plugin event fan-out.
#19328 handles Slack connection onboarding. This PR changes neither
path. I searched related open and closed work and read those PR bodies
and changed paths.

**What happened?**
A forwarding delay can leave an authenticated Slack callback too late to
acknowledge a command, exchange a modal trigger, or return field errors.
The existing direct modal test did not cover the normal registered
ingress or these provider deadlines.

**Expected behavior**
Tests must distinguish useful app persistence from a response that Slack
can still accept. They must preserve current authorization, field
validation, original signatures, and exactly-once effects.

**Steps to reproduce**
Use an owned PostgreSQL test database and the repository launcher below.
Run warm first. The default run adds one real 3500ms delay independently
before command, form-open action, and invalid submission forwarding.

**Paperclip version or commit**
Production remains byte-identical to
`54fa701d41b4ced62f4ff338d39b946015670ae3`. This test-only candidate is
`a3cce4e9868fd3e6e25d9df7d0090899bdf6a204`. It adds a recovery-fixture
setup guard after `dac0010649c435f673172c496b3383e99780e8bf`.

**Deployment mode**
Source-checkout integration test with real PostgreSQL, registered app
owners, and the pinned Slack SDK. Provider API responses and the
heartbeat receipt helper are controlled fixtures. No Slack account,
model process, deployment, or physical tenant suspension was tested.

## What Changed

- Route original signed command, action, and modal requests through the
normal chat service and real SDK runtime.
- Check forged-signature refusal, callback evidence, current-role
refusal, invalid-field errors, one corrected answer, and duplicate
fencing.
- Intercept the pinned SDK HTTP transport. Model trigger expiry and
one-use exchange without changing request timestamps or signatures.
- Observe the real platform exception through the actual bound
`views.open` callable. Delegate once and rethrow the same error.
- Restore the network guard after every setup failure. Attempt all owned
cleanup and preserve the original error before any cleanup errors.
- Guard auxiliary database cleanup when recovery test setup fails before
it creates a client. Keep temporary-cluster cleanup reachable and
preserve the original setup error.
- Add a repository launcher with the current prewire guard, one worker,
explicit test-database validation, and closed warm-only and
action-delayed-only selectors. The default still selects all four cases.

## Verification

- Current candidate `c6ae7957988e220ea096ab678f070d3bd1c5f9c0` normally
merges fetched master `8621bcf53ee2e4bbefb7d193add42dd544ca06e8`. All
three owned protocol/recovery acceptance files are byte-identical to the
preceding head. All other paths exactly match master. The shared Runner
default test conflict uses master's independently landed constant-based
repair. That supersedes this branch's temporary two-literal repair; no
fourth file remains in the PR diff.
- Original CI server4/12 had two stale `gpt-5.6-sol` expectations after
the normal default changed to `gpt-6.1-sol`. The complete failure log is
retained. Before the master repair landed, the focused two-literal
correction passed the whole six-case file with explicit-model,
non-Codex, lifecycle, permission and skill checks intact. That local
result is source-specific; it is not a fresh full merged-tree pass.
- The original guard-leak counterfactual reproduced unrestored global
network functions after setup rejection. The repaired callback passed
four controlled cleanup diagnostics. Cleanup attempts each initialized
owner and restoration even after a failure. It preserves the primary
error first and retains separate cleanup errors.
- A fresh registered SQL/SDK warm case passed on the qualified protocol
source with one persisted answer, 17.15 seconds total and normal
original assertions. Final independent SQL and recorded PID/group audits
were empty. A diagnostic sampler initially hit EPERM, and the worker
exit guard line was absent; those limits remain explicit. The cleanup
diagnostics are local qualification tools, not four newly checked-in CI
tests.
- Delayed modes remain explicit diagnostic commands. Ordinary CI runs
warm. Earlier mode results do not establish a final-source four-case
single-command pass. The provider transport is controlled; no live Slack
display, deployed sleep or wake result is claimed.
- The original server6/12 cleanup-backlog case hit its 15-second
whole-case timeout. Its phase and cause remain unknown. The original E2E
shard received runner shutdown without an assertion verdict. Complete
original logs are retained; neither failure has been labeled a flake or
repaired by extending a deadline.
- Own offline dependency setup passed with an unchanged lockfile. An
omitted private guard dependency initially prevented test entry; that
setup failure is retained separately from product results. The immutable
helper closure corrected it. No local full-repository
typecheck/build/test pass is claimed. Fresh exact-head CI and complete
edited bot reviews are required before merge.

## Risks

This is a test-only change. It changes no production code, credential
flow, schema, API, or sleep eligibility. The existing large integration
fixture remains large; this PR does not cross a file from below 1000
lines to above it and adds no code comments.

The provider transport is synthetic. The tests demonstrate deadline
consequences and app persistence, not that Slack displayed a late
response. They do not make commands or open forms safe while the tenant
sleeps. Other Slack lanes and persistent transports remain open work. CI
may expose additional harness assumptions.

The roadmap's Apps and Connections work is unchanged. This focused
regression complements the existing integration; it adds no separate
feature or provider setup path.

## Model Used

OpenAI, configured model `gpt-6.1-sol` in Codex. The exact served
backend revision and context window are not exposed. Assistance used
reasoning, source inspection, Git, native TypeScript checks, and
controlled integration tests. A coordinating GPT-6-family agent reviewed
boundaries and evidence.

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have searched GitHub for duplicate or related PRs and linked
them above
- [x] I have either (a) linked existing issues with `Fixes: #` / `Closes
#` / `Refs #` OR (b) described the issue in-PR following the relevant
issue template
- [x] I have not referenced internal/instance-local Paperclip issues or
links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip`
URLs)
- [x] My branch name describes the change (e.g. `docs/...`, `fix/...`)
and contains no internal Paperclip ticket id or instance-derived details
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [x] All Paperclip CI gates are green
- [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups
- [x] I will address all Greptile and reviewer comments before
requesting merge

---------

Co-authored-by: Paperclip <noreply@paperclip.ing>
Co-authored-by: Codex <noreply@openai.com>
2026-11-06 17:41:04 -06:00
DottaandPaperclip bb621880e6 fix(storage): preserve agent and skill files during online conversion (#19656)
## Thinking Path

> - Paperclip is the open source app people use to manage AI agents for
work.
> - Agent files and installed skills need durable storage before a
legacy volume can be removed.
> - Their maintenance commands currently require every writer to stop.
> - Normal file edits already use agent row locks and skill publication
locks.
> - Shared agent heads also remain durable while their agents run.
> - This pull request uses those owners to copy settled files online and
keeps unresolved recovery states intact.
> - The benefit is useful migration progress while unrelated work
continues.

## Linked Issues or Issue Description

Related: #19642.

**What happened?**

Agent-file adoption and skill installation conversion reject apply
requests without a global stopped-writer acknowledgement. Agent-file
maintenance also reports an active agent as blocked when its shared head
is already durable. Live enrollment omits the existing
unresolved-local-instruction-copy guard.

**Expected behavior**

Copy settled agent files and skill installations under their existing
writer locks. Keep old skill directories, versions, and inline bytes.
Keep unresolved local copies and unknown historical pin obligations
visible to their owners.

**Steps to reproduce**

Run agent-file maintenance with `--apply` on the original host with
durable storage enabled. A managed agent without active execution is
rejected without `--writers-stopped`. The same gate rejects skill
installation conversion. An agent that already has a shared head is also
reported as blocked while it runs.

## What Changed

- Adopt settled agent files under the existing agent row lock. Recognize
an existing shared head before checking active execution, without
rewriting its projection.
- Reuse the local working-copy preservation predicate for first adoption
and live enrollment. Keep its original public export.
- Prepare skill uploads outside the shared run-pinning lock. Verify the
exact local tree and source identity under the cache, slug, and row
publication locks. Publish catalog origin history in that same
transaction.
- Retain old skill directories, versions, and inline bytes. Keep pin
retention and volume-removal guards unchanged.
- Add PostgreSQL and filesystem coverage for active durable heads,
unresolved copies, concurrent source edits, and linked files. Update the
maintenance docs.

## Verification

- Agent-file durability and live enrollment suites: 16 tests passed with
real PostgreSQL and filesystem fixtures.
- Managed skill suite: 22 tests passed. Seven final controls also
passed: upload-time file edits, source relocation, unknown historical
pins, hard-linked files, pinning during a blocked upload, and both
rejected/successful catalog-origin publication.
- Server source typecheck and focused changed-test typecheck passed.
- Module boundaries, diff whitespace, and added-line
credential/internal-reference scans passed.
- Baseline production rejected both online paths at their stopped-writer
guards. Review regressions also reproduced a busy pinning lock during
upload and extra catalog history after rejection; their fixes passed
real PostgreSQL controls. All expected red results are preserved.
- One final-control attempt failed the existing 30-second fixture
startup hook before executing tests. A sequential retry passed all four
controls without changing guards or timeouts; the failed attempt remains
recorded.
- Exact head `001a5beed9d0e55c7c178906fbad1f9a47f87788`: [required CI
passed](https://github.com/paperclipai/paperclip/actions/runs/42309446426),
including typecheck, build, tests, Runner and end-to-end gates. Greptile
completed successfully at 5/5 with zero unresolved review threads;
GitHub reports mergeable/clean.

## Risks

Changed or unsafe sources remain blocked. Storage failures keep the
original files and recovery state. This conversion does not settle
retained provider copies or historical execution. Unknown pin
obligations still block retention and volume removal; this PR alone does
not qualify removal of the original volume.

## Model Used

OpenAI GPT-6 (Codex). The runtime did not expose a more specific backend
model ID or context-window size. Used reasoning, code editing, and tool
execution.

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have searched GitHub for duplicate or related PRs and linked
them above
- [x] I have either (a) linked existing issues with `Fixes: #` / `Closes
#` / `Refs #` OR (b) described the issue in-PR following the relevant
issue template
- [x] I have not referenced internal/instance-local Paperclip issues or
links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip`
URLs)
- [x] My branch name describes the change (e.g. `docs/...`, `fix/...`)
and contains no internal Paperclip ticket id or instance-derived details
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [x] All Paperclip CI gates are green
- [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups
- [x] I will address all Greptile and reviewer comments before
requesting merge

---------

Co-authored-by: Paperclip <noreply@paperclip.ing>
2026-11-06 17:31:04 -06:00
DottaandClaude Opus 5.5 a3f80ea043 fix(onboarding): close the onboarding task when its interview moves to chat (#19643)
## Thinking Path

> - Paperclip is the open source app people use to manage AI agents for
work
> - New users start in an onboarding task. The first agent can run the
onboarding interview there or in its chat.
> - #19512 moves the interview card to the chat when the agent asks it
there. The task's card expires.
> - The onboarding task then stays `in_review` with no card, run, wake
or reviewer. Review attention calls it "stalled".
> - Needs you then shows "Choose how this task continues" with Send back
to work / Request changes / Mark task done. A new user cannot know what
to pick. The card stays after the interview, plan approval and handoff
finish in chat.
> - This pull request closes the onboarding task when its interview
moves to chat, and links the chat in a system comment.
> - The benefit is that the user never decides what happens to an
internal task.

## Linked Issues or Issue Description

Refs #19512

**What happened?**
In a browser walk (Codex API path), the user chose "Interview me" in the
onboarding task. Then the user asked in Chat: "Can we do my onboarding
interview here in chat instead of in the task?". The chat card worked.
The onboarding task stayed `in_review`, and Needs you showed "Choose how
this task continues" for it until the end of onboarding.

**What did you expect?**
The onboarding task follows the conversation. It closes with a link to
the chat. No decision about an internal task goes to the user.

**Steps to reproduce**
1. Start onboarding. Choose "Interview me" on the onboarding task.
2. Open Chat with the agent. Ask to do the interview in chat.
3. Open Inbox. See "Choose how this task continues" for the onboarding
task.

## What Changed

- `server/src/services/issue-thread-interactions.ts`: after the chat
question supersedes the onboarding task's interview cards, the
onboarding task is closed (`in_review` → `done`) when no other card is
pending on it. A system comment links to the chat. The change writes an
`issue.updated` activity entry (`source: "onboarding_moved_to_chat"`).
Activity publications and issue post-commit actions run after commit.
- The task stays open if it is not `in_review` or if another card is
still pending (for example a card for a teammate).
- `first-task` skill: tells the agent that the task closes when
onboarding moves to chat. The chat then replaces the task for the rest
of the workflow (plan, proposal cards, child tasks, results). The agent
skips the steps that keep the task `in_review` or make it wait for a
child.
- `onboarding-assets/first-task/README.md`: documents the behavior.
- Tests in `server/src/__tests__/coordinator-handoff.test.ts`: the new
red/green case, plus a case that keeps the task open when another card
is pending.

## Verification

Red on master (fix reverted, same test):

```
 FAIL  src/__tests__/coordinator-handoff.test.ts > Coordinator canonical handoffs > resolves the onboarding task when its interview moves to the agent chat
AssertionError: expected [ 'stalled' ] to deeply equal []
- []
+ [
+   "stalled",
+ ]
 ❯ src/__tests__/coordinator-handoff.test.ts:257:40
    256|     // No "Choose how this task continues" stalled-review card for the…
    257|     expect(await stalledReviewCards()).toEqual([]);
      Tests  1 failed | 3 passed | 24 skipped (28)
```

The test reads the real Needs you feed (`attentionService.list`). On
master it holds a `review` item with `reviewAttentionState: "stalled"`
for the onboarding task. That is the "Choose how this task continues"
card.

Green with the fix:

```
cd server && npx vitest run src/__tests__/coordinator-handoff.test.ts
      Tests  28 passed (28)
```

Neighbour suites:

```
npx vitest run src/__tests__/onboarding-first-task-admission.test.ts src/__tests__/issue-onboarding-first-task-routes.test.ts \
  src/__tests__/issue-thread-interaction-routes.test.ts src/__tests__/issue-thread-interactions-service.test.ts \
  src/__tests__/issue-thread-interactions-telemetry.test.ts src/__tests__/coordinator-handoff.test.ts
 Test Files  6 passed (6)
      Tests  373 passed (373)
```

- `server` typecheck (`tsc --noEmit`): pass.
- `pnpm verify` exits 2 (the README is a broad input). Required CI
supplies broad coverage.
- Not run: a live browser walk. The Vitest case drives the same service
path the chat uses.

## Risks

- Low risk. The change runs only when an agent asks a question in its
own chat and that question supersedes a pending onboarding-task question
(the #19512 path).
- The onboarding task becomes `done` without a recorded first-task
decision. Later onboarding happens in chat, so nothing waits on this
task. A done onboarding parent still accepts child-completion report
wakes.
- The onboarding task rows are locked before their question rows, the
same order question creation on the task uses (Greptile review
follow-up). The chat row is locked first; no path locks an onboarding
task and then a chat row.

## Model Used

- Claude Opus 5.5 (`claude-opus-5-5`), Anthropic, via Claude Code with
tool use (shell, file edits, test runs).

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have searched GitHub for duplicate or related PRs and linked
them above
- [x] I have either (a) linked existing issues with `Fixes: #` / `Closes
#` / `Refs #` OR (b) described the issue in-PR following the relevant
issue template
- [x] I have not referenced internal/instance-local Paperclip issues or
links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip`
URLs)
- [x] My branch name describes the change (e.g. `docs/...`, `fix/...`)
and contains no internal Paperclip ticket id or instance-derived details
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [x] All Paperclip CI gates are green
- [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups
- [x] I will address all Greptile and reviewer comments before
requesting merge

🤖 Generated with [Claude Code](https://claude.com/claude-code)

---------

Co-authored-by: Claude Opus 5.5 <noreply@anthropic.com>
2026-11-06 17:27:39 -06:00
DottaandClaude Opus 5.5 0c904e2fd5 fix(tasks): treat a queued-message Interrupt as a hand-off, not a failed attempt (#19633)
## Thinking Path

> - Paperclip is the open source app people use to manage AI agents for
work
> - A user can send a message while an agent works. The message waits in
a queue strip above the composer. The strip has an **Interrupt** button
that stops the current turn so the message starts now.
> - In a browser walk of onboarding, Interrupt showed a red "Couldn't
finish this attempt. Your message is saved." banner with Retry. The
thread also showed two rows for the same stopped run ("Stopped for 22s"
and "Stopped after 21s"). After about 20 s it recovered by itself.
> - A stop that the user asked for is not a failure. The red banner and
Retry make a normal action look broken.
> - #19369 stopped resource waits from showing as failed attempts. This
is the same banner, reached through the Interrupt path.
> - This pull request shows the Interrupt hand-off as working, and
renders the stopped turn once.
> - The benefit is that steering a running agent looks calm and correct:
one stopped row, no error, and the queued message starts next.

## Linked Issues or Issue Description

Refs #19369 (same banner class, resource-wait path)

**What happened?**
While an agent ran, the user queued a message and clicked Interrupt on
the queued strip. A red banner "Couldn't finish this attempt. Your
message is saved." with Retry appeared at the top of the task. Two rows
showed the same stopped run: "Stopped for 22s" and "Stopped after 21s".
About 20 s later the banner went away and the message was delivered.

**Expected behavior**
A user Interrupt is not a failure. No red banner or Retry. One "Stopped"
row, and the queued message starts next.

**Steps to reproduce**
1. Start a task with a Paperclip Runner agent.
2. While it works, send a message so it waits in the queue strip.
3. Wait more than 10 s, then click Interrupt on the queued strip.
4. See the red banner, Retry, and two "Stopped" rows.

**Paperclip version or commit**
master e482f0f632

**Agent adapter(s) involved**
Not adapter-specific (core bug); seen with Claude API through Paperclip
Runner.

## What Changed

Cause 1 — banner
(`server/src/services/task-interruption-presentation.ts`):
- The Interrupt route cancels the run with
`queuedCommentInterruptQueueId` set to the queued wake, and stamps
`queuedCommentInterrupt.requestedAt` on that wake. The projection skips
its "intentional Stop" rule whenever a pending wake exists, and treats a
pending wake as "working" only for 10 s after the message was *queued*.
A message queued earlier than 10 s before Interrupt, or a cleanup that
takes longer than 10 s, fell through to `state: "failed", canRetry:
true`.
- The projection now reads `queuedCommentInterruptQueueId` from the run
and `queuedCommentInterrupt.requestedAt` from the wake (both bounded
strings in the existing batched queries). When the cancelled run was
stopped for exactly the pending wake, it returns `working` for up to 5
min after the click. Pause, approval, reconnect and other user actions
stay first. A pending Retry preparation and exhausted system recovery
keep their own presentation. After 5 min, a hand-off that never started
shows one Retry, as before.

Cause 2 — two rows (`ui/src/components/TaskChatThread.tsx`):
- When a native runner turn ends, the live tail stays until the settled
turn *and* its reply comment render, or a 15 s backstop expires. A
stopped turn posts no reply, so the tail stayed for 15 s next to the
settled turn. That gave "Stopped after 21s" (live tail) and "Stopped for
22s" (settled turn).
- A cancelled settling run now hands off as soon as its settled turn
renders.

Tests:
- `server/src/__tests__/task-interruption-query.test.ts`: new
embedded-Postgres test drives the real batched query with the exact
`resultJson` the Interrupt route writes. It checks `working`/no Retry/no
Sentry failure capture, a run stopped for a different queue still fails,
and the 5 min bound.
- `ui/src/components/TaskChatThread.test.tsx`: new test renders a live
native runner turn, then the cancelled run with no reply. It checks
there is no live tail and exactly one "Stopped" row.

## Verification

Red on master (tests added before the fix):

```
$ npx vitest run src/__tests__/task-interruption-query.test.ts -t "queued-message Interrupt"
 FAIL  task interruption latest run query > shows a queued-message Interrupt as handing off, not as a failed attempt
AssertionError: expected { …(8) } to match object { state: 'working', …(2) }
-   "canRetry": false,
+   "canRetry": true,
-   "state": "working",
+   "state": "failed",
 Tests  1 failed | 18 skipped (19)
```

```
$ npx vitest run src/components/TaskChatThread.test.tsx -t "interrupted native turn"
 ❯ src/components/TaskChatThread.test.tsx:5528:82
    expect(container.querySelector('[data-testid="task-chat-live-transcript"]')).toBeNull();
 Tests  1 failed | 368 skipped (369)
```

Green after the fix:

```
$ npx vitest run src/__tests__/task-interruption-query.test.ts src/services/task-interruption-presentation.test.ts
 Test Files  2 passed (2)
      Tests  60 passed (60)

$ npx vitest run src/components/TaskChatThread.test.tsx -t "interrupted native turn"
 Tests  1 passed | 368 skipped (369)
```

Local `pnpm verify` (affected Vitest selection) result is added in a
follow-up comment; required CI supplies typecheck, build and the full
suite.

## Risks

- Low risk. Both changes are presentation only. Admission, cleanup and
Stop gates do not change.
- A hand-off that is blocked for a long time now shows no banner for up
to 5 min. The queued strip still shows its own wait text ("Waiting for
the previous run to finish recovery…") during that time, so the wait is
visible. After 5 min, Retry returns.
- The thread change applies only to a settling run with status
`cancelled`. Failed and succeeded runs keep the existing reply-comment
hand-off.
- Not in scope: the task status icon changed to `todo` during the
hand-off. That is the issue status, not this projection.

## Model Used

- Claude Opus 5.5 (`claude-opus-5-5`), Anthropic, via Claude Code with
tool use (shell, file edit, test execution).

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have searched GitHub for duplicate or related PRs and linked
them above
- [x] I have either (a) linked existing issues with `Fixes: #` / `Closes
#` / `Refs #` OR (b) described the issue in-PR following the relevant
issue template
- [x] I have not referenced internal/instance-local Paperclip issues or
links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip`
URLs)
- [x] My branch name describes the change (e.g. `docs/...`, `fix/...`)
and contains no internal Paperclip ticket id or instance-derived details
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [ ] All Paperclip CI gates are green
- [ ] Greptile is 5/5 with no open P2s, recommendations, or follow-ups
- [x] I will address all Greptile and reviewer comments before
requesting merge

🤖 Generated with [Claude Code](https://claude.com/claude-code)

---------

Co-authored-by: Claude Opus 5.5 <noreply@anthropic.com>
2026-11-06 17:18:04 -06:00
DottaandPaperclip c9391720a1 fix(heartbeat): send saved follow-ups after task completion (#19600)
## Thinking Path

> - Paperclip manages agents and their work.
> - Task messages remain in a durable queue while an earlier run saves
its result.
> - That result can mark the task done before the user sends the saved
messages.
> - Send records current user intent, but its wake guard allowed only
active task states.
> - The old queue therefore remained pending with an obsolete
finalization message.
> - This change admits that exact Send receipt and reopens the task
through the issue service in the successor transaction.
> - The agent can receive the saved input once while the completed
result remains unchanged.

## Linked Issues or Issue Description

**What happened?**

Send on a saved message can leave the message queued after its native
predecessor succeeds and commits. The old wait message remains visible.
Allowing admission alone also fails: continuation construction rejects a
task that remains done.

**Expected behavior**

Explicit Send must deliver the saved input once through normal
admission. It must retain the previous run and its result.

**Steps to reproduce**

1. Save a follow-up while a native run finishes its result.
2. Let that run succeed, commit its accepted result, and mark the task
done.
3. Send the saved follow-up. Before this change, the receipt stays
deferred.

Related public work: Refs #19542. That change selects recovered
workspace files. This change handles the later saved-message admission.
Refs #19602 for the independent workflow fixture repair required by CI.

## What Changed

- Allow the exact explicit Send wake guard to accept a done task. Keep
automatic recovery and cancelled task guards unchanged.
- Reopen the task through the company-scoped issue service after
admission gates pass. Commit reopening, queue consumption and the
successor together. Publish the audit after commit.
- Add a native succeeded/committed predecessor regression with unchanged
saved work and one successor after two resume calls.
- Verify real heartbeat startup under the clicking operator. Keep
automatic input, cancelled tasks and paused agents held.
- Check workspace preflight for the prospective reopened task. Use the
normal company-scoped transition if preflight blocks a done task, so its
completion metadata is cleared.
- Check a successful native predecessor for its committed accepted
result, current ownership and pending cleanup. Keep approvals and
questions effective even without a recovery action.
- Document the saved Send contract and update the queue test dependency.

## Verification

- Final merge qualification for
`675914f0fa9b5eb1d2c9c8fcd448e0669d0c4836`: all 56 applicable status
checks pass, with no pending or failed checks. [Final
CI](https://github.com/paperclipai/paperclip/actions/runs/42307623559)
includes typecheck, build, all applicable test and E2E shards, and
aggregate verification. Current-head Greptile is 5/5; all five review
threads are resolved. Any paused or queued application review is not
claimed as a new completed review.

- Final base qualification at
`675914f0fa9b5eb1d2c9c8fcd448e0669d0c4836`: official preflight passes
(1.5s); all six integrated model-normalization cases pass (19.07s); both
affected test typecheck layers pass. The integration changes no
production server/shared/Runner/adapter inputs, so the preceding 12-case
Send proof, two ordinary status guards, and unchanged production
typecheck layers remain applicable. Fresh final-head CI supplies broad
coverage.

- New review regression: both failed and cancelled native predecessors
on a task manually marked Done fail before the repair with
`continuation_task_ownership_changed` through real
`resumeQueuedCommentInterrupt` admission. At
`bfb0eff7941090ac3ac43ce4366ba2e3d46612e9`, all 12 affected
Send/source/cleanup/workspace/decision cases pass (246.80s), ordinary
Done/cancelled rejection cases pass (2; 100.31s), and all seven server
typecheck layers pass. History validation uses the prospective reopened
status only for an already-verified explicit native Send. No status is
changed during a dry run.
- Prior `e64e4bb1` CI passed the affected serialized server suites,
including the complete saved-message route suite, typecheck and build.
General server shard 4 still failed two unrelated stale default-model
expectations (`gpt-5.6-sol` versus the new `gpt-6.1-sol` default). The
equivalent repair has already merged in #19610 as
`8621bcf53ee2e4bbefb7d193add42dd544ca06e8`; the separately prepared
#19645 is closed as superseded. This source fix does not weaken or edit
those assertions.

- Original RED: the committed-source and completed-task startup cases
left the saved receipt deferred.
- Review RED: Done plus an unrunnable isolated worktree created one
successor instead of zero. A successful committed predecessor with
pending lease cleanup also created one instead of zero. The new
Done-to-blocked path retained stale completion time. Pending approvals
and questions each allowed a successor. All failures were captured
before their respective repairs.
- Integrated production revision
`99018264dd1ef002ff3500378184bcd167d9206b`: 417 affected cases pass
across the complete native continuation, responsible-user startup, and
workspace preflight suites (386 + 18 + 13). These include the original
successful startup case and six cleanup/finalization faults that hold
the exact saved receipt until settlement, then deliver it once.
- `pnpm --filter @paperclipai/server typecheck` passes all seven layers
on that integrated head, including the local Runner/SDK dependency
build. Module-boundary, whitespace, and added-code-comment checks pass.
- Normal master integrations preserve branch history. No force push or
assertion weakening was used. Fresh CI and automated review are running
on `675914f0fa9b5eb1d2c9c8fcd448e0669d0c4836`, which normally integrates
the already-merged #19610 fixture repair after the reproduced inherited
CI failure.
- The earlier CI attempt failed in five unchanged workflow fixture cases
because IMAGE_ONLY was unset. The merged #19602 repairs that fixture. A
later inherited duplicate default in that independent fixture has a
separate repair; this PR does not edit it.
- Follow-up route-fixture RED: three existing native queue delivery
cases failed because their fixture marked a run successful without an
accepted result or committed finalization. The same three cases pass
after the fixture records the complete native success contract (42.08s);
delivery assertions and production gates are unchanged. The affected
test-tree TypeScript layer also passes. The full route run passed all
119 assertions but failed its 30-second database teardown hook, so it is
not recorded as a suite pass. That result is retained. One unchanged
bounded rerun was stopped after more than 15 minutes without a final
verdict; it is inconclusive, not a pass.
- Final integrated head `e64e4bb1`: all 13 focused route and
completed-task admission cases pass across two real-PostgreSQL suites
(188.95s), including the three repaired route fixtures and every new
cleanup/finalization/decision hold. Fresh preflight passes; all seven
server typecheck layers pass. Required final CI supplies the broader
route and server coverage.
- These tests use real PostgreSQL and normal admission, cleanup, queue
consumption, and startup services. The startup suite controls the
provider boundary. Hosted provider acceptance remains pending normal
deployment.

## Risks

- Explicit Send can reopen a done task. This is limited to its validated
saved receipt and current assignee. A cancelled task remains held.
- Reopening uses the existing company-scoped issue transition and shares
the successor transaction. A failed admission does not reopen the task.
Provider Stop, workspace, approval, pause and budget checks retain their
existing owners.
- Cleanup and pending decisions retain the done task and saved receipt.
An unrunnable workspace uses the existing blocked-task diagnostic. No
schema or runtime package changes.

## Model Used

- OpenAI Codex, GPT-6 family; exact serving snapshot/context window not
exposed; repository analysis, code editing, tool execution.

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have searched GitHub for duplicate or related PRs and linked
them above
- [x] I have either (a) linked existing issues with `Fixes: #` / `Closes
#` / `Refs #` OR (b) described the issue in-PR following the relevant
issue template
- [x] I have not referenced internal/instance-local Paperclip issues or
links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip`
URLs)
- [x] My branch name describes the change (e.g. `docs/...`, `fix/...`)
and contains no internal Paperclip ticket id or instance-derived details
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [x] All Paperclip CI gates are green
- [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups
- [x] I will address all Greptile and reviewer comments before
requesting merge

---------

Co-authored-by: Paperclip <noreply@paperclip.ing>
2026-11-06 17:15:07 -06:00
DottaandPaperclip 2e340d6235 fix(ui): show unread message counts in agent chat pickers (#19627)
## Thinking Path

> - Paperclip helps people manage AI agents and their work.
> - People switch between agent chats to read replies.
> - The agent picker does not show how many messages are unread.
> - People need that count before they select a chat.
> - The chat list already has the viewer's read state.
> - This pull request adds numeric badges from that shared list.
> - People can find unread replies without extra requests for each
agent.

## Linked Issues or Issue Description

**What existing behavior does this improve?**

The chat header agent picker and the secondary sidebar's Add chat
picker.

**Subsystem affected**

Agent Chat UI, shared task types, and the chat read-state service.

**Current behavior**

The pickers do not show the unread message count for each agent.

**Proposed behavior**

Show the unread count beside each agent. For example, show 3 for three
unread agent messages. Hide the badge when the count is zero. Keep
switching available while chat data loads.

**Reason and benefit**

People can see which chats need attention before they switch. The count
uses the existing shared request and cache.

**Breaking changes**

The chat response gains an optional `unreadMessageCount` field. Existing
fields and read receipts keep their behavior. There is no database
migration.

**Additional context**

Related: #19425 changes chat structure. This change adds counts to the
current agent pickers. The duplicate search found no PR for these count
badges.

## What Changed

- Count unread agent comments in the existing grouped read-state query.
Keep company and viewer scope.
- Exclude human messages, deleted comments, system notices, and
fast-response receipts.
- Pass memoized count maps to both agent pickers. Use a direct lookup
for each row.
- Show numeric badges and accessible singular or plural labels.
- Test count changes, account isolation, cached opens, search, and large
agent lists.
- Update the chat stories, fixture data, and development guide.
- Make the Slack owner retry-deadline test deterministic after
reproducing its CI failure.

## Verification

- On current head `05f5fa6201`, the [main CI
workflow](https://github.com/paperclipai/paperclip/actions/runs/42305845930)
passed, including build, typecheck, all applicable test shards, browser
shards, and final verification. The prior server shard 2, 6, and 7
failures do not recur.
- [Greptile's current-head
review](https://github.com/paperclipai/paperclip/pull/19627#issuecomment-6696161631)
is 5/5, its check succeeded, and both previous review threads are
resolved. Current head check inventory is complete: 55 successful
checks, three intentional skips, and no pending or failed checks. The
Paperclip application review summary reports paused; no new completed
Paperclip review is claimed. Its existing findings are resolved, and the
independent current-head Greptile review is 5/5.

- Current head `05f5fa6201` merges master `8621bcf53e` to resolve an
import conflict. Master now includes the same model-default test repair.
This branch keeps its upstream import, so that file no longer differs
from master.
- After this merge: all 21 server tests in the Slack owner and
model-default suites pass, all 22 tests in the three picker/sidebar
suites pass, and token gates pass. The standard preflight still cannot
build Rust because `cargo` is absent. Fresh CI must supply the broad
checks.

- Head `7d125fb8c7` replaces the Slack owner test's real timer wait with
the worker's existing clock input. It checks that the intent stays
pending one millisecond before the retry deadline and clears at the
deadline. All 15 Slack owner integration tests pass locally. Runtime
retry behavior is unchanged.
- On `4cfb1e9d55`, both review checks gave 5/5. CI [server shard
2](https://github.com/paperclipai/paperclip/actions/runs/42302458830/job/128183671349)
failed the Slack credential-lease retry test. The same assertion failed
in an unchanged local run. A diagnostic run with added logging passed;
the exact timer deviation was not captured. The new test removes the
real-time wait assumption and checks the clock boundary directly. The
earlier model-default and cleanup failures did not recur in that CI run.

- On `a3378dfc40`, both Greptile and Paperclip Review gave 5/5 with no
open findings. Typecheck, build, all eight browser shards, and most test
shards passed.
- That CI attempt failed two server shards. The model-default test still
expected `gpt-5.6-sol`, while the current default is `gpt-6.1-sol`. I
reproduced both failures locally. Commit `4cfb1e9d55` uses the exported
default-model constant; all six tests in that suite now pass. Production
model selection does not change.
- The retained-cleanup backlog test exceeded its 15-second limit in
[server shard
6](https://github.com/paperclipai/paperclip/actions/runs/42299858777/job/128175193320).
The unchanged test passes locally with the same limit. Its CI timeout
cause is not established. No assertion or timeout was changed. The fresh
CI run must recheck it.

- Review repair: commit `0db631b215` keeps the existing-chat and
unread-agent arrays stable when chat data and the active agent do not
change. A new 500-agent test fails before the repair and passes after
it. The test also checks count refreshes.
- The first CI typecheck failed on duplicate `IMAGE_ONLY` and
`TESTOPS_REQUESTED` keys in `tests/runner-e2e/workflow-target.test.ts`.
This was present in upstream code. Master commit `e482f0f632` removes
the duplicate keys. This branch now includes that commit. All nine
workflow-target tests pass locally.
- After the latest master merge: all 22 tests in the three affected
picker/sidebar suites pass. Before that merge, all 38 focused UI tests
passed.
- The current head is `05f5fa620134ad199a3d85b66fb2eb93d3bb6077`. All
current status checks are complete, the aggregate verify gate succeeds,
mergeability is CLEAN, and no unresolved review threads remain. The
maintainer has instructed normal merge after checks pass.

- After merging current master: 37 focused UI tests pass across
AgentChatPicker, CoordinatorAgentSwitcher, AgentConversationsSidebar,
useAgentChatRead, and SidebarAgentChats.
- After merging current master: all 38 proactive-chat integration tests
pass with a real disposable PostgreSQL database. They check counts of 2,
1, and 0 at exact read cutoffs.
- The prior revision passed UI typecheck and build, shared build,
isolated low-memory server typecheck, token gates, and 30 map/catalog
tests.
- The 500-agent test bounds index work and count lookups. Search does
not rebuild the existing-chat index.
- Browser checks used production components with simulated API data.
Dark, light, mobile, and Add chat cases passed. Counts of 3 and 12
stayed visible through search. Read agents had no badge. Cached opens
made no chat API requests.
- Twenty local cached opens took 34.5–57.6 ms, with a 38.4 ms median.
This is an unthrottled fixture measurement.
- Earlier full local checks could not complete because Rust cargo is
absent and the workspace has limited memory. The standard worktree
preflight also stops at missing cargo. Required CI must supply broad
checks for this PR head.
- The first server typecheck ran out of memory while Storybook was
active. Its isolated low-memory retry passed. No visual baseline
comparison or live provider delivery is claimed.

## Risks

- Low risk. The count replaces a boolean aggregate in the same grouped
query. Very long chat histories still need that existing scan.
- A count can be stale until the existing chat-list cache refreshes.
Read receipts still control the unread cutoff.
- The change adds no polling, per-agent history request, database
migration, or permission change.

## Model Used

OpenAI GPT-6 through Codex, with code editing, terminal tools, and
browser verification. The runtime did not expose a more specific served
model ID or context-window size.

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have searched GitHub for duplicate or related PRs and linked
them above
- [x] I have either (a) linked existing issues with `Fixes: #` / `Closes
#` / `Refs #` OR (b) described the issue in-PR following the relevant
issue template
- [x] I have not referenced internal/instance-local Paperclip issues or
links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip`
URLs)
- [x] My branch name describes the change (e.g. `docs/...`, `fix/...`)
and contains no internal Paperclip ticket id or instance-derived details
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [x] All Paperclip CI gates are green
- [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups
- [x] I will address all Greptile and reviewer comments before
requesting merge

---------

Co-authored-by: Paperclip <noreply@paperclip.ing>
2026-11-06 17:10:56 -06:00
Nicky LeachandClaude Opus 5.5 913102870d fix(environments): fill the managed instance default once, under a lock (#19632)
## Thinking Path

> - Paperclip is the open source app people use to manage AI agents for
work
> - On a managed instance under `enableManagedSandboxOnly`, boot points
the instance default at the managed sandbox when nothing deliberate is
set
> - That write read the default and wrote it later without a lock. Two
overlapping boots, or a boot and an admin write, could overwrite a value
the other had just committed
> - A revert path also reset that stamped default whenever the mode was
turned off, so a platform-filled default could change again later
> - A planned plugin-environment default should fill only an unset
default and never change a set one, which needs every instance's default
to stay set
> - This pull request makes the fill one locked transaction and removes
the revert, so a filled default is an ordinary set value
> - The benefit is a single, race-free rule: boot fills an unset default
once, and nothing changes a set default afterwards

## Linked Issues or Issue Description

Refs #19551 (the plugin-environment default that builds on this rule)

**Subsystem affected**
Server environments: the managed environment bootstrap and the instance
settings route.

**Problem or motivation**
`applyManagedEnvironments` read the instance default, decided, and wrote
it in separate steps with no lock, so a concurrent boot or admin write
could be overwritten. When `enableManagedSandboxOnly` was not declared,
a revert reset a default the platform had filled. That needed a
`managedDefaultStamped` marker, plus a marker clear on every admin
default write. A later boot could therefore change a default that had
already been set.

**Proposed solution**
Fill the default in one transaction that locks the instance default row
and rechecks it. Fill only an unset, local or deleted default. Remove
the revert and its marker, so a filled default behaves like any other
set value.

**Alternatives considered**
Keeping the revert and adding locks to it. A revert on a mode change
would still move an existing instance's default later, which a fill-only
plugin default cannot tolerate.

**Roadmap alignment**
This narrows existing managed-environment behaviour. It adds no product
surface.

## What Changed

- New `server/src/services/managed-instance-default.ts`:
`fillUnsetInstanceDefault(db, environmentId)`. In one transaction it
creates the settings row if needed, locks the instance default row (`FOR
UPDATE`), and rechecks the current value. It writes only when the
default is unset, names the local environment, or names a deleted
environment. Any other set default is kept.
- `server/src/services/managed-environments.ts`:
- Under `enableManagedSandboxOnly`, the managed sandbox fill now uses
that helper, through a new `fillInstanceDefault` test seam.
- The mode-off revert and the `managedDefaultStamped` marker are
removed.
- The unused `instanceSettings` seam option is removed, along with the
`getById`, `update` and `findManagedSandboxEnvironment` methods of the
environments seam.
- `server/src/routes/instance-settings.ts`: an explicit default write is
a plain `update` again. The marker clear and its transaction are gone.
- `doc/DEVELOPING.md`: the "Managed environments" section states the
fill rule.

Existing rows may still carry `managedDefaultStamped` in their metadata.
Nothing reads it any more, and it is not part of the managed stock hash.

## Verification

- `cd server && npx vitest run
src/__tests__/managed-instance-default.test.ts` (embedded Postgres):
- The fill writes an unset default, including on a fresh instance with
no settings row. It also writes a default that names the local
environment, or one whose environment was deleted.
- It never changes a default set to an ssh, plugin or other sandbox
environment, and leaves a default that already names the target alone.
- Controlled overlap: an uncommitted admin default write makes the fill
wait, and the fill then keeps the admin's value. This test fails without
the row lock.
  - Two overlapping fills: exactly one writes.
- Real boot pass: the default is filled under managed-sandbox-only and
stays the same after a boot with the mode off. A set default stays on
every boot.
- `npx vitest run src/services/managed-environments.test.ts
src/services/managed-environments-plugin-entries.test.ts`: the fill runs
only under managed-sandbox-only, with the managed sandbox row. It never
runs for a plugin environment. Nothing is written when the mode is off.
A failed fill does not fail the ensure.
- `npx vitest run src/__tests__/instance-settings-routes.test.ts`: an
explicit default write is a plain update that touches no environment
row.
- `npx vitest run src/__tests__/managed-plugin-environments.test.ts
src/__tests__/environment-routes.test.ts
src/__tests__/server-startup-feedback-export.test.ts
src/__tests__/instance-settings-service.test.ts`: pass.
- `pnpm --filter @paperclipai/server typecheck` passes.
- I did not run the full `pnpm test:run`, `pnpm -r typecheck` or `pnpm
build`. CI covers them.

## Risks

- Behaviour change: when `enableManagedSandboxOnly` is turned off for an
instance, a default the platform filled with the managed sandbox now
stays. Local execution is still allowed then, but it is no longer the
default unless an admin picks it.
- No schema change. Stale `managedDefaultStamped` keys stay in some row
metadata and are ignored.
- The fill holds the instance default row lock for one short transaction
at boot.

> For core feature work, check [`ROADMAP.md`](ROADMAP.md) first and
discuss it in `#dev` before opening the PR. Feature PRs that overlap
with planned core work may need to be redirected — check the roadmap
first. See `CONTRIBUTING.md`.

## Model Used

- Claude Opus 5.5 (`claude-opus-5-5`), Anthropic, through Claude Code
with tool use (file edits, shell, test runs).

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have searched GitHub for duplicate or related PRs and linked
them above
- [x] I have either (a) linked existing issues with `Fixes: #` / `Closes
#` / `Refs #` OR (b) described the issue in-PR following the relevant
issue template
- [x] I have not referenced internal/instance-local Paperclip issues or
links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip`
URLs)
- [x] My branch name describes the change (e.g. `docs/...`, `fix/...`)
and contains no internal Paperclip ticket id or instance-derived details
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [x] All Paperclip CI gates are green
- [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups
- [x] I will address all Greptile and reviewer comments before
requesting merge

🤖 Generated with [Claude Code](https://claude.com/claude-code)

Co-authored-by: Claude Opus 5.5 <noreply@anthropic.com>
2026-11-06 15:01:58 -08:00
Devin FoleyandPaperclip 8621bcf53e Cancel subscription sign-in requests when leaving agent setup (#19610)
Back during pending subscription sign-in could accept a late response and
reopen agent setup. Abort pending reads, release abandoned sessions, and
ignore stale responses. Wait for cleanup before starting a replacement,
and preserve sessions belonging to another account or environment.

Cover deferred resume/start/prompt responses for both providers, local
login cancellation, quick reselection, and browser request abort. Stabilize
Runner fixtures and normalization assertions exposed by integration CI.

Verified: 483 focused UI tests, six onboarding browser cases, UI typecheck
and token gates, Runner fixture checks, and the complete CI run on
221f2e3eb7. Greptile scored 5/5;
all review threads are resolved. Earlier failures and recovery evidence
remain in the PR description.

Co-Authored-By: Paperclip <noreply@paperclip.ing>
2026-11-06 14:31:11 -08:00