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Author SHA1 Message Date
Dotta 55d7df2bad fix(runtime): bound checkpoint data and preserve durable failed sessions (#18959)
## Thinking Path

> - Paperclip manages AI agents and their work.
> - Native Runner checkpoints preserve controller state across server
replacements.
> - Enrollment imports legacy controller state into those durable
checkpoints.
> - The importer passed extra source fields into each encrypted record,
duplicating the whole source and exhausting memory.
> - Some failed runs already had durable checkpoints but no session
snapshot. Re-importing them incorrectly required resumable state.
> - This PR stores only each record's binding and contents, and
preserves matching failed checkpoints without changing their recovery
status.

## Linked Issues or Issue Description

Refs #18957 and #18943.

**What happened?**

A 538-record migrated checkpoint stored 1,108,851,510 bytes of encrypted
material. Every record included the full 1.4 MB legacy source. Large
writes disconnected and later reads exhausted memory.

**Expected behavior**

Each encrypted record contains only its company, issue, run, part and
contents.

**Steps to reproduce**

Run offline controller migration with a retained controller that has
many commands. Decrypt a saved envelope and inspect its fields. The old
writer also includes the entire offline migration input.

**Paperclip version or commit**

Reproduced on `a1f3637c96dfadaf3a15ae9c83aa8227f4fed20e`.

## What Changed

- Serialize only company, issue, run, part and contents in encrypted
checkpoint envelopes.
- Preserve an already-durable failed checkpoint when its run, runner and
session match and the legacy session snapshot is absent. Keep its
failure, recovery blockers, owner and pointers unchanged.
- Report the number of failed checkpoints preserved during maintenance.
- Test exact encrypted contents, idempotent preservation after removing
the old home, and rejection of successful or foreign-session sources.
- Document the migration findings and verification boundaries.

## Verification

- The oversized-envelope regression failed before the serializer fix.
- The already-durable failed-source regression failed before the
preservation fix.
- Four focused test files: 44 tests passed. The migration suite passed
all 5 tests again after adding the foreign-session control.
- Server typecheck passed. Greptile reviewed `c4f02a064c` at 5/5 with no
findings. The exact-head PR workflow passed, including typecheck, build
and all required tests.
- Live staging repair preserved all 16 affected checkpoint sets: 2,982
records, 6,400,144,676 bytes reduced to 15,419,528 bytes. Each record
matched its legacy source and passed re-encryption verification.
Original encrypted rows and source files remain on the retained volume.
- Full hosted enrollment and active-agent deployment proof remain
pending. Deployment will follow the normal staging release pipeline.

## Risks

The serializer affects normal and migrated checkpoint writes. The
decoder already accepts the same five fields and continues to accept
older envelopes. Preservation applies only to a failed run with an
exact, validated durable checkpoint and no session snapshot; it grants
no new recovery authority. This change does not rewrite existing
database records automatically. Existing failures and missing provider
files remain failures until their owning recovery path resolves them.

## Model Used

OpenAI Codex, GPT-6 family, with reasoning, tool use and code execution.
The exact deployment model ID and context-window size are not exposed in
this session.

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have searched GitHub for duplicate or related PRs and linked
them above
- [x] I have either (a) linked existing issues with `Fixes: #` / `Closes
#` / `Refs #` OR (b) described the issue in-PR following the relevant
issue template
- [x] I have not referenced internal/instance-local Paperclip issues or
links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip`
URLs)
- [x] My branch name describes the change (e.g. `docs/...`, `fix/...`)
and contains no internal Paperclip ticket id or instance-derived details
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [x] All Paperclip CI gates are green
- [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups
- [x] I will address all Greptile and reviewer comments before
requesting merge
2026-11-04 07:14:58 -06:00
DottaandPaperclip 84aa989bf9 Preserve native sessions through legacy workspace enrollment (#18943)
## Thinking Path

> - Paperclip is the open source app people use to manage AI agents for
work.
> - A native session retains its workspace and provider session across
turns.
> - An ephemeral web server must restore those files without its
predecessor's disk.
> - Legacy enrollment changes the workspace authority and can change
both workspace addresses.
> - The retained provider backup checks those addresses as part of its
identity.
> - This pull request preserves the exact addresses in a verified
migration receipt.
> - The benefit is that the next turn can use the original session after
enrollment.

## Linked Issues or Issue Description

Refs #18932, merged as `612d9931a6`. This pull request builds on that
all-Runner durability change. Related: #18918 fixes concurrent workspace
preservation locks. This change covers identity preservation during
offline enrollment.

## What Changed

- The native workspace migration owner records the selected session
bindings in the successful workspace migration operation.
- Runtime selection retains the original logical address only for the
exact agent, task and session.
- Remote workspace preparation restores the original provider address.
It refuses conflicting targets, forged receipts and occupied unowned
roots.
- The environment owner includes the migration operation in the reusable
lease fingerprint. Warm policy stays warm and receives a fresh
allocation through normal lease cleanup.
- Exact migration evidence permits the existing verified provider backup
to restore into that fresh warm allocation.
- Preserve verified provider allocation files through a normalized,
lease-bound digest receipt. Unknown files and altered markers remain
refused; interrupted publication is retryable.
- Retain legacy managed-instruction session fingerprints using the exact
imported content hash and recorded paths, preserving all other
configuration and credential checks.
- Migrate existing local skill archive/manifest objects through upload
claims, readback verification and receipt compare-and-swap; retain
original objects and IDs.
- Add explicit two-turn browser qualification for every released native
Daytona profile, with warm and per-turn variants. The production
maintenance entry runs offline. The old home is deleted only after a
verified export and successor readiness. The oracle checks provider
identity, native session, addresses, reference bytes, question and final
document.

## Verification

- Full repository typecheck passed at `b12ecd823e`. The production
session fix passed 198 session/credential tests. Full repository build
passed at `94bb917947`. The final Rust-only provider fix passed 57 ACPX
provider tests and the exact Linux release build.
- Workspace and transport checks passed: 117 transport/workspace tests,
six final real PostgreSQL migration boundary cases, 178 environment
tests, 539 Daytona tests (eight skips), and the native warm-backup
admission control.
- Local skill migration passed eight PostgreSQL/S3 tests (one existing
opt-in skip). Failed readback retains the source. Successful readback
still works after deletion of the old home.
- Latest Product E2E typecheck and 38 focused harness tests pass.
Earlier catalog/admission/report checks passed. Twelve unrelated
support-test failures reproduce on unchanged base `1a39dea9aa`; these
are not reported as passing.
- Live Codex per-turn at `2d5bb9a6d1` retained the native and provider
sessions, both workspace paths and exact reference bytes after deletion
of the old home. It completed the task and delivered its saved document
and original reference. Its original failure was an output-count grading
defect. The corrected grader passes all 21 checks against retained,
hashed evidence; the original result remains unchanged.
- Live OpenCode per-turn and Codex warm at harness `94bb917947` pass all
21 product checks. Their launcher cleanup failed because a read-only
diagnostic observer kept its disposable database open. The observer now
closes before ordinary database cleanup; a no-provider reproduction
confirms the fix. All owned sandboxes were independently verified
absent, child keys revoked and buckets removed. Original failed campaign
dispositions remain unchanged.
- Claude at `94bb917947` kept its sessions and reference bytes but
omitted the final clickable document link. That user-delivery failure
remains recorded. The fixture now explicitly asks for the link and
records migration evidence before checking navigation. The fresh Claude
attempt at `b12ecd823e` passed both strict migration checks: exact
provider/native session, both paths, original file bytes and
independently downloaded attachment. Its full browser workflow failed
again: it requested unnecessary confirmation, used the answer sentence
as the reference, and omitted the clickable document link. This is
retained as a failed user-workflow result, not a full pass.
- Earlier live failures exposed and reproduced the skill-object,
fresh-allocation marker and managed-instruction fingerprint bugs. The
fixes retain original identity checks. No provider session reset or
accounting bypass was used.
- The real Grok continuation at `b12ecd823e` failed before provider
execution because its immutable-instruction attach policy rejected
relocated registered file copies. A no-provider regression reproduced
the exact rejection. `b05ba3728a` selects the existing strict
authenticated asset-path policy for Grok; content digests, unknown
context fields, session/workspace identity and same-run mutations remain
enforced. The regression and all 57 ACPX provider controls pass. The
Grok browser migration now passes all 21 checks with the b05 Linux
Runner, including provider identity, exact reference bytes and final
user output; the launcher also reports successful cleanup.
- `24fabf1d81` applies the same policy to released ACPX Codex after a
second no-provider reproduction. All 58 ACPX provider controls and the
final Linux release build pass. Its live browser migration passes all 21
checks on the final binary, including exact original session/file
preservation and completed user output.
- The full native-session executor suite passes all 1,121 tests after
updating its existing lease database fixture for the migration-receipt
join. The prior CI failure was this unsupported test-double method; the
production guard still rejects ordinary unproven recovery. CI and
Greptile 5/5 passed at `ca1e0d5fe6`. The first CI attempt lost several
workers and had one rotated-recovery transport failure; its seven
descriptor cases passed locally, and the single unchanged retry passed.
The original failure remains recorded. Staging enrollment has not
started. Initial offline enrollment and subsequent rolling availability
are separate checks.

- The final review follow-up adds real runtime-selection PostgreSQL
cases for exact, different-session and absent receipts, plus
executor-level warm restoration that copies actual backup files and
verifies provider identity and the new lease stamp. Both complete
affected suites pass (1,172 tests), and full repository typecheck
passes. Removing either production migration connection independently
makes its new positive case fail; both source files were restored
byte-for-byte after these negative controls.

- Final commit `0971d373a3` passes all 63 checks (57 successes, five
expected skips, one neutral); Greptile is 5/5 and every review thread is
resolved.

## Risks

- An identity conflict blocks enrollment and keeps the original files.
It does not silently reset the session.
- A new migration generation retires a reusable lease through its
existing owner. The original sandbox must finish normal cleanup before
reuse proceeds.
- Initial enrollment has an offline step. The separate rolling suites
prove uninterrupted deploy behavior after enrollment.
- This adds no schema migration and changes no provider credentials or
accounting gate.

## Model Used

OpenAI Codex, GPT-6 family. The exact serving model build and context
window are not exposed in this session. The agent used reasoning,
terminal tools, code edits, PostgreSQL/filesystem tests and isolated
live browser qualification.

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have searched GitHub for duplicate or related PRs and linked
them above
- [x] I have either (a) linked existing issues with `Fixes: #` / `Closes
#` / `Refs #` OR (b) described the issue in-PR following the relevant
issue template
- [x] I have not referenced internal/instance-local Paperclip issues or
links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip`
URLs)
- [x] My branch name describes the change (e.g. `docs/...`, `fix/...`)
and contains no internal Paperclip ticket id or instance-derived details
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [x] All Paperclip CI gates are green
- [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups
- [x] I will address all Greptile and reviewer comments before
requesting merge

---------

Co-authored-by: Paperclip <noreply@paperclip.ing>
2026-11-04 04:43:56 -06:00
DottaandPaperclip 612d9931a6 Support per-turn Runner sessions on ephemeral web servers (#18932)
## Thinking Path

> - Paperclip is the open source app people use to manage AI agents for
work.
> - The web server controls native Runner sessions in remote sandboxes.
> - An ephemeral web server must recover without its previous local
filesystem.
> - The existing admission rule accepts warm sessions. Managed Claude,
Grok, and OpenCode sessions resolve to per-turn execution.
> - Per-turn execution also needs durable provider-session bytes after
the sandbox is retired.
> - This pull request adds encrypted backup publication and removes the
warm-only admission rule.
> - Both lifecycle modes can use the existing native ownership and
checkpoint contracts during a web deployment.

## Linked Issues or Issue Description

Refs: #18518, #18529, #18826, #18835, #18841, #18864, #18887.

**What existing behavior does this improve?**

Native Runner execution on web servers with
`PAPERCLIP_EPHEMERAL_SERVER=true`.

**Current behavior**

The admission rule requires a warm Runner lifecycle. Managed provider
credentials can resolve an agent to per-turn execution, so enabling the
ephemeral deployment profile blocks those turns. A database controller
checkpoint does not preserve provider files after the old web home and
per-turn sandbox are removed.

**Proposed behavior**

Admit native execution in either resolved lifecycle. Keep provider and
credential choices unchanged. Publish encrypted provider state to shared
storage before sandbox cleanup. Restore it from a fresh web home for the
next turn. Use the existing controller lease and generation checks for
active takeover.

**Reason and benefit**

Operators can remove the web server volume without excluding per-turn
providers or forcing managed accounts into warm sessions. New native
Daytona profiles automatically enter both rolling-deployment
qualification lanes.

**Breaking changes**

The additive migration creates a backup publication ledger. Existing
volume-backed local-disk installations retain their local backup path.
S3 installations publish encrypted backups and require a stable secrets
master key. Existing-volume enrollment must import surviving session
data before detaching the volume.

## What Changed

- Admit native Runner execution independently of its warm or per-turn
lifecycle. Keep host-owned legacy execution excluded from ephemeral
deployments.
- Store private provider state as encrypted objects. Journal uploads
before I/O, read them back, and fence publication against the current
native owner. Keep the previous published backup when storage or
ownership checks fail.
- Restore exact provider bytes into a private cache. Require an exact
durable backup before sandbox cleanup. Extend the existing bounded
retention pass to retire stored objects without adding idle polling.
- Import selected legacy controller and provider state in the existing
offline maintenance process. Preserve queued work, task pointers,
pending recovery, and original files. Prefer canonical database
checkpoints.
- Preserve already-failed legacy controllers with missing original
artifact proof as encrypted archives. These archives do not become
execution authority. Successful retained sessions still require proof.
Report archival and executable imports separately.
- Verify unmanaged Grok API keys through the existing xAI account
validator. The live test exposed a readiness gap that kept remote Grok
agents paused after platform checks. Preserve failed credentials and the
separate runtime warning.
- Ingest Grok whole-prompt usage at the owning ACP boundary. Bind the
receipt to the exact outbound request/session; reject replay, conflicts,
and incomplete authority. Separate turn cost from cumulative session
cost in the sidecar schema and Rust normalization. Preserve managed
billing identity and identify direct xAI API credentials.
- Preserve published workspace directory names across cold allocations,
including destroyed-allocation cleanup. Keep unpublished epoch/lease
directories isolated and refuse to overwrite an occupied preparation.
This fixes the cold-session identity regression exposed by #18922.
- Increase bounded checkpoint-header inspection to 1 MiB. Retain the
aggregate inspection limit.
- Register all nine native Daytona profiles in per-turn and warm
rolling-deployment suites. Delete the entire departing server home,
exercise ordinary reads and writes, require active ownership transfer,
then check a later turn on another fresh server. Permit only exact
notification replay after reconnect.

Ownership stays with the existing modules: Runner validates its protocol
state; Core validates run scope and controller ownership; storage owns
object I/O; the maintenance process owns offline conversion; the E2E
wrapper owns process replacement and probes. No provider protocol is
added to the shared admission rule. Grok receipt parsing stays in its
provider module. The shared sidecar gains an explicit cost basis because
its existing price field means session-cumulative spend, while Grok
reports prompt totals. Existing consumers retain cumulative behavior
when the new field is absent.

## Verification

- Focused native admission, archive validation, publication fencing,
cleanup, readiness, legacy import, and E2E observer tests pass. Real
PostgreSQL cases verify that queued intent and historical recovery rows
stay unchanged.
- Full typecheck and build pass on the rebased branch. The review
follow-up passes server typecheck, 29 focused
PostgreSQL/archive/readiness tests, and module-boundary checks. Revision
fb8d39a7a1 reached 55 successful CI checks and Greptile 5/5 with no
unresolved threads. The Grok follow-up passes Runner/server typechecks,
238 ACP runtime/projection/usage tests, 16 sidecar-schema tests, the
Rust cost regression, and Core billing regression. The e9aae9cf revision
passed all 57 successful checks, with 5 skips and 2 neutral checks, and
exact-head Greptile 5/5. The latest 9cbec30a4f follow-up changes only
E2E catalog/admission controls; its 291 affected tests pass, all 57
check contexts succeeded (5 skips, 2 neutral), and exact-head Greptile
is 5/5 with no open review threads.
- Migration numbering and safety checks pass.
- A local real PostgreSQL/S3 roundtrip preserved 2,870,101,591 payload
bytes across 89,100 archive entries after deleting the source directory.
Restored SHA-256 matched; upload/readback took 56.5 seconds, restore
74.8 seconds, process peak RSS was 1.40 GB, and all fixture resources
were removed.
- Archives preserve contained relative links, reject link
chains/traversal, and enforce independent byte/entry/object limits.
Offline verification streams hashes. Orphaned deleted-run backups stay
on the original volume. Obsolete object retention preserves the selected
backup, live lease references, and pending uploads with owners.
- Isolated API-key Codex deployment: original active runner/session
transferred to the replacement and committed. All 567 reads, 57 writes,
and 57 readbacks succeeded. A second replacement completed a
same-session continuation with all 287 reads and 29 writes succeeding.
The strict cell failed two agent-authored shell commands; this result is
retained as failed.
- Isolated API-key Claude deployment: original active runner/session
transferred and committed. All 584 reads, 59 writes, and 59 readbacks
succeeded. A second replacement completed a same-provider-session
continuation, with 211 reads and 22 writes succeeding. The strict cell
failed an initial completion call that omitted a registered attachment
citation; the agent corrected it. This result is retained as failed.
- Isolated API-key OpenCode deployment: the same active runner/session
transferred and committed. All 481 reads, 49 writes, and 49 readbacks
succeeded. A second replacement retained the provider session and
completed useful work, with 156 reads and 16 writes succeeding. The
strict cell failed agent tool calls: a denied external-directory write,
malformed artifact hashes, and a second completion after the first
result was committed. There was one submitted/completed turn and one
committed result; reconnect notification replay was identical. This
result is retained as failed.
- Grok's real first turn now completes with settled usage and provider
cost ($0.41397); the next turn is admitted normally. That attempt then
exposed a shared workspace-path identity regression before deployment.
Three cold-restore cases reproduced it before the fix; 106
workspace/transport tests and four focused cold-restore cases pass
afterward, including destroyed allocation and occupied-directory
preservation. Server typecheck and build pass. At b5b0dbb03f both
controller switches passed the read/write probe without failure, and the
active runner retained its process while the controller generation
advanced. The third turn exposed an invalid reasoning-token subset
check; ad07e681ba fixes it with the actual receipt regression. Two later
live attempts failed with an upstream Grok rate limit before deployment.
A tiny preflight prompt succeeded before the second attempt, but the
full workload was still rate-limited. The final live gate remains
incomplete. No accounting or identity guard was bypassed. Earlier failed
attempts and their exact resource-cleanup receipts remain recorded.
- Earlier Codex/Claude/OpenCode receipts predate #18922; they establish
their tested revisions. Current-head live qualification remains pending;
#18943 separately preserves pre-enrollment logical/provider workspace
addresses and adds actual legacy migration proof. Its first Codex
migration attempt stopped safely at skill-version verification.
- Earlier attempts remain recorded: missing local provider-pack setup
blocked one Claude launch, and the observer rejected identical reconnect
replay in another. Setup and the observer were corrected before the
latest run.
- Named staging enrollment has not started. Its serving revision and
post-deployment journeys remain separate delivery gates.

- Broader E2E harness validation exposed deployment-catalog and
installed-lane coverage drift; the affected 291 controls now pass.
Twelve other failures reproduce on unchanged base 1a39dea9aa. They
concern cleanup call expectations, dated operating-overhead fixtures, a
Pi profile-version expectation and workflow-security expectations. No
baseline failure is reported as passing.

## Risks

- Provider archives can contain credentials. Objects use authenticated
encryption with scoped associated data and a wrapped data key. The
original stable master key remains required.
- Storage failure prevents publication and sandbox cleanup. Operators
must keep shared storage available and preserve the previous volume
during enrollment.
- Legacy state without verified identity cannot become executable
recovery authority. Archival preserves evidence and existing failures;
it does not recover already-lost provider files or clear blocked tasks.
- Local overlap probes establish the tested application behavior. They
do not establish Railway routing behavior or live managed-subscription
qualification.

## Model Used

OpenAI Codex, based on GPT-6, with reasoning, tool use, code execution,
and live integration tests. The exact runtime variant and context-window
size are not exposed in this session.

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have searched GitHub for duplicate or related PRs and linked
them above
- [x] I have either (a) linked existing issues with `Fixes: #` / `Closes
#` / `Refs #` OR (b) described the issue in-PR following the relevant
issue template
- [x] I have not referenced internal/instance-local Paperclip issues or
links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip`
URLs)
- [x] My branch name describes the change (e.g. `docs/...`, `fix/...`)
and contains no internal Paperclip ticket id or instance-derived details
- [ ] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [x] All Paperclip CI gates are green
- [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups
- [x] I will address all Greptile and reviewer comments before
requesting merge

---------

Co-authored-by: Paperclip <noreply@paperclip.ing>
2026-11-04 02:12:51 -06:00
Dotta 82dd3bb702 Preserve unstarted queued turns during offline enrollment (#18887)
## Thinking Path

> - Paperclip manages AI agents and their work.
> - Existing-volume enrollment moves server files to durable object
storage.
> - Enrollment stops application deployments before it changes file
authority.
> - A task drain keeps unstarted turns queued in the database.
> - The migration rejected every queued row, so a busy instance could
never finish enrollment without discarding requests.
> - This change preserves unstarted queue intent and continues to reject
running or previously started executions.
> - Users keep their pending turns and saved files through the
conversion.

## Linked Issues or Issue Description

**What happened?**

A preserving enrollment found queued turns after task admission stopped.
The workspace, instruction-file, and historical-log guards treated these
rows as live writers. The drain also prevented the rows from starting,
so waiting could not satisfy the migration guard.

**Expected behavior**

After every old deployment has stopped, maintenance can move files while
unstarted queued turns remain unchanged. The replacement claims those
turns through normal admission. Actual executions and retained execution
ownership continue to block migration.

**Steps to reproduce**

1. Queue a turn behind another task.
2. Start a task drain and let the current task finish.
3. Stop the application deployments and run offline enrollment.
4. Observe `active_execution_requires_drain` for the unstarted queued
turn.

**Paperclip version or commit**

Reproduced on the migration contract through #18864. This branch starts
at `ab2d2098a2764c511978d1c3e7a3fc5dfcef07f4`.

Related: #18826, #18835, #18841, #18864. Searches for queued enrollment
and queued migration found no duplicate fix.

## What Changed

- Share one offline execution predicate across workspace, agent-file,
and historical-log migration.
- Reuse the existing pre-dispatch evidence predicate; queued turns with
execution markers, saved checkpoints, source events, coordinators, or
environment leases remain blockers.
- Keep task bindings and normal live-migration restrictions unchanged.
- Exercise normal replacement admission after deleting the old
filesystem: the same queued run reads restored workspace bytes and
instructions, completes its original wake, and cannot execute twice.
- Document the offline boundary and queued-turn behavior.

## Verification

- **111 tests passed** across the final 110-case migration suite and
assembled queued-turn heartbeat proof, with real PostgreSQL and local
S3. This includes workspace/log migration, queued ownership blockers,
ordinary agent-file controls, and the actual bundled maintenance
process.
- The maintenance process preserves the queued row while archiving
historical output. The new assembled heartbeat test creates a normal
wake under drain, migrates without changing either row, deletes the
original filesystem, and resumes through normal admission. It reads
saved workspace bytes and the restored instruction bundle, persists one
successful native result, completes the same wake, and verifies a second
sweep does not duplicate execution. Only sandbox transport/provider
execution are scripted; no live model or Daytona calls.
- An earlier optional run-evidence worker integration invocation was
skipped without its dedicated environment; it is outside the changed
offline path.
- Server typecheck, server build, and runtime bundle passed.
- The first maintenance test exposed the separate agent-file guard; that
guard now uses the same offline predicate and the test passes.
- Initial local typecheck attempts lacked CLI dependency links in this
isolated checkout. Restoring dependencies fixed setup without source
changes.
- Full repository checks run in CI. The first head lost spot runners in
Build and serialized tests; one unchanged idle-deadline fixture crossed
UTC midnight and failed its timestamp assertion. Final-head CI passed on
run 41744678994 after retrying a spot-runner shutdown. Greptile reviewed
the exact final head at 5/5; all inline findings are resolved. The
separate Paperclip Review app remains queued. Hosted enrollment remains
pending release qualification and compatibility verification for the
existing provider configuration.

## Risks

The offline predicate relies on Cloud stopping every old application
deployment. It does not make online migration safe. Running executions
always block. Requeued executions with retained ownership also block. No
queued request, task binding, or recovery state is removed or rewritten.
No database schema changes.

## Model Used

OpenAI Codex, GPT-6 based, with reasoning and tool-assisted code
execution. The exact deployed model identifier and context-window size
are not exposed in this session.

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have searched GitHub for duplicate or related PRs and linked
them above
- [x] I have either (a) linked existing issues with `Fixes: #` / `Closes
#` / `Refs #` OR (b) described the issue in-PR following the relevant
issue template
- [x] I have not referenced internal/instance-local Paperclip issues or
links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip`
URLs)
- [x] My branch name describes the change (e.g. `docs/...`, `fix/...`)
and contains no internal Paperclip ticket id or instance-derived details
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [x] All Paperclip CI gates are green
- [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups
- [x] I will address all Greptile and reviewer comments before
requesting merge
2026-11-03 18:33:41 -06:00
Dotta 049c1eacf5 Preserve historical native logs during ephemeral enrollment (#18864)
## Thinking Path

> - Paperclip is the open source app people use to manage AI agents for
work.
> - Ephemeral web servers need retained run history in shared storage.
> - Some old native runs have surviving local logs but no completion
digest or verifiable native source coverage.
> - Enrollment must preserve those bytes without calling them a complete
native transcript.
> - This pull request adds a read-only archive path to offline
enrollment.
> - Users can still read old output after the original server filesystem
is removed.

## Linked Issues or Issue Description

**What happened?**

Offline enrollment blocks on interrupted runs and unfinalized historical
native logs. The current importer requires canonical native-event
coverage even when the original local file survives.

**Expected behavior**

Preserve the exact surviving file in shared storage. Keep the original
run status, completion metadata, and source events. Do not allow writers
or native repair to modify archived history.

**Steps to reproduce**

Use an S3-configured instance with a terminal native run whose local log
lacks a final size or digest. Stop all app deployments and run ephemeral
maintenance. Before this change, interrupted status or unproven native
coverage prevents enrollment.

Related preservation work: #18826, #18835, #18841. This is a bounded
migration fix, not a new live logging protocol.

## What Changed

- The run-evidence migration owner can archive unfinalized native local
files during offline enrollment.
- Require the offline migration environment, zero active or queued runs
across the instance, and expired controller/finalizer leases. Check
global quiescence at each page boundary. Recheck each run's ownership
and metadata before publication.
- Verify stable local file identity and metadata, any recorded
size/digest, uploaded prefixes, and remote SHA-256.
- Store raw history in a separate `<run>.archive` journal with source
cursor zero and backend `s3_archive`. Leave completion fields and native
events unchanged.
- The existing log store reads archives but rejects begin, append,
enqueue, flush, and finalize. Native source repair does not run for
archives.
- Keep the default background importer's coverage checks. Continue to
reject incomplete mirrors and corrupt files.
- Add real PostgreSQL/S3 and packaged maintenance coverage. Correct a
pre-existing large-chunk fixture: the current verifier can prove exact
compactor output, so the negative case now uses a different canonical
source.

## Verification

- Passed on final head b96e80dbb3: 13
migration/storage/worker tests against disposable local PostgreSQL and
S3.
- Passed: 76 log-store, cancellation, object-store, native watermark,
and maintenance-service tests.
- Passed: server typecheck and server build.
- The archive journey removes original log files, reads exact saved
bytes through the normal recovery-aware reader, checks unchanged
run/source metadata, and verifies read-only behavior.
- Negative cases cover ordinary-process use, another company's running
execution, live controller/finalizer leases, an invalid recorded digest,
an incomplete mirror, and a changed local source.
- Review follow-up: move the global run-table scan from every item to
page boundaries. A real PostgreSQL trigger admits new execution during
publication; the page then fails, retains verified copies, and resumes
after quiescence. All 5 migration cases passed. After rebasing onto
merged #18841, all 13 migration/storage/worker cases and all 7 packaged
maintenance cases passed, along with server typecheck, build, and
runtime bundle.
- Preserved failure: the old large-chunk expectation failed with both
this change and the unmodified base importer. The updated fixture checks
the verifier's current compaction contract and still blocks mismatched
source output.
- Passed: all 7 real PostgreSQL/S3 enrollment cases, including the
bundled maintenance process under plain Node. Its interrupted native log
is archived, the original log directory is removed, and the saved bytes
remain readable.
- Passed: packaged runtime build and full repository CI (54 successful
checks). Four CI jobs lost their runners; a separate voice-recovery
timing assertion failed. The unchanged voice case passed locally, and
all failed/interrupted CI jobs passed on retry. Greptile reviewed the
final head at 5/5 with no unresolved threads. The separate Paperclip
Review app remains queued/paused. No live tenant migration or volume
detachment is claimed by this PR.

## Risks

- Rollback after enrollment requires a reader that supports
`s3_archive`; old binaries cannot read the new backend.
- Offline mode relies on the deployment owner stopping all old app
processes. Database and file checks are additional fences, not a
substitute for that prerequisite.
- Archives may be incomplete transcripts. The implementation preserves
that uncertainty and does not fabricate a successful run or completion
digest.
- No schema change, new background polling, or telemetry change.

## Model Used

OpenAI Codex (GPT-6 family), with reasoning, repository tool use, and
code execution. The exact serving model ID and context window are not
exposed in this session.

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have searched GitHub for duplicate or related PRs and linked
them above
- [x] I have either (a) linked existing issues with `Fixes: #` / `Closes
#` / `Refs #` OR (b) described the issue in-PR following the relevant
issue template
- [x] I have not referenced internal/instance-local Paperclip issues or
links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip`
URLs)
- [x] My branch name describes the change (e.g. `docs/...`, `fix/...`)
and contains no internal Paperclip ticket id or instance-derived details
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [x] All Paperclip CI gates are green
- [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups
- [x] I will address all Greptile and reviewer comments before
requesting merge
2026-11-03 16:52:30 -06:00
DottaandPaperclip 2a16dcf629 fix(workspaces): preserve shared directory trees during enrollment (#18835)
## Thinking Path

> - Paperclip is the open source app people use to manage AI agents for
work.
> - A volume-free web server needs existing task files in durable object
storage.
> - Historical workspace records can share a physical folder or contain
other task folders.
> - A task-level migration hold cannot fence every alias, and capturing
a parent recursively duplicates nested task data.
> - Offline enrollment imports children first and verifies their durable
coverage before omitting them from a parent archive.
> - Snapshot retention preserves those child versions for as long as a
covering parent depends on them.
> - Existing files, task bindings, and archived states remain intact
through the storage migration.

## Linked Issues or Issue Description

Builds on merged #18826.

**What happened?**

The per-workspace importer could capture a shared project folder while
another workspace record still owned the same path. It also recursively
included runtime-created nested task workspaces in each parent import.
Packaged enrollment rejected existing workspace data instead of invoking
its migration owner.

**Expected behavior**

Require offline maintenance for overlapping paths. Import nested tasks
before their parents, verify every excluded directory against its saved
snapshot, preserve dependencies through retention, and resume
interrupted imports without replacing existing remote authority.

**Steps to reproduce**

Create a project workspace and another task workspace below its
`.paperclip/worktrees/` directory. Try importing either while ordinary
writers are running, then run offline enrollment. Interrupt a parent
import after upload and resume it.

## What Changed

- Add physical-overlap admission checks and an offline entry-point
guard, including global running and queued executions.
- Import pending records in leaf-first pages through the existing
migration owner.
- Verify nested snapshots by downloading, restoring, and comparing the
original source before and after parent upload; check transitive
dependencies.
- Publish parent dependency receipts under child snapshot row locks.
Retention pins those children and revisits them when the parent is
deleted.
- Index imported-child dependency lookups with a partial GIN index; a
PostgreSQL query-plan regression covers 2,500 unrelated snapshots.
- Propagate cancellation through capture and object storage operations
and preserve existing retry journals.
- Wire workspace migration into packaged maintenance and document its
preservation contract.

## Verification

- The original overlap and duplicate-parent regressions failed before
implementation.
- 73 migration and retention tests pass against real PostgreSQL and
files, including interrupted uploads, resumed batches, equal-path
aliases, changed or missing child data, nested descendants, and active
or queued executions.
- Six S3-compatible storage integration tests pass, including migration
through the maintenance owner and restoration of both parent and child
after deleting the original filesystem.
- The standalone process case was initially skipped because the worktree
had no bundle. After rebuilding the server and runtime bundle, that test
passed against PostgreSQL and S3: authenticated ready/export receipts,
preserved decision secret, blocked application routes, and clean SIGTERM
shutdown.
- Server typecheck, server build, runtime bundle build, and
module-boundary checks passed. Full repository CI passed on
97136a20b9 after targeted retries of
infrastructure-interrupted jobs.
- Review fixes resolve physical paths through symlinked ancestors and
persist each parent journal’s original capture scope, including
pre-change journals. All three new regressions failed before their
fixes. An initial abort/retry test exposed JSON object-key ordering in
the saved scope; deep equality fixes that case, and the full migration
suite passed.
- Three new fixtures initially omitted required workspace fields; one
also omitted its task binding. The fixtures now satisfy the existing
contract; production validation was not relaxed.
- The parent PR's full local suite stopped on a chat retry-notice
timeout and a following fake-timer failure. All four relevant cases
passed separately without source changes; this is not a claim that the
full local suite passed.
- No staging enrollment or live rolling-deploy result is claimed by this
PR.

## Risks

The offline flag is an internal maintenance contract: Cloud must
actually stop every predecessor deployment before starting the process.
Deep or large trees require additional object downloads and source
comparisons and may exceed one maintenance window; import journals
support retry. Dependency lookups are company-scoped and event-driven,
with no added idle polling. Unavailable archived sources and unresolved
recovery/copyback still block migration and require separate owner work.
Unsupported local providers and cleanup_failed workspaces deliberately
remain enrollment blockers: filtering them from both the batch and
eligibility would abandon local files when the volume is detached. Two
regression tests prove that rejected records keep their files and do not
acquire remote authority. Original folders and the original volume
remain retained. The additional review request to ignore parallel-write
policy, stale task ownership, or a missing task binding in offline mode
is intentionally not applied: stopping deployments does not establish
those semantics. #18841 documents the separate owner actions and adds
three offline regressions preserving their files and blocking detach.
The batch reports the first failed workspace and supports journaled
retry; it does not promise aggregate diagnostics.

## Model Used

OpenAI GPT-6 through Codex, with reasoning, repository tools, and code
execution. This session does not expose a more specific serving model ID
or context-window size.

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used with available version and
capability details
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have searched GitHub for duplicate or related PRs and linked
them above
- [x] I have described the issue in-PR using the bug template
- [x] I have not referenced internal or instance-local issues or links
- [x] My branch name describes the change and contains no internal task
ID
- [x] I have run the focused tests locally and they pass
- [x] I have added tests for the changed behavior
- [x] I have updated relevant documentation
- [x] I have considered and documented risks
- [x] All Paperclip CI gates are green
- [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups
- [x] I will address reviewer findings before merge

---------

Co-authored-by: Paperclip <noreply@paperclip.ing>
2026-11-03 14:50:14 -06:00
DottaandPaperclip d941ed3879 feat(server): verify existing-volume ephemeral enrollment (#18529)
## Thinking Path

> - Paperclip is the open source app people use to manage AI agents for
work.
> - Cloud web servers can now keep durable state in PostgreSQL and S3.
> - Existing servers still have files and a decision signing key on
their volume.
> - The volume must stay attached until every data owner verifies its
migration.
> - This pull request adds a dedicated maintenance process for that
transition.
> - Cloud can preserve the original key and remove the volume only after
a matching receipt.

## Linked Issues or Issue Description

Refs #18518 and #18526. Existing-volume enrollment is a required step in
the zero-downtime web deployment work. This is the Core maintenance
side; the Cloud transition is a separate private change.

## What Changed

- Package a standalone maintenance entry that starts no normal app
routes or execution workers.
- Coordinate the existing agent-file, run-evidence and skill migration
owners. Follow every page and verify shared bytes before final
eligibility.
- Require stopped writers. Refuse active execution, missing local bytes,
local workspaces and external instructions.
- Read the existing decision key without generating a replacement.
Preserve normal key creation for ordinary server startup.
- Require an attempt token for status and export. Export the original
key only after successful migration. Keep status and errors free of
secret material.
- Document the Cloud ownership boundary, deadline, retry and retention
requirements.

## Verification

- Full workspace typecheck and build passed before the review fixes. The
final server TypeScript compilation passed after correcting Drizzle's
optional predicate type.
- Production runtime bundling passed: 2,702 inputs, 122 chunks,
including the maintenance executable.
- The focused suite passed 21 cases using PostgreSQL and real
S3-compatible storage. It covers multi-page migration of 26 agents,
exact reads after deleting the predecessor home, corrupt-object
rejection, active/missing-data refusal, and the bundled plain-Node
process with authenticated export and clean SIGTERM exit.
- Regression cases refuse unsaved terminal working copies, require
explicit stopped/cleaned receipts for unavailable copies, clean 101
expired traces through the owning service, and enforce the deadline
after migration succeeds.
- Initial integration attempts exposed fixture cleanup ordering
problems; corrected runs pass. CI also caught a Drizzle predicate type
error, now fixed and compiled locally.
- All repository CI gates passed on a4db955403, including typecheck,
build, browser suites and serialized tests. Greptile reviewed that head
at 5/5; all four review threads are resolved. Hosted enrollment and
active-agent continuity remain separate acceptance work.

## Risks

- This is an explicit maintenance entry. The caller must confirm all
prior deployments stopped and keep normal tenant routing closed through
detachment.
- A timeout blocks export but an owner may finish its current bounded
operation before observing cancellation. Cloud must confirm process exit
before detaching. SIGTERM has a ten-second hard exit deadline.
- The authenticated export contains the original signing key. The Cloud
caller must put it only in the stack vault and must not log the body.
- Local-workspace and external-instruction migrations remain their
existing owners' responsibility. Enrollment fails closed until those
data are eligible.
- No database schema changes. Ordinary server startup is unchanged
unless this maintenance entry is explicitly launched.

## Model Used

OpenAI Codex, GPT-6. Tool use, code execution and repository review. The
runtime does not expose a more specific model ID or context-window size.

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have searched GitHub for duplicate or related PRs and linked
them above
- [x] I have either (a) linked existing issues with `Fixes: #` / `Closes
#` / `Refs #` OR (b) described the issue in-PR following the relevant
issue template
- [x] I have not referenced internal/instance-local Paperclip issues or
links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip`
URLs)
- [x] My branch name describes the change (e.g. `docs/...`, `fix/...`)
and contains no internal Paperclip ticket id or instance-derived details
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [x] All Paperclip CI gates are green
- [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups
- [x] I will address all Greptile and reviewer comments before
requesting merge

---------

Co-authored-by: Paperclip <noreply@paperclip.ing>
2026-11-01 03:56:44 -06:00
DottaandPaperclip 006d5691a6 feat(server): support volume-free web server handoff (#18518)
## Thinking Path

> - Paperclip is the open source app people use to manage AI agents for
work.
> - Its web server also owns controller admission and user commands.
> - A rolling deployment starts a replacement before the old server
exits.
> - Shared database state alone does not preserve local agent files,
browser chunks, or in-process commands.
> - This pull request adds an opt-in ephemeral server contract and a
local overlap test.
> - The benefit is a web server that can relinquish traffic and local
files without losing acknowledged work.

## Linked Issues or Issue Description

Refs #18403, #18327, #18335, #18341.

**Current behavior**

The control-plane web server still has local agent-file authority and
local command targets. A new container can miss saved bytes or send a
command to the wrong process. An existing browser tab also needs chunks
from its original build.

**Proposed behavior**

Eligible servers share only PostgreSQL, object storage and stable
secrets. A replacement waits for readiness. The old server drains
admitted requests, keeps owner commands available through handoff, and
releases controller leases. Explicit maintenance adopts existing files
before the volume is removed.

**Reason and benefit**

This is the application prerequisite for rolling app-only deployments.
Schema migrations and permanent multi-replica operation are outside this
change.

## What Changed

- Store agent-file manifests in PostgreSQL and immutable bytes in S3.
Treat local roots as disposable projections. Preserve existing
permission checks and edit conflicts.
- Add an explicit migration, eligibility and object-retention command to
the production runtime bundle.
- Add `/api/ready`, admitted-request drain, browser restart signaling
and retained immutable UI chunks.
- Carry transaction-aware work hints across controllers during handoff
and active execution. Keep listeners closed when idle.
- Deliver durable Stop and runtime responses to the execution owner.
Recheck request lifecycle and access before response dispatch.
- Reject local-only configuration in ephemeral mode. Keep the feature
disabled for existing installations by default.
- Add an isolated PostgreSQL/S3/proxy/browser deployment harness with
independent server homes and retained failure evidence.

## Verification

- All CI checks pass on `ce17b95019d3cf1cabd357d19b6d37f96782cc5c`:
workspace typecheck, build, Runner checks, server/general tests and
browser shards. Greptile reviewed the runtime changes at 5/5 with all
findings resolved; the final commit updates maps and the plan.
- Local targeted checks passed: coordinator 27; Stop/recovery 33;
PostgreSQL command delivery 6; route/workspace regressions 8; bootstrap
Stop 1; restart recovery 75. PostgreSQL command tests simulate the
provider edge.
- Local browser proof passed 91 reads and 19 saves; reconnect took
1,013ms. The tab opened Audit from S3 after deletion of A's whole
home/build. This uses compiled workspace code and local-trusted auth,
not released containers or live agents.
- Local workspace typecheck/build passed; current server and runtime
bundle passed. The earlier broad local suite was stopped after three
hours and is not a passing receipt. Its retained failures and isolated
reruns are documented in the plan.
- Stacked #18526 adds stricter graceful-exit proof, an unready
replacement control, live Runner qualification and a Stop handoff
correction. Hosted enablement remains gated on those results and Cloud
#1096. No hosted stack has been enabled.

## Risks

- Apply migration 0422 before enabling the feature. Existing data must
pass each owner's migration and eligibility checks. Do not discard a
volume based on a single migration page.
- Durable manifests remain authoritative after the opt-in is disabled.
Rolling back to a binary that ignores them is unsupported.
- Cold directory restoration and complete shutdown timing still need
qualification before enabling a hosted stack.
- Retained UI assets must cover the supported browser and rollback
window. Cleanup is explicit; no new idle maintenance polling is
introduced.
- This change does not claim production zero downtime or authorize a
fleet-wide enablement.

## Model Used

OpenAI Codex, GPT-6 family. The exact serving model ID and
context-window limit are not exposed in this session. Used reasoning,
code editing, shell execution and browser automation.

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have searched GitHub for duplicate or related PRs and linked
them above
- [x] I have either (a) linked existing issues with `Fixes: #` / `Closes
#` / `Refs #` OR (b) described the issue in-PR following the relevant
issue template
- [x] I have not referenced internal/instance-local Paperclip issues or
links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip`
URLs)
- [x] My branch name describes the change (e.g. `docs/...`, `fix/...`)
and contains no internal Paperclip ticket id or instance-derived details
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [x] All Paperclip CI gates are green
- [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups
- [x] I will address all Greptile and reviewer comments before
requesting merge

---------

Co-authored-by: Paperclip <noreply@paperclip.ing>
2026-11-01 01:58:54 -06:00