Commit Graph
3360 Commits
Author SHA1 Message Date
DottaandClaude Opus 5.5 785ead5c7a fix(tasks): hold a Retry while the task's own native session close is retained (#19609)
## Thinking Path

> - Paperclip is the open source app people use to manage AI agents for
work
> - When a native provider session close fails, the runner keeps a
cleanup owner or quarantine in process memory. Its admission gate
refuses new sessions for that task (scoped to the task since #19532)
> - The server could not see that state. A task's Retry was accepted
(202), its run was dispatched, and the runner refused it at once with
`native_session_cleanup_quarantined: prior session cleanup remains
incomplete`
> - The user saw a Retry that failed instantly, and nothing said what to
do
> - This pull request lets the server read the runner's per-task cleanup
gate and hold the Retry with a clear reason. The Retry starts
automatically when the close is released
> - The benefit is that a Retry is never dispatched only to fail on a
block that is already known

## Linked Issues or Issue Description

**What happened?**
After two hard restarts, a Codex run's close stayed incomplete. The
board Retry for that task was accepted, and its run failed in about 1 s
with `native_session_cleanup_quarantined: prior session cleanup remains
incomplete`. The next Retry did the same.

**Steps to reproduce**
1. Let a native session close fail or stay pending for a task.
2. Press Retry on that task.

**Expected behavior**
The Retry waits with a clear reason, and starts when the cleanup
finishes. If the cleanup needs an operator, Retry is not offered and the
one working action is shown.

**Actual behavior**
The Retry is accepted and its run fails at once.

## What Changed

- `native-session-runtime.ts`:
- New `nativeSessionCleanupBlock({ companyId, issueId })`. It is a
read-only view of the in-process admission gate for one task: `pending`
(a retained close or a bounded automatic close recovery still owns the
task's provider resources), `operator_required`, or `null`. It grants no
authority.
- New `onNativeSessionCleanupSettled(listener)`. It is called whenever a
cleanup owner or quarantine entry is released.
- `explicit-native-continuation.ts` (the continuation gate for a Retry
or a new message):
- `pending`: the input is held with `local_cleanup` ("Retry is waiting
for the previous execution to finish cleanup. Your message is saved.").
It starts automatically when the close is released.
- `operator_required`: handled exactly like a recorded
`native_session_cleanup_quarantined` run. Retry is not offered. A new
message runs the existing stopped-process proof
(`verifyStoppedNativeSessionForContinuation`), which retires the runner
quarantine when the old processes are proven stopped.
- `native-cleanup-release-wake.ts` (registered in
`server/src/index.ts`): each cleanup release wakes deferred execution
for the company in a transaction, so a held Retry re-evaluates.
- `server/src/vendor/paperclip-runner/index.ts`: exports the two runtime
functions.

## Verification

- Red before the gate (server change stashed): `pnpm --filter
@paperclipai/server exec vitest run
src/services/quarantined-task-retry.test.ts -t "holds a Retry"`
dispatched a successor run while the task's close was retained
(`expected [ { … } ] to have a length of +0 but got 1`).
- Green after the gate:
- The Retry is held (`deferred_issue_execution`, `executionWait.reason =
local_cleanup`), and no successor is dispatched.
  - A different task is not blocked.
- When the close settles, the release is announced, and the next pass
dispatches exactly one successor.
- The whole `quarantined-task-retry.test.ts` file passes (28 tests).
`src/native-session-runtime.test.ts` passes. Server `tsc --noEmit`
passes after the runner package build.
- Live chaos replays: results are added in a comment.

## Risks

- The gate reads process memory, so it applies only where the server and
the runner session share a process (local runner). Other deployments
keep today's behavior.
- A held Retry re-evaluates on the release wake (sent in its own
transaction) or on the existing 30 s deferred-execution pass. When the
bounded automatic close budget is spent with nothing else scheduled, the
view reports `operator_required`. Retry is then no longer offered, and a
new message reaches the stopped-process recovery instead of waiting
forever.
- No schema or API shape changes.

## Model Used

- Claude Opus 5.5 (`claude-opus-5-5`), Anthropic, with tool use and code
execution in Claude Code.

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have searched GitHub for duplicate or related PRs and linked
them above
- [x] I have either (a) linked existing issues with `Fixes: #` / `Closes
#` / `Refs #` OR (b) described the issue in-PR following the relevant
issue template
- [x] I have not referenced internal/instance-local Paperclip issues or
links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip`
URLs)
- [x] My branch name describes the change (e.g. `docs/...`, `fix/...`)
and contains no internal Paperclip ticket id or instance-derived details
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [ ] All Paperclip CI gates are green
- [ ] Greptile is 5/5 with no open P2s, recommendations, or follow-ups
- [x] I will address all Greptile and reviewer comments before
requesting merge

Refs #19532.

🤖 Generated with [Claude Code](https://claude.com/claude-code)

---------

Co-authored-by: Claude Opus 5.5 <noreply@anthropic.com>
2026-11-06 18:52:46 -06:00
DottaandClaude Opus 5.5 29e05f7e06 fix(heartbeat): sweep orphaned run scratch directories (#19671)
## Thinking Path

> - Paperclip is the open source app people use to manage AI agents for
work
> - Each heartbeat run gets a scratch directory in the system temp
folder
> - Each process attempt makes a new directory with a marker file
> - Cleanup removes only the directory of the current attempt
> - A restart kills the old attempt, so its directory stays forever
> - One restart storm left 83 directories across 78 runs
> - This pull request sweeps those directories when the run ends and at
startup recovery
> - The benefit is that temp space no longer fills with leftover
directories

## Linked Issues or Issue Description

**What happened?**

Run scratch directories made before a restart are never removed. A
restart storm left 83 `paperclip-run-*` directories across 78 runs. Each
holds only `.paperclip-run-scratch.json`.

**Steps to reproduce**

1. Start a run that makes a scratch directory.
2. Kill the server process and start it again.
3. Let the run finish.
4. List `$TMPDIR/paperclip-run-*`. The old directory is still there.

**Expected behavior**

The old directory is removed after the run ends, or at startup.

## What Changed

- Add `sweepOrphanedRunScratch` in `server/src/services/run-scratch.ts`.
- The sweep removes a directory only if it has a valid regular-file
marker and its run is terminal in this instance database. It keeps a
directory whose run it cannot see, because another instance can share
the temp root.
- The sweep keeps active runs, unmarked directories, symlinks, and
directories outside `paperclip-run-*`.
- The sweep checks each directory again before removal and bounds the
scan (500, with a rotating start so kept entries do not starve later
ones) and removals (100). A per-run sweep filters by directory name
first. Marker run ids that are not UUIDs never reach the database query.
- Call the sweep after the current attempt's cleanup in `heartbeat.ts`,
for that run only.
- Call the sweep in `reapOrphanedRuns` (startup recovery) with run
status from the database.

## Verification

- `pnpm --filter @paperclipai/server exec vitest run
src/services/run-scratch.test.ts`
- New tests cover: leftover directories of a terminal run are removed,
an active run is kept, an unmarked directory is kept, a symlink is not
followed, and removals are bounded.

## Risks

- Low risk. The sweep acts only on marked directories of terminal runs.
- A directory left by a previous attempt could hold a live grandchild
process. The sweep does not check old process groups. The run is already
terminal.

## Model Used

- Claude, claude-opus-4-5 class model via Claude Code, with tool use and
code execution.

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have searched GitHub for duplicate or related PRs and linked
them above
- [x] I have either (a) linked existing issues with `Fixes: #` / `Closes
#` / `Refs #` OR (b) described the issue in-PR following the relevant
issue template
- [x] I have not referenced internal/instance-local Paperclip issues or
links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip`
URLs)
- [x] My branch name describes the change (e.g. `docs/...`, `fix/...`)
and contains no internal Paperclip ticket id or instance-derived details
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [ ] All Paperclip CI gates are green
- [ ] Greptile is 5/5 with no open P2s, recommendations, or follow-ups
- [x] I will address all Greptile and reviewer comments before
requesting merge

🤖 Generated with [Claude Code](https://claude.com/claude-code)

---------

Co-authored-by: Claude Opus 5.5 <noreply@anthropic.com>
2026-11-06 18:51:31 -06:00
Nicky LeachandClaude Opus 5.5 0b73c805e8 feat(environments): fill an unset instance default with a managed plugin environment (#19551)
## Thinking Path

> - Paperclip is the open source app people use to manage AI agents for
work
> - A managed instance gets its instance-level environments from the
`PAPERCLIP_MANAGED_CONFIG` document, which can declare plugin
environments next to the managed sandbox
> - A platform that runs managed instances wants a new instance to start
with one of those plugin environments as its default, without changing
the default of any instance that already has one
> - #19632 made boot fill the instance default only when it is unset,
local or deleted, in one locked transaction, and removed the revert, so
every existing managed instance keeps a set default
> - This pull request adds an `instanceDefault` flag to a plugin entry.
That entry fills an unset default through the same locked fill, before
the managed sandbox does
> - The fill follows the same readiness rule as an admin's default
write, so it never moves ready agents onto a plugin that has not
prepared them
> - The platform also needs a way to know whether a release understands
plugin entries, so the release now ships a small capabilities file
> - The benefit: new instances get the plugin environment as their
default, and existing instances and admin choices are never changed

## Linked Issues or Issue Description

Refs #19632 (the locked fill-if-unset rule this builds on), #19508
(plugin entries in the managed config)

**Subsystem affected**
Server environments: the managed config parser and the managed
environment bootstrap.

**Problem or motivation**
The managed config can declare plugin environments, but it can't make
one the instance default on a new instance. An external platform also
has no way to tell whether a given release supports plugin entries
before it sends one.

**Proposed solution**
- Add `instanceDefault: true` to at most one plugin entry. Right after
that entry's boot ensure succeeds, it fills the instance default through
`fillUnsetInstanceDefault`. The managed sandbox fill runs after it.
- On a new instance the plugin environment wins. On an existing instance
the default is already set, so neither fill changes it.
- The fill declines while an active agent that follows the default
hasn't been prepared by that plugin. This is the rule the
instance-settings route enforces. When the plugin fill declines, the
managed sandbox fills as usual.
- Ship `server/src/services/managed-config-capabilities.json`, which
lists `pluginEnvironments`.

**Alternatives considered**
- A recorded one-time decision with a retry worker. It needed pending
states and extra checks for many writer and trigger combinations.
Filling only an unset default, under the existing lock, needs none of
that.
- Rejecting the fill whenever agents exist. That is stricter than the
admin route and blocks harmless cases, such as agents that are paused or
already prepared.

**Roadmap alignment**
This extends existing managed-environment behaviour. It adds no UI.

## What Changed

- `server/src/services/managed-config.ts`:
- `ManagedPluginEnvironmentSpec.instanceDefault` (boolean, default
`false`).
- The parser refuses `instanceDefault` on more than one plugin entry, on
the sandbox entry (even `false`), or as a non-boolean.
- `MANAGED_CONFIG_CAPABILITIES` and
`MANAGED_CONFIG_CAPABILITIES_SCHEMA_VERSION` constants. A plugin entry
is refused unless `pluginEnvironments` is listed.
- `server/src/services/managed-config-capabilities.json`: `{
"schemaVersion": 1, "capabilities": ["pluginEnvironments"] }`. A test
pins it to the constants and to this literal contract.
- `server/src/services/managed-environments.ts`:
- New `fillPluginInstanceDefault`. It runs right after a successful boot
ensure of the flagged entry and logs a fill or a decline. Recovery after
boot never fills.
  - The managed sandbox fill now runs once, after the plugin entries.
- `server/src/services/managed-instance-default.ts`:
`fillUnsetInstanceDefault` runs `agentsNeedSetupForEnvironmentChange`
inside its locked transaction and returns `declined:
"agents_need_setup"`. A sandbox target never needs agent setup, so the
managed sandbox fill behaves as before.
- `server/src/services/plugin-environment-driver.ts`: the readiness
query is factored into `agentsNeedSetupForEnvironmentChange`.
`assertAgentsReadyForEnvironmentChange` wraps it and still throws the
same conflict.
- `doc/DEVELOPING.md`: documents `instanceDefault`, the fill order, the
readiness decline, and the capabilities file.

## Verification

- `cd server && npx vitest run
src/__tests__/managed-plugin-environments.test.ts` (embedded Postgres),
under `instanceDefault (fill only an unset default)`:
  - A new instance gets the plugin row as its default.
  - An existing sandbox default is kept, and so is an admin's choice.
- If the plugin was down at the first boot and the sandbox filled, a
later recovery and boot keep the sandbox default.
- An admin-cleared or local default is declined while a ready or
verifying agent follows the default without the plugin's setup. The
managed sandbox then fills it.
- It fills when the agents that follow the default are paused or already
prepared, or are pinned to another environment.
  - Without the flag, nothing happens.
- A new agent that follows the default gets the plugin in
`requiredPluginIds`.
- `npx vitest run src/__tests__/managed-instance-default.test.ts`
(embedded Postgres): the earlier fill, lock and overlap cases pass. A
sandbox fill also succeeds while active agents follow the default.
- `npx vitest run
src/services/managed-environments-plugin-entries.test.ts`:
  - The fill order is plugin then sandbox.
  - When the plugin is down there is no fill, and recovery never fills.
- A failed ensure gives only the sandbox fill, and a failed fill keeps
the ensure counted.
  - When the plugin fill declines, the sandbox still fills.
- `npx vitest run src/__tests__/managed-config.test.ts
src/services/managed-config-capabilities.test.ts`: parser refusals and
the capabilities contract.
- `npx vitest run src/services/managed-environments.test.ts
src/__tests__/instance-settings-routes.test.ts
src/__tests__/environment-routes.test.ts`: pass. The route still throws
the same readiness conflict.
- `pnpm --filter @paperclipai/server typecheck` passes.
- I did not run the full `pnpm test:run`, `pnpm -r typecheck` or `pnpm
build`. CI covers them.

## Risks

- An instance whose default is unset at the first boot after this
release gets the plugin environment, if its agents are ready for it.
That covers a new instance, and an instance whose admin cleared the
default or chose the local environment. This is the intended behaviour.
- The readiness check doesn't lock agent rows. If an agent becomes ready
during the boot fill, it can miss the check, which is the same race the
admin route has. Agents created after the fill are prepared for the
plugin, because setup reads the current default.
- If the plugin is down at a new instance's first boot, the instance
keeps the managed sandbox default from then on.
- No schema change.

> For core feature work, check [`ROADMAP.md`](ROADMAP.md) first and
discuss it in `#dev` before opening the PR. Feature PRs that overlap
with planned core work may need to be redirected — check the roadmap
first. See `CONTRIBUTING.md`.

## Model Used

- Claude Opus 5.5 (`claude-opus-5-5`), Anthropic, through Claude Code
with tool use (file edits, shell, test runs).

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have searched GitHub for duplicate or related PRs and linked
them above
- [x] I have either (a) linked existing issues with `Fixes: #` / `Closes
#` / `Refs #` OR (b) described the issue in-PR following the relevant
issue template
- [x] I have not referenced internal/instance-local Paperclip issues or
links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip`
URLs)
- [x] My branch name describes the change (e.g. `docs/...`, `fix/...`)
and contains no internal Paperclip ticket id or instance-derived details
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [x] All Paperclip CI gates are green
- [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups
- [x] I will address all Greptile and reviewer comments before
requesting merge

🤖 Generated with [Claude Code](https://claude.com/claude-code)

---------

Co-authored-by: Claude Opus 5.5 <noreply@anthropic.com>
2026-11-06 16:48:13 -08:00
DottaandPaperclip 7ac99718a4 fix(workspaces): fence legacy sources for online migration (#19642)
## Thinking Path

> - Paperclip coordinates AI agents and preserves their saved work.
> - Remote workspace storage replaces legacy host directories with
durable snapshots.
> - Several legacy workspace records can name one physical project
directory.
> - A task lock alone cannot exclude a new task that selects that
directory.
> - Terminal recovery records can retain valid sources after physical
writers settle.
> - This change fences the source through its real preparation and
lifecycle owners.
> - Idle ordinary sources can then migrate while unrelated remote work
continues.

## Linked Issues or Issue Description

**What happened?**

Online migration rejects ordinary legacy directories when several
workspace records name the same path. A source inspection found 45
aliases across three project roots with no root Git marker or previously
imported nested child. The instance also had unrelated running remote
work. Requiring the whole instance to drain prevented useful migration
of these idle sources.

Terminal native sources and superseded finalization attempts also remain
blocked after their exact physical and durable owners settle. Their
files, provider allocations and recovery records must remain available
through the change of file authority.

**Expected behavior**

Migrate an idle ordinary source under a derived physical source fence.
Let unrelated object-backed turns continue. Preserve provider and
recovery obligations. Keep unknown writers, shared Git stores and
uncertain source state blocked.

**Steps to reproduce**

1. Create several local workspace records for one managed project
directory.
2. Give the aliases different source tasks. Leave their local writers
idle.
3. Keep a valid remote workspace turn running on another source.
4. Inspect or apply migration to an alias. The old owner returns
`overlapping_workspace_requires_maintenance`.
5. Retain a terminal native prepared source with a null coordinator
owner, or an old finalize attempt with an exact later committed receipt.
The old online path keeps these sources blocked.

**Paperclip version or commit**

Current tested head: `7478c817f09f7eed396922c0f7831af07ae6ff14`, based
on master `8621bcf53ee2e4bbefb7d193add42dd544ca06e8`. Related recovery
work: #19131.

**Deployment mode**

Hosted native Runner with remote workspace storage. Qualification uses
disposable local PostgreSQL databases, actual archive/storage owners and
synthetic source trees. The source observations were read-only.

## What Changed

- Retain the existing company/task source keys and add one physical
managed-project key. Heartbeat source selection, materialization, reopen
and lifecycle owners share it. Configured aliases of canonical task
directories retain their original task key.
- Fence runtime provision and each configured service CWD through both
startup owners. Check all unsettled service CWDs for physical source
overlap, even when workspace IDs differ. Runs with no services keep
their filesystem-free path.
- Derive a bounded ordinary alias closure. Lock every alias task and
lifecycle key. Reject foreign companies, changed membership, unproven
descendants, included Git metadata and other unresolved writer
obligations.
- Commit remote authority on the connection that holds source exclusion.
Refresh a stale selected local workspace after admission if migration
published remote authority. Publish activity after commit.
- Admit exact terminal native recovery sources under the existing
physical finalizer keys. Bind descriptors, allocations and owner
checkpoints to journaled fingerprints. Recheck them before capture and
publication.
- Add a separate company-scoped online entry for exact superseded
finalization receipts. Keep the offline entry's deployment prerequisites
and keep inventory read-only.
- Document the proof and the remaining Git/common-store extension. The
original files stay in place. No new scheduler, deployment action or
database migration is added.

## Verification

- Review found that the real reopen path could hold lifecycle exclusion
while waiting for a project source. The new actual nested-reopen
regression failed before the repair: lifecycle lock count was 1 while
another connection held the project fence. The repair acquires declared
and physical project sources before reconstruction and lifecycle. The
contention case, ordinary-fetch restore and runtime nested restore
passed. The lifecycle-worker restore first completed in 16.64 seconds
but exceeded its unchanged 15-second body limit; a bounded warm rerun
passed at that same limit. Both wrappers exited and completed cleanup.
The source type graph, module-boundary check and diff check pass. Final
7478 CI passed: 58 successful jobs, three skipped, one neutral and a
successful Snyk context. Fresh Greptile is 5/5 for exact7478, with no
unresolved threads. [Final
CI](https://github.com/paperclipai/paperclip/actions/runs/42318150314/job/128240631573).

- Full CI on `e4283b3452` passed the other server, build and type
checks. One exposure owner case failed: two execution workspaces
received one preview pair after source admission serialized their
starts. The first local seven-case run reproduced that failure; adding
the owner argument alone did not change the hash payload. The completed
repair binds run-scoped reuse to its execution-workspace owner. All
seven existing real-process/fake-broker cases then passed in 13.81
seconds, with wrapper exit 0 and cleanup complete. Public scope IDs and
explicit project/agent sharing are unchanged. The final7478 head passed
all required CI and fresh review gates.

- The service/source/restore owner canary passed 25 cases across four
suites before the final no-service fast-path guard (41.33 seconds). This
includes actual project service processes with a different project ID
and no execution-workspace ID. Their startup waits for source ownership,
migration stays blocked while they run, and the source becomes eligible
after their verified stop. The final three-case runtime canary passed at
the final source inputs (18.70 seconds). It covers that fast path and
both service-CWD variants. Both wrappers exited 0 and completed cleanup.
- The boundary-repair canary passed 9 cases across four suites at
`7c18f1c170`. It covers the real rehome/conversion gateway, project
command provisioning, future task selection, stale imported authority,
foreign-company binding, and existing standalone filesystem callers. The
shared PostgreSQL wrapper exited 0 and completed cleanup. Duration:
94.15 seconds.
- The P1 diagnostic passed 46 cases across five suites at the pre-rebase
P1 revision. It covers the actual importer with an export warning
created by `recordNativeFinalizationFailure`, strict
prepared-source/action bindings, finalizer locks, source/lifecycle
races, unrelated remote execution, and bare Git with external
alternates. It uses the repository shared PostgreSQL wrapper,
`--fsModuleCache`, and a local-only 90-second hook allowance. Duration:
245.44 seconds. No product timeout changed.
- The canonical retained-directory compatibility check passed 22 cases
across two suites. Missing archived task directories still import from
authenticated restore points; they do not need a present-directory
source proof.
- Both initial P1 regressions were observed before the fix. The real
finalizer warning made the importer ineligible. The old archive owner
accepted a nested bare repository borrowing external objects. The new
cases pass and preserve the original warning, prepared descriptor,
allocations and files.
- Prior attempts remain non-passes: the first 23-case canary passed on
an earlier head; its exact-head rerun hit 30-second database
setup/cleanup limits. A read of the owned PostgreSQL server found a
template clone waiting on `DataFileExtend` for 58 seconds. A broader
owner run was intentionally interrupted during slow existing heartbeat
setup. One diagnostic invocation used an invalid CLI option and executed
no tests. A later review canary passed 21 cases and failed the new real
restore contention case: cwd-only admission missed the declared project
of an external worktree. Its fixture also omitted the required
file-repository authorization callback and produced an unhandled
rejection after the failed assertion. The repaired run passed 22 cases,
exited 0 and completed cleanup. These earlier failures are not reported
as passes.
- The recovery owner passed 37 PostgreSQL cases, including 14 new and 23
existing finalized-recovery cases. The operation reconciliation owner
passed 40 cases. The initial archive run passed 103 cases and found a
missing closed diagnostic entry; the corrected diagnostic and expanded
Git rejection cases pass in the P1 run.
- The full server type graph passes with the Runner source exports
mapped locally because this checkout has no built Runner declarations.
The latest module-boundary check and `git diff --check` pass. Standard
package build/typecheck and broad final-head regression coverage remain
required in CI.
- The initial CI exposed missing admission scopes for standalone
filesystem APIs and a changed foreign-company error. The latest repair
keeps those APIs independent of a database and holds physical fences at
their actual database-backed mutation owners. The branch also includes
the existing master fix for unchanged Runner default-model assertions.
New review findings and new-head CI are being checked.
- The local canary command and bounded source selection are documented
in `doc/plans/2026-11-06-online-ordinary-source-fence.md`. Source
observations only read data. A fresh bounded metadata probe found 254
pending legacy records and zero unsettled local-process services. No
live import, hold, cancellation, provider action or source filesystem
write was performed for this change.

## Risks

- Run-scoped reuse now includes execution-workspace ownership in its
private key. Explicit project/agent sharing keeps its previous identity.
- A missing writer owner could make a source proof unsafe. Admission
derives physical aliases, includes future project selection and retains
all existing source/lifecycle/finalizer locks. Unknown and changed state
fail closed.
- Cross-company physical alias checks use bounded minimal-path pages.
Lexical-prefix filtering cannot safely replace them because a symlink
can hide a foreign alias. Unknown paths or more than 10,240 foreign
records leave the source explicitly unproven. More than 1,000
same-company local records also fail closed.
- The project key can serialize local preparation within one project. A
first project waits; additional project acquisition fails on contention
to avoid a lock cycle. Remote authority keeps its remote preparation
path.
- Recovery preservation does not prove provider termination or
successful file recovery. Existing provider allocations, checkpoints,
task intent and recovery actions remain authoritative.
- This slice does not finish shared Git migration. Git
administrative/common-object/alternates closure and exact nested
imported-child coverage remain the next owned extension. No global
writers-stopped shortcut is used online.

## Model Used

OpenAI GPT-6 through Codex, with reasoning, tool use and code execution.
The host does not expose a more specific backend model ID or
context-window size.

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have searched GitHub for duplicate or related PRs and linked
them above
- [x] I have either (a) linked existing issues with `Fixes: #` / `Closes
#` / `Refs #` OR (b) described the issue in-PR following the relevant
issue template
- [x] I have not referenced internal/instance-local Paperclip issues or
links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip`
URLs)
- [x] My branch name describes the change (e.g. `docs/...`, `fix/...`)
and contains no internal Paperclip ticket id or instance-derived details
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [x] All Paperclip CI gates are green
- [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups
- [x] I will address all Greptile and reviewer comments before
requesting merge

---------

Co-authored-by: Paperclip <noreply@paperclip.ing>
2026-11-06 18:42:45 -06:00
DottaandPaperclip a0ac81e114 fix(ui): show task image results in compact thumbnail grids (#19626)
## Thinking Path

> - Paperclip is the open source app people use to manage AI agents for
work.
> - Task feeds show agent messages, documents, and files in time order.
> - Each image currently uses a full feed card.
> - A turn with seven screenshots makes the conversation hard to scan.
> - This pull request groups adjacent images from the same run in a
compact grid.
> - Users can scan the results and open each image in the existing
gallery.

## Linked Issues or Issue Description

**What existing behavior does this improve?**

Image results in task history and the live task feed.

**Current behavior**

Each image uses a separate full-width card. Native image upload receipt
messages can also separate related screenshots.

**Proposed behavior**

Adjacent images from one run share a wrapping thumbnail grid. New image
results join the grid. Documents, video, and authored messages keep
their positions. The grid opens the existing gallery.

**Reason and benefit**

Users can see a batch of screenshots without scrolling past one large
card for each file.

**Breaking changes**

The feed layout changes. The stored comments, files, APIs, and
permissions do not change.

Related public work: Refs #17228. Refs #8785. Refs #7667. These changes
supplied the artifact cards and media gallery that this pull request
reuses.

## What Changed

- Add one image grouping function for settled history, turn history, and
live results. Group only images with the same known run. Keep the first
row key and each image key when results arrive.
- Add a token-based grid that reuses the media artifact cards and image
gallery.
- Add an optional typed attachment-preparation marker to file
registration and chat-file reuse. Preserve the marker through comment
normalization. Use it with matching image, author, and run links to hide
generated receipts. Keep the exact historical sentence as a fallback for
old receipts.
- Add nine production component stories with seven sample-account
screenshots. Cover mobile, Classic, mixed results, single images,
missing images, streaming, gallery navigation, and the complete feed
projection.
- Add grouping and production-feed regressions. Add 18 browser cases
across light and dark themes.
- Improve contrast for the shared fallback label and gallery counter
after the accessibility checks found low contrast.
- Match alternate original-image paths when opening the gallery. Keep a
separate Open original link beside Download in the gallery.
- Record the feed layout in DESIGN.md.

## Verification

- Final qualification at `09b12381ce85bee6593050bd8a2fa18cbe2c45a6`:
[required CI
passed](https://github.com/paperclipai/paperclip/actions/runs/42317080212/job/128237094513),
including typecheck, build, all test lanes, E2E, and verify. The
snapshot has 58 successful check runs, three conditional skips, one
neutral advisory job, and a successful legacy Snyk status. No pending or
failed checks remain. Greptile and Paperclip Review both score this
exact head 5/5; all review threads are resolved.

- Current-head local checks: 544 focused UI tests passed across 11
files, with one existing skip. UI/shared typechecks and token gates
pass. All 18 focused Storybook browser cases passed after the CSS merge,
with retries disabled.
- Two database integration cases verify file registration and chat-file
reuse receipt markers. All 52 issue-validator tests and six upstream
default-model tests passed.
- Regressions failed before the fixes for unknown-run grouping, receipt
wording, and authored progress text with an image. The repair uses a
typed receipt marker and requires matching author, attachment, image,
and run links before hiding a generated receipt. All five review
findings are resolved.
- Browser checks cover loaded images, wrapping columns, overflow,
missing-image fallback, streaming stability, keyboard gallery
navigation, original-file links, and downloads. Fixtures use production
renderers. These checks do not prove deployed persistence or provider
behavior and do not compare visual baselines.
- Local limits: the preflight helper could not finish because Cargo was
absent. The earlier low-memory server typecheck and dependency-free
selector did not replace final-head CI. The now-passing final CI
supplies broad typecheck, build, server, Runner, and E2E coverage.
- Prior independent CI failures remain recorded: one Slack timer case
passed a single diagnosed rerun; its exact timer cause was not proved. A
later chat shard lost its self-hosted runner without a test assertion
failure. The current revision passes that shard and all applicable
gates. Master conflict resolution retained both image-grid and patch CSS
rules.

## Risks

- Images without a run ID remain separate. Messages and other resource
types end each batch.
- Receipt suppression requires a matching preparation marker or the
exact legacy sentence, plus matching attachment, image work product,
run, and author. Tests preserve human messages and native progress text
with attachments. The optional marker uses existing JSON metadata and
needs no database migration.
- Shared gallery and fallback text now have stronger contrast.

## Model Used

OpenAI GPT-6, through Codex. The agent used reasoning, repository tools,
code execution, and browser tests. The runtime did not expose a more
specific model ID or context window size.

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have searched GitHub for duplicate or related PRs and linked
them above
- [x] I have either (a) linked existing issues with `Fixes: #` / `Closes
#` / `Refs #` OR (b) described the issue in-PR following the relevant
issue template
- [x] I have not referenced internal/instance-local Paperclip issues or
links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip`
URLs)
- [x] My branch name describes the change (e.g. `docs/...`, `fix/...`)
and contains no internal Paperclip ticket id or instance-derived details
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [x] All Paperclip CI gates are green
- [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups
- [x] I will address all Greptile and reviewer comments before
requesting merge

---------

Co-authored-by: Paperclip <noreply@paperclip.ing>
2026-11-06 18:42:22 -06:00
DottaandPaperclip 72f7b42fe3 Preserve settled failed controller state during online migration (#19678)
## Thinking Path

> - Paperclip controls agent work across web-server releases.
> - Volume-free servers need retained controller state in shared
storage.
> - Successful settled sources already support online migration.
> - Some retained failed sources have no accepted result and must stay
available for recovery inspection.
> - This change copies those sources under task, coordinator and
publication fences while unrelated work continues.
> - The original files, failed status and recovery warnings remain
unchanged.

## Linked Issues or Issue Description

Refs #19038. Refs #19631.

**What are you trying to improve?**
Preserve retained failed controller files without waiting for global
idle.

**What problem does this solve?**
The online producer skips terminal failed controllers. Their files can
still be needed for recovery inspection even when no accepted provider
artifact proves executable continuation.

**What would the improvement look like?**
A settled exact source can enter the existing encrypted archive store.
An accepted committed failed source can use the existing checkpoint
import. Busy, changed, unowned or foreign sources remain blocked.

## What Changed

- Add a source owner bound to the selected task session, run,
coordinator generation, admitted input and file digests.
- Check the task, physical finalizer lock, released coordinator,
canonical resume source and active related turns before upload and
before publication.
- Preserve failed sources through the existing encrypted archive format.
Do not treat archived bytes as execution authority or old-writer stop
proof.
- Allow the existing accepted committed checkpoint import for a finished
failed run without changing its status.
- Validate admitted input bindings before looking up local controller
files.
- Document the online preservation path and the final static writer
fence.

## Verification

- Real PostgreSQL: 125 cases passed across migration, controller
recovery and durable backup storage. One added assertion inspected an
unadmitted queued fixture; it was corrected while retaining the
queued-turn preservation and stale-publication assertions. The final
migration rerun passes 51/51; the other three affected suites pass
75/75.
- Genuine prepatch RED: online failed-source preservation and accepted
committed failed-source import both fail on the previous producer and
recovery owners.
- New cases cover independent restore after deleting the original
source, an expired but non-null coordinator owner, source mutation after
upload, a new related queued turn during upload, foreign input binding
and an accepted committed failed result.
- The full rebased server source and test-tree typecheck passes after
restoring its missing ignored workspace SDK link and building that
existing dependency.
- Module boundaries and whitespace checks pass.
- Rebased onto current master; both provider-artifact imports and the
new archive owner are preserved. Rebased type and module-boundary checks
pass. All six archive cases pass on the exact rebased head (39.68
seconds). All CI gates pass on exact head
81fc974cd9. Fresh Greptile review is 5/5
with no unresolved comments. No serving migration, deletion or
deployment is performed by this PR.

- Review memory fix: 64 KiB streamed hashes avoid retaining another
controller string at each publication fence. A 256 MiB source is hashed
three times while the original string remains live under a 512 MiB heap.
The old full-string comparison reproduces an OOM; the fixed two-case
suite passes. Full source/test-tree typecheck and module boundaries pass
on the new code. All six real-PostgreSQL archive cases pass again with
streaming enabled (17.31 seconds); ownership, queued-turn and
post-upload mutation guards remain covered.

## Risks

- This is a copy-only preservation operation. It does not prove the
original process has stopped. Final enrollment must arm static ephemeral
mode on the original volume, observe the old deployment stopped and
repeat data eligibility.
- A source change during upload leaves an unpublished pending object.
The normal retention owner handles obsolete attempts; the source remains
required until a verified current archive exists.
- An archive is forensic evidence. It does not make an unaccepted failed
provider result resumable.

## Model Used

OpenAI Codex, GPT-6 family, with reasoning and code execution. The host
does not expose the exact serving model ID or context-window size.

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have searched GitHub for duplicate or related PRs and linked
them above
- [x] I have either (a) linked existing issues with `Fixes: #` / `Closes
#` / `Refs #` OR (b) described the issue in-PR following the relevant
issue template
- [x] I have not referenced internal/instance-local Paperclip issues or
links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip`
URLs)
- [x] My branch name describes the change (e.g. `docs/...`, `fix/...`)
and contains no internal Paperclip ticket id or instance-derived details
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [x] All Paperclip CI gates are green
- [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups
- [x] I will address all Greptile and reviewer comments before
requesting merge

---------

Co-authored-by: Paperclip <noreply@paperclip.ing>
2026-11-06 18:38:50 -06:00
Nicky LeachandClaude Opus 5.5 8ed712f00a test(server): split workspace-recovery tests into seven feature files (#19664)
## Thinking Path

> - Paperclip is the open source app people use to manage AI agents for
work
> - Contributors wait for PR CI before merge, so CI wall-clock time sets
the pace of work
> - PR CI runs the general server tests in 12 shards, and each shard
runs files in parallel on 4 workers
> - `server/src/services/workspace-recovery.test.ts` takes about 699
seconds in CI by itself. A file runs whole on one worker, so shard 2/12
takes 11.5 minutes (median) when the other shards take about 7 minutes
> - A different shard count cannot fix this, because the time of one
file sets the minimum time of its shard
> - This pull request splits the file into seven feature files with a
shared fixture
> - The benefit is that the shards can balance again. This removes about
2 minutes from the median PR CI time and about 5 minutes from the p90

## Linked Issues or Issue Description

**What existing behavior does this improve?**

The time of the general server test shards in PR CI.

**Subsystem affected**

Server tests: workspace recovery
(`server/src/services/workspace-recovery*.test.ts`) and the
general-server shard weights.

**Current behavior**

One file holds 460 tests and takes about 699 seconds in CI. Its shard is
the slowest in most PR runs.

**Proposed behavior**

Seven files of about 60 to 140 seconds each. The shard partitioner
places them on different shards.

**Reason and benefit**

The general server shards finish close together. The PR CI critical path
becomes shorter.

**Breaking changes**

None. No product code changes.

## What Changed

- Split `server/src/services/workspace-recovery.test.ts` into seven
files by feature area:
  - `retry-copyback` (76 tests);
  - `preparation` (80);
  - `preparation-proof` (53);
  - `preparation-dispatch` (25);
  - `preparation-gates` (43);
  - `warm-handoff` (36);
  - `admission` (147).
- Add `server/src/services/workspace-recovery.test-fixture.ts` with the
shared hooks, `seed`, helpers and an embedded Postgres per file.
  - Test bodies, hooks and helpers are moved without change.
- Four lines that assigned the shared `db`, `root` or `connectionString`
now call `replaceFixtureState(...)`.
- `scripts/general-server-shard-durations.json`: replace the old key
with the seven new files. The weights divide the current CI cost of the
old file (636 seconds, master runs 42296943853 and 42294279748) in
proportion to measured local time. A `splitEstimates` entry records the
method, as for earlier splits.
- Update the file references in `doc/task-recovery.md` and
`maps/feature-map/recovery.md`.

## Verification

- `vitest list`, before and after: 136 declarations each, with identical
sorted names. At run time, 460 tests before and after.
- Each new file passes when run alone: 76, 80, 53, 25, 43, 36 and 147
tests.
- All seven files run together with `--maxWorkers=1`: 460/460 pass.
- A timing check of the original file:
- `afterEach` took 4.7 seconds in total and `beforeAll` 4.1 seconds, out
of about 1,000 seconds, so the teardown is not the cost;
  - most of the time is in three `it.each` blocks.
- Focused `tsc --noEmit` on the eight new files: clean.
- `node --test scripts/__tests__/run-vitest-stable-shard.test.mjs`:
39/39 pass.
- `node scripts/check-maps.mjs`: aligned.
- With the new weights, the 12-shard partition puts the seven files on
seven different shards.

## Risks

- The CI time of each new file is an estimate from local runs. If
`workspace-recovery-preparation.test.ts` takes more than about 150
seconds in CI, the next split point is the "keeps ancestor Retry held"
block.
- Each file starts its own embedded Postgres, which adds a few seconds
of setup per file.
- The optional external-database environment variables keep their old
behavior but were not tested. CI does not set them.

## Model Used

- Claude Opus 5.5 (`claude-opus-5-5`) in Claude Code, with tool use and
code execution. A Claude sub-agent made the split, and the parent
session reviewed it and corrected the shard weights.

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have searched GitHub for duplicate or related PRs and linked
them above
- [x] I have either (a) linked existing issues with `Fixes: #` / `Closes
#` / `Refs #` OR (b) described the issue in-PR following the relevant
issue template
- [x] I have not referenced internal/instance-local Paperclip issues or
links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip`
URLs)
- [x] My branch name describes the change (e.g. `docs/...`, `fix/...`)
and contains no internal Paperclip ticket id or instance-derived details
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [x] All Paperclip CI gates are green
- [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups
- [x] I will address all Greptile and reviewer comments before
requesting merge

🤖 Generated with [Claude Code](https://claude.com/claude-code)

---------

Co-authored-by: Claude Opus 5.5 <noreply@anthropic.com>
2026-11-07 00:38:41 +00:00
Nicky LeachandPaperclip d6f4155bad Refresh checkpoint writers when controller ownership changes (#19679)
## Thinking Path

> - Paperclip manages AI agents and keeps their work attached to tasks.
> - Core saves native Runner checkpoints so a session can continue under
a later run.
> - The checkpoint records can still belong to source run A after run B
becomes the current owner.
> - The writer cache currently keeps A's first write authority even
after Core validates B.
> - This pull request renews that writer when the authority, boot,
generation, or lease owner changes.
> - Repeated registration under the same authority keeps its work
history. Stale and expired owners still cannot write.

## Linked Issues or Issue Description

Refs: #19611. Related: #19225.

**What happened?**

A checkpoint writer is cached by source run ID. After Core validates a
successor owner, a new registration still uses the cached writer for the
old owner. Saving new work can then fail with
`native_runner_checkpoint_owner_lost`.

**Expected behavior**

Use the validated current owner for later writes. Preserve the existing
writer when its authority has not changed. Continue to reject stale or
expired ownership.

**Steps to reproduce**

1. Register a source checkpoint writer and save its first command.
2. Complete the source run and give its task to a successor with a
current write lease.
3. Register the same source checkpoint under the successor and save a
new command. The unchanged code rejects this write.

## What Changed

- Store the write-authority fields with each cached writer.
- Replace the writer only when its authority run, boot, controller
generation, or lease owner changes.
- Add a PostgreSQL regression for successor handover, repeated
registration, generation renewal, stale writes, and expired leases.

## Verification

- The new regression fails on base `913102870d` at the successor's
checkpoint write.
- The fixed regression passes: `cd server && node
../node_modules/vitest/vitest.mjs run
src/services/native-runtime/native-runner-checkpoint-authority.integration.test.ts`.
- A focused strict TypeScript check covers the source, regression, and
their imports.
- The maintained general-server selector includes the regression. It
needs no native process or new CI group.
- The scoped diff passes whitespace and changed-line secret/PII checks.
- Targeted database and focused strict TypeScript checks pass. Required
CI will supply full regression coverage.
- CI and standard review are pending for this draft.

## Risks

A renewed writer starts a new in-memory work history. The authority
comparison limits that reset to a real ownership change. Each database
write still checks the current lease and generation in its transaction.
This change adds no schema, API, or automatic session-release behavior.

## Model Used

OpenAI GPT-6.1 Sol (`gpt-6.1-sol`), high reasoning, with repository
inspection, code execution, and test tools.

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have searched GitHub for duplicate or related PRs and linked
them above
- [x] I have either (a) linked existing issues with `Fixes: #` / `Closes
#` / `Refs #` OR (b) described the issue in-PR following the relevant
issue template
- [x] I have not referenced internal/instance-local Paperclip issues or
links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip`
URLs)
- [x] My branch name describes the change (e.g. `docs/...`, `fix/...`)
and contains no internal Paperclip ticket id or instance-derived details
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [x] I have updated relevant documentation to reflect my changes
  N/A: This internal correction changes no documented interface.
- [x] I have considered and documented any risks above
- [x] All Paperclip CI gates are green
- [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups
- [x] I will address all Greptile and reviewer comments before
requesting merge

Co-authored-by: Paperclip <noreply@paperclip.ing>
2026-11-06 16:36:33 -08:00
Devin FoleyandPaperclip 2a4a001d37 Preserve GitHub access repair guidance for MCP callers (#19655)
Return GitHub permission denials as failed MCP tool results with trusted,
connection-specific recovery guidance. Explain the personal-account and
organization App installation boundary without replaying writes or bypassing
provider-content checks. Align the repair steps with the Permissions UI.

Cover enabled model checks and malicious provider failures across direct
calls, connection tests and stored approvals. Repair the CI-exposed synthetic
onboarding environment fixture without weakening cancellation assertions.

Verified 311 targeted tests, six onboarding Playwright tests, server
typecheck, module boundaries, full CI and Apex 5/5 with all threads resolved.

Co-Authored-By: Paperclip <noreply@paperclip.ing>
2026-11-06 16:32:27 -08:00
DottaandPaperclip a3eecf1fc9 Preserve admitted runtime skill bundles during server replacement (#19675)
## Thinking Path

> - Paperclip is the open source app people use to manage AI agents for
work.
> - Native runs keep the exact skill files admitted for execution and
recovery.
> - Older inputs can name immutable local bundles without a skill
version ID.
> - Installed skill heads alone do not preserve those admitted bundles.
> - Server replacement needs a durable source for each retained bundle.
> - This pull request copies authenticated bundles through the existing
package owner and restores their exact projections.
> - The benefit is preservation during online migration without stopping
active work or settling recovery warnings.

## Linked Issues or Issue Description

Refs #19656. Related: #19660.

**What happened?**

Older native execution inputs can contain skill bundles with a null
version ID. Recovery skips those bundles. Startup installation checks
can pass even when those retained inputs still require the old
filesystem.

**Expected behavior**

Preserve each retained admitted bundle in object storage. Restore its
original bytes, modes and digests on an empty replacement host. Keep its
null pin and all run, controller and recovery state. Block startup and
enrollment while a concrete local asset obligation remains.

**Steps to reproduce**

Retain a native run with an admitted local skill bundle and a null
version ID. Convert its installed skill head to durable storage. Replace
the server home and attempt recovery. The old bundle path remains in the
recovered context.

## What Changed

- Add a bounded `runtime-assets` phase to the existing skill package
maintenance CLI. It copies exact admitted files under the runtime asset
publication lock, verifies the durable package, and appends a run-bound
receipt after source revalidation.
- Keep original files, null pins, task intent, warnings and controller
leases. Support an active run through copy-only preservation. Do not
start a turn or claim provider ownership.
- Verify and reuse a healthy canonical local bundle before storage
reads. Restore missing or damaged bundles through the existing package
and native asset materializers. Use the authenticated original manifest
to preserve exact read and execute modes. Accept a later contract
revision only when the run binding and exact skill selection remain
unchanged.
- Check retained recovery obligations and current task sessions during
both startup and migration eligibility. Ignore ordinary admission that
has no completed execution input.
- Protect receipt-backed packages from orphan collection. Serialize
receipt publication and deletion on the package row, then check
references in a fresh statement after the lock.
- Add real PostgreSQL and filesystem regressions. Replace a
delete-method proxy with an actual upload-renewal row-lock race. Publish
mutation activity only after commit.

## Verification

- Baseline production startup gate failed the new concrete-asset
regression as expected. The fixed gate passed. The actual before-fix
preservation owner also failed recovery from a healthy local bundle
during a simulated storage outage. A verified local-first path fixes
that regression.
- Eight preservation tests passed with real PostgreSQL, streaming
storage, archive extraction and native materialization. They cover cold
recovery, exact modes and binary bytes, active ownership, changed
sources and bindings, contract revisions, missing or corrupt receipts,
and publication/collection races.
- Six affected package collection/deletion controls and three existing
startup controls passed. The existing versioned recovery consumer passed
a sequential retry.
- One fixture attempt failed on its cleanup foreign-key order; the
fixture was corrected. One existing suite hit its unchanged 30-second
database startup hook before test execution. The unchanged single
consumer passed on retry. These failures remain recorded.
- Source, changed-test and CLI TypeScript checks passed. Rebase
preserved both the local instruction-copy and runtime-asset guards.
Current-head changed-test checks passed. Final PostgreSQL rerun passed
all eleven preservation/startup cases. Current CLI check passed.
Required CI remains pending at the trusted-runner gate.
- Current canonical bundled creation uses package preparation plus
atomic content/head publication. Native preparation requests immutable
version snapshots before delivery. Converted installations and new
canonical bundled creation therefore do not recreate the historical
null-version asset dependency.
- Fresh Greptile review on exact head
`54c7dd048c9016c1af9fc68213d5ae053ac16499` passed at 5/5 with zero
unresolved threads.
- Module boundaries, whitespace, and credential/internal-reference scans
passed. No live source writes, provider actions or migration apply were
performed.

## Risks

Missing, changed or unsafe local files remain blockers. This command
does not repair a previously published package whose objects later
disappear or become corrupt. It also refuses malformed preservation
receipts. It retains the original local files and prior evidence and
keeps removal blocked. Automatic repair requires a separate canonical
package-owner recovery operation; direct database edits are not an
accepted recovery path. Failed publication keeps the original files and
any unreferenced package for normal collection. The readiness check is
explicit startup or enrollment work, not a background scan. Its cost
grows with retained admitted asset obligations. Older readers must be
upgraded before the old volume is removed. This change preserves asset
bytes; it does not settle business recovery or qualify unrelated volume
dependencies.

## Model Used

OpenAI GPT-6 (Codex). The runtime did not expose a more specific backend
model ID or context-window size. Used reasoning, code editing, and tool
execution.

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have searched GitHub for duplicate or related PRs and linked
them above
- [x] I have either (a) linked existing issues with `Fixes: #` / `Closes
#` / `Refs #` OR (b) described the issue in-PR following the relevant
issue template
- [x] I have not referenced internal/instance-local Paperclip issues or
links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip`
URLs)
- [x] My branch name describes the change (e.g. `docs/...`, `fix/...`)
and contains no internal Paperclip ticket id or instance-derived details
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [x] All Paperclip CI gates are green
- [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups
- [x] I will address all Greptile and reviewer comments before
requesting merge

---------

Co-authored-by: Paperclip <noreply@paperclip.ing>
2026-11-06 18:23:53 -06:00
DottaandClaude Opus 5.5 6d1ecfc420 fix(accounting): close a remote run's lost receipt once its sandboxes are terminated (#19606)
## Thinking Path

> - Paperclip is the open source app people use to manage AI agents for
work
> - Budget admission waits while completed runs await accounting; #19497
made that a hold on new work, never a hard stop
> - #19497 also closes a lost usage receipt once a local provider is
verified stopped, so the hold ends
> - A remote (Daytona) run has no local stop event and keeps its
recorded remote process identity, so its lost receipt never closed. The
company then held all new work until a receipt that can no longer arrive
> - This pull request closes a remote run's lost receipt once every
sandbox it used carries a provider termination receipt
> - The benefit is that a restart that kills a Daytona turn no longer
stops a company's new work

## Linked Issues or Issue Description

Follow-up to #19497. Refs #19544 (Daytona chaos harness).

**What happened?**
In a Daytona restart wave, run `a261c30b` failed after native recovery
was blocked. Its usage receipt stayed incomplete
(`accountingReceiptReady: false`). Both of its sandbox leases were
released with a `destroyed` termination receipt, but accounting stayed
pending. Admission then refused new company work with "New work must
wait while a native run recovers its unfinished accounting".

**What did you expect?**
Once every sandbox of the run is stopped or destroyed, no runner can
report usage for it. The known part of its usage should settle as an
unpriced charge, as it does for a verified local stop, and new work
should be admitted.

**Steps to reproduce**
1. Run a native task on a Daytona environment with a hard-stop budget.
2. Kill the control plane during the provider turn so the turn's receipt
is lost and native recovery ends in terminal failure.
3. After the sandbox lease is released with a termination receipt,
observe that the run stays `cost_accounting_pending` and new work is
held.

## What Changed

- `run-cost-accounting.ts`: the closed-receipt predicate gains a remote
branch. A native run in terminal failure without a result (failed,
cancelled, timed out or interrupted) is closed when it has at least one
environment lease and every lease carries a
`paperclip.remote-termination.v1` receipt bound to that lease, run,
company, provider and provider lease ID, with state `stopped` or
`destroyed`, after a successful release. This mirrors
`hasRemoteTerminationReceipt`. One SQL predicate still serves the
reconciler scan and settlement.
- The local branch is unchanged: a failed run with a verified local stop
event and a cleared process identity.
- A sandbox that may still run (no receipt, lease still active), a
receipt bound to another sandbox, or a run with no lease keeps its debt
pending.
- `budget-enforcement-worker.ts`: the accounting worker also wakes when
environment-cleanup or retained-session-cleanup work commits. Those are
the signals the lease writers already send when they release or stop a
sandbox.
- `doc/SPEC-implementation.md`: documents the remote closure rule.

## Verification

- `closed-native-receipt-accounting.test.ts` (embedded Postgres):
- A failed and a cancelled remote run, with one destroyed and one
stopped sandbox, settle as one unpriced charge, settle the reservation,
and clear admission. These are red on master.
- Debt stays pending for an active sandbox with no receipt, for one of
two sandboxes without a receipt, for a receipt bound to another sandbox,
and for a run with no lease.
- `budget-enforcement-worker.test.ts`: the accounting worker wakes on
environment-cleanup and retained-session-cleanup commits, and stops
waking after `stop()`. These are red on master.
- Existing suites pass locally: native-stop-accounting,
budget-enforcement-scoping, heartbeat-cost-accounting,
run-cost-accounting, cost-data-quality, budgets-service. Server
typecheck passes.
- Live Daytona restart wave: results in the comments.

## Risks

- A cancelled remote run now closes once its sandboxes are terminated.
Stop recovery could otherwise reattach a recorder, but a stopped or
destroyed sandbox has no runner to reattach to. Local cancelled runs
keep their drain.
- Workspace export can restart a stopped sandbox and removes its
termination receipt first. A receipt that arrives after settlement still
posts through late-receipt reconciliation.
- Reusable-lease chains (`resolveRemoteTerminationLease`) and
recovered-cleanup stop receipts are not mirrored, so those runs stay
pending. That is the conservative side.
- Low query cost: the predicate runs only for pending terminal runs.

## Model Used

- Claude Opus 5.5 (`claude-opus-5-5`), Anthropic, via Claude Code with
tool use (shell, file editing, embedded Postgres tests, live
restart-chaos harness).

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have searched GitHub for duplicate or related PRs and linked
them above
- [x] I have either (a) linked existing issues with `Fixes: #` / `Closes
#` / `Refs #` OR (b) described the issue in-PR following the relevant
issue template
- [x] I have not referenced internal/instance-local Paperclip issues or
links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip`
URLs)
- [x] My branch name describes the change (e.g. `docs/...`, `fix/...`)
and contains no internal Paperclip ticket id or instance-derived details
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [ ] All Paperclip CI gates are green
- [ ] Greptile is 5/5 with no open P2s, recommendations, or follow-ups
- [x] I will address all Greptile and reviewer comments before
requesting merge

🤖 Generated with [Claude Code](https://claude.com/claude-code)

---------

Co-authored-by: Claude Opus 5.5 <noreply@anthropic.com>
2026-11-06 18:17:11 -06:00
DottaandPaperclip b8d94b3ad1 test(server): verify status and object deadlines across cold sleep (#19347)
## Thinking Path

> - Paperclip manages agents and their useful work.
> - Status cards and external objects can have future refresh deadlines.
> - A stopped tenant needs a durable Cloud alarm to return for those
deadlines.
> - A local quiet report alone does not prove that handoff or later
useful work.
> - Acceptance must exercise the normal producer, authorization, claims
and alarm owner.
> - This PR adds opt-in signed cold-owner acceptance and bounded
launcher controls.

## Linked Issues or Issue Description

Refs #19001 and #19191, which have merged. This PR targets master and
adds acceptance for the existing status and object owners.

**What happened?**

The existing local coverage did not join useful status generation or
built-in GitHub refresh with signed Cloud alarm persistence, physical
child retirement and cold reactivation at the original deadline.

**Expected behavior**

Keep the feature enabled. Complete useful work through its normal owner.
Persist the exact authorized alarm before stopping the child. Wake and
process the same original deadline without losing identity, claims,
retries or useful results.

**Steps to reproduce**

Use the checked-in Node24 launcher with separate owned loopback
App/Cloud test databases, a compiled Cloud checkout and the pinned
Node22 executable. Select one status or object bootstrap, cycle or
identity case. The command validates fresh evidence and database
ownership before starting its guarded worker.

**Paperclip version or commit**

Current candidate `ea911278b22c855d6722e43afc026bfc5c031405` normally
merges fetched master `07a548073ab48f13cb93b2fdc31553a5da88a070`. All
eight owned acceptance files are byte-identical to
`c08e64fa857d39bdb79352e94d156db7a4dbebf3`; all unrelated paths exactly
match master. The guard-argument repair and source-specific historical
cycle proof are preserved.

## What Changed

- Add one named opt-in case per owner/stage/diagnostic combination. Keep
the shared business body and its original deadlines, assertions and
cleanup.
- Drive actual managed App startup, authenticated producers, persisted
claims and the signed Cloud SQL alarm before physical child stop.
- Retain the generated five-secret fixture profile across cold boots.
Store it in private directories and retain only names, hashes and modes
in evidence.
- Add optional query timestamps to the existing proxy and harness.
Existing callers keep their default behavior.
- Add launcher refusal controls and assert its complete child argument
list. Both explicit guard preloads and the exact child `NODE_OPTIONS`
must match.

## Verification

- The current preflight repair has causal proof: the old controls pass
all nine cases with an invalid worker preload flag. The new assertions
reject that same command in both success controls (two failures/seven
passes). Restoring the correct command passes all nine cases. The
original refusal, freshness, symlink and byte-preservation assertions
remain unchanged. All 33 recorded Node PIDs and three groups close;
temporary copies and private directories are removed. These controls
stop at the declared spawn stub. They verify the full command contract
and do not claim to execute Vitest.
- The prior real named status bootstrap passed in 72.942 seconds: one
selected case/six explicit skips. It exercised the actual launcher and
Vitest fork, useful normal generation, current authorization, settled
claims, original 900000ms interval and signed SQL alarm
generation/operation-lock acknowledgement before physical child stop.
Recorded processes and final SQL sessions closed; both successful
databases were normally dropped.
- Earlier normal status and GitHub-object cycles qualified their real
900-second and 300-second original deadlines, cold reactivation and
useful second results. Their complete original failure and recovery
records remain source-specific; no shortened business clock or
manufactured completion is used.
- On current integrated head `ea911278`, own frozen offline setup and
normal shared/SDK, Runner and App declaration prerequisites passed. The
status test and its imported closure pass the affected normal test-tree
compiler program with original options/references. The actual named
normal status bootstrap then passed: one selected case/six skips, 82.202
seconds in Vitest and 85.616 seconds in the launcher. It used the real
checked-in launcher, normal App/SDK/process agent and exact compiled
Cloud `389878364b42dd129835d263f91882c5774d5123`. The original 900000ms
interval and 120000ms alarm lead remain unchanged; useful v1 and signed
SQL alarm generation/operation-lock acknowledgement precede physical App
stop. All six recorded process IDs and the runtime group were absent;
independent final test-database sessions were zero, with no observer
during execution. Both fresh success databases were normally dropped.
This refreshes the changed consumer seams through handoff and stop; it
is not another cold-wake/useful-v2/full-cycle result. Historical cycles
remain tied to their measured source.
- Fresh exact-head CI and complete edited bot reviews are required
before merge. A whole final-tree local build/test or deployed suspension
is not claimed. Local provider, process and S3 boundaries are controlled
fixtures; no live GitHub provider or Railway/Neon suspension claim
follows.

## Risks

- These tests use real SQL and wall clocks and are opt-in. Their
fixtures must stay isolated and retain failed evidence.
- Stable fixture secrets must remain private and must not appear in
logs. Cleanup keeps them when owner closure is uncertain.
- The acceptance body stays shared to preserve measured evidence. The
named registration and command controls make selection failures visible.
- This PR does not change production, schema or feature enablement.

## Model Used

OpenAI `gpt-6.1-sol` produced the delegated acceptance work. OpenAI
Codex, based on GPT-6, performed managing review, source integration and
the preflight argument repair. Both used repository tools and code
execution. The coordinator's exact backend snapshot and context-window
size were not exposed.

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used
- [x] I have checked ROADMAP.md and confirmed this does not duplicate
planned core work
- [x] I have searched related PRs and linked the existing foundations
- [x] I have described the issue with the bug-template fields
- [x] I have not referenced internal or instance-local issues or links
- [x] My branch name describes the change
- [x] I have run the stated focused local tests and preserved their
limits
- [x] I have added or updated tests
- [x] I have documented the opt-in command and evidence requirements
- [x] I have documented risks
- [ ] All current-head CI gates are green
- [ ] Current-head Greptile is 5/5 with no open findings
- [x] I will address reviewer findings before merge

---------

Co-authored-by: Paperclip <noreply@paperclip.ing>
2026-11-06 18:15:56 -06:00
DottaandClaude Opus 5.5 7c673e695f fix(chat): name tasks by identifier, not UUID, in tool rows and agent text (#19635)
## Thinking Path

> - Paperclip is the open source app people use to manage AI agents for
work
> - New users meet Paperclip through the onboarding chat with their
first agent, and through task briefs that agents write
> - A browser walk of onboarding found internal handles and
control-plane jargon in those user-facing surfaces
> - A tool row showed `Read taskId: e3ecf9bc-…`, an agent-written brief
cited `task … (id 2b330993-…)`, and a Codex agent told a new user about
"receipts", "execution policy", and a "rejected policy patch"
> - Raw UUIDs and mechanism narration make the product look broken and
give the user nothing to act on
> - This pull request makes tool rows name a task by its identifier, and
tells agents to reference identifiers and to describe outcomes, not
mechanics
> - The benefit is that a new user sees "Read <task identifier>" and
plain progress updates

## Linked Issues or Issue Description

**What happened?**
In the task chat, a collapsed tool row rendered the raw call argument
`taskId: <uuid>`. An agent-written task description included a raw task
UUID next to the task identifier. A Codex chief of staff narrated
internal mechanics (receipts, execution policies, a rejected policy
patch) to a new user in chat.

**Expected behavior**
Tool rows name the task by its identifier. Agent-written text links
tasks and documents by identifier. Agents tell the user what happened,
what it means, and the next step.

**Steps to reproduce**
1. Run onboarding with the Codex API runner and accept a single-task
proposal.
2. Watch the handoff in the chief-of-staff chat.
3. See the task lookup tool row and the narration. With the Claude API
runner and the plan path, open a child task created from the plan and
read its description.

## What Changed

- `ui/src/components/task-chat/transcript-adapter.ts`: a tool row's
target never contains a UUID argument. A `taskId`/`issueId` UUID is kept
as `taskRefId` on the tool item.
- New `ui/src/components/task-chat/task-reference.ts`:
`useTaskReferenceLabel` reads the task from the shared issue detail
query cache and returns its identifier. It returns "task" until the task
resolves or when it cannot.
- `TaskChatRunnerActivityGroup` and `TaskChatToolCard` show that
identifier as the row subject. They load the task only for rows that
have a task reference.
- `skills/paperclip/SKILL.md` (Comment Style): two new required rules.
"No raw IDs in prose" and "Describe outcomes, not mechanics".
- First-task onboarding skill: a "Talk in outcomes" rule. Non-inline
handoff inputs use an identifier link, not a raw UUID.
- Chief-of-staff persona (`AGENTS.md` for the first agent): the same
plain-language rule, so it applies in every chat.
- `skills/paperclip-converting-plans-to-tasks/SKILL.md`: task
descriptions reference other tasks and documents by identifier link,
never by raw UUID.
- No change to `skills-releases/` snapshots. They are frozen releases.

## Verification

Red on master (fix files reverted, new tests kept):

```
ui  tool-row-task-reference.test.tsx
 FAIL  ... > falls back to a plain word while the task cannot be resolved
AssertionError: expected 'ReadtaskId: e3ecf9bc-099a-4b10-8169-9…' not to contain 'e3ecf9bc-099a-4b10-8169-9ce490a91e3d'
      Tests  3 failed (3)
server  user-facing-wording-guidance.test.ts
      Tests  6 failed (6)
```

Green with the fix:

```
ui  tool-row-task-reference.test.tsx        Tests  3 passed (3)
server  user-facing-wording-guidance.test.ts Tests  6 passed (6)
```

Neighbouring suites:

- `cd ui && npx vitest run src/components/task-chat
src/components/TaskChatThread src/components/transcript`: 70 files, 1448
passed, 1 skipped.
- From the repo root: `onboarding-first-task-assets`,
`paperclip-skill-utils`, `onboarding-first-task-admission`,
`hiring-operational-examples`, `cli-invocation-safety`, and the new
guidance test all pass.
- `pnpm check:token-gates`: all gates clean. The change adds no styles.
- `ui` typecheck: no errors in the changed files.
- Not run locally: `agent-skills-routes.test.ts` hit a 30 s `beforeAll`
import timeout on a cold cache. CI covers it.

## Risks

- Low risk. A row that names a task loads that task once through the
shared issue detail cache. The thread usually has it cached already. A
failed load shows "task" and does not retry.
- Rows now show other non-UUID arguments after the identifier (for
example `<identifier> · status: done`). Rows without a task reference do
not change.
- The skill text changes the guidance that agents read. They do not
change permissions, tools, or API behavior.

> For core feature work, check [`ROADMAP.md`](ROADMAP.md) first and
discuss it in `#dev` before opening the PR. Feature PRs that overlap
with planned core work may need to be redirected — check the roadmap
first. See `CONTRIBUTING.md`.

## Model Used

- Claude Opus 5.5 (`claude-opus-5-5`), Anthropic, run in Claude Code
with tool use (shell, file edits, test execution).

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have searched GitHub for duplicate or related PRs and linked
them above
- [x] I have either (a) linked existing issues with `Fixes: #` / `Closes
#` / `Refs #` OR (b) described the issue in-PR following the relevant
issue template
- [x] I have not referenced internal/instance-local Paperclip issues or
links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip`
URLs)
- [x] My branch name describes the change (e.g. `docs/...`, `fix/...`)
and contains no internal Paperclip ticket id or instance-derived details
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [x] All Paperclip CI gates are green
- [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups
- [x] I will address all Greptile and reviewer comments before
requesting merge

🤖 Generated with [Claude Code](https://claude.com/claude-code)

---------

Co-authored-by: Claude Opus 5.5 <noreply@anthropic.com>
2026-11-06 18:12:48 -06:00
DottaandClaude Opus 5.5 6c7cc2c5d6 fix(native): do not spend a recovery attempt resuming a cleanly drained run (#19625)
## Thinking Path

> - Paperclip is the open source app people use to manage AI agents for
work
> - Native runs have an execution recovery budget of three provider
attempts, so a run that keeps failing stops retrying
> - A graceful shutdown (deploy or SIGTERM) drains native runs: it
suspends them for reattachment by the next server
> - When the runner did not survive, the next boot resumed the turn and
charged one attempt
> - Restarts that the run did not cause used up its budget, so recovery
stopped and the task needed a manual Retry
> - This pull request does not charge an attempt for resuming a run that
a graceful drain suspended
> - The benefit is that deploys and graceful restarts no longer exhaust
a healthy run's recovery budget

## Linked Issues or Issue Description

**What happened?**
In restart-chaos testing, native runs reached
`execution_recovery_budget_exhausted` (3/3) only because of server
restarts. In one wave, two restarts crossed each of two runs. In a
second schedule (K1, then K2 when ready, then K2 again), each drain
correctly suspended the local ACPX Claude run, yet the fourth boot
blocked it with `native_restart_recovery_blocked`. Every resume after a
drain was classified `resume_dead_runner` and charged an attempt
(`nextNativeProviderAttempt` in `native-restart-recovery.ts`, applied by
the executor's execution claim).

**Expected behavior**
A restart that the run did not cause should not consume its recovery
budget. A graceful drain records `restart_suspended` and
`awaiting_runner_reattach`. The resume that follows should keep the
attempt count.

**Paperclip version or commit**
`master` at `4ef3fa4271`.

**Steps to reproduce**
Start a native local run. Send the server SIGTERM three times while the
run is active, with a full restart each time. The third resume is
blocked with `execution_recovery_budget_exhausted`.

## What Changed

- `suspendedByCleanDrain()` in `native-restart-recovery.ts` recognizes a
run whose most recent recovery claim is older than the drain's
`restart_suspended` entry. Ownership waits and deferred blocks between
the drain and the next claim do not erase it. The next claim consumes
it.
- A scan that waits for the old controller to exit (`awaiting_evidence`)
records one history entry per reason, so repeated scans cannot push the
drain record out of the bounded history.
- Restart claims carry `chargesProviderAttempt`. It is `false` for a
claim that follows a clean drain.
- `nextNativeProviderAttempt()` takes that flag. The executor passes it
when it takes the execution lease, so a drained resume keeps the current
attempt.
- The first execution is always counted: a run drained at attempt 0 (no
execution claimed it yet) still charges its first provider start.
- A run drained during its third attempt may continue that attempt. The
local resume and remote bootstrap gates skip the `>= 3` exhausted check
only for a non-charging resume, and the executor still refuses a fourth
attempt.
- A crash restart (no drain record) still charges one attempt.
Reattachment to a live runner still charges none.
- `doc/execution-semantics.md` states the rule next to the three-attempt
budget.

## Verification

- New test in
`server/src/__tests__/heartbeat-native-restart-suspension.test.ts`
(embedded Postgres, real heartbeat drain and restart recovery):
- Red before the fix: the claim after the drain had no
`chargesProviderAttempt: false`.
- Green after the fix, for drained attempts 0, 1 and 3: the crash claim
charges (`true`). After the drain, a controlled backend lets the
executor take its execution lease and records the saved
`native_run_finalizations.attempt` at provider dispatch: 1, 1 and 3.
Attempt 3 is claimed instead of blocked.
- Red at the executor: when the executor ignores the flag, the drained
attempt-1 resume saves 2.
- Ownership-wait case: the drained controller (the test process) is
still alive, so two scans wait. The history keeps `restart_suspended`
followed by one `awaiting_evidence` entry. After the controller is gone,
the claim does not charge, and attempt 3 continues.
- Classifier cases (local resume and remote bootstrap): attempt 3 after
a crash is still `execution_recovery_budget_exhausted`. Both new cases
were red on the previous revision.
- `heartbeat-native-restart-suspension.test.ts` 12/12,
`native-runner-restart-recovery.integration.test.ts` and
`native-runner-ownership.test.ts` 94 passed.
- `tsc --noEmit` for `server` passes.

## Risks

- A run that itself makes the server shut down gracefully, again and
again, would no longer be stopped by this budget. Graceful shutdowns are
operator or deploy actions, so this is unlikely. A crash loop (SIGKILL,
OOM) still charges an attempt on every restart, and a resumed turn that
fails still goes through the existing failure and replacement budget.
- This changes only the attempt count. Ownership checks, checkpoint
verification and the exhausted gate are unchanged.

> For core feature work, check [`ROADMAP.md`](ROADMAP.md) first and
discuss it in `#dev` before opening the PR. Feature PRs that overlap
with planned core work may need to be redirected — check the roadmap
first. See `CONTRIBUTING.md`.

## Model Used

- Claude Opus 5.5 (`claude-opus-5-5`), Anthropic, via Claude Code with
tool use (shell, file edits, test execution). Extended reasoning
enabled.

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have searched GitHub for duplicate or related PRs and linked
them above
- [x] I have either (a) linked existing issues with `Fixes: #` / `Closes
#` / `Refs #` OR (b) described the issue in-PR following the relevant
issue template
- [x] I have not referenced internal/instance-local Paperclip issues or
links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip`
URLs)
- [x] My branch name describes the change (e.g. `docs/...`, `fix/...`)
and contains no internal Paperclip ticket id or instance-derived details
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [x] All Paperclip CI gates are green
- [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups
- [x] I will address all Greptile and reviewer comments before
requesting merge

🤖 Generated with [Claude Code](https://claude.com/claude-code)

---------

Co-authored-by: Claude Opus 5.5 <noreply@anthropic.com>
2026-11-06 18:12:12 -06:00
DottaandPaperclip 56c2b28c04 Settle saved monitor results after a newer user request (#19644)
## Thinking Path

> - Paperclip is the open source app people use to manage AI agents for
work.
> - Native results must finish their durable finalization before later
work can reuse a saved workspace.
> - An accepted result can wait on a monitor while its workspace files
are recovered.
> - A newer user request can replace that old wait before finalization
resumes.
> - The old finalizer then reports lost monitor authority and blocks the
saved-workspace lineage.
> - This pull request proves the newer user request and settles only the
old result bookkeeping.
> - The benefit is released recovery work without replaying an old turn
or changing the current request.

## Linked Issues or Issue Description

Refs #17641 and #16975.

**What happened?**

An older successful native result has saved files and a server-issued
monitor receipt. Its task is now blocked after a newer user-comment
continuation failed during preparation. The old coordinator stays in
retryable_failure with monitor_wait_authority_lost. The retained
allocation ownership check correctly refuses the unresolved predecessor,
so later file recovery also stays held.

**Expected behavior**

The normal finalizer can settle the old accepted result when exact newer
user-request evidence proves the old wait is superseded. It must
preserve the current task, user input, ownership, schedule, accepted
result, and attempt history. It must not start provider work or publish
the old wait summary.

**Steps to reproduce**

Create an accepted successful monitor result and mark workspace
finalization successful. Leave the task blocked. Record a newer
canonical user comment and its ordinary user wake, either queued or
consumed by a same-task continuation that retains the exact comment
revision and source-run lineage. Call the real native finalizer. Before
the repair, both cases remain retryable_failure instead of settling.

**Paperclip version or commit**

e482f0f632, before this repair.

## What Changed

- Add a company-scoped passive supersession proof in the native monitor
owner. It applies only when the old wait is not currently eligible. The
proof binds the old accepted result and monitor receipt to a newer
canonical unedited user comment and matching user wake. Admitted
successors must retain the exact task, comment revision, and source
lineage.
- Recheck the proof under the existing task transaction, with
nonblocking shared locks on the comment and wake; contention uses the
existing status-race retry path. Commit a preserve decision with no
effects. Keep normal monitor authority, Stop, workspace finalization,
and retained-allocation guards unchanged.
- Add real PostgreSQL coverage for queued and consumed input, current
successor ownership, newer schedules, immutable accepted results,
attempt history, foreign/missing/cancelled evidence, and changes before
commit. Real scheduler ticks create no old monitor wake.
- Include the present superseding proof in the existing assessment
identity. The old failed assessment and decision stay immutable, while
the new decision gets its own assessment. Absent proof keeps the
existing fingerprint unchanged.
- Document passive finalization after a newer user request.

## Verification

- Behavioral RED before production edits: two real PostgreSQL finalizer
cases returned monitor_wait_authority_lost/retryable_failure instead of
settling after a newer queued or consumed user request. Initial
interrupted imports and rejected database setup were not counted as
behavioral failures.
- Additional real-boundary RED: the normal finalization reconciler
reconstructed both persisted errors but failed on
status_decisions_company_assessment_uq because the changed proof reused
an older assessment identity. The owned PostgreSQL log confirmed the
constraint. Including only the present proof in the existing fingerprint
makes both reconciler cases pass while old assessments and decisions
remain immutable.
- Review RED: real comment-row and wake-row contention produced
side_effect_planning_failed. A test-local 100ms lock timeout bounds this
diagnostic. Nonblocking proof locks and `55P03`→NativeStatusRaceError
safely defer both cases, preserve current state, and commit after the
original lock owner releases. Both regressions pass without weakening
the production lock or authority checks.
- Final local GREEN at `0c40331d8d7f587c9a532fbc51d358bfacd1bd46`: five
files, 111 passing tests (126.17s), including all 54 saved-monitor
cases, actual persisted-error reconciliation with an absent retry
deadline and older boot identity, the status
arbiter/task-monitor/terminal-status suites, and six model fixtures.
Current requests, schedules, holds, accepted results and prior
assessments/decisions remain unchanged; normal attempt increments and
idempotent repeat are asserted. Real scheduler ticks create no old
monitor wake.
- All seven server typecheck layers, module-boundary and whitespace
checks pass at the final inputs. Required preflight passes in 15.348s.
No new code comments were added. Local environment: macOS arm64, Node
26.4.0, pinned pnpm 9.15.4, Vitest 5.0.3, owned disposable PostgreSQL 18
with bounded 1GiB tmpfs; no shared Docker data was pruned.
- [Final-head
CI](https://github.com/paperclipai/paperclip/actions/runs/42311889918):
59 successful checks,three intentional skips,one neutral optional
review,zero failed or pending checks. Required E2E and verify aggregates
pass. Greptile reviewed this exact head at 5/5 with no unresolved
findings.
- The [original support
job](https://github.com/paperclipai/paperclip/actions/runs/42311889918/job/128217026059)
passed 6849 assertions and hit one 30000ms timeout in an unchanged
private-evidence fixture. The exact case passed locally; all 41 cases
passed together (42.79s). The [identical-input sibling CI
control](https://github.com/paperclipai/paperclip/actions/runs/42311878548/job/128216598362)
passed all 6850 assertions and the 41-case file in 5.417s. Exactly one
targeted replay was authorized and dispatched after workflow completion
and ordinary quota reset, preserving the other 57 passing checks.
[Replay
job128227417618](https://github.com/paperclipai/paperclip/actions/runs/42311889918/job/128227417618)
passed 323 files/6850 assertions with four existing skips; the 41-case
file passed in 5.665s. No fixture, source, assertion, timeout,
credentials or full workflow was changed/replayed. The original timeout
remains recorded; its precise host-level cause was not determined.
- Inherited baseline failures were handled through normal integration of
existing #19610 (model expectations), #19627 (deterministic Slack
deadline fixture), and #19646 (current trusted Runner lane flags). All
four exact lane-command dry runs and the lane-inventory regression pass.
No force push or new production patch was used for those failures.
- Hosted recovery remains pending deployment and acceptance through the
normal pipeline; these checks do not claim the live task has already
recovered.

## Risks

- The new proof must remain passive. It cannot grant execution or
restore an obsolete task state. Missing or changing proof leaves the old
result held.
- The query reads only the same company's task and agent, with requests
newer than the old completion time and one selected result. It runs
during active finalization and adds no timer or idle polling.
- Edited comments, cancelled wakes, foreign lineage, source Stop, and
workspace failure are refused. Existing workspace snapshot, stop, and
handoff checks still own physical file recovery.
- Hosted acceptance remains pending deployment through the normal
pipeline.

## Model Used

- OpenAI Codex (GPT-6 family), with code execution and repository tools.
The runtime does not expose the exact serving model identifier or
context window size.

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have searched GitHub for duplicate or related PRs and linked
them above
- [x] I have either (a) linked existing issues with `Fixes: #` / `Closes
#` / `Refs #` OR (b) described the issue in-PR following the relevant
issue template
- [x] I have not referenced internal/instance-local Paperclip issues or
links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip`
URLs)
- [x] My branch name describes the change (e.g. `docs/...`, `fix/...`)
and contains no internal Paperclip ticket id or instance-derived details
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [x] All Paperclip CI gates are green
- [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups
- [x] I will address all Greptile and reviewer comments before
requesting merge

---------

Co-authored-by: Paperclip <noreply@paperclip.ing>
2026-11-06 18:08:17 -06:00
Nicky LeachandClaude Opus 5.5 55244f1e9c test(server): remove two timing flakes in cloud adapter and native cleanup tests (#19668)
## Thinking Path

> - Paperclip is the open source app people use to manage AI agents for
work
> - Contributors wait for PR CI before merge, and a flaky test forces a
re-run of the whole CI run
> - Four server tests failed on 2026-11-06 on commits that passed on a
later attempt
> - Two of them failed because of real slowness inside a fixed time
limit on contended 4-vCPU runners
> - This pull request removes that slowness from the two tests. It does
not raise their time limits
> - Of the other two tests, one is already fixed on master, and one is
not reproduced (see below)
> - The benefit is fewer whole-run re-runs

## Linked Issues or Issue Description

**What happened?**

These tests failed in PR CI and passed on a re-run of the same commit:

- `server/src/adapters/cloud-external-adapters.test.ts` › "Cloud image
adapter boundary › cold boots built-ins…" failed with `Test timed out in
15000ms` (3 times).
- `server/src/__tests__/retained-native-session-cleanup-work.test.ts` ›
"drains a backlog across discovery pages…" failed with `Test timed out
in 15000ms` (2 times).

**Expected behavior**

Both tests pass on a loaded CI runner.

**Steps to reproduce**

1. Run the test file in a 4-CPU container (`docker run --cpus=4
--memory=16g`) with 4 copies at the same time.
2. Before this change, the adapter case fails in 4 of 4 runs at 15,008
to 15,041 ms.

## What Changed

- `cloud-external-adapters.test.ts`: add a `beforeAll` warm-up with a
90-second limit.
- The warm-up imports `registry.js`, `plugin-loader.js` and
`adapter-plugin-store.js` with an empty temporary home and the managed
signal, so it reads and runs no persisted adapter package.
- Before this change, the first case paid the one-time transform of the
whole built-in adapter graph inside its own 15-second budget. In CI the
first case timed out at 15 seconds, and the next case took 1.1 seconds.
- Each case still gets fresh module state from the existing
`vi.resetModules()`. No assertions change.
- `retained-native-session-cleanup-work.test.ts`:
- `flush()` takes an optional poll `interval`, which defaults to 50 ms,
so other tests do not change.
- The backlog test uses 5 ms. The worker admits one cleanup pass per
1-second fake-time step, so 103 entries need 103 polls in a row.
- The next wake is scheduled before a pass releases its idle-work hold,
so a faster poll cannot see a false quiet state. No assertions change.

## Verification

| Test | Before | After |
| --- | --- | --- |
| Adapter cold boot, container, 4 copies | failed 4/4 (15,008–15,041 ms)
| passed 4/4 (537–756 ms per case; the warm-up takes about 23 s) |
| Adapter cold boot, host | failed 2/2 | passed 3/3 (0.6–1.6 s) |
| Backlog drain, container, 4 copies with load | 6.3–6.6 s | 2.0–2.1 s |
| Backlog drain, host, unloaded | 5.1 s | 1.1–1.3 s (5 runs, 29/29 pass)
|

- Final host run of both files with `--maxWorkers=2`: 33/33 pass.
- The backlog test did not reach the 15-second timeout in local runs.
The evidence for that fix is the measured poll-bound cost.

**Not changed in this PR:**

- `connection-management.integration.test.ts` (expected 3 to be 2):
- Cause: a GitHub webhook recovery worker from an earlier test fetched
through the suite-wide fetch spy 60 seconds later.
- Master already fixes this with commit 0b48bc7ac5 (#19541). The failed
jobs ran on bases without that commit.
- `idle-completed-history.test.ts` (runtime service never ready):
- Not reproduced in a 4-CPU container, even with heavy load. CPU load
alone does not explain a child process that stays silent for 10 seconds.
  - A next step is to record spawn-to-listen timing in CI.

## Risks

- The adapter warm-up adds about 1 to 25 seconds to the file's
`beforeAll`, depending on load, but the test body becomes faster by the
same amount.
- If the adapter graph import becomes much slower, the 90-second warm-up
limit shows that as a clear hook timeout.
- Typecheck did not run locally. CI checks it. The edits are a
`beforeAll` import and a numeric default parameter.

## Model Used

- Claude Opus 5.5 (`claude-opus-5-5`) in Claude Code, with tool use and
code execution. A Claude sub-agent found the causes and made the fix,
and the parent session reviewed it.

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have searched GitHub for duplicate or related PRs and linked
them above
- [x] I have either (a) linked existing issues with `Fixes: #` / `Closes
#` / `Refs #` OR (b) described the issue in-PR following the relevant
issue template
- [x] I have not referenced internal/instance-local Paperclip issues or
links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip`
URLs)
- [x] My branch name describes the change (e.g. `docs/...`, `fix/...`)
and contains no internal Paperclip ticket id or instance-derived details
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [x] All Paperclip CI gates are green
- [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups
- [x] I will address all Greptile and reviewer comments before
requesting merge

🤖 Generated with [Claude Code](https://claude.com/claude-code)

Co-authored-by: Claude Opus 5.5 <noreply@anthropic.com>
2026-11-06 16:02:56 -08:00
DottaandPaperclip 6be71028ad Prepare online ephemeral enrollment through signed Cloud control (#19660)
## Thinking Path

> - Paperclip manages agent work through a control-plane web server.
> - A replacement web server needs shared durable data and the original
signing identity.
> - Existing enrollment exports that identity only after a global drain
and offline migration.
> - Online enrollment needs a separate preparation operation while agent
work continues.
> - This change adds a purpose-bound Cloud control operation with
existing data and key owners.
> - The result is an audited preparation receipt, with no permission to
stop agents or detach storage.

## Linked Issues or Issue Description

Refs #19038. Refs #19024.

**What are you trying to improve?**
Allow Cloud to prepare an already migrated tenant for volume removal
without the offline migrator or a global-idle gate.

**What problem does this solve?**
Cloud must preserve the original decision key before starting a
replacement with static ephemeral mode. A tenant session must never gain
key-export authority.

**What would the improvement look like?**
A fresh exact-action Cloud assertion obtains a private, deployment-bound
preparation receipt. Unfinished durable-data migration and invalid
replacement configuration block export.

## What Changed

- Add the signed `ephemeral-enrollment:prepare` control action and a
strict UUID-only POST route.
- Check existing durable-data eligibility and ephemeral configuration
before reading the original key. Never create a missing key.
- Audit only public preparation metadata. Keep HTTP diagnostics
secret-sensitive and the response non-cacheable.
- Bind the receipt to the attempt, stack, build commit, Railway
deployment, time, static mode and key digest.
- Always return `enrollmentReady: false`. Cloud still needs to arm a
replacement, verify old writers have stopped, repeat eligibility and
qualify native handoff before detaching the retained volume.

## Verification

- PASS: 80 focused tests across the preparation owner, signed route,
existing Cloud control, HTTP privacy and OpenAPI route coverage.
- PASS: 2 real PostgreSQL cases. Concurrent copies of one signed request
export once; the durable receipt still rejects reuse after clearing the
process fence. Normal run admission before skill pins is allowed;
missing durable skill installation remains blocked.
- Genuine prepatch RED: the same two PostgreSQL cases exported twice and
rejected ordinary admission. The fixed owner was restored automatically
after the comparison.
- PASS: server TypeScript check with workspace dependencies built.
- Fixed the first CI route-coverage failure by declaring this private
control endpoint in the existing explicit OpenAPI exclusion registry.
- Initial local HTTP execution lacked sandbox socket permission; the
reviewed run passed. Initial PostgreSQL fixtures enabled durable files
too late and reused an issue prefix; those fixture defects were
corrected before the red/green comparison.
- All required CI gates pass on
5346721847. Fresh Greptile review is 5/5
and all review threads are resolved. No deployment, volume detachment,
admission change or agent stop is performed by this PR.

## Risks

- The private response contains the original signing key. Only a fresh
stack-bound assertion for this exact action can obtain it. The Cloud
consumer must pass it directly to its existing vault owner and must not
expose it through admin responses or registry metadata.
- Eligibility is an observation. It cannot replace static writer
restrictions or qualified ownership handoff. This PR deliberately
supplies no detach or readiness authorization.
- Cloud transition integration is still required. This PR alone does not
enroll an instance.

## Model Used

OpenAI Codex, GPT-6 family, with reasoning, code execution and browser
tools. The host does not expose the exact serving model ID or
context-window size.

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have searched GitHub for duplicate or related PRs and linked
them above
- [x] I have either (a) linked existing issues with `Fixes: #` / `Closes
#` / `Refs #` OR (b) described the issue in-PR following the relevant
issue template
- [x] I have not referenced internal/instance-local Paperclip issues or
links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip`
URLs)
- [x] My branch name describes the change (e.g. `docs/...`, `fix/...`)
and contains no internal Paperclip ticket id or instance-derived details
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [x] All Paperclip CI gates are green
- [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups
- [x] I will address all Greptile and reviewer comments before
requesting merge

---------

Co-authored-by: Paperclip <noreply@paperclip.ing>
2026-11-06 18:00:28 -06:00
DottaandClaude Opus 5.5 e89be6ee83 fix(native): re-bootstrap a runner that a graceful drain suspended during bootstrap (#19665)
## Thinking Path

> - Paperclip is the open source app people use to manage AI agents for
work
> - Native runs start a local `paperclip-runnerd` process. The control
plane keeps a durable state root for each session.
> - After a restart, recovery gives a run with no provider evidence the
`bootstrap_incomplete` disposition. The executor quarantines the old
root and starts the bootstrap again, but only when the root proves that
no provider work started.
> - #19524 made that proof accept a root killed after `run.prepare` and
before `session.open` (a hard kill).
> - A graceful restart (SIGTERM) leaves different shapes. The drain
sends `runner.drain` and `runner.suspend`, and the kill can land just
after `session.open` failed or just after it started a fresh session.
The proof refused both shapes. The run failed with
`runner_state_identity_mismatch: bootstrap_not_proven_incomplete`,
although no turn was ever sent.
> - This pull request extends the proof to both drain shapes and keeps
provider work fail-closed.
> - The benefit is that a graceful restart during native bootstrap
continues automatically.

## Linked Issues or Issue Description

Refs #19524

**What happened?**
Restart chaos waves (ACPX Claude, K2 graceful restart about 10 s after
the run started) failed with `adapter_failed` and
`runner_state_identity_mismatch: bootstrap_not_proven_incomplete`.
Startup recovery chose `bootstrap_incomplete`, and the executor proof
refused the state root. Two real roots were kept:

1. `session.open` failed (the ACPX sidecar timed out), then
`runner.drain` completed and `runner.suspend` completed. There was 1
connection, no committed or acknowledged event, an empty runner outbox,
and `nextSourceSeq: 1`.
2. `session.open` completed with a freshly started session (`status:
"started"`). The committed events were only `session.started`,
`session.capabilities.updated` and `session.goal.snapshot`, and the
runner outbox held one `harness.diagnostic` (the sidecar process). No
turn command existed, and the sidecar process had exited. The database
had not yet recorded the session events, so the classifier saw no
provider evidence.

**Steps to reproduce**
1. Start an ACPX Claude task on a local runner.
2. Send SIGTERM to the control plane about 10 s after the run starts,
before the first turn.
3. Let the control plane restart.

**Expected behavior**
Recovery starts the bootstrap again, and the task continues without a
user action.

**Actual behavior**
The run fails and the task stops.

## What Changed

- `native-bootstrap-proof.ts`, pre-session proof: a `session.open` that
is pending or `failed` is now accepted, as are the runner lifecycle
commands `runner.drain`, `runner.suspend` and `runner.shutdown` in any
state. The controller journal and the runner journal must both agree.
Any committed or acknowledged event, any turn command, a completed
`session.open`, and any queued runner event still fail closed.
- New `runnerdStateIsOpenedSessionBeforeTurn`. It accepts a completed
`session.open` only when all of these are true:
  - the session was freshly started (`status: "started"`, not resumed);
- the commands are only `run.prepare`, `session.open` and runner
maintenance commands;
- every committed event and every event in the runner outbox is a
session setup or runner lifecycle event;
  - `ackedSourceSeq` equals the count of committed events, with no gap;
  - the runner journal is present;
  - every recorded provider process ID has exited on this host.
- `native-session-executor.ts`: the executor applies the opened-session
proof only for a local execution target. Remote runners stay fail-closed
for that shape, because their process IDs belong to another host. The
remote checkpoint classifier still reads only commands 1 and 2.

## Verification

- Red before the fix: "allows a fresh bootstrap after a drain suspended
a runner whose session.open failed" and "allows a fresh bootstrap after
a drain that landed between session.open and the first turn" both failed
with `expected false to be true`. Green after the fix: the `native
incomplete-bootstrap evidence` block passes 32/32.
- Fail-closed counter-tests:
  - completed `session.open`;
  - committed event, acknowledged event, or queued runner event;
  - turn command, `turn.stop`, or a turn processed by the runner;
  - `turn.started` or `provider.event`;
  - resumed session;
  - compacted events;
  - no recorded provider process;
  - missing runner journal;
  - live provider process;
  - remote runner.
- I ran the new proof read-only against the three real kept roots: the
K1 root from #19524, the K2 `session.open` failed root and the K2
opened-session root. All three return `true` for a local runner. The
opened-session root returns `false` when the processes are on another
host.
- `native-session-executor.test.ts` and
`native-restart-recovery.test.ts` filtered to bootstrap, restart, remote
and drain: 333 passed.
`native-runner-restart-recovery.integration.test.ts` and
`native-bootstrap-retry.integration.test.ts`: 106 passed. `tsc --noEmit
-p server/tsconfig.json` passes.
- Live restart chaos replay: see the PR comment.

## Risks

- After a `session.open` failure or timeout, the provider sidecar might
have created an empty session. No turn command was sent, so no provider
work can repeat.
- An opened session before any turn is discarded, and a new one is
started. The proof requires a fresh `started` session, so no earlier
conversation is lost. Resumed sessions stay fail-closed.
- The opened-session proof is local only. It requires every recorded
provider process to be gone, so a live provider process blocks it.
- Out of scope: the Retry offer when the proof fails legitimately
(RC-05/06).

> For core feature work, check [`ROADMAP.md`](ROADMAP.md) first and
discuss it in `#dev` before opening the PR. Feature PRs that overlap
with planned core work may need to be redirected — check the roadmap
first. See `CONTRIBUTING.md`.

## Model Used

- Anthropic Claude Opus 5.5 (`claude-opus-5-5`), used through Claude
Code with tool use (shell, file edits, test execution). Default context
window. Extended reasoning was available.

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have searched GitHub for duplicate or related PRs and linked
them above
- [x] I have either (a) linked existing issues with `Fixes: #` / `Closes
#` / `Refs #` OR (b) described the issue in-PR following the relevant
issue template
- [x] I have not referenced internal/instance-local Paperclip issues or
links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip`
URLs)
- [x] My branch name describes the change (e.g. `docs/...`, `fix/...`)
and contains no internal Paperclip ticket id or instance-derived details
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [x] All Paperclip CI gates are green
- [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups
- [x] I will address all Greptile and reviewer comments before
requesting merge

🤖 Generated with [Claude Code](https://claude.com/claude-code)

Co-authored-by: Claude Opus 5.5 <noreply@anthropic.com>
2026-11-06 17:55:47 -06:00
DottaandPaperclip 9197abf673 fix(native): preserve controller state when remote archiving fails (#19663)
## Thinking Path

> - Paperclip is the open source app people use to manage AI agents for
work.
> - Native continuity replacement must preserve the state needed to
recover saved work.
> - The current replacement moves local controller files before it knows
whether the remote archive succeeded.
> - A remote failure then leaves the local controller without its
recovery files.
> - This pull request confirms the remote archive before it moves those
files.
> - A user turn that never started can use the existing bounded Retry
path after verified preservation and cleanup.
> - The task retains its saved work and can continue once under current
user authority.

## Linked Issues or Issue Description

Refs #19638, #19547, #19399 and #19659.

The prerequisite #19638 merged as
`0819f4ea78dd37fba87341b314be9dac078c1410`. This PR now targets master.
A normal dependency integration at `febed950f4` keeps only the six-file
archive repair in the PR diff. Fresh master-based CI and review are
required before merge.

**What happened?**

A native continuity replacement moved its local controller journal and
provider checkpoint. The following remote archive failed. A later
recovery attempt could no longer read the local recovery files. The
first-attempt failure also had no normal Retry receipt for the saved
user turn.

**Expected behavior**

A failed or timed-out remote archive retains the local recovery files
and starts no replacement provider. A user turn that has not started can
request one normal Retry. The existing user, provider-turn, Stop,
preservation, cleanup, budget and approval gates remain in force.

**Steps to reproduce**

1. Keep a local controller journal and provider checkpoint for a
retained remote conversation.
2. Request continuity replacement and fail or time out the remote
archive command.
3. Check the local controller files before any later recovery.
4. Settle the native failure under a current user wake and recover the
saved workspace.

## What Changed

- Confirm remote continuity archiving before moving the local controller
state.
- Add the exact remote archive failure to the shared bounded user Retry
admission from #19638.
- Verify failed, timed-out and successful archive ordering with real
local files.
- Verify ordinary failure settlement and saved-file recovery produce one
fresh successor. Keep Stop, system wake and unsettled-provider holds.
- Document the file preservation and Retry contract.

## Verification

- RED: failed and timed-out remote archives removed the local controller
files. Reading those files failed with ENOENT. The saved-user Retry
request returned false instead of true.
- Initial archive unit verification: eight cases passed, including the
three archive outcomes and five existing Cloud archive safety cases.
- Initial stacked revision: `9104ee399b`, based on #19638 at
`d22d8f9d5ee3dc36550a94d55c1d8376f3b9aab2`.
- Final master-based revision: `febed950f4`. All 13 affected cases
passed across three Vitest files after dependency integration. They
include the seven-mode real PostgreSQL completion case, saved-file
successor and negative-hold cases, and real-file archive outcomes. All
seven server typecheck layers passed again. Module boundary, whitespace
and added-code-comment checks passed. All required CI passed on this
exact head. The final snapshot has 59 successful checks, three intended
skips, one neutral result, and no pending or failed checks. Current-head
Greptile and the independent review are both 5/5, with no open findings.
- Final local revision: `9104ee399b`, macOS ARM64, Node 26.4.0, pnpm
9.15.4 and embedded PostgreSQL. The three real-file archive outcome
cases passed. The real PostgreSQL completion test passed all seven
internal scenarios, including archive failure, prior provider activity,
system wake, Stop before and after terminal settlement, and stale
runtime promotion. Own Runner/shared/SDK builds and all seven server
typecheck layers passed. Nine saved-work continuation and negative-hold
cases passed. They verify exported file contents, one user-attributed
fresh successor, idempotent hooks, no second automatic chain, and
first-use manual Retry for held cases.
- `node scripts/check-module-boundaries.mjs`, whitespace checks and the
added-code-comment audit passed.
- Focused commands from `server/`: Vitest with `-t 'retains the local
controller checkpoint until remote continuity archiving succeeds'`; `-t
'replays saved user intent through normal Retry'`; and `-t 'continues a
user turn once|does not continue automatically'`. PostgreSQL cases used
a fresh local cluster and a 120-second setup hook budget. Application
timeouts were unchanged.
- The initial stacked head passed all test, build, typecheck and E2E
jobs. Greptile and the independent review both scored it 5/5 with no
findings. These results do not replace the fresh master-based
qualification now running.

## Risks

- A remote command can fail after it changed remote state. This change
retains local evidence in that case. It does not claim a distributed
atomic transaction.
- The exact archive error can request one normal Retry only under the
existing saved-user admission. The normal path must prove stop, saved
files and cleanup before a successor starts.
- The protected launch-argument rejection remains enforced. Its exact
hosted argument difference was not available through ordinary access.
#19659 separately addresses a saved-thread feature-policy argument
difference. This PR preserves local archive evidence and does not claim
direct hosted verification of that primary cause.

## Model Used

OpenAI GPT-6 family through Codex, with reasoning, tool use and code
execution. The model is inherited; no override was used. The exact
serving model ID and context-window size are not exposed by this
runtime.

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have searched GitHub for duplicate or related PRs and linked
them above
- [x] I have either (a) linked existing issues with `Fixes: #` / `Closes
#` / `Refs #` OR (b) described the issue in-PR following the relevant
issue template
- [x] I have not referenced internal/instance-local Paperclip issues or
links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip`
URLs)
- [x] My branch name describes the change (e.g. `docs/...`, `fix/...`)
and contains no internal Paperclip ticket id or instance-derived details
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [x] All Paperclip CI gates are green
- [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups
- [x] I will address all Greptile and reviewer comments before
requesting merge

---------

Co-authored-by: Paperclip <noreply@paperclip.ing>
2026-11-06 17:52:12 -06:00
DottaandPaperclip 1c29992171 Observe workspace service failures before asynchronous startup work (#19624)
## Thinking Path

> - Paperclip is the open source app people use to manage AI agents for
work.
> - Workspace runtime services start local child processes and wait for
readiness.
> - The runtime must return startup failures through its normal error
and cleanup path.
> - A child can fail while asynchronous log or registry work is pending.
> - The previous code attached child listeners too late, or rejected
promises before the readiness race observed them.
> - This pull request records the child failure immediately and delivers
it when the readiness race can observe it.
> - The benefit is a preserved startup error without a process-wide
unhandled rejection.

## Linked Issues or Issue Description

**What happened?**

A real child that exits during a pending registry write produces an
unhandled rejection. A spawn error during a pending log close loses the
original error and reaches the readiness timeout instead. This caused
the General server 8/12 CI shard for #19576 to fail after all 2,285 test
assertions passed.

**Expected behavior**

The startup operation returns the original child failure, removes its
registry record, and produces no global unhandled rejection.

**Steps to reproduce**

Run the new readiness test against the base revision. It starts a real
exit-1 shell while holding the registry write through child close. It
also starts a missing shell while holding log close through the spawn
error. The two behavioral checks fail before the production change.

**Paperclip version or commit**

da9a4cb96c, before this change.

## What Changed

- Register child error and close listeners directly after spawn, before
the first asynchronous boundary.
- Keep the observed failure as a resolved outcome until the readiness
race attaches. The race then rejects through the existing cleanup path.
- Add real-process regressions for both asynchronous windows. Check the
original error, no global unhandled rejection, process exit, and
registry removal.

## Verification

- Behavioral RED before production edits: two actual subprocess cases
failed on the original code. A fast child exit while registry
publication was held emitted an unhandled rejection; an ENOENT spawn
while log close was held lost its original error and reached readiness
timeout.
- Final GREEN at `322ef0d21b3cd1811913bb5e15f47355ad5fa449`: six
affected files, 72 passing tests and three existing platform skips
(149.20s). Coverage includes both real failure windows, original
operation errors, zero global unhandled rejections, child exit and
registry cleanup, ordinary startup/stop, EADDRINUSE classification,
bounded timeout/lease guards, six model fixtures and all 15 Slack owner
cases.
- All seven server typecheck layers, module-boundary and whitespace
checks pass. Required preflight passes in 20.979s. The final diff
contains only the two readiness owner/test files; no new code comments
were added.
- [Final-head
CI](https://github.com/paperclipai/paperclip/actions/runs/42311878548):
56 successful checks, four intentional skips, no failures or pending
checks. Required E2E and verify aggregates pass. Greptile reviewed this
exact head at 5/5 with no unresolved findings.
- The valid review finding about a late test subscription is fixed: the
real spawn wrapper captures settlement before returning the child. The
resolved thread and final test both preserve the original lifecycle
oracle.
- Prior inherited CI failures were repaired through normal merges of
existing fixes: #19628 (duplicate workflow defaults), #19610 (model
expectations), #19627 (deterministic Slack deadline fixture), and #19646
(current Runner lane flags). All four exact `--package-lane=1/3`, `2/3`,
`3/3`, and `--native-server` dry runs and the lane-inventory regression
pass. No CI job was replayed, timeout weakened, or production assertion
changed to accommodate those failures.
- Local environment: macOS arm64, Node 26.4.0, pinned pnpm 9.15.4,
Vitest 5.0.3. Subprocess and loopback checks ran with the required local
permissions. These checks do not claim a hosted deployment or full
browser acceptance.

## Risks

- Low risk. Child failures now become observable earlier. The existing
readiness failure, timeout, collision classification, and cleanup owners
remain in place.
- The tests hold real filesystem boundaries through real child events.
They do not model a full hosted deployment.

## Model Used

- OpenAI Codex (GPT-6 family), with code execution and repository tools.
The runtime does not expose the exact serving model identifier or
context window size.

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have searched GitHub for duplicate or related PRs and linked
them above
- [x] I have either (a) linked existing issues with `Fixes: #` / `Closes
#` / `Refs #` OR (b) described the issue in-PR following the relevant
issue template
- [x] I have not referenced internal/instance-local Paperclip issues or
links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip`
URLs)
- [x] My branch name describes the change (e.g. `docs/...`, `fix/...`)
and contains no internal Paperclip ticket id or instance-derived details
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [x] All Paperclip CI gates are green
- [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups
- [x] I will address all Greptile and reviewer comments before
requesting merge

---------

Co-authored-by: Paperclip <noreply@paperclip.ing>
2026-11-06 17:50:22 -06:00
c82211251b test(chat): cover Slack forwarding deadlines through registered owners (#19348)
## Thinking Path

> - Paperclip is the open source app people use to manage AI agents for
work.
> - People answer agent questions through Slack commands, buttons, and
forms.
> - Slack requires a response within three seconds. A modal trigger also
expires after three seconds and can be used once.
> - Durable event delivery does not prove these synchronous response
paths.
> - This pull request exercises the registered app owners and pinned SDK
with original signed requests and controlled forwarding delays.
> - The tests record deadline failures without clearing invalid forms,
extending triggers, or changing production behavior.

## Linked Issues or Issue Description

Refs #19019, which has merged. This PR now targets `master`.

Related work: #8300 handles raw-body capture and plugin event fan-out.
#19328 handles Slack connection onboarding. This PR changes neither
path. I searched related open and closed work and read those PR bodies
and changed paths.

**What happened?**
A forwarding delay can leave an authenticated Slack callback too late to
acknowledge a command, exchange a modal trigger, or return field errors.
The existing direct modal test did not cover the normal registered
ingress or these provider deadlines.

**Expected behavior**
Tests must distinguish useful app persistence from a response that Slack
can still accept. They must preserve current authorization, field
validation, original signatures, and exactly-once effects.

**Steps to reproduce**
Use an owned PostgreSQL test database and the repository launcher below.
Run warm first. The default run adds one real 3500ms delay independently
before command, form-open action, and invalid submission forwarding.

**Paperclip version or commit**
Production remains byte-identical to
`54fa701d41b4ced62f4ff338d39b946015670ae3`. This test-only candidate is
`a3cce4e9868fd3e6e25d9df7d0090899bdf6a204`. It adds a recovery-fixture
setup guard after `dac0010649c435f673172c496b3383e99780e8bf`.

**Deployment mode**
Source-checkout integration test with real PostgreSQL, registered app
owners, and the pinned Slack SDK. Provider API responses and the
heartbeat receipt helper are controlled fixtures. No Slack account,
model process, deployment, or physical tenant suspension was tested.

## What Changed

- Route original signed command, action, and modal requests through the
normal chat service and real SDK runtime.
- Check forged-signature refusal, callback evidence, current-role
refusal, invalid-field errors, one corrected answer, and duplicate
fencing.
- Intercept the pinned SDK HTTP transport. Model trigger expiry and
one-use exchange without changing request timestamps or signatures.
- Observe the real platform exception through the actual bound
`views.open` callable. Delegate once and rethrow the same error.
- Restore the network guard after every setup failure. Attempt all owned
cleanup and preserve the original error before any cleanup errors.
- Guard auxiliary database cleanup when recovery test setup fails before
it creates a client. Keep temporary-cluster cleanup reachable and
preserve the original setup error.
- Add a repository launcher with the current prewire guard, one worker,
explicit test-database validation, and closed warm-only and
action-delayed-only selectors. The default still selects all four cases.

## Verification

- Current candidate `c6ae7957988e220ea096ab678f070d3bd1c5f9c0` normally
merges fetched master `8621bcf53ee2e4bbefb7d193add42dd544ca06e8`. All
three owned protocol/recovery acceptance files are byte-identical to the
preceding head. All other paths exactly match master. The shared Runner
default test conflict uses master's independently landed constant-based
repair. That supersedes this branch's temporary two-literal repair; no
fourth file remains in the PR diff.
- Original CI server4/12 had two stale `gpt-5.6-sol` expectations after
the normal default changed to `gpt-6.1-sol`. The complete failure log is
retained. Before the master repair landed, the focused two-literal
correction passed the whole six-case file with explicit-model,
non-Codex, lifecycle, permission and skill checks intact. That local
result is source-specific; it is not a fresh full merged-tree pass.
- The original guard-leak counterfactual reproduced unrestored global
network functions after setup rejection. The repaired callback passed
four controlled cleanup diagnostics. Cleanup attempts each initialized
owner and restoration even after a failure. It preserves the primary
error first and retains separate cleanup errors.
- A fresh registered SQL/SDK warm case passed on the qualified protocol
source with one persisted answer, 17.15 seconds total and normal
original assertions. Final independent SQL and recorded PID/group audits
were empty. A diagnostic sampler initially hit EPERM, and the worker
exit guard line was absent; those limits remain explicit. The cleanup
diagnostics are local qualification tools, not four newly checked-in CI
tests.
- Delayed modes remain explicit diagnostic commands. Ordinary CI runs
warm. Earlier mode results do not establish a final-source four-case
single-command pass. The provider transport is controlled; no live Slack
display, deployed sleep or wake result is claimed.
- The original server6/12 cleanup-backlog case hit its 15-second
whole-case timeout. Its phase and cause remain unknown. The original E2E
shard received runner shutdown without an assertion verdict. Complete
original logs are retained; neither failure has been labeled a flake or
repaired by extending a deadline.
- Own offline dependency setup passed with an unchanged lockfile. An
omitted private guard dependency initially prevented test entry; that
setup failure is retained separately from product results. The immutable
helper closure corrected it. No local full-repository
typecheck/build/test pass is claimed. Fresh exact-head CI and complete
edited bot reviews are required before merge.

## Risks

This is a test-only change. It changes no production code, credential
flow, schema, API, or sleep eligibility. The existing large integration
fixture remains large; this PR does not cross a file from below 1000
lines to above it and adds no code comments.

The provider transport is synthetic. The tests demonstrate deadline
consequences and app persistence, not that Slack displayed a late
response. They do not make commands or open forms safe while the tenant
sleeps. Other Slack lanes and persistent transports remain open work. CI
may expose additional harness assumptions.

The roadmap's Apps and Connections work is unchanged. This focused
regression complements the existing integration; it adds no separate
feature or provider setup path.

## Model Used

OpenAI, configured model `gpt-6.1-sol` in Codex. The exact served
backend revision and context window are not exposed. Assistance used
reasoning, source inspection, Git, native TypeScript checks, and
controlled integration tests. A coordinating GPT-6-family agent reviewed
boundaries and evidence.

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have searched GitHub for duplicate or related PRs and linked
them above
- [x] I have either (a) linked existing issues with `Fixes: #` / `Closes
#` / `Refs #` OR (b) described the issue in-PR following the relevant
issue template
- [x] I have not referenced internal/instance-local Paperclip issues or
links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip`
URLs)
- [x] My branch name describes the change (e.g. `docs/...`, `fix/...`)
and contains no internal Paperclip ticket id or instance-derived details
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [x] All Paperclip CI gates are green
- [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups
- [x] I will address all Greptile and reviewer comments before
requesting merge

---------

Co-authored-by: Paperclip <noreply@paperclip.ing>
Co-authored-by: Codex <noreply@openai.com>
2026-11-06 17:41:04 -06:00
DottaandPaperclip 0819f4ea78 fix(native): verify controller ownership before retrying saved turns (#19638)
## Thinking Path

> - Paperclip is the open source app people use to manage AI agents for
work.
> - Native task turns can keep a provider conversation from an earlier
run.
> - A copied conversation checkpoint names the new run before its
controller has attached.
> - A failed attachment can make recovery treat that copied identity as
current execution authority.
> - The current run needs its own durable controller checkpoint, or a
valid staged attachment, before exact resume.
> - This pull request checks that ownership and uses the normal Retry
path to continue a saved user turn after verified cleanup.
> - The task can continue once with its saved work and history.

## Linked Issues or Issue Description

Refs #19399 and #18860.

**What happened?**

A new user comment resumed a completed native conversation. The retained
runner process was gone before the new controller attached. The new run
still had a copied provider session ID. Recovery selected exact resume
for that new run and then failed its unchanged owner and lease checks.
Ordinary first-attempt failure settlement also omitted the saved-user
Retry handoff that restart recovery already uses.

**Expected behavior**

Exact resume requires current controller evidence. A saved user turn can
request one normal Retry after this infrastructure failure. The normal
path must verify provider stop, saved files, current user authority and
all execution gates before it starts a fresh session.

**Steps to reproduce**

1. Finish a native warm run and retain its provider checkpoint.
2. Admit a user comment as a new run and copy the provider checkpoint
through the real resume producer.
3. Stop the retained runner before attachment. The real remote process
check reports that the process is not running.
4. Observe that the copied provider ID selects exact current-run resume.
Observe that ordinary failure settlement saves no Retry request.

## What Changed

- Check a bounded encrypted controller header for fenced remote Runner
recovery. Keep local Runner recovery on its existing disk-backed path.
Match the run, conversation and runner identity. Preserve the existing
staged-attachment path.
- Share the existing saved-user Retry admission between restart recovery
and ordinary terminal native settlement. Keep its exact infrastructure
errors, user wake, comment, provider-turn and retry-chain checks.
- Add real PostgreSQL and stopped-process regressions. Verify malformed
and foreign checkpoint holds, current-owner resume, user authority and
Stop. Verify saved-file recovery creates one fresh-session successor.
- Document the ownership and Retry contract.

## Verification

- RED: the real checkpoint rebind producer and stopped-process check
selected exact current-run resume without a current controller
checkpoint.
- RED: ordinary settlement created zero Retry receipts for the real
native failure code; expected one.
- Review RED: a real current local controller file existed with no
database checkpoint rows. The initial gate returned ambiguous state. The
fix takes a required trusted execution-target kind and applies the
database requirement only to the remote persistence path.
- Initial local revision: `3662055880ccf8e09c3c50a340897e16c78627e7`,
macOS ARM64, Node 26.4.0, pnpm 9.15.4, embedded PostgreSQL.
- Initial server Vitest: 42 selected cases passed across controller
recovery integration, remote restart adoption, ordinary run completion
and retained workspace recovery. The cases cover the stopped-process
producer, current/foreign/malformed ownership, automatic user
continuation, Stop, unsettled turns, system wakes and a manual Retry on
first use.
- `pnpm --filter @paperclipai/server typecheck`: passed with this
worktree's Runner, shared and SDK builds and all seven server layers.
- `node scripts/check-module-boundaries.mjs`, whitespace checks and the
added-code-comment audit: passed.
- Review correction: `8c795e2e0e44b5209da3e228593c5cd35e948cae`. The
real local/remote controller case passed against a fresh PostgreSQL
cluster. It verifies local disk recovery without database rows, remote
current-owner resume, and remote missing/foreign/malformed holds. Fresh
`node scripts/typecheck-layers.mjs` passed all seven server layers. The
existing offline chat reader now requests metadata only and retains its
full independent native-state safety check.
- A broader local recheck hit PostgreSQL setup/cleanup hook timeouts.
These are retained as failed setup attempts; the fresh-cluster
regression above passed. Required CI supplies broad final-head coverage.
- Settlement-order correction:
`dafb721c3bbb7ae86fbc3c9c6c953ace29ca088b`. The real PostgreSQL
regression first proved both failures: Stop after an already-failed row
created one Retry instead of zero; a DB-native promotion with an old
legacy caller snapshot created zero instead of one. All six settlement
scenarios now pass. The hook requires the local failed outcome and the
canonical settled native row. Fresh seven-layer server typecheck passed
again.
- Required shared fixture base integrated at
`d22d8f9d5ee3dc36550a94d55c1d8376f3b9aab2`. The six runner-skills
fixture cases and all seven server typecheck layers passed. Required CI
passed for this head:
[workflow](https://github.com/paperclipai/paperclip/actions/runs/42309419592),
including all server layers, tests, build, Runner verification and E2E.
The final snapshot has 57 successful checks, three intended skips and
one neutral result. Current-head Greptile is 5/5; both concrete review
threads are resolved. The independent re-review ended without a final
response; its prior Stop finding has a real RED/GREEN repair.

The focused command was run from `server/`:

```sh
../node_modules/.bin/vitest run --config vitest.config.ts src/services/heartbeat/run-completion.test.ts src/services/native-runtime/native-controller-recovery.integration.test.ts src/services/native-runtime/native-session-executor.test.ts src/services/workspace-recovery.test.ts -t 'replays saved user intent|does not assign current-run resume authority|remote controller restart adoption|continues a user turn once|does not continue automatically'
```

## Risks

- A terminal failure of a fenced Runner adds one exact-run header read.
The read selects one encrypted header and limits inspection to 1 MiB.
Invalid or missing ownership evidence stays held.
- Saved user input can request one automatic Retry. It uses normal
preservation, current authorization, budget, approval, Stop and cleanup
gates. Unsettled provider turns and system wakes do not start an
automatic successor.
- This PR changes no provider process, credential, model or lease
authority checks.

## Model Used

OpenAI GPT-6 family through Codex, with reasoning, tool use and code
execution. The model is inherited; no override was used. The exact
serving model ID and context-window size are not exposed by this
runtime.

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have searched GitHub for duplicate or related PRs and linked
them above
- [x] I have either (a) linked existing issues with `Fixes: #` / `Closes
#` / `Refs #` OR (b) described the issue in-PR following the relevant
issue template
- [x] I have not referenced internal/instance-local Paperclip issues or
links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip`
URLs)
- [x] My branch name describes the change (e.g. `docs/...`, `fix/...`)
and contains no internal Paperclip ticket id or instance-derived details
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [x] All Paperclip CI gates are green
- [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups
- [x] I will address all Greptile and reviewer comments before
requesting merge

---------

Co-authored-by: Paperclip <noreply@paperclip.ing>
2026-11-06 17:31:23 -06:00
DottaandPaperclip bb621880e6 fix(storage): preserve agent and skill files during online conversion (#19656)
## Thinking Path

> - Paperclip is the open source app people use to manage AI agents for
work.
> - Agent files and installed skills need durable storage before a
legacy volume can be removed.
> - Their maintenance commands currently require every writer to stop.
> - Normal file edits already use agent row locks and skill publication
locks.
> - Shared agent heads also remain durable while their agents run.
> - This pull request uses those owners to copy settled files online and
keeps unresolved recovery states intact.
> - The benefit is useful migration progress while unrelated work
continues.

## Linked Issues or Issue Description

Related: #19642.

**What happened?**

Agent-file adoption and skill installation conversion reject apply
requests without a global stopped-writer acknowledgement. Agent-file
maintenance also reports an active agent as blocked when its shared head
is already durable. Live enrollment omits the existing
unresolved-local-instruction-copy guard.

**Expected behavior**

Copy settled agent files and skill installations under their existing
writer locks. Keep old skill directories, versions, and inline bytes.
Keep unresolved local copies and unknown historical pin obligations
visible to their owners.

**Steps to reproduce**

Run agent-file maintenance with `--apply` on the original host with
durable storage enabled. A managed agent without active execution is
rejected without `--writers-stopped`. The same gate rejects skill
installation conversion. An agent that already has a shared head is also
reported as blocked while it runs.

## What Changed

- Adopt settled agent files under the existing agent row lock. Recognize
an existing shared head before checking active execution, without
rewriting its projection.
- Reuse the local working-copy preservation predicate for first adoption
and live enrollment. Keep its original public export.
- Prepare skill uploads outside the shared run-pinning lock. Verify the
exact local tree and source identity under the cache, slug, and row
publication locks. Publish catalog origin history in that same
transaction.
- Retain old skill directories, versions, and inline bytes. Keep pin
retention and volume-removal guards unchanged.
- Add PostgreSQL and filesystem coverage for active durable heads,
unresolved copies, concurrent source edits, and linked files. Update the
maintenance docs.

## Verification

- Agent-file durability and live enrollment suites: 16 tests passed with
real PostgreSQL and filesystem fixtures.
- Managed skill suite: 22 tests passed. Seven final controls also
passed: upload-time file edits, source relocation, unknown historical
pins, hard-linked files, pinning during a blocked upload, and both
rejected/successful catalog-origin publication.
- Server source typecheck and focused changed-test typecheck passed.
- Module boundaries, diff whitespace, and added-line
credential/internal-reference scans passed.
- Baseline production rejected both online paths at their stopped-writer
guards. Review regressions also reproduced a busy pinning lock during
upload and extra catalog history after rejection; their fixes passed
real PostgreSQL controls. All expected red results are preserved.
- One final-control attempt failed the existing 30-second fixture
startup hook before executing tests. A sequential retry passed all four
controls without changing guards or timeouts; the failed attempt remains
recorded.
- Exact head `001a5beed9d0e55c7c178906fbad1f9a47f87788`: [required CI
passed](https://github.com/paperclipai/paperclip/actions/runs/42309446426),
including typecheck, build, tests, Runner and end-to-end gates. Greptile
completed successfully at 5/5 with zero unresolved review threads;
GitHub reports mergeable/clean.

## Risks

Changed or unsafe sources remain blocked. Storage failures keep the
original files and recovery state. This conversion does not settle
retained provider copies or historical execution. Unknown pin
obligations still block retention and volume removal; this PR alone does
not qualify removal of the original volume.

## Model Used

OpenAI GPT-6 (Codex). The runtime did not expose a more specific backend
model ID or context-window size. Used reasoning, code editing, and tool
execution.

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have searched GitHub for duplicate or related PRs and linked
them above
- [x] I have either (a) linked existing issues with `Fixes: #` / `Closes
#` / `Refs #` OR (b) described the issue in-PR following the relevant
issue template
- [x] I have not referenced internal/instance-local Paperclip issues or
links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip`
URLs)
- [x] My branch name describes the change (e.g. `docs/...`, `fix/...`)
and contains no internal Paperclip ticket id or instance-derived details
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [x] All Paperclip CI gates are green
- [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups
- [x] I will address all Greptile and reviewer comments before
requesting merge

---------

Co-authored-by: Paperclip <noreply@paperclip.ing>
2026-11-06 17:31:04 -06:00
DottaandPaperclip bee0f0e2fa fix(server): recognize recoverable result finalization during upgrades (#19651)
## Thinking Path

> - Paperclip is the open source app people use to manage AI agents for
work.
> - Native execution saves an accepted result before it finishes
workspace export and status projection.
> - The upgrade report currently recognizes only a live execution in the
observed phase.
> - A durable accepted result can therefore block an upgrade after its
execution lease is released.
> - Existing finalization owners already resume that saved work with
task binding, physical worker stop proof, and an atomic owner claim.
> - This pull request lets the report inspect those existing contracts
without taking authority.
> - Qualified remote work can continue through a normal server
replacement.

## Linked Issues or Issue Description

Refs #18037 and #19596.

**What happened?**

An accepted remote native result remains in result acceptance, workspace
finalization, retry, or committed projection. The upgrade report marks
it blocking because it is no longer a result-less observed execution
with a live execution lease.

**Expected behavior**

Report a saved result as recoverable only when the existing replacement
owners can resume it. Preserve all task, result, contract, remote
workspace, provider lease, physical owner, decision, and workspace
barrier checks. Keep unsupported or unknown work blocking.

**Steps to reproduce**

Run the new PostgreSQL post-result readiness fixture. It persists a real
encrypted Runner header and an accepted terminal result with a bound
remote workspace. The unchanged report returns one blocker.

**Paperclip version or commit**

Regression base: ee6c101854. Related shutdown recovery is in #19596.

## What Changed

- Delegate saved-result eligibility to the native finalization owner.
- Require the accepted terminal result and contract, current task
binding, remote authority, retained provider lease or successful
workspace receipt, and a supported physical worker identity.
- Require an applied decision and assessment for committed projection.
Keep finalizer leases beyond the supported outage budget blocking.
- Reuse the existing result recovery binding with selected metadata. Do
not load complete run or result payloads for the new observation.
- Keep real signed stop verification, owner compare-and-swap, retry
deadlines, and actual finalization with their existing owners.
- Share a two-second scheduling budget across saved-result inspections,
leaving unchecked candidates blocking after the budget expires.
- Add PostgreSQL, encrypted-header, signed stop-proof, competing-owner,
projection, and independent-work cases. Clarify the operator contract.

## Verification

- The valid accepted-result fixture reproduced the original blocking
report, then passed with this change.
- The initial eight post-result cases passed against PostgreSQL. They
include a real Ed25519 stop receipt, the existing verifier, a competing
PostgreSQL ownership claim, one copyback, and receipt reuse.
- Seventeen focused existing PostgreSQL shutdown and workspace ownership
cases passed.
- A broader five-file run passed 91 cases. Its one failure was an
invalid negative fixture: PostgreSQL correctly refused a contract change
protected by the accepted-result foreign key. The test now asserts that
refusal.
- A subsequent standalone run timed out in PostgreSQL bootstrap before
tests ran. The final run used the existing shared PostgreSQL command and
isolated per-suite template databases: all 92 tests passed across five
files (159.95 seconds). It covers both readiness suites, platform stop
proof, workspace finalization, and graceful shutdown. That scope passed
on `ce4e3995b6`. A follow-up restricts provider leases to the active
status and adds released/unknown-status controls. The new fixture now
uses the existing PostgreSQL bootstrap timeout constant. The affected
eight-case rerun passed on `850859b44d`. The explicit configured-stack
guard also passed its six platform-proof cases. Broad local source
typecheck still has stale borrowed dependency declarations; fresh CI
supplies that coverage.
- Review's locked-query regression reproduced RED: three saved-result
candidates took 6.081 seconds. With the shared scheduling budget, both
readiness suites passed all 16 cases (49.36 seconds) on final code
committed as `70b0b7b8f7`. The lock case leaves all three candidates
blocking, releases its connection, and observes all three as recoverable
after the lock is released.
- Greptile reviewed final `70b0b7b8f7` at 5/5 with no open threads.
Current-head CI typecheck, build, tests, and native review are pending.
No hosted replacement or enrollment acceptance is claimed.

## Risks

A false positive could select an unsafe upgrade. Missing evidence and
read errors remain blocking. Readiness does not stop admission, detach
an agent, acquire a lease, request a stop receipt, or authorize
takeover. The replacement still verifies physical stop and rechecks
current task ownership before copyback. Saved results retaining a
previous controller boot remain conservatively blocking, including
finalizers resumed by a later boot. This PR does not change enrollment
policy or migrate data.

## Model Used

OpenAI GPT-6.1, model ID `gpt-6.1-sol`, with reasoning, tool use, and
code execution. The host did not expose the context-window size.

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have searched GitHub for duplicate or related PRs and linked
them above
- [x] I have either (a) linked existing issues with `Fixes: #` / `Closes
#` / `Refs #` OR (b) described the issue in-PR following the relevant
issue template
- [x] I have not referenced internal/instance-local Paperclip issues or
links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip`
URLs)
- [x] My branch name describes the change and contains no internal
Paperclip ticket id or instance-derived details
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [ ] All Paperclip CI gates are green
- [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups
- [x] I will address all Greptile and reviewer comments before
requesting merge

---------

Co-authored-by: Paperclip <noreply@paperclip.ing>
2026-11-06 17:30:28 -06:00
DottaandPaperclip 374a918d67 fix(runner): retain qualified OpenCode artifacts for cold recovery (#19622)
## Thinking Path

> - Paperclip is the open source app people use to manage AI agents for
work.
> - Native recovery must keep admitted provider state and useful
workspace files.
> - OpenCode binds its saved session to exact executable paths and
hashes.
> - A replacement image can remove those files even when session data is
saved.
> - Retaining a manifest alone cannot restore the missing launch files.
> - This pull request saves the qualified files before provider work and
restores the same owned paths.
> - The benefit is cold continuity without relaxing the Runner guard or
replaying a prior turn.

## Linked Issues or Issue Description

Refs #19558. That fix retains the selected pack for ordinary
continuation. This change adds durable file retention for a cold
allocation. Related #19487 adjusts the admission budget; it does not
retain launch files. A search of open and closed OpenCode cold/durable
artifact PRs found no duplicate.

**What happened?**

A saved OpenCode session could outlive the image that supplied its Node
executable, proxy, and native executable. A new image supplied different
bytes. The Runner then correctly refused the changed launch profile. The
saved harness did not contain the old files.

**Expected behavior**

Core must save qualified launch files before the first turn. It must
restore those exact files under the same owned account and absolute
paths. Unknown ownership, missing files, and changed hashes must still
stop recovery.

**Steps to reproduce**

Start an admitted remote OpenCode session. Save its workspace, encrypted
checkpoint, and harness data. Destroy the original allocation and
controller files. Restore into a new allocation with an image whose
qualified proxy has different bytes. Resume the same session. The new
opt-in local qualification command automates this path with actual
OpenCode and a local synthetic model.

## What Changed

- Store company-bound, encrypted launch objects and canonical run/backup
references. Generate migration 0438 through the normal database
workflow.
- Stage qualified Node, proxy, and native OpenCode files under a private
content-addressed OS-account home. Record the account UID and exact
launch paths. Preserve the Rust profile guard.
- Gate first provider work on durable capture under the current native
claim. Bound Stop/deadline waits while the actual late transfer keeps
its worker and scratch ownership until settlement. Restore cold caches
with verified staging and atomic rename. Keep live reattachment and
historical image-rooted sessions on their existing paths.
- Reuse bounded canonical expiration owners. Atomically fence old
checkpoint authority with a strict company/run-scoped retirement marker
before external deletion. Keep its indexed cleanup anchor across failed
deletes and restart. Preserve earlier resume handles and reject later
header or source-consumer writes. Add no idle scan or network call
inside a transaction.
- Add storage, race, executor, filesystem, and actual Rust resume
regressions. Add the opt-in local Linux qualification command and
operating limits in `doc/opencode-cold-recovery.md`.

## Verification

- RED before repair: real PostgreSQL/AES cold restore lacked the launch
files; normal executor preparation chose the new image pack. Separate
regressions exposed lost upload receipts, missing cache repair,
last-owner retirement, an account-UID mismatch, and a resume-handle race
during external deletion. Each expected failure was captured before its
repair.
- Local qualification before the final master integration: 1,169
executor tests, 233 storage/archive/admission/expiration tests, all
seven server typecheck layers, migration safety, and the actual Rust
cold-resume test passed.
- The maintained Linux command passed with two cached immutable
Paperclip images whose proxy hashes differ. It removed the original
account/controller trees, restored the production published cwd under a
new lease, resumed the same actual OpenCode session, kept a useful file
and prior model context, and made one new synthetic model request. No
external model call or network was available in either container.
- The object-store fixture uses real encrypted StorageService streams
with an independent owned local directory. It is not hosted S3
acceptance or a complete task HTTP/actor workflow. Historical tasks
still require normal effects reconciliation and recovery after
deployment.
- Review regressions reproduced partial-cache publication,
resume-versus-deletion, fresh-writer and source-consumer resurrection,
and unbounded Stop/deadline waits before each repair. They now pass
through real filesystem, encrypted storage, PostgreSQL, and SDK
boundaries. File validation is split from database ownership (384/831
source lines).
- Clean runtime head `aadab7acc69ff959678030db46ffe2dcfbefe28f`: the
maintained actual OpenCode cold qualification passed with `dirty:false`.
It preserved the provider session and recorded launch paths, restored
useful workspace content and prior model context, and made exactly one
resumed synthetic model request. The 314,560,000-byte launch capture
took 23.118 seconds; the later harness was 833,536 bytes. Subsequent
repairs change backup-reference retirement and governed continuity-cache
classification; capture, restore, launch, and published-workspace inputs
are unchanged, so that runtime receipt remains scoped to those paths.
The continuity-break consumer is verified separately.
- Retention repair `c14d386cecf7123257918ba6a8d47307df2da397`: 68/68
affected real PostgreSQL/AES storage tests and 15/15 focused executor
authority/admission cases pass. All seven server typecheck layers pass
(source layers and unchanged test shards, with the final 590-file test
layer repeated after fixture edits). All review threads have
evidence-backed resolutions. Its subsequent CI caught the separate
lifecycle-classification gap described below. The refreshed Paperclip
review reported paused work, not a completed new review.
- Final head `4d1cd3e3309e328b11abc85adc6d78c6d0c7f55d`: all 19 focused
root-entry/executor cases and all three source declaration layers pass.
[Greptile reviewed this exact head at
5/5](https://github.com/paperclipai/paperclip/pull/19622#issuecomment-6695984874).
Final-head [CI
verification](https://github.com/paperclipai/paperclip/actions/runs/42308908167/job/128214100339)
passes: 60 successful checks, five conditional skips, and the explicitly
neutral paused Paperclip review. No check is pending or failing.
- CI also caught the launch cache missing from the session-root
lifecycle contract. Both the writer scan and a real governed-replacement
consumer failed locally before repair: old launch bytes remained in the
active root. The cache now archives with the prior session state; the
consumer verifies exact bytes are preserved in the archive and absent
from the active root.
- The latest review found that backup retirement could delete an
independent run pin while a selected session retained the checkpoint. A
real PostgreSQL/AES regression failed before the repair. Backup-only
ownership now uses a NULL-safe exact backup predicate; the run pin
belongs to fenced checkpoint expiration. The regression verifies
checkpoint decryption and launch-file restoration after pending-backup
cleanup, followed by deletion only after removing the final resume
handle.
- An executor first-session case checks new-session durable capture
through the real capture helper and receipt propagation into the actual
harness manifest at the backup boundary. Real storage cases verify the
run-profile receipt and canonical backup/run pins.
- Sequential closure reuse and simultaneous first admission are
different scopes. A deterministic two-uploader test measures both
independent uploads, one verified ready winner, loser-only deletion, and
usable restoration for both runs. Each capture is bounded to 512 MiB and
five minutes; up to three pending receipts per run are retained. There
is no claim of global single-flight capture or a company-wide egress
bound.
- Earlier optional warm-ownership verification encountered missing local
binaries. After exact-source setup, all nine ownership assertions
passed; two other suites encountered local PostgreSQL setup/teardown
contention, so those interrupted attempts are not passes. Required
current-head CI supplies the broad final coverage. No deployment or
hosted historical recovery is claimed.

## Risks

- This adds two tables and a forward migration. The file object is
bounded to 512 MiB. Capture adds one initial transfer; later harness
archives exclude those large files. Company-scoped ready objects are
shared and retained until the last canonical owner retires. Concurrent
initial admissions can duplicate bounded transfers; each keeps
independent ownership and cancellation rather than waiting on another
controller. A continuity break retains the controller cache with its
prior state until normal session-root cleanup, adding up to one bounded
launch closure per retired state.
- Cold continuity requires the same qualified Linux platform, supported
runtime dependencies, owned account UID/home, and published absolute
cwd. A mismatch fails closed. No alias or Rust guard change is included.
- Existing image-rooted profiles have no retained file object. This
change cannot backfill missing historical binaries. A fresh governed
session must reconcile prior effects first.
- Live reattachment does not read artifact objects. Storage or
provenance failures before a new turn hold admission. They do not grant
new execution, model, tool, or replay authority.

## Model Used

OpenAI Codex, GPT-6 family, with reasoning, repository tools, code
execution, and local browser tools. The exact served model ID and
context window are not exposed in this session. No claim is made for
unavailable model metadata.

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have searched GitHub for duplicate or related PRs and linked
them above
- [x] I have either (a) linked existing issues with `Fixes: #` / `Closes
#` / `Refs #` OR (b) described the issue in-PR following the relevant
issue template
- [x] I have not referenced internal/instance-local Paperclip issues or
links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip`
URLs)
- [x] My branch name describes the change (e.g. `docs/...`, `fix/...`)
and contains no internal Paperclip ticket id or instance-derived details
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [x] All Paperclip CI gates are green
- [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups
- [x] I will address all Greptile and reviewer comments before
requesting merge

---------

Co-authored-by: Paperclip <noreply@paperclip.ing>
2026-11-06 17:30:00 -06:00
DottaandClaude Opus 5.5 a3f80ea043 fix(onboarding): close the onboarding task when its interview moves to chat (#19643)
## Thinking Path

> - Paperclip is the open source app people use to manage AI agents for
work
> - New users start in an onboarding task. The first agent can run the
onboarding interview there or in its chat.
> - #19512 moves the interview card to the chat when the agent asks it
there. The task's card expires.
> - The onboarding task then stays `in_review` with no card, run, wake
or reviewer. Review attention calls it "stalled".
> - Needs you then shows "Choose how this task continues" with Send back
to work / Request changes / Mark task done. A new user cannot know what
to pick. The card stays after the interview, plan approval and handoff
finish in chat.
> - This pull request closes the onboarding task when its interview
moves to chat, and links the chat in a system comment.
> - The benefit is that the user never decides what happens to an
internal task.

## Linked Issues or Issue Description

Refs #19512

**What happened?**
In a browser walk (Codex API path), the user chose "Interview me" in the
onboarding task. Then the user asked in Chat: "Can we do my onboarding
interview here in chat instead of in the task?". The chat card worked.
The onboarding task stayed `in_review`, and Needs you showed "Choose how
this task continues" for it until the end of onboarding.

**What did you expect?**
The onboarding task follows the conversation. It closes with a link to
the chat. No decision about an internal task goes to the user.

**Steps to reproduce**
1. Start onboarding. Choose "Interview me" on the onboarding task.
2. Open Chat with the agent. Ask to do the interview in chat.
3. Open Inbox. See "Choose how this task continues" for the onboarding
task.

## What Changed

- `server/src/services/issue-thread-interactions.ts`: after the chat
question supersedes the onboarding task's interview cards, the
onboarding task is closed (`in_review` → `done`) when no other card is
pending on it. A system comment links to the chat. The change writes an
`issue.updated` activity entry (`source: "onboarding_moved_to_chat"`).
Activity publications and issue post-commit actions run after commit.
- The task stays open if it is not `in_review` or if another card is
still pending (for example a card for a teammate).
- `first-task` skill: tells the agent that the task closes when
onboarding moves to chat. The chat then replaces the task for the rest
of the workflow (plan, proposal cards, child tasks, results). The agent
skips the steps that keep the task `in_review` or make it wait for a
child.
- `onboarding-assets/first-task/README.md`: documents the behavior.
- Tests in `server/src/__tests__/coordinator-handoff.test.ts`: the new
red/green case, plus a case that keeps the task open when another card
is pending.

## Verification

Red on master (fix reverted, same test):

```
 FAIL  src/__tests__/coordinator-handoff.test.ts > Coordinator canonical handoffs > resolves the onboarding task when its interview moves to the agent chat
AssertionError: expected [ 'stalled' ] to deeply equal []
- []
+ [
+   "stalled",
+ ]
 ❯ src/__tests__/coordinator-handoff.test.ts:257:40
    256|     // No "Choose how this task continues" stalled-review card for the…
    257|     expect(await stalledReviewCards()).toEqual([]);
      Tests  1 failed | 3 passed | 24 skipped (28)
```

The test reads the real Needs you feed (`attentionService.list`). On
master it holds a `review` item with `reviewAttentionState: "stalled"`
for the onboarding task. That is the "Choose how this task continues"
card.

Green with the fix:

```
cd server && npx vitest run src/__tests__/coordinator-handoff.test.ts
      Tests  28 passed (28)
```

Neighbour suites:

```
npx vitest run src/__tests__/onboarding-first-task-admission.test.ts src/__tests__/issue-onboarding-first-task-routes.test.ts \
  src/__tests__/issue-thread-interaction-routes.test.ts src/__tests__/issue-thread-interactions-service.test.ts \
  src/__tests__/issue-thread-interactions-telemetry.test.ts src/__tests__/coordinator-handoff.test.ts
 Test Files  6 passed (6)
      Tests  373 passed (373)
```

- `server` typecheck (`tsc --noEmit`): pass.
- `pnpm verify` exits 2 (the README is a broad input). Required CI
supplies broad coverage.
- Not run: a live browser walk. The Vitest case drives the same service
path the chat uses.

## Risks

- Low risk. The change runs only when an agent asks a question in its
own chat and that question supersedes a pending onboarding-task question
(the #19512 path).
- The onboarding task becomes `done` without a recorded first-task
decision. Later onboarding happens in chat, so nothing waits on this
task. A done onboarding parent still accepts child-completion report
wakes.
- The onboarding task rows are locked before their question rows, the
same order question creation on the task uses (Greptile review
follow-up). The chat row is locked first; no path locks an onboarding
task and then a chat row.

## Model Used

- Claude Opus 5.5 (`claude-opus-5-5`), Anthropic, via Claude Code with
tool use (shell, file edits, test runs).

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have searched GitHub for duplicate or related PRs and linked
them above
- [x] I have either (a) linked existing issues with `Fixes: #` / `Closes
#` / `Refs #` OR (b) described the issue in-PR following the relevant
issue template
- [x] I have not referenced internal/instance-local Paperclip issues or
links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip`
URLs)
- [x] My branch name describes the change (e.g. `docs/...`, `fix/...`)
and contains no internal Paperclip ticket id or instance-derived details
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [x] All Paperclip CI gates are green
- [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups
- [x] I will address all Greptile and reviewer comments before
requesting merge

🤖 Generated with [Claude Code](https://claude.com/claude-code)

---------

Co-authored-by: Claude Opus 5.5 <noreply@anthropic.com>
2026-11-06 17:27:39 -06:00
DottaandPaperclip 349b8b3f7b Migrate settled controller checkpoints while unrelated work runs (#19631)
## Thinking Path

> - Paperclip manages work performed by AI agents.
> - Server replacement must preserve retained Runner sessions.
> - Older sessions can retain controller checkpoints on the server
volume.
> - The existing importer requires all execution writers to stop,
including unrelated runs.
> - This change adds a separate online path for successful, settled
sources.
> - It locks the source task and finalizer while it reads and publishes
that source.
> - Unrelated work continues. The offline importer keeps its existing
authority.

## Linked Issues or Issue Description

**What happened?**

A retained controller checkpoint cannot be converted by the existing
maintenance importer while another task runs. Requiring a busy server to
become globally idle prevents online migration.

**Expected behavior**

An operator can convert a successful retained source after its finalizer
releases ownership, while unrelated tasks continue. An expired owner
remains an owner. Related active work and uncertain evidence remain
blocked.

**Steps to reproduce**

1. Retain a valid legacy controller for a successful run with an
accepted result and a released committed finalizer.
2. Start a different task.
3. Run controller preparation. The old importer refuses because
execution writers are active.

Related preservation contracts: #19038 and #19024. This change does not
replace workspace migration or authorize volume removal.

## What Changed

- Add `prestageNativeControllers` with task, finalizer, and source-run
row locks. Recheck related runs and exact checkpoint identity under
those locks.
- Allow legacy checkpoint material through normal settled-owner import
checks. Keep offline authority separate.
- Compare captured local controller and supervisor bytes before commit.
A changed source rolls back publication.
- Add `--controllers-only` to the existing finite native preparation
entry. This avoids re-reading provider archives during controller
conversion.
- Add PostgreSQL cases for unrelated work, expired owners, related
active work, source-lock contention, and source changes.
- Document the finite command and its limits.

## Verification

- Real PostgreSQL affected suites: 56 passed across controller migration
and recovery. A first per-server run was interrupted because it was
slow; the completed run used the repository's shared PostgreSQL test
wrapper.
- Initial online cases: 3 passed, covering unrelated work, an expired
owner, and related active work.
- Source lock and changed-file cases: 2 passed. Publication rolled back
on a source change.
- Final source-evidence regression: 2 passed. A first unproven source
deferred and a later valid source imported; changed-file rollback
remained intact.
- Server TypeScript check passed with the SDK and Runner declarations
built.
- Server package build passed, including the Runner vendor checks and
compiled command.
- Runtime bundling suite: 10 passed.
- Full repository CI and exact-head automated review remain required
before merge. This draft is not staging acceptance.


- PASS: 7 CLI cases after adding the controller-only dependency fixture
and explicit-mode coverage. The first CI run exposed missing mock/export
coverage; the fixture repair passed after rebase.
- The unrelated model-default failures were fixed on master; this branch
now includes that fix.

## Risks

- A source task can wait briefly on its own migration lock. A one-second
lock acquisition budget defers a contended source. No global admission
hold is acquired.
- Only successful sources with a released committed finalizer are
eligible. Failed or unsettled sources stay deferred and require their
preservation owners.
- The operator must run the command on the host that owns the original
files. The command does not certify enrollment readiness or detach any
volume.
- The existing offline path remains unchanged and still requires stopped
writers.

## Model Used

OpenAI Codex, GPT-6 family, with reasoning, tool use, and code
execution. The exact serving model ID and context window are not exposed
in this session.

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have searched GitHub for duplicate or related PRs and linked
them above
- [x] I have either (a) linked existing issues with `Fixes: #` / `Closes
#` / `Refs #` OR (b) described the issue in-PR following the relevant
issue template
- [x] I have not referenced internal/instance-local Paperclip issues or
links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip`
URLs)
- [x] My branch name describes the change (e.g. `docs/...`, `fix/...`)
and contains no internal Paperclip ticket id or instance-derived details
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [ ] All Paperclip CI gates are green
- [ ] Greptile is 5/5 with no open P2s, recommendations, or follow-ups
- [x] I will address all Greptile and reviewer comments before
requesting merge

---------

Co-authored-by: Paperclip <noreply@paperclip.ing>
2026-11-06 17:19:23 -06:00
DottaandClaude Opus 5.5 0c904e2fd5 fix(tasks): treat a queued-message Interrupt as a hand-off, not a failed attempt (#19633)
## Thinking Path

> - Paperclip is the open source app people use to manage AI agents for
work
> - A user can send a message while an agent works. The message waits in
a queue strip above the composer. The strip has an **Interrupt** button
that stops the current turn so the message starts now.
> - In a browser walk of onboarding, Interrupt showed a red "Couldn't
finish this attempt. Your message is saved." banner with Retry. The
thread also showed two rows for the same stopped run ("Stopped for 22s"
and "Stopped after 21s"). After about 20 s it recovered by itself.
> - A stop that the user asked for is not a failure. The red banner and
Retry make a normal action look broken.
> - #19369 stopped resource waits from showing as failed attempts. This
is the same banner, reached through the Interrupt path.
> - This pull request shows the Interrupt hand-off as working, and
renders the stopped turn once.
> - The benefit is that steering a running agent looks calm and correct:
one stopped row, no error, and the queued message starts next.

## Linked Issues or Issue Description

Refs #19369 (same banner class, resource-wait path)

**What happened?**
While an agent ran, the user queued a message and clicked Interrupt on
the queued strip. A red banner "Couldn't finish this attempt. Your
message is saved." with Retry appeared at the top of the task. Two rows
showed the same stopped run: "Stopped for 22s" and "Stopped after 21s".
About 20 s later the banner went away and the message was delivered.

**Expected behavior**
A user Interrupt is not a failure. No red banner or Retry. One "Stopped"
row, and the queued message starts next.

**Steps to reproduce**
1. Start a task with a Paperclip Runner agent.
2. While it works, send a message so it waits in the queue strip.
3. Wait more than 10 s, then click Interrupt on the queued strip.
4. See the red banner, Retry, and two "Stopped" rows.

**Paperclip version or commit**
master e482f0f632

**Agent adapter(s) involved**
Not adapter-specific (core bug); seen with Claude API through Paperclip
Runner.

## What Changed

Cause 1 — banner
(`server/src/services/task-interruption-presentation.ts`):
- The Interrupt route cancels the run with
`queuedCommentInterruptQueueId` set to the queued wake, and stamps
`queuedCommentInterrupt.requestedAt` on that wake. The projection skips
its "intentional Stop" rule whenever a pending wake exists, and treats a
pending wake as "working" only for 10 s after the message was *queued*.
A message queued earlier than 10 s before Interrupt, or a cleanup that
takes longer than 10 s, fell through to `state: "failed", canRetry:
true`.
- The projection now reads `queuedCommentInterruptQueueId` from the run
and `queuedCommentInterrupt.requestedAt` from the wake (both bounded
strings in the existing batched queries). When the cancelled run was
stopped for exactly the pending wake, it returns `working` for up to 5
min after the click. Pause, approval, reconnect and other user actions
stay first. A pending Retry preparation and exhausted system recovery
keep their own presentation. After 5 min, a hand-off that never started
shows one Retry, as before.

Cause 2 — two rows (`ui/src/components/TaskChatThread.tsx`):
- When a native runner turn ends, the live tail stays until the settled
turn *and* its reply comment render, or a 15 s backstop expires. A
stopped turn posts no reply, so the tail stayed for 15 s next to the
settled turn. That gave "Stopped after 21s" (live tail) and "Stopped for
22s" (settled turn).
- A cancelled settling run now hands off as soon as its settled turn
renders.

Tests:
- `server/src/__tests__/task-interruption-query.test.ts`: new
embedded-Postgres test drives the real batched query with the exact
`resultJson` the Interrupt route writes. It checks `working`/no Retry/no
Sentry failure capture, a run stopped for a different queue still fails,
and the 5 min bound.
- `ui/src/components/TaskChatThread.test.tsx`: new test renders a live
native runner turn, then the cancelled run with no reply. It checks
there is no live tail and exactly one "Stopped" row.

## Verification

Red on master (tests added before the fix):

```
$ npx vitest run src/__tests__/task-interruption-query.test.ts -t "queued-message Interrupt"
 FAIL  task interruption latest run query > shows a queued-message Interrupt as handing off, not as a failed attempt
AssertionError: expected { …(8) } to match object { state: 'working', …(2) }
-   "canRetry": false,
+   "canRetry": true,
-   "state": "working",
+   "state": "failed",
 Tests  1 failed | 18 skipped (19)
```

```
$ npx vitest run src/components/TaskChatThread.test.tsx -t "interrupted native turn"
 ❯ src/components/TaskChatThread.test.tsx:5528:82
    expect(container.querySelector('[data-testid="task-chat-live-transcript"]')).toBeNull();
 Tests  1 failed | 368 skipped (369)
```

Green after the fix:

```
$ npx vitest run src/__tests__/task-interruption-query.test.ts src/services/task-interruption-presentation.test.ts
 Test Files  2 passed (2)
      Tests  60 passed (60)

$ npx vitest run src/components/TaskChatThread.test.tsx -t "interrupted native turn"
 Tests  1 passed | 368 skipped (369)
```

Local `pnpm verify` (affected Vitest selection) result is added in a
follow-up comment; required CI supplies typecheck, build and the full
suite.

## Risks

- Low risk. Both changes are presentation only. Admission, cleanup and
Stop gates do not change.
- A hand-off that is blocked for a long time now shows no banner for up
to 5 min. The queued strip still shows its own wait text ("Waiting for
the previous run to finish recovery…") during that time, so the wait is
visible. After 5 min, Retry returns.
- The thread change applies only to a settling run with status
`cancelled`. Failed and succeeded runs keep the existing reply-comment
hand-off.
- Not in scope: the task status icon changed to `todo` during the
hand-off. That is the issue status, not this projection.

## Model Used

- Claude Opus 5.5 (`claude-opus-5-5`), Anthropic, via Claude Code with
tool use (shell, file edit, test execution).

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have searched GitHub for duplicate or related PRs and linked
them above
- [x] I have either (a) linked existing issues with `Fixes: #` / `Closes
#` / `Refs #` OR (b) described the issue in-PR following the relevant
issue template
- [x] I have not referenced internal/instance-local Paperclip issues or
links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip`
URLs)
- [x] My branch name describes the change (e.g. `docs/...`, `fix/...`)
and contains no internal Paperclip ticket id or instance-derived details
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [ ] All Paperclip CI gates are green
- [ ] Greptile is 5/5 with no open P2s, recommendations, or follow-ups
- [x] I will address all Greptile and reviewer comments before
requesting merge

🤖 Generated with [Claude Code](https://claude.com/claude-code)

---------

Co-authored-by: Claude Opus 5.5 <noreply@anthropic.com>
2026-11-06 17:18:04 -06:00
DottaandClaude Opus 5.5 15ee6a25a6 fix(native): re-bootstrap a claimed Daytona run killed before runner launch (#19616)
## Thinking Path

> - Paperclip is the open source app people use to manage AI agents for
work
> - Native runs on Daytona start a `paperclip-runnerd` process in a
sandbox. Restart recovery decides what to do with each live run after
the control plane restarts.
> - #19583 lets recovery start the same-run bootstrap again when the
Postgres controller checkpoint proves that the runner received only
bootstrap commands.
> - A live replay found an earlier window. The control plane died after
the executor claimed the run and staged the sandbox workspace, but
before it asked for a runner process. No runner checkpoint existed, so
#19583 did not apply.
> - Recovery classified that run as `ambiguous_remote_recovery_evidence`
and blocked the task. The task also showed "Workspace repair required",
which did not describe the real cause.
> - This pull request proves the "nothing reached a runner" case from
durable evidence and starts the bootstrap again. It also names the
restart in the settled hold note.
> - The benefit is that a restart at any point of Daytona startup before
runner launch continues automatically.

## Linked Issues or Issue Description

**What happened?**

A chaos replay killed the control plane about 2 s after a claimed ACPX
Claude run started on Daytona. The kill came after `stage.workspace` and
environment acquisition, before `native.process_start_requested`. The
restarted server took over because the previous controller process was
dead. It then returned `ambiguous_remote_recovery_evidence` with
disposition `blocked`. The task rested blocked as "Workspace repair
required".

Evidence in the saved database at that point: coordinator `attempt: 1`,
`controllerGeneration: 1`, previous controller identity recorded and
dead. Native workspace sync was `prepared`. There were no runner
checkpoint rows, no session checkpoint, no process PID or start time, no
provider session, and no execution-start or runner-sourced event. The
local session root was an empty directory.

**Expected behavior**

When durable evidence proves that no runner process was requested and no
controller checkpoint exists, recovery continues the run with a fresh
bootstrap. Any evidence that a runner may have started keeps the hold.

**Steps to reproduce**

1. Start a native run on a Daytona environment.
2. Kill the control plane after workspace staging and before the
executor requests the runner process.
3. Restart the control plane.
4. See that restart recovery blocks the task with
`ambiguous_remote_recovery_evidence`.

Root cause:
`server/src/services/native-runtime/native-restart-recovery.ts`,
function `classifyNativeRunnerRecoveryEvidence`, remote branch. The only
no-checkpoint remote rule required an unclaimed coordinator (`attempt:
0`, no controller identity). A claimed run with no launch evidence fell
through to "ambiguous".

Refs #19583, #16349

## What Changed

- `native-restart-recovery.ts`: add the `remote_runner_never_launched`
proof, which leads to `bootstrap_incomplete`. It applies only to a
classic sandbox run with a prepared workspace and the preparation
fencing version. The run must have a real executor claim (controller
identity and lease owner) whose controller is gone (takeover allowed).
It needs no durable checkpoint, no session checkpoint, no process
fields, no provider session, and no provider evidence. The run must also
have no `native.process_start_requested`, process identity,
`adapter.invoke`, `tool.execution.started`, or runner-sourced event. The
same three-attempt budget applies. The shared event query moved into
`hasNativeExecutionStartEvidence`.
- `native-session-executor.ts`:
`restoreRemoteBootstrapCheckpointForRecovery` removes an empty session
root that preparation created. Without that step, the fresh bootstrap
read it as `durable_identity_unreadable`.
- `execution-recovery-resolution.ts`: the new
`executionRecoverySettlementNote` names a settled
`native_restart_recovery_blocked` hold as a stop after a server restart.
It no longer shows "Workspace repair required" because a later workspace
export was retried. Other causes keep their notes.
- `doc/run-log-events.md`: document the new reason.

## Verification

- Red, then green: `cd server && npx vitest run
src/services/native-runtime/native-runner-restart-recovery.integration.test.ts
-t "unlaunched|never requested|Postgres checkpoint"`. Before the fix,
the proven case (lease live with a dead owner, and lease expired) and
the budget case returned `blocked` /
`ambiguous_remote_recovery_evidence`. The empty-root executor case
failed.
- Fail-closed cases: these keep the hold:
`native.process_start_requested`, a process identity event,
`adapter.invoke`, a runner-sourced event, a recorded PID, a recorded
provider session, and a spent budget. A live claiming controller returns
`awaiting_evidence` / `controller_still_alive`. The existing
"contradictory evidence" cases (`claimed` with no controller identity,
`launch`, `process`, and others) stay blocked.
- Wording: `server/src/services/execution-recovery-resolution.test.ts`.
- Regression set (10 files, including `workspace-recovery`,
`native-safe-replacement`, `heartbeat/recovery`,
`native-session-executor`, and `native-restart-recovery`): 2035 passed,
14 skipped.
- Live Daytona replay of the failing chaos task, 3 runs, sequential,
ACPX Claude, double SIGKILL, current master plus this change. Image:
content-matched `paperclip-daytona-runner@sha256:5a29a797…` built from
c6eecac1e0, with runner inputs pinned to it, because the image-only
build sat in the Actions queue. Result: **3/3 PASS** (R1 pass; R2, R4,
R5, R6 and T pass). Each run's faults landed after the runner launched.
Recovery waited on the live remote controller lease, then continued
without a Retry. Run 3 continued through `reattach_remote_runner`. The
saved logs for runs 1 and 2 do not name their claim kind. The earlier
pre-launch window (the subject of this PR) is not hit reliably by replay
timing. The integration tests cover that window with the same evidence
shape as the saved failing database.

## Risks

- The proof depends on the executor writing
`native.process_start_requested` before a backend may spawn a runner
(`onSessionAdmission` in `executeNativeSession`). A future change that
spawns a runner earlier would weaken this proof. The fail-closed tests
pin the event as the gate.
- A fresh bootstrap acquires a new sandbox. The staged sandbox from the
dead attempt keeps its lease until run settlement releases all run
leases. It never ran a runner.
- The note change affects only settled holds with the cause
`native_restart_recovery_blocked`.

## Model Used

- Claude Opus 5.5 (`claude-opus-5-5`), Anthropic, via Claude Code with
tool use (shell, file edits, GitHub CLI) and extended reasoning.

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have searched GitHub for duplicate or related PRs and linked
them above
- [x] I have either (a) linked existing issues with `Fixes: #` / `Closes
#` / `Refs #` OR (b) described the issue in-PR following the relevant
issue template
- [x] I have not referenced internal/instance-local Paperclip issues or
links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip`
URLs)
- [x] My branch name describes the change (e.g. `docs/...`, `fix/...`)
and contains no internal Paperclip ticket id or instance-derived details
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [ ] All Paperclip CI gates are green
- [ ] Greptile is 5/5 with no open P2s, recommendations, or follow-ups
- [x] I will address all Greptile and reviewer comments before
requesting merge

🤖 Generated with [Claude Code](https://claude.com/claude-code)

---------

Co-authored-by: Claude Opus 5.5 <noreply@anthropic.com>
2026-11-06 17:17:14 -06:00
DottaandPaperclip c9391720a1 fix(heartbeat): send saved follow-ups after task completion (#19600)
## Thinking Path

> - Paperclip manages agents and their work.
> - Task messages remain in a durable queue while an earlier run saves
its result.
> - That result can mark the task done before the user sends the saved
messages.
> - Send records current user intent, but its wake guard allowed only
active task states.
> - The old queue therefore remained pending with an obsolete
finalization message.
> - This change admits that exact Send receipt and reopens the task
through the issue service in the successor transaction.
> - The agent can receive the saved input once while the completed
result remains unchanged.

## Linked Issues or Issue Description

**What happened?**

Send on a saved message can leave the message queued after its native
predecessor succeeds and commits. The old wait message remains visible.
Allowing admission alone also fails: continuation construction rejects a
task that remains done.

**Expected behavior**

Explicit Send must deliver the saved input once through normal
admission. It must retain the previous run and its result.

**Steps to reproduce**

1. Save a follow-up while a native run finishes its result.
2. Let that run succeed, commit its accepted result, and mark the task
done.
3. Send the saved follow-up. Before this change, the receipt stays
deferred.

Related public work: Refs #19542. That change selects recovered
workspace files. This change handles the later saved-message admission.
Refs #19602 for the independent workflow fixture repair required by CI.

## What Changed

- Allow the exact explicit Send wake guard to accept a done task. Keep
automatic recovery and cancelled task guards unchanged.
- Reopen the task through the company-scoped issue service after
admission gates pass. Commit reopening, queue consumption and the
successor together. Publish the audit after commit.
- Add a native succeeded/committed predecessor regression with unchanged
saved work and one successor after two resume calls.
- Verify real heartbeat startup under the clicking operator. Keep
automatic input, cancelled tasks and paused agents held.
- Check workspace preflight for the prospective reopened task. Use the
normal company-scoped transition if preflight blocks a done task, so its
completion metadata is cleared.
- Check a successful native predecessor for its committed accepted
result, current ownership and pending cleanup. Keep approvals and
questions effective even without a recovery action.
- Document the saved Send contract and update the queue test dependency.

## Verification

- Final merge qualification for
`675914f0fa9b5eb1d2c9c8fcd448e0669d0c4836`: all 56 applicable status
checks pass, with no pending or failed checks. [Final
CI](https://github.com/paperclipai/paperclip/actions/runs/42307623559)
includes typecheck, build, all applicable test and E2E shards, and
aggregate verification. Current-head Greptile is 5/5; all five review
threads are resolved. Any paused or queued application review is not
claimed as a new completed review.

- Final base qualification at
`675914f0fa9b5eb1d2c9c8fcd448e0669d0c4836`: official preflight passes
(1.5s); all six integrated model-normalization cases pass (19.07s); both
affected test typecheck layers pass. The integration changes no
production server/shared/Runner/adapter inputs, so the preceding 12-case
Send proof, two ordinary status guards, and unchanged production
typecheck layers remain applicable. Fresh final-head CI supplies broad
coverage.

- New review regression: both failed and cancelled native predecessors
on a task manually marked Done fail before the repair with
`continuation_task_ownership_changed` through real
`resumeQueuedCommentInterrupt` admission. At
`bfb0eff7941090ac3ac43ce4366ba2e3d46612e9`, all 12 affected
Send/source/cleanup/workspace/decision cases pass (246.80s), ordinary
Done/cancelled rejection cases pass (2; 100.31s), and all seven server
typecheck layers pass. History validation uses the prospective reopened
status only for an already-verified explicit native Send. No status is
changed during a dry run.
- Prior `e64e4bb1` CI passed the affected serialized server suites,
including the complete saved-message route suite, typecheck and build.
General server shard 4 still failed two unrelated stale default-model
expectations (`gpt-5.6-sol` versus the new `gpt-6.1-sol` default). The
equivalent repair has already merged in #19610 as
`8621bcf53ee2e4bbefb7d193add42dd544ca06e8`; the separately prepared
#19645 is closed as superseded. This source fix does not weaken or edit
those assertions.

- Original RED: the committed-source and completed-task startup cases
left the saved receipt deferred.
- Review RED: Done plus an unrunnable isolated worktree created one
successor instead of zero. A successful committed predecessor with
pending lease cleanup also created one instead of zero. The new
Done-to-blocked path retained stale completion time. Pending approvals
and questions each allowed a successor. All failures were captured
before their respective repairs.
- Integrated production revision
`99018264dd1ef002ff3500378184bcd167d9206b`: 417 affected cases pass
across the complete native continuation, responsible-user startup, and
workspace preflight suites (386 + 18 + 13). These include the original
successful startup case and six cleanup/finalization faults that hold
the exact saved receipt until settlement, then deliver it once.
- `pnpm --filter @paperclipai/server typecheck` passes all seven layers
on that integrated head, including the local Runner/SDK dependency
build. Module-boundary, whitespace, and added-code-comment checks pass.
- Normal master integrations preserve branch history. No force push or
assertion weakening was used. Fresh CI and automated review are running
on `675914f0fa9b5eb1d2c9c8fcd448e0669d0c4836`, which normally integrates
the already-merged #19610 fixture repair after the reproduced inherited
CI failure.
- The earlier CI attempt failed in five unchanged workflow fixture cases
because IMAGE_ONLY was unset. The merged #19602 repairs that fixture. A
later inherited duplicate default in that independent fixture has a
separate repair; this PR does not edit it.
- Follow-up route-fixture RED: three existing native queue delivery
cases failed because their fixture marked a run successful without an
accepted result or committed finalization. The same three cases pass
after the fixture records the complete native success contract (42.08s);
delivery assertions and production gates are unchanged. The affected
test-tree TypeScript layer also passes. The full route run passed all
119 assertions but failed its 30-second database teardown hook, so it is
not recorded as a suite pass. That result is retained. One unchanged
bounded rerun was stopped after more than 15 minutes without a final
verdict; it is inconclusive, not a pass.
- Final integrated head `e64e4bb1`: all 13 focused route and
completed-task admission cases pass across two real-PostgreSQL suites
(188.95s), including the three repaired route fixtures and every new
cleanup/finalization/decision hold. Fresh preflight passes; all seven
server typecheck layers pass. Required final CI supplies the broader
route and server coverage.
- These tests use real PostgreSQL and normal admission, cleanup, queue
consumption, and startup services. The startup suite controls the
provider boundary. Hosted provider acceptance remains pending normal
deployment.

## Risks

- Explicit Send can reopen a done task. This is limited to its validated
saved receipt and current assignee. A cancelled task remains held.
- Reopening uses the existing company-scoped issue transition and shares
the successor transaction. A failed admission does not reopen the task.
Provider Stop, workspace, approval, pause and budget checks retain their
existing owners.
- Cleanup and pending decisions retain the done task and saved receipt.
An unrunnable workspace uses the existing blocked-task diagnostic. No
schema or runtime package changes.

## Model Used

- OpenAI Codex, GPT-6 family; exact serving snapshot/context window not
exposed; repository analysis, code editing, tool execution.

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have searched GitHub for duplicate or related PRs and linked
them above
- [x] I have either (a) linked existing issues with `Fixes: #` / `Closes
#` / `Refs #` OR (b) described the issue in-PR following the relevant
issue template
- [x] I have not referenced internal/instance-local Paperclip issues or
links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip`
URLs)
- [x] My branch name describes the change (e.g. `docs/...`, `fix/...`)
and contains no internal Paperclip ticket id or instance-derived details
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [x] All Paperclip CI gates are green
- [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups
- [x] I will address all Greptile and reviewer comments before
requesting merge

---------

Co-authored-by: Paperclip <noreply@paperclip.ing>
2026-11-06 17:15:07 -06:00
DottaandPaperclip 795c3c4c1d fix(recovery): continue saved input after historical retry pause (#19576)
## Thinking Path

> - Paperclip manages work performed by AI agents.
> - Its scheduler parks work when another run holds a shared workspace.
> - A pause can refuse the scheduled retry before provider dispatch.
> - Older schedulers recorded that refusal in the run log without a JSON
marker.
> - After the pause was released, a saved user message could remain held
for execution recovery.
> - This change verifies the original refusal and parent workspace-wait
proof before admitting one continuation.
> - Existing execution, Stop, budget, approval, and workspace guards
remain in force.

## Linked Issues or Issue Description

Refs #19466, #19552, #19580, #19602.

**What happened?**

A saved user message remained deferred after a pause was released. Its
source was a never-claimed workspace retry. The historical source had an
`issue_paused` error and no JSON cancellation marker. The continuation
proof accepted only a different system-cancellation shape.

**Expected behavior**

The normal saved-message worker admits the existing input once when
trusted scheduler evidence proves no provider dispatch occurred and
current admission gates permit work.

**Steps to reproduce**

1. Record a host-certified pre-provider workspace wait and its scheduled
retry.
2. Let the real scheduler refuse promotion under an active task pause,
including after the user presses Retry Now.
3. Keep the historical run-log-only cancellation shape, then release the
pause.
4. Run concurrent normal saved-message recovery scans.

**Paperclip version or commit**

The regression fails on master `f0006c7783`. It leaves zero queued
successors. The branch now normally integrates the fixture repairs in
#19602 and #19628.

## What Changed

- Accept the historical cancellation shape only when a trusted system
lifecycle warning records the exact scheduler pause refusal. A prior
Retry Now event does not invalidate that proof.
- Bind the event to a released same-company pause and its task
membership.
- Reuse the existing parent workspace-wait certificate,
no-provider-output checks, and retained-execution rejection.
- Preserve historical cancellation records and consume the existing
saved input through normal admission.
- Document the contract and add real PostgreSQL coverage using actual
scheduler suppression and pause release.

## Verification

- RED: the real scheduler suppressed the retry under a pause. After
release, two normal recovery scans left zero successors.
- GREEN: the same path creates one successor and coalesces the original
saved request.
- All 389 tests in the complete native continuation suite pass before
the final base update. The only changed continuation source from master
is the separately merged one-line repair in #19552.
- Fourteen focused cases passed at
`2aaeb50f78ba0a22809ab96a00076ce50fcea559`, including a parent pause
covering a child task. Thirteen cases also passed before the base
update. They cover the normal path and missing event, wrong task,
missing membership, active or mistimed pause, provider activity,
retained lease, operator Stop, and invalid ancestry.
- The earlier seven-layer server typecheck passed after building this
worktree's Runner and SDK dependencies. The current review fix passes
the exact CI test-layer typecheck. Fresh required CI will supply
current-head source coverage.
- The first sandboxed database run could not bind loopback. A later
fresh dependency install omitted native PostgreSQL library symlinks and
failed before executing tests. The package's own postinstall hydration
repaired that setup. Previous-head verification passed all 14 focused
cases at `2aaeb50f78ba0a22809ab96a00076ce50fcea559`.
- Module-boundary and whitespace checks pass.
- Commands: `cd server && pnpm exec vitest run
src/services/explicit-native-continuation.test.ts`; `pnpm --filter
@paperclipai/server typecheck`.
- Environment: macOS arm64, Node 26.4.0, pnpm 9.15.4, real local
PostgreSQL.
- Previous head `2aaeb50f78ba0a22809ab96a00076ce50fcea559` had Greptile
5/5 and 56 passing checks, with three skipped. A later advisory review
found the Retry Now event-order case. Those checks do not qualify the
new head. Hosted recovery remains unverified.
- Review RED: the real `retryScheduledRetryNow` producer wrote
lifecycle/info at sequence 1 and the exact pause warning at sequence 2.
After real hold release and two concurrent normal queued-message scans,
both task-rooted and parent-rooted cases produced zero successors
instead of one. Both failed before the production change (17.24s).
- Review GREEN: all 17 focused cases pass at
`f38e9934b8ce3f7ddfb23eaa0f979c3f44e7a990` (4.74s). The previous 14
cases remain covered. Two new cases use the real Retry Now producer, and
one new case rejects contradictory provider execution evidence. No
pause, membership, timing, ancestry, output, retained-execution, or Stop
check was removed.
- Current focused command: `pnpm exec vitest run
server/src/services/explicit-native-continuation.test.ts -t 'historical
pause|Retry Now pause history' --fsModuleCache`. Current test-layer
typecheck: `cd server && node ../node_modules/typescript/bin/tsc
--noEmit --project
node_modules/.cache/paperclip-typecheck/tsconfig.tests.json --pretty
false`. Both pass.
- Final-head verification: all 17 focused cases passed again at
`c88687d69f2c87fe1b81b5fffd670e3cf26a884d` (8.00s). The prior exact CI
test-layer typecheck qualifies the unchanged typed logic; fresh CI
supplies broader final-head coverage.
- The follow-up commit removes only the new code comments to follow
CONTRIBUTING.md. Recovery and test behavior are unchanged. That revision
had Greptile 5/5 with its actionable review thread resolved. It is
retained as historical verification; current-head qualification is
below.

- The first final-head CI attempt failed in the unchanged CLI company
import/export fixture before assertions: its child server did not reach
the runtime-info health check within 30 seconds. Other suites passed.
The exact fixture passes locally with its original timeout. The single
failed-shard retry passed at the unchanged head, together with its
dependent CI checks. [Original failed
job](https://github.com/paperclipai/paperclip/actions/runs/42279773036/job/128106195975).
No assertion or timeout was changed.

- The independent required Runner support failure reproduced five
`IMAGE_ONLY: unbound variable` errors. #19602 repaired its fixture
inputs and merged as `4d554f08218b04df49ec0f2a0d5c5dfdfaf65660`. This
branch normally merges that master with no conflicts or force push. The
current host-preparation log verifier from #19580 remains intact.
- Final integrated head `ffc9e8d9516343a9823b4b80b5fcfccc548844ba`:
17/17 focused recovery cases pass (12.71s), all nine workflow-target
cases pass through the official Runner Vitest config (1.10s), and all
seven current server typecheck layers pass. Worktree preflight rebuilt
current Runner dependencies and reused the Cargo seed; it completed in
61.3s with Rust debug binaries skipped.
- Prior integrated head `ffc9e8d9516343a9823b4b80b5fcfccc548844ba`
finished with 54 successful checks. Its only code-check failure was a
global unhandled readiness rejection after 2,285 assertions passed in
the server8 shard, plus dependent verify. The real-child race is fixed
separately in #19624; it was not hidden by a rerun here.
- Final normal integration head
`550d1732b6960d6b349d03903f448fa1d71c17f6`: exact 17 paused-retry
lifecycle regressions pass (71.06s), all nine official workflow target
cases pass (2.43s), all seven server typecheck layers pass, and
module/whitespace checks pass. Required preflight completed in 45.641s.
Current preparation-log guards from #19580 remain intact. The diff
against master contains only the original three owner/test/doc files.
- Prior head 550d had two inherited model-default assertion failures
plus a retained-cleanup backlog 15s timeout. The exact unchanged cleanup
case passes locally (41.91s total including DB/hooks); no timer or
assertion was weakened and no old CI job was rerun. The model fixture
repair was independently merged in #19610 at
8621bcf53e.
- Current normal integration head
`14103750d5f26d7f476f937e981e3e45c94054ab`: 17/17 exact lifecycle cases
pass (75.33s), all 6 model normalization cases pass (6.58s), all seven
server typecheck layers and source checks pass. Required preflight
completed in 13.89s. No source guards or timeouts changed during this
integration.
- Current-head CI and Greptile are green. Earlier checks do not qualify
this final integration head.

- Current-head Greptile: 5/5 at
`14103750d5f26d7f476f937e981e3e45c94054ab`, with all review threads
resolved. Required CI passed: 56 successful checks, three intentional
skips, one neutral review status. The separate optional Paperclip review
job remains queued; no open findings.

## Risks

This adds a bounded indexed evidence query for a narrow historical
cancellation shape. Missing or contradictory evidence keeps work held.
It does not replay a provider turn or change current pause, budget,
approval, Stop, or workspace authority.

## Model Used

OpenAI Codex, GPT-6 family, with repository analysis, code editing, and
tool execution. The exact serving snapshot and context-window size are
not exposed in this session.

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have searched GitHub for duplicate or related PRs and linked
them above
- [x] I have either (a) linked existing issues with `Fixes: #` /
`Closes: #` / `Refs: #` OR (b) described the issue in-PR following the
relevant issue template
- [x] I have not referenced internal/instance-local Paperclip issues or
links (only public GitHub references)
- [x] My branch name describes the change and contains no internal
Paperclip ticket id
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [x] All Paperclip CI gates are green
- [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups
- [x] I will address all Greptile and reviewer comments before
requesting merge

---------

Co-authored-by: Paperclip <noreply@paperclip.ing>
2026-11-06 17:13:52 -06:00
DottaandPaperclip 2e340d6235 fix(ui): show unread message counts in agent chat pickers (#19627)
## Thinking Path

> - Paperclip helps people manage AI agents and their work.
> - People switch between agent chats to read replies.
> - The agent picker does not show how many messages are unread.
> - People need that count before they select a chat.
> - The chat list already has the viewer's read state.
> - This pull request adds numeric badges from that shared list.
> - People can find unread replies without extra requests for each
agent.

## Linked Issues or Issue Description

**What existing behavior does this improve?**

The chat header agent picker and the secondary sidebar's Add chat
picker.

**Subsystem affected**

Agent Chat UI, shared task types, and the chat read-state service.

**Current behavior**

The pickers do not show the unread message count for each agent.

**Proposed behavior**

Show the unread count beside each agent. For example, show 3 for three
unread agent messages. Hide the badge when the count is zero. Keep
switching available while chat data loads.

**Reason and benefit**

People can see which chats need attention before they switch. The count
uses the existing shared request and cache.

**Breaking changes**

The chat response gains an optional `unreadMessageCount` field. Existing
fields and read receipts keep their behavior. There is no database
migration.

**Additional context**

Related: #19425 changes chat structure. This change adds counts to the
current agent pickers. The duplicate search found no PR for these count
badges.

## What Changed

- Count unread agent comments in the existing grouped read-state query.
Keep company and viewer scope.
- Exclude human messages, deleted comments, system notices, and
fast-response receipts.
- Pass memoized count maps to both agent pickers. Use a direct lookup
for each row.
- Show numeric badges and accessible singular or plural labels.
- Test count changes, account isolation, cached opens, search, and large
agent lists.
- Update the chat stories, fixture data, and development guide.
- Make the Slack owner retry-deadline test deterministic after
reproducing its CI failure.

## Verification

- On current head `05f5fa6201`, the [main CI
workflow](https://github.com/paperclipai/paperclip/actions/runs/42305845930)
passed, including build, typecheck, all applicable test shards, browser
shards, and final verification. The prior server shard 2, 6, and 7
failures do not recur.
- [Greptile's current-head
review](https://github.com/paperclipai/paperclip/pull/19627#issuecomment-6696161631)
is 5/5, its check succeeded, and both previous review threads are
resolved. Current head check inventory is complete: 55 successful
checks, three intentional skips, and no pending or failed checks. The
Paperclip application review summary reports paused; no new completed
Paperclip review is claimed. Its existing findings are resolved, and the
independent current-head Greptile review is 5/5.

- Current head `05f5fa6201` merges master `8621bcf53e` to resolve an
import conflict. Master now includes the same model-default test repair.
This branch keeps its upstream import, so that file no longer differs
from master.
- After this merge: all 21 server tests in the Slack owner and
model-default suites pass, all 22 tests in the three picker/sidebar
suites pass, and token gates pass. The standard preflight still cannot
build Rust because `cargo` is absent. Fresh CI must supply the broad
checks.

- Head `7d125fb8c7` replaces the Slack owner test's real timer wait with
the worker's existing clock input. It checks that the intent stays
pending one millisecond before the retry deadline and clears at the
deadline. All 15 Slack owner integration tests pass locally. Runtime
retry behavior is unchanged.
- On `4cfb1e9d55`, both review checks gave 5/5. CI [server shard
2](https://github.com/paperclipai/paperclip/actions/runs/42302458830/job/128183671349)
failed the Slack credential-lease retry test. The same assertion failed
in an unchanged local run. A diagnostic run with added logging passed;
the exact timer deviation was not captured. The new test removes the
real-time wait assumption and checks the clock boundary directly. The
earlier model-default and cleanup failures did not recur in that CI run.

- On `a3378dfc40`, both Greptile and Paperclip Review gave 5/5 with no
open findings. Typecheck, build, all eight browser shards, and most test
shards passed.
- That CI attempt failed two server shards. The model-default test still
expected `gpt-5.6-sol`, while the current default is `gpt-6.1-sol`. I
reproduced both failures locally. Commit `4cfb1e9d55` uses the exported
default-model constant; all six tests in that suite now pass. Production
model selection does not change.
- The retained-cleanup backlog test exceeded its 15-second limit in
[server shard
6](https://github.com/paperclipai/paperclip/actions/runs/42299858777/job/128175193320).
The unchanged test passes locally with the same limit. Its CI timeout
cause is not established. No assertion or timeout was changed. The fresh
CI run must recheck it.

- Review repair: commit `0db631b215` keeps the existing-chat and
unread-agent arrays stable when chat data and the active agent do not
change. A new 500-agent test fails before the repair and passes after
it. The test also checks count refreshes.
- The first CI typecheck failed on duplicate `IMAGE_ONLY` and
`TESTOPS_REQUESTED` keys in `tests/runner-e2e/workflow-target.test.ts`.
This was present in upstream code. Master commit `e482f0f632` removes
the duplicate keys. This branch now includes that commit. All nine
workflow-target tests pass locally.
- After the latest master merge: all 22 tests in the three affected
picker/sidebar suites pass. Before that merge, all 38 focused UI tests
passed.
- The current head is `05f5fa620134ad199a3d85b66fb2eb93d3bb6077`. All
current status checks are complete, the aggregate verify gate succeeds,
mergeability is CLEAN, and no unresolved review threads remain. The
maintainer has instructed normal merge after checks pass.

- After merging current master: 37 focused UI tests pass across
AgentChatPicker, CoordinatorAgentSwitcher, AgentConversationsSidebar,
useAgentChatRead, and SidebarAgentChats.
- After merging current master: all 38 proactive-chat integration tests
pass with a real disposable PostgreSQL database. They check counts of 2,
1, and 0 at exact read cutoffs.
- The prior revision passed UI typecheck and build, shared build,
isolated low-memory server typecheck, token gates, and 30 map/catalog
tests.
- The 500-agent test bounds index work and count lookups. Search does
not rebuild the existing-chat index.
- Browser checks used production components with simulated API data.
Dark, light, mobile, and Add chat cases passed. Counts of 3 and 12
stayed visible through search. Read agents had no badge. Cached opens
made no chat API requests.
- Twenty local cached opens took 34.5–57.6 ms, with a 38.4 ms median.
This is an unthrottled fixture measurement.
- Earlier full local checks could not complete because Rust cargo is
absent and the workspace has limited memory. The standard worktree
preflight also stops at missing cargo. Required CI must supply broad
checks for this PR head.
- The first server typecheck ran out of memory while Storybook was
active. Its isolated low-memory retry passed. No visual baseline
comparison or live provider delivery is claimed.

## Risks

- Low risk. The count replaces a boolean aggregate in the same grouped
query. Very long chat histories still need that existing scan.
- A count can be stale until the existing chat-list cache refreshes.
Read receipts still control the unread cutoff.
- The change adds no polling, per-agent history request, database
migration, or permission change.

## Model Used

OpenAI GPT-6 through Codex, with code editing, terminal tools, and
browser verification. The runtime did not expose a more specific served
model ID or context-window size.

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have searched GitHub for duplicate or related PRs and linked
them above
- [x] I have either (a) linked existing issues with `Fixes: #` / `Closes
#` / `Refs #` OR (b) described the issue in-PR following the relevant
issue template
- [x] I have not referenced internal/instance-local Paperclip issues or
links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip`
URLs)
- [x] My branch name describes the change (e.g. `docs/...`, `fix/...`)
and contains no internal Paperclip ticket id or instance-derived details
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [x] All Paperclip CI gates are green
- [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups
- [x] I will address all Greptile and reviewer comments before
requesting merge

---------

Co-authored-by: Paperclip <noreply@paperclip.ing>
2026-11-06 17:10:56 -06:00
DottaandClaude Opus 5.5 7941f6b051 fix(runner): show OpenRouter's invalid model ID as a model rejection (#19548)
## Thinking Path

> - Paperclip is the open source app people use to manage AI agents for
work
> - Native runs use the Paperclip runner with drivers such as OpenCode
> - When a provider rejects the selected model, the product shows "Model
unavailable" and offers a model choice
> - OpenCode reports provider HTTP errors as `APIError` with the message
under `data`, not at the top level
> - The runner then reported "Provider turn failed", so an invalid model
ended as a generic adapter failure
> - This pull request classifies OpenRouter's invalid model ID with a
closed provider-failure category, and makes the server keep that
classification
> - The benefit is that a person sees "Model unavailable" and the real
provider message, and can choose another model

## Linked Issues or Issue Description

**What happened?**
A chat evaluation selected a model ID that OpenRouter does not know.
OpenCode reported `turn.failed` with `error: { name: "APIError", data: {
message: "<model> is not a valid model ID", statusCode: 400,
isRetryable: false } }`. The run was saved with `errorCode:
adapter_failed`. The task chat showed "The OpenCode run failed before it
completed." and no "Model unavailable" marker. The provider notice said
only "OpenCode session failed.".

**Expected behavior**
A non-retryable rejection of the selected model is saved as
`native_provider_model_rejected`, so the product shows "Model
unavailable" and the model choice. The notice shows the provider's
message.

**Steps to reproduce**
1. Configure an OpenCode agent with an OpenRouter model ID that does not
exist.
2. Send the agent a message.
3. Before this change, the run fails as `adapter_failed` and the notice
says "OpenCode session failed.".

## What Changed

- `drivers/opencode/provider-failure.ts`: a non-retryable OpenCode
provider error whose message says the model is not valid (`not a valid
model`, `model_not_found`, model not found or not supported) gets the
closed category `model_unavailable`. A provider that allows a retry
keeps the existing category.
- `native-session-runtime.ts`: a non-recoverable failure with
`model_unavailable` is a model rejection. The runtime reads the closed
category, not provider text.
- `native-session-executor.ts`: a non-recoverable
`NativeProviderTerminalFailure` that the runner marked as a model
rejection is saved as `native_provider_model_rejected`. Before, every
such terminal was saved as `native_provider_terminal_failed` before the
marker was read.
- `drivers/opencode/opencode-server-driver.ts`: the provider notice
summary shows the provider message from `data` when there is no
top-level message. Provider text is not used as the turn failure
message, so it does not reach `run.error` or Sentry.
- Tests: provider-failure mapping (retryable and non-retryable), runtime
classification by category, driver notice summary with no failure
message, and an executor test for the saved code and terminal
disposition.

## Verification

- `npx vitest run src/native-session-runtime.test.ts
src/drivers/provider-failure.test.ts src/drivers/opencode` in
`packages/paperclip-runner`: 16 files, 412 tests passed.
- `npx vitest run
src/services/native-runtime/native-session-executor.test.ts` in
`server`: 1,152 tests passed.
- Negative controls: reverting the provider-failure mapping, the runtime
check, or the executor branch each makes its new test fail.

## Risks

- Low risk. Classification uses a closed category and a runner-set
marker, not provider text.
- The model check on the provider message is text-based inside the
OpenCode mapper. A provider that uses "not a valid model" for another
reason with a non-retryable error will show "Model unavailable".
- Provider text appears in the notice summary, as provider notices
already did for top-level messages.

> For core feature work, check [`ROADMAP.md`](ROADMAP.md) first and
discuss it in `#dev` before opening the PR. Feature PRs that overlap
with planned core work may need to be redirected — check the roadmap
first. See `CONTRIBUTING.md`.

## Model Used

- Claude Opus 5.5 (`claude-opus-5-5`), Anthropic, with tool use and code
execution in Claude Code.

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have searched GitHub for duplicate or related PRs and linked
them above
- [x] I have either (a) linked existing issues with `Fixes: #` / `Closes
#` / `Refs #` OR (b) described the issue in-PR following the relevant
issue template
- [x] I have not referenced internal/instance-local Paperclip issues or
links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip`
URLs)
- [x] My branch name describes the change (e.g. `docs/...`, `fix/...`)
and contains no internal Paperclip ticket id or instance-derived details
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [ ] All Paperclip CI gates are green
- [ ] Greptile is 5/5 with no open P2s, recommendations, or follow-ups
- [x] I will address all Greptile and reviewer comments before
requesting merge

🤖 Generated with [Claude Code](https://claude.com/claude-code)

---------

Co-authored-by: Claude Opus 5.5 <noreply@anthropic.com>
2026-11-06 17:08:04 -06:00
Nicky LeachandClaude Opus 5.5 913102870d fix(environments): fill the managed instance default once, under a lock (#19632)
## Thinking Path

> - Paperclip is the open source app people use to manage AI agents for
work
> - On a managed instance under `enableManagedSandboxOnly`, boot points
the instance default at the managed sandbox when nothing deliberate is
set
> - That write read the default and wrote it later without a lock. Two
overlapping boots, or a boot and an admin write, could overwrite a value
the other had just committed
> - A revert path also reset that stamped default whenever the mode was
turned off, so a platform-filled default could change again later
> - A planned plugin-environment default should fill only an unset
default and never change a set one, which needs every instance's default
to stay set
> - This pull request makes the fill one locked transaction and removes
the revert, so a filled default is an ordinary set value
> - The benefit is a single, race-free rule: boot fills an unset default
once, and nothing changes a set default afterwards

## Linked Issues or Issue Description

Refs #19551 (the plugin-environment default that builds on this rule)

**Subsystem affected**
Server environments: the managed environment bootstrap and the instance
settings route.

**Problem or motivation**
`applyManagedEnvironments` read the instance default, decided, and wrote
it in separate steps with no lock, so a concurrent boot or admin write
could be overwritten. When `enableManagedSandboxOnly` was not declared,
a revert reset a default the platform had filled. That needed a
`managedDefaultStamped` marker, plus a marker clear on every admin
default write. A later boot could therefore change a default that had
already been set.

**Proposed solution**
Fill the default in one transaction that locks the instance default row
and rechecks it. Fill only an unset, local or deleted default. Remove
the revert and its marker, so a filled default behaves like any other
set value.

**Alternatives considered**
Keeping the revert and adding locks to it. A revert on a mode change
would still move an existing instance's default later, which a fill-only
plugin default cannot tolerate.

**Roadmap alignment**
This narrows existing managed-environment behaviour. It adds no product
surface.

## What Changed

- New `server/src/services/managed-instance-default.ts`:
`fillUnsetInstanceDefault(db, environmentId)`. In one transaction it
creates the settings row if needed, locks the instance default row (`FOR
UPDATE`), and rechecks the current value. It writes only when the
default is unset, names the local environment, or names a deleted
environment. Any other set default is kept.
- `server/src/services/managed-environments.ts`:
- Under `enableManagedSandboxOnly`, the managed sandbox fill now uses
that helper, through a new `fillInstanceDefault` test seam.
- The mode-off revert and the `managedDefaultStamped` marker are
removed.
- The unused `instanceSettings` seam option is removed, along with the
`getById`, `update` and `findManagedSandboxEnvironment` methods of the
environments seam.
- `server/src/routes/instance-settings.ts`: an explicit default write is
a plain `update` again. The marker clear and its transaction are gone.
- `doc/DEVELOPING.md`: the "Managed environments" section states the
fill rule.

Existing rows may still carry `managedDefaultStamped` in their metadata.
Nothing reads it any more, and it is not part of the managed stock hash.

## Verification

- `cd server && npx vitest run
src/__tests__/managed-instance-default.test.ts` (embedded Postgres):
- The fill writes an unset default, including on a fresh instance with
no settings row. It also writes a default that names the local
environment, or one whose environment was deleted.
- It never changes a default set to an ssh, plugin or other sandbox
environment, and leaves a default that already names the target alone.
- Controlled overlap: an uncommitted admin default write makes the fill
wait, and the fill then keeps the admin's value. This test fails without
the row lock.
  - Two overlapping fills: exactly one writes.
- Real boot pass: the default is filled under managed-sandbox-only and
stays the same after a boot with the mode off. A set default stays on
every boot.
- `npx vitest run src/services/managed-environments.test.ts
src/services/managed-environments-plugin-entries.test.ts`: the fill runs
only under managed-sandbox-only, with the managed sandbox row. It never
runs for a plugin environment. Nothing is written when the mode is off.
A failed fill does not fail the ensure.
- `npx vitest run src/__tests__/instance-settings-routes.test.ts`: an
explicit default write is a plain update that touches no environment
row.
- `npx vitest run src/__tests__/managed-plugin-environments.test.ts
src/__tests__/environment-routes.test.ts
src/__tests__/server-startup-feedback-export.test.ts
src/__tests__/instance-settings-service.test.ts`: pass.
- `pnpm --filter @paperclipai/server typecheck` passes.
- I did not run the full `pnpm test:run`, `pnpm -r typecheck` or `pnpm
build`. CI covers them.

## Risks

- Behaviour change: when `enableManagedSandboxOnly` is turned off for an
instance, a default the platform filled with the managed sandbox now
stays. Local execution is still allowed then, but it is no longer the
default unless an admin picks it.
- No schema change. Stale `managedDefaultStamped` keys stay in some row
metadata and are ignored.
- The fill holds the instance default row lock for one short transaction
at boot.

> For core feature work, check [`ROADMAP.md`](ROADMAP.md) first and
discuss it in `#dev` before opening the PR. Feature PRs that overlap
with planned core work may need to be redirected — check the roadmap
first. See `CONTRIBUTING.md`.

## Model Used

- Claude Opus 5.5 (`claude-opus-5-5`), Anthropic, through Claude Code
with tool use (file edits, shell, test runs).

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have searched GitHub for duplicate or related PRs and linked
them above
- [x] I have either (a) linked existing issues with `Fixes: #` / `Closes
#` / `Refs #` OR (b) described the issue in-PR following the relevant
issue template
- [x] I have not referenced internal/instance-local Paperclip issues or
links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip`
URLs)
- [x] My branch name describes the change (e.g. `docs/...`, `fix/...`)
and contains no internal Paperclip ticket id or instance-derived details
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [x] All Paperclip CI gates are green
- [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups
- [x] I will address all Greptile and reviewer comments before
requesting merge

🤖 Generated with [Claude Code](https://claude.com/claude-code)

Co-authored-by: Claude Opus 5.5 <noreply@anthropic.com>
2026-11-06 15:01:58 -08:00
Devin FoleyandPaperclip 8621bcf53e Cancel subscription sign-in requests when leaving agent setup (#19610)
Back during pending subscription sign-in could accept a late response and
reopen agent setup. Abort pending reads, release abandoned sessions, and
ignore stale responses. Wait for cleanup before starting a replacement,
and preserve sessions belonging to another account or environment.

Cover deferred resume/start/prompt responses for both providers, local
login cancellation, quick reselection, and browser request abort. Stabilize
Runner fixtures and normalization assertions exposed by integration CI.

Verified: 483 focused UI tests, six onboarding browser cases, UI typecheck
and token gates, Runner fixture checks, and the complete CI run on
221f2e3eb7. Greptile scored 5/5;
all review threads are resolved. Earlier failures and recovery evidence
remain in the PR description.

Co-Authored-By: Paperclip <noreply@paperclip.ing>
2026-11-06 14:31:11 -08:00
DottaandPaperclip c66b4a55ef fix(ui): explain monitor waits during active runs (#19519)
## Thinking Path

> - Paperclip manages work performed by AI agents.
> - Task monitors schedule later checks through execution admission.
> - A native run must save its work before a monitor starts another run.
> - The monitor banner can show an overdue warning during this valid
wait.
> - It also promises the next tick and offers a check that cannot start.
> - This change explains the active run hold on both monitor surfaces.
> - Users can see why the check waits without changing execution guards.

## Linked Issues or Issue Description

Refs #16975 and #17863. The branch also preserves the quiet
workspace-wait behavior from #19507. These changes added the native
settlement guard and monitor deadline worker. A search found no open PR
for this display case.

**What happened?**

A monitor became due while its native run was still saving work. The
banner showed an overdue warning and “Fires on next tick.” The check
later ran. The warning did not explain the execution hold.

**Expected behavior**

Show the active run wait. Keep the saved check time. Restore the normal
display when the run clears.

**Steps to reproduce**

1. Keep a task run active and set a monitor on that task.
2. Let the saved check time pass.
3. Inspect the monitor banner and composer strip.

**Paperclip version or commit**

Reproduced in mounted production components at a434edf991. The branch
also includes current master.

**Deployment mode**

Source checkout on Linux. PostgreSQL tests use an isolated embedded
database. No staging deployment is part of this PR.

## What Changed

- Pass the existing task live-run state to both monitor surfaces.
- Explain the current run wait. Keep its tone neutral and its saved
check time visible.
- Hide Check now during the hold. Restore it when the run clears.
- Keep pending GitHub PR links visible during the hold. Restore Check
status after the run clears.
- Preserve blocked-task, retry, and idle-overdue display behavior.
- Add rendered regressions and PostgreSQL finalization-release tests.
- Document the distinction between a deadline and admission.

The monitor display owns this change. The page already reads task run
state, so this adds no API request. The scheduler and its guards are
unchanged. The PostgreSQL tests confirm existing behavior. They are not
evidence of a repaired scheduler fault.

## Verification

- Before the repair, all three new rendered cases failed: future,
due-now, and two-minute-overdue monitors during an active run.
- After the repair, 50 UI tests pass across IssueMonitorBanner and
issue-monitor. The same tests check return to normal display when the
run clears.
- Deadline, scheduled-work, and delivery-coordinator tests pass: 50
tests. The combined five-file run before the final safety assertion
passed 99 tests.
- PostgreSQL regressions cover release of committed and terminal_failure
holds, rollback, one admitted wake, and quiet workers after settlement.
- UI typecheck, token gates, and git diff --check pass.
- A frozen install and plugin SDK dependency build were required for
server test collection. The first collection attempt could not resolve
the unbuilt SDK. That attempt had no test verdict.
- At initial head ee030bdf22, the focused
three-file run passes 52 tests: 50 UI tests plus both PostgreSQL
finalization-release cases. UI typecheck and token gates pass again
after the master merge.
- The complete PostgreSQL scheduling suite passes all 56 tests before
the master merge. The earlier 54-test baseline also passes.
- A real local task page passes in Chromium with fresh embedded
PostgreSQL and a process run. Both monitor surfaces explain the hold.
Check now stays hidden. Advancing the client clock past the deadline
keeps the neutral wait. Reload preserves it. No page errors occur.
- The first browser probe used an already-due monitor on a legacy
process fixture. That path consumed the schedule before the page loaded,
so the expected banner was absent. The corrected probe saves a future
monitor and advances only the client clock. It verifies the display; it
does not claim native scheduling acceptance.
- [CI run
42260573923](https://github.com/paperclipai/paperclip/actions/runs/42260573923)
passed for ee030bdf22. A later review found hidden PR links during an
active run; c3604bf4b4 repairs that case. That revision later needed a
master conflict repair before build/test CI could start. Final head is
7fe2417e4005378a8c2aee9451ae14f6f49c54ff; its required checks have
completed successfully.

The incident data establishes an active-run hold at the first due time.
It does not fully explain the later interval between terminal status and
monitor admission. This PR fixes the confirmed display defect. It does
not claim to repair an unproven lost wake.

- The review regression failed first in two cases with no PR links:
future and overdue GitHub monitors during an active run. After the
repair, 52 UI tests pass. They cover links on both surfaces, held check
actions, return to Check status, and removal of merged PR links. UI
typecheck and token gates also pass.

- Current master was merged at 7fe2417e40. Both the PR-link tests and
master’s quiet workspace-wait tests are retained. All 65 tests across
IssueMonitorBanner, issue-monitor, and IssueScheduledRetryCard pass. UI
typecheck, token gates, and diff checks pass. [Final-head
CI](https://github.com/paperclipai/paperclip/actions/runs/42267525907)
completed successfully: 55 successful checks, three skipped, and one
neutral. Build, Typecheck + Release Registry, and ci / verify passed.
Greptile reviewed this exact head at 5/5 with no actionable findings.
The prior reviewer thread is resolved; no review threads remain open.
The real Chromium acceptance above was performed at ee030bdf22; the
final link handling and merged workspace-wait cases are covered by the
mounted component tests and fresh CI.

## Risks

- The wait display depends on the page’s existing live-run query. A
stale query can briefly keep the wait visible.
- A monitor with no active run still shows an overdue warning. A blocked
task keeps its existing pause controls.
- No schema, scheduling, ownership, or authorization change.

## Model Used

OpenAI Codex, GPT-6 family, with repository inspection, code editing,
shell tools, and test execution. The exact serving snapshot and
context-window size are not exposed in this session.

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have searched GitHub for duplicate or related PRs and linked
them above
- [x] I have either (a) linked existing issues with `Fixes: #` / `Closes
#` / `Refs #` OR (b) described the issue in-PR following the relevant
issue template
- [x] I have not referenced internal/instance-local Paperclip issues or
links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip`
URLs)
- [x] My branch name describes the change (e.g. `docs/...`, `fix/...`)
and contains no internal Paperclip ticket id or instance-derived details
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [x] All Paperclip CI gates are green
- [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups
- [x] I will address all Greptile and reviewer comments before
requesting merge

---------

Co-authored-by: Paperclip <noreply@paperclip.ing>
2026-11-06 16:16:58 -06:00
ee6c101854 Reject failover backups behind the accepted event cursor (#19613)
A verified failover backup can still trail events already accepted by the controller. Compare the backup produced cursor with the registered controller state, or the supported local journal before registration, and reject stale files before remote sync. Keep the permanent replay-conflict classification ahead of generic Runner errors.

Validation: 1,192 native session and execution-driver tests and 10 workflow tests pass locally, together with the maintained low-memory Runner test project typecheck and fresh server declarations. All applicable checks on cd8c9cd07c are green (56 success, three skipped); exact-head Apex review is 5/5 with no unresolved findings. One e2e shard was retried after GitHub reported lost self-hosted runner communication, and the same-head rerun passed. No acknowledgement was lowered, provider replay authorized, or recovery files discarded.

Co-Authored-By: Claude Opus 5.5 <noreply@anthropic.com>
Co-Authored-By: Paperclip <Paperclip-Paperclip@users.noreply.github.com>
Co-Authored-By: Paperclip <noreply@paperclip.ing>
2026-11-06 13:55:43 -08:00
DottaandPaperclip 44c60c7221 Verify default skill sync through two real cold sleep cycles (#19191)
## Thinking Path

> - Paperclip is the open source app people use to manage AI agents for
work.
> - Automatic skill sources check upstream every five minutes.
> - The domain deadline contract can hand future work to a durable wake
alarm.
> - A saved deadline or a worker unit test does not prove that a stopped
tenant resumes the real producer.
> - This pull request checks the default cadence through the actual app
and a matching service checkout.
> - It checks two cold starts and three distinct persisted skill
revisions with real clocks.
> - The benefit is repeatable local evidence without changing production
timing or authority.

## Linked Issues or Issue Description

Refs: #19001, #17008, #17923.

This is a test and documentation follow-up to #19001. #19001 is now
merged; this PR targets master. Feature code remains in that merged
foundation. #17008 covers the earlier source worker change. #17923
covers separate skill-cache retention; this PR does not change that
behavior.

A scoped search of public PRs and issues found no duplicate
default-cadence cold-cycle acceptance test. No matching public issue was
found. The enhancement fields follow.

**Pre-submission checklist**

This improves checks for an existing feature. It adds no product
endpoint or execution authority. The public related-work search is
complete.

**What existing behavior does this improve?**

Verification of automatic skill-source updates across a durable idle
handoff and cold restart.

**Subsystem affected**

`server/` test fixtures and development documentation.

**Current behavior**

Domain tests cover claims, access and future deadlines. They do not
prove the full default-300-second path from ordinary source attachment
through signed tenant reports, durable alarms, stopped compute and a
changed persisted skill.

**Proposed behavior**

An opt-in launcher checks bootstrap first, then two full real-clock
cycles. Ordinary CI can run the transport controls without the host
fixture. The launcher-specific worker assertion runs only when prewire
is requested, and fails closed in that lane.

**Reason and benefit**

The test can detect an early refresh, a lost deadline, a stale proof, an
ACK after physical stop, a failed cold restart or a producer that does
not publish changed contents.

**Breaking changes**

None to product APIs, schema, cadence, authorization, claims or retry
policy. Existing maintenance-helper defaults stay unchanged.

**Additional context**

The opt-in host flow needs an authorized matching service checkout, its
normal compiled acceptance bridge, Node 22 and two owned PostgreSQL test
databases. The standalone controls do not need that service or
PostgreSQL. Roadmap review places this under existing Skills Manager and
Cloud deployment verification, not a new core feature.

## What Changed

- Add an opt-in default-cadence acceptance test and checked-in launcher.
- Reuse real server startup, managed tenant authority and the ordinary
project attachment route. Control only the remote Git snapshot boundary;
keep actual authorization, scanning, claims and publication.
- Use actual signed tenant routes and the matching service's gate, sleep
controller and PostgreSQL wake-alarm store. Stop and restart real app
children through a controlled local provider.
- Preload the Node transport guard before coordinator, worker and child
module work. Check worker-local and child PID, thread and source-hash
receipts. Keep caught unexpected transport attempts fatal.
- Require both persisted refresh times and actual upstream handler
timestamps to be at or after each original deadline.
- Join physical callbacks during bridge close, stop a late wake-created
child, and preserve the original cleanup budget. Add a real
IPC/HTTP-child counterfactual.
- Accept valid owned HTTP options paths without allowing Unix sockets or
unknown origins. Remove the unused App helper export.
- Add finite transport and launcher controls. Defer only the
launcher-specific parent assertion in vanilla CI. Keep all subprocess
controls default-runnable.
- Add optional child entry, preload and bounded pool settings to the
existing test helper. Preserve its defaults and the real observer test
body.
- Remove added explanatory comments under the contribution policy.
Preserve executable syntax, directives and literals.
- Document pinned setup, fresh owned databases, bootstrap and full
two-cycle commands in `doc/DEVELOPING.md`.

The diff against the intended base contains nine test/helper/launcher
files and this one document. It adds no production feature code or Cloud
source to the App repository.

## Verification

The latest two-file CI repair preserves both original failed jobs. A
newer master workflow introduced two required step inputs absent from
its extracted-step test environment; the faithful false/false inputs now
pass all five existing target-authorization cases, after an actual
missing-input counterfactual failed. A controlled socket case also
reproduces legal reuse of the released runner port; the fixture now
holds that reservation until the preview binds, releases it in finally,
and asserts distinct ports. All original retry/result/accounting
assertions and timeouts stay unchanged. The original Linux listener
owner remains unknown; the control proves this fixture collision
mechanism, not that original attribution. Fresh current-head full CI and
complete reviews are pending.


Current merge-integration candidate:
`f6f686103b7bfd0a4ab83085634c622af3896ecb`, a normal merge after #19001
landed, including actual master
`1c9767d323cf872a266962b9e6b4bd5cbcb57f1c`. All nine acceptance code
files are byte-identical to148a82e5; both parents' documentation
additions survive. Every other path equals actual master. The only
conflict was the old foundation's startup block; current master was
retained in full. Fresh exact-head CI and complete reviews are pending.
The local measurements below belong to their explicitly named revisions;
no fresh full614-second run is claimed.

Current candidate: `148a82e54c502759785407357001c6b50c1439dd`, normally
carrying the current base `8c912e1ba4fc66397a7341ade59373af8075068f`.
All nine acceptance code blobs remain identical to qualified repair
`e092746f4da181c8414c63be71474619a84b97e7`; documentation retains both
parents. The matching built service for the fresh bootstrap is
`389878364b42dd129835d263f91882c5774d5123`, using Node 22.23.4. The App
uses Node 24.22.2 and pnpm 9.15.4.

Use the exact controlled setup and commands in
[doc/DEVELOPING.md](doc/DEVELOPING.md#controlled-default-cadence-sleep-acceptance).
Fresh owned databases and the matching compiled service are
prerequisites; the launcher does not create a cluster or build
dependencies.

- **Current affected semantic check passed**, using actual native
TypeScript 7 and the current generated CI options/references (0.640
seconds). Normal declaration references passed in 11.726 seconds, with
source-matched SDK/shared/kernel/Runner prerequisites and the frozen
current lockfile.
- **Current guarded controls: 44 passed**, plus the same single explicit
real-PG observer deferral, in 4.790 seconds. The executing worker
checked its own global PID/thread/preload source hash and matching
receipt. Guard hash:
`7daf9ae7d2f26e8fcd389b1d560fac1d4e218a8304a2c58e49f646af108165bc`. No
unexpected attempts or PG sockets occurred. Vanilla controls on the
identical repair files passed 22 cases with one explicit launcher-parent
assertion deferral (2.044 seconds).
- **Real cleanup counterfactual:** unchanged old helper failed the
actual endpoint assertion in 1.568 seconds: its late HTTP child remained
reachable after close returned. The same fixed-helper case passed in
1.485 seconds: close waited, the child exited, the port was unreachable
and no IPC error occurred. The isolated driver records only the known
legacy closed-IPC error long enough to inspect cleanup; current helper
requires zero such errors. All recorded processes and ports were
independently checked empty.
- **Fresh current bootstrap passed once**, 16.159 seconds wall / 14.12
seconds Vitest / 12.237 seconds body. The ordinary enabled producer
persisted useful revision 1, cleared its lease and retained exactly
300,000 ms between success and original next deadline. A signed
current-generation report produced the matching
generation/operation-lock SQL ACK before physical child stop (ACK
06:54:02.020 UTC; stop signal 06:54:02.025 UTC). The alarm retained the
original D and D-120 eligibility. Both fixture databases ended with zero
sessions; the coordinator independently audited and normally removed
them. This bootstrap does not execute a due wake or the new v2/v3 timing
assertions.
- **Historical full two-cycle result remains 1/1 passed in 614.213
seconds wall**, at measured App
`74f7c012ca17ad0d7302d76403f5033affb1430b` and service
`2cb54f904031dcf69a32902cd853b43f74d6f301`. Two new processes published
distinct immutable v2/v3 at original D+115 ms and D+98 ms. Exact signed
SQL ACKs preceded both physical stops; real SQL D-120 claims caused both
cold starts. Features, claims and original business deadlines stayed
unchanged.
- Both historical 10.002-second quiet windows kept app SQL, upstream and
outgoing HTTP counts unchanged. Two awake PG sockets remained. Quiet
counts do not mean all connections closed.
- The stronger timing checks are additional assertions, not
retroactively executed results. Offline inspection of the original
receipts confirms persisted successes at D+115/+98 ms and earliest
upstream handler entries at D+44/+30 ms; all five requests in each
refresh group started after D. The exact new pre-sleep request counter
and dispatch-before-handler time were not independently recorded
historically.
- Source review found 19 critical automatic Git producer/runtime files
identical to the measured App. The current active cache helper change
does not run on automatic Git publication and adds no pool. The matching
service carries unchanged measured helper/sleep/controller/alarm seams
through its normal master merge. The current bootstrap and focused
controls qualify the changed cleanup/guard and parent integration. No
fresh current-head 614-second pass or whole-tree identity is claimed.
- Runtime is serialized: worker 1, per-pool limits at most 4, configured
App potential 10 + shared service pool 2 + one observer against server
max 40. Current bootstrap point samples observed at most 3 owned clients
plus the observer; those samples are not a continuous aggregate peak.
App/service guard peaks were 2 each, with zero remaining sockets at
cleanup.

Failures remain accounted for. The first historical bootstrap cleanup
masked an unknown primary error. Later attempts exposed missing
fixture-owned domain metadata and lost origin snapshots; test-only
ownership/cleanup corrections preserved the original assertions and
timeouts. The new causal driver first lacked a final observation, then
encountered sandbox bind EPERM, then exposed the old closed-IPC error;
only the final real endpoint failure above is labeled the cleanup
counterfactual. An offline dependency miss and a generator-cleared
ignored compiler config were retained and corrected without weakening
compiler options. The former inherited policy failure (397 findings) is
resolved by the genuine current-master base/scanner, with zero findings
and seven scanner tests; no unrelated UI site was edited and the gate
was not relaxed.

Historical real TCP observer coverage passed 1/1 in 3.688 seconds.
Comment-only and opt-in-selection carries remain documented in prior
evidence; self-hash changes are metadata exceptions with fresh
executing-worker checks.

The full workspace typecheck, test, build and browser commands were not
run locally for this test-only slice. The current base passes its full
exact-head CI and Greptile 5/5; this leaf now has all 56 exact-head
check runs terminal (54 success, one neutral, one skip), the additional
legacy security status passing, complete current Greptile 5/5 and
Ponytail 5/5 reviews, and all four review threads resolved across all
pages. No live provider or deployed host/database suspension was
exercised.
## Risks

- The host test requires a matching service checkout and compiled
bridge. An unrelated service revision is not a valid substitute.
- Controlled localhost Git, S3 and physical process operations do not
qualify deployed Railway or Neon suspension, external permissions or
provider uncertainty.
- The Node guard does not prove native subprocess transport isolation.
Only finite local Git metadata and Node version commands were needed.
- Two short SQL/HTTP quiet windows do not establish strict 90-second
host acceptance. Separate plugin-host LISTEN, MCP wake and other domain
gaps remain open.
- Explicit test URLs are destructive fixture inputs. Use fresh, owned
`_test` databases. The launcher does not start a cluster or choose a
database implicitly.
- Passing CI and review do not qualify deployed suspension; the current
proof boundaries above still apply.

> For core feature work, check `ROADMAP.md` first and discuss it in
`#dev` before opening the PR. This PR adds verification to the existing
feature in its base.

## Model Used

OpenAI `gpt-6.1-sol` assisted with implementation, repository review and
local code execution. OpenAI Codex, based on GPT-6, performed managing
review and integration. The context-window sizes and exact served
backend snapshots were not exposed.

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have searched GitHub for duplicate or related PRs and linked
them above
- [x] I have either (a) linked existing issues with `Fixes: #` / `Closes
#` / `Refs #` OR (b) described the issue in-PR following the relevant
issue template
- [x] I have not referenced internal/instance-local Paperclip issues or
links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip`
URLs)
- [x] My branch name describes the change and contains no internal
Paperclip ticket id
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [ ] All Paperclip CI gates are green — fresh merge-head gates pending
- [ ] Greptile is 5/5 with no open P2s, recommendations, or follow-ups —
fresh merge-head review pending
- [x] I will address all Greptile and reviewer comments before
requesting merge


### Current master reconciliation (2026-11-06)

Merged actual master `e28158b353fd274f0322be76d62cd223e0df599f`
normally. All nine qualified acceptance code files and the held-port
repair remain byte-identical. Upstream independently landed the workflow
input fix in #19602; the fixture now uses that exact upstream version
once, avoiding duplicate object keys in a squash merge. All other master
changes are preserved. The earlier two-cycle local evidence remains
source-specific; no fresh 614-second run or deployed suspension is
claimed. This new head requires fresh CI and bot reviews.

### Actual combined-tree typecheck failure and repair

CI job `128156887548` failed with TS1117 at workflow-target.test.ts:22:
two independently landed master fixes declared the same `IMAGE_ONLY` and
`TESTOPS_REQUESTED` keys. The complete original log is retained. A
further normal master merge now removes the duplicate declarations,
retaining exactly one false/false pair and every original assertion. All
nine qualified acceptance code paths and the held-port repair remain
byte-identical; unrelated master changes are preserved. This is a
concrete compiler failure and source repair, with fresh exact-head
CI/reviews required.

---------

Co-authored-by: Paperclip <noreply@paperclip.ing>
2026-11-06 15:55:05 -06:00
e482f0f632 fix(server): shed only retryable object-journal reads under load (#19176)
Client polling can exhaust the shared object journal queue and reject log persistence. Bound ordinary object-log and trace reads, keep persistence and internal verification queued, and return retryable 503 responses when reads are busy. Leave feedback exports unsent until every log page is available.

Validation: 72 latest-master affected tests and 10 workflow tests pass locally, with the workflow fixture passing strict TypeScript checks. The preceding broader run passed 280 server tests with two opt-in S3 skips. All applicable checks on d0a937768d are green (56 success, three skipped); exact-head Apex review is 5/5 with no unresolved findings. Background persistence still has no fixed queue bound during a prolonged storage outage.

Co-Authored-By: Claude Opus 5.5 <noreply@anthropic.com>
Co-Authored-By: Paperclip <noreply@paperclip.ing>
2026-11-06 13:47:25 -08:00
DottaandPaperclip c09fb60ca6 fix(recovery): retain worker-stop audit in preparation retries (#19612)
## Thinking Path

> - Paperclip is the open source app people use to manage AI agents for
work.
> - Recovery must preserve saved files before it admits another
execution.
> - A failed preparation can need a verified stop of its previous
workspace worker.
> - Recovery keeps that verified stop receipt in the run profile for
audit.
> - The preparation retry guard treats the retained receipt as unknown
execution evidence.
> - This pull request recognizes a valid same-run audit receipt while it
retains all current execution and file checks.
> - A saved Retry can then continue once after recovery completes.

## Linked Issues or Issue Description

**What happened?**

A native preparation failed before provider dispatch. The recovery
worker verified that the previous workspace worker had stopped and saved
its files. The same HTTP Retry stayed deferred because the run profile
retained `nativeWorkspaceOwnerStopProof`.

**Expected behavior**

The saved Retry should continue once after all preparation, stop, file,
ownership, and authorization checks pass. The old run and its audit
receipt should remain unchanged.

**Steps to reproduce**

1. Fail native preparation with a retained remote workspace and no
provider activity.
2. Let the recovery worker acquire the old workspace owner through
verified platform stop evidence.
3. Submit one HTTP Retry and let preservation complete.
4. Observe that the old guard retains the retry hold even after
saved-file verification passes.

**Paperclip version or commit**

Reproduced against `d728be8fbf`. Related work: #18908, #19021, #19026,
and #19466. This change covers the retained workspace-worker stop audit
left by a later repair.

## What Changed

- Add a typed reader for a host-persisted same-run worker-stop audit
receipt. Keep signature and expiry validation at ownership acquisition.
- Recognize only that validated audit field in failed-preparation
settlement. Keep unknown profiles and active owners blocked.
- Exercise real preservation, HTTP Retry delivery, native dispatch,
saved files, accepted results, and task completion. Add malformed,
foreign-run, unstopped-worker, and active-owner cases.
- Document the distinction between retained audit evidence and current
execution authority.

## Verification

- Failing before the fix: the current-worker preservation case passed;
the stopped-worker case produced zero successor runs after the same
Retry, where one was expected.
- Passing after the fix: 47 recovery cases, 10 native
dispatch/preservation cases, and 6 platform-proof tests. The two
preservation success cases overlap between the first two groups.
- Server typecheck passed all seven layers after the final test changes.
The Runner and SDK dependencies were built in this isolated worktree.
- Final comment-free commit `44f8f33f8d917dddb51852283a479786102eab4d`:
a fresh combined run passed all 61 affected cases in 67.92s. Fresh
server typecheck passed all seven layers.
- The earlier `95d0376c` combined run passed 60 cases and hit one
`socket hang up` in the existing `catalog_provider_warning` HTTP test.
That case passed in a bounded isolated run (12.48s), and the final
61-case combined run passed. The socket failure remains recorded as an
intermittent HTTP harness limitation. No retry or weaker assertion was
added.
- Final commit `44f8f33f8d917dddb51852283a479786102eab4d` completed all
required CI gates: 57 checks succeeded, 3 intentional skips, and the
advisory Paperclip review is neutral with a substantive 5/5 verdict.
Greptile is 5/5 and there are no unresolved review threads. [Final CI
run](https://github.com/paperclipai/paperclip/actions/runs/42293625696).
The follow-up commit only removes six new code-comment lines to follow
CONTRIBUTING.
- The native provider and signed platform API are controlled test
boundaries. The tests use real PostgreSQL, recovery, ownership, file
persistence, retry admission, dispatch, and finalization services.
Deployed recovery remains unverified until normal rollout.

## Risks

- The main risk is mistaking an audit receipt for current stop
authority. The reader checks its exact shape and run binding. The
receipt cannot replace stopped leases, saved-file receipts, settled
preparation, current authorization, or the absence of an active owner or
provider evidence.
- The negative matrix runs with the audit field present. Provider
activity, unknown usage, bad file receipts, Stop, actor changes, and
unsettled leases still block continuation.
- No schema or migration change is required.

## Model Used

OpenAI GPT-6 in Codex. The exact deployment model ID and context-window
size are not exposed in this session. Used reasoning, code editing,
shell execution, and test tools.

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have searched GitHub for duplicate or related PRs and linked
them above
- [x] I have either (a) linked existing issues with `Fixes: #` / `Closes
#` / `Refs #` OR (b) described the issue in-PR following the relevant
issue template
- [x] I have not referenced internal/instance-local Paperclip issues or
links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip`
URLs)
- [x] My branch name describes the change (e.g. `docs/...`, `fix/...`)
and contains no internal Paperclip ticket id or instance-derived details
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [x] All Paperclip CI gates are green
- [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups
- [x] I will address all Greptile and reviewer comments before
requesting merge

---------

Co-authored-by: Paperclip <noreply@paperclip.ing>
2026-11-06 15:36:23 -06:00
DottaandClaude Opus 5.5 02a2299173 feat(codex): default Codex to gpt-6.1-sol, half the gpt-5.6-sol price (#19623)
## Thinking Path

> - Paperclip is the open source app people use to manage AI agents for
work
> - Codex agents run through Paperclip Runner or the legacy
`codex_local` harness, and the runner E2E suites run paid Codex cells
> - The shared Codex default and many selections preferred `gpt-5.6-sol`
> - The reviewed OpenAI rate card in
`server/src/services/codex-pricing.ts` (`openai-standard-2026-09-30`)
prices `gpt-6.1-sol` at $2 input / $0.10 cached / $10 output per 1M
tokens, and `gpt-5.6-sol` at $4 / $0.40 / $20
> - So every default run and every paid Codex eval cell cost twice as
much as necessary
> - This pull request moves every place that prefers or selects
`gpt-5.6-sol` to `gpt-6.1-sol`, and keeps historical facts, rate cards
and compatibility fallbacks on `gpt-5.6-sol`
> - The benefit is half the token price for new default Codex agents and
for the Codex E2E and TestOps cells

## Linked Issues or Issue Description

**What existing behavior does this improve?**
The default Codex model for new agents and the Codex model that the
runner E2E suites and TestOps plans select.

**Subsystem affected**
Adapters (`adapter-utils`, `codex-local`), server native runtime
fallback, UI AI connection pools, Paperclip Runner devtools and live
evals, runner E2E catalog and TestOps mappings.

**Current behavior**
New Codex agents without an explicit model store `gpt-5.6-sol`. The
runner E2E `runner-codex` profile, the Reliability `queue-steer` plan
cell, the Product regression TestOps mapping and the ACPX Codex
qualification selection all use `gpt-5.6-sol`.

**Proposed behavior**
They use `gpt-6.1-sol`. Existing agents that store a model keep it.
`gpt-5.6-sol` stays selectable.

**Reason and benefit**
`gpt-6.1-sol` costs half as much per token on the in-repo reviewed rate
card. The current OpenAI pricing page (retrieved 2026-11-06) shows the
same short-context rates and also lists long-context rates of $4 / $0.20
/ $15 for `gpt-6.1-sol` against $8 / $0.80 / $30 for `gpt-5.6-sol`.

**Breaking changes**
None for stored configurations. See Risks.

## What Changed

Changed defaults and selections (all now `gpt-6.1-sol`):

- `PAPERCLIP_RUNNER_DEFAULT_MODELS.codex` in
`packages/adapter-utils/src/paperclip-runner-permissions.ts`. This also
changes `DEFAULT_CODEX_LOCAL_MODEL`,
`resolvePaperclipRunnerModel("codex", …)`, runner config normalization,
`codex_local` → Paperclip Runner conversion, the UI new-agent and
agent-config defaults, the composer default model and the public MCP
effort lookup.
- `codex-local` `models`: the 5.6 entry is now the literal
`gpt-5.6-sol`, because it used to be `DEFAULT_CODEX_LOCAL_MODEL`. The
list order and contents do not change.
- AI connection pool: a new OpenAI member profile uses
`PAPERCLIP_RUNNER_DEFAULT_MODELS.codex` instead of a hard-coded
`gpt-5.6-sol`.
- Paperclip Runner devtools ACPX Codex default and preset, the
`runner-codex-sol` local provider smoke, and the `acpx-codex-sol` live
workflow candidate.
- `tests/acpx-qualification-models.ts` Codex selection (runner E2E and
runner acceptance ACPX Codex profiles).
- Runner E2E: the `runner-codex` profile follows the default, so all
native Codex cells move. This includes the `runner-codex` cells among
the 52 standard `everyday-workflows` cells and the seven Codex
reliability cells. `runner-codex-mini` stays on `gpt-5.4-mini`. The
Reliability plan `queue-steer` `steeringProfile` is now
`['runner-codex', 'gpt-6.1-sol']`. Its executionId
(`everyday-workflows.runner-codex.daytona.queue-steer`), its fullName
and its TestOps case identity do not change. No separate profile is
necessary.
- `product-regression-testops.mjs`: the declared model for every
`runner-codex` case is now `gpt-6.1-sol` (it was already that for
`configured-repository`).
- `tests/runner-e2e/installed-cli.ts`: the credential-free installed
startup proof opens a session on the default model.
- `tests/runner-e2e/scheduled-prices.json`: add a `gpt-6.1-sol` price
(`openai-standard-2026-11-06`, including 30m/12h cache writes and
long-context rates from the OpenAI pricing page). The weekly scheduled
Codex cells need an exact price for their model, or admission fails
closed.
- Storybook: the composer model picker fixtures, the connection pool
stories and host, and the agent settings preview show `gpt-6.1-sol` as
the default.
- Docs: `doc/DEVELOPING.md` (the Codex conversion default) and
`tests/runner-e2e/EVERYDAY-WORKFLOWS.md` (local matrix, reliability
extras, `queue-steer` row).
- Tests that assert the default now expect `gpt-6.1-sol`. New
assertions: the default has the `0.159.0` CLI floor, the compatibility
fallback is floor-free, the `queue-steer` plan cell runs `runner-codex`
on `gpt-6.1-sol`, and all native Codex everyday cells (standard and
reliability) use `gpt-6.1-sol`.

Deliberately kept on `gpt-5.6-sol`:

- Rate cards: `server/src/services/codex-pricing.ts` and
`packages/paperclip-runner/src/evals/model-pricing.ts`. Old receipts
need them. (The runner eval rate card has no `gpt-6.1-sol` entry. An
unpriced candidate is reported as unpriced, not as zero. I did not add a
rate there because that card has its own version and source.)
- The remote Codex CLI compatibility fallback. A new
`CODEX_LOCAL_COMPATIBILITY_FALLBACK_MODEL = "gpt-5.6-sol"` replaces the
default in `codexModelFallbackCandidates`. `gpt-6.1-sol` needs Codex
0.159.0 or newer, so it cannot be the floor-free last resort. Fallback
behavior is unchanged.
- `tests/runner-e2e/provider-usage.ts`: the implicit request
cache-policy attribution stays qualified only for `gpt-5.6-sol`. I did
not verify that policy for `gpt-6.1-sol`. A `gpt-6.1-sol` response that
omits the write-TTL split keeps its cache-write cost unknown, which is
the existing behavior for unqualified models.
- `tests/runner-e2e/scheduled-measurements.json`: historical
`gpt-5.6-sol` measurements. They no longer match the current suite
definitions, so the forecast reports them as historical only. The
forecast tests now build their synthetic cohorts on the current
definition hash.
- Model catalogs that list `gpt-5.6-sol` as available (`codex-local`,
`cursor-local`, `opencode-local`, Speko voice diagnostics, Pi picker
fixture).
- The `gpt-5.6` → `gpt-5.6-sol` alias for old stored configs.
- Dated or evidence docs: `doc/plans/*`, `doc/adapter-model-audit-*`,
`QUALIFICATION-*`, `doc/connections/MEMORY.md`,
`doc/connections/TASK-REVIEWS-VERIFICATION.md`,
`tests/runner-e2e/CHAT-FEATURES.md`, the Slack eval evidence, and the
S49 soak signature text (the soak failure happened on `gpt-5.6-sol`).
- Test fixtures that parse, price, migrate or round-trip an existing
`gpt-5.6-sol` value (Rust runner tests, driver tests, pricing tests,
stored-config tests, stories that show an existing agent).

## Verification

- `npx vitest run` on every server, UI, adapter-utils and codex-local
test file that mentions `gpt-5.6-sol` or the default, plus all of
`packages/adapter-utils` and `packages/adapters/codex-local`: 5,483
passed. Three timeouts under load (`sandbox-managed-runtime`,
`acp.quota`) passed when rerun.
- `packages/paperclip-runner`: `vitest run` for `src/eval`, `src/evals`,
`src/drivers/acpx`, `src/drivers/codex`, `src/cli`, `src/contracts`,
`src/backends`: 2,641 passed.
- `node --test tests/runner-e2e/reliability-testops.test.mjs
tests/runner-e2e/product-regression-testops.test.mjs`: 28 passed.
- `node tests/runner-e2e/run-unit.mjs`: all model, catalog, reliability,
scheduled and TestOps tests pass. Failures remain only in
`copilot-protection-flow`, `denied-target-isolation-flow`,
`pi-controls-flow`, `workflow-target` and `unit-launcher`. These five
also fail on unmodified master in this local environment (filesystem
watch and git environment), and they do not touch models.
- `vitest run --config tests/runner-acceptance/vitest.config.ts`: 19
passed.
- `pnpm test:e2e:runner -- --list --suite everyday-workflows --group
reliability`: the seven `everyday-workflows.runner-codex.daytona.<case>`
cells show `gpt-6.1-sol` with `OPENAI_API_KEY,DAYTONA_API_KEY`.
`--matrix-json` gives 16 reliability cells with the same credentials as
before. `--list --all` shows no `gpt-5.6-sol` cell.
- Typecheck: `adapter-utils`, `adapter-codex-local`, `server`, `ui`,
`paperclip-runner` (TypeScript), and `pnpm test:e2e:runner:typecheck`.
- `pnpm check:token-gates`: clean.
- Not run: paid cells, Rust tests (no Rust change), the browser suites,
and the full `pnpm -r typecheck` / `pnpm build` (CI runs them).

## Risks

- Agents without an explicit model change model on their next save or
normalization, and Paperclip Runner rows with a blank model use
`gpt-6.1-sol` at execution. Stored models, including `gpt-5.6-sol`, are
never rewritten. No migration is necessary.
- `gpt-6.1-sol` needs Codex CLI 0.159.0 or newer with ChatGPT sign-in.
The runner pins `@openai/codex@0.160.0`. On a remote target with an
older image CLI, the existing compatibility check falls back to
`gpt-6-sol` and then `gpt-5.6-sol`, and that probe now runs for
default-model agents too. A legacy `codex_local` agent created with the
new default on a host with an older Codex CLI gets the existing
actionable "upgrade Codex" Test result.
- Qualification: the native Codex profile uses `adapter_constant` model
qualification, so it follows the default. No qualification gate is
dropped. The ACPX Codex qualification selection moves to `gpt-6.1-sol`.
Its next qualification run uses the new model. The provider-usage
cache-policy attribution stays limited to `gpt-5.6-sol`.
- Runner E2E history: the Codex cells change their suite definition
hashes, so earlier `gpt-5.6-sol` results are a separate cohort and do
not count as current.
- The `gpt-6.1-sol` scheduled price uses the file's existing `expiresAt`
(2026-11-19). It needs the same review as the other entries before then.
- No `.github/` change. The Reliability queue-steer cell keeps the
`runner-codex` profile id, so the existing workflow credential and setup
steps still match.

> For core feature work, check [`ROADMAP.md`](ROADMAP.md) first and
discuss it in `#dev` before opening the PR. Feature PRs that overlap
with planned core work may need to be redirected — check the roadmap
first. See `CONTRIBUTING.md`.

## Model Used

- Claude Opus 5.5 (Anthropic), model ID `claude-opus-5-5`, running in
Claude Code with tool use (shell, file edits, web fetch of the OpenAI
pricing page).

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have searched GitHub for duplicate or related PRs and linked
them above
- [x] I have either (a) linked existing issues with `Fixes: #` / `Closes
#` / `Refs #` OR (b) described the issue in-PR following the relevant
issue template
- [x] I have not referenced internal/instance-local Paperclip issues or
links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip`
URLs)
- [x] My branch name describes the change (e.g. `docs/...`, `fix/...`)
and contains no internal Paperclip ticket id or instance-derived details
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [ ] All Paperclip CI gates are green
- [ ] Greptile is 5/5 with no open P2s, recommendations, or follow-ups
- [x] I will address all Greptile and reviewer comments before
requesting merge

Related: #19604 (commits the Reliability TestOps identities; this PR
changes only `steeringProfile` in the same file).

🤖 Generated with [Claude Code](https://claude.com/claude-code)

Co-authored-by: Claude Opus 5.5 <noreply@anthropic.com>
2026-11-06 15:35:34 -06:00
Nicky LeachandClaude Opus 5.5 a7d3d4b78c fix(runner): rotate local and external authority through one resumable path (#19547)
## Thinking Path

> - Paperclip is the open source app people use to manage AI agents for
work
> - The Paperclip Runner moves a native session from one run to the next
with an authority rotation, for Codex and for every ACPX provider
> - A rotation archives the prior run's controller state under
`authority-epochs/` and archives the Runner state, locally or on an
external Runner host
> - If the run fails after the rotation but before the new Runner
starts, retry preparation restores the prior run's controller checkpoint
into the session root
> - The retry then finds an active `control-plane` next to the archive
marker and fails with `native_runner_authority_archive_conflict`. Every
later run for the session fails the same way
> - The local and external rotations were two copies of the same steps,
with different retry rules, and the sandbox archive script had a third
set of rules
> - This pull request gives every provider and Runner placement one
resumable rotation path, with the same retry rules for controller state
and Runner state
> - The benefit is that one failed startup no longer makes a native
session unusable

## Linked Issues or Issue Description

No public issue exists. Bug description:

**What happened?**
A warm Codex session on an external (plugin) Runner failed its first
attempt after the authority rotation finished. The two automatic retries
both failed with `native_session_recovery_failed: Error:
native_runner_authority_archive_conflict`, and the run stopped. On disk,
the session root had
`authority-epochs/epoch-<key>/control-plane/control-plane-state.json`
and an active `control-plane/control-plane-state.json` with the same
identity (in this case, also the same sha256). The remote Launcher had
already archived the Runner state under the same key.

**Expected behavior**
A retry resumes the interrupted rotation. The rotation already supports
this when only the archive marker exists.

**Steps to reproduce**
1. Run a native Codex or ACPX session on an external Runner.
2. Start a new run for that session. Make the new Runner fail to start
after the rotation finishes.
3. Let the run retry. Retry preparation (`restoreWarmRunnerdController`
/ `restorePerTurnRunnerdController` →
`restoreNativeControllerProjections`) restores the prior run's
controller checkpoint into the session root.
4. The retry fails with `native_runner_authority_archive_conflict`. All
later runs for the session also fail.

The new `authority rotation after the prior controller state is
restored` tests reproduce steps 2–4 directly.

**Paperclip version or commit**
`master` at 35280516c0.

**Deployment mode**
Hosted, with a remote (plugin) Runner environment.

**Agent adapter(s) involved**
Codex (native Paperclip Runner). ACPX providers use the same rotation
code.

## What Changed

- **One rotation path.** `rotateAuthorityEpoch` replaces
`rotateLocalAuthorityEpoch` and `rotateExternalAuthorityEpoch`. The only
difference between Runner placements is a `RunnerStateArchive` (`read`,
`archive`):
- `localRunnerStateArchive(root)` for Runner state under `<root>/runner`
  - `#externalRunnerStateArchive()` for a plugin task or a sandbox host
- **One caller.** The transport chooses the rotation source (the live
control plane, or the latest archive), then makes one call. Locally
owned state is still quarantined on failure.
- **Committed rotation, normalized once.** Retry preparation restores
the prior run's controller checkpoint, but an earlier attempt may
already have archived that authority and its Runner state.
`takeCommittedRotation` runs right after the transport reads the control
plane. When the epoch archive for the active copy's exact identity
exists, it removes the restored copy and continues on the archive-only
path. Every later check (the warm-handoff evidence read, the
source-attachment settlement read, and the rotation) then sees the state
the rotation committed, instead of reading retired live Runner state. A
copy that still holds an unfinished warm transition, staged attachment,
or pending `run.attach` fails closed.
- **Restored controller state.** When the epoch archive exists, an
active control plane with the same schema and the exact archived
identity is a copy of authority that the rotation already retired. The
rotation removes it and resumes from the archived snapshot. This
compares identity, not bytes, because a checkpoint restore serializes
the state again and drops fields such as `ackedSourceSeq`. Any other
active state still fails closed.
- **Duplicate Runner state.** Local Runner state now follows the
computer Launcher's rules: move it, accept it already archived, drop a
byte-identical live copy beside the archive, or fail closed. The local
archive also checks that the live state is suspended before it moves it.
- **Sandbox archive script.** The script is now
`REMOTE_RUNNER_AUTHORITY_ARCHIVE_SCRIPT` and follows the same rules. It
uses `cmp` for the duplicate check and fails closed when `cmp` is not
available.
- **Sandbox host preparation after a resumed rotation.** A resumed
rotation archives the remote Runner state without preparing the host
first. When `archiveExternalRunnerState` succeeds, the server now
records the archived snapshot path. The launch's host preparation
(`inspectRemoteHarnessState`) validates that snapshot instead of the
missing live `runner-state.json`, with the same provider-state and
identity checks. Only these host preparation checks use the archived
snapshot; close checkpointing and backup-restore verification always
inspect the live `runner-state.json`. The SSH staging check treats it as
present, so retired state is not staged back.
- **Host preparation.** The external archive prepares its host only when
it reads live Runner state. Before, only one of the two caller branches
prepared the host. A resumed rotation finds the state already archived,
and preparing again could stage it a second time.

## Verification

- `npx vitest run src/live/runnerd-codex-transport.test.ts -t
"rotation"` in `packages/paperclip-runner`: 16 passed.
- External and local rotations with a byte-identical, a re-serialized,
and an other-authority restored control plane. The first two resume from
the archived snapshot. The third fails closed and keeps the copy.
- Local rotation with an identical duplicate Runner state (resumes) and
a different duplicate (fails closed and keeps it).
- The existing crash-before and crash-after remote archive retry cases.
- Before the source change, the byte-identical external case failed with
`native_runner_authority_archive_conflict`.
- `npx vitest run src/live/runnerd-codex-transport.test.ts -t "transport
retry after a committed rotation"` in `packages/paperclip-runner`: 4
passed. These go through the transport's real start path. A completed
warm handoff and a source attachment hook now resume from the archive;
before the normalization, both read the archived live Runner state and
failed. An unfinished warm transition and a pending attachment fail
closed; before, the pending attachment was silently dropped.
- `npx vitest run
src/services/native-runtime/native-session-executor.test.ts -t "remote
authority archiv"` in `server`: 6 passed. Five new cases run the real
archive script with `sh` against temporary files: a new archive, an
existing archive, an identical duplicate, a different duplicate, and no
state. The existing mocked archive test also passes.
- `npx vitest run
src/services/native-runtime/native-session-executor.test.ts -t "resumed
rotation archived"` in `server`: 2 passed. A resumed sandbox with a
retained backup goes through the real archive script and host
preparation. It failed with `runner_harness_state_mismatch:
resumed_unavailable` before the host preparation fix. A settled close
checkpoint with no live Runner state then fails closed with
`runner_remote_checkpoint_incomplete`, rather than checking the archived
snapshot. Without a completed rotation, a missing live state still fails
closed.
- `pnpm run typecheck:typescript` in `packages/paperclip-runner` and
`node scripts/typecheck-layers.mjs` in `server`: pass.
- The full `runnerd-codex-transport*.test.ts`,
`cursor-cloud-runner-launch.test.ts`, and adoption test files fail on
the same 110 tests with and without this change. These tests need the
built `paperclip-runnerd` binary, which needs `cargo`. `cargo` is not
installed locally, so CI covers them.

## Risks

- The change is only on the rotation path. A rotation that has no
archive marker behaves as before: it reads and checks live Runner state,
then archives the control plane.
- A rotation removes an active control plane only when an archive for
that exact identity exists and the active copy has the same schema and
identity. A new run's authority has a different identity, so it cannot
match.
- On a resume, the rotation now uses the archived controller snapshot,
not the caller's copy. The archive is the exact pre-rotation state. A
checkpoint restore can omit fields from it.
- An external Runner whose options define `readRunnerState` and
`archiveExternalRunnerState` but not `prepareExternalRunnerState` can
now rotate a live control plane. Before, that branch required the
prepare hook. The plugin and sandbox drivers define all three.
- The sandbox duplicate check needs `cmp`. A host without `cmp` fails
closed as before.

## Model Used

- Claude Opus 5.5 (`claude-opus-5-5`), Anthropic, used through Claude
Code with tool use (shell, file edits, test runs). It diagnosed the
failure from the run events, the server logs, and the on-disk controller
and Launcher state, then wrote the fix and the tests.

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have searched GitHub for duplicate or related PRs and linked
them above
- [x] I have either (a) linked existing issues with `Fixes: #` / `Closes
#` / `Refs #` OR (b) described the issue in-PR following the relevant
issue template
- [x] I have not referenced internal/instance-local Paperclip issues or
links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip`
URLs)
- [x] My branch name describes the change (e.g. `docs/...`, `fix/...`)
and contains no internal Paperclip ticket id or instance-derived details
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [x] All Paperclip CI gates are green
- [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups
- [x] I will address all Greptile and reviewer comments before
requesting merge

🤖 Generated with [Claude Code](https://claude.com/claude-code)

---------

Co-authored-by: Claude Opus 5.5 <noreply@anthropic.com>
2026-11-06 13:27:55 -08:00
2e35730637 feat(chat): receive sealed Slack events through the current SDK owner (#19019)
## Thinking Path

> - Paperclip manages AI agents and their work.
> - Slack connectors turn authenticated messages into company work.
> - Direct callbacks need an awake tenant.
> - Cloud can retain authenticated asynchronous events until the tenant
wakes.
> - Replay must preserve the original callback proof and current
endpoint authority.
> - Configuration changes must retain registration responsibility
through failures.
> - This PR enrolls verified Slack identities and drains sealed events
through the normal SDK owner.

## Linked Issues or Issue Description

**Subsystem affected**

Server chat connectors and signed Cloud connector delivery.

**Problem or motivation**

Direct Slack Events API delivery depends on an awake tenant. Broker
outages, lost responses and configuration changes must preserve delivery
and registration responsibility. Enrollment failures must also leave
other connector events able to drain.

**Proposed solution**

Stage nonsecret enrollment or retirement intent inside the local
configuration transaction. Let the existing connection-event owner
perform broker requests and retries. Replay sealed events through the
current Slack SDK with their original authentication evidence.

**Alternatives considered**

An early acknowledgment for every callback changes command and modal
semantics. A second delivery ledger duplicates existing ownership.
Reusing a new stack identity to retire old registrations crosses an
authorization boundary.

A companion Cloud broker change is required. Related setup fixes: Refs
#18837, Refs #18878. Kickoff searches found no competing async
enrollment consumer. The ROADMAP's connector setup and access controls
stay in place.

## What Changed

- Persist enrollment and credential-free retirement intent before local
configuration commits. Broker failure does not make a completed pause or
removal look unsuccessful.
- Bind company, endpoint, connection, public ID, generation and
authorized actor. Preserve lost-response responsibility and recover only
the supported same-instance configuration outage.
- Permit an explicit move to a new authorized stack only after confirmed
old retirement. Keep the old identity until the new broker receipt
matches the current intent and generation.
- Show permanent signing-credential failures as attention. Preserve
transient retries and reject uncertain inbound authentication before SDK
admission.
- Drain events and acknowledgments before enrollment reconciliation.
Persist a bounded retry on the exact busy intent so other due endpoints
can enroll or retire. Preserve current custody under concurrent changes.
- Stage retirement in the Apps removal transaction too. Archive the
endpoint and connection, retain the original subject and instance, then
revoke credentials. Retirement does not need the deleted Slack
credential.
- Acknowledge a malformed sealed Slack receipt as invalid once. Keep
actual broker outages on the retry path.
- Run the real configuration, SDK ingress, generation fences and public
Apps removal paths in the default SQL suite. Keep Vitest transport
helpers outside production services.
- Preserve original callback bytes, signature, time and public URL
evidence. Use the existing transactional chat-delivery ledger for
redelivery.
- Provide a checked-in prewire guard and launcher using the current Node
executable. Add broker, worker, SDK, SQL and controlled-process
acceptance.
- Stabilize AI account summaries by ID and grant ID. This fixes a CI
migration-repeat equality failure without changing SQL, authorization or
reconnect behavior.
- Open the four configured database connections before the enrollment
test freezes its clock. Keep all 35 original assertions and all
timeouts.
- Measure status-card dispatch entry before its mock does database work.
Keep the original strict 500 ms bound and check any still-armed earlier
deadline. Bound that fixture's pool to four connections.

## Verification

- Candidate: `54fa701d41b4ced62f4ff338d39b946015670ae3`. Normal merges
preserve master `47027e7` and all owned changes. A read-only merge
assessment against fetched master `cb5d7e44` is conflict-free. The only
overlapping file has separate AI test additions. The branch has not
merged that later master; fresh remote checks must validate the current
PR test tree.
- At this head, normal server production typechecking and declaration
emission passed in 35.24s. The affected actual CI test shard passed in
6.27s. Other unchanged CI layers, 92 affected pure controls and 12 guard
controls retain their source-matched results.
- All **15 default real-PostgreSQL cases passed in 34.66s**, with no
skips or filtering. They cover normal configure and SDK ingress,
rollback, stale generations, malformed receipts, busy-lease fairness,
concurrent intent custody, unknown errors, and public Apps removal.
Removal tests check actual credential revocation, retained retirement
through outage and repeat removal, one ordinary retry and confirmed
retirement, transaction rollback and foreign-company refusal.
- The public removal counterfactual failed before the fix: archival and
credential revocation passed, but the inactive intent was absent. The
same test source passed after the staging call. Separate counterfactuals
also reproduced busy-endpoint starvation and malformed-receipt retries.
Original failures remain retained.
- The paired broker/SDK/process journey passed in 31.98s at ancestor
`0324c011`. It preserves callback proof, lost-ACK redelivery, exactly
one comment, one delivery and one successful controlled process. Its
test, producer, SDK, guard and runtime bytes are unchanged. The new
public Apps archive branch is not called by that journey; its evidence
carries on that checked basis.
- The new SQL cases need no companion Cloud checkout. Normal CI runs
them with the repository fixture. For an existing dedicated PostgreSQL
fixture, set `PAPERCLIP_SLACK_OWNER_TEST_DATABASE_URL` and
`PAPERCLIP_TEST_POSTGRES_ADMIN_URL`, then run `node
server/scripts/test-slack-cloud-owner.mjs` with Node24. The optional
paired launcher still requires the normally built companion Cloud
checkout.
- Every pool was bounded to four or fewer connections. The final 15-case
run sampled three runtime clients plus one observer. The independent
final audit found zero clients and all five recorded processes absent.
Earlier closing-socket observations are kept separate from final
cleanup.
- Earlier unrelated CI failures are documented: [enrollment
timeout](https://github.com/paperclipai/paperclip/actions/runs/41944373937/job/126973483754)
and [status-card observation
bound](https://github.com/paperclipai/paperclip/actions/runs/41944373937/job/126973483843).
The enrollment test retains all 35 assertions and its original timeouts.
A controlled connection probe established the frozen-clock mechanism;
the original remote access history remains unknown. The status-card
fixture measures dispatch entry with the original strict 500ms bound. A
real delayed-dispatch control fails that bound.
- Full local workspace typecheck, build and test inventory was not run
because its embedded-cluster and wider resource paths exceed this local
lease. Exact-head remote CI now passes: 54 successful checks, three
skips and Ponytail's neutral check, with aggregate verification green
and the legacy security context independently confirmed successful. Both
complete bot reviews are 5/5, with all 13 paginated review threads
resolved. Seven execution jobs originally reported runner shutdown; one
diagnostic rerun recovered them and the dependent aggregate check.
Original logs remain retained, and the underlying shutdown cause is
unknown. This is recovery evidence, not a product-fix claim.
- Provider responses are controlled. This proves local SQL, broker, SDK
and process behavior. It does not prove live Slack, agent tools,
synchronous callbacks or deployed suspension.

## Risks

The companion broker is required. Outage or conflicting authority can
leave explicit pending or attention responsibility. A move between
stacks requires confirmation from the old authorized owner first.
Synchronous commands, actions, modal validation, options and challenges
retain their deadlines and endpoint blocker. This slice grants no full
Slack endpoint sleep exemption. No deployed suspension or savings claim
is made.

## Model Used

OpenAI `gpt-6.1-sol` workers through Codex, with reasoning, repository
tools and code execution. The served backend revision and context limit
are not exposed. A GPT-6-family coordinator performed technical review
and integration.

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have searched GitHub for duplicate or related PRs and linked
them above
- [x] I have either (a) linked existing issues with `Fixes: #` / `Closes
#` / `Refs #` OR (b) described the issue in-PR following the relevant
issue template
- [x] I have not referenced internal/instance-local Paperclip issues or
links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip`
URLs)
- [x] My branch name describes the change (e.g. `docs/...`, `fix/...`)
and contains no internal Paperclip ticket id or instance-derived details
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [x] All Paperclip CI gates are green
- [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups
- [x] I will address all Greptile and reviewer comments before
requesting merge

---------

Co-authored-by: Paperclip <noreply@paperclip.ing>
Co-authored-by: Codex <noreply@openai.com>
2026-11-06 15:22:51 -06:00
DottaandClaude Opus 5.5 876a2e4857 fix(recovery): recover a prior boot's unstarted run at lease expiry (#19578)
## Thinking Path

> - Paperclip is the open source app people use to manage AI agents for
work
> - After a server restart, a task must continue automatically and
promptly when that is safe
> - A user clicks Retry, and the server is killed before the new run
starts a process
> - Recovery leaves that run `running` until the orphan reap's
five-minute stale-age threshold passes
> - The user sees nothing happen for about five minutes
> - This pull request recovers that run when its controller lease from
the earlier boot expires
> - The benefit is that the automatic retry starts about one lease
period after the kill, not five minutes later

## Linked Issues or Issue Description

**What happened?**
A Retry admitted a legacy run. The server was killed before the run
recorded a process. The run kept a controller lease from the killed boot
and `executionStage: preparing`. After the restart, live recovery
skipped the run until `updatedAt` was five minutes old
(`server/src/services/heartbeat/recovery.ts`, `staleThresholdMs ?? 5 *
60_000`). Restart-chaos measured 5 m 01 s from run creation to
`process_lost` and the automatic retry, twice (4 m 20 s after the server
was ready).

**Expected behavior**
Recovery should claim the run as soon as the earlier boot's lease
expires. The lease is the only liveness proof for a legacy controller,
and no process was ever recorded.

**Paperclip version or commit**
`master` at `71313207eb`.

**Steps to reproduce**
Click Retry on an interrupted task, then SIGKILL the server within about
one second. Observe the retried run stay `running` for about five
minutes.

## What Changed

- `recoverActiveExecutions` skips the stale-age gate for a legacy
`running` run when all of these are true: its controller lease is
expired (checked by the existing live-lease gate), the lease belongs to
an earlier boot (`controllerBootId !== legacyControllerBootId`), the run
is still `preparing` (no adapter dispatch), and the run has no recorded
`processPid` or `processGroupId`.
- The stage and process fields committed with the revocation are checked
again. If the old controller dispatched before its lease expired, the
run keeps the age guard.
- The existing revocation (`revokeExpiredLegacyControllerWithState`)
still requires the expired boot ID, so a concurrent renewal wins. The
existing `restartInterruptedBeforeDispatch` rule still decides the
single process-loss retry.
- `doc/execution-semantics.md` describes the rule in section 10.
- Two regressions in `server/src/__tests__/live-recovery-work.test.ts`
(embedded Postgres, real residual-recovery workers).

## Verification

- Red before the fix: `recovers a fresh run from a prior boot at lease
expiry ...` failed with `expected 'running' to be 'failed'`.
- Green after the fix: `pnpm exec vitest run
src/__tests__/live-recovery-work.test.ts -t "stale-age|fresh foreign
controller|suppressed live runs"` passes 4/4. The run fails
`process_lost` with `executionRecovery.providerWorkStarted: false`
within seconds of lease expiry, and exactly one retry runs to
`succeeded`.
- Race case: a DB trigger makes the row committed with the revocation
say `dispatching` while the scan saw `preparing`. The run stays
`running`, and no retry is created.
- Guard cases: a run with an expired lease of the current boot, a run
from an earlier boot with a recorded process, and a run from an earlier
boot that was `dispatching` (for example a remote HTTP adapter) all stay
`running` after four minutes.
- Related suites: `heartbeat-process-recovery`,
`heartbeat-observed-workspace-preservation`,
`native-startup-cleanup-recovery`,
`services/heartbeat/recovery.test.ts`, full `live-recovery-work`.
- Live K8 probe (restart-chaos supervisor, local instance, ACPX Claude
agent): the first run fails with a provider error, the probe clicks
Retry, and the server is SIGKILLed 100 ms later, before the Retry run
records a process. The probe then measures how long the Retry run stays
`running`.

| Build | Retry run created to `process_lost` | Server ready to
`process_lost` | Automatic retry run |
  | --- | --- | --- | --- |
  | Base (`71313207eb`) | 300.1 s | 293.5 s | started at 5 m 00 s |
  | This PR | 60.1 s | 54.5 s | started 0.1 s after `process_lost` |

The claim now happens when the killed boot's 60-second controller lease
expires. In this probe the restart took about 6 s, so the claim came
about 54 s after ready. In the restart-chaos waves, kill to ready took
about 41 s, so the claim would come about 20 s after ready.
- A chaos wave with the `retry` trigger (`w-20261106T195715-s2727`,
branch #19513 merged locally) missed the trigger: no Retry was offered
because recovery completed the task automatically (claude t01 PASS). The
probe above makes the Retry-then-kill timing deterministic.

## Risks

- Low risk. The change only removes an age wait. Ownership is still
proved by the expired lease of another boot. A rolling deploy or hot
restart whose earlier instance is still alive keeps renewing its lease,
so the run is not touched.
- Runs with a recorded process, and dispatched runs, keep the
five-minute guard. A process on another host or a remote request is not
inferred dead.
- Native runs are not changed. Their ownership is in
`native_run_finalizations` and startup native recovery.

> For core feature work, check [`ROADMAP.md`](ROADMAP.md) first and
discuss it in `#dev` before opening the PR. Feature PRs that overlap
with planned core work may need to be redirected — check the roadmap
first. See `CONTRIBUTING.md`.

## Model Used

- Claude Opus 5.5 (`claude-opus-5-5`), Anthropic, via Claude Code with
tool use (shell, file edits, test execution). Extended reasoning
enabled.

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have searched GitHub for duplicate or related PRs and linked
them above
- [x] I have either (a) linked existing issues with `Fixes: #` / `Closes
#` / `Refs #` OR (b) described the issue in-PR following the relevant
issue template
- [x] I have not referenced internal/instance-local Paperclip issues or
links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip`
URLs)
- [x] My branch name describes the change (e.g. `docs/...`, `fix/...`)
and contains no internal Paperclip ticket id or instance-derived details
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [x] All Paperclip CI gates are green
- [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups
- [x] I will address all Greptile and reviewer comments before
requesting merge

🤖 Generated with [Claude Code](https://claude.com/claude-code)

---------

Co-authored-by: Claude Opus 5.5 <noreply@anthropic.com>
2026-11-06 15:17:58 -06:00
DottaandClaude Opus 5.5 da9a4cb96c fix(native): retire a finished local Runner that stopped before suspending (#19597)
## Thinking Path

> - Paperclip is the open source app people use to manage AI agents for
work
> - The native Runner path runs each per-turn agent turn through a
runnerd process, and the next turn must prove that the previous Runner
is finished before it takes over the saved session root
> - Under load, a local turn can have its result accepted while its
`runner.suspend` command does not finish, so the Runner's own receipt
stays unsuspended
> - The retirement proof that handles the same case for sandbox Runners
refused every local Runner with `target_not_sandbox_runner`
> - So the next turn failed with `runner_state_identity_mismatch:
prior_owner_terminal_state_indeterminate` and its session root was
quarantined
> - This pull request extends the retirement to a local Runner when the
prior Runner process is proven stopped by exact PID and start time
> - The benefit is that a follow-up turn (for example, after a user
answers a question) continues instead of failing

## Linked Issues or Issue Description

Refs #19525 (keeps the accepted result in the same incident; this is the
next run).

**What happened?**

In the runner E2E cell
`local-session-integrity.runner-acpx-claude.local.structured-question-restart-resume`,
the first turn asked a question and its result was accepted. The Runner
then logged `runner did not prove durable suspension before checkpoint`
(`runner.suspend` pending, Runner lifecycle `ready`). After a server
restart and the answer, the next run failed with
`runner_state_identity_mismatch:
prior_owner_terminal_state_indeterminate;
retirement_refused=target_not_sandbox_runner`, and its root was
quarantined.

**Expected behavior**

When the prior local Runner is provably stopped and every other
retirement proof holds, the next run retires that owner as a continuity
break and continues. If the stop cannot be proven, the run keeps the
named rejection.

**Steps to reproduce**

1. Run a local per-turn native turn whose `runner.suspend` does not
finish after its result is accepted (host load average ~40).
2. Start the next turn for the same session.
3. See `retirement_refused=target_not_sandbox_runner`.

## What Changed

- `server/src/services/native-runtime/native-restart-recovery.ts`: add
`proveNativeLocalRunnerStopped`. It uses the existing restart-recovery
checks: the recorded Runner PID is dead or now belongs to a process with
a different start time; its recorded process group is not alive; each
recorded provider process is dead or recycled. A missing PID, start time
or process group, a live recorded process, or a start time that cannot
be compared is not proof. When settlement already cleared the run's
process fields, the saved `native.local_process_stopped` receipt is the
Runner proof. Extract `nativeProviderProcessIdentities` (checkpoint plus
run events) so restart recovery and this proof read provider PIDs the
same way.
- `server/src/services/native-runtime/native-session-executor.ts`
(`retireFinishedPerTurnRunnerdOwner`, `readSettledRunnerdProjection`): a
local target is now eligible. For a local Runner, the projection accepts
the Runner's own unsuspended receipt for the same identity and
unfinished Runner lifecycle commands (`runner.suspend`, `runner.drain`,
`runner.shutdown`) only. All other proofs are unchanged: committed
result, released lease, no recovery state, stopped controller, delivered
terminal, other commands complete, tool inputs answered, quarantine
copies. The process proof runs before retirement and again just before
the archive.
- `doc/execution-semantics.md`: describe the local case.
- Tests: seven integration cases in
`native-recovered-owner-followup.test.ts` and ten unit cases in
`native-restart-recovery.test.ts`.

## Verification

- Red before the fix: the four new integration cases failed with
`retirement_refused=target_not_sandbox_runner`, which is the incident
error.
- Green after the fix: `pnpm exec vitest run
src/services/native-runtime/native-recovered-owner-followup.test.ts`
35/35. The new cases prove that a stopped Runner is retired (root
archived under `continuity-breaks`, no quarantine), and that a live
recorded Runner (`runner_process_alive`), a missing identity
(`runner_process_identity_missing`), and a pending non-lifecycle command
(`journal_commands_unsettled(turn.start.pending)`) keep the rejection.
All existing sandbox cases still pass, including "keeps an unsuspended
Runner receipt decisive" for sandbox targets.
- `native-restart-recovery.test.ts` unit cases: recycled PID, live
process, unknown start time, live group, live provider, missing PID or
start time.
- `native-session-executor.test.ts` + `native-restart-recovery.test.ts`:
1190 pass. `native-runner-restart-recovery.integration.test.ts` +
`native-restart-recovery-isolation.test.ts` (shared provider-PID
extraction): 81 pass. `tsc --noEmit -p server/tsconfig.json`: pass.
- Live: `pnpm test:e2e:runner -- --max-parallel 1
--max-automatic-retries 0 --id
local-session-integrity.runner-acpx-claude.local.structured-question-restart-resume`,
3 runs at eec57dd5ed: 3/3 PASS. The host load average was ~15 (the
incident had ~40), and `runner.suspend` finished in all three runs, so
these runs show no regression but did not exercise the new retirement
path. The integration cases cover that path.

## Risks

- The new path lets a follow-up archive a local root whose Runner
receipt is unsuspended. This is safe only if the Runner is stopped, so
the proof uses exact PID and start-time identity and fails closed on any
uncertainty. `ps` start times have one-second precision; a sub-second
difference is treated as the same process (not proof).
- A zombie-only process group on macOS can report as alive. That keeps
the rejection, as before.
- No quarantine behavior changes. A refused retirement still quarantines
the root as before.

## Model Used

- Claude Opus 5.5 (`claude-opus-5-5`), Anthropic, through Claude Code
with tool use (shell, file edits, GitHub CLI). Extended reasoning on.

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have searched GitHub for duplicate or related PRs and linked
them above
- [x] I have either (a) linked existing issues with `Fixes: #` / `Closes
#` / `Refs #` OR (b) described the issue in-PR following the relevant
issue template
- [x] I have not referenced internal/instance-local Paperclip issues or
links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip`
URLs)
- [x] My branch name describes the change (e.g. `docs/...`, `fix/...`)
and contains no internal Paperclip ticket id or instance-derived details
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [x] All Paperclip CI gates are green
- [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups
- [x] I will address all Greptile and reviewer comments before
requesting merge

🤖 Generated with [Claude Code](https://claude.com/claude-code)

---------

Co-authored-by: Claude Opus 5.5 <noreply@anthropic.com>
2026-11-06 15:11:00 -06:00
DottaandClaude Opus 5.5 586caa5f49 fix(native): hand a shutdown-interrupted startup to the next controller (#19596)
## Thinking Path

> - Paperclip is the open source app people use to manage AI agents for
work
> - The native Runner path runs an agent turn through a runnerd process
that the control plane owns
> - A restart of the control plane must keep the task going without a
click, if that is safe
> - A graceful shutdown closes the HTTP listener first and then drains
the heartbeat runs
> - A native run that was between provider dispatch and runnerd backend
setup in that gap failed with `local_runtime_api_listener_unavailable`,
so the drain did not see it as running and did not suspend it for the
next boot
> - This pull request makes that failure a restart detach: the run stays
running with its claim, the drain suspends it, and the next controller
adopts it
> - The benefit is that a SIGTERM in this window no longer spends a
failure and a same-run retry, and the task continues by itself

## Linked Issues or Issue Description

Refs #19530 (the same restart window, before provider dispatch).

**What happened?**

In a restart chaos replay (ACPX Claude, local runner), a
restart-recovered run got SIGTERM while
`createRunnerdBackendWithinSessionClaim` built the runnerd backend.
`resolveLocalRuntimeApiUrl()` threw
`local_runtime_api_listener_unavailable` because shutdown had already
closed the listener. The run settled `failed`. The drain then logged
`restartSuspendedRunIds: []`. The next boot used the one bootstrap
retry. A second SIGTERM hit the same window, and the task stopped at a
manual Retry.

**Expected behavior**

A run that this process cannot continue because it is shutting down is
handed to the next controller. It is not settled as failed.

**Steps to reproduce**

1. Start a native Runner task and restart the server (K1) so that
startup recovery resumes the run.
2. Send SIGTERM while the resumed run sets up its runnerd backend.
3. See the run fail with `local_runtime_api_listener_unavailable` and
the drain report no suspended runs.

## What Changed

- `server/src/runtime-api.ts`: `resolveLocalRuntimeApiUrl()` throws the
new `LocalRuntimeApiListenerClosedError` when this process had a
listener and closed it (the `listening` flag is false or the `close`
event fired). The error message stays
`local_runtime_api_listener_unavailable`, so the existing classifiers do
not change. A listener that never started still throws the plain error.
- `server/src/services/native-runtime/native-session-executor.ts`: for a
local Runner, the startup failure handler treats
`LocalRuntimeApiListenerClosedError` like a restart detach. It stops
lease renewal, keeps the claim and throws
`NativeControllerDetachedForRestartError`. Heartbeat already keeps such
a run `running`. A remote Runner keeps the same-run bootstrap retry from
#19462, because startup recovery has no process evidence to adopt a
claimed remote startup
(`native-runner-restart-preparation.integration.test.ts` still covers
that path).
- `doc/execution-semantics.md`: describe the new rule.
- Tests: a heartbeat regression that closes the real runtime API
listener before backend setup, then drains and restarts; a unit test for
the closed versus never-started listener; two `vi.mock` factories keep
the real module exports.

## Verification

- Red before the fix: `pnpm exec vitest run
src/__tests__/heartbeat-native-restart-suspension.test.ts -t listener`
failed with `restartSuspendedRunIds: []` and the run `failed`
(`local_runtime_api_listener_unavailable`, `bootstrap_retry`).
- Green after the fix: the same test passes. The drain suspends the run,
the run stays `running` with `awaiting_runner_reattach`, and the next
controller claims it and reaches the backend once.
- `pnpm exec vitest run
src/__tests__/heartbeat-native-restart-suspension.test.ts
src/http/server.test.ts
src/__tests__/server-startup-feedback-export.test.ts
src/services/native-runtime/native-session-executor.test.ts
src/services/native-runtime/native-recovered-owner-followup.test.ts`:
1333 tests pass. One timing test in `native-session-executor.test.ts`
failed once under host load average ~30 and passed alone.
- `pnpm exec tsc --noEmit -p server/tsconfig.json`: pass.
- Live, restart chaos harness, local ACPX Claude (`claude-sonnet-5`),
`--rc06-masked`, this branch at a35ec8b845 (before the remote-scope
commit 5dc63f24fb, which does not change the local path). The original
replay schedule no longer reached the window, because the task now ends
before the second fault. So I moved the faults earlier: K1 at 10 s, then
K2 as soon as the recovered server is ready.
- K1 + K2, 2 runs: both runs PASS with **R1 pass**. Each drain logged
`restartSuspendedRunIds: [<run>]` (before: `[]`). The next boot
classified the run `resume_dead_runner` and the same run completed. No
`local_runtime_api_listener_unavailable` failure.
- K1 + K2 + K2, 2 runs: each drain suspended the run. The fourth boot
blocked the run with `native_restart_recovery_blocked`, because three
restart claims used the three-attempt recovery budget. Retry then
completed the task (R3 pass). That budget count is a separate open item.
This pull request does not change it.

## Risks

- Low. The new path applies only after this process closed its own
listener, which happens only during shutdown. The run then waits for the
drain or the next boot, as for the other restart detaches.
- If shutdown does not reach the drain (for example SIGKILL after the
listener closes), the run keeps its live claim until the claim expires.
Then startup recovery handles it as a hard restart. This is the same as
any run that is running at a hard kill.

## Model Used

- Claude Opus 5.5 (`claude-opus-5-5`), Anthropic, through Claude Code
with tool use (shell, file edits, GitHub CLI). Extended reasoning on.

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have searched GitHub for duplicate or related PRs and linked
them above
- [x] I have either (a) linked existing issues with `Fixes: #` / `Closes
#` / `Refs #` OR (b) described the issue in-PR following the relevant
issue template
- [x] I have not referenced internal/instance-local Paperclip issues or
links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip`
URLs)
- [x] My branch name describes the change (e.g. `docs/...`, `fix/...`)
and contains no internal Paperclip ticket id or instance-derived details
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [x] All Paperclip CI gates are green
- [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups
- [x] I will address all Greptile and reviewer comments before
requesting merge

🤖 Generated with [Claude Code](https://claude.com/claude-code)

---------

Co-authored-by: Claude Opus 5.5 <noreply@anthropic.com>
2026-11-06 15:10:44 -06:00
DottaandClaude Opus 5.5 d728be8fbf fix(native): re-bootstrap a Daytona runner restarted before session.open (#19583)
## Thinking Path

> - Paperclip is the open source app people use to manage AI agents for
work
> - Native runs on Daytona start a `paperclip-runnerd` process in a
sandbox. The local control plane keeps the runner's controller state in
an encrypted Postgres checkpoint.
> - When the control plane restarts, restart recovery classifies each
live native run and decides to reattach, resume, bootstrap again, or
hold the task.
> - A restart chaos wave killed the control plane twice while a Daytona
runner was connecting. The run was claimed and the sandbox runner was
launched, but `session.open` never completed. No provider evidence
existed.
> - Recovery waited correctly for the old 60 s controller lease to
expire. Then the classifier had no rule for a claimed remote bootstrap.
It returned `ambiguous_remote_recovery_evidence` and blocked the task as
"Workspace repair required".
> - The controller writes each command to the Postgres checkpoint before
it sends it. After the lease expires, that checkpoint is the complete
record of what reached the sandbox runner.
> - This pull request lets recovery prove from that checkpoint that no
provider work exists, and then start the same-run bootstrap again.
> - The benefit is that a restart during Daytona runner startup
continues automatically instead of stopping the task.

## Linked Issues or Issue Description

**What happened?**

A restart during Daytona remote runner startup (native ACPX Claude, two
SIGKILLs about 20 s apart) left the task blocked. The run history showed
`remote_controller_lease_live` twice, then
`ambiguous_remote_recovery_evidence` with disposition `blocked`. The
task showed "Workspace repair required"
(`native_restart_recovery_blocked`) and did not continue.

**Expected behavior**

When the durable controller record proves that the runner received only
bootstrap commands, recovery continues the run with a fresh bootstrap.
Any evidence of provider work keeps the hold.

**Steps to reproduce**

1. Start a native run on a Daytona environment.
2. Kill the control plane after the sandbox runner connects and before
`session.open` completes.
3. Restart the control plane and wait for the old controller lease to
expire.
4. See that restart recovery blocks the task with
`ambiguous_remote_recovery_evidence`.

Root cause:
`server/src/services/native-runtime/native-restart-recovery.ts`
`classifyNativeRunnerRecoveryEvidence`, remote branch. It admitted only
an unclaimed bootstrap (`remote_execution_never_claimed`, #16349) or a
run with a provider checkpoint. A claimed bootstrap with no provider
evidence fell through to `ambiguous_remote_recovery_evidence`.

The decrypted checkpoint of the failed run held `connectionCount: 1`,
`run.prepare` delivered once and pending, `session.open` pending and
never delivered, no committed events, and `ackedSourceSeq: 0`.

Refs #16349, #19524

## What Changed

- `native-bootstrap-proof.ts`: move the incomplete-bootstrap predicates
from the executor into a small pure module. Restart recovery and the
executor now use the same proof. No behavior change.
- `native-runner-checkpoint.ts`: add
`nativeRunnerCheckpointProvesIncompleteBootstrap`. It reads only a
checkpoint with the bootstrap parts (header, cursor, `command:1`,
`command:2`), checks the run, runner instance, and session identity, and
applies the shared proof. A remote runner journal is not on this host,
so the proof uses the controller record alone.
- `native-restart-recovery.ts`: for a classic sandbox run whose owner
lease has expired, with a durable checkpoint, no session checkpoint, no
provider evidence, and no staged attachment, claim
`bootstrap_incomplete` with the reason
`remote_bootstrap_proven_incomplete` when the checkpoint proof holds. At
three provider attempts, block with
`execution_recovery_budget_exhausted`.
- `native-session-executor.ts`: add
`restoreRemoteBootstrapCheckpointForRecovery`. For a
`bootstrap_incomplete` recovery on a sandbox target, it restores the
Postgres checkpoint over the local external-state marker. The existing
incomplete-bootstrap proof then checks the restored state before it
quarantines the root and bootstraps again.
- `doc/run-log-events.md`: document the new disposition reason.

## Verification

- Red, then green: `cd server && npx vitest run
src/services/native-runtime/native-runner-restart-recovery.integration.test.ts
-t "remote bootstrap"`. Before the fix, the proven case and the budget
case returned `blocked` / `ambiguous_remote_recovery_evidence`.
- New cases: the proven claimed bootstrap gets `bootstrap_incomplete`
(attempt kept, generation +1, run still `running`, no recovery action).
The hold stays for a queued `turn.start`, an acknowledged event, adopted
state, no checkpoint, and a spent budget. The executor helper restores
the checkpoint only for a bootstrap recovery on a classic sandbox and
only over a marker for the same run.
- Regression set: `native-runner-restart-recovery.integration`,
`native-session-executor`, `native-restart-recovery`,
`native-bootstrap-retry.integration`, `heartbeat/recovery`: 1383 passed,
14 skipped.
- Live Daytona replay of the failing chaos task (double SIGKILL during
remote runner startup), 3 runs: REPLAY_RESULTS

## Risks

- A fresh bootstrap acquires a new sandbox. The old sandbox keeps its
lease until run settlement releases all run leases. The old runner gets
no turn command, because only the controller issues one and the new
controller never connects to it.
- If `session.open` reached the old runner, the old provider session can
exist without a turn. No provider work or tool call can happen in it.
- Any checkpoint shape other than the bootstrap-only shape keeps the
previous fail-closed hold.

## Model Used

- Claude Opus 5.5 (`claude-opus-5-5`), Anthropic, via Claude Code with
tool use (shell, file edits, GitHub CLI) and extended reasoning.

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have searched GitHub for duplicate or related PRs and linked
them above
- [x] I have either (a) linked existing issues with `Fixes: #` / `Closes
#` / `Refs #` OR (b) described the issue in-PR following the relevant
issue template
- [x] I have not referenced internal/instance-local Paperclip issues or
links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip`
URLs)
- [x] My branch name describes the change (e.g. `docs/...`, `fix/...`)
and contains no internal Paperclip ticket id or instance-derived details
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [ ] All Paperclip CI gates are green
- [ ] Greptile is 5/5 with no open P2s, recommendations, or follow-ups
- [x] I will address all Greptile and reviewer comments before
requesting merge

🤖 Generated with [Claude Code](https://claude.com/claude-code)

---------

Co-authored-by: Claude Opus 5.5 <noreply@anthropic.com>
2026-11-06 14:43:22 -06:00
DottaandClaude Opus 5.5 dc1adb7209 fix(tasks): advertise a native resume only while the scheduler would claim it (#19523)
## Thinking Path

> - Paperclip is the open source app people use to manage AI agents for
work
> - When a native run cannot reattach to its provider after a
control-plane restart, the native coordinator resumes the same run by
itself after about 30 seconds, up to three attempts
> - The run projection shows this correctly as "Retry scheduled" with
only `inspect_run` permitted
> - The task interruption shown on the issue read only system-recovery
evidence and `scheduledRetryAt`. It never read the coordinator's
`nextAttemptAt`, so it showed `state: failed, canRetry: true` and
offered a manual Retry while the automatic resume was still pending
> - The two surfaces disagree, and a user click can race the automatic
resume. That is one way a Retry gets parked behind "execution checks"
> - #19503 made the task interruption read the coordinator's pending
resume time. Review found that the coordinator also pushes that time
forward while it defers an ineligible candidate, so a reassigned or
blocked task could hide Retry for good
> - This pull request advertises the resume only while the scheduler's
synchronous admission checks pass
> - The benefit is one consistent story: while the automatic resume is
pending, the task shows it with its time and no competing Retry. If
recovery ends, exactly one Retry returns

## Linked Issues or Issue Description

Follow-up to #19503. Refs #19487, #19497.

**What happened?**
A native run failed with `native_session_interrupted` after a restart.
Its finalization row had `phase: retryable_failure` and `nextAttemptAt`
30 seconds later. The run projection said "Retry scheduled". The issue
interruption said `state: failed, canRetry: true, nextRetryAt: null`.

**What did you expect?**
While the automatic resume is pending, the task shows that it is
resuming, with the time, and no Retry. When the resume fails for good or
never runs, exactly one Retry that works on the first click.

**Steps to reproduce**
1. Run a native task and restart the control plane so the native attach
fails.
2. Read `GET /api/issues/:id` while the coordinator's resume is pending.
3. Observe `interruption.canRetry: true` while `execution.phase` is
`retry_scheduled`.

## What Changed

- `task-interruption-presentation.ts`: the pending-resume read now also
requires the task to be in a resumable status, assigned to the run's
agent, not owned by another execution or checkout run, the run's
question not cancelled, and the agent invokable (not paused, terminated
or pending approval). These mirror `readNativeSessionResumptionAgent`.
- `native-session-resumption-statuses.ts`: one shared status set used by
both the scheduler admission and the read model.
- No time cap: provider cooldowns and remote backoff schedules stay
visible as a pending resume.

## Verification

- `task-interruption-query.test.ts` (embedded Postgres): a reassigned
task and a blocked task show one Retry; a paused agent asks to be
resumed; in each case `readNativeSessionResumptionAgent` also refuses
the candidate, so the read model and the scheduler agree. A resume an
hour out (provider cooldown) stays `retry_scheduled` with no Retry. Red
on master for the reassigned case.
- All 57 presentation and query tests pass. Server typecheck passes.

## Risks

- Low risk. Read model only.
- A review-assignment resume (reviewer is not the assignee) shows Retry
instead of the pending resume. That is the safe fallback.
- Deferrals for a pause hold, dependency readiness or a competing run
are not mirrored. Those gates also hold a manual Retry, so no competing
action appears.
- The `POST /issues/:id/retry` endpoint is unchanged.

## Model Used

- Claude Opus 5.5 (`claude-opus-5-5`), Anthropic, via Claude Code with
tool use (shell, file editing, embedded Postgres tests).

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have searched GitHub for duplicate or related PRs and linked
them above
- [x] I have either (a) linked existing issues with `Fixes: #` / `Closes
#` / `Refs #` OR (b) described the issue in-PR following the relevant
issue template
- [x] I have not referenced internal/instance-local Paperclip issues or
links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip`
URLs)
- [x] My branch name describes the change (e.g. `docs/...`, `fix/...`)
and contains no internal Paperclip ticket id or instance-derived details
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [ ] All Paperclip CI gates are green
- [ ] Greptile is 5/5 with no open P2s, recommendations, or follow-ups
- [x] I will address all Greptile and reviewer comments before
requesting merge

🤖 Generated with [Claude Code](https://claude.com/claude-code)

---------

Co-authored-by: Claude Opus 5.5 <noreply@anthropic.com>
2026-11-06 14:38:29 -06:00
DottaandClaude Opus 5.5 8c7e86e73b fix(workspaces): let non-git workspace directories pass close readiness (#19553)
## Thinking Path

> - Paperclip is the open source app people use to manage AI agents for
work
> - Execution workspaces hold the files that agents work in, and a
person can close a workspace when the work ends
> - Before close, Paperclip checks "close readiness" so that it does not
destroy unsaved git work
> - The check assumed that every existing workspace path is a git
repository
> - A shared or `local_fs` workspace can be a plain directory. For that
directory, `git rev-parse` fails, and the check reported "Paperclip
could not verify the workspace git status" as a blocking reason
> - So a person could never close these workspaces
> - This pull request treats a path with no `.git` marker as a workspace
with no git state
> - The benefit is that plain-directory workspaces can close, and real
git errors still block close

## Linked Issues or Issue Description

**What happened?**
`GET /api/execution-workspaces/:id/close-readiness` returned `state:
"blocked"` for a `shared_workspace` with provider `local_fs`. The
workspace directory existed but was not a git repository. The only
blocking reason was "Paperclip could not verify the workspace git
status. Retry before destructive cleanup."

**Steps to reproduce**
1. Create a project workspace and an execution workspace
(`shared_workspace`, `local_fs`) whose `cwd` is a plain directory that
exists.
2. Request close readiness for the execution workspace.
3. See `state: "blocked"` and `isDestructiveCloseAllowed: false`.

**Expected behavior**
The workspace is ready to close. It has no git state to lose.

## What Changed

- `inspectGitCloseReadiness` in
`server/src/services/execution-workspaces.ts`: when `git rev-parse
--show-toplevel` fails, the provider is not `git_worktree`, and no
`.git` entry exists on the path or on an ancestor, return `git: null`
with `statusInspectionSucceeded: true`.
- Added `hasGitMarkerInPathOrAncestors`. The check uses the filesystem,
not git error text, so it does not depend on the git locale. It uses
`lstat`, so a dangling `.git` symlink still counts as a marker. Any
error other than `ENOENT` counts as a possible marker, so the check
fails closed.
- For a plain directory, the result is a git readiness object with
`repoRoot: null`, the same shape as the missing-path case.
`createdByRuntime` stays on it, so close readiness still plans
`remove_local_directory` for a runtime-created directory.
- Added two regression tests in
`server/src/__tests__/execution-workspaces-service.test.ts`:
- A plain directory is `ready_with_warnings` with `git: null` and no
blocking reasons. This test failed before the fix (`state: "blocked"`).
- A directory with a broken `.git` pointer is still `blocked` with the
git-status reason.
- A directory with a dangling `.git` symlink is still `blocked`. This
test failed before the second commit.
- A runtime-created plain directory plans `remove_local_directory`. This
test failed before the second commit.
- A plain directory nested under an ancestor with an unreadable `.git`
marker is still `blocked`. This test covers the ancestor walk.

## Verification

- Red/green: the new non-git test failed on `master` (`state:
"blocked"`) and passes with the fix. The broken-git test passes on both.
- `cd server && npx vitest run
src/__tests__/execution-workspaces-service.test.ts
src/__tests__/execution-workspaces-routes.test.ts`: 2 files, 101 tests
pass. The five close-readiness tests also pass after the third commit.
- `pnpm verify` selected 2,223 of 2,991 test files because this service
has many importers. I did not run that near-full suite locally. Required
CI supplies that coverage.
- `tsc -p server/tsconfig.json` shows no errors in the changed files.

## Risks

- Low risk. The change only affects paths where git inspection already
failed.
- With `git: null` removed, the result uses the same `repoRoot: null`
shape as a missing path. Existing code already handles that shape.
- `git_worktree` workspaces still fail closed. A real repository that
git cannot read (corrupt, missing git dir, ownership refusal) still has
a `.git` marker, so it still blocks.
- The terminal-workspace sweep also uses this inspection. With no repo
root there is no HEAD SHA, so delivery cannot be "merged", and the sweep
still skips these workspaces. Only an explicit close by a person
proceeds.
- A `.git` on an ancestor across a filesystem boundary makes git report
"not a repository" while the marker check finds it. That case stays
blocked, which is the safe result.

## Model Used

- Anthropic Claude Opus 5.5 (`claude-opus-5-5`) in Claude Code, with
tool use (shell, file edit, test runs).

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have searched GitHub for duplicate or related PRs and linked
them above
- [x] I have either (a) linked existing issues with `Fixes: #` / `Closes
#` / `Refs #` OR (b) described the issue in-PR following the relevant
issue template
- [x] I have not referenced internal/instance-local Paperclip issues or
links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip`
URLs)
- [x] My branch name describes the change (e.g. `docs/...`, `fix/...`)
and contains no internal Paperclip ticket id or instance-derived details
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [ ] All Paperclip CI gates are green
- [ ] Greptile is 5/5 with no open P2s, recommendations, or follow-ups
- [x] I will address all Greptile and reviewer comments before
requesting merge

🤖 Generated with [Claude Code](https://claude.com/claude-code)

---------

Co-authored-by: Claude Opus 5.5 <noreply@anthropic.com>
2026-11-06 14:33:09 -06:00
DottaandClaude Opus 5.5 4938a930d6 fix(budgets): stop pending or restart-lost accounting from hard-stopping companies (#19497)
## Thinking Path

> - Paperclip is the open source app people use to manage AI agents for
work
> - Budget admission and run accounting decide whether any task in a
company may start
> - A control-plane restart that kills a provider turn mid-flight can
lose that turn's final usage receipt. ACPX Claude reports usage only at
turn end, so the receipt never becomes complete
> - Accounting kept such a run "awaiting receipt" forever. Every later
admission in the company then refused with "completed runs await
accounting", and the budget evaluator opened a hard-stop incident that
paused the company. No product action could clear it: raising the budget
refuses while runs await accounting, accounting retry finds no new data,
and allowing unpriced usage does not apply to pending runs
> - Restart chaos waves showed this as a dead task Retry, a new task
blocked as "over budget" at 22 of 500 cents, and a hard stop that
cancelled queued Retries and an unrelated running task
> - This pull request closes the debt from evidence: once native
recovery reaches terminal failure and the provider stop is verified, the
known part settles as an unpriced charge. Until then the run holds new
work as recovering accounting, without a hard stop
> - The benefit is that a restart no longer bricks a company with a hard
budget. The operator's unpriced-usage policy decides admission, and
unknown spend still never shows as zero cost

## Linked Issues or Issue Description

Refs #19399, #19426, #19431 (earlier restart Retry fixes; this is the
budget layer under the same journey).

**What happened?**
After a control-plane SIGKILL during an ACPX Claude turn, the killed run
ended `native_provider_terminal_failed` with
`usage_json.accountingReceiptReady = false` and `cost_accounting_pending
= true`. It stayed that way for good. The task Retry was accepted but
parked with `budget.blocked` ("Company cannot start work while completed
runs await accounting"), which the UI showed as "Retry is waiting for
execution checks". A new Codex task was escalated to `blocked` with "the
original recovery target is over budget" while the company had spent 22
of 500 cents. After the next restart the budget evaluator opened a
hard-stop incident (`amount_observed` 22.08 < 500), paused the company
and cancelled both queued Retries.

**What did you expect?**
A restart should not stop the company. Unknown usage from a stopped
provider should become an honest, operator-governed state, and Retry
should start a run.

**Steps to reproduce**
1. Give a company a hard-stop budget.
2. Start an ACPX Claude task and SIGKILL the control plane mid-turn, so
the resumed turn fails.
3. Observe the run stay `cost_accounting_pending` with an incomplete
receipt, and every new admission refuse.

## What Changed

- `budgets.ts`: completed runs that await accounting now hold new work
only. They no longer open a hard-stop incident, pause the company, place
an agent budget hold, or deliver Stop to running work. Only spend at the
limit, or unpriced usage under a blocking policy, does that. Chaos wave
A and a pre-restart lifecycle cell showed the wedge: a run that had just
succeeded stayed terminal for about 100 ms before its charge committed,
the evaluator paused the company in that gap, and the Stop it delivered
left a cancelled run whose receipt never closed.
- `run-cost-accounting.ts`: a failed native run is a closed receipt
source only with positive stop evidence: its finalization is
`terminal_failure` with no result (not a finalization-deadline failure),
it no longer records a process identity, and its latest server-authored
process event is `native.local_process_stopped`. One SQL predicate
serves the reconciler scan and settlement. Accounting now settles its
known part as an `unpriced` charge instead of waiting forever. The
background reconciler selects these runs. The reservation settles. Other
incomplete receipts stay pending as before. A cancelled run keeps its
existing accounting drain, so Stop recovery can still deliver its final
receipt.
- `native-local-process-stop.ts` and its transactional callers:
releasing a verified local or remote process stop wakes the accounting
worker, so the closed debt settles promptly.
- `usage-receipts.ts`: a charge settled without its receipt is marked
`accountingReceiptUnavailable`. A later complete receipt that carries
its own price (including a rate-card price) corrects it. A receipt with
no own price and unchanged usage does not reopen the hold.
- `budget-exposure.ts`: the blocking unpriced-usage policy no longer
counts a charge settled from a lost receipt with no observed usage. That
is unknown, not "usage with no reliable price". Complete receipts that
report no tokens (for example Cursor Cloud) still count. A live wave
under the default policy hard-stopped its company at 0 of 500 cents on
one such charge.
- `budget-exposure.ts`: a terminal-failure native run with an
incomplete, not capture-failed receipt counts as recovering accounting.
Admission holds new work ("New work must wait while a native run
recovers its unfinished accounting") without a hard-stop incident, a
company pause or cancellation of running work.
- `recovery/service.ts`: the stranded-work comment names the actual
budget gate instead of always saying "over budget".
- `task-interruption-presentation.ts`: a Retry parked by
`budget.blocked` says it waits for the budget, not for "execution
checks".
- `doc/SPEC-implementation.md`: documents the closed-receipt contract
next to the existing incomplete-receipt rule.

## Verification

- New embedded-Postgres suite
`server/src/__tests__/closed-native-receipt-accounting.test.ts`, built
from the persisted shape of the killed run:
- Red before the fix: the run stayed pending, `reconcileRunCosts`
accounted 0, and admission refused with "completed runs await
accounting".
- Debt stays pending with no verified stop event, with a
finalization-deadline failure, with a recorded process identity, and
while the coordinator can still produce a result.
- Under a blocking policy, a lost receipt with no usage does not
hard-stop; one with tokens still blocks. A run with a still-recorded
process identity paused the company with a hard-stop incident.
- Green after: the stopped run settles as one `unpriced` charge with the
reservation settled; admission is clear under an `allow` policy and
names "no reliable price" under `block`; a run with a recorded process
identity or a non-terminal coordinator stays pending; the closing window
holds admission without an incident or pause; a final receipt that
arrives later still enters late-receipt reconciliation.
- Pending accounting from a run that just finished holds admission with
no incident, no pause, no enforcement version bump, and an unrelated
running run stays running. Red before the `budgets.ts` change: the
company was paused.
- A later priced receipt corrects the unavailable charge to its price;
an unpriced one leaves it settled.
- `task-interruption-presentation.test.ts`: the `budget.blocked` Retry
wait message.
- `budget-enforcement-scoping.test.ts`: the accounting-hold release
cases now assert that pending accounting places no budget hold and that
admission clears after settlement.
- Existing suites pass locally: all budget suites (control publication,
enforcement scoping, enforcement worker, evaluation work, live attempts,
history, service, live usage, budget cancellation),
native-stop-accounting, explicit-native-continuation,
native-case-handoff, cost-data-quality, heartbeat-cost-accounting,
run-cost-accounting, native-usage-delivery. Server typecheck passes.
- Runner e2e cell
`lifecycle-baseline.runner-codex.local.lifecycle-dependency-restart-neutral`,
which failed on master with a false agent budget hold before any
restart, passes on this branch.
- Live restart-chaos wave (local runner, K1 SIGKILL, codex + 2× ACPX
Claude + OpenCode, 4 restarts, company policy `unpricedUsagePolicy:
allow`) with the accounting fix: every killed run settled (no
`cost_accounting_pending` left), the company stayed active, the OpenCode
Retry completed the task on the first click and the Codex Retry finished
its task. That wave also exposed a 1-second false hard stop in the
closing window (observed 0 of 500 cents) that cancelled the running
OpenCode turn; the `budget-exposure.ts` change fixes it and has its own
red/green test.
- Confirming live wave with both commits, same plan (2× ACPX Claude,
OpenCode, Codex; 4 K1 restarts): both Claude tasks passed R3 (one Retry
click started a run that completed the task), OpenCode passed R1
(continued by itself), and the Codex Retry completed its task. Zero
budget incidents, zero cancelled runs, zero runs left pending
accounting, company active; three killed runs recorded as `unpriced`
charges. The only open signature is an unrelated workspace-durability
check (`R2:pre_fault_files_lost` on the Codex long-bench task).

## Risks

- Behavior change: a stopped native run's lost receipt now becomes an
`unpriced` ledger charge with its known usage. If that usage has tokens,
the default `block` policy still stops new work with "recorded usage has
no reliable price". If it has none, the charge is visible in Costs but
does not stop the company. Other unpriced charges keep their existing
effect. Unknown spend is never recorded as a priced receipt. Budget
enforcement stays best effort, as the spec says; killed OpenCode and
Codex requests already lose their in-flight usage.
- Remote runs and runs without a verified local stop keep their debt
pending (an admission hold only, no hard stop).
- Contract change: pending accounting no longer pauses a scope or stops
running work. New work still waits with "completed runs await
accounting". A scope's real hard stop (spend at the limit, or blocked
unpriced usage) is unchanged.
- If a provider stop can never be verified, the run stays "recovering
accounting": new work waits without a hard-stop incident. Before, the
same state paused the company. The hold is visible in admission errors
and Costs.
- A receipt that arrives after settlement posts a late correction. The
original unpriced charge stays in the ledger.
- No schema or migration change.

## Model Used

- Claude Opus 5.5 (`claude-opus-5-5`), Anthropic, via Claude Code with
tool use (shell, file editing, embedded Postgres tests, live
restart-chaos harness).

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have searched GitHub for duplicate or related PRs and linked
them above
- [x] I have either (a) linked existing issues with `Fixes: #` / `Closes
#` / `Refs #` OR (b) described the issue in-PR following the relevant
issue template
- [x] I have not referenced internal/instance-local Paperclip issues or
links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip`
URLs)
- [x] My branch name describes the change (e.g. `docs/...`, `fix/...`)
and contains no internal Paperclip ticket id or instance-derived details
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [ ] All Paperclip CI gates are green
- [ ] Greptile is 5/5 with no open P2s, recommendations, or follow-ups
- [x] I will address all Greptile and reviewer comments before
requesting merge

🤖 Generated with [Claude Code](https://claude.com/claude-code)

---------

Co-authored-by: Claude Opus 5.5 <noreply@anthropic.com>
2026-11-06 14:27:51 -06:00