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| Author | SHA1 | Message | Date | |
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 DottaandPaperclip
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124b2cd0ad |
fix(server): certify background deadlines for idle tenants (#19001)
## Thinking Path > - Paperclip is the open source app people use to manage AI agents for work. > - Background services own future checks, retries, and recovery work. > - An idle tenant can stop only when a durable wake covers its remaining duties. > - The current alarm catalog covers several domains but leaves these owners blocked. > - A saved future timestamp alone cannot prove that reconstruction or admitted work has settled. > - This pull request binds durable domain snapshots to the actual registered worker revisions. > - The tenant can hand off supported future duties and retain all checks for uncertain or active work. ## Linked Issues or Issue Description No matching public issue was found. Related work: [domain deadline handoff #18656](https://github.com/paperclipai/paperclip/pull/18656), [owned blocker diagnostics #18632](https://github.com/paperclipai/paperclip/pull/18632), and [completed history proof #18646](https://github.com/paperclipai/paperclip/pull/18646). The separate [native idle-session change #18988](https://github.com/paperclipai/paperclip/pull/18988) covers runtime retirement. [Far-future retry re-probes #13534](https://github.com/paperclipai/paperclip/pull/13534) changes recovery responsiveness after an upstream success; this change preserves existing retry decisions. **What happened?** Future status-card, external-object, skill-sync, watchdog, retry, and quota duties lacked complete owner-bound coverage in the idle deadline proof. A completed quota task could also retain its monitor policy and timestamp and remain blocked after the scheduler had disarmed it. **Expected behavior** A settled registered owner can hand off its exact supported future deadline. Active work, dirty reconstruction, transaction uncertainty, changed revisions, claims, unknown state, and unsupported duties keep the tenant awake. Completed history retains its data and stops recurring work when the owner has no remaining duty. **Steps to reproduce** 1. Produce a supported future duty through its normal service. 2. Let the registered worker finish reconstruction and admitted work. 3. Request an owned idle report with the negotiated domain deadline catalog. 4. Check the saved earliest deadline and generation before durable alarm registration. 5. Stop and reconstruct the worker. Check that ordinary admission and claims resume useful work once due. 6. Complete a quota task. Keep its saved policy and timestamp. Check that linked unfinished work still blocks sleep and that settled history does not. **Paperclip version or commit** The owned patch was qualified at `699c8569fa34338dd75cdc5731381ec1e2efdb45`. Publication head `491fac368ee72eaac8ae105d53e6bf6b305d8a6a` normally merges actual master `039e0dad2c51c80251e1302a19c5566e039c357a`. All 43 owned files are byte-identical. All 29 new upstream paths are preserved. The later normal current-master integration is `8c912e1ba4fc66397a7341ade59373af8075068f`, described separately below. **Deployment mode** Source checkout with real PostgreSQL 17 and a controlled local Node process. No deployed alarm, tenant suspension, database suspension, or fleet result is claimed. ## What Changed - Add registered-worker reconciliation revisions and invalidate them on stop. - Keep status-card, external-object, and skill deadline interpretation with their owners. - Reuse the watchdog classifier against the supplied database snapshot. - Validate the exact saved retry run and paired queued wake. - Validate legacy quota source bindings and the current assignee or reviewer policy. - Preserve common issue scope, dependency, sibling, and state checks for covered waits. - Compose normalized owner snapshots within the existing bounded deadline proof and recheck revisions after inspection. - Bind actual service and worker instances from server startup. Missing bindings preserve existing blockers. - Retain completed quota policy and timestamps while independently rejecting linked unfinished runs or wakes. - Block unconsumed budget evaluation inputs through the owning queue predicate. Accounting policy and settlement stay unchanged. - Bind completed quota history through fixed-size UUID-array parameters, preserve exact company/task/source associations, and guard external references before the run-ID join. - Batch watchdog subtrees and shared classifier facts without changing the 64-query or two-second proof budget; preserve exact company pairing for first-run evidence. - Extend production-path regression controls and document supported coverage and limits. ## Verification Current integration head: `688abc6cac6016b9fb50e5832f81e2975ed5d49f`. Fresh exact-head checks completed with **58 successes, three intentional skips and one neutral review**, including aggregate `ci / verify`. The complete current Greptile review is **5/5**. The complete current Ponytail verdict is **Ship (4/5)**, with only optional cleanup of an unused MCP proof input; both prior correctness findings are resolved. All review threads and nested pages were inspected. The normal master merges preserve the registered retry deadline owner and current startup completion log after the same readiness await. The earlier focused evidence below remains tied to its tested source revisions. Current-master integration `8c912e1ba4fc66397a7341ade59373af8075068f`: - Normally merge actual master `46fb933b0155d183ce64a8bdc4950d1b58c926f6`. Every nonoverlapping tree blob retains its owning parent across 14,044 paths. All 42 owner-only files and 15 critical binding/proof/readiness files remain byte-identical. Three automatic overlaps preserve the existing watchdog binding, conservative unavailable-reader fallback and optional actual owner arguments. The two scoped-deadline conflicts retain the entire upstream resource-reservation/mid-pass admission/abort algorithm inside the existing reconciliation revision/running/failure fence, with both parent test sets. - Actual TypeScript 7.0.2 server noEmit passed in 9.434 seconds, normal source declaration layers in 12.102 seconds, and four selected test/helper/config layers extending the actual CI configuration in 3.167 seconds. No compiler option weakening, heap override, donor declarations or SDK replacement stub. - Focused PG0 controls passed: 102 scheduler/proof/owner controls in 16.451 seconds, including all 21 scoped-deadline cases; 121 startup controls; and all 107 unchanged instance-settings route cases in 6.456 seconds. The latter first hit a local prewire-guard listener-registration race. Only the ignored guard was corrected to register the same actual OS-bound server port immediately after native listen returns. Closed, unknown, foreign, offhost and PG destinations remain blocked. Original failure evidence is retained; product code and assertions were unchanged. - The exact current UI policy command now reports zero findings (0.362 seconds); its seven scanner controls pass. The earlier dependent PR used an old scanner/source baseline under a newly enforcing trusted workflow and reported 397 findings. Carrying the genuine current master resolves that mismatch without editing unrelated UI sites or relaxing the gate. - Every meaningful worker checked its executing PID/thread/preload hash and matching receipt. PG0 controls opened no PostgreSQL sockets; all owned processes exited. Original dependency-cache/DNS, ignored-harness syntax/type and guard failures remain separate from product results. - This is fresh semantic and focused runtime qualification, not a local whole-repository or current-head PostgreSQL acceptance rerun. The upstream workspace-busy parked-retry/terminal-holder notification path remains unchanged by this merge and needs its separate current-graph producer check. Historical six-case/scale results below stay tied to their measured sources. A matching controlled default-cadence follow-up is in #19191; no fresh current-head two-cycle or deployed suspension claim follows from this merge. - All 59 exact-head check contexts now pass (55 success, one neutral, three intentional skips), plus the legacy security status. The complete edited Greptile review is 5/5 for this exact commit, with all root/nested pages inspected and no unresolved threads. Ponytail stopped without completing its new turn; it supplied no new verdict or finding. Prior actual findings remain addressed. Earlier scores/checks below belong to their explicit earlier commits. On frozen clean merged source `699c8569fa`: - Real PostgreSQL acceptance: **6/6 passed**,83.483 seconds wall. Actual retry producer creates the exact saved run/wake; stopped and reconstructed owner resumes through current admission, one durable start, real local process output and normal task completion. Includes cancellation, drain arrival, retained quota history with queued-run/wake negatives, watchdog review settlement and budget-input empty/pending/consumed control using the actual owner. - Affected coordinator, deadline, scoped-deadline, recovery and composed-proof controls: **78/78 in five files passed**,32.114 seconds wall, worker 1/no file parallelism. - `pnpm exec tsc --noEmit -p server/tsconfig.json`: **passed**,17.467 seconds. Native TypeScript 7.0.2 and Node 24.22.2. - PostgreSQL tests use one dedicated test database, matching fixture/admin URLs, pool limit four, one worker, and no embedded fallback. Every run recorded unchanged source hashes and a clean checkout. - The eight-second real-clock retry is a domain execution check. It is below the Cloud minimum wake lead and is not a positive accepted hosted sleep cycle. - The completed quota-history product failure and original fixture/protocol failures were preserved; the owning-reader fix passed a real PostgreSQL red/green regression before the fresh merged six-case pass. - After runtime completion, the dedicated database had zero other clients and no owned runtime processes. All three qualification process PIDs exited. The coordinator independently audits and drops the database. - Comment-only cleanup has equal strict TypeScript parser ASTs across 15 files. The final lexical audit finds no added comments relative to actual master. `git diff --check` passed. - Earlier retry fixtures omitted responsible-user membership, advanced JavaScript time past the real PostgreSQL lease clock, or produced stdout without normal task completion. Corrected fixtures use real membership, an eight-second real deadline, and ordinary task comment/completion. The last case exposed legitimate disposition repair rather than duplicate retry promotion. - The quota and watchdog controls first ran before admitted work or the existing 30-second reconstruction duty settled. The stronger tests require an interim blocked report and then exact settled-owner proof. Production deadlines were not changed. The separate completed-quota-history defect was fixed in its reader and verified with linked unfinished-run and wake controls. - The status/object and skill owners reviewed the actual final startup, route and post-backup bindings. Their domain source evidence carries where token-equivalent. The master coordinator coalescing change was reviewed separately. Historical domain PostgreSQL results are not presented as fresh full-suite results on this head. The later master merge adds retry predecessor cleanup checks under the existing issue claim lock. The source audit confirms unchanged saved deadlines and run/wake identities. The three actual retry lifecycle/cancellation/drain cases passed on the batched candidate with this parent (31.817 seconds). Those local dependency controls preceded the current exact-head remote run. Native backup preservation and TestOps changes from master are retained. No pass is inferred for changed dependency behavior solely from unchanged owned files. Review repair published as `643f1e7400`: - The original reader returned `unknown` after seven actual watchdog reviews settled across seven companies. The unchanged composed-report regression passed after batching; the final reader passed in 61.841 seconds, including active queued-work and stopped-owner rejection. - A separate two-company red/green control rejects terminal-run context from another company as first-run grace evidence. Shared facts are serialized once, with per-root IDs and review summaries. - The affected recovery, proof and diagnostic unit controls passed 47/47 (14.575 seconds). Startup owner-contract fixtures passed 121/121 (10.589 seconds). - Diagnostic PostgreSQL controls passed7/7 (12.406 seconds), including the normal budget-input producer and its exact blocker reason. Initial empty-state setup uses the same cleanup as per-case teardown when a dedicated test database is reused. - Actual repository `pnpm exec tsc --noEmit -p server/tsconfig.json` passed 12.710 seconds with no heap override. Final source has no added code comments; whitespace checks pass. - The original query-budget failure, two-company discriminator, initial cross-suite fixture failure and an interrupted incorrect local-driver selector are retained separately. The interrupted run is not a pass. Independent cleanup found zero owned clients or runtime processes. Quota-scale repair published as `6696a37f8a`: - The exact 10,000-row completed-history case reproduced `MAX_PARAMETERS_EXCEEDED`:90,002 bound parameters exceeded the driver's 65,534 limit, and the composed report returned `unknown` despite settled owners. Original failure and actual driver diagnostics are retained. - Fixed pending-work queries use three typed UUID-array parameters plus the result limit, keeping exact company/issue/source tuple bindings. The primary run-ID column stays uncast; a guarded CASE validates the raw external reference before conversion. The 10,000-row cap and 64-query/two-second proof budget are unchanged. - The same 10,000-row composed-report case passed 18.860 seconds, with unfinished run/wake rejection, malformed-reference safety and conservative 10,001-row overflow. Its fixture derives retained history from the actual quota producer and normal task completion, expands valid persisted issue/source pairs, then starts the actual registered owners. - The existing actual quota producer case passed 14.187 seconds, including exact future deadline, retained completion history, unfinished work, real foreign-company source references and noncanonical/malformed references. - Affected owner/proof controls passed 22/22 (26.444 seconds). Production server noEmit passed 16.039 seconds. - CI on 643 identified TS7034/TS7005 in the settled-watchdog fixture's initially untyped collection. It is now explicitly typed. A separate affected-entry semantic check extending the repository's actual `server/src/__tests__/tsconfig.json` passed 15.093 seconds: six affected tests, two owner files, ambient declarations and current imported source, with unchanged strict/module/lib/path settings. The production server config excludes that test directory and is not presented as test-layer proof. No custom suppression or replacement SDK stub was added. - All runs were sequential with pool max 4, worker 1, source/config/command hashes and cleared inherited provider/LIVE/other-database variables. Cleanup found zero owned database clients or local runtime processes. At prior head `6696a37f8a5718cd0f79054969a0084462d41d47`, all required CI gates pass. The exact-head inventory has 55 successes, one neutral review and three intentional skips. Greptile is 5/5. The complete latest Ponytail verdict confirms the quota finding is fixed; its only remaining note is optional unused MCP proof state, not a behavior defect. All three review threads are resolved. The earlier 643 result remains historical. The repository-wide typecheck, tests, build and browser gates passed in the prior `6696a37f8a5718cd0f79054969a0084462d41d47` CI run. The new `8c912e1ba4fc66397a7341ade59373af8075068f` full CI also passes. They were not run as a full local workspace command in the focused PostgreSQL lease. Local evidence above uses bounded external databases and does not claim embedded-cluster, live-provider or deployed-alarm qualification. ## Risks - An unsupported or uncertain owner state must remain blocked. An optimistic exemption could lose work while compute is stopped. - Changes during reconstruction or inspection must invalidate the proof. A memory-only timer is not durable alarm coverage. - Current authorization, budgets, cancellation, accounting, and resource ownership still apply on dispatch. The proof does not grant execution authority. - The supported writer model uses in-process transaction signals and startup/resume reconstruction. Independent SQL writers and other replicas need an explicit wake contract. - Native, review, coalesced, and taskless retry variants remain conservative until their owner cases qualify. Reviewer quota and hosted alarm qualification remain open. - The shared catalog remains opt-in. Legacy callers and missing owner bindings retain their old blockers. ## Model Used OpenAI `gpt-6.1-sol` was the configured model for the delegated service implementations and reviews. OpenAI Codex, based on GPT-6, performed managing review and integration. Both used repository tools and code execution. The exact served backend snapshots and context-window limits were not exposed. ## Checklist - [x] I have included a thinking path that traces from project context to this change - [x] I have specified the model used (with version and capability details) - [x] I have checked ROADMAP.md and confirmed this PR does not duplicate planned core work - [x] I have searched GitHub for duplicate or related PRs and linked them above - [x] I have either (a) linked existing issues with `Fixes: #` / `Closes #` / `Refs #` OR (b) described the issue in-PR following the relevant issue template - [x] I have not referenced internal/instance-local Paperclip issues or links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip` URLs) - [x] My branch name describes the change and contains no internal Paperclip ticket id - [x] I have run tests locally and they pass on the final merged head - [x] I have added or updated tests where applicable - [x] I have updated relevant documentation to reflect my changes - [x] I have considered and documented any risks above - [x] All Paperclip CI gates are green — exact current-head run passes - [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups — complete current-head review and all paginated threads inspected - [ ] I will address all Greptile and reviewer comments before requesting merge --------- Co-authored-by: Paperclip <noreply@paperclip.ing> |
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DottaandPaperclip
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f1911a4c53 |
perf(skills): move repository packages out of Postgres (#18082)
<!-- entire-trail-link-start --> https://entire.com/gh/paperclipai/-/trails/205/changes/paperclip/205 <!-- entire-trail-link-end --> ## Thinking Path > - Paperclip is the open source app people use to manage AI agents for work. > - Agents receive selected company skills before each turn. > - Imported skills can need files from the whole source repository. > - The current path stores those files in Postgres and reads large JSON payloads during preparation. > - This pull request stores verified packages in the configured file or object store and keeps preparation queries small. > - It also converts old rows automatically and restores missing files from the exact saved commit. > - The result reduces database traffic while preserving skill versions and repository dependencies. ## Linked Issues or Issue Description **What existing behavior does this improve?** Company skill import, version storage, and preparation before agent turns. **Current behavior** Repository snapshot bodies live in JSONB. Skill preparation can read those bodies again even when the files already exist on disk. Historical packages and native assets also need a bounded cleanup path. **Proposed behavior** Store package archives and manifests through the existing storage service. Keep version identities, receipts, hashes, and recovery metadata in Postgres. Convert legacy rows after the stored package passes read-back verification. A missing package can use legacy bytes or its exact Git commit under current repository authorization. No separate data-migration command is required. **Reason and benefit** The warm path sends no repository bodies through SQL and reads no object bytes. Cleanup runs through the existing deadline coordinator. Current versions, active runs, explicit pins, and authored content retain their protection. **Breaking changes** The normal application schema upgrade is required. Single-version and skill-file responses keep their existing shape. Version lists, current-version summaries, and test-run version summaries now contain file names and kinds without file bodies. Diff and restore fetch selected versions through the existing single-version endpoint. Older server builds must not write after conversion unless they support the new package format. The storage override and rollback limits are documented in `doc/skill-package-storage.md`. **Additional context** Related work: #15731 preserves repository dependencies; #17923 changes version-cache scheduling; #18080 changes delivery to remote Codex homes. This change owns package persistence, acquisition, and expiry. It does not replace those delivery or scheduler changes. ## What Changed - Add company-scoped archive receipts, exact-commit recovery recipes, migration deadlines, and a durable object-deletion queue. - Add bounded archive upload, read-back verification, extraction, concurrent request coalescing, and verified local caches. - Convert old snapshots and versions automatically. Keep legacy bytes when verification fails. - Recover missing files through current source authorization and the original commit. Validate repository identity, file hashes, modes, and the aggregate hash. - Expire unused recoverable Git packages and native assets after 30 days. Preserve active pins and the durable copy of authored or unproven content. - Keep warm preparation queries metadata-only. Bound file digest caches and avoid repeated body hashing when file identities are unchanged. - Extend the existing storage contract with cancellation. Register package work with the existing coordinator. Optional conversion retries retain the original bytes and may wait for ingress without blocking sleep. - Add regression tests, operating guidance, a deep trace, benchmark receipts, and an optional maintenance command. ## Verification ### Final master integration and review repair — October 29, 2026 Current head: `a6065424249e763dfeac37161f1b52a9f25bd9b7`. Commit `f8bbdd3dbd` resolves the conflicts with master `76a796e964`; the final two commits repair the Apex deletion findings below. - Keep both package-maintenance and version-retention notifications in their write transactions. - Keep the shared run-pin predicate and master's controller-lease deadline metadata. Package expiry reads the updated protected-version result. - Preserve every master migration entry. Generate migration **0415 (`0415_zippy_zemo.sql`)** after master's 0414. Its skill SQL is byte-for-byte unchanged from the previously tested idempotent migration. Retain only the five newest schema snapshots. Migration numbering and safety checks pass. - Repair failed file/folder deletion: preserve a complete temporary subtree until transaction commit, restore on upload or SQL failure, and restore callback failures before releasing the mutation lock. Both PostgreSQL regressions reproduced missing files before the fix and now pass. They cover binary data, executable permissions, empty folders, unlisted files, unchanged database/version rows, successful retry after upload-claim expiry, and historical reads. - Reconcile lost commit replies under the same advisory and row locks. Check the saved version and source identity before restoring. Keep committed deletions intact and preserve backups when the database outcome is unknown or a newer edit exists. Four real-PostgreSQL outcome tests pass; the prior code failed three of them. - Full workspace typecheck and production build pass on the final commit. All **204** focused PostgreSQL package/cache/retention/authoring and filesystem-boundary tests pass, with none skipped. - Apex review **18 passes 5/5**, with zero new comments on the exact final head. All **34** review conversations are resolved. - [Final-head CI](https://github.com/paperclipai/paperclip/actions/runs/40914116508) completes successfully on attempt 2. The head has **55 successful checks**, two neutral reports, two skipped checks, and a successful Snyk status. No checks are pending or failing. All eight browser shards pass. - Runner Vitest 2/2 timed out once in the unchanged ACPX controller-replacement fixture. The same job passed on the preceding commit. One unchanged CI retry passes all five ACPX recovery cases, **2,253** Runner package cases and **126** native server integration cases; their standard one and five skips remain. The initial timeout's root cause is not established. Local diagnosis also hit the fixture's eight-second session.open timeout with an authenticated Runner; no local Runner pass is claimed. - Both full local `pnpm test:run` attempts were stopped when Apex identified deletion defects and source repair became necessary; neither is claimed as a passing full local run. The final **204** focused tests, full workspace typecheck, and production build pass. Full-suite acceptance uses the final-head CI jobs. The superseded merge-head CI included runners terminated by shutdown signals; each source repair started a new full run. - Auto-merge is enabled for squash merge. The final head is conflict-free and all checks pass. GitHub's active master ruleset still requires a code-owner approval for the dependency files. The existing review requests are with `devinfoley`, `nickyleach`, and `forgottendev`; no policy bypass was used. - The earlier hosted stress and full native receipts below remain tied to `a2e597d800`; they are not relabeled as a deployment of this final integration. The earlier local PostgreSQL startup failure remains recorded below; PostgreSQL ran successfully for this integration verification. ### Full native skill execution — October 29, 2026 The full native-agent acceptance gap is closed on candidate `a2e597d800eb989d565780e7aa947d5368676444`. Two qualifying native turns used OpenAI API / `gpt-5.4-mini` in real Daytona sandboxes, on the same disposable hosted TEST tenant as the stress test. A follow-up on the same task consumed a newly saved skill version. The task text asked for the assigned skill workflow. It did not contain the proof nonce or expected receipt. The assigned authored skill contained a Python verifier and a random package-local nonce. The agent read the actual installed skill files and executed that verifier against the imported, automatically converted 1,360-file repository package. It checked the repository file count and reference/binary bytes, and directly executed the repository's executable probe. Independent verification matched the emitted JSON to the nonce and expected byte hashes. The agent persisted the same receipt as its task response; native finalization committed, workspace finalization succeeded, and task state became Done. | Qualifying turn | End-to-end run time | Recorded skills.prepare | Repository files | Binary hex | Shell receipt SHA-256 | |---|---:|---:|---:|---|---| | Initial task | 47.881 s | 1822 ms | 1360 | `00ff07800a` | `a1deb30dc095f2306c7aa9cc5ec396da12c68961cf5b809f4d7c20f7fc68493b` | | Corrected follow-up, new nonce/version | 37.974 s | 377 ms | 1360 | `00ff07800a` | `dbcdc33fa1376b4edc136feae1cdf770560a73292467e93619efdda20e4282a7` | Both successful shell receipts reported `probe: STRESS18082` and `assetSha256: e8ea7a2f15f7bb3b332a46adbef848465884c8996595aa234748befd544d1f3a`. Their proof nonces, selected version IDs and receipt hashes differed, and both ran on the same task. These are observed timings, not latency SLOs; they include real provider work. The service stress-test timings remain a separate measurement boundary. Earlier failures remain in the evidence: - The original five-minute Daytona allocation timeout never reached model execution. After normal owned-stack restore, its durable cleanup record was `expired` / `success`. The cause of that original allocation timeout remains unknown; a later success establishes recovery only. - Initial continuation setup used unsupported generic agent-update fields and returned HTTP 409 before dispatch. Setup was corrected to use the supported skill-assignment and versioned instruction commands. - The intervening completed native turn read repository bytes and ran the probe, but omitted the verifier JSON under the older test agent's overly-specific instruction file. Its strict receipt validator failed; it is not counted as a qualifying turn. Correcting the test agent's instruction file and sending an explicit task-scoped wake produced the qualifying follow-up above. - The pinned application's immutable rate card omits `gpt-5.4-mini`, so completed usage triggered the normal block-on-unpriced budget policy. Supported append-only accounting corrections estimated the three completed runs using the [official OpenAI model rate card](https://developers.openai.com/api/docs/models/gpt-5.4-mini): $0.75 input, $0.075 cached input, $4.50 output per million tokens, assuming standard processing. Estimates totaled 12.482655 cents. Original usage and missing-price records are preserved; the $1 hard stop and unpriced-usage guard stayed active. - Model shell attempts included a missing `xxd` command and incorrect guessed file paths. Those failed calls and subsequent successful actual verifier calls remain visible in complete event streams. No zero-tool-error claim is made. No product source changed during this continuation. The previously measured contention, cold-start and memory limits remain. The later merge resolution is covered by the separate integration checks above; these hosted receipts qualify their recorded candidate. ### Hosted stress test — October 29, 2026 **Hosted acceptance:** full native-agent execution and a changed-skill follow-up pass on the recorded hosted candidate. The final integration section above records the subsequent conflict resolution and its separate checks. Tested baseline `929e840595c8933ca485ac7a2e99413e1e11ca64` and this exact candidate sequentially on one disposable TEST tenant, with external Neon PostgreSQL and actual S3. The fixture contained **1,360 files / 22.4 MB / ten skills sharing one repository**. Measurements cover deployed skill-preparation and native-context services in an adjacent diagnostic process, not a complete agent turn. The container had **24 vCPU / 24 GB**. | Warm workload | Median before → after | p95 before → after | DB returned value bytes/preparation before → after | |---|---:|---:|---:| | One skill, serial | 1,060 → 125 ms | 1,303 → 155 ms | 22,610,389 → 1,771 | | One skill, four concurrent | 4,415 → 297 ms | 5,143 → 328 ms | 22,610,389 → 1,771 | | Ten skills, serial | 5,723 → 535 ms | 6,057 → 600 ms | 224,739,030 → 10,671 | | Ten skills, four concurrent | 24,410 → 1,986 ms | 24,833 → 2,221 ms | 224,739,030 → 10,671 | - Candidate warm preparation performed **zero S3 GETs**. Ordinary-pool queries fell from 16 to 9 for one skill and 61 to 9 for ten, excluding dedicated lock connections. DB numbers measure returned values before Drizzle decoding, not wire bytes. Baseline/candidate sample counts were 30/100, 32/100, 5/50 and 8/48 respectively; the small baseline ten-skill samples are comparative evidence, not SLO estimates. - **Application-UID soak:** 800 ten-skill preparations over 10.3 minutes, four workers paced by 2.5 seconds; **zero failures**, median **559 ms**, p95 **775 ms**, p99 **910 ms**, zero warm S3 reads. All 726 accompanying health/company-list requests returned HTTP 200. Their end-to-end p95 was 569/502 ms, including network latency. The probe overlaps most of the soak. Soak DB-response capture was limited to its first 60 seconds. - **Important remaining costs:** an unpaced 16-way ten-skill burst had p95 **8.32 seconds** because company-level preparation serializes. Cold preparation took approximately **1.1–2.5 seconds** for one skill and **7.4–10.0 seconds** for ten. Ten-skill diagnostic RSS remained about **1.17 GiB** (baseline 1.18 GiB), and the soak peaked at **1.35 GiB**. A concurrent whole-container sample was 3.45 GB. This does not establish suitability for a small-memory host or eliminate per-entrypoint native asset duplication. - **Upgrade without a manual data migration passed:** legacy snapshot JSON shrank from 22,465,691 bytes to `[]`, with a stored package and zero pending conversions. - **Recovery passed:** sixteen concurrent cold requests coalesced into two S3 GETs; full bytes/binary/executable modes matched; same-size corruption repaired; an injected storage failure preserved warm access and failed cold access safely. A disabled public-Git source denied recovery, and after the actual five-minute backoff its exact SHA reconstructed all 229 files. Cross-company descriptor access was denied. Private-Git credential revocation was not tested. - **Retention passed:** reclaimed 27,754,496 allocated cache bytes, deleted an unreferenced package row and both objects, preserved aged authored history, and expired/reacquired reconstructible Git content. A version pinned by the failed native run was correctly retained. Only owned fixture timestamps were aged. - **Browser UI passed:** authored skill creation, saved edit surviving reload, version history, and restoration of earlier content. - **Initial native attempt (superseded by the qualifying turns above):** one real run failed at Daytona allocation after five minutes (`setup_failed`), before any model execution. Provider cleanup also reported failure. That attempt does not count as a passing native turn. Its receipt and all evidence remain preserved; its cleanup later recorded success after normal restoration. - Initial A/B commands ran as SSH root. Diagnostic-owned lock/cache permissions caused one setup HTTP 500 and the first UID-1000 soak to fail; exact fixture paths were repaired. The final soak, retention and recovery ran as application UID 1000. A fresh UID-1000 one-skill batch also passed (30 samples, median 116 ms, p95 321 ms, 1,771 DB value bytes/preparation). Earlier harness-export, SSH, npm provenance, backoff and UI-wait failures remain recorded alongside their successful retries. - Private evidence includes raw timings, assertions, HTTP probes, screenshots and failure/cleanup receipts. Initial failed-campaign cleanup suspended and retained the owned TEST tenant and released the shared QA account lease at **15:22:41 UTC**. The tenant was subsequently resumed under its existing ownership for the native execution qualification above. Final cleanup completed at **15:53:09 UTC**: the account lease is released and the tenant is suspended/retained under the original October 30, 12:24:52 UTC retention deadline. Its separate stack lease remains held; no active or pending-cleanup environment lease remained. The original retention window is deliberately preserved even after successful continuation. - Earlier hosted-tested head: `a2e597d800eb989d565780e7aa947d5368676444`, integrated with master `929e840595`. The earlier merge conflicts were resolved at this head. [Current-head CI](https://github.com/paperclipai/paperclip/actions/runs/40884087629) passed; all checks are complete with 55 successes, two neutral reports, two skips, and no failures. [Apex review 15](https://github.com/paperclipai/paperclip/pull/18082#issuecomment-6480257258) passed 5/5 with zero findings on this exact head. All review conversations are resolved. - Ten real-filesystem boundary cases and server typecheck pass locally for the security fix. Coverage includes cache roots, descendants, individual files, symlink aliases, recursive ancestors, a future concurrent cache fill, and allowed sibling directories. [Current-head private-project integration tests](https://github.com/paperclipai/paperclip/actions/runs/40884087629/job/123483306405) passed all 29 cases, including authorized and unauthorized imports of a cached private package. Full typecheck, build, server suites, all eight browser shards, and Runner checks passed in current-head CI. Local database tests could not run because PostgreSQL could not initialize; this limitation is recorded below. - The earlier generated migration preserved the newest five snapshots. The final integration renumbers its unchanged SQL to 0415. Migration safety/numbering checks pass. Its SQL is byte-for-byte identical to the previously verified idempotent skill migration; repeated application on this latest schema was blocked by the same local database startup failure. - The broader verification before the final migration-only rebase passed 1,025 package, lifecycle, remote-launch, native-session, and asset-retention tests, 52 focused UI tests, full workspace typecheck/build, token gates, and map checks. The linked complete CI run passed before the latest focused fixes. - A disposable MinIO instance passed multipart upload, verified read-back, and cold restoration of an 18 MB archive. - Twenty warm samples with a synthetic 1,349-file, 22.8 MB repository retained five metadata queries and zero object reads. Median preparation was 256 ms for one selected skill and 691 ms for ten, with 5 ms emulated network delay each way. These are local measurements, not production latency guarantees. - No production instance was changed. Earlier verification failures and their disposition are retained below. <details> <summary>Earlier failures, review findings, fixes, and rerun evidence</summary> - The first CI pass found a stale inventory-span expectation and a missing repository-read span. Both are fixed; all three observability tests pass. One browser test copied page text into its YAML parser after reload; its first unchanged-head retry passed, but the race recurred after rebasing. The test now waits for the renamed URL and completed reload before copying the editor, retaining its original assertions. The earlier full local suite did not complete cleanly: it reported setup timeouts and assertions, while isolated relevant reruns passed. The complete current-head CI run closes that broad verification gap. No production instance was changed. - The first Apex review scored 2/5 and identified six issues. The fixes protect authored history even when it shares an in-flight Git upload, recheck upload expiry during orphan deletion, bound failed-upload cleanup, retain per-version kind/encoding metadata, add sanitized failure diagnostics, and correct the migration guide. The final focused run passes all 140 tests; the preceding eight-file run passed all 149 tests, including local storage and S3 diagnostics. Server typecheck and migration safety/numbering checks pass after the fixes. The second Apex review scored 1/5 and found unbounded maintenance storage calls and mismatched package/Git batch limits. Those are fixed with a 30-second cancellable cleanup deadline, shared 100 MiB/10,000-file scanner and storage limits, and bounded Git read batches. The proposed manual lockfile edit was rejected with evidence of the enforced CI-owned lockfile policy. All 19 storage/recovery unit tests and server typechecking pass. The new database-backed cleanup/conversion tests were locally skipped because the host exhausted its PostgreSQL semaphore capacity (confirmed directly by initdb). That gap is closed by current-head CI: [package-store tests](https://github.com/paperclipai/paperclip/actions/runs/40771320775/job/123109300889) pass all 18 cases and [package-worker tests](https://github.com/paperclipai/paperclip/actions/runs/40771320775/job/123109301157) pass all 7, with no skips in either suite. The corrected YAML browser shard passes. A separate planning-fixture test failed its cleanup DELETE with an activity-log foreign key violation after its behavior assertions passed; its one unchanged-head retry passed. The third Apex review scored 1/5 and identified a one-slot pool deadlock, projected path limits, cleanup holding the preparation lock during archive reads, and a publication/expiry race. These are fixed with transaction-local reads, prefix-aware bounds, isolated verification, and shared package row locks with a publication grace. The separate Paperclip review also found stale historical inspection, eager history downloads, and conversion retries blocking sleep. Those are fixed. Local PostgreSQL capacity recovered: the new database regressions ran, including the one-slot fork, paused storage during a warm turn, and a locked publication during expiry. The expanded run passed 144/145 tests; its remaining assertion still expected file bodies from the version list and was updated to fetch the selected version. The corrected company-skill suite passes all 81 tests, and the final package/projection run passes all 27. All 52 focused UI tests pass after updating their query-provider fixtures; the first UI run exposed a fixture remount, and the follow-up exposed an editing syntax error, both corrected. Full workspace typecheck and build, token gates, and map checks pass. The sandbox initially blocked the build tool’s local IPC socket; the authorized build rerun passed. Master then claimed migration 0401. The branch is rebased on |
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DottaandPaperclip
|
15176963b1 |
fix: stop idle skill-source polling (#17008)
## Thinking Path > - Paperclip manages agent work and the skills that agents use. > - Project repositories create durable import jobs, and installed sources can refresh automatically. > - The server queried these records every five seconds, even when no work existed. > - Idle tenant databases need to stop receiving those discovery queries. > - This change uses the existing transaction notifications and delivery coordinator. > - Saved refresh, retry, and lease deadlines determine when the worker runs next. > - Cloud does not yet wake these deadlines, so outstanding skill work retains the instance. ## Linked Issues or Issue Description **What existing behavior does this improve?** Skill-source background synchronization. This continues the idle-work migrations in #15625 and #17000. A search found no overlapping open polling-removal PR. **Current behavior** On master `b11010b0d4`, startup installs a five-second skill-source interval and also calls it from the external-object scheduler. Each sweep queries active companies, import capacity, pending imports, and automatic refreshes. **Proposed behavior** Run at startup, after a relevant transaction settles, or at a saved deadline. Stay SQL-quiet when no eligible work remains. Preserve import admission, authorization, atomic claims, retry backoff, and the existing five-minute upstream check. **Reason and benefit** Remove recurring database activity from inactive tenant instances without requiring new tables or a new scheduler. ## What Changed - Replace both recurring skill-sync calls with one delivery-coordinator registration. - Notify from attachment/detachment, source creation/settings/manual refresh/disconnection, project/company deletion, and company status changes, including budget resume. - Restore the earliest eligible `nextSyncAt` or lease-expiry deadline. Due backlogs and conflicts retry after five seconds; no idle recovery cadence remains. - Admit deferred imports again after a batch frees capacity. Preserve requests through drain, standby, restart, and commits during a sweep. - Add sleep-safety predicates for imports and eligible automatic sources until Cloud supports these deadlines. - Document the lifecycle and process-local writer contract. No schema or API changes. - Guard external test database URLs before migrations or cleanup: require a `_test` database name and reject database/options overrides. ## Verification - 147 targeted tests pass: 39 server-startup tests, 14 new real-PostgreSQL lifecycle tests, 20 shared coordinator/scheduler tests, 63 existing import/refresh/retry regression tests, and 11 test-database guard cases. - CI exposed a stale startup mock without the new `start` method. The fixture is updated and all 39 startup tests pass locally. - Tests exercise real enqueue/settings/company-reactivation producers, nested commit, rollback, saved retry/lease restart, manual refresh failure, capacity admission, concurrent commit, shutdown cancellation, and SQL quiet after startup or pause. - Sleep-safety tests reject sleep for future imports and automatic refreshes, and accept inactive retained state. - `pnpm -r typecheck` and `pnpm build` pass. - `pnpm test:run` was attempted and stopped after repeated embedded-PostgreSQL startup failures in unrelated suites. The two existing import/refresh suites initially skipped for the same host limitation; after adding explicit disposable-database options, all 63 regression tests passed against PostgreSQL 17. Full CI passed on `ddb3ee51369baa8c7153bae9fd88efb8b903f2bc`: 55 successful checks, one neutral review check, and two intentional skips. ## Risks - Notifications are process-local. Independent SQL writers and separate live replicas do not wake this worker; startup reconstructs persisted work. - Enabled automatic sources still contact GitHub every five minutes. Their upstream changes have no event ingress here. - Cloud scheduled wakes currently cover routines and issue monitors, not skill sync. This change retains instances with outstanding skill obligations. It does not claim measured host/database suspension or fleet savings. - No change to source authorization, installed content on failure, or existing claim semantics. ## Model Used OpenAI Codex, GPT-6 family, with reasoning, repository tools, and code execution. The host does not expose an exact model revision or context-window size to this session. ## Checklist - [x] I have included a thinking path that traces from project context to this change - [x] I have specified the model used (with version and capability details) - [x] I have checked ROADMAP.md and confirmed this PR does not duplicate planned core work - [x] I have searched GitHub for duplicate or related PRs and linked them above - [x] I have either (a) linked existing issues with `Fixes: #` / `Closes #` / `Refs #` OR (b) described the issue in-PR following the relevant issue template - [x] I have not referenced internal/instance-local Paperclip issues or links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip` URLs) - [x] My branch name describes the change (e.g. `docs/...`, `fix/...`) and contains no internal Paperclip ticket id or instance-derived details - [x] I have run tests locally and they pass - [x] I have added or updated tests where applicable - [x] I have updated relevant documentation to reflect my changes - [x] I have considered and documented any risks above - [x] All Paperclip CI gates are green - [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups - [x] I will address all Greptile and reviewer comments before requesting merge --------- Co-authored-by: Paperclip <noreply@paperclip.ing> |
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DottaandPaperclip
|
4460785534 |
fix(skills): preserve referenced files in large repository imports (#16308)
## Thinking Path
> - Paperclip is the open source app people use to manage AI agents for
work.
> - Agents use skills imported from project repositories.
> - Large repositories fall back to isolated skill folders.
> - That fallback drops shared files and turns advisory links into
import failures.
> - This pull request retains bounded referenced files and keeps missing
references advisory.
> - Users can import valid skills such as test-audit without editing the
source repository.
## Linked Issues or Issue Description
Refs #16066. Refs #16256. Refs #16288. Related draft #15730 adds
optional reference selection to individual skill packages. This fix
applies automatic repository fallback and does not add that selection
UI.
**What happened?**
A project source showed 86 warnings. It rejected 23 skills solely
because references were absent from the isolated package. It also
treated web routes and inline Markdown examples as files. For
test-audit, repository scripts were resolved inside the skill folder.
**Expected behavior**
Retain referenced files that fit the package limits. Missing references
must not block an otherwise valid selected skill. Preserve content
validation and installed shared files.
**Steps to reproduce**
Import paperclipai/paperclip at commit
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DottaandPaperclip
|
c36281d639 |
fix(skills): repair missing branches and show grouped import progress (#16256)
## Thinking Path > - Paperclip lets people manage AI agents and their reusable skills. > - GitHub skill sources must keep their installed content usable during updates. > - A source can track a branch that no longer exists. > - The UI treats that GitHub error as a connection problem, so saving a valid account does not resolve it. > - Project workspaces also show the same repository several times, and long imports give little feedback. > - This pull request adds explicit branch repair, groups repository imports, and shows import progress. > - People can repair the actual problem and see when their import is working. ## Linked Issues or Issue Description Refs #16066 and #14713. This fixes the Sources experience introduced by those changes. Related adapter-source PRs #14340 and #14341 cover runtime mounting, not this source-management flow. No overlapping source-management fix was found. **What happened?** An installed source tracked `main` while its GitHub repository used `master`. GitHub returned HTTP 422. The UI showed a general read error and asked for a new connection after a valid account was saved. The project repository list repeated the same repository/ref for each project. Import had no spinner or explanation of queued work. **Expected behavior** Identify an unavailable branch and offer an explicit repair. Retain the selected connection and installed versions. Show one repository/ref row with its projects. Give immediate feedback and show the queued and active import states. **Steps to reproduce** 1. Install a source with an immutable commit and a saved tracked branch that does not exist. 2. Refresh it, or try to save a valid GitHub connection. 3. Add the same repository/ref to two legacy project workspaces and open Sources. 4. Import that repository and observe the row until installation completes. ## What Changed - Distinguish a missing GitHub revision from access denial and temporary read errors. - Validate both repository identity and the tracked revision when saving a connection. - Offer Use default branch on independent sources and in connection repair. Keep `HEAD` as the default-branch alias after refresh. Preserve skill IDs, versions and selections. - Keep active project refs under project configuration. Reject source-level changes that would alter their tracking. Recheck the ref under the source lock when project attachment races with branch repair. - Group matching repository/ref workspaces. Adopt eligible workspaces and skip pending workspaces. Keep remaining project links inside the existing source card. Allow remaining imports while another workspace is pending. - Show a spinner, busy state and queued/importing text. Keep the saved authorized account selected in connection repair. - Update shared contracts, feature/access maps, database notes and production-component Storybook journeys. ## Verification - Red/green: three local regressions failed on the original code: missing-ref classification, duplicate repository rows, and branch repair instead of another connection prompt. The changed UI/reader tests pass after the fixes. - Live local app with a real authorized GitHub credential: reproduced HTTP 422 for the unavailable branch; used the UI to restore default-branch tracking; confirmed the same connection, skill ID and single immutable version remained. - Live local grouped Paperclip import: one source, two project associations and 52 installed skills. Sources survived reload. No staging data was changed. - All 16 project repository Storybook browser journeys pass on the final head, including keyboard focus recovery after branch repair. These include branch repair, grouped imports, connection selection, recovery, removal and responsive layouts. - Repository typecheck, production build, Storybook build, token gates and 28 map/catalog tests passed. Final UI typecheck and build also passed after grouping remaining project links. - Linux qualification: all 94 focused source, project import, GitHub reader and UI tests pass with supported Node 24. No database tests were skipped. Both review findings failed before their fixes and pass after them. - The full local `pnpm test:run` attempt was stopped after macOS database suites exhausted the host shared-memory limit. The complete Linux CI matrix is the full-suite gate. The complete Linux CI matrix passes for head `f886e3ac073ec1c6f051fd6429496234f5143694`. - Greptile rates head `f886e3ac073ec1c6f051fd6429496234f5143694` 5/5. Both findings are fixed and all review threads are resolved. - Storybook: `skills-project-repository-skills-02-journeys--missing-branch` and `--duplicate-projects`. ## Risks - Default-branch repair changes the tracked branch only after an explicit user action. Existing execution version pins stay intact. - A selected connection now needs access to the tracked revision, not only repository metadata. - Grouping is by repository and ref. Project access and provenance remain separate and are checked by the existing services. - Legacy source errors contain safe text. The repair-action classifier maps known errors and treats other failures as retryable. No credentials or provider response bodies are returned. - No schema migration, workflow change, lockfile change or staging deployment. ## Model Used OpenAI Codex, GPT-6 family. The exact serving model identifier and context-window size are not exposed in this session. Tool-assisted implementation, code execution and browser verification. ## Checklist - [x] I have included a thinking path that traces from project context to this change - [x] I have specified the model used (with version and capability details) - [x] I have checked ROADMAP.md and confirmed this PR does not duplicate planned core work - [x] I have searched GitHub for duplicate or related PRs and linked them above - [x] I have either (a) linked existing issues with `Fixes: #` / `Closes #` / `Refs #` OR (b) described the issue in-PR following the relevant issue template - [x] I have not referenced internal/instance-local Paperclip issues or links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip` URLs) - [x] My branch name describes the change (e.g. `docs/...`, `fix/...`) and contains no internal Paperclip ticket id or instance-derived details - [x] I have run tests locally and they pass - [x] I have added or updated tests where applicable - [x] I have updated relevant documentation to reflect my changes - [x] I have considered and documented any risks above - [x] All Paperclip CI gates are green - [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups - [x] I will address all Greptile and reviewer comments before requesting merge Co-Authored-By: Paperclip <noreply@paperclip.ing> |
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DottaandPaperclip
|
473c80d13f |
Automatically import and update project repository skills (#16066)
Automatically import skills from new GitHub project repositories and update enabled sources in the background. Preserve project-derived access, saved selections, immutable execution versions and explicit pins; add legacy adoption, refresh and connection repair in Sources. Include durable scheduling and bounded work credits, production Storybook journeys, real GitHub-to-routine acceptance receipts and final-head CI/security/Greptile qualification. Co-Authored-By: Paperclip <noreply@paperclip.ing> |