Accept bounded Codex deprecation notices after a settled turn and require that capability before reusing a sandbox image runner. Stage replacement artifacts atomically so existing launchers and image symlink targets survive interrupted uploads.
Co-Authored-By: Paperclip <noreply@paperclip.ing>
Bind validated OpenCode result notifications to the active provider process and turn, matching semantic tool responses. Reproduce the live shutdown failure and verify exact durable authority after interruption.
Co-Authored-By: Paperclip <noreply@paperclip.ing>
Mock the native shutdown boundary in the startup unit test and wait for the persisted process identity before allowing the runtime readiness fixture to listen.
Co-Authored-By: Paperclip <noreply@paperclip.ing>
Park idle native sandbox sessions before app shutdown, adopt retained legacy workspaces without restaging Git, and carry explicitly bound GitHub access through both OpenCode launch filters.
Co-Authored-By: Paperclip <noreply@paperclip.ing>
Validate paginated legacy lease candidates before choosing a workspace, preserving Postgres timestamp precision. Recover failed saves through a new authorized run and cover post-save finalization failures without replaying terminal cleanup.
Co-Authored-By: Paperclip <noreply@paperclip.ing>
Bundle the task disposition helper with the installed Paperclip skill. Retry transient read-only file transfers within a fixed deadline and retain sandbox RPC caller provenance for staging failure diagnosis.
Co-Authored-By: Paperclip <noreply@paperclip.ing>
Select Codex ACP's full-access initial mode only for host-validated external work-folder environments with approve-all authority. Keep local and restrictive permission modes unchanged. The regression failed before the fix; all 50 ACP environment and runtime tests pass.
Co-Authored-By: Paperclip <noreply@paperclip.ing>
Keep established tasks on their original filesystem and session layout. Recover version-1 lease identity from host run records, preserve configuration checks, and retain old work when ownership or resume cannot be verified.
Co-Authored-By: Paperclip <noreply@paperclip.ing>
Reproduce Codex plugin-cache repositories with real Git and preserve private-runtime exclusions before validating directory entries.
Co-Authored-By: Paperclip <noreply@paperclip.ing>
Report incomplete terminal saves without hiding the latest successful checkpoint, including same-sandbox continuation and replacement failures.
Co-Authored-By: Paperclip <noreply@paperclip.ing>
Align durable journal validation with the transport bound, preserve authorization on cached storage clients, and avoid Cloud session gates for native Git callbacks.
Co-Authored-By: Paperclip <noreply@paperclip.ing>
Defer cached-file debugging and live sandbox inspection as separate features. Keep the saved-file browser only as an unshipped Storybook prototype.
Co-Authored-By: Paperclip <noreply@paperclip.ing>
Require a reviewed lock digest for staging migrator and app builds so registry drift fails before lifecycle-enabled installation.
Co-Authored-By: Paperclip <noreply@paperclip.ing>
Preserve migration SQL hashes when renumbering and keep sandbox HOME with managed GitHub shell profiles.
Co-Authored-By: Paperclip <noreply@paperclip.ing>
## Thinking Path
> - Paperclip is the open source app people use to manage AI agents for
work.
> - The recent tasks sidebar helps operators return to active and
completed work.
> - Task detail refreshes update the activity timestamps used to sort
that list.
> - Older responses can undo newer activity. Concurrent updates can move
rows repeatedly.
> - This pull request preserves the newest observed activity and
debounces row moves.
> - Operators can select a stable row while task text and live state
stay current.
## Linked Issues or Issue Description
**What happened?**
Recent task rows can repeatedly swap positions when two tasks receive
updates. Older detail responses can also move a task below another task
after a newer comment promoted it.
**Expected behavior**
Rows remain stable during an update burst. The final activity order
appears after one second of quiet. Old responses never reduce the
recorded activity time.
**Steps to reproduce**
1. Enable the streamlined UI and open multiple tasks.
2. Send alternating updates to two tasks in the recent list.
3. Observe row order while those updates arrive and while older detail
data refreshes.
**Paperclip version or commit**
Base commit: 1cc45086d.
**Deployment mode**
Board UI. The behavior is independent of the server deployment mode.
Related work: #12854 and #12746 introduced the current navigation.
#12314 is an earlier experimental sidebar proposal; this fix targets the
implementation already on master.
## What Changed
- Keep stored activity timestamps at their newest observed value in both
recording paths.
- Debounce activity-driven row moves for one second. Keep additions and
removals immediate.
- Keep detail query observers in a fixed order and resolve task text by
task ID.
- Add regression coverage for alternating updates, stale data,
additions, and removals.
- Document recent task ordering in the development guide.
## Verification
- Passed: 17 focused recent task tests.
- Passed: `pnpm check:token-gates`.
- Passed: `pnpm -r typecheck` and `pnpm build`.
- Passed: Greptile 5/5 on commit
`8861961de9aaa7e9a8184826bc5ce367450f9e8a`, with no review threads or
actionable findings.
- Passed: all 31 remote checks, including all general and serialized
test shards, browser tests, release verification, and build. The opt-in
Storybook visual check was skipped by policy.
- One unrelated concurrent artifact-document test failed on the first CI
attempt. Its 11-test suite passed locally, and the single CI retry
passed without code changes.
- The duplicate full local `pnpm test:run` was started; the completed CI
suite provides the full-suite result.
- Regression tests use fake timers to check that rows remain fixed
during alternating activity, text refreshes immediately, and the final
order appears after one second of quiet.
## Risks
- Continuous activity intentionally delays row moves until updates
settle. New and removed tasks still appear immediately.
- Storage format and server contracts stay compatible. No migration is
needed.
## Model Used
OpenAI GPT-6 through Codex, with reasoning, repository inspection, code
editing, and test execution. The exact deployment model ID and context
window size are not exposed in this session.
## Checklist
- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have searched GitHub for duplicate or related PRs and linked
them above
- [x] I have either (a) linked existing issues with `Fixes: #` / `Closes
#` / `Refs #` OR (b) described the issue in-PR following the relevant
issue template
- [x] I have not referenced internal/instance-local Paperclip issues or
links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip`
URLs)
- [x] My branch name describes the change (e.g. `docs/...`, `fix/...`)
and contains no internal Paperclip ticket id or instance-derived details
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [x] All Paperclip CI gates are green
- [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups
- [x] I will address all Greptile and reviewer comments before
requesting merge
Co-authored-by: Paperclip <noreply@paperclip.ing>
Keep the execution target identity through workspace realization, restore its saved home for finalization, and distinguish warm setup reuse from replacement dependency recovery. Label direct file updates separately from agent checkpoints.
Co-Authored-By: Paperclip <noreply@paperclip.ing>
Keep the execution target identity through workspace realization, restore its saved home for finalization, and distinguish warm setup reuse from replacement dependency recovery. Label direct file updates separately from agent checkpoints.
Co-Authored-By: Paperclip <noreply@paperclip.ing>
## Thinking Path
> - Paperclip is the open source app people use to manage AI agents for
work.
> - Several people can send instructions to the same agent and task.
> - A fixed GitHub token in the provider process can keep the first
person's access after another person's message is accepted.
> - Task ownership cannot select credentials for each accepted
instruction or preserve the identity of an operation already in
progress.
> - This pull request records ordered execution identity contexts and
resolves credentials when managed Git, gh, or GitHub tools start.
> - The benefit is automatic personal GitHub access for shared agents,
with durable continuation rules and no teammate credential fallback.
## Linked Issues or Issue Description
**Subsystem affected**
Cross-cutting: orchestration, connection grants, database, runtime
adapters, native runners, and run details.
**Problem or motivation**
A shared agent must use the person whose instructions it has accepted. A
queued message must retain its author. A retry or approval without new
instructions must retain the originating identity. GitHub must remain
optional for ordinary work.
**Proposed solution**
Persist execution identity separately from task ownership. Give new
processes a run-scoped broker capability and token-free managed
launchers. Capture identity at operation start. Keep an explicit
dedicated-agent grant as an override. Show redacted diagnostics in run
details.
**Alternatives considered**
Per-task ownership, fixed provider tokens, and mutable repository author
configuration do not handle accepted steering or concurrent operations.
A manual account-selection action would add unnecessary setup to each
turn.
**Roadmap alignment**
This completes the existing Multiple Human Users, MCP Tool Gateway &
Apps, Secrets Manager, and Self-healing Runs capabilities. The
implementation follows the maintainer-approved plan.
Related work: Refs #12843, Refs #12907. Existing proposals #4618 and
#8945 cover per-agent or per-worktree author configuration. This change
instead follows the accepted human instruction across runtime types.
Refs #11831 for governed personal connection delegation; this change
preserves connection audience checks and does not use standing
delegation as a personal credential fallback.
## What Changed
- Add durable, ordered identity contexts and active run references.
Preserve message authors through consolidation, steering, retries,
delegation, approvals, routines, and restart.
- Add an authenticated operation-time GitHub credential broker and
local/remote managed git and gh launchers. Keep personal tokens out of
the long-lived provider process.
- Resolve GitHub gateway and server-side Git operations through the same
responsible-person or dedicated-grant selection rules.
- Make absent and unavailable GitHub credentials non-blocking at generic
startup. Clear host and prior-person credentials. Keep anonymous Git
access where supported.
- Add run-detail identity history and the dedicated-account warning.
Keep task ownership and queue-versus-steer decisions unchanged.
- Preserve personal OAuth declarations through connection edits. Retain
exact selected grants in the gateway.
- Fix continuation races found during real acceptance: verify a warm
owner before credential rotation, and wait for bounded durable runner
suspension before the next run starts.
- Make migrations replay-safe. Retain identity through agent/run
deletion, remove it with its company, and clean terminal launcher
directories before releasing execution environments. Document
coordinated release and rollback.
## Verification
- Full workspace typecheck, build, and token gates passed. The complete
local suite passed in its normal test groups: 17,120 passing tests,
including all 143 serialized server suites. After integrating the newly
merged runner API work, full local typecheck and build passed again,
along with 890 focused integration tests. All 31 checks on the
integrated revision passed, including build, browser E2E, release
registry, canary dry run, typecheck, security and all test suites.
Greptile is 5/5 with all review threads resolved.
- Current focused checks passed: 142 native executor tests, 67 runtime
lifecycle tests, 9 durable identity tests, 75 credential/routine tests,
19 low-trust/resumption tests, and the executable migration replay test.
- Authenticated browser acceptance with two Paperclip users and two
GitHub accounts on one shared native agent passed. Real commits and
pushes followed A → B accepted steering → queued A continuation in the
same saved conversation. GitHub commit author and committer identities
matched all three operations. Both runs succeeded and task ownership
stayed unchanged.
- Real GitHub MCP calls switched from A to B after accepted steering. A
delegated subtask retained its originating identity across a server
restart.
- Disabling B's GitHub connection left ordinary work successful. Managed
gh was unauthenticated and the provider had no inherited GH_TOKEN or
GITHUB_TOKEN.
- The browser displayed run-detail diagnostics and the exact
dedicated-account warning. A final controller-restart check followed by
another-person continuation retained the conversation, selected the
correct GitHub login and Git author, and removed each terminal launcher
directory.
- Company-lifetime migration and all five previously failing CI suites
passed locally (167 tests). Same-token gateway A → B → A and six
broker/launcher boundary tests passed.
- Remote callback, launcher, sandbox, and runtime contract tests passed.
Both native and legacy Codex completed actual Daytona executions on the
integrated revision ([campaign
results](https://github.com/paperclipai/paperclip/actions/runs/34155056509)).
The remote package-manager shim staging regression also passed locally.
## Risks
- Deploy the migrations, server broker, launchers, and runner artifacts
together. Existing processes finish with their original contract. New
managed processes need the broker endpoint for GitHub operations.
- Finish or stop new managed executions before rolling application code
back. Keep the additive schema and identity history during rollback.
- Scripts that require a persistent raw GH_TOKEN must use managed git,
gh, or GitHub gateway tools. Run capabilities authorize code executing
within that run to acquire its current identity; this is not
hostile-code isolation within one execution principal. Managed commands
prevent automatic credential carryover; arbitrary code deliberately
copying a credential is outside that boundary.
- Uncertain steering acknowledgement deliberately holds new credential
acquisition until reconciliation. Already-started operations retain
their captured identity.
- GitHub private access and provider outages can still fail the specific
operation that needs them. Dedicated grant failure does not fall back to
personal access.
## Model Used
OpenAI GPT-6 through Codex assisted implementation, review, shell
execution, and browser acceptance. The exact model variant and
context-window size are not exposed in this session. Tool use included
TypeScript and Rust tests, database integration tests, GitHub CLI, and
authenticated browser control.
## Checklist
- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have searched GitHub for duplicate or related PRs and linked
them above
- [x] I have either (a) linked existing issues with `Fixes: #` / `Closes
#` / `Refs #` OR (b) described the issue in-PR following the relevant
issue template
- [x] I have not referenced internal/instance-local Paperclip issues or
links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip`
URLs)
- [x] My branch name describes the change (e.g. `docs/...`, `fix/...`)
and contains no internal Paperclip ticket id or instance-derived details
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [x] All Paperclip CI gates are green
- [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups
- [x] I will address all Greptile and reviewer comments before
requesting merge
---------
Co-authored-by: Paperclip <noreply@paperclip.ing>
## Thinking Path
> - Paperclip manages AI agents and their work.
> - The new runner gives agents dedicated tools for common tasks.
> - Some API operations and parameters have no dedicated tool.
> - Agents need a controlled way to find and use those operations.
> - This pull request adds API search and calls through the real server
routes.
> - Existing tools remain the preferred path. The new tools are disabled
by default.
> - Paired tests measure correctness, tool choice, cost and time.
## Linked Issues or Issue Description
**Subsystem affected**
Paperclip Runner contracts, production tool authority and the server API
catalog.
**Problem or motivation**
The runner cannot use much of the API described by the old Paperclip
skill. A generic HTTP client would also let agents bypass runner control
rules.
**Proposed solution**
Add `search_api` and `call_api`. Resolve calls from the mounted API
catalog. Use server-held, run-bound credentials. Preserve route checks
and runner lifecycle rules. Keep the tools disabled until an operator
enables selected companies.
**Alternatives considered**
A dedicated tool for every endpoint would add a large initial prompt. An
unrestricted HTTP tool would weaken authorization and replay controls.
**Roadmap alignment**
This extends the native runner tooling. The repository owner requested
this design and implementation. The roadmap and related open PRs were
checked. No duplicate API escape-hatch PR was found.
## What Changed
- Register two compact fallback tools in canonical contracts and
provider projections.
- Build deterministic API discovery from OpenAPI, mounted experimental
routes and the old skill reference.
- Execute bounded JSON, text, file and download requests through
authenticated HTTP routes.
- Recheck active runs, company access and work modes. Block runner
lifecycle, scheduling, credential and approval bypasses. Keep routine
annotation collaboration available.
- Retain mutation receipts. Report uncertain outcomes without blindly
repeating writes.
- Add a company rollout gate and a durable eval worker with complete
cost accounting checks.
- Record child-task creation in the activity log with the agent and run.
- Add contract, authorization, file, replay and real runnerd/PRP/HTTP
tests.
- Document rollout gates and paid coverage limits. The companion eval
repository retains immutable attempts and reports.
## Verification
- Final app commit `da58370524c3626a744eec20164397c5fb6ba9ef`: all 32
checks passed; the unrelated Storybook visual check was skipped.
Greptile 5/5; no unresolved review threads.
- Full Linux build and recursive typecheck passed. Repository tests were
run by project and serialized shard; all 143 serialized server suites
passed.
- Runner TypeScript: 1,599 passed, two skipped. Rust release: 451
passing test reports. Conformance and replay parity passed. The required
API check passed 837 tests, including runnerd → PRP → authority → real
HTTP.
- Bindings cannot enable API tools without the explicit deployment flag.
Unit and real-authority tests prove the default-off boundary.
- The standalone API check builds and stages its own binary. It passed
after existing staged and debug binaries were removed from the test
container.
- UI and CLI tests passed. Initial environment failures (missing jq,
Docker overlay file identity, and parallel linker memory pressure) and
focused passing reruns are retained. The macOS full runner suite has
platform-specific failures; Linux is the qualified full-check platform.
- Eval harness: 27 tests passed; existing CI discovery ran 86 tests with
two unrelated skips. Credential export rejection is tested against the
actual report command.
- Luna and OpenRouter Sonnet each passed 60 common-workflow runs: ten
workflows, three repetitions per arm, zero unnecessary API fallback.
- Sonnet passed 11 selected capability/contract cases after fixes.
Gemini passed three smoke cases. DeepSeek exceeded the 120-second limit
and remains unqualified.
- Luna's two cost flags received focused follow-up. The original flags
and a later n=1 latency flag remain visible. Sonnet had no cost or
latency increase above 20%.
- The catalog contains 785 entries; 58 were exercised across all stages.
Most operation probes remain unrun and some need additional fixtures.
Authored probes do not establish successful coverage.
- Total conservative accounted cost: $9.875960. Active paid-campaign
time: 88.16/90 minutes. No missing accounting. Later security and
harness fixes have provider-free verification; no paid validation is
claimed for those revisions.
- Inspect the [qualification
report](https://github.com/paperclipai/paperclip-evals/blob/codex/seach-call-api-tools/evals/runner-api-tools/reports/2026-09-07-production/READINESS.md)
and [verification
record](https://github.com/paperclipai/paperclip-evals/blob/codex/seach-call-api-tools/evals/runner-api-tools/reports/2026-09-07-production/verification.json).
## Risks
- This is a broad authenticated API surface. Keep the default-off gate
until an operator selects initial rollout companies.
- Paid coverage is incomplete. Small regression samples do not prove all
workflows are unchanged.
- A timeout or server failure can follow a committed mutation. The
result reports an unknown outcome and requires state inspection.
- The new definitions add prompt tokens. The report retains cost flags
and cache variation.
- No database migration is required.
- Repository rules require code-owner approval before merge. Technical
CI and automated review are complete.
## Model Used
OpenAI Codex based on GPT-6 assisted with code, tests and review. The
exact serving model ID and context window are not exposed in this
session. It used reasoning, tool calls and code execution.
Eval models: `gpt-5.6-luna` with low reasoning,
`openrouter/anthropic/claude-sonnet-5`,
`openrouter/google/gemini-3.8-flash`, and
`openrouter/deepseek/deepseek-v4-flash-0731`. Attempts retain runtime
versions, model identity, usage and source provenance.
## Checklist
- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have searched GitHub for duplicate or related PRs and linked
them above
- [x] I have either (a) linked existing issues with `Fixes: #` / `Closes
#` / `Refs #` OR (b) described the issue in-PR following the relevant
issue template
- [x] I have not referenced internal/instance-local Paperclip issues or
links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip`
URLs)
- [x] My branch name describes the change (e.g. `docs/...`, `fix/...`)
and contains no internal Paperclip ticket id or instance-derived details
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [x] All Paperclip CI gates are green
- [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups
- [x] I will address all Greptile and reviewer comments before
requesting merge
---------
Co-authored-by: Paperclip <noreply@paperclip.ing>
Use object-storage artifact URLs and Actions build artifacts without creating releases. Fix both native session entry points, preserve the primary workspace environment, and declare upload headers in OpenAPI. Tests cover sandbox home confinement, session dispatch, and generated headers.
Co-Authored-By: Paperclip <noreply@paperclip.ing>
Require explicit user sign-off for merges and mainline releases. Document the pending staging-only artifact replacement.
Co-Authored-By: Paperclip <noreply@paperclip.ing>
## Thinking Path
- Paperclip Runner needs its runtime preinstalled for fast sandbox
startup.
- Native and local adapters should launch one current CLI installation
per provider.
- An older global copy can shadow that installation, and exact native
compatibility pins must match it.
- Update the qualified releases and binary digests, expose shared CLI
entrypoints from the provider pack, and prefer the image-owned bin
directory.
- Keep dependency installation in the image build; task startup only
discovers, links, and verifies artifacts.
## Linked Issues or Issue Description
**What happened?**
Remote native startup rejected a stale global Codex, while CLI-only
images lacked runnerd entirely.
**Expected behavior**
An image-baked runtime starts without uploading binaries or installing
packages. All adapters share the same current provider CLI.
**Steps to reproduce**
Start a native remote task with the old global Codex and the updated
runtime available only under `/opt/paperclip-runner/bin`.
**Paperclip version or commit**
Discovery behavior at `54a99d884`.
**Deployment mode**
Docker with a remote sandbox.
## What Changed
- Prefer `/opt/paperclip-runner/bin`, then the user's local bin
directory, then PATH. Existing metadata and version validation remains
in force.
- Qualify Codex 0.153.4, OpenCode 1.18.29, and Claude SDK 0.3.263 / CLI
2.1.263. Update binary digests, TypeScript/Rust checks, registry
defaults, and the displayed OpenCode version together.
- Share Codex and Claude's native executable with the ACP bridges
through exact dependency overrides. Preserve the separately qualified
ACP bridge implementations and their security patches.
- Expose shared provider-pack CLI launchers; fail the pack build if
Codex ACP resolves a separate Codex installation. Update the eval
image's other agent CLIs to current stable releases and remove duplicate
global provider installs.
- Document the single-current-CLI policy in source comments and
development guidance. Latest stable releases are resolved at
review/build preparation and pinned; task startup never auto-updates.
## Verification
- Native-session and adapter-registry suites: 158 tests passed.
- Provider suites: 88 tests passed, 7 Linux-only checks skipped on
macOS. One existing macOS temporary-path alias assertion passed when
rerun with canonical `TMPDIR=/private/tmp`.
- Package-contract and OpenCode materialization tests: 11 passed.
- Full typecheck, build, and token gates passed. Rust
native-provider/recovery tests: 19 passed.
- Broad local suite: 5,974 passed, 23 failed, 41 skipped. Failures are
in unchanged macOS workspace/path/port and connection suites; focused
runtime tests pass. All latest-head Linux PR checks passed, including
the full test shards, typecheck, build, runner verification, browser
suites, and canary dry run.
- The standalone fleet image built with one current provider CLI each
and passed native Codex/Claude binary-integrity checks. A disposable
Daytona sandbox reported ready in 798 ms; its baked runner completed an
API-key `gpt-5.6-luna` turn in 2,430 ms and returned the expected marker
with a usage receipt. No runtime artifacts were uploaded or installed.
- The normal shared `codex exec` entrypoint also completed an API-key
`gpt-5.6-luna` turn in 2,321 ms.
- Both image builds verify the complete generated lockfile against a
reviewed SHA-256 before package installation or lifecycle execution.
Root lockfile changes remain CI-owned. Merge and rollout remain on hold
for operator review.
## Risks
- Updating provider CLIs changes their behavior for all adapters;
version probes and live native smoke testing are required before image
promotion.
- The image-owned directory takes precedence. Its entries must launch
the same shared CLI as the global PATH, not a private older/newer copy.
- Application qualification pins and the deployed image must move
together. No startup fallback installation is added.
- No schema or authentication-policy changes.
## Model Used
OpenAI GPT-6 (Codex). The session does not expose a more specific model
ID or context-window size. Used reasoning, repository inspection, code
execution, and browser verification.
## Checklist
- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have searched GitHub for duplicate or related PRs and linked
them above
- [x] I have either (a) linked existing issues with `Fixes: #` / `Closes
#` / `Refs #` OR (b) described the issue in-PR following the relevant
issue template
- [x] I have not referenced internal/instance-local Paperclip issues or
links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip`
URLs)
- [x] My branch name describes the change (e.g. `docs/...`, `fix/...`)
and contains no internal Paperclip ticket id or instance-derived details
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [x] All Paperclip CI gates are green
- [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups
- [x] I will address all Greptile and reviewer comments before
requesting merge
---------
Co-authored-by: Paperclip <noreply@paperclip.ing>
## Thinking Path
> - Paperclip is the open source app people use to manage AI agents for
work.
> - GitHub connections give agents access to approved repositories.
> - One GitHub identity can use installations across several
organizations.
> - The permissions page linked to one installation and showed an
unfiltered list.
> - Users could not easily find another organization or inspect a large
selection.
> - This change adds account filtering, search, and access configuration
links.
> - Users can inspect repository access in one compact view.
## Linked Issues or Issue Description
Refs #12993. Related repository-catalog work in #11228 and #11234 was
checked. This change only improves the existing GitHub connection
permissions page.
**What existing behavior does this improve?**
The GitHub connection permissions page and its repository display
metadata.
**Current behavior**
The page links directly to an existing installation. The repository list
has no account filter, search, height limit, or private-repository
marker. Refresh access occupies a separate section.
**Proposed behavior**
Show all authorized repositories by default. Filter by account or
organization and search by name. Open GitHub's account chooser to
configure access across organizations. Show GitHub icons and
private-repository locks. Keep refresh beside configuration and limit
the visible list to about ten rows.
**Reason and benefit**
Users can find repositories across organizations and configure missing
access without creating another GitHub identity. Large repository lists
no longer fill the page.
**Breaking changes**
None. Repository display metadata gains an optional private flag. Older
snapshots remain valid and gain the flag after access refresh. No SQL
migration is required.
## What Changed
- Add an All accounts view, account filter, search, and empty states.
- Link both configuration controls to GitHub's app account chooser.
- Place an accessible refresh icon beside the configuration button.
- Keep the repository heading and list in one section.
- Add GitHub icons and private-repository locks.
- Cap the scrollable list at ten rows using a design token.
- Persist GitHub's private flag only when the provider returns a
boolean.
- Recover missing legacy app configuration from GitHub installation
metadata.
- Update tests and the GitHub connection runbook.
## Verification
- Focused tests passed: 54 permissions-page tests and four GitHub
metadata tests.
- UI and server typechecks passed before submission. Token gates passed.
- Browser checks verified account filtering, search, empty results, and
the configuration destination.
- The live list contained 40 repositories. Its final height was 272
pixels, which fits ten single-line rows with gaps. Scrolling retained
all rows.
- A live access refresh populated 30 private-repository lock icons from
GitHub metadata.
- Full workspace typecheck and build passed. The broad local suite
stopped in the general-server group with 18 failed files. Failures
include macOS temporary-path handling and embedded PostgreSQL startup.
That run also overlapped the legacy fix and retained a stale GitHub
module; the final focused run passed all 58 tests. Clean-runner CI is
tracked separately.
- Latest-head review is 5/5 with the legacy chooser finding resolved.
All CI checks passed on commit
`0ff2b63f348f5c87d8b7df6e43388f60f5d872d9`, including build, typecheck,
all test shards, browser tests, and canary dry run.
## Risks
- Older repository snapshots lack visibility metadata until refreshed.
Unknown visibility does not display a lock.
- The account filter lists authorized installation owners. Users add
other organizations through GitHub's chooser.
- Filtering changes only the displayed list. GitHub remains
authoritative for repository access.
## Model Used
OpenAI GPT-6 (`gpt-6-astra`) via Codex. Reasoning, code execution, and
browser tools were used. The exact context window size was not exposed.
## Checklist
- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have searched GitHub for duplicate or related PRs and linked
them above
- [x] I have either (a) linked existing issues with `Fixes: #` / `Closes
#` / `Refs #` OR (b) described the issue in-PR following the relevant
issue template
- [x] I have not referenced internal/instance-local Paperclip issues or
links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip`
URLs)
- [x] My branch name describes the change (e.g. `docs/...`, `fix/...`)
and contains no internal Paperclip ticket id or instance-derived details
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [x] All Paperclip CI gates are green
- [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups
- [x] I will address all Greptile and reviewer comments before
requesting merge
---------
Co-authored-by: Paperclip <noreply@paperclip.ing>
## Thinking Path
> - Paperclip is the open source app people use to manage AI agents for
work.
> - GitHub connections give agents an account with selected repository
access.
> - Fresh local instances enroll with production Paperclip Cloud.
> - Enrollment could finish while the GitHub OAuth profile remained
disabled.
> - Setup then switched to a personal access token form without
explanation.
> - This change preserves sign-in intent and shows the connected account
and repositories.
## Linked Issues or Issue Description
Related: #12907, #12943, #12947. Existing open GitHub connection work
was checked. No duplicate was found.
**What happened?**
After Cloud enrollment, a fresh test-drive asked for a GitHub key.
Production did not advertise the managed GitHub profile. Staging did.
The permissions page also omitted the authenticated username and
repository names.
**Expected behavior**
Continue with GitHub OAuth when available. Explain unavailable sign-in
and allow retry otherwise. Show the GitHub username and complete
accessible repository list.
**Steps to reproduce**
Start a fresh test-drive. Choose GitHub and complete instance enrollment
while the Cloud GitHub profile is disabled. Open an existing GitHub
connection's permissions page.
## What Changed
- Preserve managed sign-in intent when the gallery omits its profile.
- Refresh the selected gallery entry on retry without resetting the
audience.
- Fetch all pages of GitHub installations and repositories.
- Store only repository IDs, full names, and installation IDs in grant
metadata.
- Show the GitHub username, repository list, management link, and
refresh action.
- Discard the repository snapshot after newer installation lifecycle
events. Preserve snapshots verified after delayed events.
- Lock and re-read grant metadata when applying installation events or
saving refreshed access. Patch only webhook fields for other events.
Reject snapshots if access changed during the external fetch, using
unique access revisions even when timestamps collide.
- Show repository installation recovery for managed OAuth even when the
app also offers an advanced PAT method.
- Update tests and the GitHub connection runbook. No SQL migration is
required.
## Verification
- Local typecheck, build, and token gates passed. All latest-head CI
gates passed, including the complete test matrix and browser suites.
Greptile is 5/5 with no unresolved findings.
- All 382 focused setup, permissions, metadata, service, and webhook
tests passed across final runs. One socket-hang-up test passed on rerun
with the full service suite. Final service, metadata, and webhook checks
passed all 230 tests.
- The broad local suite was stopped after failures. Seven
workspace-runtime exposure and control-conflict failures reproduce on
base commit `54a99d884`. The broad run also overlapped local iteration;
final focused tests and clean-checkout CI are tracked separately.
- Browser: a fresh production-backed instance completed enrollment,
retried after profile enablement, reached GitHub consent, recovered from
a missing installation, and completed OAuth.
- Browser: the permissions page showed the authenticated username and
the selected private test repository. A real `get_me` call returned the
same account. Reading the selected repository passed; reading an
unselected private repository failed with 404.
- Browser: a second fresh instance completed enrollment and OAuth
without a PAT form or unavailable state. Its username and repository
list survived reload and refresh. A real get_me call on the final code
returned the displayed account.
## Risks
- Repository names are now stored in company-scoped grant metadata and
shown with that credential. They are display data, not authorization
data.
- Large selections require more GitHub API calls. A failed later page
rejects the refresh rather than reporting a partial list.
- Older grants and webhook-invalidated snapshots require Refresh access
to load the list.
- Cloud profile enablement is separate deployment configuration. This PR
does not change OAuth scopes or GitHub App permissions.
## Model Used
OpenAI GPT-6 (`gpt-6-astra`) via Codex. Reasoning, code execution, and
browser tools were used. The exact context window size was not exposed.
## Checklist
- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have searched GitHub for duplicate or related PRs and linked
them above
- [x] I have either (a) linked existing issues with `Fixes: #` / `Closes
#` / `Refs #` OR (b) described the issue in-PR following the relevant
issue template
- [x] I have not referenced internal/instance-local Paperclip issues or
links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip`
URLs)
- [x] My branch name describes the change (e.g. `docs/...`, `fix/...`)
and contains no internal Paperclip ticket id or instance-derived details
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [x] All Paperclip CI gates are green
- [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups
- [x] I will address all Greptile and reviewer comments before
requesting merge
---------
Co-authored-by: Paperclip <noreply@paperclip.ing>
## Thinking Path
> - Paperclip is the open source app people use to manage AI agents for
work.
> - Connections give those agents access to external services.
> - Connection setup first asks who may use the credential.
> - Some providers need a local method selection before OAuth starts.
> - The Access button said it would open GitHub even when it opened
another local step.
> - This pull request names the actual next action and shows the
external arrow only for a provider handoff.
> - Users can distinguish local setup from leaving Paperclip.
## Linked Issues or Issue Description
Refs: #12943
The browser audit found a second, separate clarity problem. GitHub
showed "Continue to GitHub" twice: once to open its local method
selection and once to start OAuth. The first label promised the wrong
action. This change fixes that label without adding or removing a setup
step.
## What Changed
- Use "Continue" when Access opens another local OAuth setup step.
- Keep "Continue to <provider>" and the external arrow when Access
starts OAuth directly.
- Test GitHub defaults, pre-enrollment setup, direct Notion OAuth, and
dialog behavior.
- Document the two GitHub button actions.
- Preserve the external-handoff arrow in the direct-OAuth Storybook
fixture.
## Verification
- Targeted connection tests: 114 passed.
- `pnpm --filter @paperclipai/ui typecheck`: passed.
- `pnpm --filter @paperclipai/ui build`: passed.
- `node scripts/check-token-gates.mjs`: passed.
- `git diff --check`: passed.
- After the Storybook review fix: 100 connection-flow tests, UI
typecheck, token gates, and Storybook build passed; visually confirmed
the Gmail handoff arrow and local GitHub step labels.
- Actual test-drive browser: confirmed default personal identity and Any
agent; clicked Continue to the local method screen; switched PAT and
OAuth; returned to Access with selections intact; cancelled without a
duplicate connection.
- Live OAuth, local MCP identity, and a real staging sandbox task passed
during the audit. This patch does not change those paths.
- Full local suite has known unrelated macOS path/runtime test failures
from the audit. All CI passed on head
`936ce09f4e1faaf09f9fb778c2cd4c65c2a41972`, including typecheck, build,
all test shards, browser tests, and canary dry run. Greptile: 5/5; no
unresolved comments.
## Risks
- Low risk. This changes button text and an icon cue only. There is no
new schema, permission, consent, or credential behavior.
- Providers with multiple methods now say Continue before their method
screen. Direct OAuth providers keep their existing wording.
## Model Used
- OpenAI Codex assisted with code, tests, terminal checks, and actual
browser verification. The runtime does not expose the exact model ID or
context-window size, so those details are unavailable.
## Checklist
- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have searched GitHub for duplicate or related PRs and linked
them above
- [x] I have either (a) linked existing issues with `Fixes: #` /
`Closes: #` / `Refs: #` OR (b) described the issue in-PR following the
relevant issue template
- [x] I have not referenced internal/instance-local Paperclip issues or
links (only public GitHub references)
- [x] My branch name describes the change and contains no internal
Paperclip ticket id or instance-derived details
- [x] I have run tests locally and they pass (targeted tests; full-suite
caveats above)
- [x] I have added or updated tests where applicable
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [x] All Paperclip CI gates are green
- [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups
- [x] I will address all Greptile and reviewer comments before
requesting merge
---------
Co-authored-by: Paperclip <noreply@paperclip.ing>
## Thinking Path
> - Paperclip is the open source app people use to manage AI agents for
work.
> - Managed connections deliver credentials to an approved instance.
> - A self-hosted instance starts with a time-limited approval link.
> - The setup page cached that link and reused it after expiry.
> - This pull request lets the existing server choose a valid enrollment
link.
> - Users can recover without another setup step or a service restart.
## Linked Issues or Issue Description
Related: #12891 (one-time enrollment) and #12907 (sandbox GitHub
identity).
No duplicate open enrollment-recovery PR or issue was found.
**What happened?**
After a pending Cloud enrollment expired, Continue opened the same
expired
approval link. Cloud returned ENROLLMENT_NOT_AVAILABLE. Returning to
setup and
selecting Continue repeated the failure.
**Expected behavior**
Continue must ask the server for a valid enrollment. The server must
reuse a
live pending enrollment and replace an expired one. Existing approved
instances
must not need another approval.
**Steps to reproduce**
1. Start GitHub setup on a fresh self-hosted instance.
2. Start Cloud enrollment but leave it unapproved until the link
expires.
3. Return to step 2 and select Continue.
4. Before this change, the browser opens the expired link again.
**Paperclip version or commit**
Reproduced from master commit 05735b3d87.
**Deployment mode**
Fresh source test-drive instance, connected to staging Cloud.
## What Changed
- Always call the existing enrollment-start endpoint from Continue.
- Retain the server's expiry, pending-enrollment reuse, and concurrency
rules.
- Test both expired and future-dated cached enrollment responses.
- Document recovery from an expired unapproved link.
## Verification
- Five targeted connection suites: 150 tests passed.
- `pnpm check:token-gates`: passed.
- Live browser: reproduced the expired-link loop, then recovered with
this fix.
- Live browser: approved once, returned to step 2, connected GitHub
without a
restart or repeated Cloud approval, and ran GitHub MCP get_me
successfully.
- Separate new managed staging stack: connected without self-hosted
enrollment;
an actual Daytona task verified the responsible user's GitHub identity,
authenticated API access, both token variables, Git helper
configuration,
shallow clone/fetch, and author/committer metadata. No repository
writes.
- Repository-wide typecheck and build passed.
- The full local unit command is not claimed green: macOS temporary-path
fixture failures, Linux `/proc` listener checks, and overlapping local
service-port tests affected the runs. The two isolated workspace-control
and
remote-profile suites pass unchanged with `TMPDIR=/private/tmp` (30
tests).
A further canonical-path run passed 216 of 220 tests; remaining failures
were in the unrelated runtime-exposure suite. Superseded full runs were
stopped after exact-head CI completed successfully.
- Exact-head CI is green: all general and serialized test shards,
typecheck,
build, canary dry run, and all three browser shards passed. Storybook
was
skipped by its normal path filter. Greptile is 5/5 with no findings or
review
threads. The PR is mergeable.
## Risks
- Low risk: one additional local API request before navigation when a
cached
pending URL exists. The request already exists for first enrollment.
- Cloud remains the approval authority. This change does not extend link
expiry, bypass approval, change permissions, or change active
enrollment.
- No schema, Cloud service, dependency, or telemetry changes.
- The first sandbox agent guessed the wrong Paperclip API hostname when
reporting its result. Recovery succeeded with the supplied API URL. A
second
bounded task verified GitHub identity, reported its result, and reached
Done
in 36 seconds without recovery. No service change was needed for that
mistake.
## Model Used
OpenAI Codex. The runtime does not expose the exact model identifier or
context
window to this task. Used reasoning, source editing, shell tests, and
live
browser verification. No model version or window size is inferred.
## Checklist
- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have searched GitHub for duplicate or related PRs and linked
them above
- [x] I have either (a) linked existing issues with `Fixes: #` / `Closes
#` / `Refs #` OR (b) described the issue in-PR following the relevant
issue template
- [x] I have not referenced internal/instance-local Paperclip issues or
links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip`
URLs)
- [x] My branch name describes the change (e.g. `docs/...`, `fix/...`)
and contains no internal Paperclip ticket id or instance-derived details
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [x] All Paperclip CI gates are green
- [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups
- [x] I will address all Greptile and reviewer comments before
requesting merge
Co-authored-by: Paperclip <noreply@paperclip.ing>
## Thinking Path
> - Paperclip is the open source app people use to manage AI agents for
work.
> - The CLI provides a test-drive command for a ready local test
instance.
> - That command must accept a provider credential before it creates the
first agent.
> - The command did not accept a literal key and could lose an exported
key during server startup.
> - This pull request accepts both credential paths and captures the CLI
environment before startup.
> - The benefit is a reliable one-command test drive from an existing
shell.
## Linked Issues or Issue Description
Refs #12894
**What happened?**
`paperclipai test-drive --api-key <value>` failed because the option did
not exist. An exported canonical provider variable could also become
unavailable before the post-listen bootstrap read it.
**Expected behavior**
The command must accept a literal key when the operator requests it. The
command must also use a provider variable that was present when the CLI
started.
**Steps to reproduce**
1. Export `ANTHROPIC_API_KEY` in the shell.
2. Run `pnpm paperclipai test-drive`.
3. Observe that bootstrap can report that no credential exists.
4. Run `pnpm paperclipai test-drive --api-key test-value`.
5. Observe that Commander reports an unknown option on the prior
implementation.
**Paperclip version or commit**
The problem exists on `master` after #12894.
**Deployment mode**
Local development with `pnpm` and the embedded database.
## What Changed
- Add the `--api-key <value>` test-drive option.
- Keep `--api-key` and `--api-key-env` mutually exclusive.
- Capture provider variables before in-process server startup changes
the process environment.
- Redact literal and environment-backed credentials from Paperclip
errors, including custom environment-variable names with surrounding
whitespace.
- Scrub split and joined literal-key forms from the JavaScript
`process.argv` view before telemetry, diagnostics, API work, or server
startup.
- Warn about process argument and shell history exposure without
printing the key.
- Add tests for literal keys, option conflicts, environment snapshots,
argv handling, and error redaction.
- Update the CLI and development documentation, including the remaining
external argv exposure tradeoff.
## Verification
- `pnpm exec vitest run cli/src/__tests__/test-drive.test.ts` passed 32
tests.
- `pnpm -r typecheck` passed.
- `pnpm build` passed.
- A live literal-key smoke test created one company and one CEO agent
without a provider call.
- A live exported-variable smoke test created the same clean instance
without credential flags.
- `pnpm test:run` completed locally with 5,870 passing tests and 19
host-dependent failures in six unrelated suites. The failures came from
macOS `/tmp` aliases, exhausted test ports, and existing
workspace-runtime fixture assumptions.
- GitHub CI passed the full build, typecheck, canary dry run, general
tests, serialized server tests, and e2e matrix on clean Linux runners.
- Greptile rated the exact latest head 5/5, Superagent passed, and all
review threads are resolved.
## Risks
- A raw value passed through `--api-key` can appear in operating-system
process listings, shell history, or parent-wrapper output before
Paperclip can scrub its own JavaScript argv view. The command warns
about this risk and Paperclip does not print the value.
- The environment snapshot contains the process environment only in
memory for the life of the foreground command.
- This change adds no schema migration and no REST endpoint.
> For core feature work, check [`ROADMAP.md`](ROADMAP.md) first and
discuss it in `#dev` before opening the PR. Feature PRs that overlap
with planned core work may need to be redirected — check the roadmap
first. See `CONTRIBUTING.md`.
## Model Used
OpenAI Codex with GPT-5. The exact deployment version and context window
are not exposed to the agent. Extended reasoning, tool use, code
execution, and GitHub access were enabled.
## Checklist
- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have searched GitHub for duplicate or related PRs and linked
them above
- [x] I have either (a) linked existing issues with `Fixes: #` / `Closes
#` / `Refs #` OR (b) described the issue in-PR following the relevant
issue template
- [x] I have not referenced internal/instance-local Paperclip issues or
links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip`
URLs)
- [x] My branch name describes the change (e.g. `docs/...`, `fix/...`)
and contains no internal Paperclip ticket id or instance-derived details
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [x] All Paperclip CI gates are green
- [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups
- [x] I will address all Greptile and reviewer comments before
requesting merge
---------
Co-authored-by: Paperclip <noreply@paperclip.ing>
## Thinking Path
> - Paperclip is the open source app people use to manage AI agents for
work
> - Agents need source control access for repository work
> - A shared token cannot preserve the responsible person's identity or
an agent's dedicated identity
> - GitHub App tokens also need durable refresh, repository access
checks, and webhook delivery
> - Paperclip already has managed connections, encrypted grants, run
secret leases, and merge-confirmation behavior
> - This pull request extends those systems with GitHub identities
instead of adding a parallel credential system
> - The benefit is durable GitHub access with explicit identity,
repository, runtime, and webhook boundaries
## Linked Issues or Issue Description
No public GitHub issue describes this connection change. This
description follows the feature request template.
**Subsystem affected**
Connected Apps, connection grants, secret resolution, native Git runtime
setup, webhook processing, and the Apps UI.
**Problem or motivation**
Users need to connect GitHub once and let agents use the correct GitHub
identity. A run should use a dedicated agent account when one exists.
Otherwise, it should use the responsible person's account. The
connection must survive token expiry, repository access changes, and
temporary instance downtime.
**Proposed solution**
Add user-owned and agent-owned GitHub grants to the existing connection
model. Resolve one identity for MCP, Git, `gh`, health checks, and
webhook bindings. Store provider tokens in the existing encrypted secret
system. Refresh expiring token pairs under the existing lease and
compare-and-swap path. Register signed Cloud webhook bindings and
process normalized pull request and installation events through a
durable local inbox.
**Alternatives considered**
An organization-wide GitHub token would lose person and agent
attribution. Environment variables alone would bypass the managed
connection and grant model. A new GitHub-only credential store would
duplicate the existing secret and access systems. GitHub App
installation tokens and private-key custody remain outside this first
version.
**Roadmap alignment**
This change implements the Connected Apps direction. It also extends the
shipped MCP Tool Gateway, per-agent secret access, and
action-attribution systems. It does not add a repository catalog. The
open repository catalog work in
[#11234](https://github.com/paperclipai/paperclip/pull/11234) is related
and complementary.
## What Changed
- Added agent-owned connection grants and a per-agent credential policy
with company and subject constraints.
- Added a managed GitHub App method while keeping the personal access
token method as an advanced fallback.
- Added durable access-token and refresh-token handling with proactive
rotation and one automatic recovery after a provider `401`.
- Added GitHub identity and installation summaries without storing
repository-name lists.
- Added signed Cloud webhook binding, event lease, acknowledgement,
local idempotency, pull request merge processing, and installation
access handling.
- Added one identity resolver for MCP, native Git, `gh`, checkout,
health checks, and webhook bindings.
- Added a class-3 run projection for `GH_TOKEN`, `GITHUB_TOKEN`, a
`github.com`-only credential helper, SSH-to-HTTPS rewrite, and GitHub
noreply commit attribution.
- Added personal and dedicated-agent setup choices plus identity,
repository, continuity, and webhook status in the Apps UI.
- Added schema migrations, tests, and connection documentation.
## Verification
- The current head is fully green in GitHub CI, including build,
typecheck, all serialized/general server shards, all browser shards,
policy, canary dry run, review, and security checks.
- Live staging proof completed with a non-expiring GitHub App user
token, selected-repository installation, repository add/remove refresh,
managed MCP, native `gh`, HTTPS clone/push/delete, GitHub noreply commit
attribution, signed merged-PR webhook acceptance, durable
Cloud-to-instance delivery, and installation-access event processing.
Temporary branches and temporary repository access were removed
afterward.
- `pnpm check:token-gates` passed.
- `pnpm -r typecheck` passed before and after the rebase onto
`origin/master`.
- `pnpm build` passed.
- The focused connector suite passed 285 tests after the rebase.
- The full stable suite passed 5,790 tests and failed 22 tests across 8
general server files. The failures reproduced as shared-runner
environment issues. They included `/tmp` versus `/private/tmp`, closed
database connections, and invalid high ephemeral ports. The focused
connection tests pass in isolation.
## Risks
- Migrations add agent grant subjects and a durable connection-event
inbox. Migration numbering and safety checks pass.
- A raw GitHub user token enters the agent process for Git and `gh`.
Per-tool Ask-first controls cannot limit those shell operations. The UI
warns users about this boundary.
- GitHub App user tokens can be non-expiring. Paperclip performs a
continuity check every 30 days, but provider revocation still requires a
reconnect.
- The webhook path accepts only signed and bounded payloads. It stores a
minimal normalized record and no raw provider payload.
- GitHub repository permissions remain authoritative. Removed access can
make a cached repository count temporarily stale, but runtime access
fails immediately.
> For core feature work, check [`ROADMAP.md`](ROADMAP.md) first and
discuss it in `#dev` before opening the PR. Feature PRs that overlap
with planned core work may need to be redirected — check the roadmap
first. See `CONTRIBUTING.md`.
## Model Used
OpenAI Codex, `gpt-5.6-sol`, extended reasoning, tool use, code
execution, browser control, and multi-file repository editing. The
context window size was not provided.
## Checklist
- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have searched GitHub for duplicate or related PRs and linked
them above
- [x] I have either (a) linked existing issues with `Fixes: #` / `Closes
#` / `Refs #` OR (b) described the issue in-PR following the relevant
issue template
- [x] I have not referenced internal/instance-local Paperclip issues or
links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip`
URLs)
- [x] My branch name describes the change (e.g. `docs/...`, `fix/...`)
and contains no internal Paperclip ticket id or instance-derived details
- [ ] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [x] All Paperclip CI gates are green
- [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups
- [x] I will address all Greptile and reviewer comments before
requesting merge
---------
Co-authored-by: Paperclip <noreply@paperclip.ing>
