27 Commits

Include renames

Author	SHA1	Message	Date
DottaandPaperclip	5bddff0920	feat(runner): add guarded API search and call fallback (#13003) ... ## Thinking Path > - Paperclip manages AI agents and their work. > - The new runner gives agents dedicated tools for common tasks. > - Some API operations and parameters have no dedicated tool. > - Agents need a controlled way to find and use those operations. > - This pull request adds API search and calls through the real server routes. > - Existing tools remain the preferred path. The new tools are disabled by default. > - Paired tests measure correctness, tool choice, cost and time. ## Linked Issues or Issue Description **Subsystem affected** Paperclip Runner contracts, production tool authority and the server API catalog. **Problem or motivation** The runner cannot use much of the API described by the old Paperclip skill. A generic HTTP client would also let agents bypass runner control rules. **Proposed solution** Add `search_api` and `call_api`. Resolve calls from the mounted API catalog. Use server-held, run-bound credentials. Preserve route checks and runner lifecycle rules. Keep the tools disabled until an operator enables selected companies. **Alternatives considered** A dedicated tool for every endpoint would add a large initial prompt. An unrestricted HTTP tool would weaken authorization and replay controls. **Roadmap alignment** This extends the native runner tooling. The repository owner requested this design and implementation. The roadmap and related open PRs were checked. No duplicate API escape-hatch PR was found. ## What Changed - Register two compact fallback tools in canonical contracts and provider projections. - Build deterministic API discovery from OpenAPI, mounted experimental routes and the old skill reference. - Execute bounded JSON, text, file and download requests through authenticated HTTP routes. - Recheck active runs, company access and work modes. Block runner lifecycle, scheduling, credential and approval bypasses. Keep routine annotation collaboration available. - Retain mutation receipts. Report uncertain outcomes without blindly repeating writes. - Add a company rollout gate and a durable eval worker with complete cost accounting checks. - Record child-task creation in the activity log with the agent and run. - Add contract, authorization, file, replay and real runnerd/PRP/HTTP tests. - Document rollout gates and paid coverage limits. The companion eval repository retains immutable attempts and reports. ## Verification - Final app commit `da58370524c3626a744eec20164397c5fb6ba9ef`: all 32 checks passed; the unrelated Storybook visual check was skipped. Greptile 5/5; no unresolved review threads. - Full Linux build and recursive typecheck passed. Repository tests were run by project and serialized shard; all 143 serialized server suites passed. - Runner TypeScript: 1,599 passed, two skipped. Rust release: 451 passing test reports. Conformance and replay parity passed. The required API check passed 837 tests, including runnerd → PRP → authority → real HTTP. - Bindings cannot enable API tools without the explicit deployment flag. Unit and real-authority tests prove the default-off boundary. - The standalone API check builds and stages its own binary. It passed after existing staged and debug binaries were removed from the test container. - UI and CLI tests passed. Initial environment failures (missing jq, Docker overlay file identity, and parallel linker memory pressure) and focused passing reruns are retained. The macOS full runner suite has platform-specific failures; Linux is the qualified full-check platform. - Eval harness: 27 tests passed; existing CI discovery ran 86 tests with two unrelated skips. Credential export rejection is tested against the actual report command. - Luna and OpenRouter Sonnet each passed 60 common-workflow runs: ten workflows, three repetitions per arm, zero unnecessary API fallback. - Sonnet passed 11 selected capability/contract cases after fixes. Gemini passed three smoke cases. DeepSeek exceeded the 120-second limit and remains unqualified. - Luna's two cost flags received focused follow-up. The original flags and a later n=1 latency flag remain visible. Sonnet had no cost or latency increase above 20%. - The catalog contains 785 entries; 58 were exercised across all stages. Most operation probes remain unrun and some need additional fixtures. Authored probes do not establish successful coverage. - Total conservative accounted cost: $9.875960. Active paid-campaign time: 88.16/90 minutes. No missing accounting. Later security and harness fixes have provider-free verification; no paid validation is claimed for those revisions. - Inspect the [qualification report](https://github.com/paperclipai/paperclip-evals/blob/codex/seach-call-api-tools/evals/runner-api-tools/reports/2026-09-07-production/READINESS.md) and [verification record](https://github.com/paperclipai/paperclip-evals/blob/codex/seach-call-api-tools/evals/runner-api-tools/reports/2026-09-07-production/verification.json). ## Risks - This is a broad authenticated API surface. Keep the default-off gate until an operator selects initial rollout companies. - Paid coverage is incomplete. Small regression samples do not prove all workflows are unchanged. - A timeout or server failure can follow a committed mutation. The result reports an unknown outcome and requires state inspection. - The new definitions add prompt tokens. The report retains cost flags and cache variation. - No database migration is required. - Repository rules require code-owner approval before merge. Technical CI and automated review are complete. ## Model Used OpenAI Codex based on GPT-6 assisted with code, tests and review. The exact serving model ID and context window are not exposed in this session. It used reasoning, tool calls and code execution. Eval models: `gpt-5.6-luna` with low reasoning, `openrouter/anthropic/claude-sonnet-5`, `openrouter/google/gemini-3.8-flash`, and `openrouter/deepseek/deepseek-v4-flash-0731`. Attempts retain runtime versions, model identity, usage and source provenance. ## Checklist - [x] I have included a thinking path that traces from project context to this change - [x] I have specified the model used (with version and capability details) - [x] I have checked ROADMAP.md and confirmed this PR does not duplicate planned core work - [x] I have searched GitHub for duplicate or related PRs and linked them above - [x] I have either (a) linked existing issues with `Fixes: #` / `Closes #` / `Refs #` OR (b) described the issue in-PR following the relevant issue template - [x] I have not referenced internal/instance-local Paperclip issues or links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip` URLs) - [x] My branch name describes the change (e.g. `docs/...`, `fix/...`) and contains no internal Paperclip ticket id or instance-derived details - [x] I have run tests locally and they pass - [x] I have added or updated tests where applicable - [x] I have updated relevant documentation to reflect my changes - [x] I have considered and documented any risks above - [x] All Paperclip CI gates are green - [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups - [x] I will address all Greptile and reviewer comments before requesting merge --------- Co-authored-by: Paperclip <noreply@paperclip.ing>	2026-09-07 14:14:43 -05:00
DottaandPaperclip	f6a211479f	fix: share current CLI runtimes across sandbox adapters (#12994) ... ## Thinking Path - Paperclip Runner needs its runtime preinstalled for fast sandbox startup. - Native and local adapters should launch one current CLI installation per provider. - An older global copy can shadow that installation, and exact native compatibility pins must match it. - Update the qualified releases and binary digests, expose shared CLI entrypoints from the provider pack, and prefer the image-owned bin directory. - Keep dependency installation in the image build; task startup only discovers, links, and verifies artifacts. ## Linked Issues or Issue Description **What happened?** Remote native startup rejected a stale global Codex, while CLI-only images lacked runnerd entirely. **Expected behavior** An image-baked runtime starts without uploading binaries or installing packages. All adapters share the same current provider CLI. **Steps to reproduce** Start a native remote task with the old global Codex and the updated runtime available only under `/opt/paperclip-runner/bin`. **Paperclip version or commit** Discovery behavior at `54a99d884`. **Deployment mode** Docker with a remote sandbox. ## What Changed - Prefer `/opt/paperclip-runner/bin`, then the user's local bin directory, then PATH. Existing metadata and version validation remains in force. - Qualify Codex 0.153.4, OpenCode 1.18.29, and Claude SDK 0.3.263 / CLI 2.1.263. Update binary digests, TypeScript/Rust checks, registry defaults, and the displayed OpenCode version together. - Share Codex and Claude's native executable with the ACP bridges through exact dependency overrides. Preserve the separately qualified ACP bridge implementations and their security patches. - Expose shared provider-pack CLI launchers; fail the pack build if Codex ACP resolves a separate Codex installation. Update the eval image's other agent CLIs to current stable releases and remove duplicate global provider installs. - Document the single-current-CLI policy in source comments and development guidance. Latest stable releases are resolved at review/build preparation and pinned; task startup never auto-updates. ## Verification - Native-session and adapter-registry suites: 158 tests passed. - Provider suites: 88 tests passed, 7 Linux-only checks skipped on macOS. One existing macOS temporary-path alias assertion passed when rerun with canonical `TMPDIR=/private/tmp`. - Package-contract and OpenCode materialization tests: 11 passed. - Full typecheck, build, and token gates passed. Rust native-provider/recovery tests: 19 passed. - Broad local suite: 5,974 passed, 23 failed, 41 skipped. Failures are in unchanged macOS workspace/path/port and connection suites; focused runtime tests pass. All latest-head Linux PR checks passed, including the full test shards, typecheck, build, runner verification, browser suites, and canary dry run. - The standalone fleet image built with one current provider CLI each and passed native Codex/Claude binary-integrity checks. A disposable Daytona sandbox reported ready in 798 ms; its baked runner completed an API-key `gpt-5.6-luna` turn in 2,430 ms and returned the expected marker with a usage receipt. No runtime artifacts were uploaded or installed. - The normal shared `codex exec` entrypoint also completed an API-key `gpt-5.6-luna` turn in 2,321 ms. - Both image builds verify the complete generated lockfile against a reviewed SHA-256 before package installation or lifecycle execution. Root lockfile changes remain CI-owned. Merge and rollout remain on hold for operator review. ## Risks - Updating provider CLIs changes their behavior for all adapters; version probes and live native smoke testing are required before image promotion. - The image-owned directory takes precedence. Its entries must launch the same shared CLI as the global PATH, not a private older/newer copy. - Application qualification pins and the deployed image must move together. No startup fallback installation is added. - No schema or authentication-policy changes. ## Model Used OpenAI GPT-6 (Codex). The session does not expose a more specific model ID or context-window size. Used reasoning, repository inspection, code execution, and browser verification. ## Checklist - [x] I have included a thinking path that traces from project context to this change - [x] I have specified the model used (with version and capability details) - [x] I have checked ROADMAP.md and confirmed this PR does not duplicate planned core work - [x] I have searched GitHub for duplicate or related PRs and linked them above - [x] I have either (a) linked existing issues with `Fixes: #` / `Closes #` / `Refs #` OR (b) described the issue in-PR following the relevant issue template - [x] I have not referenced internal/instance-local Paperclip issues or links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip` URLs) - [x] My branch name describes the change (e.g. `docs/...`, `fix/...`) and contains no internal Paperclip ticket id or instance-derived details - [x] I have run tests locally and they pass - [x] I have added or updated tests where applicable - [x] I have updated relevant documentation to reflect my changes - [x] I have considered and documented any risks above - [x] All Paperclip CI gates are green - [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups - [x] I will address all Greptile and reviewer comments before requesting merge --------- Co-authored-by: Paperclip <noreply@paperclip.ing>	2026-09-07 10:09:29 -05:00
DottaandPaperclip	fee8d8dc39	fix(runner): repair direct live provider bootstrap (#12932) ... ## Thinking Path > - Paperclip runs AI agents through qualified provider backends. > - The direct live eval workflow builds one immutable Runner runtime for every matrix cell. > - The workflow reinstalled the packed Runner with npm. > - That install discarded pnpm patches and selected provider dependencies outside the qualified lock. > - The first pnpm deployment model also placed its virtual-store marker at the wrong level; a real deployment keeps `.pnpm` beside the scoped Runner package. > - AgentCore enforced the current context-aware harness but the direct eval CLI did not supply the production v3 runtime context that harness requires. > - This pull request preserves the qualified dependency graph, resolves the real deployment layout, and makes direct evals exercise the production runtime-context contract. > - The benefit is that live eval cells reach their provider turn with the same artifacts and context contract that Paperclip qualified. ## Linked Issues or Issue Description Refs: #12931 **What happened?** The full direct live eval campaign failed every ACPX cell during `session.open`. The portable runtime had an incorrect dependency root. Its npm install also discarded the qualified ACP server patches. AgentCore cells first failed because Runner enforced `aws-agentcore-harness-v1` while the provisioned stack and eval profile use `aws-agentcore-harness-context-v2`; after aligning that revision, the direct eval CLI still omitted the required v3 runtime context. **Expected behavior** The direct eval runtime must preserve the frozen pnpm dependency graph and patched provider bytes. Runner, server validation, OpenAPI, and the deployed AgentCore stack must use one qualification revision. Direct eval attempts must supply the same immutable native runtime-context contract as production. **Steps to reproduce** 1. Dispatch `Runner Direct Live Protocol Evals` from `master`. 2. Select an ACPX Claude, ACPX Codex, or AgentCore roster. 3. Observe a pre-turn provider bootstrap failure. **Paperclip version or commit** `d96452db059338b329b458ba8fe359fef72f1363` **Deployment mode** GitHub Actions on the RunsOn Linux x64 fleet. ## What Changed - Build the reusable direct-eval runtime with `pnpm deploy --prod`. - Resolve ACPX dependencies from the actual scoped-package layout of a self-contained pnpm deployment. - Align AgentCore configuration and qualification checks on `aws-agentcore-harness-context-v2`. - Materialize a minimal immutable v3 runtime context for each isolated direct eval attempt. - Add workflow, package-authority, runtime-context, Rust, and server regression coverage. - Document the qualified packaging, runtime-context, and AgentCore revision contracts. ## Verification - `pnpm --filter @paperclipai/paperclip-runner typecheck` - `pnpm --filter @paperclipai/server typecheck` - `pnpm --filter @paperclipai/paperclip-runner exec vitest run src/live/runnerd-codex-transport.test.ts` (70 tests) - `pnpm --filter @paperclipai/paperclip-runner exec vitest run src/cli/eval-session-contract.test.ts` (14 tests) - Focused Runner contract tests (36 tests) - Focused server profile tests (47 tests) - Focused Rust managed-provider and native-selector tests (19 tests) - `node --test packages/paperclip-runner/scripts/runner-protocol-eval-workflow-security.test.mjs` - `actionlint .github/workflows/runner-protocol-live-evals.yml` - A local `pnpm deploy --prod` produced both qualified ACP server digests. - A Linux reproduction of the first follow-up smoke identified the real deployment root and the missing AgentCore runtime context. ## Risks The AgentCore revision change rejects profiles that still use the obsolete v1 value. This is intentional because the provisioned context-aware harness and current eval profile use v2. Direct eval prompts now receive the same fixed runtime-context preamble as production, so behavior scores may move; that is the intended qualification surface. The workflow package layout changes, but tests assert the new entrypoint and dependency root. This change does not modify the browser full-stack E2E workflow. > For core feature work, check [`ROADMAP.md`](ROADMAP.md) first and discuss it in `#dev` before opening the PR. Feature PRs that overlap with planned core work may need to be redirected. See `CONTRIBUTING.md`. ## Model Used OpenAI Codex with GPT-5.6. The context-window size is not exposed in this session. The model used extended reasoning, repository tools, code execution, Docker-based Linux reproduction, and GitHub Actions diagnostics. ## Checklist - [x] I have included a thinking path that traces from project context to this change - [x] I have specified the model used (with version and capability details) - [x] I have checked ROADMAP.md and confirmed this PR does not duplicate planned core work - [x] I have searched GitHub for duplicate or related PRs and linked them above - [x] I have either (a) linked existing issues with `Fixes: #` / `Closes #` / `Refs #` OR (b) described the issue in-PR following the relevant issue template - [x] I have not referenced internal/instance-local Paperclip issues or links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip` URLs) - [x] My branch name describes the change (for example, `docs/...` or `fix/...`) and contains no internal Paperclip ticket id or instance-derived details - [x] I have run tests locally and they pass - [x] I have added or updated tests where applicable - [x] I have updated relevant documentation to reflect my changes - [x] I have considered and documented any risks above - [ ] All Paperclip CI gates are green - [ ] Greptile is 5/5 with no open P2s, recommendations, or follow-ups - [x] I will address all Greptile and reviewer comments before requesting merge --------- Co-authored-by: Paperclip <noreply@paperclip.ing>	2026-09-06 15:45:07 -05:00
Dotta	0c1e7504c0	fix(runner): persist warm Daytona workspaces across turns (#12904) ... ## Thinking Path > - Daytona preserves a stopped sandbox filesystem, but deleting or replacing a sandbox removes its only remote copy. > - Warm reuse therefore improves latency but cannot be Paperclip's durability boundary. > - The host execution workspace must remain authoritative after every successful turn, while same-run recovery must avoid overwriting unexported remote work. > - Result proposal, workspace export/merge, and terminal completion need a durable, replayable ordering so a crash never starts a duplicate provider turn. > - A paid browser acceptance suite must exercise both legacy Codex and Runner Codex for three real turns on one continuously warm Daytona sandbox. ## Linked Issues or Issue Description Refs #12901. Runner Codex did not previously export successful Daytona workspace changes back to the authoritative host workspace. That made warm reuse depend on Daytona's remote filesystem and left deleted/replacement sandboxes without a reliable reconstruction path. The existing paid fixture also lacked a focused three-turn continuity case for both Codex adapters. ## What Changed - Persist versioned, atomic native workspace-sync descriptors and durable seeds in `PAPERCLIP_HOME`, without credentials or a database migration. - Classify fresh, warm, replacement, and same-run-recovery workspace preparation explicitly; ambiguous lease/root/digest evidence fails closed. - Finalize native workspace export/merge after semantic result proposal and before run completion, with idempotent replay that never submits a second provider turn. - Surface legacy Codex workspace restoration failures instead of masking them, while preserving an earlier provider error when both fail. - Keep healthy reusable Daytona leases warm for legacy and native adapters, stamp finalized workspace generations, and retain existing cleanup behavior for per-turn or unhealthy leases. - Preserve Runner Codex's provider process/session across warm turns, including bounded post-terminal tail draining and exact authority rotation. - Add the exact paid `daytona-warm-continuity` matrix: - `legacy-codex × daytona × warm-three-turn` - `runner-codex × daytona × warm-three-turn` - Drive all three turns through the browser, verify ordered file continuity and stable lease/workspace/runtime identities, capture per-turn timings, and delete the sandbox immediately after assertions. - Document `pnpm test:e2e:runner -- --suite daytona-warm-continuity`; no package script was added. ## Verification - `pnpm typecheck` — passed, including migration safety (no migration added) - Focused server/runner Vitest coverage — 144 passed - `pnpm test:e2e:runner:unit` — 114 passed - `pnpm test:e2e:runner:typecheck` — passed - `pnpm --filter @paperclipai/paperclip-runner test:codex` — 66 passed, 1 helper ignored - `native-session-executor.test.ts` — 139 passed, including safe fail-closed cleanup after remote runner identity capture failure - Paid local browser acceptance, exact post-rebase Linux/amd64 runner binary: - Runner Codex — passed in 1.7m; 3 runs; lease outcomes `created, resumed, resumed`; 10/10 matchers; cleanup passed - Legacy Codex — passed in 2.7m; 3 runs; lease outcomes `created, resumed, resumed`; 10/10 matchers; cleanup passed - [Protected paid GitHub Actions campaign](https://github.com/paperclipai/paperclip/actions/runs/34026735033) against `7da42a91b95fa7fb2df126668ef7e37afb3b2b9d` — passed 2/2: - Runner Codex — 3 runs; lease outcomes `created, resumed, resumed`; evidence and cleanup passed - Legacy Codex — 3 runs; lease outcomes `created, resumed, resumed`; evidence and cleanup passed - Merge/enforcement, S3 history, and Pages publication jobs passed - Paid result artifacts were scanned for both provider credentials; neither secret was present. - Current PR checks — 31 passed, 1 expected Storybook skip; Greptile 5/5; Superagent security scan passed - `git diff --check origin/master...HEAD` — passed - Confirmed no `package.json`, lockfile, migration, or SQL changes. ## Risks - Workspace synchronization now sits on the terminal-success path, so a remote export failure deliberately prevents false success. Retryable state retains its lease/seed; loss of the only unexported remote copy fails closed. - Warm provider reuse has strict identity and quiescence checks. Mismatched or ambiguous evidence blocks reuse rather than risking concurrent provider work. - The paid suite incurs Daytona and Codex cost only in the existing protected scheduled/manual workflow and explicitly destroys its sandbox after each cell. ## Model Used OpenAI Codex with GPT-5 agentic reasoning, repository inspection, real browser E2E execution, Rust/TypeScript test execution, and GitHub Actions diagnostics. ## Checklist - [x] I have included a thinking path that traces from project context to this change - [x] I have specified the model used (with version and capability details) - [x] I have checked ROADMAP.md and confirmed this PR does not duplicate planned core work - [x] I have searched GitHub for duplicate or related PRs and linked them above - [x] I have either linked an existing issue or described the issue in-PR - [x] I have not referenced internal/instance-local Paperclip issues or links - [x] My branch name contains no internal ticket id - [x] I have run tests locally and they pass - [x] I have added or updated tests where applicable - [x] I have documented the dedicated suite invocation without adding a package script - [x] I have considered and documented risks above - [x] All Paperclip CI gates are green on the current revision - [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups on the current revision - [x] I will address all reviewer comments before requesting merge	2026-09-06 08:16:12 -05:00
DottaandPaperclip	3796c6f259	fix(connections): project GitHub identity into sandbox runners (#12907) ... ## Thinking Path > - Paperclip is the open source app people use to manage AI agents for work. > - Managed GitHub connections resolve a responsible user's or dedicated agent's identity into an audited, run-scoped credential projection. > - An enrolled instance could retain a hidden managed setup method after Cloud stopped advertising it, producing a blank, disabled setup step. > - Native runner processes also dropped the resolved GitHub projection before the provider shell, so `gh` and Git could not use the selected identity in Daytona. > - Daytona already provides the outer isolation boundary. Applying Codex's inner Linux sandbox there both duplicated containment and failed because nested user namespaces are unavailable. > - This change repairs setup fallback, carries only the bounded GitHub projection across each runner boundary, and allows only a controller-selected managed sandbox transport to act as the outer sandbox. ## Linked Issues or Issue Description **What happened?** An enrolled self-hosted instance could show a blank GitHub setup step when its managed profile was unavailable. Separately, a native Codex run in Daytona could resolve a managed GitHub connection on the Paperclip host but lose it before the provider shell. Once projected, Codex's nested sandbox failed before commands could run because Daytona does not expose the user-namespace operation used by the inner sandbox. **Expected behavior** Setup must select an advertised customer method when the managed method is unavailable. A Daytona run must receive the exact managed GitHub identity selected for that run, support `gh` and HTTPS Git, and rely on Daytona as its outer sandbox without weakening local or SSH execution. **Steps to reproduce** 1. Enroll a self-hosted instance while Cloud does not advertise the managed GitHub profile and open GitHub setup. 2. Observe the blank second step and disabled action. 3. Configure a native Codex agent with a Daytona environment and a responsible-user GitHub grant. 4. Run `gh api user` or HTTPS Git from the agent shell. 5. Observe missing GitHub environment projection or nested-sandbox startup failure. **Paperclip version or commit** The setup bug reproduces on `1dceee9a4`; the runner proof was developed from the same branch and verified at the latest head below. **Deployment mode** Self-hosted Paperclip enrolled with Paperclip Cloud, using the Daytona sandbox-provider plugin and native Paperclip runner. ## What Changed - Wait for connector enrollment hydration, retain a hidden managed method only while enrollment is needed, and otherwise select an advertised customer fallback. - Add a single bounded GitHub credential-environment projection for `GH_TOKEN`, `GITHUB_TOKEN`, the process-only Git helper token, GitHub commit identity, and at most 32 controller-generated Git config entries. - Forward that projection through the durable controller, Codex app-server transport, and Rust provider child without placing token values in arguments or config. - Allow Codex shell inheritance only for the exact projected GitHub keys and enable provider network access only when the managed credential exists. - Derive outer-sandbox authority exclusively from a managed `sandbox` transport; strip the same flag from configured, host, local, and SSH environments. - Define a named external-sandbox permission profile that Codex resolves to `dangerFullAccess` for default-mode Daytona turns while plan mode remains read-only. - Add regression tests for setup fallback, credential projection, local/SSH/sandbox authority separation, provider forwarding, and permission-profile selection. ## Verification - `pnpm exec vitest run ui/src/pages/apps/AppsConnect.test.tsx` — 96 passed. - `pnpm exec vitest run src/drivers/codex/codex-security-config.test.ts src/drivers/codex/app-server-transport.test.ts src/control-plane/durable-prp-control-plane.test.ts` from `packages/paperclip-runner` — 31 passed. - Focused native-session executor tests — 3 passed. - `pnpm --filter @paperclipai/paperclip-runner typecheck` — passed. - `pnpm --filter @paperclipai/server typecheck` — passed. - `cargo test --manifest-path packages/paperclip-runner/runner/Cargo.toml --locked -p paperclip-runner-core --lib` — 194 passed. - Real Codex app-server configuration probe accepted `paperclip-runner-external-sandbox` and reported `sandbox.type=\"dangerFullAccess\"` while using the named profile. - [Signed Daytona image workflow](https://github.com/paperclipai/paperclip/actions/runs/33995270328) built commit `86571f7997e7100e47bd131aac1f1e773112a0ce`; the isolated environment was pinned to `sha256:ecef21105f8de382d75787e59439d936be239b77ae74a31c8ed3a17cde39b023`. - Live isolated Daytona proof passed: the three projected token variables were non-empty and equal; the host-scoped Git credential helper returned the same token without printing it; `gh api user` resolved `cryppadotta`; authenticated `git ls-remote https://github.com/paperclipai/paperclip.git HEAD` returned `1dceee9a4e75b13456760bb54c752deb2dba1d79`; no repository mutation occurred. - The persisted 28,476-byte run log contains no GitHub token shape, bearer header, credential-bearing URL, or private-key marker. - Latest-head pull-request CI and reviews provide the remaining full-suite gate. ## Risks - This deliberately gives shell Git and `gh` access to the run's resolved GitHub identity. It is the audited class-3 behavior required by the GitHub connection design and is outside per-tool Ask-first controls. - The credential source is the trusted broker projection, which overwrites configured environment values. The helper is scoped to HTTPS `github.com`, revalidates protocol and host, and never places its token in command arguments, URLs, or files. - Managed Daytona sandboxes become the containment boundary for default-mode provider commands. Local and SSH targets retain the inner Codex workspace sandbox, and plan mode remains read-only everywhere. > For core feature work, check [`ROADMAP.md`](ROADMAP.md) first and discuss it in `#dev` before opening the PR. Feature PRs that overlap with planned core work may need to be redirected — check the roadmap first. See `CONTRIBUTING.md`. ## Model Used - OpenAI Codex, GPT-5, with reasoning, browser control, shell access, and code execution. The product did not expose the context-window size. ## Checklist - [x] I have included a thinking path that traces from project context to this change - [x] I have specified the model used (with version and capability details) - [x] I have checked ROADMAP.md and confirmed this PR does not duplicate planned core work - [x] I have searched GitHub for duplicate or related PRs and linked them above - [x] I have either (a) linked existing issues with `Fixes: #` / `Closes #` / `Refs #` OR (b) described the issue in-PR following the relevant issue template - [x] I have not referenced internal/instance-local Paperclip issues or links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip` URLs) - [x] My branch name describes the change (e.g. `docs/...`, `fix/...`) and contains no internal Paperclip ticket id or instance-derived details - [x] I have run tests locally and they pass - [x] I have added or updated tests where applicable - [x] I have updated relevant documentation to reflect my changes - [x] I have considered and documented any risks above - [x] All Paperclip CI gates are green - [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups - [x] I will address all Greptile and reviewer comments before requesting merge --------- Co-authored-by: Paperclip <noreply@paperclip.ing>	2026-09-05 17:35:21 -05:00
Dotta	1dceee9a4e	fix(runner): persist warm Daytona workspaces (#12901) ... ## Thinking Path > - Paperclip manages AI agent work and the execution state for each task. > - Remote agents run in sandbox environments such as Daytona. > - Daytona keeps files while a sandbox is stopped, but deletion removes those files. > - Runner Codex did not copy successful remote workspace changes back to the host workspace. > - A warm sandbox could therefore hide data loss until Daytona replaced or deleted the sandbox. > - This pull request makes the host workspace durable after every successful turn and keeps verified reusable sandboxes warm. > - The benefit is reliable multi-turn work across warm reuse, restart, stop, and sandbox replacement. ## Linked Issues or Issue Description **What happened?** A successful native Codex turn in Daytona could leave workspace changes only in the remote sandbox. A later warm turn appeared to work because it reused that filesystem. A replacement sandbox could start from stale host data and lose the successful changes. **Expected behavior** Paperclip must merge each successful remote turn into the authoritative host workspace before it completes the run. A verified warm lease may reuse its remote files. A replacement lease must reconstruct the exact durable workspace seed. **Steps to reproduce** 1. Run Codex in a reusable Daytona environment. 2. Write a file during one successful turn. 3. Replace the Daytona sandbox before the next turn. 4. Observe that the next turn can start without the prior file on the unpatched code. Related remote workspace foundation: #10070. ## What Changed - Added explicit `host_current`, `durable_seed`, and `adopt_remote` workspace preparation modes. - Added atomic, versioned native workspace descriptors and seed archives under `PAPERCLIP_HOME`. - Added real native sandbox export and three-way host merge before terminal result completion. - Added workspace-only recovery after a proposed result. Recovery does not submit another provider turn or consume the provider retry budget. - Added fail-closed handling when a sandbox with unexported changes is gone. - Kept healthy reusable Daytona sandboxes started for legacy Codex and Runner Codex. - Kept the Runner Codex process and provider session across verified warm turns. - Added the paid `daytona-warm-continuity` browser suite. It contains exactly the legacy Codex and Runner Codex cells. Each cell performs three measured turns. - Documented `pnpm test:e2e:runner -- --suite daytona-warm-continuity`. No package script was added. - Added no database migration. The metadata format is backward compatible and idempotent. ## Verification - `pnpm typecheck` - `pnpm test:e2e:runner:unit` — 114 passed - Native workspace, finalizer, session, and environment tests — 232 passed - Daytona provider tests — 150 passed - Workspace staging and merge tests — 98 passed - Runner transport tests — 63 passed - Legacy Codex restore tests — 5 passed - Rust format and compile checks pass through root typecheck - The paid Daytona suite was not run locally because the required Daytona, OpenAI, and immutable image credentials are not present. ## Risks - The main risk is an incorrect workspace identity or merge after a crash. Durable descriptors bind the run, workspace, lease, provider lease, local root, remote root, and baseline digest. Ambiguous evidence fails closed. - The host merge may conflict with concurrent host edits. The existing three-way merge and exclusion rules handle this case and surface failures. - A deleted sandbox cannot recover unexported bytes. Paperclip now blocks with `workspace_sync_out_unrecoverable` instead of reporting success or rerunning the provider. - There is no database migration. Descriptor writes and recovery are atomic and idempotent. ## Model Used OpenAI Codex with GPT-5. The run used agentic reasoning, repository inspection, code execution, test execution, Git, and GitHub CLI tools. ## Checklist - [x] I have included a thinking path that traces from project context to this change - [x] I have specified the model used (with version and capability details) - [x] I have checked ROADMAP.md and confirmed this PR does not duplicate planned core work - [x] I have searched GitHub for duplicate or related PRs and linked them above - [x] I have either (a) linked existing issues with `Fixes: #` / `Closes #` / `Refs #` OR (b) described the issue in-PR following the relevant issue template - [x] I have not referenced internal/instance-local Paperclip issues or links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip` URLs) - [x] My branch name describes the change (e.g. `docs/...`, `fix/...`) and contains no internal Paperclip ticket id or instance-derived details - [x] I have run tests locally and they pass - [x] I have added or updated tests where applicable - [x] I have updated relevant documentation to reflect my changes - [x] I have considered and documented any risks above - [x] All Paperclip CI gates are green - [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups - [x] I will address all Greptile and reviewer comments before requesting merge	2026-09-05 13:00:57 -05:00
Dotta	bcc6fe7a44	fix(runner): restore multi-turn remote sessions (#12840) ... ## Thinking Path > - Paperclip manages AI agents and their work. > - The runner executes agent turns on local and remote providers. > - A remote per-turn session must save its state before Paperclip releases its sandbox. > - The session runtime returned after 100 milliseconds while the remote checkpoint still ran. > - The next turn also checked the local state path instead of the verified remote backup. > - This pull request waits for the bounded remote close and accepts only a verified suspended backup. > - The benefit is reliable multi-turn execution without weaker identity checks. ## Linked Issues or Issue Description **What happened?** A successful remote agent turn released its sandbox before the runner saved the verified continuation backup. The next turn failed with `runner_state_identity_mismatch`. **Expected behavior** Paperclip must finish the bounded remote checkpoint before it releases the sandbox. A later turn must validate and restore the digest-matched suspended backup. **Steps to reproduce** 1. Run a native ACPX Claude Plan test in a non-reusable Daytona sandbox. 2. Reject the first plan to start a second turn. 3. Observe that the second turn fails before provider execution. **Paperclip version or commit** The failure reproduced at `13775a90b078ff64872f50961ea1b83d575e7bc6`. **Deployment mode** GitHub Actions with a Daytona sandbox. ## What Changed - Wait for the internally bounded remote runner close and checkpoint before the host returns. - Preserve the existing short cleanup bound for other providers. - Validate remote continuation lifecycle from a complete digest-verified backup when local runner state is absent. - Keep corrupt, non-suspended, mismatched, and unverified state fail-closed. - Make native Plan completion and accepted-Plan wake prompts deterministic. ## Verification - A prior 45-cell local campaign passed 44 cells. The only failure was the OpenCode Plan prompt variance fixed here. - A focused OpenCode local Plan rerun passed. - ACPX Claude Daytona message and question cells passed. - Focused regressions cover delayed checkpoint close and verified remote backup lifecycle. - GitHub Build and the focused ACPX Claude Daytona Plan cell will validate this exact head. ## Risks Remote runnerd sessions now wait for their internally bounded close/checkpoint path before returning; generic provider cleanup retains the existing 100 millisecond bound. Durable run success still cannot be reversed. The environment release guard still blocks sandbox destruction when no verified backup stamp exists. ## Model Used OpenAI Codex, GPT-5.6, extended reasoning, with code execution and GitHub Actions inspection. ## Checklist - [x] I have included a thinking path that traces from project context to this change - [x] I have specified the model used (with version and capability details) - [x] I have checked ROADMAP.md and confirmed this PR does not duplicate planned core work - [x] I have searched GitHub for duplicate or related PRs and linked them above - [x] I have either (a) linked existing issues with `Fixes: #` / `Closes #` / `Refs #` OR (b) described the issue in-PR following the relevant issue template - [x] I have not referenced internal/instance-local Paperclip issues or links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip` URLs) - [x] My branch name describes the change and contains no internal task id - [ ] I have run tests locally and they pass - [x] I have added or updated tests where applicable - [ ] I have updated relevant documentation to reflect my changes - [x] I have considered and documented any risks above - [ ] All Paperclip CI gates are green - [ ] Greptile is 5/5 with no open findings - [ ] I will address all Greptile and reviewer comments before requesting merge	2026-09-05 06:25:06 -05:00
DottaandPaperclip	0ffc091473	feat(connections): add durable GitHub identities and webhooks (#12843) ... ## Thinking Path > - Paperclip is the open source app people use to manage AI agents for work > - Agents need source control access for repository work > - A shared token cannot preserve the responsible person's identity or an agent's dedicated identity > - GitHub App tokens also need durable refresh, repository access checks, and webhook delivery > - Paperclip already has managed connections, encrypted grants, run secret leases, and merge-confirmation behavior > - This pull request extends those systems with GitHub identities instead of adding a parallel credential system > - The benefit is durable GitHub access with explicit identity, repository, runtime, and webhook boundaries ## Linked Issues or Issue Description No public GitHub issue describes this connection change. This description follows the feature request template. **Subsystem affected** Connected Apps, connection grants, secret resolution, native Git runtime setup, webhook processing, and the Apps UI. **Problem or motivation** Users need to connect GitHub once and let agents use the correct GitHub identity. A run should use a dedicated agent account when one exists. Otherwise, it should use the responsible person's account. The connection must survive token expiry, repository access changes, and temporary instance downtime. **Proposed solution** Add user-owned and agent-owned GitHub grants to the existing connection model. Resolve one identity for MCP, Git, `gh`, health checks, and webhook bindings. Store provider tokens in the existing encrypted secret system. Refresh expiring token pairs under the existing lease and compare-and-swap path. Register signed Cloud webhook bindings and process normalized pull request and installation events through a durable local inbox. **Alternatives considered** An organization-wide GitHub token would lose person and agent attribution. Environment variables alone would bypass the managed connection and grant model. A new GitHub-only credential store would duplicate the existing secret and access systems. GitHub App installation tokens and private-key custody remain outside this first version. **Roadmap alignment** This change implements the Connected Apps direction. It also extends the shipped MCP Tool Gateway, per-agent secret access, and action-attribution systems. It does not add a repository catalog. The open repository catalog work in [#11234](https://github.com/paperclipai/paperclip/pull/11234) is related and complementary. ## What Changed - Added agent-owned connection grants and a per-agent credential policy with company and subject constraints. - Added a managed GitHub App method while keeping the personal access token method as an advanced fallback. - Added durable access-token and refresh-token handling with proactive rotation and one automatic recovery after a provider `401`. - Added GitHub identity and installation summaries without storing repository-name lists. - Added signed Cloud webhook binding, event lease, acknowledgement, local idempotency, pull request merge processing, and installation access handling. - Added one identity resolver for MCP, native Git, `gh`, checkout, health checks, and webhook bindings. - Added a class-3 run projection for `GH_TOKEN`, `GITHUB_TOKEN`, a `github.com`-only credential helper, SSH-to-HTTPS rewrite, and GitHub noreply commit attribution. - Added personal and dedicated-agent setup choices plus identity, repository, continuity, and webhook status in the Apps UI. - Added schema migrations, tests, and connection documentation. ## Verification - The current head is fully green in GitHub CI, including build, typecheck, all serialized/general server shards, all browser shards, policy, canary dry run, review, and security checks. - Live staging proof completed with a non-expiring GitHub App user token, selected-repository installation, repository add/remove refresh, managed MCP, native `gh`, HTTPS clone/push/delete, GitHub noreply commit attribution, signed merged-PR webhook acceptance, durable Cloud-to-instance delivery, and installation-access event processing. Temporary branches and temporary repository access were removed afterward. - `pnpm check:token-gates` passed. - `pnpm -r typecheck` passed before and after the rebase onto `origin/master`. - `pnpm build` passed. - The focused connector suite passed 285 tests after the rebase. - The full stable suite passed 5,790 tests and failed 22 tests across 8 general server files. The failures reproduced as shared-runner environment issues. They included `/tmp` versus `/private/tmp`, closed database connections, and invalid high ephemeral ports. The focused connection tests pass in isolation. ## Risks - Migrations add agent grant subjects and a durable connection-event inbox. Migration numbering and safety checks pass. - A raw GitHub user token enters the agent process for Git and `gh`. Per-tool Ask-first controls cannot limit those shell operations. The UI warns users about this boundary. - GitHub App user tokens can be non-expiring. Paperclip performs a continuity check every 30 days, but provider revocation still requires a reconnect. - The webhook path accepts only signed and bounded payloads. It stores a minimal normalized record and no raw provider payload. - GitHub repository permissions remain authoritative. Removed access can make a cached repository count temporarily stale, but runtime access fails immediately. > For core feature work, check [`ROADMAP.md`](ROADMAP.md) first and discuss it in `#dev` before opening the PR. Feature PRs that overlap with planned core work may need to be redirected — check the roadmap first. See `CONTRIBUTING.md`. ## Model Used OpenAI Codex, `gpt-5.6-sol`, extended reasoning, tool use, code execution, browser control, and multi-file repository editing. The context window size was not provided. ## Checklist - [x] I have included a thinking path that traces from project context to this change - [x] I have specified the model used (with version and capability details) - [x] I have checked ROADMAP.md and confirmed this PR does not duplicate planned core work - [x] I have searched GitHub for duplicate or related PRs and linked them above - [x] I have either (a) linked existing issues with `Fixes: #` / `Closes #` / `Refs #` OR (b) described the issue in-PR following the relevant issue template - [x] I have not referenced internal/instance-local Paperclip issues or links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip` URLs) - [x] My branch name describes the change (e.g. `docs/...`, `fix/...`) and contains no internal Paperclip ticket id or instance-derived details - [ ] I have run tests locally and they pass - [x] I have added or updated tests where applicable - [x] I have updated relevant documentation to reflect my changes - [x] I have considered and documented any risks above - [x] All Paperclip CI gates are green - [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups - [x] I will address all Greptile and reviewer comments before requesting merge --------- Co-authored-by: Paperclip <noreply@paperclip.ing>	2026-09-04 18:02:52 -05:00
Dotta	263f181fed	fix(runner): complete live hot restart adoption (#12852) ... ## Thinking Path > - Paperclip is the open source app people use to manage AI agents for work. > - Paperclip Runner owns durable provider sessions and streams their work to the control plane. > - Pull request #12845 added native restart recovery for live and dead local runners. > - A real browser test found three live-adoption gaps after that pull request merged. > - Lazy runner process ownership was not always stored before restart. > - The old controller did not release its PRP authority without closing the provider turn. > - Reconnect events could arrive before the active provider turn was restored. > - This pull request closes those gaps and proves the same turn completes after a UI hot restart. ## Linked Issues or Issue Description Refs #12845 Related search results: #12646 covers indeterminate command results after a runner restart. It does not cover controller adoption or active-turn rebinding. No open duplicate pull request was found. ## What Changed - Store lazy runnerd process ownership after provider session creation, read, and resume. - Detach native PRP controller authority during coordinated hot shutdown. Keep the live provider turn running. - Restore the exact checkpointed provider session when bounded PRP identity events have been compacted. - Restore the active provider turn before reconnect events are replayed. This prevents `turn_binding_mismatch`. - Keep exact live ownership by the current controller out of generic orphan recovery. - Add driver, transport, and server regression tests for these paths. ## Verification - Ran 12 Codex driver lifecycle tests. - Ran 53 runnerd transport tests. - Ran 143 recovery and orphan-reaper server tests. - Ran all 8 real-process restart recovery scenarios. - Ran all 96 existing runner E2E unit tests. - Ran runner TypeScript typecheck. - Ran server TypeScript typecheck. - Ran the migration replay test and migration safety checks. - Tested the board UI on an isolated local instance. A real local Codex-backed turn entered a 120-second terminal wait. The UI `Restart now` action replaced the server and kept the same runner PID, process start time, run ID, native session ID, runner ID, provider session ID, and active turn. The original turn then completed. - Confirmed one heartbeat run, no retry row, one result, one proposed-result event, one terminal event, no protocol errors, no active recovery state, and no surviving runner or provider process. ## Risks - A live runner can continue provider work while no server owns the control route. Recovery fails closed when the process fingerprint or durable identity is ambiguous. - Provider identity can be restored from the database only for an exact verified adoption claim. An authenticated live `session.snapshot` validates that identity before the driver can resume. - The new detach path applies only to native sessions that expose restart detachment. Other adapters keep their existing shutdown behavior. - This follow-up does not change the database migration or `package.json`. The migration in #12845 remains replay-safe through `ADD COLUMN IF NOT EXISTS` and its embedded-Postgres idempotence test. The dedicated real-process command remains in `doc/DEVELOPING.md`. ## Model Used - OpenAI Codex based on GPT-5. The exact serving build and context-window size are not exposed. The run used extended reasoning, repository tools, shell execution, and in-app browser automation. ## Checklist - [x] I have included a thinking path that traces from project context to this change - [x] I have specified the model used (with version and capability details) - [x] I have checked ROADMAP.md and confirmed this PR does not duplicate planned core work - [x] I have searched GitHub for duplicate or related PRs and linked them above - [x] I have either (a) linked existing issues with `Fixes: #` / `Closes #` / `Refs #` OR (b) described the issue in-PR following the relevant issue template - [x] I have not referenced internal/instance-local Paperclip issues or links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip` URLs) - [x] My branch name describes the change and contains no internal Paperclip ticket id or instance-derived details - [x] I have run tests locally and they pass - [x] I have added or updated tests where applicable - [x] I have updated relevant documentation to reflect my changes - [x] I have considered and documented any risks above - [x] All Paperclip CI gates are green - [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups - [x] I will address all Greptile and reviewer comments before requesting merge	2026-09-04 17:54:44 -05:00
Dotta	7b094724e6	fix(runner): recover native sessions across restarts (#12845) ... ## Thinking Path > - Paperclip is the open source app people use to manage AI agents for work. > - The Paperclip Runner keeps durable run and provider state outside one server process. > - A server restart can leave that runner alive or can interrupt it after a provider checkpoint. > - The old startup path used handoff intent and PID evidence, but it did not reconstruct native ownership. > - That gap could block the issue, create a replacement run, or start duplicate provider work. > - This pull request adds durable same-run recovery for coordinated and uncoordinated restarts. > - The benefit is exact recovery of the run, runner, session, provider, steering, and finalization state. ## Linked Issues or Issue Description Refs #9628. That pull request added earlier local-adapter hot-restart work. This change adds native PRP authority reconstruction and same-run provider resume. Refs #10935. That pull request handles missing hot-restart snapshots. This change also supports hard restarts with no snapshot. Refs #11624. That pull request prevents unsafe retry after an adopted legacy process exits. This change reconciles native terminal evidence before provider recovery. Refs #12070. That pull request improves process liveness checks. This change also binds recovery to a process-start fingerprint and fails closed on ambiguity. **What happened?** The server could record hot-restart intent, but startup did not rebuild native runner ownership. A live runner could not re-register its PRP authority. A dead runner could not resume the exact native and provider session on the same heartbeat run. Generic recovery could then block the issue or create replacement work. **Expected behavior** A live native runner must reconnect with the same PID and logical identities. A dead runner must resume the same durable session and heartbeat run with only a new operating-system PID. A proposed or terminal result must finalize once before any provider turn starts. Ambiguous process or session evidence must stay blocked without a signal or duplicate spawn. **Steps to reproduce** 1. Start a Paperclip Runner heartbeat and wait for an active provider turn. 2. Restart only the Paperclip server, with or without a hot-restart marker. 3. Observe that the old startup path does not reconstruct the native control-plane authority. 4. Kill both the server and runner after a provider checkpoint. 5. Observe that the old path cannot resume the exact native session on the original heartbeat run. **Paperclip version or commit** The defect was reproduced from commit `1991f31fd53e7f7794d5c2e4b93be384ade2b41d`. This branch is rebased onto the current `master`. **Deployment mode** Local development and self-hosted server deployments that use the local Paperclip Runner. ## What Changed - Added correlated hot-restart requests and version-compatible native handoff fields. - Added controller boot identity, process-start identity, controller generation, recovery state, request id, and bounded history to the native finalization ledger. - Added transactional recovery claims for live-runner reattach, dead-runner resume, and incomplete bootstrap. - Added fail-closed ownership takeover rules and process identity validation. - Added live runner adoption to the local runner transport without a duplicate spawn. - Added same-run provider checkpoint resume and legacy retry-row compatibility. - Reconciled proposed and terminal results before runner or provider recovery. - Bound the HTTP and PRP listener before startup recovery and delayed scheduling and generic reapers until classification completes. - Added restart-aware health diagnostics, run-log recovery transitions, durable runner diagnostics, and bounded shutdown finalizer draining. - Moved restart-survivable diagnostics into runner-owned, pre-redacted bounded writes; raw stdout and stderr are never persisted. - Added process-start fencing for controller, runner, and provider PIDs; startup classifies every candidate without an implicit cap. - Added crash-recoverable, contention-safe development restart-request coordination and failed-startup listener cleanup. - Added a credential-free real-process restart suite for eight restart, scale, and identity scenarios. - Documented native restart operation, persistence, diagnostics, and verification. ## Verification - The documented native restart commands passed. They ran eight real-process/database recovery scenarios and the live runner adoption transport test. - Native executor tests passed: 111 tests. - Heartbeat recovery tests passed: 124 tests. - Hot restart, health, and shutdown tests passed: 52 tests. - The broader affected server suite passed: 350 tests. - Focused native recovery and startup tests passed: 49 tests. - Runner transport and control-plane tests passed: 63 tests. - Runner-owned diagnostic tests passed for write-time bounding, credential redaction, private file modes, and raw stream non-persistence. - Development restart coordination tests passed: 11 tests. - Database migration checks and the partial-application/replay regression test passed. - Server, database, and Paperclip Runner typechecks passed. - `git diff --check` passed. - Full Paperclip PR CI passed, including build, canary, all five general server shards, all five serialized server shards, all three browser E2E shards, workspace suites, and release-registry verification. - Greptile completed at 5/5 with no outstanding findings, recommendations, follow-ups, or open review threads. ## Risks - Moderate risk. This changes startup ordering and ownership transfer for active native runs. - The migration adds nullable columns and does not rewrite existing rows. - Recovery fails closed when process or durable session identity is incomplete or contradictory. - The first implementation supports the local Paperclip Runner. Remote targets keep their existing behavior. - The real-process suite covers cleanup and asserts that no runner or provider process survives each test. > For core feature work, check [`ROADMAP.md`](ROADMAP.md) first and discuss it in `#dev` before opening the PR. Feature PRs that overlap with planned core work may need to be redirected — check the roadmap first. See `CONTRIBUTING.md`. ## Model Used - OpenAI Codex with GPT-5. The runtime did not expose a more specific model revision or context-window size. Repository editing, shell execution, database tests, and real-process test execution were enabled. ## Checklist - [x] I have included a thinking path that traces from project context to this change - [x] I have specified the model used (with version and capability details) - [x] I have checked ROADMAP.md and confirmed this PR does not duplicate planned core work - [x] I have searched GitHub for duplicate or related PRs and linked them above - [x] I have either (a) linked existing issues with `Fixes: #` / `Closes #` / `Refs #` OR (b) described the issue in-PR following the relevant issue template - [x] I have not referenced internal/instance-local Paperclip issues or links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip` URLs) - [x] My branch name describes the change (e.g. `docs/...`, `fix/...`) and contains no internal Paperclip ticket id or instance-derived details - [x] I have run tests locally and they pass - [x] I have added or updated tests where applicable - [x] I have updated relevant documentation to reflect my changes - [x] I have considered and documented any risks above - [x] All Paperclip CI gates are green - [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups - [x] I will address all Greptile and reviewer comments before requesting merge	2026-09-04 15:03:53 -05:00
Nicky LeachandPaperclip	184b014c25	feat(telemetry): add the agent.task_run event and emit it at every terminal run transition (#12809) ... ## Thinking Path > - Paperclip is the open source app people use to manage AI agents for work > - Paperclip records agent run outcomes through telemetry and run lifecycle services > - Terminal run transitions need one consistent event for outcome analysis > - The current paths do not report every terminal transition through one event > - This pull request adds the agent.task_run event and emits it at each terminal transition > - The benefit is complete run outcome data without exposing raw task identifiers ## Linked Issues or Issue Description **What existing behavior does this improve?** Paperclip telemetry reports agent activity, but it does not report every terminal task run through one event. **Subsystem affected** Cross-cutting (multiple of the above): packages/shared telemetry and server run lifecycle services. **Current behavior** Several run paths write a terminal status without a matching agent.task_run telemetry event. **Proposed behavior** Each terminal run transition emits one agent.task_run event. The event records the terminal state and uses the existing pseudonym helper for the optional task identifier. **Reason and benefit** Complete terminal-run data helps operators measure agent outcomes. The pseudonym helper prevents the raw task identifier from leaving the installation. **Breaking changes** None. The change adds an event and keeps existing event behavior compatible. ## What Changed - Add the agent.task_run telemetry contract and client helper. - Reuse the existing pseudonym helper for the task identifier. The helper hashes the identifier with a per-installation salt and returns 16 hexadecimal characters. The raw identifier never leaves the installation. Existing identifiers do not move. - Emit one event from each legacy, native, recovery, and issue terminal transition. - Keep emissions outside database transactions and make delivery best-effort. - Add regression tests for event shape, hashing, terminal transitions, and emission failures. - Document the event and its privacy rule in the telemetry data contract. ## Verification - `npx tsc --noEmit` in `server/` passes at the submitted commit. - The pull-request CI suite must pass. CI is the authority because local Vitest has a known dependency artifact. - The added regression tests cover event output shape, per-installation hash divergence, raw identifier handoff, omitted identifiers, and non-throwing emits. ## Risks - A missed terminal path could reduce event coverage. - Telemetry delivery remains best-effort and cannot change run finalization. - The pseudonym helper uses installation-specific state, so identifiers differ between installations. ## Model Used OpenAI Codex, GPT-5, tool use and code execution. Context window details were not provided. ## Checklist - [x] I have included a thinking path that traces from project context to this change - [x] I have specified the model used (with version and capability details) - [x] I have checked ROADMAP.md and confirmed this PR does not duplicate planned core work - [x] I have searched GitHub for duplicate or related PRs and linked them above - [x] I have either (a) linked existing issues with `Fixes: #` / `Closes: #` / `Refs #` OR (b) described the issue in-PR following the relevant issue template - [x] I have not referenced internal/instance-local Paperclip issues or links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip` URLs) - [x] My branch name describes the change (e.g. `docs/...`, `fix/...`) and contains no internal Paperclip ticket id or instance-derived details - [x] I have run tests locally and they pass - [x] I have added or updated tests where applicable - [x] I have updated relevant documentation to reflect my changes - [x] I have considered and documented any risks above - [x] All Paperclip CI gates are green - [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups - [x] I have addressed all Greptile and reviewer comments before requesting merge --------- Co-authored-by: Paperclip <noreply@paperclip.ing>	2026-09-04 08:21:32 -07:00
Dotta	af3023f1e3	fix(runner): repair paid provider startup paths (#12769) ... ## Thinking Path > - Paperclip manages AI agents that perform work. > - Paperclip Runner connects durable task runs to local provider processes. > - The full-stack paid matrix exposed failures after the runner integrity repair. > - Verified JavaScript entrypoints lost their relative module graph when Linux executed them through descriptor paths. > - Returned provider startup errors also remained pending and became indeterminate after recovery. > - Sparse Codex tool lifecycle events lost the `write_document` identity before task transcript projection. > - This pull request repairs those three boundaries and makes the structured-question fixture deterministic. > - The benefit is repeatable provider startup, exact failure replay, and correct inline Plan placement. ## Linked Issues or Issue Description Refs #12721 and #12700. **What happened?** The paid runner matrix failed ACPX and OpenCode startup before provider session creation. The runner journal then replaced the original startup error with an indeterminate recovery result. Native Codex saved a Plan but rendered it only as a fallback card. A legacy Claude waiting reply could also echo the reserved terminal marker before the answer arrived. **Expected behavior** Verified JavaScript providers must start from immutable descriptor-backed artifacts. Returned startup failures must persist as terminal failed command results. Native tool lifecycle updates must preserve the `write_document` boundary. Pre-answer fixture output must not contain the reserved terminal marker. **Steps to reproduce** 1. Run the local provider cells in the Runner Full-Stack E2E workflow. 2. Observe ACPX and OpenCode fail during `session.open` before provider execution. 3. Observe recovery report `execution_indeterminate` instead of the original startup error. 4. Run the native Codex Plan cell and observe the fallback Plan card after the tool activity row. 5. Run the legacy Claude structured-question resume cell and observe an early marker echo in waiting prose. **Paperclip version or commit** `0f9452101740835ce0b1488a204bf48acd5bafc3` **Deployment mode** Local development with the paid GitHub Actions acceptance workflow. ## What Changed - Bundle the ACPX sidecar and OpenCode proxy as self-contained Node ESM entrypoints before hashing and verified descriptor launch. - Anchor ACPX dynamic provider package resolution at a controller-derived provider-pack root and keep that root out of the provider child environment. - Persist executor-returned startup errors as redacted durable failed command results while retaining indeterminate recovery for true process death. - Coalesce sparse native tool items by stable ID so a late `write_document` name, input, and result reach the transcript boundary once. - Forbid the structured-question fixture from spelling or announcing its reserved terminal marker before the user answers. ## Verification - Rust and TypeScript regression tests cover durable failed replay, true crash ambiguity, bundle closure, package-root derivation, environment filtering, exact Codex tool lifecycle coalescing, and prompt determinism. - Local execution is intentionally limited to formatters and static diff checks. GitHub Actions will run tests, type checks, builds, and security checks. - After ordinary CI is green, scoped paid cells will validate one ACPX launch, one OpenCode launch, native Codex Plan projection, and legacy Claude structured resume before a complete matrix rerun. - Prior failing matrix: https://github.com/paperclipai/paperclip/actions/runs/33682434315 ## Risks - Bundling changes the bytes covered by provider launch hashes. Provider-pack generation already hashes the final built files. - ACPX still loads qualified provider packages dynamically. The controller supplies a normalized package root, while existing version, digest, path, and descriptor checks remain active. - Durable `failed` is terminal. Replays return the same redacted result and do not execute the provider effect twice. > For core feature work, check [`ROADMAP.md`](ROADMAP.md) first and discuss it in `#dev` before opening the PR. Feature PRs that overlap with planned core work may need to be redirected — check the roadmap first. See `CONTRIBUTING.md`. ## Model Used OpenAI Codex based on GPT-5 with agentic reasoning, repository inspection, code editing, Git, parallel subagents, and GitHub Actions coordination. The exact deployed snapshot and context-window size are not exposed to this task. ## Checklist - [x] I have included a thinking path that traces from project context to this change - [x] I have specified the model used (with version and capability details) - [x] I have checked ROADMAP.md and confirmed this PR does not duplicate planned core work - [x] I have searched GitHub for duplicate or related PRs and linked them above - [x] I have either linked related public work or described the bug in this PR - [x] I have not referenced internal or instance-local Paperclip issues or links - [x] My branch name describes the change and contains no internal ticket id - [ ] I have run tests locally and they pass (intentionally deferred to GitHub Actions) - [x] I have added or updated tests where applicable - [x] No documentation change is required for this runtime repair - [x] I have considered and documented the risks above - [ ] All Paperclip CI gates are green - [ ] Greptile is 5/5 with no open P2s, recommendations, or follow-ups - [x] I will address all Greptile and reviewer comments before requesting merge	2026-09-04 07:58:44 -05:00
Dotta	0f94521017	fix(runner): restore local session and task integrity (#12721) ... ## Thinking Path > - Paperclip is the control plane for agents that perform work. > - Paperclip Runner connects durable provider sessions to individual task runs through PRP. > - Provider continuity and per-run authority are different lifetimes. > - The existing implementation mixed those lifetimes and lost event metadata between provider frames, runnerd, persistence, API sanitization, and the task thread. > - That caused failed continuation, missing progress and Plans, duplicate replies, hidden failures, and unsafe recovery. > - This repair gives every heartbeat fresh authority, preserves qualified provider-session continuity, and restores one lossless presentation path without changing direct adapters. ## Linked Issues or Issue Description **What happened?** A second native heartbeat could reuse tickets, leases, command receipts, sequence state, and run identity from the first heartbeat. Provider phase and item identity could be lost before the UI read them. Redaction could corrupt protocol discriminators while still missing malformed credential tails. The task thread could fold progress into the final response, hide failures, or show more than one final answer. Native Codex also exposed approval modes that do not yet have a durable approval bridge. **Expected behavior** Each heartbeat uses a new PRP authority epoch. Codex and OpenCode preserve exact qualified provider sessions; ACPX emits an explicit continuity event when its qualified process-replacement policy is used. Every accepted provider event is presented, classified as internal, or surfaced as unsupported. The task page shows chronological progress, reasoning summaries, activity, Plans, interactions, terminal failures, and exactly one final reply. Direct adapters retain their existing path. **Steps to reproduce** 1. Enable the unified experimental Paperclip Runner setting. 2. Create a local native Codex, OpenCode, ACPX Claude, or ACPX Codex agent. 3. Run response, Plan, structured-question/resume, restart, cancellation, and failure scenarios. 4. Reload the task while active, waiting, failed, and settled. 5. On the old implementation, observe stale run authority, missing classifications, incomplete output, or duplicated/folded replies. **Paperclip version or commit** The repair is based directly on `master` at `87d05e194b643810d16d20612115acd01d735d43`. **Deployment mode** Local development with the embedded database. Related work: Refs #12616, #12646, #12666, #12685, and #12700. ## What Changed - Rotates PRP control-plane, outbox, ticket, lease, command, receipt, and sequence authority for each heartbeat while carrying forward only a validated provider-session identity. - Reads `control-plane-state.json`, validates both durable schemas and lifecycle values, resumes coherent current runs, archives qualified settled authority, and quarantines malformed or mismatched scoped state without moving ambiguous live legacy state. - Preserves Codex provider phase and stable item identities so commentary remains progress and only `final_answer` becomes final. - Adds raw OpenCode HTTP/SSE boundary coverage and canonical reasoning lifecycle mapping. - Makes ACPX normalization lossless for visible reasoning, tool lifecycle metadata, stable bounded identities, Plan revisions, structured requests, failures, and qualified process replacement. Only the compatible terminal assistant message is promoted as final. - Applies schema-aware redaction before generic JWT-shaped detection and scans every diagnostic string leaf. Malformed raw/escaped quoted credential tails are redacted in both server and durable Rust state. - Restores snapshot-style chronological task presentation, expandable tool activity, inline Plan cards, visible waiting/resume/cancel/failure states, and exactly one final answer. - Makes `never` the only qualified native Codex permission mode and rejects unsupported persisted native modes with remediation. OpenCode and ACPX policies remain intact. - Keeps the unified experimental Runner setting as the only enablement flag. Onboarding and direct Codex, Claude, and OpenCode stay on their legacy execution/finalization paths. - Adds cross-language goldens, authority/recovery/fault coverage, exact response/count assertions, and native plus legacy acceptance scenarios. ## Verification - Pull-request GitHub Actions run Rust formatting/tests, TypeScript checks, server/UI tests, builds, protocol drift checks, browser E2E, and security scans. - A separate workflow-only validation ref is pinned directly on this PR head and runs the 35-cell paid local matrix: three core scenarios plus structured-question resume and restart/resume for native Codex, native OpenCode, ACPX Claude, ACPX Codex, and direct Codex/Claude/OpenCode. Run: https://github.com/paperclipai/paperclip/actions/runs/33682434315 - Acceptance requires exact single visible replies, monotonic sequences, matching envelope discriminators, one semantic terminal, one run terminal, no unresolved interaction, no duplicate mutation, no secret leakage, provider continuity, and zero native rows for direct adapters. - Per maintainer direction, tests are running in GitHub Actions rather than on the slower local host. Only formatters and static diff checks were run locally. ## Risks - Recovery from old or partial filesystem state is sensitive. The repair fails closed, preserves active or unverifiable authority, and quarantines only state whose scoped ownership is safe to move. - Provider event formats can change. Closed validators and boundary goldens turn new or malformed events into visible diagnostics instead of silent drops. - Shared task presentation could affect direct adapters. Runtime-fact gating plus the direct-adapter matrix protect the existing path. - Managed and remote providers are not qualified here. Shared code continues to compile and fail safely, but live qualification is deferred. > For core feature work, check [`ROADMAP.md`](ROADMAP.md) first and discuss it in `#dev` before opening the PR. Feature PRs that overlap with planned core work may need to be redirected — check the roadmap first. See `CONTRIBUTING.md`. ## Model Used OpenAI Codex based on GPT-5. The exact deployed snapshot and context-window size are not exposed to this task. It used agentic reasoning, repository inspection, code editing, Git, parallel subagents, and GitHub Actions. ## Checklist - [x] I have included a thinking path that traces from project context to this change - [x] I have specified the model used (with version and capability details) - [x] I have checked ROADMAP.md and confirmed this PR does not duplicate planned core work - [x] I have searched GitHub for duplicate or related PRs and linked them above - [x] I have either (a) linked existing issues with `Fixes: #` / `Closes #` / `Refs #` OR (b) described the issue in-PR following the relevant issue template - [x] I have not referenced internal/instance-local Paperclip issues or links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip` URLs) - [x] My branch name describes the change and contains no internal Paperclip ticket id - [ ] I have run tests locally and they pass (intentionally deferred to GitHub Actions) - [x] I have added or updated tests where applicable - [x] I have updated relevant documentation to reflect my changes - [x] I have considered and documented risks above - [ ] All Paperclip CI gates are green - [ ] The paid local-provider matrix is green - [ ] Greptile is 5/5 with no open P2s, recommendations, or follow-ups - [x] I will address all Greptile and reviewer comments before requesting merge	2026-09-02 16:11:26 -05:00
Dotta	fdf8c8464d	feat(runner): add managed provider backends (#12699) ... ## Thinking Path > - Paperclip is the open source app people use to manage AI agents for work. > - The Paperclip Runner provides durable, provider-neutral agent execution. > - The current stack supports qualified local providers but omits the managed provider paths from the integration branch. > - Claude Managed Agents and AWS AgentCore need explicit profile qualification, durable recovery, usage accounting, and cleanup controls. > - This pull request adds those managed backends as the third part of the Runner parity stack. > - The benefit is managed execution without weakening the default-off Runner rollout gate. ## Linked Issues or Issue Description **Subsystem affected** Cross-cutting: Runner, server orchestration, database profiles, CLI, and adapter configuration UI. **Problem or motivation** The current Runner stack cannot select or execute the managed Claude Agents API or AWS Bedrock AgentCore Harness backends. It also lacks qualified profile storage and recovery checks for those remote resources. **Proposed solution** Add qualified managed and remote profiles, API and CLI management, exact provider selection, durable lifecycle handling, cumulative usage accounting, bounded cleanup, and retention acknowledgement. Keep `enableNativeRunner` default-off. **Alternatives considered** A direct copy of the old integration branch was rejected because its provider contracts, model values, credential flow, and migration history no longer match the current base. A single large parity pull request was also rejected because stacked review keeps each subsystem bounded. **Roadmap alignment** This continues the existing Runner architecture and rollout work. It does not introduce a separate execution system. **Additional context** This pull request is based on the merged #12691 and #12685 stack. It also closes the delayed security-review findings reported on #12691 by binding qualified ACPX and OpenCode launch artifacts to the bytes actually executed. A GitHub search for managed agent, AgentCore, and Claude managed work found no duplicate public issue or pull request. ## What Changed - Add Claude Managed Agents and AWS AgentCore provider executors to runnerd. - Add qualified managed and remote profile storage, routes, OpenAPI contracts, CLI commands, and migration 0237. - Validate profile ownership, enabled state, exact qualified revision, model, agent version, and secret binding before persistence and recovery. - Persist durable provider session and owned skill state for restart-safe cleanup. - Reconcile uncertain create responses and delete remote sessions before owned skills. - Track cumulative provider usage and enforce positive session spend caps. - Recover interrupted AgentCore usage at the next turn boundary by charging the prior invocation ceiling exactly once; keep the session gated until an explicit monotonic budget raise. - Isolate AgentCore AWS configuration from host profiles and credential-process/SSO configuration while preserving workload identity. - Require OpenCode 1.18.17 and fixed build-owned provider-pack artifact paths; remove the ambient executable override. - Snapshot and content-verify ACPX and OpenCode commands, scripts, and provider executables before launch. Linux executes sealed inherited descriptors; macOS uses authenticated private snapshots with retry-safe rematerialization at the spawn boundary. - Persist canonical ACPX and OpenCode launch-profile digests, reject drift across fresh recovery, and make recovery failures sticky. - Close and journal unsafe ACPX active-turn recovery before any provider bootstrap or reconnect. - Add managed provider fields to the Runner configuration UI and permission projection. - Preserve the default-off `enableNativeRunner` experimental flag. ## Verification - `pnpm -r typecheck` - `pnpm build` - Focused managed server, database, CLI, Runner TypeScript, Rust, Claude, AgentCore, ACPX, OpenCode, process-supervisor, and durable-recovery tests passed. - `cargo test -p paperclip-runner-core --lib --locked` (160 tests) - `cargo check --workspace --all-targets --locked` - Native Codex integration tests passed (60 tests); native provider tests passed (7 tests); server native-runtime tests passed (87 tests). - Verified-launch replacement, nested-spawn retry, exact-version, profile-drift, sticky-failure, and no-bootstrap active-recovery tests passed. - `git diff --check` - The PR changes 91 files. `pnpm-lock.yaml` is unchanged. The Rust workspace lockfile adds the approved `rustix` dependency used for safe descriptor handling while `#![forbid(unsafe_code)]` remains enabled. ## Risks - The provider APIs can change while they are in beta. Exact qualification and fail-closed recovery checks limit drift. - Remote cleanup can fail after a partial create. Durable ownership inventories and retry-safe deletion preserve recovery state. - Migration 0237 adds profile tables. The generated migration and snapshot pass the repository migration checks. - Managed execution can incur provider cost. Positive default spend caps and explicit retention acknowledgement limit accidental use. - An interrupted AgentCore invocation without final metadata is conservatively charged to its active session ceiling. This can overstate cost, but cannot undercount it; later work requires an explicit budget increase. - Linux qualified launches use sealed memory descriptors. macOS lacks executable-descriptor APIs, so the runner uses owner-only private snapshots and minimizes linked-path lifetime; hostile same-UID processes remain outside the documented local-host trust boundary. - The global Runner feature remains default-off. > For core feature work, check [`ROADMAP.md`](ROADMAP.md) first and discuss it in `#dev` before opening the PR. Feature PRs that overlap with planned core work may need to be redirected — check the roadmap first. See `CONTRIBUTING.md`. ## Model Used OpenAI Codex, GPT-5, with tool use, code execution, and subagent review. ## Checklist - [x] I have included a thinking path that traces from project context to this change - [x] I have specified the model used (with version and capability details) - [x] I have checked ROADMAP.md and confirmed this PR does not duplicate planned core work - [x] I have searched GitHub for duplicate or related PRs and linked them above - [x] I have either (a) linked existing issues with `Fixes: #` / `Closes #` / `Refs #` OR (b) described the issue in-PR following the relevant issue template - [x] I have not referenced internal/instance-local Paperclip issues or links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip` URLs) - [x] My branch name describes the change and contains no internal Paperclip ticket id or instance-derived details - [x] I have run tests locally and they pass - [x] I have added or updated tests where applicable - [x] I have updated relevant documentation to reflect my changes - [x] I have considered and documented any risks above - [x] All Paperclip CI gates are green - [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups - [x] I will address all Greptile and reviewer comments before requesting merge	2026-09-02 00:48:30 -05:00
Dotta	84bedd4ca1	feat(runner): activate qualified OpenCode and ACPX providers (#12691) ... ## Thinking Path > - Paperclip is the open source app people use to manage AI agents for work. > - Paperclip Runner is the experimental native runtime for governed agent work. > - The runtime contracts already describe Codex, OpenCode, and ACPX providers. > - The merged control plane still rejected OpenCode and ACPX for new runner agents. > - Runnerd also selected only the Codex provider implementation. > - This pull request activates the qualified OpenCode and ACPX paths from the form to runnerd. > - The benefit is one durable runner path with provider-specific permissions and recovery. ## Linked Issues or Issue Description Refs #12685 **Subsystem affected** This change affects the runner package, server orchestration, adapter configuration, and UI configuration. **Problem or motivation** Paperclip Runner stores provider contracts for OpenCode and ACPX. New agents cannot select those providers. Runnerd cannot execute those stored provider descriptors. The UI also shows only Codex. **Proposed solution** Accept the qualified OpenCode 1.18.17 profile and the fixed ACPX Claude and Codex profiles. Route them through runnerd. Keep provider selection, model selection, permissions, credentials, events, and recovery inside closed provider-specific boundaries. **Alternatives considered** One option was to keep the contracts dormant. That option leaves stored configuration and runtime behavior out of sync. Another option was to enable every ACPX agent. That option is not safe because Pi does not yet have the same verified launch path. **Roadmap alignment** This change supports the completed cloud and sandbox agent milestone. It also supports self-healing runs and governed agent execution. It does not add a new roadmap surface. ## What Changed - Add one server profile resolver for Codex, OpenCode, and qualified ACPX descriptors. - Keep `adapterConfig` as the provider and permission authority for fresh runs. - Add Paperclip Runner provider, ACPX agent, and provider-specific permission controls to the UI. - Reset the model to a compatible qualified value when the provider changes. - Route Codex, OpenCode, and ACPX through the durable runnerd provider selector. - Add a durable ACPX executor with bounded state, recovery, events, tool receipts, and identity checks. - Remove Codex labels from OpenCode events, results, evidence, and recovery diagnostics. - Pass only provider-specific credential names to child processes. - Keep ACPX Pi unavailable and reject it before process launch. - Keep the existing Paperclip Runner experimental flag unchanged. ## Verification - `pnpm exec vitest run packages/paperclip-runner/src/backends/native-backend-factory.test.ts packages/paperclip-runner/src/live/runnerd-codex-transport.test.ts packages/adapters/codex-local/src/ui/build-config.test.ts ui/src/adapters/codex-local/config-fields.test.tsx server/src/__tests__/adapter-registry.test.ts server/src/__tests__/adapter-routes.test.ts server/src/__tests__/agent-adapter-validation-routes.test.ts server/src/__tests__/company-portability.test.ts server/src/services/native-runtime/runtime-mode.test.ts server/src/services/native-runtime/native-session-executor.test.ts server/src/services/heartbeat-runner-provider-config.test.ts` - The focused TypeScript, server, and UI suites passed 274 tests. - `cargo test -p paperclip-runner-core --test native_provider_backend` - The executable native provider integration suite passed 4 tests. - `cargo test -p paperclip-runner-core --lib` - The Rust unit suite passed 91 tests. - `pnpm -r typecheck` - `pnpm check:token-gates` - `pnpm build` - `git diff --check codex/runner-parity-task-runtime...HEAD` ## Risks - This changes provider process selection and durable recovery. The experimental flag still gates every fresh Paperclip Runner run. - OpenCode requires a model in `provider/model` form and stays pinned to version 1.18.17. - ACPX accepts only exact Claude and Codex profile versions and models. Pi stays unavailable. - ACPX steering stays unavailable and reports that limit through the driver capabilities. - Child processes receive explicit environment allowlists. They do not inherit the full server environment. - This pull request has no database migration. ## Model Used OpenAI Codex, GPT-5, with tool use, code execution, and subagent review. ## Checklist - [x] I have included a thinking path that traces from project context to this change - [x] I have specified the model used (with version and capability details) - [x] I have checked ROADMAP.md and confirmed this PR does not duplicate planned core work - [x] I have searched GitHub for duplicate or related PRs and linked them above - [x] I have either (a) linked existing issues with `Fixes: #` / `Closes #` / `Refs #` OR (b) described the issue in-PR following the relevant issue template - [x] I have not referenced internal/instance-local Paperclip issues or links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip` URLs) - [x] My branch name describes the change (e.g. `docs/...`, `fix/...`) and contains no internal Paperclip ticket id or instance-derived details - [x] I have run tests locally and they pass - [x] I have added or updated tests where applicable - [x] I have updated relevant documentation to reflect my changes - [x] I have considered and documented any risks above - [ ] All Paperclip CI gates are green - [ ] Greptile is 5/5 with no open P2s, recommendations, or follow-ups - [x] I will address all Greptile and reviewer comments before requesting merge	2026-09-01 21:54:30 -05:00
Nicky LeachandPaperclip	b4f302d040	feat(grok-local): copy a refreshed sandbox credential back to the host (#12696) ... ## Thinking Path > - Paperclip is the open source app people use to manage AI agents for work > - Paperclip runs agents through provider-specific adapters in local and remote environments > - A remote Grok run can refresh its credential inside its sandbox > - The host copy can become stale when teardown discards that refreshed credential > - This pull request copies the refreshed credential back through a locked, fail-closed teardown path > - The benefit is that later Grok runs can use the refreshed host credential without another login ## Linked Issues or Issue Description Refs: #12618 **Agent or provider** Grok local adapter. **Why this adapter is useful** A remote Grok run can refresh its access token during a run. Copying the refreshed credential back to the host keeps later runs ready to use. **How the agent is invoked** Paperclip invokes the Grok local adapter through its remote subscription run path. The adapter stages the company Grok home as a sandbox asset. The change adds a copy-out step on the teardown path. ## What Changed - `grok-auth-merge-decision.cjs` adds a host predicate in its own process. It compares the whole `<issuer>::<uuid>` identity key of the two files. It reads `expires_at` as an ISO-8601 string, an epoch-seconds number, or an epoch-milliseconds number. It exits 10 to use the source, 20 to keep the destination, 21 when the expiry shape is unreadable, and 22 when the source expiry sits more than 400 days after the host clock. It fails closed in every unclear case: an unusable side, a different identity, an absent expiry, a tie, an unreadable expiry, and an implausible expiry all keep the destination. - `grok-auth-merge-decision.ts` adds a wrapper that runs the predicate and maps the exit code to a typed result. - `grok-auth-copyback.ts` adds `copyBackGrokAuth({ hostHomeDir, readSandboxAuth, log, env })`. It locks on `hostHomeDir` with `withDirectoryMergeLock`, stages the sandbox bytes into a private `0600` temporary file, runs the predicate, and installs the file with an atomic rename in the same directory. It keeps no backup of the displaced credential. It leaves no temporary file on the success path, the keep path, or an error path. On an error it logs the `errno` code only, then re-throws. - `execute.ts` adds a `restore` callback to the Grok `home` asset. The callback takes the destination from `resolveManagedGrokHomeDir(process.env, agent.companyId)`, never from `env.GROK_HOME`. A copy-out failure does not fail the run. - `package.json` updates the `build` script to copy `grok-auth-merge-decision.cjs` into `dist/server/`, because `tsc` does not copy a `.cjs` file. **The credential shape this predicate reads** A redacted sample of a real vendor credential answered four structural questions. The answers hold no credential bytes, no account identifier, no file path, and no timestamp value. 1. `expires_at` is present. 2. `expires_at` sits inside the value object, under the `<issuer>::<uuid>` key. It is not a top-level field. 3. `expires_at` is an ISO-8601 string. It carries UTC time with a trailing `Z` and six fractional-second digits. 4. A normal run rewrites `auth.json`. The value object carries a `refresh_token` next to `expires_at`, so the client refreshes the access token and rewrites the file. ## Verification - [x] `pnpm vitest run packages/adapters/grok-local` — 114 tests in 12 files pass. - [x] `pnpm --filter @paperclipai/adapter-grok-local typecheck` — clean. - [x] `pnpm --filter @paperclipai/adapter-grok-local build` — succeeds, and `dist/server/grok-auth-merge-decision.cjs` exists after the build. - [x] Continuous integration is green on every check. ## Risks The predicate keeps the host credential when identity, expiry, file access, or freshness data is unclear. The copy-out path can log an error and leave the run successful when it cannot install the refreshed credential. The atomic rename and directory lock protect the host file from partial writes and concurrent copy-out actions. ## Model Used OpenAI GPT-5, current deployment. The exact runtime version and context window are not exposed to this agent. The model used tool calls and code inspection. ## Checklist - [x] I have included a thinking path that traces from project context to this change - [x] I have specified the model used (with version and capability details) - [x] I have checked ROADMAP.md and confirmed this PR does not duplicate planned core work - [x] I have searched GitHub for duplicate or related PRs and linked them above - [x] I have either (a) linked existing issues with `Fixes: #` / `Closes #` / `Refs #` OR (b) described the issue in-PR following the relevant issue template - [x] I have not referenced internal/instance-local Paperclip issues or links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip` URLs) - [x] My branch name describes the change (e.g. `docs/...`, `fix/...`) and contains no internal Paperclip ticket id or instance-derived details - [x] I have run tests locally and they pass - [x] I have added or updated tests where applicable - [x] I have updated relevant documentation to reflect my changes - [x] I have considered and documented any risks above - [x] All Paperclip CI gates are green - [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups - [x] I will address all Greptile and reviewer comments before requesting merge --------- Co-authored-by: Paperclip <noreply@paperclip.ing>	2026-09-01 18:27:00 -07:00
DottaandPaperclip	86ebdf842e	fix(runner): keep agents running when app connections expire (#12670) ... ## Thinking Path > - Paperclip is the open source app people use to manage AI agents for work. > - Agents can receive governed access to connected apps through the runtime MCP gateway. > - A connected app can become unavailable when its sign-in expires or its health state needs attention. > - The native runner treated that optional app state as a fatal runtime setup error. > - One unavailable app could therefore stop all unrelated agent work. > - This pull request removes the fatal dependency and keeps the available app assignment immutable. > - The benefit is that an agent can continue its work while the stream tells the user which app needs reconnection. ## Linked Issues or Issue Description **What happened?** An agent could not start a native run when one assigned app connection was disabled, degraded, failed, or missing its secret. Runtime context creation or MCP delivery threw an error before the agent could do unrelated work. **Expected behavior** The run must continue without the unavailable app. Healthy assigned apps must remain available. The stream must explain which app needs reconnection. A changed assignment must not give a native run new access after its immutable context is captured. **Steps to reproduce** 1. Assign an MCP app connection to a Paperclip Runner agent. 2. Set the connection to a state that needs attention, such as `degraded`. 3. Start a task run for that agent. 4. Observe that native runtime setup fails before the agent starts. **Paperclip version or commit** Reproduced from `ee2a19062`. The branch is rebased on `dda4dff64`. **Deployment mode** Local development from source with embedded Postgres. No matching public issue or open pull request was found in the GitHub search. ## What Changed - Filter unavailable assigned app connections from the immutable native runtime MCP snapshot. - Keep healthy assigned connections and their tools in the snapshot. - Replace the fatal native MCP availability check with an optional stream warning callback. - Withhold MCP delivery when the current assignment digest does not match the captured native context. - Prevent a warning delivery failure from stopping the agent run. - Add regression tests for disabled, degraded, mixed healthy and unavailable, and assignment-drift cases. ## Verification - `pnpm exec vitest run server/src/services/native-runtime/runtime-context.test.ts server/src/__tests__/heartbeat-runtime-mcp-servers.test.ts` passes with 8 tests. - `pnpm -r typecheck` passes. - `pnpm check:token-gates` passes. - `pnpm build` passes. - `pnpm test:run` was attempted. Unrelated workspace runtime and port-exposure tests failed on this macOS host. The same files also failed when run without the changed MCP tests. The changed MCP tests remained green. Clean GitHub CI is the final full-suite check. ## Risks - Low migration risk. This change has no schema or API contract migration. - An unavailable app is absent from the run MCP surface until it is reconnected and a later run captures it again. - Assignment drift fails closed. The agent keeps running, but the changed gateway is not delivered. - This pull request does not auto-block the issue before the agent decides that the app is required. It emits reconnect guidance in the stream. The existing connection-request interaction remains the path for a required app. > For core feature work, check [`ROADMAP.md`](ROADMAP.md) first and discuss it in `#dev` before opening the PR. Feature PRs that overlap with planned core work may need to be redirected — check the roadmap first. See `CONTRIBUTING.md`. ## Model Used - OpenAI Codex, `gpt-5.6-sol`, with high reasoning, repository tools, code execution, and browser automation. The runtime did not expose the context-window size. ## Checklist - [x] I have included a thinking path that traces from project context to this change - [x] I have specified the model used (with version and capability details) - [x] I have checked ROADMAP.md and confirmed this PR does not duplicate planned core work - [x] I have searched GitHub for duplicate or related PRs and linked them above - [x] I have either (a) linked existing issues with `Fixes: #` / `Closes #` / `Refs #` OR (b) described the issue in-PR following the relevant issue template - [x] I have not referenced internal/instance-local Paperclip issues or links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip` URLs) - [x] My branch name describes the change (e.g. `docs/...`, `fix/...`) and contains no internal Paperclip ticket id or instance-derived details - [x] I have run tests locally and they pass - [x] I have added or updated tests where applicable - [x] I have updated relevant documentation to reflect my changes - [x] I have considered and documented any risks above - [ ] All Paperclip CI gates are green - [ ] Greptile is 5/5 with no open P2s, recommendations, or follow-ups - [x] I will address all Greptile and reviewer comments before requesting merge Co-authored-by: Paperclip <noreply@paperclip.ing>	2026-09-01 10:48:18 -05:00
Dotta	ee2a190626	Unify Paperclip Runner experimental controls (#12666) ... ## Thinking Path > - Paperclip is the open source app people use to manage AI agents for work. > - Paperclip Runner is an experimental execution adapter. > - The adapter and its required sandbox ingress had separate settings. > - A user could enable one setting and still have an unusable runner configuration. > - The runtime already makes one durable native or legacy decision for each run. > - This pull request uses that runtime decision for ingress authorization. > - The benefit is one clear opt-in with safe recovery for existing native runs. ## Linked Issues or Issue Description **What existing behavior does this improve?** This improves the experimental settings and transport authorization for Paperclip Runner. **Subsystem affected** Cross-cutting. This change affects the React settings UI, shared settings contracts, adapter utilities, and server runtime selection. **Current behavior** Settings shows separate Paperclip Runner and Runner Preview Ingress controls. A user can enable the runner but leave required sandbox ingress disabled. **Proposed behavior** Settings shows only Paperclip Runner. Its native runtime decision also authorizes provider WebSocket ingress when the execution target requires it. A persisted native run keeps its recovery transport after the setting is disabled. **Reason and benefit** Paperclip Runner is one experimental capability. One opt-in removes an invalid partial configuration and makes the rollout boundary easier to understand. **Breaking changes** The Runner Preview Ingress card is removed. The old `enableRunnerPreviewIngress` key remains accepted in stored settings and managed configuration, but it has no server runtime effect. The public adapter-utils input remains compatible through a deprecated alias. **Additional context** Refs: #12638, #12641, #12656. ## What Changed - Removed the separate Runner Preview Ingress card from Experimental Settings. - Made resolved native runtime selection authorize required provider ingress. - Preserved ingress recovery for persisted native runs after the rollout flag is disabled. - Kept the old settings key and adapter-utils input as deprecated compatibility contracts. - Added focused UI, runtime policy, transport, stored-settings, and managed-config regression tests. - Updated deployment documentation and feature descriptions. ## Verification - GitHub Actions will run typecheck, tests, build, policy, and browser shards. - Focused tests cover the single settings control, runtime authorization, fail-closed transport selection, the deprecated public input, and old managed configuration. - No local tests were run, per the maintainer request to use GitHub Actions for verification. - `git diff --check` passes. ## Risks Low to moderate risk. The effective ingress gate changes from a separate stored flag to the resolved native run decision. Fresh runs still require `enableNativeRunner`. Persisted native runs remain recoverable. Legacy adapters never receive ingress authorization. > For core feature work, check [`ROADMAP.md`](ROADMAP.md) first and discuss it in `#dev` before opening the PR. Feature PRs that overlap with planned core work may need to be redirected — check the roadmap first. See `CONTRIBUTING.md`. ## Model Used OpenAI Codex, GPT-5, with reasoning, tool use, and code execution. ## Checklist - [x] I have included a thinking path that traces from project context to this change - [x] I have specified the model used (with version and capability details) - [x] I have checked ROADMAP.md and confirmed this PR does not duplicate planned core work - [x] I have searched GitHub for duplicate or related PRs and linked them above - [x] I have either (a) linked existing issues with `Fixes: #` / `Closes #` / `Refs #` OR (b) described the issue in-PR following the relevant issue template - [x] I have not referenced internal/instance-local Paperclip issues or links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip` URLs) - [x] My branch name describes the change (e.g. `docs/...`, `fix/...`) and contains no internal Paperclip ticket id or instance-derived details - [ ] I have run tests locally and they pass - [x] I have added or updated tests where applicable - [x] I have updated relevant documentation to reflect my changes - [x] I have considered and documented any risks above - [x] All Paperclip CI gates are green - [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups - [x] I will address all Greptile and reviewer comments before requesting merge	2026-09-01 09:21:23 -05:00
Dotta	1ed29abaa6	fix(runner): harden dormant provider boundaries (#12654) ... ## Thinking Path > - Paperclip is the open source app people use to manage AI agents for work. > - Paperclip Runner currently enables only the Codex production path. > - The package also contains dormant OpenCode and ACPX provider boundaries. > - Dormant boundaries must still fail safe before later activation work. > - Provider children must not inherit unrelated server secrets or host homes. > - Permission defaults must require interaction instead of broad automatic approval. > - This pull request hardens those boundaries without activating them. > - The benefit is a safer base for later provider-specific runnerd work. ## Linked Issues or Issue Description **What existing behavior does this improve?** This improves the inactive OpenCode and ACPX provider boundary in Paperclip Runner. **Subsystem affected** The adapter permission contract, Runner provider environment, and native execution input builder. **Current behavior** Dormant OpenCode code can inherit the full server environment. Its default permission mode allows operations. ACPX also defaults to broad approval. The provider guard can accept inherited object property names. **Proposed behavior** Use exact provider identifiers. Use interactive defaults. Allow only required OpenCode environment keys. Reject invalid proxy permission modes. **Reason and benefit** This reduces accidental authority and secret exposure before future provider activation. **Breaking changes** No production provider is activated. Codex runtime selection and Codex credential-home discovery do not change. Dormant OpenCode and ACPX callers that omit permission modes now receive safer defaults. ## What Changed - Change dormant OpenCode and ACPX permission defaults to interactive modes. - Reject prototype property names as provider identifiers. - Default dormant ACPX input to the qualified Codex agent profile. - Add an explicit OpenCode runner environment allowlist. - Exclude host homes, server credentials, database values, and Node injection options. - Add a fail-closed OpenCode proxy permission parser. - Add focused tests for defaults, filtering, and invalid values. ## Verification GitHub Actions must run: - Adapter utility tests. - Paperclip Runner tests, type checks, and build. - Server native runtime tests. - Repository test, type-check, build, policy, and security gates. No local test command was run. The repository owner requested GitHub-only verification. ## Risks Future OpenCode credential providers must add required variables to the allowlist through review. The safer defaults can pause dormant internal scenarios that relied on implicit broad approval. Production Codex behavior is unchanged. ## Model Used OpenAI Codex with the GPT-5 agent model. The work used high reasoning, repository inspection, tool use, and parallel security review. ## Checklist - [x] I have included a thinking path that traces from project context to this change - [x] I have specified the model used (with version and capability details) - [x] I have checked ROADMAP.md and confirmed this PR does not duplicate planned core work - [x] I have searched GitHub for duplicate or related PRs and linked them above - [x] I have either (a) linked existing issues with `Fixes: #` / `Closes #` / `Refs #` OR (b) described the issue in-PR following the relevant issue template - [x] I have not referenced internal/instance-local Paperclip issues or links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip` URLs) - [x] My branch name describes the change (e.g. `docs/...`, `fix/...`) and contains no internal Paperclip ticket id or instance-derived details - [ ] I have run tests locally and they pass - [x] I have added or updated tests where applicable - [x] I have updated relevant documentation to reflect my changes - [x] I have considered and documented any risks above - [ ] All Paperclip CI gates are green - [ ] Greptile is 5/5 with no open P2s, recommendations, or follow-ups - [x] I will address all Greptile and reviewer comments before requesting merge	2026-09-01 04:46:36 -05:00
Dotta	131f5c4065	feat(runner): add administration and observability (#12641) ... ## Thinking Path > - Paperclip is the open source app people use to manage AI agents for work. > - Administrators need bounded controls for experimental native execution. > - The lower stack adds remote Codex execution and the task workspace. > - Operators need to configure Codex safely and inspect provider traces. > - Unsupported providers must not appear as runnable choices. > - This pull request adds Codex-only administration and observability. > - The benefit is a default-off operational surface for production diagnosis. ## Linked Issues or Issue Description Refs #12640. Refs #12616. Refs #12352. **Subsystem affected** Agent configuration, instance experimental settings, run ledger, provider trace inspector, and administrator actions. **Problem or motivation** The native runner lacks one safe operator surface for Codex permissions, lifecycle, raw trace capture, and run inspection. The integration branch also contains provider choices that the production backend cannot execute yet. **Proposed solution** Expose only the qualified Codex controls. Keep Paperclip Developer Mode and runner preview ingress off by default. Gate raw trace actions by administrator access and existing trace authorization. **Alternatives considered** Exposing unfinished providers would create configurations that fail at runtime. Always-on tracing would increase sensitive data and storage risk. **Roadmap alignment** This work supports governed Cloud and Sandbox agents and production diagnostics. ## Stack - Base PR: #12640. - Lower PRs: #12639 and #12638. - This PR contains only its 54-file administration and observability delta. - This is the final feature PR in the Codex production stack. ## What Changed - Added Codex-only Paperclip Runner permission and lifecycle controls. - Added bounded warm idle configuration. - Kept the provider field fixed to Codex. - Added administrator-only one-run raw trace requests. - Added a persistent future-run raw trace toggle. - Added trace status, metadata, ledger, and canonical runner inspection. - Added JSON-RPC request-origin grouping and finalization lineage. - Restored the stateful PRP transcript parser and focused projection tests required by trace inspection. - Added default-off Paperclip Developer Mode. - Added Honeycomb run links for authorized developer mode. - Disabled the legacy operational skill for `paperclip_runner`. - Did not expose OpenCode, ACPX, Pi, Claude Managed, or AWS runner choices. - Did not change migrations, workflows, dependencies, or `pnpm-lock.yaml`. ## Verification - GitHub Actions will run UI tests, server tests, repository typecheck, build, browser tests, security, and policy gates. - Tests cover Codex configuration defaults and bounds, administrator trace actions, persistent settings, ledger inspection, trace lineage, and Honeycomb links. - Existing server trace authorization and retention tests remain the backend authority. - Local tests were not run. The requested verification policy uses GitHub Actions for this series. - `git diff --check runner/task-workspace-experience...HEAD` passes. - The delta contains 54 files. ## Risks - Raw provider traces can contain sensitive provider data. - Existing server authorization controls access, reveal, download, retention, and deletion. - The UI gates trace actions by administrator access and developer mode. - All new instance settings remain off by default. - Fresh Paperclip Runner configuration remains Codex-only. - Direct adapters and legacy task behavior do not change in this PR. > For core feature work, check [`ROADMAP.md`](ROADMAP.md) first and discuss it in `#dev` before opening the PR. Feature PRs that overlap with planned core work may need to be redirected — check the roadmap first. See `CONTRIBUTING.md`. ## Model Used OpenAI Codex with GPT-5.6. The work used high-reasoning agent mode, repository tools, GitHub tools, and parallel code-audit agents. ## Checklist - [x] I have included a thinking path that traces from project context to this change - [x] I have specified the model used (with version and capability details) - [x] I have checked ROADMAP.md and confirmed this PR does not duplicate planned core work - [x] I have searched GitHub for duplicate or related PRs and linked them above - [x] I have either (a) linked existing issues with Fixes: / Closes / Refs OR (b) described the issue in-PR following the relevant issue template - [x] I have not referenced internal or instance-local Paperclip issues or links - [x] My branch name describes the change and contains no internal Paperclip ticket id - [ ] I have run tests locally and they pass - [x] I have added or updated tests where applicable - [x] I have updated relevant documentation to reflect my changes - [x] I have considered and documented risks above - [ ] All Paperclip CI gates are green - [ ] Greptile is 5/5 with no open P2s, recommendations, or follow-ups - [x] I will address all Greptile and reviewer comments before requesting merge	2026-09-01 03:41:23 -05:00
Dotta	0a422fda52	feat(runner): add remote execution substrate (#12638) ... ## Thinking Path > - Paperclip is the open source app people use to manage AI agents for work. > - Paperclip Runner gives native runs a durable and governed execution path. > - The current native path runs on the control-plane host. > - Remote environments need an authenticated execution-target contract. > - The contract must not change direct adapters or enable new runtimes by default. > - This pull request adds the remote execution substrate and Daytona ingress. > - The benefit is a bounded base for later remote runner transport work. ## Linked Issues or Issue Description Refs #12616. Refs #12352. **Subsystem affected** Cross-cutting. This change touches runner transport, server orchestration, plugin contracts, and shared settings. **Problem or motivation** Native execution cannot resolve an authenticated runner ingress through a remote environment. The server also lacks one provider-neutral contract for remote execution targets. **Proposed solution** Add a default-off runner preview ingress capability. Add transport-neutral runner connectivity. Add remote execution target and lifecycle handling. Add a Daytona ingress implementation with redacted credentials. **Alternatives considered** A provider-specific server path would duplicate orchestration and authorization. A public endpoint without an environment contract would weaken the trust boundary. **Roadmap alignment** This work supports the Cloud and Sandbox agents milestone. It also supports self-healing runs and governed tool access. ## What Changed - Added execution-target traits for local, SSH, and sandbox environments. - Added plugin RPC contracts for runner ingress endpoints. - Added authenticated Daytona preview ingress. - Added transport-neutral PRP outbound connections. - Added remote runner artifact verification and fail-closed provider selection. - Added bounded native session resume, cancellation, and lifecycle recovery. - Preserved Codex-only selection for fresh experimental runner starts. - Preserved all direct adapter execution and finalization paths. - Removed stale Pi provider-pack requirements that security review rejected. - Kept the rollout controls off by default. - Did not change pnpm-lock.yaml, Cargo, database migrations, or GitHub workflows. ## Verification - GitHub Actions will run the repository test, typecheck, build, security, and policy gates. - Focused tests cover ingress validation, redaction, execution targets, remote lifecycle, cancellation, resume, and legacy adapter selection. - Local tests were not run. The requested verification policy uses GitHub Actions for this series. - `git diff --check origin/master...HEAD` passes. - The diff contains 52 files. ## Risks - Remote execution crosses a trust boundary. - The implementation validates target capabilities, artifact digests, provider-pack pins, and connection metadata. - The feature remains default-off. - Fresh native selection remains Codex-only. - Existing direct adapters remain on the legacy path. - This PR does not yet make remote Codex runnable. The next PR adds the Rust WSS and TLS transport. ## Model Used OpenAI Codex with GPT-5.6. The work used high-reasoning agent mode, repository tools, GitHub tools, and parallel code-audit agents. ## Checklist - [x] I have included a thinking path that traces from project context to this change - [x] I have specified the model used (with version and capability details) - [x] I have checked ROADMAP.md and confirmed this PR does not duplicate planned core work - [x] I have searched GitHub for duplicate or related PRs and linked them above - [x] I have either (a) linked existing issues with Fixes: / Closes / Refs OR (b) described the issue in-PR following the relevant issue template - [x] I have not referenced internal or instance-local Paperclip issues or links - [x] My branch name describes the change and contains no internal Paperclip ticket id - [ ] I have run tests locally and they pass - [x] I have added or updated tests where applicable - [x] I have updated relevant documentation to reflect my changes - [x] I have considered and documented risks above - [ ] All Paperclip CI gates are green - [ ] Greptile is 5/5 with no open P2s, recommendations, or follow-ups - [x] I will address all Greptile and reviewer comments before requesting merge	2026-09-01 01:29:06 -05:00
Dotta	51ad751e0b	feat(runner): integrate Codex native execution (#12616) ... ## Thinking Path > - Paperclip is the open source control plane for teams of AI agents. > - Agent runs currently use direct adapters and their established finalization paths. > - The new runner package needs one production integration before it can execute a real provider through the server. > - That integration must not change direct adapters or expose unsupported providers. > - The rollout must also preserve native runs that were already recorded when the feature flag changes. > - This pull request adds a default-off, Codex-only native execution path and its authority boundary. > - The benefit is a recoverable production vertical slice with explicit compatibility guards. ## Linked Issues or Issue Description **Subsystem affected** Cross-cutting server orchestration and adapter selection. **Problem or motivation** The runner package exists, but the server cannot yet start and recover a governed Codex run through it. A careless integration could also route existing direct adapters into the native runtime or lose cancellation and finalization state. **Proposed solution** Add a hidden `paperclip_runner` adapter for Codex. Keep it behind the default-off instance flag. Bind native execution, resume, cancellation, semantic tool authority, and finalization to the recorded company, issue, run, and coordinator identities. Leave every direct adapter on its existing path. **Alternatives considered** A multi-provider launch was rejected because only Codex has the complete production bridge in this series. Replacing direct adapter execution was rejected because the runner remains experimental. **Roadmap alignment** This work supports governed tool access, action attribution, and self-healing runs. It keeps the integration narrow and default-off. ## What Changed - Add the Codex-only native session executor and persisted resumption path. - Add run-scoped semantic tool projection, authorization, receipts, and idempotency. - Add audited native cancellation with durable issue and coordinator binding. - Add result fencing so a recorded result cannot reacquire the provider and run twice. - Reject fresh runner starts when the rollout flag is off while preserving recorded native recovery. - Keep direct adapters outside native status, cancellation, record creation, and finalization. - Add focused conformance, recovery, cancellation, status, portability, and compatibility coverage. ## Verification - GitHub Actions is the authoritative test environment for this large stack. - The PR policy and lightweight stack checks run while this is a middle PR. - The full required suite runs when this PR becomes the lowest unmerged or top PR. - Greptile will review this exact delta after the branch is pushed. ## Risks - The main risk is routing a legacy adapter into native execution. Runtime selection and heartbeat tests cover that boundary. - The next risk is stale or cross-company cancellation. Durable binding checks and transactional audit persistence cover it. - The adapter remains hidden and default-off. Only Codex is admitted. - There are no database migration, lockfile, or GitHub workflow changes in this PR. ## Stack 1. [Runner package, SDK, and developer tools](https://github.com/paperclipai/paperclip/pull/12608) 2. This PR: Codex production server integration 3. [Provider-neutral task-thread UI](https://github.com/paperclipai/paperclip/pull/12617) ## Model Used OpenAI Codex with GPT-5, extended reasoning, repository tools, and parallel review agents. ## Checklist - [x] I have included a thinking path that traces from project context to this change - [x] I have specified the model used (with version and capability details) - [x] I have checked ROADMAP.md and confirmed this PR does not duplicate planned core work - [x] I have searched GitHub for duplicate or related PRs and linked them above - [x] I have either (a) linked existing issues with `Fixes: #` / `Closes #` / `Refs #` OR (b) described the issue in-PR following the relevant issue template - [x] I have not referenced internal/instance-local Paperclip issues or links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip` URLs) - [x] My branch name describes the change (e.g. `docs/...`, `fix/...`) and contains no internal Paperclip ticket id or instance-derived details - [ ] I have run tests locally and they pass - [x] I have added or updated tests where applicable - [x] I have updated relevant documentation to reflect my changes - [x] I have considered and documented any risks above - [ ] All Paperclip CI gates are green - [ ] Greptile is 5/5 with no open P2s, recommendations, or follow-ups - [x] I will address all Greptile and reviewer comments before requesting merge	2026-08-31 22:51:17 -05:00
DottaandDev Agent	25cf079ec5	feat(runner): add Codex-native application integration (#12591) ... ## Thinking Path > - Paperclip is the open source app people use to manage AI agents for work. > - The runner package is useful only when the application can start, observe, and recover a native Codex run safely. > - Existing direct adapters must keep their current execution and finalization paths. > - The application boundary therefore needs additive persistence, authorization, coordination, and recovery behind an explicit experimental adapter. > - This pull request adds that Codex-only boundary without activating generalized providers, remote environments, or the later task/SDK surfaces. ## Linked Issues or Issue Description **Subsystem affected** Shared contracts, database persistence, adapter utilities, server native-runtime services, and the experimental Paperclip Runner adapter. **Problem or motivation** The already-landed runner package has a qualified Codex path, but the application needs durable native-run state, guarded runtime selection, authenticated coordination, tool security, finalization, and recovery before the experimental adapter can be exercised safely. **Proposed solution** Add a Codex-only `paperclip_runner` application path behind the existing default-off native-runner setting. Bind native state and coordination to company/run identity, preserve persisted-run recovery, and leave every direct adapter on its existing legacy execution path. **Alternatives considered** The earlier stack boundary introduced a generalized executor and remote-environment lifecycle here. That made this PR depend on implementations in higher PRs and changed reusable sandbox behavior globally. Those pieces are now deferred together to #12592. **Roadmap alignment** ROADMAP.md does not list a conflicting native-runner integration project. This change adds the application boundary for the existing Runner architecture. ## What Changed - Added native run/result/finalization/provider-trace persistence, shared validators, and idempotent migration/replay coverage. - Added guarded Codex-only runtime selection, authenticated PRP coordination, recovery, finalization, and interaction services. - Added run/company-bound tool-gateway authorization, credential redaction, SSRF protections, and replay-safe behavior. - Added the explicit `paperclip_runner` adapter behind the default-off rollout setting. - Preserved legacy answered-question wake projection and direct-adapter execution/finalization paths. - Hardened cancellation so only owned in-memory child processes are signaled; persisted recycled PIDs/process groups are never trusted. - Retained the narrow Claude ACPX isolated-context security follow-up discovered after #12590. - Deferred the generalized executor, provider ingress, remote lifecycle, SDK/lab/eval work, release-process changes, and lockfile. ## Verification - Changed-file delta against `master`: 133 files. - GitHub Actions is the authoritative verification environment for this PR. - Full CI, security, and Greptile review will run on this lowest unmerged stack PR. - Local tests/build/typecheck were not run because this checkout is resource constrained. - Static diff/reference checks pass, and `pnpm-lock.yaml` is unchanged. ## Risks - This touches central heartbeat and agent-route code, so legacy compatibility is the primary risk. - Runtime selection remains Codex-only and explicit; direct Codex, Claude, OpenCode, process, HTTP, and plugin adapters remain on their existing paths. - Fresh native starts fail closed while the rollout flag is off; persisted native records remain readable and recoverable. - Cancellation, company/run binding, tool calls, status decisions, and completion writes are guarded or replay-safe. > For core feature work, check [ROADMAP.md](ROADMAP.md) first and discuss it in #dev before opening the PR. Feature PRs that overlap with planned core work may need to be redirected. ## Model Used OpenAI Codex, GPT-5.6, with repository tools, code execution, and parallel agent review. ## Checklist - [x] I have included a thinking path that traces from project context to this change - [x] I have specified the model used (with version and capability details) - [x] I have checked ROADMAP.md and confirmed this PR does not duplicate planned core work - [x] I have searched GitHub for duplicate or related PRs and linked them above - [x] I have either linked existing issues or described the issue in-PR following the relevant issue template - [x] I have not referenced internal or instance-local Paperclip issues or links - [x] My branch name describes the change and contains no internal Paperclip ticket id - [ ] I have run tests locally and they pass — GitHub Actions is authoritative for this resource-constrained checkout - [x] I have added or updated tests where applicable - [x] I have updated relevant documentation to reflect my changes - [x] I have considered and documented risks above - [ ] All Paperclip CI and security gates are green - [ ] Greptile is 5/5 with no open actionable findings - [x] I will address all Greptile and reviewer comments before merge ## Stack - Position: 3 of 5 overall; lowest of 3 currently unmerged - Base: `master` - Previous: [#12590](https://github.com/paperclipai/paperclip/pull/12590), qualified Claude ACPX runtime — merged - Next: [#12592](https://github.com/paperclipai/paperclip/pull/12592), generalized Codex executor, task experience, and developer SDKs --------- Co-authored-by: Dev Agent <dev@paperclip.ing>	2026-08-31 14:38:38 -05:00
Dotta	7a3abb88a0	feat(runner): authorize server Codex tools (#12385) ... ## Thinking Path > - Paperclip is the open source app people use to manage AI agents for work. > - The hidden native coordinator already computes a run-scoped semantic tool projection. > - The durable Codex backend now accepts and enforces that projection. > - The server did not include the projection in its `run.prepare` command. > - Codex therefore received no production semantic tools even when the server authorized them. > - This pull request adds the deterministic wire projection and sends it to runnerd. > - The benefit is one fail-closed authorization catalog from the server through Codex. ## Linked Issues or Issue Description Refs #12384 **What existing behavior does this improve?** This improves the existing flagged Paperclip Runner Codex path. **Current behavior** The server creates a run-scoped list of authorized read tools. It does not pass that list to runnerd, so the production Codex session starts with no tools. **Proposed behavior** The server maps the authorized definitions to the versioned runner contract. It computes a cross-language catalog digest. It includes that immutable contract in `run.prepare`. **Reason and benefit** Runnerd and the server now enforce the same catalog identity. Unknown, duplicate, changed, or malformed tool contracts fail before Codex can use them. **Breaking changes** None. Direct adapters are unchanged. A native run with an empty server projection still starts with no dynamic tools. ## What Changed - Add a deterministic semantic-definition to runner-authorization projection. - Match the Rust canonical digest with a shared test vector. - Include the server coordinator projection in the native Codex `run.prepare` command. - Extend the native Codex vertical slice to require and execute a semantic tool. - Verify the production prepare payload in a host-independent server test. ## Verification - `pnpm --filter @paperclipai/paperclip-runner test:typescript` (354 tests pass) - `pnpm --filter @paperclipai/server exec vitest run src/services/native-runtime/native-codex-runner.test.ts` - `pnpm --filter @paperclipai/server typecheck` - `pnpm -r typecheck` - `pnpm build` - The embedded-Postgres vertical slice is present for CI. This local host reports that embedded Postgres is unavailable, so Vitest skips that host-dependent test locally. - Confirmed that the PR changes 7 files against `runner-codex-durable-tools`. - Confirmed that `pnpm-lock.yaml` is unchanged. ## Risks The main risk is a catalog digest mismatch between TypeScript and Rust. Both implementations use canonical JSON. They share the same fixed digest vector. Runnerd also recomputes the digest and rejects a mismatch. The rollout flag and the existing native runtime selection rules remain unchanged. ## Model Used OpenAI Codex with GPT-5 and repository tool use. ## Checklist - [x] I have included a thinking path that traces from project context to this change - [x] I have specified the model used (with version and capability details) - [x] I have checked ROADMAP.md and confirmed this PR does not duplicate planned core work - [x] I have searched GitHub for duplicate or related PRs and linked them above - [x] I have either (a) linked existing issues with `Fixes: #` / `Closes #` / `Refs #` OR (b) described the issue in-PR following the relevant issue template - [x] I have not referenced internal/instance-local Paperclip issues or links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip` URLs) - [x] My branch name describes the change (e.g. `docs/...`, `fix/...`) and contains no internal Paperclip ticket id or instance-derived details - [x] I have run tests locally and they pass - [x] I have added or updated tests where applicable - [x] I have updated relevant documentation to reflect my changes - [x] I have considered and documented any risks above - [ ] All Paperclip CI gates are green - [ ] Greptile is 5/5 with no open P2s, recommendations, or follow-ups - [x] I will address all Greptile and reviewer comments before requesting merge	2026-08-30 11:43:34 -05:00
Dotta	bc9ba7cd26	feat(runner): project native runs into task threads (#12321) ... ## Thinking Path > - Paperclip is the open source app people use to manage AI agents for work. > - The experimental Paperclip Runner can execute a guarded Codex run and persist provider-neutral events. > - The task page still reads direct-adapter transcripts and cannot present those native events. > - Structured runner questions must also use the existing task interaction experience. > - Runtime selection must use the persisted run mode, not an adapter name or a current feature flag. > - This pull request projects native events and questions into the existing task thread. > - Direct adapters keep their existing transcript, composer, interaction, and finalization paths. > - The benefit is a complete native Codex task thread without a behavior change for existing adapters. ## Linked Issues or Issue Description Refs #12202. This pull request replaces that stale implementation on current `master`. **What happened?** The server persists native runner events and structured input requests. The task page only consumes direct-adapter transcripts. A native run therefore cannot present a complete transcript, usage, or question flow through the normal task experience. **Expected behavior** Native runs project persisted provider-neutral events into the existing task thread. Native structured questions use the existing interaction card. Direct adapters retain their current behavior. **Steps to reproduce** 1. Enable the experimental runner. 2. Start a native Codex run that emits progress, usage, a structured question, and a final reply. 3. Open the task page. 4. Observe that the direct-adapter transcript path cannot project the native event records. **Paperclip version or commit** `master` at `67f9867bc`. ## What Changed - Add the canonical structured-question validator and shared contract exports. - Materialize native input requests as existing task interactions. - Validate native answers and deliver them through the durable question-response receipt. - Resume the original PRP request with an idempotent `request.resolve` command. - Project native messages, tool activity, cumulative usage, and final replies into the existing transcript model. - Propagate persisted `runtimeMode` to the task page and select native handling only for `runtimeMode: "native"`. - Expire pending interactions through the shared issue service on every terminal transition, including decisions, stalled reviews, tree control, and pipeline retry cleanup. - Queue native run cancellation while a transaction is open and execute it only after the owning transaction commits. - Keep nonterminal and non-runner issue paths on their existing service call shapes and behavior. ## Verification - `pnpm --filter @paperclipai/server typecheck` — passed, including the Rust runner release build and protocol/catalog drift gates. - Focused native-thread and lifecycle suites — 18 files and 481 tests passed during review. - `issue-execution-policy-routes.test.ts` — 19/19 passed after the final transactional-queue expectation update. - `issue-agent-mutation-ownership-routes.test.ts` — 87/87 passed in the final isolated compatibility rerun. - GitHub Actions — policy, build, canary, typecheck/release registry, 5 serialized server shards, 8 general-test shards, 3 browser shards, and both aggregate gates passed on `7793f3193`. - Security — Snyk, Socket Project Report, Socket PR Alerts, and Superagent passed. - Greptile — 5/5 on `7793f3193`; all actionable review threads resolved. - `git diff --check` — passed. - Diff against `master`: 44 files. ## Compatibility Boundary - Native transcript polling only runs when the persisted run reports `runtimeMode: "native"`. - Missing or legacy runtime modes continue through `useLiveRunTranscripts`. - Legacy questions keep the existing optional free-text choice. - Native closed select sets can suppress that legacy fallback. - Terminal cleanup uses the same issue service for native and legacy interactions; only a bound native question schedules a native run cancellation. - Native cancellation happens after transaction commit, so failed or rolled-back writes do not cancel a still-valid run. - The durable delivery service checks the original native request before it considers a continuation run. - This pull request adds no migration, dependency, workflow, manifest, or lockfile change. ## Risks The main risk is routing a direct-adapter task through native handling or changing terminal issue behavior. The implementation selects the native path only from persisted runtime facts, retains the existing nonterminal call shape, and schedules native cancellation only for a validated bound native question after commit. Focused and repository-wide tests cover both paths. Native requests remain bound to the company, issue, run, and agent; answers are validated, durable, and idempotent across reconnects. ## Model Used OpenAI Codex, GPT-5 family. The client does not expose the exact deployment ID or context window. Agentic reasoning, tool use, and code execution were enabled. ## Checklist - [x] I have included a thinking path that traces from project context to this change - [x] I have specified the model used (with version and capability details) - [x] I have checked ROADMAP.md and confirmed this PR does not duplicate planned core work - [x] I have searched GitHub for duplicate or related PRs and linked them above - [x] I have either (a) linked existing issues with `Fixes: #` / `Closes #` / `Refs #` OR (b) described the issue in-PR following the relevant issue template - [x] I have not referenced internal/instance-local Paperclip issues or links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip` URLs) - [x] My branch name describes the change and contains no internal Paperclip ticket id or instance-derived details - [x] I have run the affected local tests and they pass - [x] I have added or updated tests where applicable - [x] I have updated the compatibility notes for this change - [x] I have considered and documented risks above - [x] All Paperclip CI gates are green - [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups - [x] I addressed all Greptile and reviewer comments before requesting merge	2026-08-29 19:26:20 -05:00
Dotta	397de98193	feat(runner): add flagged Codex execution adapter (#12188) ... ## Thinking Path > - Paperclip is the open source app people use to manage AI agents for work. > - The Paperclip Runner now has protocol, provider, tool, package, persistence, and hidden server boundaries. > - The server still cannot select that path for a real agent heartbeat. > - A new runtime must not change any existing direct adapter. > - An experimental runtime must fail closed when its rollout flag is off. > - This pull request adds one guarded Codex vertical slice through runnerd. > - The benefit is a production-built runner path that users cannot start by default. ## Linked Issues or Issue Description Refs #11962 Refs #12111 Refs #12169 Refs #12176 **Subsystem affected** Cross-cutting. The change affects the runner package, server orchestration, shared settings, and adapter configuration UI. **Problem or motivation** The hidden PRP coordinator cannot execute a real heartbeat. The application also needs an explicit rollout boundary before it can expose the experimental runner. Existing direct adapters must keep their current execution and finalization behavior. **Proposed solution** Add `paperclip_runner` as a Codex-only adapter behind the default-off `enableNativeRunner` instance flag. Select the native runtime only for that adapter. Persist the run binding before runnerd starts. Wait for the durable PRP result and terminal event. Resume the real Codex provider thread on later heartbeats. Keep persisted native runs readable and recoverable after the flag changes. **Alternatives considered** The server could route `codex_local` through runnerd. That option would change an existing adapter and weaken rollback safety. The server could expose all providers now. That option would add unreviewed provider behavior. The build could depend on a prebuilt runner binary. That option would make source builds architecture-dependent and difficult to verify. **Roadmap alignment** This work supports the shipped enforced-outcomes, governed-tool, and self-healing-run milestones. It does not add a new roadmap surface. It is the guarded execution step after the merged hidden runner boundaries. **Additional context** This is the next replacement for the closed large runner pull request. Task-thread presentation remains a separate follow-up so this change can preserve the current direct-adapter UI. ## What Changed - Add `paperclip_runner` as an explicit Codex-only adapter. - Add the default-off `enableNativeRunner` instance flag. - Reject fresh create, hire, import, switch, and execution requests while the flag is off. - Allow edits to persisted runner agents while the flag is off. - Recover an already persisted native run even after the flag is disabled. - Keep every built-in direct adapter on its existing runtime path. - Persist an immutable native run binding and revisioned completion contract before runnerd starts. - Execute server to PRP to runnerd to Codex to server through the hidden coordinator. - Validate the durable result against the terminal event and exact completion criteria before finalization. - Preserve the Codex provider thread ID and use `thread/resume` on the next heartbeat. - Strip unsupported Codex configuration fields from the experimental adapter. - Build a target-native release runner binary from source and vendor it into the server distribution. - Install Rust only in the Docker build stage. Do not add a workflow or lockfile change. - Stop the runner process group on completion, cancellation, and forced shutdown. ## Verification - Run `pnpm --filter @paperclipai/paperclip-runner check:all`. All 69 TypeScript tests and 58 Rust tests pass. Protocol, conformance, replay, formatting, and generated-file checks pass. - Run the 12 focused adapter, settings, runtime-selection, coordinator, direct-isolation, and real Codex integration test files. All 186 tests pass. - The real integration test uses PostgreSQL, HTTP, WebSocket, runnerd, and a fake Codex app server. It proves one `thread/start` followed by one `thread/resume`. - Run `pnpm -r typecheck`. - Run `pnpm build`. - Run `pnpm check:token-gates`. - Build the Docker `build` target from a clean context. Confirm that the server distribution contains an executable `paperclip-runnerd` built with Debian Rust 1.85. - Start the server through the source-mode tsx entry point with the package `dist` directory absent. Confirm the vendor shim resolves source exports and the server boots. - Run `pnpm test:run` twice. On this macOS host, 405 files pass and 1 file skips. Eight untouched workspace and loopback tests fail because macOS resolves `/tmp` and `/var` through `/private` and because PID-derived test ports exceed 65535. Linux CI must pass the full suite. - Confirm that the diff contains 52 files. Confirm that it contains no `.github` or `pnpm-lock.yaml` change. ## Risks - The feature flag is off by default. A fresh native start fails with a stable error while the flag is off. - A persisted native run remains recoverable after the flag changes. This prevents rollout changes from corrupting recorded work. - Only local Codex execution is accepted. Other providers and remote work modes fail closed. - Existing direct adapters do not start runnerd, create native rows, use native status arbitration, or enter native finalization. - The runner receives its one-use bootstrap ticket through the child environment. The server does not put the ticket in command arguments or logs. - The server validates the company, task, agent, run, runner, session, completion contract, result, and terminal binding before it accepts completion. - The build compiles a target-native Rust binary. Cross-platform release packaging remains a later concern. Source builds and Docker builds compile for their current target. - Docker needs enough build memory for the existing server TypeScript compile. The Docker build stage sets a 4 GB V8 heap limit. > For core feature work, check [`ROADMAP.md`](ROADMAP.md) first and discuss it in `#dev` before opening the PR. Feature PRs that overlap with planned core work may need to be redirected — check the roadmap first. See `CONTRIBUTING.md`. ## Model Used - OpenAI Codex with GPT-5. The exact deployment ID and context-window size are not exposed. The model used agentic reasoning, repository tools, code execution, and test execution. ## Checklist - [x] I have included a thinking path that traces from project context to this change - [x] I have specified the model used (with version and capability details) - [x] I have checked ROADMAP.md and confirmed this PR does not duplicate planned core work - [x] I have searched GitHub for duplicate or related PRs and linked them above - [x] I have either (a) linked existing issues with `Fixes: #` / `Closes #` / `Refs #` OR (b) described the issue in-PR following the relevant issue template - [x] I have not referenced internal/instance-local Paperclip issues or links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip` URLs) - [x] My branch name describes the change (e.g. `docs/...`, `fix/...`) and contains no internal Paperclip ticket id or instance-derived details - [x] I have run tests locally and applicable tests pass - [x] I have added or updated tests where applicable - [x] I have updated relevant documentation to reflect my changes - [x] I have considered and documented any risks above - [x] All Paperclip CI gates are green - [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups - [x] I will address all Greptile and reviewer comments before requesting merge	2026-08-25 16:03:41 -05:00
Dotta	9964b034bb	feat(runner): add hidden server PRP coordinator (#12176) ... ## Thinking Path > - Paperclip is the open source app people use to manage AI agents for work. > - The Paperclip Runner needs a narrow server trust boundary before an adapter can start it. > - The package has durable runner transport, but the server does not host or authorize that transport. > - Native persistence exists, but no writer connects PRP events to those records. > - A direct adapter must not enter this path by accident. > - This pull request adds a hidden, run-bound PRP server coordinator. > - The benefit is a recoverable server boundary that remains unavailable to normal execution. ## Linked Issues or Issue Description Refs #11962 Refs #12129 Refs #12169 **Subsystem affected** Cross-cutting. The change affects the runner package and server orchestration. **Problem or motivation** The server cannot authenticate runnerd, commit PRP events before ACK, authorize semantic tools, or enter native finalization from a durable runner result. The application must have this hidden boundary before a guarded adapter can use the runner. **Proposed solution** Add an authenticated PRP WebSocket authority and register it only for one exact persisted native Codex run. Bind each connection and event to the company, issue, agent, run, runner, session, turn, item, and verified runner identity. Commit each event before its cumulative ACK. Project only authorized same-task read tools. Rebuild the accepted result and finalization record from durable result and terminal events. **Alternatives considered** The server could expose a broad runner API key or route semantic calls through existing adapter endpoints. Those options grant too much authority and weaken replay recovery. The server could also add the user-facing adapter in this pull request. That option would mix rollout selection with the transport trust boundary and make legacy compatibility harder to review. **Roadmap alignment** This work supports the shipped enforced-outcomes, governed-tool, and self-healing-run milestones. It does not add a new roadmap surface. ## What Changed - Add the durable PRP server authority with one-use bootstrap tickets, reconnect leases, encrypted frames, bounded state, cumulative ACKs, and idempotent commands. - Add `/api/runner/v1/connect/:runId`. Derive its `ws://` or `wss://` URL from the configured Paperclip API URL. - Register one authority only after the coordinator verifies the complete native Codex run binding. - Commit validated PRP events to `heartbeat_run_events` before ACK. Reject source gaps and conflicting replays. - Rebuild accepted results and finalization records from durable result and terminal events. Enforce finalization owner leases and retry times. - Project five same-task read operations. Recheck run, agent, task, and company authority for each call. - Keep the route hidden. No adapter selects this coordinator, and no code starts runnerd. - Vendor the compiled runner TypeScript runtime into the server package while keeping the workspace package development-only for the server. - Document the package, database writer, run-log payload, and credential exclusions. ## Verification - Run `pnpm --filter @paperclipai/paperclip-runner check:all`. All TypeScript protocol checks and 69 Vitest tests pass, including commit-before-ACK crash recovery. All 43 Rust unit tests and 13 Rust integration tests pass. Conformance and replay parity pass. - Run the focused server WebSocket, coordinator, package-build, and startup-wiring suites. All 26 tests pass, including a clean-checkout reproduction with the runner `dist` directory absent. - Run `pnpm -r typecheck`. - Run `pnpm test:run`. - Run `pnpm build`. - Confirm that the diff contains 19 files. Confirm that it contains no workflow or `pnpm-lock.yaml` change. ## Risks - The server installs the WebSocket route at startup. An unregistered or malformed run path fails closed and creates no native record. - Bootstrap tickets are one use. The private state directory uses mode `0700`, and the state file uses mode `0600`. The file stores derived authentication verifiers and never stores raw tickets or lease tokens. - The journal has explicit frame, command, event-window, and file-size bounds. A bound violation closes the runner connection or rejects the command. - A runner event reaches the database before its ACK. A crash between event commit and ACK causes a byte-equivalent replay, not a second logical effect. - The coordinator accepts only an existing queued or running native Codex row with exact company, task, agent, runner, session, and completion-contract ownership. - Existing direct adapters do not call this service. They keep their current execution, transcript, result, and finalization paths. - The server has no production dependency on the private runner package. Its build copies the compiled runtime into `server/dist`; the workspace link is development-only. This adds no external package and does not change the lockfile. > For core feature work, check [`ROADMAP.md`](ROADMAP.md) first and discuss it in `#dev` before opening the PR. Feature PRs that overlap with planned core work may need to be redirected — check the roadmap first. See `CONTRIBUTING.md`. ## Model Used - OpenAI Codex with GPT-5. The exact deployment ID and context-window size are not exposed. The model used agentic reasoning, repository tools, code execution, and test execution. ## Checklist - [x] I have included a thinking path that traces from project context to this change - [x] I have specified the model used (with version and capability details) - [x] I have checked ROADMAP.md and confirmed this PR does not duplicate planned core work - [x] I have searched GitHub for duplicate or related PRs and linked them above - [x] I have either (a) linked existing issues with `Fixes: #` / `Closes #` / `Refs #` OR (b) described the issue in-PR following the relevant issue template - [x] I have not referenced internal/instance-local Paperclip issues or links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip` URLs) - [x] My branch name describes the change (e.g. `docs/...`, `fix/...`) and contains no internal Paperclip ticket id or instance-derived details - [x] I have run tests locally and they pass - [x] I have added or updated tests where applicable - [x] I have updated relevant documentation to reflect my changes - [x] I have considered and documented any risks above - [x] All Paperclip CI gates are green - [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups - [x] I will address all Greptile and reviewer comments before requesting merge	2026-08-25 14:17:14 -05:00