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9ef434fe79 |
docs: expose feature map IDs and add a recipe index (#16987)
## Thinking Path > - Paperclip is the open source app people use to manage AI agents for work. > - Its feature map describes user journeys and their verification paths. > - The map already defines feature IDs and full capability IDs. > - The README and child pages did not show those IDs consistently. > - Readers need those IDs to connect issues, tests, stories, and evidence. > - This pull request adds a recipe index and displays the existing IDs. > - The benefit is clear references across the product and agent access maps. ## Linked Issues or Issue Description **Issue type** Missing documentation. **Where is the issue?** `maps/feature-map/README.md`, the child recipes, and their agent access companions. **What's wrong?** The README sends readers to Storybook to browse features. Child pages show local keys, such as `installation`, without the full `plugins/installation` ID. Readers must inspect the generator to find the full reference. **Suggested fix** List recipe links and existing IDs in the README. Show each feature ID and full capability ID in its child pages. Explain capability IDs and entry-point references. Keep the current keys and anchors. Related work: Refs #15288. Refs #16052. Refs #15983. No duplicate open PR or issue was found by title search. ## What Changed - Add an index grouped by feature area. It lists every recipe, feature ID, and full capability ID. - Explain how IDs are formed and used in issues, tests, Storybook, and evidence. - Add feature IDs to all product recipes and agent access companions. - Show full capability IDs beside recipe keys and below access and Storybook guidance headings. - Preserve existing keys, heading anchors, and generated ID values. Keep the latest upstream company capability in the index. ## Verification - `node scripts/check-maps.mjs` passes for 34 feature families and 175 capability IDs. - `node --test scripts/check-maps.test.mjs scripts/storybook-feature-index.test.mjs` passes all 17 tests. - `node scripts/storybook-feature-index.mjs` passes on this checkout and generates the feature indexes and overview inputs. - `git diff --check` passes. - A source comparison confirms that the README matches the recipe index. After removal of the added ID labels, all 68 child pages match the upstream prose and headings. - Full workspace checks were attempted: `pnpm -r typecheck`, `pnpm test:run`, and `pnpm build`. They could not start because the local pnpm wrapper could not fetch and verify the pinned pnpm 9.15.4 release. This checkout also has no workspace dependencies installed. - `node scripts/storybook-catalog.mjs` could not run because `storybook/internal/csf-tools` is not installed. The direct map and index checks above pass without that dependency. - Remote typecheck, release-registry, and full build checks passed. The first attempts of [server shard 3/12](https://github.com/paperclipai/paperclip/actions/runs/39460473910/job/118758430448) and [server shard 12/12](https://github.com/paperclipai/paperclip/actions/runs/39460473910/job/118758429932) stopped after their runners received a shutdown signal. The test steps were canceled. GitHub rejects the rerun request with HTTP 403: "The workflow run containing this job is already running". Five other CI jobs remain active. The next action is to rerun the two interrupted shards after workflow 39460473910 ends. No application changes were made to address these runner interruptions. - To inspect the result, open the feature-map README, follow a recipe link, and compare its full capability IDs with its access companion. ## Risks - Low risk. The change updates map documentation only. It changes no application code or ID schema. - The readable README index and child labels repeat source IDs. Keep them aligned when a capability changes. - Generated capability descriptions now include the visible ID prefix. Generated IDs, labels, navigation order, and verification fields remain the same. - Full local workspace checks and catalog generation remain unverified for the environment reasons above. > For core feature work, check [`ROADMAP.md`](ROADMAP.md) first and discuss it in `#dev` before opening the PR. Feature PRs that overlap with planned core work may need to be redirected — check the roadmap first. See `CONTRIBUTING.md`. ## Model Used OpenAI Codex, model `gpt-6.1-sol`, with a 475,000-token context window and `xhigh` reasoning effort. The model used local file tools, shell commands, and GitHub CLI access. ## Checklist - [x] I have included a thinking path that traces from project context to this change - [x] I have specified the model used (with version and capability details) - [x] I have checked ROADMAP.md and confirmed this PR does not duplicate planned core work - [x] I have searched GitHub for duplicate or related PRs and linked them above - [x] I have either (a) linked existing issues with `Fixes: #` / `Closes #` / `Refs #` OR (b) described the issue in-PR following the relevant issue template - [x] I have not referenced internal/instance-local Paperclip issues or links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip` URLs) - [x] My branch name describes the change (e.g. `docs/...`, `fix/...`) and contains no internal Paperclip ticket id or instance-derived details - [x] I have run tests locally and they pass - [x] I have added or updated tests where applicable - [x] I have updated relevant documentation to reflect my changes - [x] I have considered and documented any risks above - [ ] All Paperclip CI gates are green - [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups - [x] I will address all Greptile and reviewer comments before requesting merge Co-authored-by: Paperclip <noreply@paperclip.ing> |
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7b9334cd10 |
Draft: Build agent-ready design proposal system (#16875)
## Thinking Path > - Paperclip helps people manage AI agents and their work. > - People need consistent UI patterns to review and control that work. > - The current board uses related layouts and controls with different spacing, type, and behavior. > - That drift makes it hard for a designer or an agent to build a new page from a reliable reference. > - Storybook can show the shared patterns and the states they need to support. > - This pull request adds design proposals, a local sandbox, and reusable UI controls so people can compare the patterns in context. > - The benefit is a clearer design system that agents can use to build consistent UI. ## Linked Issues or Issue Description **Subsystem affected** `ui/` — React board UI and Storybook. **Problem or motivation** Board pages repeat visual and interaction decisions. Storybook did not provide a complete reference for task views, conversation states, typography, toolbars, tabs, and light/dark colors. People could not compare a proposed pattern with the running board in one place. **Proposed solution** Add a staged Design Proposals catalog with foundations, components, layouts, and page specimens. Add an opt-in sandbox. Reuse production components where possible. Include synthetic conversation states and shared controls so reviewers can compare and refine them. **Alternatives considered** Separate static mockups would not show keyboard behavior, responsive layout, or real component states. Rebuilding each page only in Storybook would allow the reference to drift from the board. **Roadmap alignment** This improves existing board UI and Skills Manager surfaces. It does not add a new control-plane capability. ## What Changed - Added dark and light color references, typography and conversation specimens, and component stories for buttons, tabs, toolbars, sidebar, popovers, activity, and task lists. - Added a local design sandbox with synthetic task conversation playback and representative states. - Shared collection toolbars and navigation patterns across task, agent, project, routine, skill, connector, and artifact pages. - Added the streamlined Skills tabs and a My Skills collection that uses the shared skill cards. - Restored saved-thread access during synthetic playback, kept connector searchbox semantics, and updated reproduction checks after moving trial stories. - Documented the proposed patterns and added focused UI, catalog, and browser checks. ## Verification - `pnpm check:token-gates`, `node scripts/check-maps.mjs`, and `node scripts/storybook-catalog.mjs --check` passed. - Full workspace `pnpm -r typecheck` and `pnpm build` passed after merging master. After the review fixes, focused UI typecheck, `pnpm build-storybook`, 23 Skills Sources tests, and all 15 Storybook typography browser tests passed. - Focused task-thread and system-notice suites passed: 251 tests. Connector Browse passed 84 tests; the connector, attachment, recovery, and Storybook flyout browser journeys passed locally. - A local full Vitest run hit one intermittent chat-channels integration failure; that test passed in isolation. GitHub CI [39347996059](https://github.com/paperclipai/paperclip/actions/runs/39347996059) passed on the exact latest commit: 55 successful checks and two skipped draft-only Storybook jobs. - Greptile reviewed the exact latest commit at 5/5 with no new comments or open review threads. GitHub reports the branch as cleanly mergeable. ## Risks - This PR changes 206 files and exceeds the repository's 100-file review target. Review by commit and consider a scoped split before merge. - Design Proposals are staged references. Fixture interactions do not prove API behavior, permissions, or provider execution. - UI changes to shared controls may affect pages outside the proposal sandbox. Focused browser checks and the full CI matrix passed. ## Model Used - OpenAI Codex, GPT-6 family. The exact runtime model ID and context window are not exposed in this session. The model used reasoning, code execution, browser inspection, and local tests. Earlier branch commits were also AI-assisted in this Codex conversation. ## Checklist - [x] I have included a thinking path that traces from project context to this change - [x] I have specified the model used (with version and capability details available in this session) - [x] I have checked ROADMAP.md and confirmed this PR does not duplicate planned core work - [x] I have searched GitHub for duplicate or related PRs and linked them above where applicable - [x] I have either linked existing issues or described the issue in-PR following the relevant issue template - [x] I have not referenced internal or instance-local Paperclip issues or links - [x] My branch name describes the change and contains no internal ticket id - [x] I have run focused tests locally and they pass - [x] I have added or updated tests where applicable - [x] I have updated relevant documentation to reflect my changes - [x] I have considered and documented risks above - [x] All Paperclip CI gates are green - [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups - [x] I will address all Greptile and reviewer comments before requesting merge --------- Co-authored-by: Scott Tong <scott@scotts-mbp-m5-max.local> Co-authored-by: Paperclip <noreply@paperclip.ing> |
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4970d5ed3d |
fix(skills): unblock agent attachment and preserve Latest selections (#16899)
## Thinking Path > - Paperclip is the open source app people use to manage AI agents for work. > - Operators attach company skills to agents from the skill library. > - Attachment first reads the agent's skill snapshot to preserve other assignments. > - That read materialized and validated repository files for the entire library, even in read-only mode. > - The response also treated resolved runtime versions as stored pins. Saving could then fail with beta pins disabled. > - This pull request makes version-cache inspection lightweight and returns the stored assignment choices. > - The benefit is a responsive attachment flow that preserves Latest and explicit pins. ## Linked Issues or Issue Description **What happened?** Adding a repository skill to an agent could stall before the save request. The prerequisite snapshot read projected or checked every file in every installed repository skill. Once it returned, an existing Latest assignment could become a version pin in the save payload. The server then rejected that save when beta skill pins were disabled. **Expected behavior** Reading assignments must not prepare all repository snapshots for execution. Adding a skill must preserve the other assignments and their Latest or pinned choices. **Steps to reproduce** 1. Install repository-backed skills with stored immutable versions and cold disk caches. 2. Assign one repository skill to a Claude agent with Latest selected. Leave beta skill pins disabled. 3. Open another skill, select Add to agent, choose the same agent, and save. 4. Observe the expensive prerequisite read and the beta-pin rejection after that read completes. **Paperclip version or commit** Reproduced from master at `ac9459bae3329395f10bc81c638a374eef152baa`. **Deployment mode** Observed in hosted staging. Reproduced with a disposable local instance, embedded PostgreSQL, and the Claude local adapter on macOS arm64 with Node 26.4.0. Related: https://github.com/paperclipai/paperclip/pull/9995 adds a separate read-only assignment endpoint for peer-agent access. This fix keeps the existing configuration-gated snapshot and its permissions. ## What Changed - Respect read-only listing for current and pinned version caches. Check directory and entrypoint safety without projecting repository contents, reading all support files, or updating cache access records. - Keep complete snapshot restoration and byte validation at run preparation. Missing caches are restored from stored data. Corrupted files are repaired there. - Return stored assignment version choices in both list and sync responses. Keep runtime version details in the snapshot entries. - Add database-backed regressions for cold and warm reads, pinned versions, execution repair, and unsafe entrypoints. Add HTTP regressions for save round trips and explicit pins. - Update developer documentation and verification recipes. ## Verification - Red: both latest and pinned read-only cache regressions failed on the original code. The original code created caches during listing. - Red: the HTTP save-roundtrip regression returned 400 with the beta-pin error. The explicit-pin regression also failed. - Green: the updated API and cache suites passed all 145 tests. The three related company-skill service suites also passed. - Real browser: attached a repository skill to a paused test agent with another repository skill already set to Latest and beta pins disabled. The success toast appeared. The skill's Agents tab retained the assignment after reload. API reads confirmed both assignments remained unpinned and no repository version caches were created. - Local synthetic fixture: six skills share a 606-file repository snapshot. A cold HTTP skill-list request completed in 241 ms. This is local evidence, not a staging latency measurement. - Real service comparison on that fixture: the baseline cold list wrote 3,648 version/cache files. A warm baseline list read 3,642 version files and wrote six access records (457 ms). The fixed warm list read and wrote zero version/cache files (61 ms). Both services returned the same 16 library entries. - `pnpm -r typecheck` passed. The final API edit also passed the server typecheck. - `pnpm build` passed. - `node scripts/check-maps.mjs` and `git diff --check` passed. - The broad `pnpm test:run` invocation reported six failures in the untouched `tool-gateway-service.test.ts` suite. An isolated rerun passed all 59 tests. The broad run was stopped after recording those failures, so it is not a green full-local result. The PR CI matrix separately passed those suites. Greptile completed on the current commit with 5/5, zero comments, and no open threads. - One CI shard was interrupted by runner shutdown, with no failed assertion in its log. A single failed-job retry passed on the same commit. The aggregate CI gate passed. All current-head PR checks are complete with no failing or pending checks. - This PR does not claim that the fix has been deployed to staging. ## Risks - Settings reads check cache locations and entrypoints. They defer full support-file validation to execution. Regression tests verify that execution still repairs corrupt bytes and restores missing versions. - The response now distinguishes stored pins from resolved runtime versions. Explicit historical pins remain intact. Company, configuration, connector, and beta-pin authorization gates keep their existing behavior. - No schema migration or dependency change. ## Model Used - OpenAI GPT-6 through Codex, with reasoning, code execution, and browser tools. The exact runtime build ID and context-window size are not exposed in this session. ## Checklist - [x] I have included a thinking path that traces from project context to this change - [x] I have specified the model used (with version and capability details) - [x] I have checked ROADMAP.md and confirmed this PR does not duplicate planned core work - [x] I have searched GitHub for duplicate or related PRs and linked them above - [x] I have either (a) linked existing issues with `Fixes: #` / `Closes #` / `Refs #` OR (b) described the issue in-PR following the relevant issue template - [x] I have not referenced internal/instance-local Paperclip issues or links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip` URLs) - [x] My branch name describes the change (e.g. `docs/...`, `fix/...`) and contains no internal Paperclip ticket id or instance-derived details - [x] I have run tests locally and they pass - [x] I have added or updated tests where applicable - [x] I have updated relevant documentation to reflect my changes - [x] I have considered and documented any risks above - [x] All Paperclip CI gates are green - [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups - [x] I will address all Greptile and reviewer comments before requesting merge Co-authored-by: Paperclip <noreply@paperclip.ing> |
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06689c1b34 |
perf(skills): coalesce inventory before run cache locking (#16576)
Share each active company skill-inventory refresh before taking the version-cache lock. Read actor visibility under the lock and keep snapshot publication protected through durable run pinning. Preserve empty-selection behavior and the list API. Validation: 176 affected cases, full repository typecheck/build, fresh full CI/E2E, security and exact-head Apex 5/5 pass. The local six-reader latency experiment improves from 50.4s to 18.3s; live response latency is a separate acceptance check. Co-Authored-By: Paperclip <noreply@paperclip.ing> |
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5fbece9dcc |
Synchronize assigned skills through agent runtime hooks (#16501)
## Thinking Path > - Paperclip manages shared skills and agent assignments. > - Runtime plugins need installed skills before a task starts. > - Skill content can change without changing the agent row. > - Source access and version pins also affect delivered files. > - This pull request feeds those changes into the durable runtime stream. > - The runtime reader resolves the same immutable skill sources used for execution. ## Linked Issues or Issue Description Builds on merged PR #16499. This pull request now targets `master` and contains only the five skill synchronization commits. **Problem** Plugins receive no durable notification when an assigned skill changes. A saved assignment can also become inaccessible after private-source access changes. **Proposed solution** Invalidate referencing agents at installed skill mutations. Invalidate inherited access when source bindings, project privacy, or policy change. Return authorized skill sources and version IDs through the owning runtime reader. **Alternatives considered** Activity-only subscriptions miss service writers. Per-task synchronization adds preparation work. Copying current files would ignore version pins. **Roadmap alignment** This extends existing skills, source synchronization, and plugin runtime support. ## What Changed - Defer multi-skill source runtime hooks until commit, after publication holds all skill rows. Keep file-save journaling immediate to preserve filesystem rollback. - Add transactional invalidations for skill content, companion files, versions, rename, deletion, policy, source access, and pin-setting changes. - Recognize canonical keys and supported legacy aliases. - Reuse the execution skill resolver, current agent access, and instance version-pin rules. - Resolve and materialize sources outside the agent row lock. Recheck ownership and runtime revision afterward. - Keep task-only mentions and running-task snapshots in the execution path. - Document conservative invalidations for pinned assignments and inherited access. ## Verification - Rebased onto origin/master `9f4a956b90`, which contains merged PR #16499. All five commits are unchanged according to `git range-diff`; no conflict resolutions or source changes were needed. - On rebased head `58b065941`, all 237 focused tests passed: runtime skill hooks/source publication (41), plus content service, assignment routes, policy routes, and project source access (196). - Server typecheck passed after rebuilding Runner with the installed Rust toolchain. Migration numbering/safety and map checks passed; snapshot pruning made no changes. Migration CLI checks required local IPC permission. - Real PostgreSQL coverage includes concurrent source publication/version saves, policy-only tightening/restoration, referencing-agent fanout, company isolation, no-op counters, supporting files, rename/deletion, rollback, private-source access, pinned/latest bytes, and unassignment. - Earlier stack validation passed workspace typecheck/build. Fresh hosted CI and review must verify the rebased head before handoff. - The broad local suite was previously limited by an unchanged diagnostic test that rejects "private" in an error stack under this /private/tmp worktree; that unchanged suite passed all 108 tests in the original checkout. Hosted full-suite checks provide exact-head verification. - Diff whitespace and full PR secret/PII scan passed. - All hosted CI/security checks are green on `58b065941`; fresh standard Greptile and Apex both returned 5/5 with no findings or unresolved threads. The PR targets master and is mergeable without conflicts. ## Risks - Apply migration 0348 after the runtime-stream migration in #16499. - Content invalidations include pinned assignments. The resolved version stays pinned; consumers can avoid writes when its version/hash is unchanged. - Project access and source changes invalidate only agents assigned skills from the affected sources. Company policy still invalidates the company. Source polling bookkeeping and popularity counters do not create work. - The reader rebuilds installed caches without upstream requests. Concurrent changes cause a bounded retry and then a conflict. - Private transport integration and live remote computer qualification remain separate. ## Model Used OpenAI Codex, GPT-6, with reasoning, repository inspection, code execution, and testing. The exact deployment model ID and context window are not exposed in this session. ## Checklist - [x] I have included a thinking path that traces from project context to this change - [x] I have specified the model used (with version and capability details) - [x] I have checked ROADMAP.md and confirmed this PR does not duplicate planned core work - [x] I have searched GitHub for duplicate or related PRs and linked them above - [x] I have either (a) linked existing issues with `Fixes: #` / `Closes: #` / `Refs: #` OR (b) described the issue in-PR following the relevant issue template - [x] I have not referenced internal/instance-local Paperclip issues or links (only public GitHub references) - [x] My branch name describes the change and contains no internal Paperclip ticket id - [x] I have run tests locally and they pass (focused suites; broad local limitation documented above) - [x] I have added or updated tests where applicable - [x] I have updated relevant documentation to reflect my changes - [x] I have considered and documented any risks above - [x] All Paperclip CI gates are green - [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups - [x] I will address all Greptile and reviewer comments before requesting merge --------- Co-authored-by: Paperclip <noreply@paperclip.ing> |
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67a9d5cc37 |
perf(runner): bypass skill cache waits for empty selections (#16498)
Native runs with no skill files no longer queue behind company skill-cache work. Preserve saved empty selections and the existing exclusion for selected and legacy operational skills. Verified with real PostgreSQL held-lock regressions, 20 distinct affected cases, full repository typecheck/build, fresh full CI/E2E/security and exact-head Apex 5/5. Hosted latency remains to be verified. Co-Authored-By: Paperclip <noreply@paperclip.ing> |
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86c965ce7a |
fix(skills): expire unused version caches and restore saved contents (#16433)
Expire idle skill-version caches with durable runtime pins, bounded discovery, conservative retention, and database-backed restoration. Co-Authored-By: Dotta <cryppadotta@users.noreply.github.com> Co-Authored-By: Paperclip <noreply@paperclip.ing> |
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4460785534 |
fix(skills): preserve referenced files in large repository imports (#16308)
## Thinking Path
> - Paperclip is the open source app people use to manage AI agents for
work.
> - Agents use skills imported from project repositories.
> - Large repositories fall back to isolated skill folders.
> - That fallback drops shared files and turns advisory links into
import failures.
> - This pull request retains bounded referenced files and keeps missing
references advisory.
> - Users can import valid skills such as test-audit without editing the
source repository.
## Linked Issues or Issue Description
Refs #16066. Refs #16256. Refs #16288. Related draft #15730 adds
optional reference selection to individual skill packages. This fix
applies automatic repository fallback and does not add that selection
UI.
**What happened?**
A project source showed 86 warnings. It rejected 23 skills solely
because references were absent from the isolated package. It also
treated web routes and inline Markdown examples as files. For
test-audit, repository scripts were resolved inside the skill folder.
**Expected behavior**
Retain referenced files that fit the package limits. Missing references
must not block an otherwise valid selected skill. Preserve content
validation and installed shared files.
**Steps to reproduce**
Import paperclipai/paperclip at commit
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33d24e48ad |
fix(skills): simplify source rows, errors, and actions (#16310)
## Thinking Path > - Paperclip manages agent skills from GitHub repositories. > - Skills → Sources shows saved repositories and their sync status. > - A saved source gained a second repository row when other projects used the same repository and branch. > - That row repeated the GitHub icon and branch, and it exposed project names that did not help with source management. > - The page also repeated the Installed navigation link and showed refresh errors as separate lines of text. > - Connection management also appeared under each source, where it competed with source-specific actions. > - This pull request shows each saved source once, groups error details, and moves connection management into the menu beside Import from GitHub. > - The result is a clearer source list that keeps import and recovery actions available. ## Linked Issues or Issue Description **What happened?** When a saved source shared its repository and branch with other projects, Skills → Sources displayed a second GitHub header and the names of those projects. The page also displayed an extra Installed skills link and repeated Manage GitHub connection under source rows. A failed refresh placed its timestamp and error on separate lines. **Expected behavior** Show one row for each saved source. Keep project names out of that row. Keep the additional import action available in More. Put connection management in the page actions menu beside Import from GitHub. Present refresh errors as one readable notice with the time and review action. **Steps to reproduce** 1. Open Skills → Sources in a company with one saved GitHub source and another project that uses the same repository and branch. 2. Observe the repeated repository row and project names. 3. Open the Storybook journey `Existing source, more projects` to inspect the same state. Open `Retained skills and retry` to inspect a failed refresh. **Paperclip version or commit** The issue is present on base commit `739f9e40a4`. **Deployment mode** Built from source. The issue was also observed in a staging workspace. ## What Changed - Remove project names, the duplicate repository row, and the redundant Installed skills link from saved source rows. - Put imports for additional projects in the source More menu. Show brief import progress in the source metadata. - Group source errors, attempt time, and the review link in a compact notice. Add a Storybook journey and browser coverage for the shared-repository state. - Add a page actions menu beside Import from GitHub. Put Manage GitHub connection there and remove the repeated inline links. Cover the menu and keyboard focus in the Storybook browser suite. ## Verification - `pnpm -r typecheck`, `pnpm build`, `pnpm check:token-gates`, `node scripts/check-maps.mjs`, and `node scripts/storybook-catalog.mjs --check` passed locally. The Skills sources unit suite passed 22 tests. - All 18 repository-skills Storybook browser tests passed, including the shared-source import, connection menu, mobile, and failed-refresh journeys. - A local full `pnpm test:run` was stopped after a server runner-API test timed out. An isolated diagnostic identified macOS embedded PostgreSQL shared-memory exhaustion. The PR passed all 55 CI checks, including server test shards and end-to-end tests. - Open the Storybook journeys `Existing source, more projects`, `Automatically imported skills`, and `Retained skills and retry` to inspect the compact source row, page actions menu, and grouped error notice. ## Risks Low risk. The visible import action for projects that share a saved source moves to More. Connection management moves to a page menu and opens the Apps catalog. People must open those menus to find the actions. The import API and access checks do not change. > I checked `ROADMAP.md`. This source-list correction does not duplicate planned core work. ## Model Used OpenAI Codex, GPT-6 family. The task runtime did not expose an exact serving model ID or context-window size. The model used tool calls, code edits, and browser verification. ## Checklist - [x] I have included a thinking path that traces from project context to this change - [x] I have specified the model used (with version and capability details) - [x] I have checked ROADMAP.md and confirmed this PR does not duplicate planned core work - [x] I have searched GitHub for duplicate or related PRs and linked them above - [x] I have either (a) linked existing issues with `Fixes: #` / `Closes #` / `Refs #` OR (b) described the issue in-PR following the relevant issue template - [x] I have not referenced internal/instance-local Paperclip issues or links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip` URLs) - [x] My branch name describes the change (e.g. `docs/...`, `fix/...`) and contains no internal Paperclip ticket id or instance-derived details - [x] I have run tests locally and they pass - [x] I have added or updated tests where applicable - [x] I have updated relevant documentation to reflect my changes - [x] I have considered and documented any risks above - [x] All Paperclip CI gates are green - [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups - [x] I will address all Greptile and reviewer comments before requesting merge --------- Co-authored-by: Paperclip <noreply@paperclip.ing> |
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df4ee06e2f |
feat(skills): select and validate tracked GitHub branches (#16288)
## Thinking Path > - Paperclip is the open source app people use to manage AI agents for work. > - Skills can track a branch in an authorized GitHub repository. > - Sources previously offered only a default-branch repair action. > - People need to select a listed branch or enter a branch that GitHub has not listed. > - The server must validate the selected ref with the caller's authorized connection. > - This pull request connects the approved branch picker to production APIs. > - Installed skills remain usable while the source changes its tracked ref. ## Linked Issues or Issue Description **Subsystem affected** Skills UI, shared API contracts, GitHub source services, and agent API discovery. **Problem or motivation** The default-branch repair action does not let people choose another branch. The settings service also validates the old ref when a caller supplies a new ref other than HEAD. A missing tracked branch can prevent connection repair even when the selected account has repository access. **Proposed solution** Load a bounded branch list with the authorized connection. Mark the default branch. Search listed branches or accept a typed ref. Validate the selected ref before saving. Keep the chosen value after a load error, invalid ref, or concurrent update. Save the selected connection and branch together during connection repair. **Alternatives considered** A default-branch button does not support a named branch. A text field alone does not help people find the repository default or available branches. **Roadmap alignment** This improves the existing Skills source manager. It does not add a new skill import system. **Additional context** Refs #16066 and #16256. This is the production implementation of the approved branch-selection Storybook journeys. ## What Changed - Add an authorized branch-list endpoint and shared response/query types. Register it in agent API discovery. - Validate the requested ref, including the returned commit SHA. Preserve source leases, revision checks, project ownership, skill identities, selections, and installed versions. - Add the searchable branch picker to Sources and connection repair. Allow typed refs during branch discovery and after discovery fails. - Keep save errors in the dialog. Retain the selected branch through a concurrent source update. - Use the production components and API client in Storybook. Add keyboard, touch, loading, retry, invalid-ref, connection-repair, and concurrent-update browser journeys. - Update product documentation and the feature/access maps. ## Verification - Red/green: two new database regressions fail against the previous service and pass against the implementation. - Linux database/service suite: 85 tests passed. This includes source visibility, human/agent authorization, selected connections, immutable versions, and invalid refs. - Rebased branch and review fixes: 94 focused UI, route, branch-validation, and fixture tests passed. Two conflict-message regressions and the stale-retry fixture regression fail before the fix and pass after it. - Storybook build passed. All 26 focused browser journeys passed. - Repository typecheck and build passed. Final UI typecheck passed after the review fixes. - The full local Vitest run was interrupted when the checkout and its dependencies disappeared. It reported missing working-directory/Postgres files and worker startup errors. Its two timed-out tests pass after the checkout was restored. The complete CI suite passed on the final head, `cf5d4c8f0a`: [CI run](https://github.com/paperclipai/paperclip/actions/runs/38571068332). One unchanged workspace timestamp test required a single rerun. Its release-minus-one-millisecond value can equal the original confirmation time. The rerun passed. - Live acceptance passed on implementation head `5dd935bf14` in an isolated macOS arm64 instance with Node 24.21.0 and an authorized private GitHub repository. The UI loaded the actual default branch, saved branch and selected connection together, and preserved the installed skill/version IDs after reload. An invalid typed ref retained the draft and showed the provider error. A valid typed HEAD ref then saved successfully. The owned runtime and database were stopped after the test. Focused unit, Linux database, and browser suites passed again after the error-handling review fixes. - Greptile reviewed final head `cf5d4c8f0a` at 5/5. Both review threads are resolved; the fresh review has no remaining findings. - Token gates and map/catalog checks passed. - Review entry points: `Skills / Project repository skills / 03 Branch selection components` and `04 Branch selection journeys`. Run `pnpm storybook` to inspect them. - Browser command: `pnpm exec playwright test --config tests/storybook-visual/playwright.config.ts tests/storybook-visual/skill-source-branch-selection.spec.ts tests/storybook-visual/project-repository-skills.spec.ts`. - Manual check: open an independent GitHub source, choose a new branch, select the default or type a ref, save, and reload. Try an invalid ref and confirm the selection remains in the dialog. For a project-bound source, change its ref in project settings. ## Risks - GitHub discovery is bounded to 100 listed branches. The default branch is always included. Typed refs remain available. - A source can change while the dialog is open. The API rejects a stale revision and the UI keeps the draft for retry. - A ref change schedules the existing refresh pipeline. Installed versions remain available until a successful refresh imports new content. - No database migration or credential storage change is required. Existing HEAD requests remain supported. ## Model Used OpenAI Codex, GPT-6 family. The serving model's exact identifier and context-window size are not exposed in this session. Used reasoning, repository tools, code execution, and browser tools. ## Checklist - [x] I have included a thinking path that traces from project context to this change - [x] I have specified the model used (with version and capability details) - [x] I have checked ROADMAP.md and confirmed this PR does not duplicate planned core work - [x] I have searched GitHub for duplicate or related PRs and linked them above - [x] I have either (a) linked existing issues with `Fixes: #` / `Closes #` / `Refs #` OR (b) described the issue in-PR following the relevant issue template - [x] I have not referenced internal/instance-local Paperclip issues or links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip` URLs) - [x] My branch name describes the change (e.g. `docs/...`, `fix/...`) and contains no internal Paperclip ticket id or instance-derived details - [x] I have run tests locally and they pass - [x] I have added or updated tests where applicable - [x] I have updated relevant documentation to reflect my changes - [x] I have considered and documented any risks above - [x] All Paperclip CI gates are green - [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups - [x] I will address all Greptile and reviewer comments before requesting merge --------- Co-authored-by: Paperclip <noreply@paperclip.ing> |
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c36281d639 |
fix(skills): repair missing branches and show grouped import progress (#16256)
## Thinking Path > - Paperclip lets people manage AI agents and their reusable skills. > - GitHub skill sources must keep their installed content usable during updates. > - A source can track a branch that no longer exists. > - The UI treats that GitHub error as a connection problem, so saving a valid account does not resolve it. > - Project workspaces also show the same repository several times, and long imports give little feedback. > - This pull request adds explicit branch repair, groups repository imports, and shows import progress. > - People can repair the actual problem and see when their import is working. ## Linked Issues or Issue Description Refs #16066 and #14713. This fixes the Sources experience introduced by those changes. Related adapter-source PRs #14340 and #14341 cover runtime mounting, not this source-management flow. No overlapping source-management fix was found. **What happened?** An installed source tracked `main` while its GitHub repository used `master`. GitHub returned HTTP 422. The UI showed a general read error and asked for a new connection after a valid account was saved. The project repository list repeated the same repository/ref for each project. Import had no spinner or explanation of queued work. **Expected behavior** Identify an unavailable branch and offer an explicit repair. Retain the selected connection and installed versions. Show one repository/ref row with its projects. Give immediate feedback and show the queued and active import states. **Steps to reproduce** 1. Install a source with an immutable commit and a saved tracked branch that does not exist. 2. Refresh it, or try to save a valid GitHub connection. 3. Add the same repository/ref to two legacy project workspaces and open Sources. 4. Import that repository and observe the row until installation completes. ## What Changed - Distinguish a missing GitHub revision from access denial and temporary read errors. - Validate both repository identity and the tracked revision when saving a connection. - Offer Use default branch on independent sources and in connection repair. Keep `HEAD` as the default-branch alias after refresh. Preserve skill IDs, versions and selections. - Keep active project refs under project configuration. Reject source-level changes that would alter their tracking. Recheck the ref under the source lock when project attachment races with branch repair. - Group matching repository/ref workspaces. Adopt eligible workspaces and skip pending workspaces. Keep remaining project links inside the existing source card. Allow remaining imports while another workspace is pending. - Show a spinner, busy state and queued/importing text. Keep the saved authorized account selected in connection repair. - Update shared contracts, feature/access maps, database notes and production-component Storybook journeys. ## Verification - Red/green: three local regressions failed on the original code: missing-ref classification, duplicate repository rows, and branch repair instead of another connection prompt. The changed UI/reader tests pass after the fixes. - Live local app with a real authorized GitHub credential: reproduced HTTP 422 for the unavailable branch; used the UI to restore default-branch tracking; confirmed the same connection, skill ID and single immutable version remained. - Live local grouped Paperclip import: one source, two project associations and 52 installed skills. Sources survived reload. No staging data was changed. - All 16 project repository Storybook browser journeys pass on the final head, including keyboard focus recovery after branch repair. These include branch repair, grouped imports, connection selection, recovery, removal and responsive layouts. - Repository typecheck, production build, Storybook build, token gates and 28 map/catalog tests passed. Final UI typecheck and build also passed after grouping remaining project links. - Linux qualification: all 94 focused source, project import, GitHub reader and UI tests pass with supported Node 24. No database tests were skipped. Both review findings failed before their fixes and pass after them. - The full local `pnpm test:run` attempt was stopped after macOS database suites exhausted the host shared-memory limit. The complete Linux CI matrix is the full-suite gate. The complete Linux CI matrix passes for head `f886e3ac073ec1c6f051fd6429496234f5143694`. - Greptile rates head `f886e3ac073ec1c6f051fd6429496234f5143694` 5/5. Both findings are fixed and all review threads are resolved. - Storybook: `skills-project-repository-skills-02-journeys--missing-branch` and `--duplicate-projects`. ## Risks - Default-branch repair changes the tracked branch only after an explicit user action. Existing execution version pins stay intact. - A selected connection now needs access to the tracked revision, not only repository metadata. - Grouping is by repository and ref. Project access and provenance remain separate and are checked by the existing services. - Legacy source errors contain safe text. The repair-action classifier maps known errors and treats other failures as retryable. No credentials or provider response bodies are returned. - No schema migration, workflow change, lockfile change or staging deployment. ## Model Used OpenAI Codex, GPT-6 family. The exact serving model identifier and context-window size are not exposed in this session. Tool-assisted implementation, code execution and browser verification. ## Checklist - [x] I have included a thinking path that traces from project context to this change - [x] I have specified the model used (with version and capability details) - [x] I have checked ROADMAP.md and confirmed this PR does not duplicate planned core work - [x] I have searched GitHub for duplicate or related PRs and linked them above - [x] I have either (a) linked existing issues with `Fixes: #` / `Closes #` / `Refs #` OR (b) described the issue in-PR following the relevant issue template - [x] I have not referenced internal/instance-local Paperclip issues or links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip` URLs) - [x] My branch name describes the change (e.g. `docs/...`, `fix/...`) and contains no internal Paperclip ticket id or instance-derived details - [x] I have run tests locally and they pass - [x] I have added or updated tests where applicable - [x] I have updated relevant documentation to reflect my changes - [x] I have considered and documented any risks above - [x] All Paperclip CI gates are green - [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups - [x] I will address all Greptile and reviewer comments before requesting merge Co-Authored-By: Paperclip <noreply@paperclip.ing> |
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473c80d13f |
Automatically import and update project repository skills (#16066)
Automatically import skills from new GitHub project repositories and update enabled sources in the background. Preserve project-derived access, saved selections, immutable execution versions and explicit pins; add legacy adoption, refresh and connection repair in Sources. Include durable scheduling and bounded work credits, production Storybook journeys, real GitHub-to-routine acceptance receipts and final-head CI/security/Greptile qualification. Co-Authored-By: Paperclip <noreply@paperclip.ing> |
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433d94ee0b |
refactor(maps): generate indexes from local story and feature metadata (#16214)
## Thinking Path > - Paperclip is the open source app people use to manage AI agents for work. > - Feature recipes and Storybook help contributors find behavior, examples, and verification steps. > - Independent feature changes currently update shared catalogs, indexes, and review hashes. > - Those shared files cause merge conflicts and repeated bookkeeping during parallel work. > - This pull request stores metadata in each feature recipe and story, then generates the combined views. > - Contributors can merge independent work without editing a common index. Git and PR evidence retain change and review history. ## Linked Issues or Issue Description **What existing behavior does this improve?** Maintaining the product, agent-access, and Storybook maps while multiple agents change different features. **Current behavior** A story or recipe change can update `catalog.json`, `INDEX.md`, review hashes, verification tables, and tracked generated navigation. Two unrelated changes then conflict in the same files. **Proposed behavior** Each story declares capability links and classification in `parameters.paperclip`. Each feature recipe declares its navigation and optional verification guidance. Startup, build, and UI typechecking discover these sources and generate ignored indexes and Storybook pages. **Reason and benefit** A routine change edits its own source files. Aggregate metadata is rebuilt from the merged checkout. There is no sidecar registry, shared review journal, or hash acknowledgment to maintain. **Breaking changes** The tracked Storybook catalog and index paths are retired. Consumers use `ui/storybook/generated/` or `maps/generated/` after generation. Contributor instructions and the existing feature-gap browser suite use the new paths. Story and overview IDs remain stable. ## What Changed - Move the existing annotations into 262 story files. Preserve classifications, capability associations, exports, and explicit IDs. - Discover all 35 feature recipes. Store section/order beside each recipe and move durable verification routes out of the shared table. - Remove tracked catalogs, inventories, overview pages, and inline preview ordering. Keep authored preview behavior in `preview-base.tsx`. - Generate the Storybook guide, feature/access Markdown indexes, gap report, page-reference inventory, and preview wrapper automatically. - Update the map contracts and maintenance skills to use Git history and revision-specific PR/CI evidence. - Add schema, identity, regeneration, and actual Git merge tests. Run these through the existing UI Vitest suite. Add focused browser navigation checks. This is one coordinated migration. Most of the 367 changed files contain only moved metadata or deleted generated content. Review the generator scripts, map contracts, Storybook configuration, and tests first. No product API or authorization behavior changes. ## Verification Passed: - `node scripts/check-maps.mjs`: 35 paired areas and 175 capabilities. - `node scripts/storybook-catalog.mjs --check`: 262 suites and 2,485 authored stories after incorporating current master. - `node --test scripts/check-maps.test.mjs scripts/storybook-catalog.test.mjs scripts/storybook-feature-index.test.mjs`: 28 tests, including independent branches merged in both orders with identical generated output and no tracked changes. - `pnpm --filter @paperclipai/ui exec vitest run storybook/map-tooling.test.ts`: the CI entrypoint runs those map tests. - `pnpm check:token-gates`. - `pnpm -r typecheck` and `pnpm build` before the final master rebase. - `pnpm build-storybook`: all 2,517 original story/docs URLs retained. Current master contributes exactly four additional recovery stories. - Focused Playwright navigation checks: search and open a feature without examples; expand verification guidance and check source links; retain capability order and follow a related Foundations suite. The final clean Storybook build passed after deleting every ignored map output. Post-rebase UI typechecking and both browser tests passed. The working tree stays clean after generation. The concurrent-cleanup regression fails with `ENOENT` without the fix and passes with it. All GitHub CI gates passed on `00fc7ec18e`, which also received Greptile 5/5 with no unresolved findings. The final merge commit `1c3c5143a6` incorporates master and resolves only the two modify/delete conflicts by retaining removal of the aggregate index and catalog. Master’s new workspace feature and access guidance is preserved. Map validation, catalog generation, overview generation, all 28 map tests, and diff checks pass after conflict resolution. The maintainer explicitly requested merging without another Greptile review. CI has not been rerun to completion on this merge commit. The local repository-wide `pnpm test:run` was stopped before completion after the earlier CI matrix passed; it is not reported as a local pass. No screenshot baselines or production acceptance are claimed. To repeat the browser check against an owned Storybook server: ```sh PAPERCLIP_GAP_STORYBOOK_URL=http://127.0.0.1:6136 pnpm exec playwright test --config tests/storybook-visual/feature-gap-stories.config.ts map-navigation.spec.ts ``` ## Risks - Existing branches need a one-time rebase to move their catalog changes into local annotations. The PR incorporates the recovery changes from current master. - Changing the same story or capability can still produce a meaningful conflict. This removes the shared aggregate bottleneck. - The generator uses Storybook's existing CSF parser. Literal-only annotations and parser regression tests protect the current contract. - Generated Markdown is available after running the generator; the published Storybook provides a browsable guide. - Shared source changes still require review. Removing hashes removes mechanical acknowledgments; it does not establish runtime parity. ## Model Used OpenAI Codex, based on GPT-6, with repository inspection, code execution, and browser-test tools. The exact deployment model ID and context window were not exposed in this session. ## Checklist - [x] I have included a thinking path that traces from project context to this change - [x] I have specified the model used (with version and capability details) - [x] I have checked ROADMAP.md and confirmed this PR does not duplicate planned core work - [x] I have searched GitHub for duplicate or related PRs and linked them above - [x] I have either (a) linked existing issues with `Fixes: #` / `Closes #` / `Refs #` OR (b) described the issue in-PR following the relevant issue template - [x] I have not referenced internal/instance-local Paperclip issues or links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip` URLs) - [x] My branch name describes the change (e.g. `docs/...`, `fix/...`) and contains no internal Paperclip ticket id or instance-derived details - [x] I have run tests locally and they pass - [x] I have added or updated tests where applicable - [x] I have updated relevant documentation to reflect my changes - [x] I have considered and documented any risks above - [x] All Paperclip CI gates are green on the previously reviewed head `00fc7ec18e`; final conflict-resolution checks are documented above - [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups on `00fc7ec18e`; another review was waived by the maintainer - [x] I will address all Greptile and reviewer comments before requesting merge --------- Co-authored-by: Paperclip <noreply@paperclip.ing> |
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7d9b93aee2 |
docs: establish paired feature and agent access maps (#16025)
## Thinking Path > - Paperclip is the open source app people use to manage AI agents for work. > - Contributors use the feature map to understand and verify product capabilities. > - Agents need APIs and usable entry points within their permission boundaries. > - Product recipes and agent access need separate records with shared capability IDs. > - This pull request establishes that contract and gives maintenance ownership of both maps. > - The benefit is repeatable access review without changing product behavior or permissions. ## Linked Issues or Issue Description Refs: #15983, which added the portable verification skills and updated the feature map. This is its contract-only follow-up. Related: #15288 added the original feature map. **Issue type** Missing documentation and maintenance contract. **Where is the issue?** The product map, its missing agent access companions, and the verification skills. **What's wrong?** There is no shared convention for API presence, agent entry points, permission boundaries, access gaps, or evidence. An API declaration does not prove that a permitted native or remote agent can use it. **Suggested fix** Keep the product and agent access maps as siblings under `maps/`. Reuse capability IDs. Record representative source inventory separately from operation review and live proof. Keep both maps aligned through the maintenance skill. ## What Changed - Move the existing product map to `maps/feature-map/`. Preserve its recipes and Poteto format. Update relative links and add companion links. - Add `maps/agent-access-map/` with 35 area files and 171 matching capability IDs. Seed representative API operations, agent paths, policies and known gaps from the reviewed source inventory. Mark entries as `baseline`, `source-only`, and live verification `not-run`. - Define the shared contract in `maps/README.md`. Track API presence, agent availability, policy, evidence and review depth separately. Require operation enumeration before marking a broad capability operation-reviewed. - Extend `maintain-verification-skill` to reconcile both maps and inspect actual route policy and production tool admission. Update creation, verification, notices and contributor references to use the shared contract. - Add `scripts/check-maps.mjs` and ten regression tests. Check matching areas/IDs, indexes, references, contract fields, API method/path examples, justified exceptions and evidence-state consistency. - Keep the coverage inventory unchanged. Preserve skill invocation policies and both MIT license blocks. No product API, permission, UI, runtime helper, migration, dependency or workflow changes. ## Verification - Passed: `node scripts/check-maps.mjs` reports 35 paired areas and 171 matching capability IDs. All local map references resolve. - Passed: `node --test scripts/check-maps.test.mjs` runs ten tests. Fixtures cover missing companions, renamed/orphan/duplicate IDs, broken references, missing operation fields, empty exceptions, missing API examples, empty policy fields, and verified evidence without passed verification. - Passed: metadata validation for all three verification skills. Skill and contributor links resolve. Invocation policies and both license blocks are unchanged. - Compared relocated recipes with current master. Contents differ only in relative links and companion links. `coverage.json` is byte-for-byte unchanged. Master's updated read-only interaction test reference is retained. - Passed: `git diff --check`. The branch starts from current master and contains only this contract change. - Repository-wide typecheck, tests and build were not run locally for this documentation and Node structural-check scope. Live agent access was not exercised. Those gaps are explicit in the baseline entries; the structural check does not certify behavior. CI and automated review are pending. ## Risks - The companions are representative source baselines. They are not complete operation inventories or passed agent journeys. - The checker cannot establish actual permissions, native tool admission, operation completeness or truthful live evidence. Maintenance must inspect source and verify with the actual permitted agent context. - External links to the old product-map directory may need updates. Repository references have been updated. - Existing access gaps and board/user restrictions remain recorded. This contract does not change authority or implement missing paths. ## Model Used OpenAI GPT-6 through Codex assisted with this change. The session does not expose the exact serving model ID, configured context-window size, or reasoning setting. Capabilities used: source analysis, file edits, shell commands, and structural regression tests. ## Checklist - [x] I have included a thinking path that traces from project context to this change - [x] I have specified the model used (with version and capability details) - [x] I have checked ROADMAP.md and confirmed this PR does not duplicate planned core work - [x] I have searched GitHub for duplicate or related PRs and linked them above - [x] I have either (a) linked existing issues with `Fixes: #` / `Closes #` / `Refs #` OR (b) described the issue in-PR following the relevant issue template - [x] I have not referenced internal/instance-local Paperclip issues or links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip` URLs) - [x] My branch name describes the change (e.g. `docs/...`, `fix/...`) and contains no internal Paperclip ticket id or instance-derived details - [x] I have run tests locally and they pass - [x] I have added or updated tests where applicable - [x] I have updated relevant documentation to reflect my changes - [x] I have considered and documented any risks above - [ ] All Paperclip CI gates are green - [ ] Greptile is 5/5 with no open P2s, recommendations, or follow-ups - [x] I will address all Greptile and reviewer comments before requesting merge Co-authored-by: Paperclip <noreply@paperclip.ing> |