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5054c9ef9b |
fix(grok): stage the environment test from a host directory, and survive an absent workspace (#13416)
## Thinking Path
> - Paperclip is the open source app people use to manage AI agents for
work
> - An agent runs through an adapter. Before you use an environment, the
adapter's environment test probes it and reports structured checks
> - The grok adapter's environment test stages the managed account into
a remote environment first. It gave the runtime its resolved `cwd` as
the host workspace directory
> - For a remote target that `cwd` is a path inside the sandbox. It does
not exist on the host that runs the test
> - A new workspace ignore scan reads that host directory. The scan
failed on the missing directory, and the error escaped the environment
test
> - The user got a server error instead of a result with checks
> - This pull request stages from a host temporary directory, sends the
remote path separately, and reports a staging failure as a check
> - The benefit is that the grok environment test always answers with
checks, and a workspace directory that does not exist no longer stops a
runtime preparation
## Linked Issues or Issue Description
No existing issue. The problem, in the bug report format:
**What happened**
The grok environment test failed with `Error: Workspace ignore scan
failed: git-ignore-scan-failed`. The route returned a server error, so
the user saw no checks at all.
**Expected behavior**
The environment test always returns `{status, checks}`. Every other
problem it finds (an invalid working directory, a command it cannot
resolve, a probe that times out) becomes a check with a level. A
credential staging problem must do the same.
**Steps to reproduce**
1. Configure a grok agent with a managed AI connection.
2. Point the agent at a remote (sandbox) environment.
3. Run the environment test for that environment.
**Paperclip version or commit**
Present on master. Both halves landed on 2026-09-12: the call site in
#13247, and the scan that it trips in #13353.
## What Changed
- `packages/adapters/grok-local/src/server/test.ts` stages the managed
account through a fresh host temporary directory and passes the remote
path as `workspaceRemoteDir`. This is the split `codex-local` and
`opencode-local` already use.
- A failure while staging becomes a `grok_environment_unprepared` check
with level `error`, instead of an exception that escapes the function.
The probe does not run after it, because there is no prepared
environment to probe.
- The temporary directory is removed in the existing `finally` block.
- `packages/adapter-utils/src/sandbox-managed-runtime.ts` treats a
`workspaceLocalDir` that does not exist as "nothing to sync". A
directory that is not there has no files for ignore rules to govern,
nothing to stage, and nothing to restore.
- Tests: the grok environment test now covers the managed-connection
remote branch, which had no coverage. `sandbox-file-sync.test.ts` covers
a preparation whose workspace directory does not exist.
## Verification
```
npx vitest run packages/adapters/grok-local/src/server/test.test.ts # 9 passed
npx vitest run packages/adapter-utils/src/sandbox-file-sync.test.ts \
packages/adapter-utils/src/sandbox-managed-runtime.test.ts # 90 passed
cd packages/adapter-utils && npx tsc --noEmit # clean
cd packages/adapters/grok-local && npx tsc --noEmit # clean
```
The two new grok tests fail against the old call site: the first asserts
the runtime never receives the remote path as its host workspace
directory, and the second asserts a staging failure becomes a check
instead of an exception.
## Risks
Low risk, and limited to environment preparation.
- The adapter change only affects the managed-connection remote branch
of one adapter's environment test.
- The `adapter-utils` change makes a preparation that used to throw now
continue with no workspace sync. A real workspace is unaffected, because
the directory exists in that case and the scan runs exactly as before.
- No migration. No API change.
## Model Used
- Claude Fable 5 (`claude-fable-5`), 1M context, extended thinking, run
through Claude Code with tool use and code execution.
## Checklist
- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have searched GitHub for duplicate or related PRs and linked
them above
- [x] I have either (a) linked existing issues with `Fixes: #` / `Closes
#` / `Refs #` OR (b) described the issue in-PR following the relevant
issue template
- [x] I have not referenced internal/instance-local Paperclip issues or
links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip`
URLs)
- [x] My branch name describes the change (e.g. `docs/...`, `fix/...`)
and contains no internal Paperclip ticket id or instance-derived details
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [ ] I have updated relevant documentation to reflect my changes — no
documented behavior changes
- [x] I have considered and documented any risks above
- [ ] All Paperclip CI gates are green — pending first run
- [ ] Greptile is 5/5 with no open P2s, recommendations, or follow-ups —
pending first review
- [x] I will address all Greptile and reviewer comments before
requesting merge
|
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6809314a3f |
fix: recover sandbox workspace setup and retries (#13353)
## Thinking Path > - Paperclip manages AI agents and their tasks. > - Sandbox tasks need a workspace and a provider session before work can start. > - A selected Git subfolder is a valid workspace, but it is not a repository fetch source. > - A resumed sandbox must keep one resource identity when the provider fills in its region. > - Workspace reuse does not prove that a provider session has started. > - A recorded continuation must not leave an old failure blocking Retry for a newer attempt. > - This pull request fixes those setup and recovery boundaries while preserving ownership checks. ## Linked Issues or Issue Description **What happened?** A Daytona task failed before provider startup when its project folder was inside a parent Git repository. After the folder was repaired, Retry resumed the same sandbox and verified its workspace sentinel, but workspace preparation reported that the lease was no longer active. A later attempt could fail because the resumed workspace had no provider checkpoint. The old run also kept a recovery projection after the server recorded its explicit successor, hiding Retry for the new failure. **Expected behavior** Sync the selected folder without importing parent files or history. Keep the existing sandbox identity stable. Allow a new provider session only with proof that its exact session has never started. Let the current failed attempt retain Retry once the old recovery has a recorded successor. **Steps to reproduce** 1. Select a subfolder of a Git repository as a project workspace and start a Daytona task. 2. Leave the target region unset. Release its reusable sandbox after setup fails, then resume and realize the workspace. 3. Retry a provider setup that failed before any session directory or checkpoint was created. 4. Record an explicit successor for a native failure, fail that successor during setup, and inspect Retry in the task thread. **Paperclip version or commit** Reproduced against `8d1f0c20a` with new failing regressions before each production fix. **Deployment mode** Local controller with a Daytona environment. Automated tests use deterministic provider fixtures and real filesystem operations. Related: #13338, #13163, #13264, #13349. The open work-folder stack in #13264 includes a broader fresh-session authority change. This patch addresses the independently reproduced startup failure with existing durable bootstrap proof and atomic directory creation. It does not include the work-folder migration or credential changes from that stack. ## What Changed - Classify only the selected Git repository root as a fetch source. Sync subfolders as directories and preserve their enclosing Git ignore rules on upload and restore. Recognize the shared scheduler’s completed non-repository result so ordinary folders still sync; timeout, cancellation, and output-limit failures remain closed. - Remove the placement target from Daytona account cache identity. Keep API endpoint, credential digest, company, environment, driver, and sandbox ID boundaries. - Preserve closed-lease admission until a sentinel-verified resume reopens that same resource. - Show the already-recorded explicit successor of a resolved recovery. Keep the old failure evidence and unresolved holds. No historical status writes occur. - Permit a resumed workspace to create a new session directory only with matching durable identity, zero connections and events, untouched bootstrap commands, no backup, and an absent remote session. Claim the directory atomically. Existing, partial, or ambiguous state still blocks startup. ## Verification - Final head `c43c7403f`: [CI completed successfully](https://github.com/paperclipai/paperclip/actions/runs/34733846820/attempts/2), with 32 successful checks and 2 conditional skips. This includes every server, UI, package, serialized-route, browser, native-runner, typecheck, and build gate. Greptile reviewed the same head at [5/5 with no unresolved findings](https://github.com/paperclipai/paperclip/pull/13353#issuecomment-5650270168). - New regressions failed before each of the four production fixes. Git/archive/restore suites: 148 passed. The scheduler-wrapped non-Git regression also failed before its fix; 135 affected Git/sync/Codex tests then passed. - Daytona plugin: 230 passed, 6 opt-in live tests skipped. Native executor, projection, and TaskChatThread: 494 passed, including existing/partial state, wrong identity, prior connections or turns, backups, unavailable proof, and unresolved recovery controls. - Local full-repository typecheck, build, and token gates passed on the final head. Local CLI: 485 passed. Complete single-worker package rerun: 3,224 passed, 19 skipped. - Local verification is an aggregate with recorded retries, not one pristine green invocation: the general-server run began on `e721a920a` and finished with 12,002 passed, 3 failed, 70 skipped. Its real Codex scheduler failure is fixed above; the socket and workspace-runtime timeout failures passed unchanged in focused reruns. Both Inbox failures passed unchanged in the full 27-test Inbox file; database/shared-package failures passed in the single-worker package rerun. The supplemental local serialized-route rerun remains in progress; all five corresponding final-head CI lanes passed. - The first final-head CI attempt hit a Daytona fixture-readiness race and a signoff-browser heartbeat receipt timeout. One supported unchanged failed-job rerun passed both and the aggregate gates. Live combined user-journey verification is tracked in the related follow-up; this PR's provider tests use deterministic fixtures and real filesystem checks. ## Risks - A selected subfolder uses directory sync and does not carry parent Git history. Its ignored files stay local. - The target region remains a creation setting and part of workspace reuse policy; it does not split the account identity of an existing sandbox. - Incomplete or conflicting provider state still fails closed. This change does not erase a session, infer completed work, bypass a user decision, or replay uncertain actions. - A later remote setup failure can leave a claimed partial session directory. It remains blocked rather than being overwritten. ## Model Used OpenAI GPT-6 through Codex, with reasoning, repository tools, and code execution. The exact hosted model ID and context-window size are not exposed in this task. ## Checklist - [x] I have included a thinking path that traces from project context to this change - [x] I have specified the model used (with version and capability details) - [x] I have checked ROADMAP.md and confirmed this PR does not duplicate planned core work - [x] I have searched GitHub for duplicate or related PRs and linked them above - [x] I have either (a) linked existing issues with `Fixes: #` / `Closes: #` / `Refs: #` OR (b) described the issue in-PR following the relevant issue template - [x] I have not referenced internal/instance-local Paperclip issues or links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip` URLs) - [x] My branch name describes the change (e.g. `docs/...`, `fix/...`) and contains no internal Paperclip ticket id or instance-derived details - [x] I have run tests locally and they pass - [x] I have added or updated tests where applicable - [x] I have updated relevant documentation to reflect my changes - [x] I have considered and documented any risks above - [x] All Paperclip CI gates are green - [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups - [x] I will address all Greptile and reviewer comments before requesting merge --------- Co-authored-by: Paperclip <noreply@paperclip.ing> |
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6880213de5 |
fix(adapter-utils): honor .gitignore for referenced-project staging (#12184)
## Thinking Path > - Paperclip is the open source app people use to manage AI agents for work. > - Sandbox adapters stage project files before an agent starts. > - Referenced projects ignored Git-ignored paths and copied large local directories. > - This behavior increased staging time and disk use, and it differed from anchor workspaces. > - This pull request resolves Git-ignored paths once and shares that result across all referenced-project consumers. > - The benefit is smaller, faster, and consistent project staging. ## Linked Issues or Issue Description No public GitHub issue exists for this bug. **What happened?** Referenced-project staging copied Git-ignored paths, except for a fixed list of heavy directory names. A large repository therefore used much more time and disk space than the same repository in an anchor workspace. **Expected behavior** Referenced-project staging should exclude the same Git-ignored paths that the workspace staging path excludes. **Steps to reproduce** 1. Create a referenced project with a large Git-ignored directory. 2. Start a sandbox or SSH run that stages the referenced project. 3. Observe that the ignored directory enters the staged content. **Paperclip version or commit** Commit `9964b034bbff24e700c8eccf5a8b1fc3daa44bf2`. **Deployment mode** Built from source. ## What Changed - Resolve each referenced project's Git-ignored paths once before staging. - Carry the resolved paths as a required field on `SandboxAdditionalSource`. - Reuse the resolved paths in sandbox staging, SSH staging, and content-signature code. - Harden the read-only Git helper with a bounded process, a reduced environment, and disabled system and global configuration. - Fail closed on Git errors, timeouts, and invalid path relations. - Escape tar glob metacharacters in ignore-derived exclude entries. - Add and update unit tests for the resolver and its three consumers. ## Verification - `pnpm vitest run --config packages/adapter-utils/vitest.config.ts` passes 266 tests locally. - `pnpm exec tsc --noEmit -p packages/adapter-utils/tsconfig.json` passes locally. - CI must pass on this pull request. - Greptile must report 5/5 with no unresolved comments before merge. ## Risks - A Git error or timeout now prevents staging for the affected referenced project. - The resolver uses a bounded read-only Git process and fails closed by design. - The change stays inside `packages/adapter-utils` and does not change the database schema. ## Model Used Claude Sonnet 5 (Anthropic) assisted the implementation with code execution and tool use. The exact context window and reasoning mode are not recorded. ## Checklist - [x] I have included a thinking path that traces from project context to this change - [x] I have specified the model used (with version and capability details) - [x] I have checked ROADMAP.md and confirmed this PR does not duplicate planned core work - [x] I have searched GitHub for duplicate or related PRs and linked them above - [x] I have either (a) linked existing issues with `Fixes: #` / `Closes: #` / `Refs: #` OR (b) described the issue in-PR following the relevant issue template - [x] I have not referenced internal/instance-local Paperclip issues or links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip` URLs) - [x] My branch name describes the change (e.g. `docs/...`, `fix/...`) and contains no internal Paperclip ticket id or instance-derived details - [x] I have run tests locally and they pass - [x] I have added or updated tests where applicable - [x] I have updated relevant documentation to reflect my changes - [x] I have considered and documented any risks above - [x] All Paperclip CI gates are green - [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups - [x] I will address all Greptile and reviewer comments before requesting merge --------- Co-authored-by: Paperclip <noreply@paperclip.ing> |
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6a267e0328 |
feat(sandbox): stage referenced projects into the run sandbox (#10469)
## Thinking Path > - Paperclip is the open source app people use to manage AI agents for work > - Runs can reference more than one project > - Each referenced project must land in its own sandbox tree so one run does not mix files across projects > - The anchor workspace must keep its own git history and overlay rules > - Fail closed on sync and confinement errors, and keep the other projects alive > - This pull request stages referenced projects into isolated project directories under the run sandbox root > - The benefit is safer multi-project runs with clear failure isolation ## Linked Issues or Issue Description No public issue exists. Related PR: #10448. ## What Changed - Thread additional referenced-project sources through the run prepare path and the runtime layers. - Stage each referenced project into its own `project-<projectId>` directory under the runtime root. - Keep the anchor workspace history and overlay semantics unchanged. - Fail closed on confinement or sync errors for one project, and keep the other projects running. - Keep the path inert by default behind the multi-project workspace-sync kill-switch. - No documentation update was needed for this code-only runtime change. ## Verification - `pnpm --filter @paperclipai/adapter-utils exec vitest run src/sandbox-file-sync.test.ts src/command-managed-runtime.test.ts src/sandbox-managed-runtime.test.ts src/remote-managed-runtime.test.ts` - `pnpm --filter @paperclipai/adapter-utils exec tsc --noEmit` - The branch points at `871378e4064a95adc8e4647e442ec1359768de61` on `origin/feat/stage-referenced-projects-into-sandbox`. - GitHub CI is green on PR #10469. ## Risks - A referenced project can skip if confinement or sync fails. - A new runtime tree layout can affect tools that assume one project root. - The kill-switch keeps the path inert until operators enable it. ## Model Used OpenAI Codex, GPT-5, tool use enabled. ## Checklist - [x] I have included a thinking path that traces from project context to this change - [x] I have specified the model used (with version and capability details) - [x] I have checked ROADMAP.md and confirmed this PR does not duplicate planned core work - [x] I have searched GitHub for duplicate or related PRs and linked them above - [x] I have either (a) linked existing issues with `Fixes: #` / `Closes #` / `Refs #` OR (b) described the issue in-PR following the relevant issue template - [x] I have not referenced internal/instance-local Paperclip issues or links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip` URLs) - [x] My branch name describes the change (e.g. `docs/...`, `fix/...`) and contains no internal Paperclip ticket id or instance-derived details - [x] I have run tests locally and they pass - [x] I have added or updated tests where applicable - [x] I have updated relevant documentation to reflect my changes or confirmed no docs update was needed - [x] I have considered and documented any risks above - [x] All Paperclip CI gates are green - [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups - [x] I will address all Greptile and reviewer comments before requesting merge --------- Co-authored-by: Paperclip <noreply@paperclip.ing> |
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341993ebae | feat(sandbox-runtime): route all inbound staging through client.syncIn (Codex home -> native uploadFiles; delete usesCustomProvision gate) (#10354) | ||
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b247bf7150 |
feat(runtime): opt-in sandbox file-sync lifecycle hooks (API + provider docs) (#10013)
## Thinking Path > - Paperclip is an open-source AI-agent management platform; agents run tasks inside sandboxed environments (Daytona, Kubernetes, E2B, etc.) > - The control-plane ↔ sandbox file-transfer path flows through the `environmentExecute` seam in `protocol.ts` — the only verb available to plugins — which forces a base64-over-exec chunked loop for every file move: workspace files, assets, Codex home sync > - This transport is correct and safe, but it bypasses provider-native bulk/streaming APIs (Daytona `uploadFiles`, K8s `FastUploadInterceptor` / volume mounts), leaving significant throughput on the table for large workspaces > - The right fix is an opt-in seam extension: providers with faster native transfer declare two optional verbs; providers that do not opt in stay on the existing fallback with zero code or behavior change required > - This PR adds the first layer of that extension — two optional verbs (`environmentSyncIn` / `environmentSyncOut`) in the plugin SDK, the runtime plumbing to prefer the native path for the two clean destroy-then-replace cases, and a doc for the contract > - The core correctness invariant is byte-identical fallback: if no provider opts in, execution is exactly what ships today; `assertSyncOperationsConfined` enforces host-side path confinement for providers that do opt in > - No provider advertises the verbs yet → zero production behavior change; future PRs wire up Daytona and K8s providers against this contract ## Linked Issues or Issue Description No public GitHub issue exists for this feature. Description follows the `feature_request` issue template: **Subsystem affected:** packages/plugins — plugin system; packages/adapter-utils — adapter runtime; server/ — EnvironmentRuntimeService **Problem or motivation:** Sandbox file transfers currently always use a base64-over-exec chunked loop regardless of what the underlying provider supports. For workspaces larger than a few MB this becomes the dominant wall-clock cost of every sandbox run, and it bypasses bulk/stream APIs that providers like Daytona already expose natively. **Proposed solution:** Add two optional, opt-in plugin hooks — `onEnvironmentSyncIn` / `onEnvironmentSyncOut` — to the plugin SDK. When a provider defines both hooks and both are advertised via the existing `supportedMethods` negotiation, the runtime prefers the native path for the two clean destroy-then-replace transfer cases; all other cases fall back to the existing byte-identical base64 transport. **Alternatives considered:** An unconditional verb would require every provider to implement or stub the verb. The opt-in / `METHOD_NOT_IMPLEMENTED` pattern (already used by `environmentExecute`) preserves backward compatibility with zero provider changes required. **Roadmap alignment:** Consistent with the ✅ "Cloud / Sandbox agents" and ✅ "Plugin system" milestones; extends the plugin seam rather than adding control-plane-level logic. **Additional context:** Searched open pull requests and issues for duplicate sandbox file-sync / native-transfer work; none found. ## What Changed - **`packages/plugins/sdk`** - `protocol.ts`: two new optional `HostToWorkerMethods` — `environmentSyncIn` / `environmentSyncOut` — plus generic `SyncOperation`, `SyncFileMapping`, and `SyncOutcome` types - `define-plugin.ts`: optional `onEnvironmentSyncIn` / `onEnvironmentSyncOut` fields on `PluginDefinition`; worker advertises each verb only when its hook is defined (else `METHOD_NOT_IMPLEMENTED`, mirroring `environmentExecute`) - `worker-rpc-host.ts`: route new verbs to plugin hooks - `index.ts`: re-export new public types - **`packages/adapter-utils`** - `command-managed-runtime.ts`: expose optional `syncIn` / `syncOut` on `CommandManagedRuntimeRunner` (available only when both verbs are advertised); add `assertSyncOperationsConfined` host-side path-confinement guard - `sandbox-managed-runtime.ts`: `SandboxManagedRuntimeClient` gains optional `syncIn` / `syncOut`; orchestrator prefers native path for default-provision asset inbound and workspace-download-into-fresh-dir outbound; all other paths keep the existing base64 fallback - `sandbox-file-sync.test.ts` (new): 234-line characterization suite — native-opt-in branch, fallback branch, `assertSyncOperationsConfined` escape-path rejection, `followSymlinks` → tar `-h` - `command-managed-runtime.test.ts`: negotiation + native-sync + confinement tests - **`server/src/services/environment-runtime.ts`**: `EnvironmentRuntimeService` delegates to `syncIn` / `syncOut`, gated on advertised support - **`server/src/services/environment-execution-target.ts`**: minor typing fix alongside the new verbs - **`doc/plugins/SANDBOX_FILE_SYNC_HOOKS.md`** (new): documents the full contract — opt-in / no-op guarantee, operation ordering, provider-may-tar, atomicity, `followSymlinks`, secret modes (0600, no window), path confinement, `operationId` opacity, resource bounds, shell-quoting ## Verification ```bash # SDK suite pnpm --filter packages/plugins/sdk test # Adapter-utils suite (includes new sandbox-file-sync characterization tests) pnpm --filter packages/adapter-utils test # Expected: 255 pass / 4 skip # Type-check across affected packages pnpm --filter packages/plugins/sdk typecheck pnpm --filter packages/adapter-utils typecheck # Server changed-file spot check: cd server && npx tsc --noEmit --skipLibCheck 2>&1 | grep -E "environment-(runtime|execution-target)" | head -20 ``` Key behavioral invariant to spot-check: with no provider opting in (the current state), run any sandbox task and confirm file-transfer behavior is byte-for-byte identical to what the pre-PR code produces. The characterization tests assert this at the unit level. ## Risks - **Zero production risk today**: no provider advertises `environmentSyncIn` / `environmentSyncOut`, so the new code paths are unreachable in production; all real traffic stays on the existing base64 fallback - **Path confinement**: `assertSyncOperationsConfined` rejects any `targetPath` that escapes the declared root — this is the primary security boundary for future providers. The test suite covers escape-path rejection - **Atomicity**: the contract delegates atomicity to providers; the doc explicitly calls out that directory-level ops are not guaranteed atomic - **Secret transport**: credential assets (e.g., Codex `auth.json`, directory mappings) continue to use the existing tar path — they do not go through the new verbs in any current provider > For core feature work, check [`ROADMAP.md`](ROADMAP.md) first and discuss it in `#dev` before opening the PR. Feature PRs that overlap with planned core work may need to be redirected — check the roadmap first. See `CONTRIBUTING.md`. ## Model Used Provider: Anthropic Model: `claude-sonnet-4-6` (Claude Sonnet 4.6) Context window: 200 K tokens Capabilities: extended tool use, multi-file code generation, agentic reasoning via the Paperclip agent framework ## Checklist - [x] I have included a thinking path that traces from project context to this change - [x] I have specified the model used (with version and capability details) - [x] I have checked ROADMAP.md and confirmed this PR does not duplicate planned core work - [x] I have searched GitHub for duplicate or related PRs and linked them above - [x] I have either (a) linked existing issues with `Fixes: #` / `Closes: #` / `Refs: #` OR (b) described the issue in-PR following the relevant issue template - [x] I have not referenced internal/instance-local Paperclip issues or links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip` URLs) - [x] My branch name describes the change (e.g. `docs/...`, `fix/...`) and contains no internal Paperclip ticket id or instance-derived details - [x] I have run tests locally and they pass - [x] I have added or updated tests where applicable - [x] I have updated relevant documentation to reflect my changes - [x] I have considered and documented any risks above - [x] All Paperclip CI gates are green - [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups - [x] I will address all Greptile and reviewer comments before requesting merge --------- Co-authored-by: Harold Kim <harold@paperclip.ing> Co-authored-by: Paperclip <noreply@paperclip.ing> |