Commit Graph
7 Commits
Author SHA1 Message Date
DottaandPaperclip 2cc7992369 Share the external Runner lifecycle and add strict Muse contracts (#16444)
Add the external Runner foundation with distinct Dot/Grok V6, canonical home-mode V7 and Muse V8 contracts.

Keep generated schemas and profiles synchronized. Bound default question-answer command IDs in a disjoint namespace while preserving existing IDs and durable replay. Preserve canonical migration history and add normally generated, replay-safe Muse schema milestones with literal preview-history fixtures.

Refs #16444.

Co-Authored-By: Paperclip <noreply@paperclip.ing>
2026-10-16 13:46:50 -05:00
DottaandPaperclip 3898f6a45f fix(native): honor duplex transport for GitHub callback bridges (#16455)
## Thinking Path

> - Paperclip is the open source app people use to manage AI agents for
work.
> - Native remote runners use a session-owned broker for managed GitHub
operations.
> - That broker uses the existing authenticated sandbox callback bridge.
> - The native caller omitted the server-selected duplex flag. An
enabled and capable target still used file polling.
> - Warm sessions must observe a changed flag and channel loss before
the next admission.
> - This pull request forwards the existing flag and retires unavailable
or changed bridges before retained instruction preparation.
> - The benefit is less idle remote traffic without changing credential
authority or the default transport.

## Linked Issues or Issue Description

**What happened?**

A native GitHub callback bridge selected `queue_v1` even when its
sandbox target had duplex enabled and supported it. The file bridge
continues remote queue checks while the warm session remains available.

**Expected behavior**

An enabled, capable target should use the existing HTTP/2 bridge.
Disabled or unsupported targets and failed channel startup must retain
the authenticated file fallback. A changed server flag must take effect
at the next normal warm-session boundary.

**Steps to reproduce**

1. Create native GitHub access on a sandbox target with the
server-selected duplex flag enabled, verified duplex capability and a
working channel.
2. Observe the selected callback transport.
3. Before this fix, it is `queue_v1`. The added real-wire regression
expects `http2_v1` and fails on the old source.

## What Changed

- Forward the existing server-selected duplex flag through the native
GitHub broker.
- Record that transport selection on the broker. Retire the warm
provider and broker through the existing cleanup path when the flag
changes.
- Read live channel failure when checking broker readiness. Mark normal
session cleanup as an orderly completion.
- Include the selected flag in instruction preparation identity. Retire
a failed broker before adopting retained instructions, while preserving
existing ownership and cleanup fences.
- Add real local HTTP/2 credential-rotation and file-fallback controls.
Add native warm-session flag-change controls.
- Document selection, fallback and warm-session behavior.
- Scan CI secret expressions in one forward pass, including quoted
braces and escaped apostrophes. Preserve direct, bracket, multiline and
whole-context references while rejecting filename and literal-string
false positives.

## Verification

- Current head `41440b07ea45e9e882e36ed495a66e501c8dd4df` resolves the
actual CI-policy conflict with master
`307eb16c0c59abd9e0626fde9201939b262e7f5f`. It retains upstream's
stricter whole-expression credential guard, including quoted secret
text, and uses the forward scanner instead of a backtracking regex. All
**16 CI policy tests** pass, including the bounded 28- and
10,000-apostrophe controls in both policy modes. The reported old regex
still has its recorded two-second timeout (14 passed, one failed). On
this final merged source, **809 affected native cases** pass with zero
selected skips (65.20s). Full repository typecheck (31.44s) and build
(22.13s) pass. Frozen source hashes stayed unchanged. Fresh exact-head
full CI, configured security and completed Apex remain pending.

- Before master integration, the frozen native repair passed repository
`pnpm -r typecheck` passed (33.0s) and `pnpm build` passed (32.1s).
- Before the latest master integration, all **800 affected cases passed
with zero selected skips**: complete native executor (725), resume (50),
GitHub broker (16), environment duplex-gate (4), and heartbeat
instruction-copy (5) suites. The final run took 95.3s. Source hashes
stayed unchanged through these checks.
- The initial head passed 788 affected cases and full CI, but Apex
scored it **3/5**. It found a dead HTTP/2 broker could remain reusable
and a flag change could fail after retained instruction preparation.
Both findings required the new repair. Three added before-fix
regressions failed on channel availability, orderly close, and
preparation identity.
- The first repair run failed three new warm-instruction fixtures
because fake provider close left its recorded state ready. The corrected
fixture writes a suspended checkpoint without weakening the production
ownership guard. A separate real-wire run then failed two availability
assertions because its helper spread had frozen the readiness getter.
The helper now preserves the getter. All failed attempts remain in the
local evidence.
- One disposable real Daytona sandbox exercised both transports on the
initial transport patch through the production native broker and
callback bridge. The provider shell wrapper used the then-current
production declarations. During equal two-second idle windows, file mode
issued **9 remote commands** and HTTP/2 issued **0**. Both variants
rotated synthetic credentials between two run bindings and denied idle
requests. Cleanup deleted the sandbox.
- Daytona component setup took 3.64s for file mode and 4.74s for HTTP/2.
This is an idle-traffic reduction, not a startup-speed claim. That
component run predates the availability and preparation repair; it does
not qualify the repaired paths on Daytona. The new failure controls use
a real local HTTP/2 channel. The credential resolver was synthetic and
no model was called. Real GitHub-account grants, staging replies, and
the end-to-end latency target remain unverified by this component test.
- Repaired-head CI found a policy-test false positive: a broad
`secrets.` regex matched an upstream filename. The unchanged test
reproduced the failure, and the corrected version passed all 15
controls. Master later supplied a stronger direct/bracket check, which
we retained when resolving the merge conflict. Review then found that
formatted expressions could stop that check at a quoted brace. The new
reported-case baseline failed (one failed, 14 passed). The final check
treats quoted strings as complete tokens, respects expression
boundaries, and passes all 15 cases. The later master conflict also
added `toJSON(secrets)` controls. The old branch pattern failed that
whole-context case. Review subsequently found exponential backtracking
with escaped apostrophes; the final forward scanner retains the
quoted-boundary and whole-context controls and passes all 15 tests,
including the bounded long-expression regression. No workflow or
credential handling changed. All failed attempts remain recorded.

- The full local repository test suite was not rerun. [Prior-head full
CI](https://github.com/paperclipai/paperclip/actions/runs/38775801821),
including `ci / verify` and `ci / e2e`, passed on previous head
`e5f8bdb425081cf08110c0f7423f96609e405920`. All 52 check runs succeeded,
two optional Storybook jobs skipped, and legacy Snyk passed. Completed
Apex review is **5/5** on that exact head, with no unresolved review
threads.

## Risks

- Only an explicit server-selected opt-in can use HTTP/2. The existing
provider-capability, channel-startup and authenticated file-fallback
checks remain in the shared bridge.
- Toggling the flag or losing the HTTP/2 channel replaces an idle
retained provider at the next run boundary. Instruction preparation must
make the same retirement decision. Normal ownership, settled history and
cleanup checks remain in effect.
- Lower idle traffic may reduce provider/controller pressure, but no
staging latency improvement is claimed. This feature remains inactive
when the existing flag is off. Other preparation and finalization costs
remain.
- No schema, API, UI, credential-selection, tracing endpoint or
default-setting changes.

## Model Used

- OpenAI Codex, based on GPT-6, with tool-assisted reasoning and code
execution. The exact hosted snapshot ID and context-window size are not
exposed in this session.

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have searched GitHub for duplicate or related PRs and linked
them above
- [x] I have either (a) linked existing issues with `Fixes: #` / `Closes
#` / `Refs #` OR (b) described the issue in-PR following the relevant
issue template
- [x] I have not referenced internal/instance-local Paperclip issues or
links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip`
URLs)
- [x] My branch name describes the change (e.g. `docs/...`, `fix/...`)
and contains no internal Paperclip ticket id or instance-derived details
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [ ] All Paperclip CI gates are green
- [ ] Greptile is 5/5 with no open P2s, recommendations, or follow-ups
- [x] I will address all Greptile and reviewer comments before
requesting merge

---------

Co-authored-by: Paperclip <noreply@paperclip.ing>
2026-10-15 15:15:55 -05:00
DottaandPaperclip 307eb16c0c perf(ci): avoid duplicate extraction in public install checks (#16460)
## Thinking Path

> - Paperclip manages AI agents for work.
> - Contributors wait for CI before they can deliver changes.
> - After #16434, Build is the longest CI job.
> - Its clean public npm install spends about 90 seconds installing
packed artifacts.
> - npm extracts local archives to read metadata before it installs
them.
> - Serve metadata from those same packed artifacts, then let normal npm
verify and install their bytes once.
> - Preserve the offline lifecycle and runtime checks, and measure the
complete workflow.

## Linked Issues or Issue Description

Refs #16434 and #16429.

**Current behavior:** The Linux Build check installs every staged
package by local tarball path. npm's file fetcher extracts an archive to
obtain its manifest. Installation then extracts it again. In the last
green run, Build took 408 seconds; consumer installation took 89.7
seconds. The full workflow took 8m06s.

**Proposed behavior:** Read manifests directly from the packed archives.
Serve those manifests and their SHA-512-bound tarballs from a temporary
registry on container loopback. Use normal npm installation into the
empty consumer. Other packages still resolve from the public npm
registry.

**Alternatives:** More parallel jobs would add setup and transfer work.
Skipping the install or runtime probes would remove useful coverage.
This change removes duplicate extraction instead. It does not add a
product feature or duplicate a roadmap item.

## What Changed

- Build a registry catalog from the actual tarball manifests and archive
hashes.
- Run the short-lived registry and npm in the existing unprivileged
download container. No host port is exposed.
- Preserve public dependency tarball URLs, archive integrity checks,
disabled initial lifecycle scripts, the offline rebuild, lock checks and
all Codex, Grok and Pi probes.
- Close the registry before offline verification. Keep native ARM and
Mac install qualification unchanged.
- Add real npm parity and failure tests. Record metadata preparation
time in the existing timing receipt.
- Fix an existing policy false positive: the filename
`docker-compose-secrets.test.mjs` is not a workflow credential. Inspect
GitHub expressions and retain rejection of Honeycomb keys, dot/bracket
secret reads and `toJSON(secrets)`.

## Verification

- 31 focused install-contract checks pass on Node 24.21.0. All 16
targeted CI profile-policy tests also pass.
- Real npm file and registry installs produce identical installed files,
bundled dependencies, optional dependencies and executable links. Both
defer lifecycle execution; offline rebuild works after the registry
closes and preserves the lock.
- npm rejects an archive whose gzip header changes while its extracted
payload remains valid. The CLI propagates the failure.
- The permanent real-npm parity test now includes non-catalog
`is-number@7.0.0`. Both paths install it from its official npmjs
tarball, and the test asserts the lock URL. Fetches have a 10-second
bound and no retries. This addresses the first Greptile finding. A
separate live probe also confirmed public provenance.
- The first local run hit the host sandbox's loopback `EPERM`; the same
checks passed with local listener access. An initial corrupted-gzip
negative fixture hit decompression failure before integrity
verification; the final fixture preserves valid gzip and specifically
proves integrity rejection. An old command-shape assertion was updated
for the new entry point without removing its ordering checks.
- The [first CI
run](https://github.com/paperclipai/paperclip/actions/runs/38778371043)
passed all test lanes and Build, but the existing credential-guard false
positive failed policy and both aggregates. Its 7m25s full duration is
**not** counted as a passing performance sample. The guard repair and
public-download regression are on the new head.
- The real Linux install passed all 18 packed packages, the lifecycle
sentinel, offline rebuild, unchanged lock, official Codex payload/lease
checks, Grok missing/present checks and Pi admission. The receipt
confirms `artifactTransport: loopback-registry`. No provider calls ran.
- Compared with the previous green run, consumer install fell **89.72s →
66.29s** (26.1%), including 1.87s to prepare metadata. Build fell **408s
→ 374s**. Both Build hosts were `m7i-flex.xlarge`; these are separate
runs, so registry/cache and upstream changes remain confounders.
- The base advanced since the previous 8m06s run, including runtime and
test changes. Treat that duration as historical context, not an
identical-source control.
- Pre-conflict head `d8f9de1c` [passes all 48 workflow
jobs](https://github.com/paperclipai/paperclip/actions/runs/38779549190),
including both required branch-protection checks. Greptile is **5/5** on
this head; its review thread is resolved. The non-required Superagent
Security Scan is still running.

| Measurement | Previous green run | Final green run | Observed change |
| --- | ---: | ---: | ---: |
| Full CI, workflow creation through final aggregate | 8m06s | **7m35s**
| **31s shorter (6.4%)** |
| Build job execution | 408s | **389s** | **19s shorter** |
| Clean consumer install, including catalog preparation | 89.72s |
**69.69s** | **20.03s less (22.3%)** |

The final catalog preparation took 1.87s and is included in the install
figure. Both Build hosts were `m7i-flex.xlarge`. Build began 42 seconds
after workflow creation instead of 53 seconds in the historical run, so
faster queue/setup admission explains part of the 31-second total.
Upstream code also advanced; these measurements are not a controlled
causal estimate of the complete gain. The two candidate install
measurements (66.29s and 69.69s) support the narrower reduction in
install work. No tests or runtime probes were removed.

- Conflict-resolution head `ea8287b81` [passes all 48 workflow
jobs](https://github.com/paperclipai/paperclip/actions/runs/38789785045),
including both required gates. Greptile re-reviewed this exact head at
5/5, with the sole earlier thread resolved. The conflict was the
independent filename-policy fix; the stronger expression guard is
retained. This run took **8m04s** overall, Build 423s, consumer
installation 80.56s and bundled-server staging 31.17s. This confirms
meaningful run variance: the earlier 7m35s is a sample, not a guaranteed
new wall-clock duration.

- A second independent master update touched the same credential test.
Final head `1c740b73e` resolves that conflict while retaining the same
stronger guard. [All 48 jobs
pass](https://github.com/paperclipai/paperclip/actions/runs/38792983313);
Greptile re-reviewed this exact head at 5/5. This run took **7m32s**
overall, Build **385s**, consumer install **67.62s**. Auto-merge is
enabled but GitHub requires code-owner approval.

## Risks

The initial install now uses registry package specs instead of file
specs. The parity test checks the resulting installed bytes. Full CI
must still exercise real bundled provider graphs and all offline probes.
The temporary consumer lock contains loopback artifact URLs; it is not
exported or reused for another installation. Native release consumers
retain their existing artifact install path. Queue, host and cache
variance limit attribution from separate workflow runs.

## Model Used

OpenAI GPT-6 through Codex, with repository inspection, execution and
GitHub tools. The serving model suffix and context capacity are not
exposed to this session.

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have searched GitHub for duplicate or related PRs and linked
them above
- [x] I have either linked existing issues or described the issue in
this PR
- [x] I have not referenced internal or instance-local Paperclip issues
or links
- [x] My branch name describes the change and contains no private ticket
identifier
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [x] I have updated relevant documentation
- [x] I have considered and documented the risks
- [x] All Paperclip CI gates are green (48 jobs and both required gates
on conflict-resolution head)
- [x] Greptile is 5/5 with no open P2s, recommendations or follow-ups
- [x] I will address all Greptile and reviewer comments before
requesting merge

---------

Co-authored-by: Paperclip <noreply@paperclip.ing>
2026-10-15 14:52:15 -05:00
DottaandPaperclip 5ec93dae01 fix(connectors): avoid redundant run preparation discovery (#16461)
## Thinking Path

> - Paperclip is the open source app people use to manage AI agents for
work.
> - Run preparation selects connector skills and tools under current
permissions.
> - An assignment check can build an unrelated company tool catalog and
wait for a shared discovery slot.
> - Native startup repeats assignment discovery to obtain static tool
definitions.
> - Slack also locks and reconciles an unchanged catalog, then repeats
task authorization.
> - This pull request removes that redundant startup work and preserves
live checks at tool execution.
> - The benefit is less preparation work, less contention, and unchanged
permission and approval enforcement.

## Linked Issues or Issue Description

Related: #16454 (detailed preparation tracing), #16425 (workspace
preparation performance).

**What happened?**

Connector configuration added avoidable work to run preparation. Browser
Use assignment authorized the whole company catalog, including other
connector families. Four connector resolvers ran in series. Native
controller startup repeated all assignment resolution when any connector
skill was pinned. Slack reconciled an unchanged catalog under an
advisory lock and checked task authority twice.

**Expected behavior**

Prepare only the connector data needed by the run. Reuse static tool
definitions from pinned skills. Preserve current company, assignment,
identity, profile, policy, grant, and approval checks when an operation
executes.

**Steps to reproduce**

1. Configure Browser Use and an unrelated MCP catalog with 500 tools for
one company.
2. Resolve Browser Use resources for an authorized task. The old path
reads and authorizes the unrelated catalog.
3. Occupy both full discovery slots. The old assignment check waits for
those slots.
4. Resolve a linked Slack task repeatedly with an existing current
catalog. The old path still acquires a catalog lock and repeats
authority checks.

**Paperclip version or commit**

Base: `68a09dcb5f50e3fb6ceaaeac2706d96db97fc9b3`.

**Deployment mode**

Observed in hosted native runs. The local reproduction uses a source
checkout and real embedded PostgreSQL.

## What Changed

- Restrict Browser Use catalog reads and policy decisions to active
Browser Use connections. Preserve guest restrictions, reviewed catalog
filters, live grants, and deterministic resource order. Keep assignment
checks out of the full discovery queue.
- Resolve the four independent connector families concurrently. Wait for
outstanding work to settle before propagating a failure, and retain
registration order.
- Register native direct connector tool definitions from pinned
connector skills. Keep live assignment resolution and governed execution
on every tool call.
- Compare Slack catalog hashes before reconciliation. Current catalogs
skip the catalog transaction and lock. Check task authority once after
current profile checks. Initial setup and upgrades retain locked
reconciliation and checks before and after it.
- Precompute immutable bundled Slack descriptor hashes. Preserve
disabled entries, profile state, removed bindings, and review metadata.
- Document the startup paths and add focused contention, revocation,
catalog upgrade, and failure-settlement regressions.
- Repair a pre-existing CI guard false positive: the filename
`docker-compose-secrets.test.mjs` matched `secrets.`. Check GitHub
secret expressions instead, with dot, bracket, and whole-context
controls. No workflow changes.

## Verification

- Conflict resolution: merge `b1566ca494f4af6e8d4418fa37393c5caee02582`
from master into head `55140b1609ae7bd21a038eb75a48c2683299e4b4`.
Combine both secret-expression guards and regression cases. Preserve
current workspace, native recovery, and Daytona changes. All 467 policy
tests, 787 focused native/connector/Browser Use tests, and server
typecheck passed locally after integration. Fresh full CI passed all 55
checks on this head, with two optional Storybook jobs skipped. Greptile
reviewed this exact head at 5/5 with no unresolved threads.

- `pnpm -r typecheck` — passed.
- `pnpm build` — passed.
- Focused native startup, connector concurrency, and AgentMail suites —
763 tests passed.
- Complete Browser Use suite — 33 tests passed. Focused Slack catalog,
linked task, retained provenance/revocation, and pinned native tool
tests passed. The complete runner tool authority suite passed (26
tests). The 1,337-case chat suite passed 1,335 tests and had two
failures: the original new transaction-count assertion and a 15-second
timeout in the publication-batch case. Both cases passed an isolated
rerun. The publication timeout occurred during concurrent local checks;
the passing rerun does not erase it. CI must still pass the chat shards.
- The first focused run found two incorrect new assertions: policy
evaluation performs a second catalog lookup, and an explicit allow
policy overrides a profile default. The tests now distinguish the scoped
catalog query and revoke the governing policy. The focused Browser Use
rerun passed all 33 cases after these assertion fixes.
- Full-suite test verification used the CI shards of `pnpm test:run`.
Local runs focused on the changed boundaries; the complete repository
test command was not duplicated locally.
- `node --test '.github/scripts/tests/*.test.mjs'` — all 467 policy
tests passed. The CI failure reproduced on the unchanged base guard
before this correction. Actual GitHub secret expressions still match the
guard.
- CI on the final head passed all chat shards, typecheck, build, Runner
checks, browser shards, and other test lanes. One existing
workspace-runtime case hit `EADDRINUSE` for a randomly selected test
listener in server shard 1/12 (1,162 tests passed in that shard). The
shard passed its single retry on the same SHA with no source changes.
The first failure remains recorded here. Previous reviewed head
`7191ac40691ddb1ef38b86665c95cc14c57ea390`: all 55 checks passed, two
optional Storybook jobs skipped, and no pending or failed checks.
Greptile is 5/5 on this head with no unresolved review threads. The
external security scan passed.

Local before/after measurements use the old and new implementations
against the same fixture. Both paths are warmed. Seven samples alternate
execution order. The database is real embedded PostgreSQL. No latency is
injected. These measurements do not establish hosted speed.

| Local path | Before median (range) | After median (range) | Work
reduction |
| --- | --- | --- | --- |
| Browser Use assignment with 500 unrelated MCP tools | 44.020 ms
(33.994–107.328) | 26.502 ms (20.385–99.037) | 26 → 22 statements;
unrelated catalog and discovery queue removed |
| Slack assignment with current catalog and linked responsible user |
49.723 ms (43.624–80.653) | 22.141 ms (19.781–30.818) | 5 → 2 database
transactions; no catalog lock on the current path |

The contention regression fails against the old implementation after a
bounded five-second wait, then passes against the optimized
implementation. It occupies the real global discovery scheduler and
verifies that Browser Use assignment completes without releasing those
slots. It records catalog SQL to verify connection scope. Revocation
cases remove policy, catalog availability, and grants between calls.
Existing Slack integration cases exercise retained provenance, removed
profile bindings, identity revocation, approved writes, and current
responsible-user restrictions.

## Risks

- Pinned native tool definitions can remain visible after access is
revoked. They confer no authority. Invocation rechecks current
assignments and fails closed before an operation executes. Newly
available connector families still require a newly admitted skill
selection.
- Concurrent resolution can increase instantaneous database reads to
four connector families per configuration call. It is a fixed bound.
Outstanding work settles before a failed preparation returns.
- Slack skips reconciliation only when all bundled version hashes and an
existing profile match. Missing or changed definitions still use the
existing locked path. Operator revocations remain effective.
- This PR addresses connector preparation. Workspace transfer, provider
startup, copyback, and queue delay can still keep total latency above
the user's goal. Hosted improvement needs a deployed before/after trace.
- No schema, lockfile, workflow, telemetry event, or authorization cache
changes.

## Model Used

OpenAI GPT-6 (Codex), with reasoning, repository inspection, code
execution, and GitHub tools. The runtime does not expose the exact
serving model ID or context window.

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have searched GitHub for duplicate or related PRs and linked
them above
- [x] I have either (a) linked existing issues with `Fixes: #` / `Closes
#` / `Refs #` OR (b) described the issue in-PR following the relevant
issue template
- [x] I have not referenced internal/instance-local Paperclip issues or
links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip`
URLs)
- [x] My branch name describes the change (e.g. `docs/...`, `fix/...`)
and contains no internal Paperclip ticket id or instance-derived details
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [x] All Paperclip CI gates are green
- [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups
- [x] I will address all Greptile and reviewer comments before
requesting merge

---------

Co-authored-by: Paperclip <noreply@paperclip.ing>
2026-10-15 14:08:01 -05:00
DottaandPaperclip 59a70dc9e2 fix(workspaces): expire reproducible Git files and restore exact commits (#16457)
## Thinking Path

> - Paperclip manages AI agents and their task workspaces.
> - Isolated Git worktrees and private repository copies remain on the
host after tasks finish.
> - These files can fill the disk even when every commit is available
upstream.
> - Cleanup must retain unique files, local Git state, live work, and
recovery data.
> - This pull request records and verifies an exact-commit restoration
recipe before expiration.
> - Normal reopening restores that commit even after upstream advances.
> - The benefit is lower host disk use while finished tasks remain
available for later work.

## Linked Issues or Issue Description

Refs #10285 and #2022. Follows #16433 for skill-cache expiration.
Related #11936 provides separate host-local cleanup tooling; this change
extends the existing company-scoped lifecycle worker and normal
workspace reopening. ROADMAP.md does not specify a competing
implementation.

## What Changed

- Add opt-in expiration for verified Paperclip-owned Git worktrees after
their whole task tree has been done or cancelled for 24 hours.
- Preserve active and scheduled runs, previews, pending reopening,
unresolved recovery, dirty files, unknown ignored files, and unsupported
or unique Git state.
- Verify an authenticated fetch in a fresh object store. Save repository
identity, exact commit, branch, and ownership before any deletion.
- Rename eligible files into recorded managed trash. Resume interrupted
cleanup under source and lifecycle locks.
- Expire private base clones only after consumer, file, reference,
reflog, and object checks pass. Preserve shared project base clones.
- Rebuild missing bases and worktrees through normal reopening at the
recorded commit. Return an explicit retryable error when repository
access fails.
- Add independent workspace/base switches, dry-run reports,
reclaimed-byte counts, and operational documentation. No table, public
API, UI, or recovery-retention change.

## Verification

- Real local bare remote plus Postgres: create at A, advance upstream to
B, expire the worktree and private base, reopen at A, then make and
retain a subsequent commit.
- Final lifecycle suite: all 20 tests passed in 46.41 seconds at
`d72947a2e45be5d0c912debb03c46b15863b4798`. Review fixes cover
second-cycle expiration, newer-branch recovery, normal preparation after
restoration, branch adoption, and Git administration path controls.
Eleven existing branch reconciliation controls also passed. Covers
unique files and Git state, live descendants, scheduled runs, recovery,
previews, unauthorized access, upstream failure, concurrent reopening,
interrupted deletion, shared bases, and nested private worktrees.
- Final guard regressions: 3 affected tests passed. Existing
workspace/runtime/preparation/source controls: 328 tests passed in
238.69 seconds.
- Full repository typecheck and build passed locally. The full local
test attempt did not pass: initial native-session cases hit macOS
Postgres shared-memory exhaustion, source changes invalidated two
discovery cases, and the checkout disappeared near the end. The
final-code retry of the remaining skill and unrelated controls passed
all 103 tests. All checks passed on this exact head, including
typecheck, general and serialized tests, Runner checks, build, canary
dry-run, browser E2E, and security scans. Greptile reviewed the head at
5/5 with all findings resolved.
- Fixed a blocking CI policy false positive for
`docker-compose-secrets.test.mjs`. The test still rejects GitHub secret
expressions, including dot, bracket, and multiline forms. Its full
15-test suite passes.
- Map validation and `git diff --check` passed.
- Staging dry-run inspection, measured reclamation, and ordinary product
acceptance remain pending. No live acceptance is claimed.

## Risks

- Git restoration depends on continued upstream availability and
credentials. Cleanup skips unverified commits; restoration never
substitutes the default branch.
- File deletion requires multiple conservative proofs. Unknown or
unsupported state is retained and can limit reclamation.
- Source and lifecycle locks serialize preparation, reopening, and
expiration. Remote verification has a deadline but can delay work on the
same source.
- Start with both expiration switches disabled. When enabled, dry-run
remains the default. Rollback disables further deletion while retaining
restoration support.

## Model Used

OpenAI GPT-6 through Codex, with reasoning, repository inspection, tool
use, and code execution. The exact backend model ID and context-window
size are not exposed in this session.

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have searched GitHub for duplicate or related PRs and linked
them above
- [x] I have either (a) linked existing issues with `Fixes: #` / `Closes
#` / `Refs #` OR (b) described the issue in-PR following the relevant
issue template
- [x] I have not referenced internal/instance-local Paperclip issues or
links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip`
URLs)
- [x] My branch name describes the change (e.g. `docs/...`, `fix/...`)
and contains no internal Paperclip ticket id or instance-derived details
- [x] I have run tests locally and they pass (focused tests; full local
limitation documented above)
- [x] I have added or updated tests where applicable
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [x] All Paperclip CI gates are green
- [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups
- [x] I will address all Greptile and reviewer comments before
requesting merge

---------

Co-authored-by: Paperclip <noreply@paperclip.ing>
2026-10-15 13:09:59 -05:00
DottaandPaperclip 7420af26fc fix(ci): finish large Honeycomb profile exports (#16423)
## Thinking Path

> - Paperclip uses pull request CI to check changes before merge.
> - The merged CI profiler records a selected full PR suite in
Honeycomb.
> - A real 48-job profile exposed an export failure after Honeycomb
accepted only part of the trace.
> - The same run exposed three fixture subprocesses that looked like
incomplete test launches, one direct reporter without a launcher marker,
and one overlong test name.
> - The exporter needs to handle temporary ingest rejection without
sending accepted spans again.
> - This pull request fixes those cases and documents the trace display
limit.
> - The benefit is a complete, checkable CI waterfall with test-file
timings.

## Linked Issues or Issue Description

**What happened?**

The first live `profile-ci` run on #16423 completed all 48 jobs, but the
post-run exporter stopped when Honeycomb rejected part of a batch. The
initial trace had no root span. Its coverage flag also reported four
unfinished invocations and one invalid timing record.

**Expected behavior**

The exporter should pace large uploads, retry only temporarily rejected
events, and publish the root after every child is accepted. Completed
reporters should count as complete. Long test names should not erase
test timing.

**Steps to reproduce**

1. Add `profile-ci` to a CI CODEOWNER PR with the merged profiler.
2. Run the full PR suite, as in [run
38732093469](https://github.com/paperclipai/paperclip/actions/runs/38732093469).
3. Inspect the separate [failed exporter
run](https://github.com/paperclipai/paperclip/actions/runs/38733393370)
and the trace coverage fields.

**Paperclip version or commit**

`12612b06eb4332844ac4c8770a1fb6c6b7eccbc9` (PR run head, based on merged
#16378).

## What Changed

- Pace Honeycomb uploads and retry only transiently rejected events from
each batch.
- Preserve overlong test timings with bounded names and count complete
reporter pairs without a launcher record.
- Keep nested Vitest fixture runs from inheriting CI profiling and
creating false coverage gaps.
- Clarify ordinary CI access, large-trace display limits, and export
behavior in the operator guide.

## Verification

- [Full PR
suite](https://github.com/paperclipai/paperclip/actions/runs/38732093469/attempts/1):
48 of 48 jobs succeeded; 10m 29s wall time. The selected jobs used the
AWS public PR fleet. The protected exporter used a separate
GitHub-hosted runner.
- [Clean Honeycomb file
waterfall](https://ui.honeycomb.io/paperclip/environments/test/datasets/paperclip-ci/trace?trace_id=01ed0c541b0442e613a030ffb6dc8d9b&trace_start_ts=1792065955&trace_end_ts=1792066584):
48 jobs, 822 steps, 2,622 file spans, and `ci.profile_complete=true`. It
was reconstructed from that run's 45 timing artifacts after identifying
three nested fixture records. The full trace also recorded 44,497 tests;
Honeycomb's chart omits some deep test spans because it displays at most
32,000 spans per trace.
- The original exporter stopped after a partially accepted batch. A
local replay of that batch succeeded. I used the authorized local
test-environment key to complete the original upload and create the
file-level view. No key was added to this branch or PR.
- `node --test .github/scripts/tests/ci-profile.test.mjs
scripts/ci-profile/reporters.test.mjs`: 18 passed.
- `pnpm exec vitest run
server/src/__tests__/vitest-chat-shards.test.ts`: 1 passed.
- `git diff --check`: passed.
- The local `pnpm -r typecheck` and profiled fixture rerun could not
start: the package-manager shim could not verify the `pnpm@9.15.4`
registry signature because its fetches failed. `pnpm test:run` and `pnpm
build` were not run locally; hosted CI is pending.
- The updated exporter has not yet run from protected `master`; this PR
remains draft until CI and review finish.

## Risks

- A 48,000-span export now takes about three extra minutes due to
pacing. Retry limits still fail a persistently rejected batch and keep
the root unpublished.
- Honeycomb may retain duplicates from an already partial export. The
clean file-level evidence trace uses a separate trace ID.
- The API key stays only in the protected `ci-profiling` environment. PR
jobs write timing artifacts but never receive it.

> For core feature work, check [`ROADMAP.md`](ROADMAP.md) first and
discuss it in `#dev` before opening the PR. Feature PRs that overlap
with planned core work may need to be redirected — see
`CONTRIBUTING.md`.

## Model Used

OpenAI Codex, GPT-6 family, with reasoning, code execution, GitHub API,
and browser inspection. The runtime does not expose the exact serving
model ID or context window size.

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have searched GitHub for duplicate or related PRs and linked
them above
- [x] I have either (a) linked existing issues with `Fixes: #` /
`Closes: #` / `Refs: #` OR (b) described the issue in-PR following the
relevant issue template
- [x] I have not referenced internal/instance-local Paperclip issues or
links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip`
URLs)
- [x] My branch name describes the change (e.g. `docs/...`, `fix/...`)
and contains no internal Paperclip ticket id or instance-derived details
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [ ] All Paperclip CI gates are green
- [ ] Greptile is 5/5 with no open P2s, recommendations, or follow-ups
- [x] I will address all Greptile and reviewer comments before
requesting merge

---------

Co-authored-by: Paperclip <noreply@paperclip.ing>
2026-10-15 07:51:02 -05:00
DottaandPaperclip 6acec4266e feat(ci): profile full CODEOWNER PR suites in Honeycomb (#16378)
## Thinking Path

> - Paperclip is the open source app people use to manage AI agents for
work.
> - Its PR workflow runs dozens of parallel build and test jobs.
> - Individual job durations do not show the elapsed cost of the whole
suite.
> - Maintainers need one shared timeline to find slow work and repeated
setup.
> - This pull request adds full-suite profiles for selected CI CODEOWNER
PRs.
> - Honeycomb shows each job, step, test file, and supported test on
that timeline.
> - The benefit is evidence for changes that reduce total CI time.

## Linked Issues or Issue Description

**What existing behavior does this improve?**

The main PR workflow has about 48 jobs. Maintainers need to compare
their overlapping work and find which jobs delay completion.

**Current behavior**

GitHub shows job and step durations separately. Test files and tests are
not joined to a full workflow trace.

**Proposed behavior**

A CI CODEOWNER adds `profile-ci` to a PR. The tested code stays on that
PR branch. All main PR lanes run, including lanes normally skipped for
stack position or release notes. A trusted post-run exporter sends one
wall-clock trace to Honeycomb.

**Reason and benefit**

The trace supports decisions about which CI work to speed up or remove.
Ordinary PRs do not export traces. The roadmap and related-PR search
found no duplicate CI profiling work.

## What Changed

- Add label selection and a full-suite override. Verify the PR author,
original actor, and rerun actors against the trusted `.github/**`
CODEOWNERS rule.
- Record Vitest, Playwright, and Node test file/test timings in local
artifacts. Keep ordinary reporter behavior and failing exit codes.
- Add a trusted `workflow_run` exporter. Use actual GitHub timestamps
for all jobs, setup, steps, waiting, and teardown. Mark missing test
data and partial reruns.
- Keep the ingest key out of PR jobs. Store it only in the
`ci-profiling` environment, restricted to `master`. The exporter reads
bounded JSON and never executes artifact code.
- Record expected test invocations outside reporters so a missing
invocation cannot appear complete. Preserve `node --test` on older PR
checkouts. Flush large shard inventories before exit.
- Add security, timing, routing, and real-reporter checks. Document
operation and activation. Protect the exporter with CODEOWNERS.

## Verification

- 509 focused workflow/reporter/shard checks passed. They include
outside authors, outside rerun actors, bots, stale revisions, malicious
ZIP paths, incomplete reports, and partial ingestion failures.
- Final revision `3bf5d9017d` adds multi-file qualification and fixes
short-file step parenting and duplicate Node file-wrapper events.
Greptile reviewed this exact revision at 5/5 with no unresolved threads.
[Main PR CI
run](https://github.com/paperclipai/paperclip/actions/runs/38728040302):
the initial attempt had 54 successful checks, 3 intentional skips, and
one serialized-shard failure from an unchanged workspace-authorization
test exceeding its 15-second timeout. The single failed-shard retry
passed: the final result is 55 successful checks and 3 intentional
skips. The same timeout reproduces locally with profiling disabled; both
assertions pass with a diagnostic 60-second timeout override (about 23
seconds total). No source or CI timeout was changed.
- A dry run against real GitHub attempt 2 of run `38677445871` produced
exactly 3 executed jobs, 40 spans, and 510 seconds, excluding 45
carried-over jobs. The partial trace remains explicitly incomplete; this
validation did not upload data.
- `actionlint` passed for all four changed workflows. `git diff --check`
passed.
- Full Node 24 `pnpm -r typecheck` and `pnpm build` passed. The local
full `pnpm test:run` was stopped after it reported a setup-token timeout
and a distribution-plugin-catalog fixture failure. The 30 setup-token
tests passed on focused rerun. The plugin fixture fails at `rmSync` of a
directory symlink on this macOS/Node 24.11.0 host; the same failure
reproduces with the unchanged base Vitest configuration and unchanged
test/service files (10 other tests pass). The local full test suite is
therefore not claimed green.
- A real root-config Vitest probe passed 13 tests with profiling both
off and on. Multi-file Vitest, Playwright, and Node probes each verify
two distinct filename rows and four correctly parented tests, including
repeated test names across files. Separate passing probes exercise the
full exporter hierarchy `workflow → job → step → filename → tests`.
Intentional failing probes preserve failing exit status.
- Verified all 48 measured jobs in latest-head run `38728040302` used
AWS: one `paperclip-ci-routing-x64` gate and 47
`paperclip-public-pr-x64` jobs. Profiling preserves AWS authorization
and its GitHub-hosted fallback. The separate privileged exporter runs on
`ubuntu-latest` outside the measured suite.
- [Live Honeycomb
baseline](https://ui.honeycomb.io/paperclip/environments/test/datasets/paperclip-ci/trace/oaPMzw8zGwG):
48 jobs, 731 spans, 479 seconds. It matches [GitHub run
38671274294](https://github.com/paperclipai/paperclip/actions/runs/38671274294).
This historical trace has job/step data only; it is not proof of the
future label-triggered test-reporting journey.
- Verified the dedicated Honeycomb key is ingest-only with dataset
creation disabled. Verified the GitHub environment allows only the
`master` branch. No repository-level secret of that name exists. Both
credential values were scanned absent from source and branch history.

After merge, add `profile-ci` to a CI CODEOWNER PR, wait for the entire
PR run and exporter, then follow the run-summary link. Collapse job
children to compare parallel lanes; expand a job to inspect its steps
and tests.

## Risks

- Activation requires merging the trusted workflow definitions to
`master`. This PR continues using the current trusted reusable workflows
until then.
- Selected runs produce many spans and artifacts. Oversized artifacts
fail export instead of truncating data. Missing or cancelled reporters
are marked incomplete.
- GitHub timings have second precision. Node test times use reporter
receipt time. Rust retains job/step timing but lacks per-test wall
timestamps.
- CI CODEOWNERS are individual users in the explicit `.github/**` rule.
Unsupported team rules and identity lookup failures disable profiling.
- An interrupted upload can leave partial data. Retrying uses the same
span IDs, but the Events API does not promise deduplication.

## Model Used

OpenAI Codex, GPT-6 family, with reasoning, code execution, repository
tools, and browser verification. The runtime does not expose the exact
serving model ID or context-window size.

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have searched GitHub for duplicate or related PRs and linked
them above
- [x] I have either (a) linked existing issues with `Fixes: #` / `Closes
#` / `Refs #` OR (b) described the issue in-PR following the relevant
issue template
- [x] I have not referenced internal/instance-local Paperclip issues or
links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip`
URLs)
- [x] My branch name describes the change (e.g. `docs/...`, `fix/...`)
and contains no internal Paperclip ticket id or instance-derived details
- [ ] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [x] All Paperclip CI gates are green
- [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups
- [x] I will address all Greptile and reviewer comments before
requesting merge

---------

Co-authored-by: Paperclip <noreply@paperclip.ing>
2026-10-15 06:59:50 -05:00