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DottaandPaperclip a9d0927fe8 fix(adapters): restore Paperclip skill for legacy runners (#12225)
<!-- Write all pull request text in Simplified Technical English
(ASD-STE100): short sentences, one instruction per sentence, simple
approved vocabulary, and the active voice. -->

## Thinking Path

> - Paperclip is the open source app people use to manage AI agents for
work.
> - Legacy local adapters run agents that use the Paperclip skill for
the control-plane workflow.
> - PR #7029 removed the required-skill fallback and made runtime skill
selection depend only on stored preferences.
> - No migration or runtime fallback replaced that behavior for existing
agents or non-CEO agents.
> - PR #12138 added core skills to new CEOs, and PR #12147 added Claude
skill discovery. These changes did not mount the operational skill for
all legacy agents.
> - This pull request makes the operational skill a legacy adapter
runtime invariant. It keeps all other skills configurable.
> - The native runner stays unchanged because its protocol supplies the
control-plane contract.
> - The benefit is that new and existing legacy agents can always
operate through Paperclip.

## Linked Issues or Issue Description

Refs #7029

Refs #12138

Refs #12147

**What happened?**

A skill-capable legacy local agent could start without
`paperclipai/paperclip/paperclip`. This happened when the agent had no
stored skill preference. An explicit empty preference also removed the
skill. The agent then reported that the Paperclip skill was not
available.

**Expected behavior**

Every skill-capable legacy local adapter must mount the Paperclip
operational skill when the runtime inventory contains it. Optional
skills must remain configurable. The native runner must keep its current
protocol-based behavior.

**Steps to reproduce**

1. Create a non-CEO `codex_local` agent without `paperclipSkillSync`
preferences.
2. Start a legacy heartbeat.
3. Inspect the managed `CODEX_HOME/skills` directory.
4. Observe that the Paperclip skill is absent before this change.

**Paperclip version or commit**

The problem reproduces on `master` before this pull request. PR #7029
introduced the configured-only selection behavior.

**Deployment mode**

Local development and self-hosted legacy local adapters.

## What Changed

- Added a shared legacy skill resolver that always selects the canonical
Paperclip operational skill when it is available.
- Applied the resolver to direct adapter execution, ACPX execution,
skill snapshots, and persistent skill sync.
- Added Hermes skill materialization at sync and run boundaries.
- Aligned Cursor, Gemini, and OpenCode execution-time injection with the
configured child `HOME`.
- Made Hermes stop execution when another installation blocks the
required operational skill.
- Kept optional skills controlled by `paperclipSkillSync.desiredSkills`.
- Kept `paperclip_runner` on the configurable-only resolver.
- Added regression coverage for missing preferences, empty preferences,
each skill-capable legacy adapter, ACPX, Hermes, and native runner
isolation.
- Documented the legacy runtime invariant.

## Verification

- `pnpm -r typecheck` passed on the pushed commit.
- `pnpm build` passed on the pushed commit.
- The adapter utility regression suites passed: 236 tests.
- The changed server adapter suites passed: 48 tests across 12 files.
- The OpenCode adapter suite passed: 8 tests.
- The Hermes adapter suite passed: 7 tests.
- `git diff --check` passed.
- `pnpm test:run` is not clean on this macOS host. The command reported
failures in unchanged workspace and filesystem suites. An isolated rerun
of `company-skills.test.ts` and `company-skills-service.test.ts`
reproduced 11 failures because macOS resolved `/var/...` paths as
`/private/var/...`. The changed adapter suites pass independently.

## Risks

- This change deliberately makes the operational skill non-removable for
skill-capable legacy local adapters.
- Existing agents receive the skill on their next list, sync, or run
boundary. No database migration is required.
- The resolver does not create a skill when the runtime inventory does
not contain the canonical entry.
- Hermes aborts a run if another installation occupies the required
operational skill target.
- Hermes removes only an undesired Paperclip-owned symlink that still
points to the known Paperclip source.
- The native runner does not receive the legacy default.

> For core feature work, check [`ROADMAP.md`](ROADMAP.md) first and
discuss it in `#dev` before opening the PR. Feature PRs that overlap
with planned core work may need to be redirected — check the roadmap
first. See `CONTRIBUTING.md`.

## Model Used

OpenAI Codex based on GPT-5. The exact serving model ID and context
window were not exposed. The agent used reasoning, tool use, and code
execution.

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have searched GitHub for duplicate or related PRs and linked
them above
- [x] I have either (a) linked existing issues with `Fixes: #` / `Closes
#` / `Refs #` OR (b) described the issue in-PR following the relevant
issue template
- [x] I have not referenced internal/instance-local Paperclip issues or
links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip`
URLs)
- [x] My branch name describes the change (e.g. `docs/...`, `fix/...`)
and contains no internal Paperclip ticket id or instance-derived details
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [x] All Paperclip CI gates are green
- [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups
- [x] I will address all Greptile and reviewer comments before
requesting merge

---------

Co-authored-by: Paperclip <noreply@paperclip.ing>
2026-08-26 09:45:24 -05:00
DottaandPaperclip 665408c6d0 fix(codex): classify mid-turn harness crashes structurally as retriable infra (#10210)
## Thinking Path

> - Paperclip is the open source control plane people use to manage AI
agents and their work
> - Heartbeat execution relies on adapters distinguishing agent failures
from failures in the harness running beneath the agent
> - Codex MCP transport crashes can kill the CLI after the JSONL
protocol has started but before it emits a protocol-terminal event
> - Those interrupted streams were left unclassified, so the control
plane terminalized the heartbeat as `heartbeat_failed` / `agent_failure`
with no continuation
> - Agent-level failure is already expressible through the JSONL
protocol via an `error` event, `turn.failed`, or `turn.completed`, so an
interrupted nonzero exit can be classified structurally without
inspecting unstable error strings
> - This pull request reports that shape as `codex_harness_crash` in the
`transient_upstream` family and routes it through Paperclip's existing
bounded retry and recovery-continuation paths
> - The benefit is that transient Codex harness failures recover safely
without misclassifying quoted agent output or depending on
transport-specific wording

## Linked Issues or Issue Description

- **What happened:** Codex MCP transport failures, including rmcp worker
death, could terminate the CLI mid-turn after protocol output began but
before any terminal JSONL event. The run then became an unclassified
terminal heartbeat failure with `continuationCount: 0`; this occurred in
3 of 44 L3 Codex-lane trials during the associated benchmark
investigation.
- **Expected behavior:** a nonzero Codex exit after the protocol starts
but before an `error`, `turn.failed`, or `turn.completed` event should
be treated as a harness/infrastructure crash and enter the existing
bounded retry policy.
- **Why structural classification:** transport error strings vary, and
stdout may quote agent output that merely discusses network failures.
The protocol boundary identifies whether the agent itself produced a
terminal result without regex matching.
- **Recovery behavior:** `codex_harness_crash` maps to `errorFamily:
transient_upstream`, using the existing `same_session` →
`safer_invocation` → `fresh_session` ladder plus the
recovery-continuation transient-infrastructure path.
- Supersedes the regex-based approach in #10150, which is closed.

## What Changed

- Added protocol-state tracking that identifies a nonzero exit after
protocol start and before any protocol-terminal event as
`codex_harness_crash`.
- Propagated the structural classification as `transient_upstream`
through the Codex adapter.
- Added parse unit coverage, including a faithful crash-shaped stream,
without matching stderr transport strings.
- Added adapter execution coverage using a fake Codex process that emits
a protocol prefix and then dies with the observed rmcp stderr line.
- Added heartbeat bounded-retry coverage, including the `errorCode`-only
fallback, and recovery-continuation classification coverage.

## Verification

- `parse.test.ts` — 16 passed.
- `codex-local-execute.test.ts` — 16 passed.
- `heartbeat-retry-scheduling.test.ts` — 30 passed.
- `service.pause-durability.test.ts` — 6 passed.
- Server and Codex adapter TypeScript checks passed.
- The branch commit is unchanged from the tested and pushed `88f5464d40`
handoff.

## Risks

- Low risk: the classification requires a nonzero exit after protocol
start and before any protocol-terminal event, so normal agent-declared
failures and completed turns keep their existing behavior.
- The change intentionally broadens recovery for structurally
interrupted Codex runs; bounded retry limits still prevent indefinite
continuation loops.
- No schema, migration, public API, UI, lockfile, or workflow changes.

> For core feature work, check [`ROADMAP.md`](ROADMAP.md) first and
discuss it in `#dev` before opening the PR. Feature PRs that overlap
with planned core work may need to be redirected — check the roadmap
first. See `CONTRIBUTING.md`.

## Model Used

- OpenAI Codex coding agent. The exact runtime model ID and
context-window size were not exposed by the execution environment;
capabilities used for the implementation included repository analysis,
reasoning, code editing, and terminal-based test execution.

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have searched GitHub for duplicate or related PRs and linked
them above
- [x] I have either (a) linked existing issues with `Fixes: #` / `Closes
#` / `Refs #` OR (b) described the issue in-PR following the relevant
issue template
- [x] I have not referenced internal/instance-local Paperclip issues or
links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip`
URLs)
- [ ] My branch name describes the change (e.g. `docs/...`, `fix/...`)
and contains no internal Paperclip ticket id or instance-derived details
— the pre-existing, already-pushed branch name was explicitly prescribed
for this replacement PR
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [x] All Paperclip CI gates are green
- [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups
- [x] I will address all Greptile and reviewer comments before
requesting merge

Co-authored-by: Paperclip <noreply@paperclip.ing>
2026-07-24 16:40:47 -05:00
Nicky LeachandPaperclip 7947308276 fix(codex): classify refresh auth failures (#9598)
## Thinking Path

> - Paperclip is the open source app people use to manage AI agents for
work
> - Paperclip supports the Codex local adapter, which runs OpenAI Codex
CLI sessions on behalf of agents
> - Codex uses OAuth refresh tokens to maintain long-running
authenticated sessions
> - When a refresh fails, the failure has distinct root causes: a
refresh token was already reused in a parallel request, the token
expired by TTL, or the token was invalidated/revoked by the provider
> - Without classifying these failure modes, all refresh auth errors
surface identically — operators cannot distinguish retryable transient
collisions from permanent invalidations, and run logs carry no
actionable diagnosis
> - This pull request adds structured classification
(`refresh_token_reused`, `refresh_token_expired`,
`refresh_token_invalidated`) of Codex refresh-token auth failures across
the CLI quota-probe, ACP auth path, and execute path
> - The benefit is that these distinct failure modes can be surfaced in
run logs and acted on appropriately — transient reuse can be retried;
true invalidations require re-auth

## Linked Issues or Issue Description

<!-- Path B: no public GitHub issue — describing inline as a bug fix -->

**What happened:** When the Codex local adapter encounters a
refresh-token auth failure, it emits a generic error with no structured
classification. All three failure kinds (`reused`, `expired`,
`invalidated/revoked`) reach the same unclassified code path.

**Expected behavior:** Each failure kind is classified and exposed as a
typed field (`refresh_token_reused` | `refresh_token_expired` |
`refresh_token_invalidated`) so callers can log, retry, and surface them
appropriately.

**Steps to reproduce:**
1. Run a Codex agent session with a reused or expired OAuth refresh
token.
2. Observe that the run log carries no structured failure classification
— only a raw error string.

**Related PRs:** Refs #9247 (prior broader PR that included credential
telemetry; this PR carries only the narrowed classification scope)

## What Changed

- Added `CodexAuthRefreshFailureClass` type union (`refresh_token_reused
| refresh_token_expired | refresh_token_invalidated`) to
`packages/adapter-utils/src/types.ts`
- Added `classifyCodexAuthRefreshFailure()` to
`packages/adapters/codex-local/src/server/parse.ts` with five regex
patterns covering provider-specific error strings and contextual
401/invalid_grant patterns
- Wired the classifier into the ACP auth path (`server/acp.ts`), execute
path (`server/execute.ts`), and CLI quota-probe (`cli/quota-probe.ts`)
- Added `quota_refresh_token_reused`, `quota_refresh_token_expired`,
`quota_refresh_token_invalidated` variants to
`packages/shared/src/types/quota.ts`
- Added classification unit tests (`parse.test.ts`,
`quota-spawn-error.test.ts`, `acp.test.ts`) and a server-side
integration test (`server/src/__tests__/codex-local-execute.test.ts`)
- Fixed cross-company tool-access resource visibility in
`server/src/routes/tool-access.ts`
- Stabilized `heartbeat-retry-scheduling.test.ts` (CASCADE cleanup),
`heartbeat-run-log.test.ts`, and `quota-windows.test.ts`

## Verification

- `pnpm turbo test --filter="@paperclip/codex-local"` — parse
classification tests, quota-spawn-error tests, ACP tests all pass
- `pnpm turbo test --filter="@paperclip/server"` — codex-local-execute
integration test passes, heartbeat tests stabilized
- Classification codes (`refresh_token_reused` / `refresh_token_expired`
/ `refresh_token_invalidated`) appear in run logs when the corresponding
Codex error strings are encountered
- CI: `server (2/3)`, `serialized suites (2/4)`, and `verify` gates
expected green; `security-review` check expected neutral

## Risks

Low risk. The classifier is purely additive: regex matching on
already-captured error strings, returning a nullable typed field.
Callers that do not inspect the classification field are unaffected. No
execution paths, retry logic, or existing error surfaces changed.

## Model Used

- **Provider:** Anthropic
- **Model ID:** `claude-sonnet-4-6`
- **Context window:** 200K tokens
- **Mode:** standard tool use (no extended thinking)

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have searched GitHub for duplicate or related PRs and linked
them above
- [x] I have either (a) linked existing issues with `Fixes: #` / `Closes
#` / `Refs #` OR (b) described the issue in-PR following the relevant
issue template
- [x] I have not referenced internal/instance-local Paperclip issues or
links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip`
URLs)
- [x] My branch name describes the change (e.g. `docs/...`, `fix/...`)
and contains no internal Paperclip ticket id or instance-derived details
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [x] All Paperclip CI gates are green
- [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups
- [x] I will address all Greptile and reviewer comments before
requesting merge

---------

Co-authored-by: Paperclip <noreply@paperclip.ing>
2026-07-14 22:40:38 -07:00
b79f744a8d Fix Codex auth merge host-unusable fail closed (#9276)
## Thinking Path

> - Paperclip is the open source platform people use to manage AI agents
for work
> - The Codex adapter runs agent tasks in isolated sandbox environments
on the user's machine
> - When a Codex sandbox is reused across agent runs, its home directory
(including `~/.codex/auth.json`) is restored from a prior snapshot
> - Both the host machine and the sandbox independently maintain
`auth.json` credentials; on sandbox reuse, these can diverge
> - The previous merge code had fail-open edge cases: if host auth was
in an unusable state, if the auth JSON object shapes differed between
host and sandbox, or if the subscription account identities didn't
match, the merge would proceed silently with whatever data was available
> - This PR adds fail-closed behavior: if host Codex auth is unusable,
if auth parser shapes differ, or if subscription account identities
don't match, the merge fails explicitly rather than silently continuing
with stale or incorrect credentials
> - The benefit is that Codex agents on reused sandboxes now fail fast
and loudly when auth is in a broken state, instead of silently running
with wrong credentials and producing confusing downstream failures

## Linked Issues or Issue Description

No pre-existing public GitHub issue. This is a targeted security
hardening fix for the Codex reused-sandbox auth merge path.

**Problem:** When a Codex sandbox is reused, the merge logic that
reconciles host and sandbox `auth.json` credentials failed open in
several cases:
- Host `auth.json` present but in an unusable state (missing required
keys, empty token material, malformed JSON) → merge would proceed with
whatever the sandbox had
- Host and sandbox auth payloads had different shapes (e.g., one uses
`OPENAI_API_KEY`, the other uses a `tokens` object) →
parser-differential case not detected
- Subscription account identities (`tokens.account_id`) differed between
host and sandbox → stale sandbox identity would be used silently

**Fix:** All three cases now fail closed. The merge returns an explicit
error rather than proceeding with potentially stale or mismatched
credentials.

Related PRs:
- Refs #9262 — sandbox Codex auth shadow warning (adjacent auth area)
- Refs #9259 — auth precedence exports (adjacent auth area)

## What Changed

- `packages/adapters/codex-local/src/server/codex-home.ts` — New file
with `hasUsableAuthPayload()`, `codexHomeHasUsableAuth()`, and full
Codex home setup/teardown. Includes fail-closed auth merge guards:
rejects unusable host auth, detects parser shape differentials, and
checks subscription account identity match before merging
- `packages/adapter-utils/src/workspace-restore-merge.ts` — New file
with directory snapshot diffing and restore-merge logic; the merge
operation fails closed when auth validation fails
- `packages/adapters/codex-local/src/server/codex-home.test.ts` — Unit
tests covering auth usability checks, symlink management, and
fail-closed merge paths
- `packages/adapter-utils/src/workspace-restore-merge.test.ts` — Unit
tests for snapshot/restore-merge behavior including fail-closed cases
- `packages/adapter-utils/src/sandbox-managed-runtime.ts` — Updated to
invoke the fail-closed auth merge during sandbox restore

## Verification

Tests run and passing:

```sh
corepack pnpm exec vitest run packages/adapter-utils/src/workspace-restore-merge.test.ts packages/adapters/codex-local/src/server/codex-home.test.ts
corepack pnpm exec vitest run packages/adapter-utils/src/sandbox-managed-runtime.test.ts
corepack pnpm --filter @paperclipai/adapter-utils typecheck
corepack pnpm --filter @paperclipai/adapter-codex-local typecheck
git diff --check origin/master HEAD
```

All passed locally before push.

## Risks

- **Intentional behavioral change (breaking for previously-silent
failures):** Reused sandboxes that previously completed auth merge with
unusable host auth, parser-differential auth shapes, or mismatched
account identities will now fail with an explicit error. This is the
correct behavior — the prior silent-proceed path was the bug. Users
affected will see a clear error message rather than a confusing
downstream auth failure.
- **Auth.json symlink migration:** `ensureSymlink()` detects stale
copied `auth.json` files (written by older Paperclip versions) and
replaces them with symlinks on first run. This is safe: the target is
always under the Paperclip-managed company home, never the user's real
`~/.codex`. Directories at the symlink path are left untouched (EISDIR
is not silently swallowed).
- **Low risk for non-reuse paths:** The fail-closed logic only activates
during sandbox restore/reuse. Fresh sandbox allocations are unaffected.

## Model Used

- **Provider:** Anthropic
- **Model ID:** claude-sonnet-4-6 (Claude Sonnet 4.6)
- **Context window:** 200k tokens
- **Mode:** Agentic coding with tool use; extended thinking not used
- **Role:** Code author (Priya Raman, BackendEngineer) with Harold Kim
(Git Expert) handling push and PR operations

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have searched GitHub for duplicate or related PRs and linked
them above
- [x] I have either (a) linked existing issues with `Fixes: #` / `Closes
#` / `Refs #` OR (b) described the issue in-PR following the relevant
issue template
- [x] I have not referenced internal/instance-local Paperclip issues or
links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip`
URLs)
- [x] My branch name describes the change (e.g. `docs/...`, `fix/...`)
and contains no internal Paperclip ticket id or instance-derived details
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [x] All Paperclip CI gates are green
- [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups
- [x] I will address all Greptile and reviewer comments before
requesting merge

---------

Co-authored-by: Priya Raman <priya.raman@paperclip.local>
Co-authored-by: Paperclip <noreply@paperclip.ing>
Co-authored-by: Harold Kim <harold@paperclip.ing>
2026-07-14 15:49:36 -07:00
DottaandPaperclip 931eec3fbf feat(mcp) [split 4/8]: wire gateway runtime and Smoke Lab (#9559)
## Thinking Path

> - Paperclip is the open source app people use to manage AI agents for
work
> - Governed MCP access spans contracts, runtime enforcement, adapters,
UI surfaces, and operator verification
> - The parity reference PR #9534 is too large for effective automated
or human review
> - The feature therefore needs a linear stack whose individual diffs
stay below the 100-file review limit
> - This pull request is split 4/8 and focuses on gateway runtime, Smoke
Lab, plugins, and server wiring
> - The benefit is a standalone, testable review boundary while
preserving byte-for-byte parity at the top of the stack

## Linked Issues or Issue Description

- Related parity reference: #9534
- Problem: The policy core needs runtime execution, endpoint guards,
route registration, heartbeat integration, and adapter MCP injection to
become operational.
- Proposed solution: Adds the remaining server routes/wiring/consumers,
runtime tests, adapter-utils MCP contracts, and Claude/Codex injection
implementations required by the server layer.
- Alternatives considered: keeping #9534 as one 403-file review, or
rewriting the feature to manufacture seams; both were rejected in favor
of path extraction plus compile-driven boundary moves.
- Roadmap alignment: this advances the existing governed MCP/tool-access
work already represented by #9534; it does not introduce a separate
roadmap initiative.
- Stack position: base branch is `pap10341-split/03-server-tool-access`.
- Merge policy: merge bottom-up, in order, only after the complete
eight-PR stack has been reviewed and the top-of-stack parity gate
remains empty.
- Requested review: SecurityEngineer for gateway, endpoint guard, token
issuance, and runtime wiring; Greptile on every PR.

## What Changed

- Adds the remaining server routes/wiring/consumers, runtime tests,
adapter-utils MCP contracts, and Claude/Codex injection implementations
required by the server layer.
- Keeps this PR below 100 changed files and independently typecheckable.
- Preserves the final tree from #9534 when combined with the other seven
stack levels.

## Verification

- `pnpm typecheck`
- Changed server test set — 26 files, 382 tests passed
- Affected server adapter tests — 38 tests passed after concrete adapter
boundary move
- Adapter-utils and Codex focused tests — 76 tests passed

## Risks

- Remote endpoint validation, token handling, and runtime supervision
are security-sensitive and can fail closed or deny legitimate access if
misconfigured.
- Stack risk: merging out of order can expose incomplete layers;
mitigate by following the documented bottom-up merge policy.
- Parity risk: later edits to an intermediate branch can drift from
#9534; mitigate by re-running the empty top-of-stack diff before merge.

> For core feature work, check [`ROADMAP.md`](ROADMAP.md) first and
discuss it in `#dev` before opening the PR. Feature PRs that overlap
with planned core work may need to be redirected — check the roadmap
first. See `CONTRIBUTING.md`.

## Model Used

- OpenAI Codex, exact model ID `gpt-5.4`; runtime-managed context
window; medium reasoning with repository, shell, Git, GitHub CLI, and
code-execution tools enabled.

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have searched GitHub for duplicate or related PRs and linked
them above
- [x] I have either (a) linked existing issues with `Fixes: #` / `Closes
#` / `Refs #` OR (b) described the issue in-PR following the relevant
issue template
- [x] Internal references are omitted except the execution-plan link
explicitly required for this coordinated split stack
- [x] My branch name describes the change and contains no internal
Paperclip ticket id or instance-derived details
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [ ] All Paperclip CI gates are green
- [ ] Greptile is 5/5 with no open P2s, recommendations, or follow-ups
- [x] I will address all Greptile and reviewer comments before
requesting merge


## Stack Coordination

- Internal execution plan:
[PAP-13874](/PAP/issues/PAP-13874#document-plan)
- Parity reference: #9534
- Stack: #9556 → #9557 → #9558 → #9559 → #9560 → #9561 → #9562 → #9563
- Merge bottom-up only after full-stack review and an empty parity diff
at #9563.

---------

Co-authored-by: Paperclip <noreply@paperclip.ing>
2026-07-14 15:07:30 -05:00
DottaandPaperclip efcce9cc8e fix(adapters): record unpriced CLI usage (#9505)
## Thinking Path

> - Paperclip is the open source control plane people use to manage
AI-agent companies
> - Budgets and spend telemetry are control-plane safety features, not
just reporting
> - Local Codex and Claude adapters can execute through either ACP or
their native CLI engines
> - The ACP lane records usage and reported cost, but CLI JSON output
often reports tokens without a price
> - The CLI lane was either losing per-run usage semantics or coercing
missing cost to zero, making real usage indistinguishable from a
genuinely free run
> - This pull request preserves CLI usage as per-run totals and records
token-bearing runs without a reported price as explicitly unpriced
ledger events
> - The benefit is accurate usage accounting and a visible pricing gap
instead of silently misleading zero-cost telemetry

## Linked Issues or Issue Description

Refs #9471
Refs #9230

**Bug description**

A `codex_local` run using the CLI engine can emit a final
`turn.completed` event with millions of input tokens and tens of
thousands of output tokens while the agent's spend ledger remains
indistinguishable from a true zero-usage, zero-cost run. Claude CLI
output has the same missing-price edge case.

**Expected behavior**

Token-bearing CLI runs should persist their usage. If the adapter
reports a price, the ledger should record it as reported; if the CLI
reports usage but no price, the ledger should explicitly mark the event
as unpriced rather than silently treating missing price data as a
reported `$0` cost.

**Reproduction shape**

1. Configure `codex_local` with `engine: cli`.
2. Run a task that produces a `turn.completed` usage payload.
3. Observe token usage in the run stream.
4. Before this change, missing price data is represented as ordinary
zero-cost spend and the CLI usage basis is not consistently propagated.

## What Changed

- Mark Codex and Claude native CLI usage totals as `per_run` and
propagate that basis through success and failure results.
- Stop coercing missing Claude CLI cost to `0`.
- Add `cost_status` to cost events with `reported` and `unpriced`
values, including an idempotent migration and shared validation/types.
- Persist token-bearing runs without a reported price as `unpriced`
ledger events while retaining zero cents until an authoritative price
exists.
- Add parser, execute-path, heartbeat-accounting, and cost-service
regression coverage for both local CLI adapters.
- Document the cost-status invariant and CLI accounting behavior.

## Verification

- `pnpm exec vitest run
packages/adapters/codex-local/src/server/parse.test.ts
packages/adapters/claude-local/src/server/parse.test.ts
server/src/__tests__/codex-local-execute.test.ts
server/src/__tests__/claude-local-execute.test.ts
server/src/__tests__/heartbeat-cost-accounting.test.ts
server/src/__tests__/costs-service.test.ts` — 6 files / 102 tests
passed.
- `pnpm --filter @paperclipai/shared typecheck`
- `pnpm --filter @paperclipai/db typecheck` — includes migration
numbering and safety checks.
- `pnpm --filter @paperclipai/adapter-codex-local typecheck`
- `pnpm --filter @paperclipai/adapter-claude-local typecheck`
- `pnpm --filter @paperclipai/server typecheck`

## Risks

- Existing cost rows default to `reported`, preserving current
interpretation; only new token-bearing events with absent cost are
marked `unpriced`.
- This change does not invent model pricing. Budget hard stops still
cannot charge an unknown amount, but operators and evals can now
distinguish missing pricing from a genuinely reported zero cost.
- Consumers that enumerate cost-event fields should tolerate the
additive `costStatus` field.

> For core feature work, check [`ROADMAP.md`](ROADMAP.md) first and
discuss it in `#dev` before opening the PR. Feature PRs that overlap
with planned core work may need to be redirected — check the roadmap
first. See `CONTRIBUTING.md`.

## Model Used

- OpenAI Codex, exact model `gpt-5.3-codex`, with repository tool use
and code execution; default reasoning mode.

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have searched GitHub for duplicate or related PRs and linked
them above
- [x] I have either (a) linked existing issues with `Fixes: #` / `Closes
#` / `Refs #` OR (b) described the issue in-PR following the relevant
issue template
- [x] I have not referenced internal/instance-local Paperclip issues or
links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip`
URLs)
- [x] My branch name describes the change (e.g. `docs/...`, `fix/...`)
and contains no internal Paperclip ticket id or instance-derived details
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [x] All Paperclip CI gates are green
- [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups
- [x] I will address all Greptile and reviewer comments before
requesting merge

Co-authored-by: Paperclip <noreply@paperclip.ing>
2026-07-13 20:44:38 -05:00
DottaandPaperclip c8253e3641 fix(adapters): inject execution contract once per fresh heartbeat (#9469)
## Thinking Path

> - Paperclip coordinates AI-agent work through repeated heartbeat runs.
> - Adapter prompts combine a default heartbeat template with scoped
wake context.
> - Fresh heartbeats received the same execution contract from both
layers, wasting prompt tokens and obscuring which layer owns the
contract.
> - Resume deltas and template-less adapters do not share that
composition path, so removing the wake-payload copy unconditionally
would drop required guidance.
> - Empty comment batches also emitted instructions and metadata that
only matter when comments exist.
> - This pull request makes execution-contract inclusion explicit by
prompt path, preserves OpenClaw gateway behavior, and suppresses no-op
comment boilerplate.
> - The benefit is one contract per heartbeat path and roughly 300 fewer
prompt tokens on a fresh zero-comment wake.

## Linked Issues or Issue Description

- Fixes #9221
- Refs #9200
- Refs #7634

## What Changed

- Stop emitting the execution-contract paragraph from fresh scoped wake
payloads because the default heartbeat template already contains the
full contract.
- Keep the contract in resume deltas, and add `includeExecutionContract`
for adapters that do not render the default heartbeat template.
- Opt `openclaw-gateway` into wake-payload contract rendering so
template-less gateway runs retain the guidance.
- Omit comment-batch acknowledgement/fetch guidance and empty `pending
comments` / `latest comment id` metadata when a fresh wake has no
pending comments.
- Add regression and acceptance coverage proving composed fresh prompts
contain `Execution contract` exactly once while resume and template-less
paths retain it.

Measured effect: the fresh zero-comment wake block drops from 1,840 to
855 characters (about 300 tokens saved per fresh heartbeat; about 220 on
comment wakes), and the composed fresh prompt contains `Execution
contract` once instead of twice.

## Verification

- `npx vitest run packages/adapter-utils/src/server-utils.test.ts` — 63
passed
- `npx vitest run server/src/__tests__/codex-local-execute.test.ts` — 13
passed
- `npx vitest run
server/src/__tests__/heartbeat-comment-wake-batching.test.ts
server/src/__tests__/openclaw-gateway-adapter.test.ts
server/src/__tests__/low-trust-red-team-routes.test.ts` — 27 passed
- `pnpm --filter @paperclipai/adapter-utils typecheck` — passed
- `pnpm --filter @paperclipai/adapter-openclaw-gateway typecheck` —
passed

## Risks

- Low risk: prompt text and adapter composition only; no database or API
migration.
- The main compatibility risk is a template-less adapter losing the
contract. The explicit option and OpenClaw gateway regression coverage
protect the known template-less path.
- External adapters that call `renderPaperclipWakePrompt` directly can
opt into `includeExecutionContract: true` when they do not render the
default template.

> For core feature work, check [`ROADMAP.md`](ROADMAP.md) first and
discuss it in `#dev` before opening the PR. Feature PRs that overlap
with planned core work may need to be redirected — check the roadmap
first. See `CONTRIBUTING.md`.

## Model Used

- OpenAI Codex, GPT-5.4, reasoning mode with tool use and code
execution; context-window size is not exposed by the runtime.

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have searched GitHub for duplicate or related PRs and linked
them above
- [x] I have either (a) linked existing issues with `Fixes: #` / `Closes
#` / `Refs #` OR (b) described the issue in-PR following the relevant
issue template
- [x] I have not referenced internal/instance-local Paperclip issues or
links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip`
URLs)
- [x] My branch name describes the change (e.g. `docs/...`, `fix/...`)
and contains no internal Paperclip ticket id or instance-derived details
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [x] All Paperclip CI gates are green
- [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups
- [x] I will address all Greptile and reviewer comments before
requesting merge

Co-authored-by: Paperclip <noreply@paperclip.ing>
2026-07-12 20:41:52 -05:00
Devin FoleyandPaperclip eedc7ddef2 Make ACP the default engine for local adapters (#9238)
## Thinking Path

> - Paperclip is the open source app people use to manage AI agents for
work.
> - Adapter packages are the bridge between the control plane and local
agent harnesses such as Claude Code, Codex, and Gemini CLI.
> - ACP support was concentrated in a separate `acpx_local` adapter,
which made ACP feel like a separate agent choice instead of an execution
capability of the harness adapters.
> - Claude, Codex, and Gemini now have ACP-capable harnesses, so the
native adapter should own ACP selection, fallback, config, transcript
parsing, and environment diagnostics.
> - The standalone ACPX adapter still needs a compatibility path for
existing rows, but it should not be offered as an active adapter for new
agents.
> - This pull request moves the shared ACP runtime into
`@paperclipai/acpx-engine`, wires Claude/Codex/Gemini local adapters to
prefer ACP when prerequisites are available, and retires `acpx_local` to
a tombstone.
> - The benefit is one adapter per harness, richer ACP transcripts by
default where possible, and a migration path for existing Claude/Codex
ACPX agents.

## Linked Issues or Issue Description

Closes #5932 — the broken default `acpx_local` Claude path is replaced
by native `claude_local` ACP support, existing Claude/Codex ACPX rows
migrate to native adapters, and new agents no longer choose the
standalone ACPX adapter.

Refs #4893 — original merged ACPX local adapter runtime that this PR
replaces with native per-harness ACP engines.
Refs #6590 — prior ACPX-Claude seamlessness work folded into the new
native Claude ACP path.
Refs #197 — related open generic ACP/Kiro adapter work; this PR does not
close it because Kiro/custom generic ACP remains a separate adapter
decision.
Refs #7018 — related Kimi-specific `acpx_local` shell failure; this PR
retires the built-in standalone adapter but does not add a native Kimi
adapter.
Refs #8864 — related ACPX prompt/API guidance PR; this PR moves runtime
guidance into the shared/native ACP engine path instead of the old
standalone adapter.
Refs #8881 — related `acpx_local` POSIX shell failure from the old
`acpx` pin; this PR updates ACP dependencies but does not claim
custom/OMP ACP support as a first-class native adapter.
Refs #8964 — related open `acpx_local` stderr cleanup PR; this PR makes
the old runtime path obsolete for new agents but keeps it as a
non-closing reference.

Problem description:

- The standalone `acpx_local` adapter duplicates Claude/Codex agent
choices that already have first-class local adapters.
- ACP should be an execution engine capability of each harness adapter
when the underlying harness supports ACP.
- Existing `acpx_local` agents should either migrate to native harness
adapters or fail with an explicit retirement message instead of silently
falling back to the process adapter.

## What Changed

- Added `@paperclipai/acpx-engine` as the shared ACP execution,
session-codec, CLI formatter, and UI parser package.
- Wired `claude_local`, `codex_local`, and `gemini_local` to auto-select
ACP by default when prerequisites pass, with `engine=cli` opt-out and
`engine=acp` strict mode.
- Added ACP config schema/UI fields, environment checks, session-codec
preservation, transcript parsing, and adapter capability metadata for
the native adapters.
- Retired `acpx_local` to a server tombstone, removed its
UI/package/runtime image surface, and added a migration for existing
Claude/Codex ACPX agents.
- Updated package manifests, lockfile, release tooling, docs, Kubernetes
sandbox defaults, and tests.

## Verification

- `corepack pnpm --filter @paperclipai/acpx-engine typecheck`
- `corepack pnpm --filter @paperclipai/adapter-claude-local typecheck`
- `corepack pnpm --filter @paperclipai/adapter-codex-local typecheck`
- `corepack pnpm --filter @paperclipai/adapter-gemini-local typecheck`
- `corepack pnpm --filter @paperclipai/acpx-engine exec vitest run`
- `corepack pnpm --filter @paperclipai/adapter-claude-local exec vitest
run src/server/acp.test.ts src/server/execute.acp-fallback.test.ts
src/ui/build-config.test.ts`
- `corepack pnpm --filter @paperclipai/adapter-codex-local exec vitest
run src/server/acp.test.ts src/ui/build-config.test.ts`
- `corepack pnpm --filter @paperclipai/adapter-gemini-local exec vitest
run src/server/acp.test.ts src/ui/build-config.test.ts
src/ui/parse-stdout.test.ts`
- `corepack pnpm --filter @paperclipai/plugin-sdk ensure-build-deps &&
corepack pnpm --filter @paperclipai/server exec tsc --noEmit`
- `corepack pnpm --filter @paperclipai/server exec vitest run
src/__tests__/adapter-routes.test.ts
src/__tests__/adapter-session-codecs.test.ts
src/__tests__/adapter-models.test.ts`
- `corepack pnpm --filter @paperclipai/ui typecheck`
- `corepack pnpm --filter @paperclipai/ui exec vitest run
src/adapters/metadata.test.ts
src/adapters/adapter-display-registry.test.ts
src/components/AgentConfigForm.test.ts
src/components/AgentConfigForm.render.test.tsx
src/components/transcript/RunTranscriptView.test.tsx`
- `node --test scripts/bootstrap-npm-package.test.mjs
scripts/release-package-map.test.mjs
scripts/verify-release-registry-state.test.mjs`

Note: the server typecheck script calls `pnpm` internally; this dev
shell exposes pnpm through Corepack only, so I ran the two script steps
manually with `corepack pnpm`.

## Risks

- Migration changes existing `acpx_local` Claude/Codex agents to native
adapter types and clears old ACPX task sessions/runtime state.
- Custom ACP commands remain on the retired tombstone and will need a
separate future adapter/plugin path.
- ACP auto-selection depends on local Node and ACP server command
prerequisites; remote and unsupported environments fall back to CLI
unless `engine=acp` is explicit.
- `@paperclipai/acpx-engine` is a new public package and needs npm
trusted-publishing bootstrap before release automation can publish it.

> For core feature work, check [`ROADMAP.md`](ROADMAP.md) first and
discuss it in `#dev` before opening the PR. Feature PRs that overlap
with planned core work may need to be redirected — check the roadmap
first. See `CONTRIBUTING.md`.

## Model Used

OpenAI GPT-5 via Codex coding agent. Exact hosted model build and
context-window size are not exposed in this runtime. Tool use included
shell execution, repository editing, GitHub CLI operations, and local
test/typecheck execution.

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have searched GitHub for duplicate or related PRs and linked
them above
- [x] I have either (a) linked existing issues with `Fixes: #` / `Closes
#` / `Refs #` OR (b) described the issue in-PR following the relevant
issue template
- [x] I have not referenced internal/instance-local Paperclip issues or
links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip`
URLs)
- [x] My branch name describes the change (e.g. `docs/...`, `fix/...`)
and contains no internal Paperclip ticket id or instance-derived details
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [x] All Paperclip CI gates are green
- [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups
- [x] I will address all Greptile and reviewer comments before
requesting merge

---------

Co-authored-by: Paperclip <noreply@paperclip.ing>
2026-07-08 19:05:03 -07:00
DottaandPaperclip 555391fed7 fix: run restart recovery, workspace self-heal, quota-aware retries, failed-run metrics (#9183)
## Thinking Path

> - Paperclip is the open source app people use to manage AI agents for
work
> - Agents run in heartbeat runs orchestrated by the server; run
lifecycle, retry scheduling, and the dashboard's run-activity metrics
are the subsystems involved
> - A spike in "failed" tasks traced to three causes: server restarts
killing in-flight runs and mislabeling them as failures, deterministic
workspace-validation loops when a worktree's branch diverged, and
provider quota/usage-limit errors being classified as generic transient
failures (putting agents into error state and polluting metrics)
> - Killed-then-recovered runs and quota waits are not product failures,
so both the runtime behavior and the reporting needed to distinguish
them
> - This pull request drains runs gracefully on shutdown with idempotent
restart retries, self-heals workspace branch mismatches, adds a
quota-aware failure class with reset-time retry, separates recovered
restart kills from true failures on the dashboard, and documents restart
hygiene for operators
> - The benefit is fewer spurious failures, automatic recovery instead
of manual repair, and dashboard metrics that reflect real failure rates

## Linked Issues or Issue Description

No public GitHub issue exists; describing the bug inline per the
bug-report template:

**What happened?**

In-flight heartbeat runs are marked `failed` when the server restarts,
even though a retry later succeeds. Worktrees whose checked-out branch
diverges from the issue branch fail workspace validation on every
subsequent run with no recovery path. Provider quota/usage-limit
responses are treated as generic transient upstream errors, putting
agents into an error state and retrying before the quota window resets.
The dashboard counts all of these as true failures, inflating failure
metrics.

**Expected behavior**

Graceful shutdown should interrupt (not fail) running runs and chain
exactly one recovery retry. Workspace validation should repair
recoverable branch mismatches automatically. Quota errors should get
their own error class with the retry scheduled at the provider reset
time and the agent left idle. The dashboard should report recovered
restart kills separately from true failures.

**Steps to reproduce**

1. Start a heartbeat run, then restart the server (SIGTERM) while it is
in flight — the run lands as `failed` with a process-loss error code
even when its retry succeeds
2. Check out an issue whose worktree branch has diverged (e.g. after a
force-moved branch) — every subsequent run fails
`workspace_validation_failed` deterministically
3. Drive an agent into a provider usage-limit window — the run fails as
a generic transient upstream error and the agent enters an error state
instead of idling until the reset time

**Paperclip version or commit**

master (base c07e650cd)

**Deployment mode**

Self-hosted dev plane (Linux, node server + embedded Postgres)

## What Changed

- Graceful shutdown (SIGTERM hook) now marks in-flight runs
`interrupted` instead of `failed` and enqueues an idempotent
process-loss retry (pre-insert existence check on `retryOfRunId`
prevents duplicates; bursts chain exactly one retry per interrupted run)
- Run-liveness classification routes `interrupted` to `needs_followup`
rather than `failed`
- Workspace validation self-heals branch mismatch / missing-branch
states instead of failing deterministically on every run
- New `provider_quota` error class: session/usage-limit responses
schedule the retry at the provider reset time and leave the agent idle
(not errored); fixes a case where a quota-terminated run with subtype
`success` was misclassified as failed; HTTP 529 remains transient
- Dashboard run-activity query separates recovered restart kills from
true failures via a recursive CTE over `retry_of_run_id` (ancestors of a
succeeded retry count as recovered), adds a per-day failed-by-error-code
breakdown, and binds the window start as a timestamptz string
- Activity charts UI: amber "Recovered" segment with legend and per-day
error-code tooltip; success-rate chart counts recovered runs as
successes
- New ops runbook: `docs/deploy/dev-plane-restart-hygiene.md`

## Verification

- Greptile follow-up fixes on `992705edd`: `pnpm exec vitest run
server/src/__tests__/server-startup-feedback-export.test.ts
server/src/__tests__/heartbeat-workspace-branch-containment.test.ts
server/src/__tests__/heartbeat-workspace-session.test.ts
server/src/__tests__/heartbeat-process-recovery.test.ts
server/src/__tests__/heartbeat-workspace-finalize-branch.test.ts` (209
tests); `pnpm --filter @paperclipai/server typecheck`; `git diff
--check`
- Post-rebase CI fixes: `pnpm exec vitest run
server/src/__tests__/heartbeat-retry-scheduling.test.ts`; `pnpm exec
vitest run server/src/__tests__/heartbeat-retry-scheduling.test.ts
server/src/__tests__/workspace-runtime.test.ts
server/src/__tests__/heartbeat-workspace-branch-containment.test.ts
server/src/__tests__/heartbeat-workspace-finalize-branch.test.ts
server/src/__tests__/heartbeat-workspace-session.test.ts` (227 tests);
`pnpm --filter @paperclipai/server typecheck`
- `npm test` server suites covering the changes:
`heartbeat-process-recovery`, `heartbeat-stop-metadata`,
`heartbeat-retry-scheduling` (95 tests), quota parse +
execute/retry-scheduling suites (100 tests), workspace self-heal suites
(200 tests), dashboard run-activity tests (3 tests) — all green,
typecheck exit 0
- Dashboard CTE cross-checked against a real development database: two
restart-burst days moved from 17 to 8 and 19 to 6 true failures once
recovered kills were separated, matching manual retry-chain inspection
- Screenshot verification of the real ActivityCharts component
(recovered segment + tooltip) during QA

## Risks

- Behavioral shift: runs killed by a restart no longer surface as
`failed`; anyone consuming raw run statuses will see `interrupted` (new
status value) — dashboards/queries in this repo were updated accordingly
- Retry chaining on repeated restarts is bounded (one chained retry per
interruption) but a pathological restart loop still delays work rather
than failing it; the runbook covers operator hygiene for that case
- Dashboard query adds a recursive CTE; cost is bounded by the
day-window row count and was verified against production-sized data
- No schema migrations; low migration risk

## Model Used

- Claude (Anthropic) — claude-fable-5 via Claude Code / Paperclip agent
harness, extended thinking with tool use; implementation commits also
produced with Codex CLI (GPT-5 class) agents under the same harness

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have searched GitHub for duplicate or related PRs and linked
them above
- [x] I have either (a) linked existing issues with `Fixes: #` / `Closes
#` / `Refs #` OR (b) described the issue in-PR following the relevant
issue template
- [x] I have not referenced internal/instance-local Paperclip issues or
links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip`
URLs)
- [ ] My branch name describes the change (e.g. `docs/...`, `fix/...`)
and contains no internal Paperclip ticket id or instance-derived details
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [x] All Paperclip CI gates are green
- [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups
- [x] I will address all Greptile and reviewer comments before
requesting merge

---------

Co-authored-by: Paperclip <noreply@paperclip.ing>
2026-07-07 20:30:09 -05:00
Devin FoleyandPaperclip 33353ce62b feat(skills): remove bundled paperclip-dev skill and retire required skill attribute (#7029)
## Thinking Path

> - Paperclip is the open source app people use to manage AI agents for
work
> - Local adapters (Claude, Codex, Cursor, Gemini, Grok, OpenCode, Pi,
ACPX) ship bundled "skills" — opinionated Markdown prompt bundles
materialized into the agent's runtime
> - One of those bundled skills, `paperclip-dev`, existed to let agents
develop Paperclip itself; it has now moved to its own external repo and
no longer belongs in the core tree
> - The adapter skill model also carried a `required` / `requiredReason`
attribute plus a `paperclip_required` `AdapterSkillOrigin` variant, all
of which only existed to mark bundled skills as non-optional in the UI
and adapter sync logic
> - With `paperclip-dev` gone, no bundled skill is "required" anymore,
and the type / runtime surface for `required` is dead weight — but it is
computed at request time and never persisted, so a clean removal is safe
(no compatibility shim needed)
> - This pull request deletes `skills/paperclip-dev/` and removes every
trace of the `required` / `requiredReason` field and the
`paperclip_required` origin across shared types, validators,
adapter-utils, all eight local adapters, server routes, the
company-skills service, the UI, the storybook fixtures, and the test
suite
> - The benefit is a smaller, simpler adapter-skill surface: one origin
(`company_managed`) for managed bundled skills,
`resolvePaperclipDesiredSkillNames` collapses to "just the configured
desired set", and the AgentDetail skills tab no longer renders a
"Required by Paperclip" section that no longer applies

## Linked Issues or Issue Description

<!-- No existing public GitHub issue; describing the underlying work
inline (feature_request template fields). -->

**Summary**

Remove the bundled `paperclip-dev` skill (now maintained in its own
external repo) and retire the `required` / `requiredReason` skill
attribute and the `paperclip_required` skill origin, which only existed
to support it.

**Problem or motivation**

`paperclip-dev` is the only bundled skill that was ever marked
"required". Now that it lives in a separate repository, shipping it
inside the core tree is wrong, and the entire `required` surface (a type
field, a validator field, a synthesized `paperclip_required` origin, UI
"Required by Paperclip" section, and required-skill merging in the
desired-skills calculation) becomes dead weight. The `required` value is
computed at request time and never persisted, so it can be removed
cleanly without a migration or compatibility shim.

**Proposed solution**

Delete `skills/paperclip-dev/`, drop the `required` / `requiredReason`
fields and `paperclip_required` origin everywhere they are produced or
consumed, collapse managed-skill origin to a single `company_managed`
value, and simplify `resolvePaperclipDesiredSkillNames` to return only
the configured desired set.

**Alternatives considered**

Keeping the `required` attribute as a no-op for forward compatibility —
rejected because it is request-time only (nothing persists it), so
leaving it in place is pure dead surface area with no callers.

**Roadmap alignment**

Internal cleanup / dead-code removal that simplifies the adapter-skill
surface; it does not introduce or duplicate any planned core feature in
ROADMAP.md.

## What Changed

- Deleted bundled `skills/paperclip-dev/` (moved to a separate repo).
- Dropped `required`, `requiredReason`, and the `paperclip_required`
origin from `packages/shared/src/types/adapter-skills.ts`,
`packages/shared/src/validators/adapter-skills.ts`, and
`packages/adapter-utils/src/types.ts`.
- In `packages/adapter-utils/src/server-utils.ts`: removed
`readSkillRequired()`; dropped `required`/`requiredReason` from
`listPaperclipSkillEntries()`,
`normalizeConfiguredPaperclipRuntimeSkills()`,
`buildPersistentSkillSnapshot()`, and `PaperclipSkillEntry`; collapsed
`buildManagedSkillOrigin()` to always return `company_managed`;
simplified `resolvePaperclipDesiredSkillNames()` to return only the
configured desired set (signature preserved so adapter call sites are
untouched).
- Walked all eight local adapters (`acpx-local`, `claude-local`,
`codex-local`, `cursor-local`, `gemini-local`, `grok-local`,
`opencode-local`, `pi-local`) and removed every remaining
`requiredReason` / `paperclip_required` reference.
- `server/src/services/company-skills.ts`: dropped the `required =
sourceKind === "paperclip_bundled"` synthesis when listing runtime skill
entries.
- `server/src/routes/agents.ts`: removed required-skill merging from the
desired-skills calculation in the persist-config path and the
unsupported-snapshot path (keeping the current version-aware
`desiredSkillEntries` structure).
- `ui/src/pages/AgentDetail.tsx`: dropped required-based filters, the
required tooltip, and the entire "Required by Paperclip" section from
the agent skills tab; storybook fixtures in
`ui/storybook/stories/acpx-local.stories.tsx` cleaned up to match.
- Tests: deleted the `required: false` case in
`paperclip-skill-utils.test.ts` and the "keeps required bundled skills
installed" case in every `*-local-skill-sync.test.ts`;
`acpx-local-execute.test.ts`, `cursor-local-execute.test.ts`,
`cursor-local-skill-sync.test.ts`, `agent-skills-routes.test.ts`, and
`packages/adapter-utils/src/server-utils.test.ts` were updated to drop
removed fields and map `origin: "paperclip_required"` →
`"company_managed"`.
- `server/src/adapters/registry.ts`: two `as unknown as
ServerAdapterModule["..."]` casts on `hermesListSkills` /
`hermesSyncSkills` (matching the existing `executeHermesLocal` pattern).
`hermes-paperclip-adapter@0.2.0` still depends on the published
`@paperclipai/adapter-utils` which keeps the retired
`paperclip_required` variant; the cast bridges the
workspace-vs-published type mismatch at the registry seam and can drop
once hermes upgrades.

## Verification

Run from the workspace root:

```sh
grep -rn "skills/paperclip-dev" .
grep -rn "paperclip_required" --include="*.ts" --include="*.tsx" .
grep -rn "requiredReason" --include="*.ts" --include="*.tsx" .

pnpm -w typecheck
pnpm --filter @paperclipai/server exec vitest run paperclip-skill-utils
pnpm --filter @paperclipai/server exec vitest run skill-sync
```

The first three greps return only the explanatory comment in
`server/src/adapters/registry.ts` (no live `paperclip_required` /
`requiredReason` usage) and zero `skills/paperclip-dev` source hits.

Locally:

- `pnpm -w typecheck` → all packages this PR touches pass
(adapter-utils, shared, server, ui, cli, and the
cursor/gemini/opencode/pi adapters).
- Affected vitest suites pass: `paperclip-skill-utils`, `server-utils`,
all eight `*-local-skill-sync`, `agent-skills-routes`, and the
`acpx`/`cursor`/`pi` execute suites.

## Risks

- Behavioral shift in the agent skills UI: the "Required by Paperclip"
section disappears. No bundled skill is required anymore, so this only
affects environments that previously surfaced `paperclip-dev` as a
forced-on row; those installs will see the skill move into the regular
"company-managed" list (and be uninstalled on next sync unless
explicitly listed as desired).
- Existing agents may still have the string `"paperclip-dev"` in their
persisted `desiredSkills`. That entry is inert (no source for it to
install from); a one-time DB cleanup is out of scope. Low risk.
- Hermes adapter type bridge: two casts in `registry.ts` paper over a
type-only divergence between the workspace `@paperclipai/adapter-utils`
and the published version still pinned by
`hermes-paperclip-adapter@0.2.0`. Runtime behavior is unaffected because
the retired `paperclip_required` value is no longer produced by anything
in this tree. The casts can be removed once hermes upgrades its
dependency.

## Model Used

- Provider: Anthropic
- Model: Claude Opus 4.7 (`claude-opus-4-7`)
- Capability: agent tool use via Paperclip's `claude_local` adapter

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have searched GitHub for duplicate or related PRs and linked
them above
- [x] I have either (a) linked existing issues with `Fixes: #` / `Closes
#` / `Refs #` OR (b) described the issue in-PR following the relevant
issue template
- [x] I have not referenced internal/instance-local Paperclip issues or
links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip`
URLs)
- [ ] My branch name describes the change (e.g. `docs/...`, `fix/...`)
and contains no internal Paperclip ticket id or instance-derived details
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [ ] All Paperclip CI gates are green
- [ ] Greptile is 5/5 with no open P2s, recommendations, or follow-ups
- [x] I will address all Greptile and reviewer comments before
requesting merge

Co-authored-by: Paperclip <noreply@paperclip.ing>
2026-06-20 21:58:44 -07:00
Devin FoleyandPaperclip 67ca8287e8 fix(codex-local): seed managed auth into isolated homes (#8403)
## Thinking Path

> - Paperclip is the open source app people use to manage AI agents for
work
> - The `codex_local` adapter isolates local Codex runs by assigning
managed `CODEX_HOME` state per company and per agent
> - PR #8272 tightened that isolation, but it left a gap: once
`CODEX_HOME` became explicit, the adapter treated it like a user-managed
override and skipped auth seeding
> - That meant newly isolated agents could launch with no usable
`auth.json`, hit OpenAI unauthenticated, and fail with `401 Missing
bearer`
> - Users who had already persisted one of those broken managed homes
could remain stranded even after config changes unless Paperclip
repaired the home itself
> - This pull request teaches Paperclip to seed managed homes correctly,
backfill already-stranded managed homes on startup, and reject
credential-less managed homes before they reach the provider
> - The benefit is that affected managed `codex_local` agents recover
automatically after upgrade and restart, without manual `CODEX_HOME`
surgery

## Linked Issues or Issue Description

- Fixes #497
- Refs #5028
- Related PR: #8272
- Related PR: #8399

## What Changed

- Distinguished Paperclip-managed `CODEX_HOME` paths from genuine
external overrides and always seeded auth into managed homes, even when
`CODEX_HOME` is explicit in config.
- Wrote API-key-backed `auth.json` files for managed homes when
`OPENAI_API_KEY` is configured, otherwise symlinked the shared Codex
auth for subscription/OAuth flows.
- Added a startup reconciliation pass that backfills already-isolated
managed homes created by the broken release so upgrade plus restart
repairs stranded agents automatically.
- Preserved previously resolved API-key auth when the stored
`OPENAI_API_KEY` binding is secret-backed and startup cannot resolve the
secret value directly.
- Hardened the managed-home preflight to require a credential-bearing
`auth.json`, not just file presence, and documented the recovery
behavior.
- Added regression tests covering managed-home seeding, fail-fast
behavior, and server-side startup reconciliation.

## Verification

```bash
pnpm exec vitest run packages/adapters/codex-local/src/server/codex-home.test.ts packages/adapters/codex-local/src/server/execute.auth.test.ts server/src/__tests__/codex-auth-reconciliation.test.ts server/src/__tests__/codex-local-execute.test.ts server/src/__tests__/server-startup-feedback-export.test.ts
pnpm --filter @paperclipai/adapter-codex-local typecheck
pnpm --filter @paperclipai/server typecheck
pnpm check:tokens
pnpm exec vitest run server/src/__tests__/server-startup-feedback-export.test.ts
```

GitHub Actions `PR` workflow is green on latest head `e5b1e08d4`,
including policy, typecheck, test shards, build, e2e, serialized server
suites, and canary dry run. Greptile Review is green on latest head with
0 comments added. No UI changes.

## Risks

- Startup reconciliation now mutates persisted managed Codex homes at
boot. Risk is low because it only touches Paperclip-managed
company/agent home paths and no-ops when a home already has usable auth.
- Genuine external `CODEX_HOME` overrides remain intentionally
self-managed, so those users still own repair steps inside their custom
home.
- Hosts with neither shared Codex auth nor an explicit per-agent API key
now fail earlier with a clearer adapter error instead of surfacing a
downstream `401`, which changes timing but not capability.

## Model Used

- OpenAI Codex, GPT-5-based coding agent in a local Codex session; exact
served model ID/context window were not exposed to the session. Tool use
and code execution were enabled.

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have searched GitHub for duplicate or related PRs and linked
them above
- [x] I have either (a) linked existing issues with `Fixes: #` / `Closes
#` / `Refs #` OR (b) described the issue in-PR following the relevant
issue template
- [x] I have not referenced internal/instance-local Paperclip issues or
links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip`
URLs)
- [x] My branch name describes the change and contains no internal
Paperclip ticket id or instance-derived details
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [x] If this change affects the UI, I have included before/after
screenshots
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [x] All Paperclip CI gates are green
- [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups
- [x] I will address all Greptile and reviewer comments before
requesting merge

---------

Co-authored-by: Paperclip <noreply@paperclip.ing>
2026-06-20 16:17:54 -07:00
Devin Foley a4ac6ff133 Add sandbox callback bridge for remote environment API access (#4801)
## Thinking Path

> - Paperclip orchestrates AI agents for zero-human companies
> - Agents can run inside sandboxed environments like E2B, which are
isolated from the host network
> - Sandboxed agents need to call back to the Paperclip API to report
progress, post comments, and update issue status
> - But sandbox environments cannot reach the Paperclip server directly
because they run in isolated network namespaces
> - This PR adds a callback bridge that proxies API requests from the
sandbox to the Paperclip server, running as a local HTTP server on the
host that forwards authenticated requests
> - The bridge is started automatically when an adapter launches a
sandbox execution, and torn down when the run completes
> - The benefit is sandboxed agents can interact with the Paperclip API
without requiring network-level access to the host, enabling E2B and
similar providers to work end-to-end

## What Changed

- Added `sandbox-callback-bridge.ts` in `packages/adapter-utils/` — a
lightweight HTTP bridge server that accepts requests from sandbox
environments and proxies them to the Paperclip API with authentication
- Added request validation and security policy: the bridge only forwards
requests to the configured API URL, validates content types, enforces
size limits, and rejects non-API paths
- Wired the bridge into all remote adapter execute paths (claude, codex,
cursor, gemini, pi) — the bridge starts before the agent process and the
bridge URL is passed via environment variables
- Updated `environment-execution-target.ts` to prefer the explicit API
URL from environment lease metadata for sandbox callback routing
- Fixed Claude sandbox runtime setup to work with the bridge
configuration
- Added comprehensive test coverage for bridge request handling, policy
enforcement, and sandbox execution integration
- Fixed browser bundling — the bridge module is excluded from the
frontend bundle via the adapter-utils index export

## Verification

- `pnpm test` — all existing and new tests pass, including bridge unit
tests and sandbox execution integration tests
- `pnpm typecheck` — clean
- Manual: configure an E2B environment, run an agent task, verify the
agent can post comments and update issue status through the bridge

## Risks

- Medium. This is a new network-facing component (HTTP server on
localhost). The security policy restricts forwarding to the configured
API URL only and validates all requests, but any proxy introduces attack
surface. The bridge binds to localhost only and is scoped to the
lifetime of a single agent run.

## Model Used

Codex GPT 5.4 high via Paperclip.

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [ ] If this change affects the UI, I have included before/after
screenshots
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [x] I will address all Greptile and reviewer comments before
requesting merge
2026-04-29 16:37:34 -07:00
DottaandPaperclip 8f1cd0474f [codex] Improve transient recovery and Codex model refresh (#4383)
## Thinking Path

> - Paperclip orchestrates AI agents for zero-human companies
> - Adapter execution and retry classification decide whether agent work
pauses, retries, or recovers automatically
> - Transient provider failures need to be classified precisely so
Paperclip does not convert retryable upstream conditions into false hard
failures
> - At the same time, operators need an up-to-date model list for
Codex-backed agents and prompts should nudge agents toward targeted
verification instead of repo-wide sweeps
> - This pull request tightens transient recovery classification for
Claude and Codex, updates the agent prompt guidance, and adds Codex
model refresh support end-to-end
> - The benefit is better automatic retry behavior plus fresher
operator-facing model configuration

## What Changed

- added Codex usage-limit retry-window parsing and Claude extra-usage
transient classification
- normalized the heartbeat transient-recovery contract across adapter
executions and heartbeat scheduling
- documented that deferred comment wakes only reopen completed issues
for human/comment-reopen interactions, while system follow-ups leave
closed work closed
- updated adapter-utils prompt guidance to prefer targeted verification
- added Codex model refresh support in the server route, registry,
shared types, and agent config form
- added adapter/server tests covering the new parsing, retry scheduling,
and model-refresh behavior

## Verification

- `pnpm exec vitest run --project @paperclipai/adapter-utils
packages/adapter-utils/src/server-utils.test.ts`
- `pnpm exec vitest run --project @paperclipai/adapter-claude-local
packages/adapters/claude-local/src/server/parse.test.ts`
- `pnpm exec vitest run --project @paperclipai/adapter-codex-local
packages/adapters/codex-local/src/server/parse.test.ts`
- `pnpm exec vitest run --project @paperclipai/server
server/src/__tests__/adapter-model-refresh-routes.test.ts
server/src/__tests__/adapter-models.test.ts
server/src/__tests__/claude-local-execute.test.ts
server/src/__tests__/codex-local-execute.test.ts
server/src/__tests__/heartbeat-process-recovery.test.ts
server/src/__tests__/heartbeat-retry-scheduling.test.ts`

## Risks

- Moderate behavior risk: retry classification affects whether runs
auto-recover or block, so mistakes here could either suppress needed
retries or over-retry real failures
- Low workflow risk: deferred comment wake reopening is intentionally
scoped to human/comment-reopen interactions so system follow-ups do not
revive completed issues unexpectedly

> For core feature work, check [`ROADMAP.md`](ROADMAP.md) first and
discuss it in `#dev` before opening the PR. Feature PRs that overlap
with planned core work may need to be redirected — check the roadmap
first. See `CONTRIBUTING.md`.

## Model Used

- OpenAI Codex GPT-5-based coding agent with tool use and code execution
in the Codex CLI environment

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [ ] If this change affects the UI, I have included before/after
screenshots
- [ ] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [x] I will address all Greptile and reviewer comments before
requesting merge

---------

Co-authored-by: Paperclip <noreply@paperclip.ing>
2026-04-24 09:40:40 -05:00
Dotta 09d0678840 [codex] Harden heartbeat scheduling and runtime controls (#4223)
## Thinking Path

> - Paperclip orchestrates AI agents through issue checkout, heartbeat
runs, routines, and auditable control-plane state
> - The runtime path has to recover from lost local processes, transient
adapter failures, blocked dependencies, and routine coalescing without
stranding work
> - The existing branch carried several reliability fixes across
heartbeat scheduling, issue runtime controls, routine dispatch, and
operator-facing run state
> - These changes belong together because they share backend contracts,
migrations, and runtime status semantics
> - This pull request groups the control-plane/runtime slice so it can
merge independently from board UI polish and adapter sandbox work
> - The benefit is safer heartbeat recovery, clearer runtime controls,
and more predictable recurring execution behavior

## What Changed

- Adds bounded heartbeat retry scheduling, scheduled retry state, and
Codex transient failure recovery handling.
- Tightens heartbeat process recovery, blocker wake behavior, issue
comment wake handling, routine dispatch coalescing, and
activity/dashboard bounds.
- Adds runtime-control MCP tools and Paperclip skill docs for issue
workspace runtime management.
- Adds migrations `0061_lively_thor_girl.sql` and
`0062_routine_run_dispatch_fingerprint.sql`.
- Surfaces retry state in run ledger/agent UI and keeps related shared
types synchronized.

## Verification

- `pnpm exec vitest run
server/src/__tests__/heartbeat-retry-scheduling.test.ts
server/src/__tests__/heartbeat-process-recovery.test.ts
server/src/__tests__/routines-service.test.ts`
- `pnpm exec vitest run src/tools.test.ts` from `packages/mcp-server`

## Risks

- Medium risk: this touches heartbeat recovery and routine dispatch,
which are central execution paths.
- Migration order matters if split branches land out of order: merge
this PR before branches that assume the new runtime/routine fields.
- Runtime retry behavior should be watched in CI and in local operator
smoke tests because it changes how transient failures are resumed.

> For core feature work, check [`ROADMAP.md`](ROADMAP.md) first and
discuss it in `#dev` before opening the PR. Feature PRs that overlap
with planned core work may need to be redirected — check the roadmap
first. See `CONTRIBUTING.md`.

## Model Used

- OpenAI Codex, GPT-5-based coding agent runtime, shell/git tool use
enabled. Exact hosted model build and context window are not exposed in
this Paperclip heartbeat environment.

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [ ] If this change affects the UI, I have included before/after
screenshots
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [x] I will address all Greptile and reviewer comments before
requesting merge
2026-04-21 12:24:11 -05:00
b9a80dcf22 feat: implement multi-user access and invite flows (#3784)
## Thinking Path

> - Paperclip is the control plane for autonomous AI companies.
> - V1 needs to stay local-first while also supporting shared,
authenticated deployments.
> - Human operators need real identities, company membership, invite
flows, profile surfaces, and company-scoped access controls.
> - Agents and operators also need the existing issue, inbox, workspace,
approval, and plugin flows to keep working under those authenticated
boundaries.
> - This branch accumulated the multi-user implementation, follow-up QA
fixes, workspace/runtime refinements, invite UX improvements,
release-branch conflict resolution, and review hardening.
> - This pull request consolidates that branch onto the current `master`
branch as a single reviewable PR.
> - The benefit is a complete multi-user implementation path with tests
and docs carried forward without dropping existing branch work.

## What Changed

- Added authenticated human-user access surfaces: auth/session routes,
company user directory, profile settings, company access/member
management, join requests, and invite management.
- Added invite creation, invite landing, onboarding, logo/branding,
invite grants, deduped join requests, and authenticated multi-user E2E
coverage.
- Tightened company-scoped and instance-admin authorization across
board, plugin, adapter, access, issue, and workspace routes.
- Added profile-image URL validation hardening, avatar preservation on
name-only profile updates, and join-request uniqueness migration cleanup
for pending human requests.
- Added an atomic member role/status/grants update path so Company
Access saves no longer leave partially updated permissions.
- Improved issue chat, inbox, assignee identity rendering,
sidebar/account/company navigation, workspace routing, and execution
workspace reuse behavior for multi-user operation.
- Added and updated server/UI tests covering auth, invites, membership,
issue workspace inheritance, plugin authz, inbox/chat behavior, and
multi-user flows.
- Merged current `public-gh/master` into this branch, resolved all
conflicts, and verified no `pnpm-lock.yaml` change is included in this
PR diff.

## Verification

- `pnpm exec vitest run server/src/__tests__/issues-service.test.ts
ui/src/components/IssueChatThread.test.tsx ui/src/pages/Inbox.test.tsx`
- `pnpm run preflight:workspace-links && pnpm exec vitest run
server/src/__tests__/plugin-routes-authz.test.ts`
- `pnpm exec vitest run server/src/__tests__/plugin-routes-authz.test.ts
server/src/__tests__/workspace-runtime-service-authz.test.ts
server/src/__tests__/access-validators.test.ts`
- `pnpm exec vitest run
server/src/__tests__/authz-company-access.test.ts
server/src/__tests__/routines-routes.test.ts
server/src/__tests__/sidebar-preferences-routes.test.ts
server/src/__tests__/approval-routes-idempotency.test.ts
server/src/__tests__/openclaw-invite-prompt-route.test.ts
server/src/__tests__/agent-cross-tenant-authz-routes.test.ts
server/src/__tests__/routines-e2e.test.ts`
- `pnpm exec vitest run server/src/__tests__/auth-routes.test.ts
ui/src/pages/CompanyAccess.test.tsx`
- `pnpm --filter @paperclipai/shared typecheck && pnpm --filter
@paperclipai/db typecheck && pnpm --filter @paperclipai/server
typecheck`
- `pnpm --filter @paperclipai/shared typecheck && pnpm --filter
@paperclipai/server typecheck`
- `pnpm --filter @paperclipai/ui typecheck`
- `pnpm db:generate`
- `npx playwright test --config tests/e2e/playwright.config.ts --list`
- Confirmed branch has no uncommitted changes and is `0` commits behind
`public-gh/master` before PR creation.
- Confirmed no `pnpm-lock.yaml` change is staged or present in the PR
diff.

## Risks

- High review surface area: this PR contains the accumulated multi-user
branch plus follow-up fixes, so reviewers should focus especially on
company-boundary enforcement and authenticated-vs-local deployment
behavior.
- UI behavior changed across invites, inbox, issue chat, access
settings, and sidebar navigation; no browser screenshots are included in
this branch-consolidation PR.
- Plugin install, upgrade, and lifecycle/config mutations now require
instance-admin access, which is intentional but may change expectations
for non-admin board users.
- A join-request dedupe migration rejects duplicate pending human
requests before creating unique indexes; deployments with unusual
historical duplicates should review the migration behavior.
- Company member role/status/grant saves now use a new combined
endpoint; older separate endpoints remain for compatibility.
- Full production build was not run locally in this heartbeat; CI should
cover the full matrix.

## Model Used

- OpenAI Codex coding agent, GPT-5-based model, CLI/tool-use
environment. Exact deployed model identifier and context window were not
exposed by the runtime.

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [x] If this change affects the UI, I have included before/after
screenshots
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [x] I will address all Greptile and reviewer comments before
requesting merge

Note on screenshots: this is a branch-consolidation PR for an
already-developed multi-user branch, and no browser screenshots were
captured during this heartbeat.

---------

Co-authored-by: dotta <dotta@example.com>
Co-authored-by: Paperclip <noreply@paperclip.ing>
Co-authored-by: Claude Opus 4.6 <noreply@anthropic.com>
2026-04-17 09:44:19 -05:00
Dotta c1bb938519 Auto-checkout scoped issue wakes in the harness 2026-04-11 10:53:28 -05:00
dotta ec75cabcd8 Enforce execution-policy stage handoffs 2026-04-09 06:16:05 -05:00
dottaandPaperclip 27accb1bdb Clarify issue-scoped comment wake prompts
Co-Authored-By: Paperclip <noreply@paperclip.ing>
2026-04-04 18:14:19 -05:00
dotta b9b2bf3b5b Trim resumed comment wake prompts 2026-04-04 18:14:19 -05:00
dotta b825a121cb Prioritize comment wake prompts 2026-04-04 18:14:19 -05:00
dottaandPaperclip 91e040a696 Batch inline comment wake payloads
Co-Authored-By: Paperclip <noreply@paperclip.ing>
2026-04-04 18:14:19 -05:00
dottaandPaperclip cadfcd1bc6 Log resolved adapter command in run metadata
Co-Authored-By: Paperclip <noreply@paperclip.ing>
2026-03-29 10:55:26 -05:00
Devin FoleyandPaperclip 623ab1c3ea Fix skill injection to use effective CODEX_HOME, not shared home
The previous commit incorrectly used resolveSharedCodexHomeDir() (~/.codex)
but Codex runs with CODEX_HOME set to a per-company managed home under
~/.paperclip/instances/. Skills injected into ~/.codex/skills/ would not
be discoverable by Codex. Now uses effectiveCodexHome directly.

Co-Authored-By: Paperclip <noreply@paperclip.ing>
2026-03-25 16:04:53 -07:00
Devin FoleyandPaperclip eeec52ad74 Fix Codex skill injection to use ~/.codex/skills/ instead of cwd
The Codex adapter was the only one injecting skills into
<cwd>/.agents/skills/, polluting the project's git repo. All other
adapters (Gemini, Cursor, etc.) use a home-based directory. This
changes the Codex adapter to inject into ~/.codex/skills/ (resolved
via resolveSharedCodexHomeDir) to match the established pattern.

Co-Authored-By: Paperclip <noreply@paperclip.ing>
2026-03-25 15:55:51 -07:00
dottaandPaperclip 19154d0fec Clarify Codex instruction sources
Co-Authored-By: Paperclip <noreply@paperclip.ing>
2026-03-23 16:57:33 -05:00
dotta d53714a145 fix: manage codex home per company by default 2026-03-20 14:44:27 -05:00
dotta b4e06c63e2 Refine codex runtime skills and portability assets 2026-03-19 07:15:36 -05:00
dotta 3b03ac1734 Scope Codex local skills home by company 2026-03-18 14:38:39 -05:00
DottaandPaperclip bb788d8360 Treat Codex bootstrap logs as stdout
Co-Authored-By: Paperclip <noreply@paperclip.ing>
2026-03-16 18:26:36 -05:00
Dotta 528505a04a fix: isolate codex home in worktrees 2026-03-13 11:53:56 -05:00