mirror of
https://github.com/paperclipai/paperclip.git
synced 2026-10-14 17:40:37 +02:00
334db53750ac44910e5487dcafe84b4128beb88d
26
Commits
| Author | SHA1 | Message | Date | |
|---|---|---|---|---|
 DottaandPaperclip
|
fc6304dfe5 |
feat(runner): add experimental OpenAI Dot provider over MCP Events (#15402)
## Thinking Path > - Paperclip manages AI agents, tasks, permissions, and execution budgets. > - Paperclip Runner gives each provider the same admitted task and tool authority. > - OpenAI Dot runs outside the local process tree and needs asynchronous work delivery. > - The merged MCP gateway supplies OAuth consent and signed event delivery. > - A personal assistant grant cannot safely stand in for an assigned agent. > - This pull request adds a separate Dot agent connection and a durable Rust Runner bridge. > - The operator can assign work to Dot and inspect its accepted work, tool receipts, and result. ## Linked Issues or Issue Description **Agent or provider** OpenAI Dot, as an experimental provider of the existing Paperclip Runner adapter. **Why this adapter is useful** An operator can assign normal Paperclip tasks to an existing Dot. Dot can read its mailbox, request work on an assigned task, use admitted task tools, and submit a result. Paperclip keeps company scope, checkout, approvals, known budget limits, and activity attribution. **How the agent is invoked** A dedicated `/mcp/runner` OAuth resource pairs one Dot grant with one agent. A signed MCP mailbox event wakes Dot. Dot explicitly accepts the assignment. The Rust Runner owns the durable turn and operation receipts. The first release supports self-hosted instances with a local Runner controller. **Additional context** This extends the merged public MCP gateway from #14846 and the assistant invitation and device-consent work from #14933. This also integrates the merged assistant tool and configuration expansion in #15380. Dot retains its dedicated agent resource and cannot receive personal configuration permission. The public assistant connection remains a personal connection. ## What Changed - Add a durable Rust Dot provider and its TypeScript Runner driver. - Add closed PRP v3 external-provider operations and native execution input v6. - Add company-scoped pairing, mailbox, assignment, and operation records. - Reuse merged browser/device consent, client metadata verification, webhook admissions, refresh, secret rotation, and warm-standby gates. - Keep Dot scopes, issuer, grants, event workers, and tool access separate from personal assistant access. - Add Dot configuration, pairing, readiness, and consent UI. Keep agent grants out of the personal Connections entry. - Regenerate the Dot-only migration after master. Preserve published gateway migrations. Make the new migration safe to reapply. - Document setup, recovery, accounting limits, evidence, and remaining account qualification. - Reverify reconnect callbacks and wake outstanding work with a fresh mailbox reference; preserve the existing assignment and operation receipts. - Clean up Dot bindings and waiting runs on OAuth revoke and refresh-token replay. Old grants cannot revoke replacement bindings. - Restore the pairing reference when an unsaved agent form is reopened; document board-only pairing routes in OpenAPI. - Accept a clean Rust exit after the acknowledged shutdown receipt. Unexpected exits still require recovery. - Clear the cached binding after a successful revoke so a failed connection refresh cannot restore it. - Add production-component Storybook states and screenshots for pairing and connection review. All preview account data is synthetic. - Persist normalized completion, serialize Dot turns and durable work admission, and poll subscription readiness. - Serialize mailbox writes and cursor reads; retain paused fence acknowledgement without task authority. - Authorize admitted review runs without changing the worker assignee. Include the fenced assignment ID in production stop notices. ## Verification - This PR integrates master `4a8178e9c`. Dot migration `0317_messy_famine.sql` follows the published history and is safe to reapply. The merge preserves the reserved migration connection, batch-commit handling, private task checks, task monitors, and native accounting. - Local workspace typecheck, full build, and UI token gates pass. The server typecheck passes after the review fixes. Database and native executor regressions pass. - All twelve real Rust/PostgreSQL Dot integration tests and twelve Dot driver tests pass. The tests cover native document writing and finalization, durable replay, queue admission, mailbox ordering, admitted reviews, stale authority, production stop references, and paused acknowledgements. - Current head `d0e7e0626` passes all 57 checks: 53 pass and four are intentionally skipped. This includes full typecheck, build, tests, Rust Runner verification, browser E2E, release verification, and Canary Dry Run. Greptile rates this exact head 5/5. All review threads are resolved. - The full local root test run is slower than the sharded CI run and has not completed. The full CI test gates pass on the current commit. Focused local regressions pass. - Real-account pairing and event delivery on this base commit remain unqualified. Live account and setup proof are recorded in the follow-up #15414. The following screenshots use synthetic preview data. They show the production pairing component and do not qualify a real account or the full agent setup journey.   ## Risks - This base adapter uses `PAPERCLIP_ENABLE_OPENAI_DOT=1` plus Public MCP and Paperclip Runner. The separate experimental-settings follow-up in #15414 replaces this environment flag with saved operator settings. - Dot does not expose provider token usage or cost. The operator must acknowledge external billing. Known Paperclip budget gates still apply. - Cancellation fences Paperclip authority. It does not confirm that Dot stopped all external activity. - Assigned skill files and third-party MCP bindings are unsupported and reject admission. There is no mounted workspace, model selector, or provider thread identifier. - Hosted agent-broker and remote controller deployments are not qualified. - The new migration follows the merged master history. Existing prototype databases still need the normal master migration history before this Dot-only migration. ## Model Used OpenAI Codex, based on GPT-6. The exact deployment ID and context window size are not exposed in this session. Capabilities used: reasoning, repository editing, code execution, and test inspection. ## Checklist - [x] I have included a thinking path that traces from project context to this change - [x] I have specified the model used (with version and capability details) - [x] I have checked ROADMAP.md and confirmed this PR does not duplicate planned core work - [x] I have searched GitHub for duplicate or related PRs and linked them above - [x] I have either (a) linked existing issues with `Fixes: #` / `Closes #` / `Refs #123` OR (b) described the issue in-PR following the relevant issue template - [x] I have not referenced internal/instance-local Paperclip issues or links (only public GitHub references) - [x] My branch name describes the change and contains no internal Paperclip ticket id or instance-derived details - [x] I have run tests locally and they pass - [x] I have added or updated tests where applicable - [x] I have updated relevant documentation to reflect my changes - [x] I have considered and documented any risks above - [x] All Paperclip CI gates are green - [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups - [x] I will address all Greptile and reviewer comments before requesting merge --------- Co-authored-by: Paperclip <noreply@paperclip.ing> |
||
|
DottaandPaperclip
|
b67db12d90 |
feat: add durable storage for private tasks (#14717)
Add private task and project ownership, downward access grants, and immutable run/workspace provenance. Apply migration 0313 with bounded batch commits and concurrent indexes. Keep the enforcement and sharing changes in their dependent PRs. Co-Authored-By: Paperclip <noreply@paperclip.ing> |
||
|
Devin FoleyandPaperclip
|
98d8a6ccac |
Stop replaying ambiguous database disconnects (#14773)
## Thinking Path > - Paperclip stores agent work and control state in PostgreSQL. > - Its database client must not repeat a mutation after an uncertain result. > - The global retry wrapper treated `write CONNECTION_CLOSED` as proof that PostgreSQL never received a statement. > - postgres.js also uses that message when the connection closes after statement delivery. > - This pull request removes that global replay and tests the actual driver over a local wire connection. > - Callers retain control of retries when they can prove the complete operation is idempotent. ## Linked Issues or Issue Description Follow-up to #13417. Preserve the transaction disconnect handling from #13643 and the explicit actor synchronization retries introduced in #12773. Searched open and closed issues and PRs for database retries, disconnects, and `CONNECTION_CLOSED`. The open circuit-breaker proposal #11142 addresses outage queue growth; it does not establish whether an already-sent statement can be replayed. **What happened?** The database wrapper replayed an arbitrary statement up to three times after `write CONNECTION_CLOSED`. The driver adds `write ` to connection-close errors even after the peer receives the statement. A local protocol peer receives the same submitted INSERT three times when it drops each response. A committed write could therefore execute more than once. **Expected behavior** An ambiguous statement result must fail without automatic replay. A subsequent operation must be able to reconnect. **Steps to reproduce** Run the new wire regression against the parent commit. The six Simple Query cases and the parameterized Drizzle case receive three executions instead of one. The named prepared-client case was already safe and stays covered. The peer reads the entire statement and then closes the connection. This demonstrates repeated delivery with the real driver; it does not claim that a historical incident duplicated a committed write. **Paperclip version or commit** Reproduced on source commit `018993140f` with the patched postgres.js 3.4.9 dependency. **Deployment mode** Built from source with a local PostgreSQL protocol peer. No live provider or customer database is used. ## What Changed - Pass the original postgres.js client to Drizzle and remove the global statement replay wrapper. - Add eight wire regressions: six Simple Query cases for INSERT, side-effect-capable SELECT, and a data-changing CTE, plus parameterized Drizzle and named prepared-client cases. The extended peer processes Parse, Describe, Bind, and Execute, verifies bound parameters, and drops the response only after Execute. Each case checks one delivery and recovery on a fresh query. - Document ambiguous outcomes and the retry compatibility tradeoff. Keep explicit idempotent actor-sync retries and disconnected-transaction handling unchanged. ## Verification - Before the fix: the six Simple Query cases and the parameterized Drizzle case failed with three executions instead of one. The named prepared-client case was already safe. All eight wire cases pass on this branch. - Final focused client, pool teardown, configuration, and actor-sync retry checks: 28 tests passed. `pnpm --filter @paperclipai/db typecheck` also passed after the test-only follow-up. - First implementation head, `pnpm exec vitest run --project @paperclipai/db`: all 158 tests passed across 45 files, including real PostgreSQL transaction/reserved-connection recovery. The local embedded dependency's symlinks were hydrated before this run. - `pnpm -r typecheck`: passed. - `pnpm build`: passed. - The complete local `pnpm test:run` did not finish; no complete local suite pass is claimed. All CI test, typecheck, and build gates passed on the first implementation head `11f8b22d90`. Final-head CI is pending after the test-only follow-up. - `git diff --check`: passed. Reviewed the diff for secrets, personal data, generated output, and run artifacts. ## Risks Some transient statement failures that the global wrapper previously replayed now reach the caller. Operation owners must retry only when they have an idempotency guarantee or a durable receipt that prevents duplicate effects. A connection error is not proof that a write failed to commit. There is no SQL-text retry heuristic, new suppression, schema change, or migration. This change prevents unsafe replay; it does not prevent network disconnects. ## Model Used OpenAI Codex / GPT-6, with reasoning, repository inspection, code execution, and local protocol tests. The exact backend model ID and context-window size are not exposed in this session. ## Checklist - [x] I have included a thinking path that traces from project context to this change - [x] I have specified the model used (with version and capability details) - [x] I have checked ROADMAP.md and confirmed this PR does not duplicate planned core work - [x] I have searched GitHub for duplicate or related PRs and linked them above - [x] I have either (a) linked existing issues with `Fixes: #` / `Closes #` / `Refs #` OR (b) described the issue in-PR following the relevant issue template - [x] I have not referenced internal/instance-local Paperclip issues or links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip` URLs) - [x] My branch name describes the change (e.g. `docs/...`, `fix/...`) and contains no internal Paperclip ticket id or instance-derived details - [x] I have run tests locally and they pass - [x] I have added or updated tests where applicable - [x] I have updated relevant documentation to reflect my changes - [x] I have considered and documented any risks above - [ ] All Paperclip CI gates are green - [ ] Greptile is 5/5 with no open P2s, recommendations, or follow-ups - [x] I will address all Greptile and reviewer comments before requesting merge Final verification (September30): every final-head CI check passed at `3004c5bda39c985c3557547ec45e33870ce5d010`. Greptile scored5/5 on this head, all review threads are resolved, and the branch is mergeable. Eight real-wire regressions cover simple, parameterized Drizzle, and named prepared queries. Full local suite did not produce a completed result; the complete CI matrix passed. This public PR remains open for maintainer merge. --------- Co-authored-by: Paperclip <noreply@paperclip.ing> |
||
|
DottaandPaperclip
|
14795136f5 |
fix(runtime): finalize and recover sandbox workspace exports safely (#14402)
Serialize native workspace finalization, validate streamed archives within bounded limits, and quietly recover unsafe exports from saved results. Preserve exact allocations for exhausted transient failures and provide export-only retry without rerunning the provider. Consolidates #14314, #14315, #14329, and #14334 while preserving the already-merged finalization label changes. Co-Authored-By: Paperclip <noreply@paperclip.ing> |
||
|
Devin Foley
|
e1d2e279a3 |
fix(db): replay a query whose socket write failed on a recycled pooled connection (#13417)
## Thinking Path
> - Paperclip is the open source app people use to manage AI agents for
work
> - A hosted instance keeps its data in Postgres, and it reaches that
database through a connection pooler
> - A pooler recycles the server side of a connection that sat idle. The
client still holds the socket and believes it is open
> - The next query fails while the driver writes it to that dead socket,
with `write CONNECTION_CLOSED host:5432`
> - The request that happened to draw the recycled connection fails,
although nothing is wrong with the query or the database
> - Only one code path guards against this today, so the same error
keeps reaching users and error reporting from every other path
> - This pull request replays a query when the write itself failed,
because those bytes never reached the server
> - The benefit is that a recycled connection costs one retry instead of
one failed request
## Linked Issues or Issue Description
No existing issue. The problem, in the bug report format:
**What happened**
Requests fail with `write CONNECTION_CLOSED <host>:5432` (driver code
`CONNECTION_CLOSED`). It is most visible on the first queries after an
idle period, when the pool holds connections the pooler already
recycled.
**Expected behavior**
A connection that the pooler recycled while it was idle is not a
user-visible failure. The client notices the dead socket and uses a live
connection.
**Steps to reproduce**
1. Run the server against a pooled Postgres endpoint (for example a Neon
`-pooler` host).
2. Leave the instance idle until the pooler recycles the server side of
the pooled connections.
3. Issue any request that queries the database.
**Paperclip version or commit**
Present on master.
## What Changed
- `packages/db/src/transient-write-retry.ts` (new) wraps the root
`postgres.js` client. When a query fails while the driver writes it to
the socket, the wrapper runs it again on a fresh connection. Three
attempts, 50 ms then 100 ms backoff.
- `packages/db/src/client.ts` gives Drizzle the wrapped client. The
teardown registry keeps the real client, because shutdown must end the
actual pool.
- The wrapper is deliberately narrow:
- It matches only the write phase (`code === "CONNECTION_CLOSED"` and a
message that starts with `write CONNECTION_CLOSED`). The write failed,
so the server never saw the query, and a replay cannot run anything
twice. That makes it safe for reads and writes alike.
- An error after the write propagates untouched, because the server may
have acted on the query.
- `CONNECTION_ENDED` and `CONNECTION_DESTROYED` propagate untouched,
because they mean a deliberate shutdown.
- Queries inside `db.transaction()` run on the scoped client that
`sql.begin()` returns, which the wrapper does not touch. A transaction
that loses its connection must abort, not replay.
- A query runs once however many handlers attach to it, and it still
executes lazily, like `postgres.js` itself.
## Verification
```
npx vitest run packages/db/src/transient-write-retry.test.ts # 7 passed
npx vitest run packages/db/src/client-teardown-registry.test.ts \
packages/db/src/client-options.test.ts # existing db suites pass
npx vitest run server/src/__tests__/cloud-tenant-transient-db-retry.test.ts # 6 passed
cd packages/db && npx tsc --noEmit # clean
```
New tests cover the replay, the `.values()` form Drizzle uses, the
attempt budget, an error that must not replay, and one execution per
pending query. A Drizzle round trip runs through a fake wire-protocol
server, which shows the wrapper is transparent to ordinary queries.
## Risks
Low risk.
- The retry only fires for a failure during the socket write, where the
server never received the query. A replay therefore cannot duplicate an
effect.
- A permanently unreachable database costs two extra attempts and 150 ms
before the same error surfaces.
- Transactions keep exactly their current behavior.
- Existing `retryOnTransientDbConnectionError` in the auth middleware
stays. It wraps a broader set of codes for one path, and it is
unaffected.
- No migration. No configuration change. No API change.
## Model Used
- Claude Fable 5 (`claude-fable-5`), 1M context, extended thinking, run
through Claude Code with tool use and code execution.
## Checklist
- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have searched GitHub for duplicate or related PRs and linked
them above
- [x] I have either (a) linked existing issues with `Fixes: #` / `Closes
#` / `Refs #` OR (b) described the issue in-PR following the relevant
issue template
- [x] I have not referenced internal/instance-local Paperclip issues or
links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip`
URLs)
- [x] My branch name describes the change (e.g. `docs/...`, `fix/...`)
and contains no internal Paperclip ticket id or instance-derived details
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [ ] I have updated relevant documentation to reflect my changes — no
documented behavior or configuration changes
- [x] I have considered and documented any risks above
- [ ] All Paperclip CI gates are green — pending first run
- [ ] Greptile is 5/5 with no open P2s, recommendations, or follow-ups —
pending first review
- [x] I will address all Greptile and reviewer comments before
requesting merge
|
||
|
Jannes StubbemannandClaude Fable 5.1
|
023e640a7e |
fix(db): reap idle pool connections, name the pool, and end it on shutdown (#12956)
## Thinking Path > - Paperclip is the open source app people use to manage AI agents for work. > - The server keeps one postgres.js pool (`packages/db/src/client.ts`, `createDb`) for every query it runs. #10795 made the pool tunable from the environment, but the defaults stayed at the driver defaults: an idle connection never closes, the pool reports itself as `postgres.js`, and no code path ever calls `sql.end()`. > - On a hosted Paperclip deployment the server entered a restart loop (a bundled plugin failure that #12953 describes made every run fail, and the pool saturated). Each generation opened its ten connections, died, and left the backends open on the PostgreSQL side until TCP keepalive reaped them hours later. After about 20 generations the backends exceeded `max_connections`, and every later boot died on its first bootstrap query with `sorry, too many clients already`, before `server.listen()`. The loop could not heal itself. #9555 describes the same shape on a launchd-supervised self-hosted install. > - Three properties of the pool combine to make this possible: idle connections are never reaped, the pool is never ended on any exit path, and an operator cannot even find the leaked backends in `pg_stat_activity` because they carry the generic driver name. > - This pull request gives the pool a 60 second idle timeout and the `paperclip` application name by default, exposes `max_lifetime` and `application_name` through the same `DATABASE_*` environment contract that #10795 introduced, and ends the pool on the orderly SIGINT/SIGTERM path and on the fail-loud startup path. > - The benefit is that a restarting or crash-looping server releases its backends instead of accumulating them, and an operator can see and count Paperclip's connections. ## Linked Issues or Issue Description - Refs #9555 — database connection pool leak causes an infinite restart loop under load. This PR closes the "pool never ends, idle connections never close" part of that report. - Refs #12953 — hosted outage report. The pool exhaustion is the second half of that incident; the first half (a stuck sandbox provider plugin) has its own PR. - Related prior PRs: #9597 and #8780 both propose hard-coded `idle_timeout` / `max_lifetime` values in `createDb`. Both predate #10795 (merged), which made these options environment-driven; this PR builds on the merged shape and adds the shutdown `end()` that neither covers. #4006 and #7481 are closed earlier attempts in the same area. ## What Changed - `packages/db/src/client.ts` - New `resolveDatabaseClientOptions()` applies Paperclip defaults on top of the environment: `idleTimeoutSeconds` defaults to 60 (`DEFAULT_DATABASE_IDLE_TIMEOUT_SECONDS`) and `applicationName` to `paperclip` (`DEFAULT_DATABASE_APPLICATION_NAME`). `createDb` uses it for both the environment path and explicit options. - `DATABASE_IDLE_TIMEOUT_SECONDS` now accepts `0` to restore the driver default (keep idle connections open). Negative or non-integer values still throw. - New environment variables: `DATABASE_MAX_LIFETIME_SECONDS` (positive integer, maps to `max_lifetime`) and `DATABASE_APPLICATION_NAME` (non-empty string, maps to `connection.application_name`). - `postgresJsOptions()` maps the two new options. - `server/src/shutdown.ts` - `finalizeServerShutdown` gains two optional ordered steps: `closeHttpListener` runs first, before the application services stop; `closeDatabase` runs after the application services and before the embedded PostgreSQL stop. A failure in either is logged and does not stop the teardown. Final order: listener → application services → database pool → embedded PostgreSQL → instrumentation → Sentry. - New `closeHttpListenerForShutdown()`: stops accepting requests, closes idle keep-alive sockets, waits up to 5 s for open connections, then closes whatever is left. Requests still in flight are drained while every service is available, and none can reach a route after `sql.end()`, on the signal path and the programmatic path alike (the programmatic path's later `server.close` finds the listener closed and skips). - `server/src/app.ts`: the app shutdown hook (`shutdownAppServices`) now stops the plugin job scheduler, whose tick queries the database, so a programmatic `shutdown()` leaves no timer running against the ended pool. - `server/src/index.ts` - `startServer()` is now a thin wrapper around the boot sequence. When the boot sequence throws after the pool exists, the wrapper ends the pool (and the separate migration pool, when configured) before it rethrows. This covers the `process.exit(1)` path in the main module and the CLI `paperclip run` path alike. - The orderly shutdown passes the same `closeDatabaseClients` to `finalizeServerShutdown`. - `endDatabaseClient` tolerates a client without `$client` (test doubles) and uses a 5 second end timeout. - Docs: `docs/deploy/database.md` gets a "Connection Pool Settings" table with every `DATABASE_*` pool variable, its default and its effect; `doc/DATABASE.md` lists the two new variables. - Tests - `packages/db/src/client-options.test.ts`: parsing of the new variables, `0` for the idle timeout, rejection of malformed values, driver option mapping, and the `resolveDatabaseClientOptions` defaults. - `packages/db/src/client.test.ts` (embedded PostgreSQL): `createDb(url)` reports `application_name = paperclip` for its own backend, and a pool with `idleTimeoutSeconds: 1` has zero backends in `pg_stat_activity` after the timeout. - `server/src/shutdown.test.ts`: the listener closes before the application services, and the database close runs between the application services and the embedded PostgreSQL stop; a failing database close is logged while the teardown still finishes; `closeHttpListenerForShutdown` closes idle sockets and resolves on close, force-closes after the grace period, and is a no-op when the listener was never bound. ## Verification - `pnpm --filter @paperclipai/db typecheck` — passes (`check:migrations` + `tsc --noEmit`). - `cd server && pnpm typecheck` — passes. - `cd packages/db && pnpm exec vitest run src/client-options.test.ts src/client.test.ts src/client-teardown-registry.test.ts` — 9 + 18 + 3 tests pass (the `client.test.ts` cases need embedded PostgreSQL; the new one waits up to 10 s for the idle reap and passed in about 3 s). - `cd server && pnpm exec vitest run src/shutdown.test.ts src/__tests__/server-startup-feedback-export.test.ts src/__tests__/bootstrap-claim-routes.test.ts` — 34 + 11 tests pass. The startup-feedback suite exercises `startServer()` with a mocked `createDb`, which is why `endDatabaseClient` tolerates a client without `$client`. - Manual check for a reviewer: start the server against any PostgreSQL, then run `SELECT application_name, state, count(*) FROM pg_stat_activity GROUP BY 1, 2;`. Paperclip's backends now show `paperclip`. Leave the server idle for more than 60 s and the idle backends disappear. Send SIGTERM and the backends close before the process exits. ## Risks - Behavior change with no environment set: idle pooled connections now close after 60 s. The next query after an idle period pays a reconnect (single-digit milliseconds on a local socket). postgres.js reconnects transparently. Set `DATABASE_IDLE_TIMEOUT_SECONDS=0` to keep the previous behavior. - `application_name` changes from `postgres.js` to `paperclip`. Anything that filtered `pg_stat_activity` on the old name would need an update; nothing in this repo does. - The HTTP listener now closes at the start of the final teardown (after the heartbeat run drain, which still needs the API for running agents). The pool close runs after the application services. A late query from a timer that survived the service shutdown would fail with a driver "connection ended" error instead of running; the known database-backed timer (the plugin job scheduler) is now stopped in the service shutdown. - The listener drain adds at most 5 s to a shutdown while long-lived connections (for example WebSocket clients) are open; after that they are closed forcibly. - `startServer()` is split into a wrapper and the boot sequence. The exported signature and return type are unchanged. - No migration, no schema change. ## Model Used - Claude Fable 5.1 (`claude-fable-5-1`) via Claude Code, extended thinking, tool use (file edits, shell, test runs). The change was produced with the model and reviewed by the submitting human. ## Checklist - [x] I have included a thinking path that traces from project context to this change - [x] I have specified the model used (with version and capability details) - [x] I have checked ROADMAP.md and confirmed this PR does not duplicate planned core work - [x] I have searched GitHub for duplicate or related PRs and linked them above - [x] I have either (a) linked existing issues with `Fixes: #` / `Closes #` / `Refs #` OR (b) described the issue in-PR following the relevant issue template - [x] I have not referenced internal/instance-local Paperclip issues or links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip` URLs) - [x] My branch name describes the change (e.g. `docs/...`, `fix/...`) and contains no internal Paperclip ticket id or instance-derived details - [x] I have run tests locally and they pass - [x] I have added or updated tests where applicable - [x] I have updated relevant documentation to reflect my changes - [x] I have considered and documented any risks above - [x] All Paperclip CI gates are green - [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups - [x] I will address all Greptile and reviewer comments before requesting merge 🤖 Generated with [Claude Code](https://claude.com/claude-code) https://claude.ai/code/session_014t3bi2beVNVVHAxK36dmXm --------- Co-authored-by: Claude Fable 5.1 <noreply@anthropic.com> |
||
|
DottaandDev Agent
|
25cf079ec5 |
feat(runner): add Codex-native application integration (#12591)
## Thinking Path > - Paperclip is the open source app people use to manage AI agents for work. > - The runner package is useful only when the application can start, observe, and recover a native Codex run safely. > - Existing direct adapters must keep their current execution and finalization paths. > - The application boundary therefore needs additive persistence, authorization, coordination, and recovery behind an explicit experimental adapter. > - This pull request adds that Codex-only boundary without activating generalized providers, remote environments, or the later task/SDK surfaces. ## Linked Issues or Issue Description **Subsystem affected** Shared contracts, database persistence, adapter utilities, server native-runtime services, and the experimental Paperclip Runner adapter. **Problem or motivation** The already-landed runner package has a qualified Codex path, but the application needs durable native-run state, guarded runtime selection, authenticated coordination, tool security, finalization, and recovery before the experimental adapter can be exercised safely. **Proposed solution** Add a Codex-only `paperclip_runner` application path behind the existing default-off native-runner setting. Bind native state and coordination to company/run identity, preserve persisted-run recovery, and leave every direct adapter on its existing legacy execution path. **Alternatives considered** The earlier stack boundary introduced a generalized executor and remote-environment lifecycle here. That made this PR depend on implementations in higher PRs and changed reusable sandbox behavior globally. Those pieces are now deferred together to #12592. **Roadmap alignment** ROADMAP.md does not list a conflicting native-runner integration project. This change adds the application boundary for the existing Runner architecture. ## What Changed - Added native run/result/finalization/provider-trace persistence, shared validators, and idempotent migration/replay coverage. - Added guarded Codex-only runtime selection, authenticated PRP coordination, recovery, finalization, and interaction services. - Added run/company-bound tool-gateway authorization, credential redaction, SSRF protections, and replay-safe behavior. - Added the explicit `paperclip_runner` adapter behind the default-off rollout setting. - Preserved legacy answered-question wake projection and direct-adapter execution/finalization paths. - Hardened cancellation so only owned in-memory child processes are signaled; persisted recycled PIDs/process groups are never trusted. - Retained the narrow Claude ACPX isolated-context security follow-up discovered after #12590. - Deferred the generalized executor, provider ingress, remote lifecycle, SDK/lab/eval work, release-process changes, and lockfile. ## Verification - Changed-file delta against `master`: 133 files. - GitHub Actions is the authoritative verification environment for this PR. - Full CI, security, and Greptile review will run on this lowest unmerged stack PR. - Local tests/build/typecheck were not run because this checkout is resource constrained. - Static diff/reference checks pass, and `pnpm-lock.yaml` is unchanged. ## Risks - This touches central heartbeat and agent-route code, so legacy compatibility is the primary risk. - Runtime selection remains Codex-only and explicit; direct Codex, Claude, OpenCode, process, HTTP, and plugin adapters remain on their existing paths. - Fresh native starts fail closed while the rollout flag is off; persisted native records remain readable and recoverable. - Cancellation, company/run binding, tool calls, status decisions, and completion writes are guarded or replay-safe. > For core feature work, check [ROADMAP.md](ROADMAP.md) first and discuss it in #dev before opening the PR. Feature PRs that overlap with planned core work may need to be redirected. ## Model Used OpenAI Codex, GPT-5.6, with repository tools, code execution, and parallel agent review. ## Checklist - [x] I have included a thinking path that traces from project context to this change - [x] I have specified the model used (with version and capability details) - [x] I have checked ROADMAP.md and confirmed this PR does not duplicate planned core work - [x] I have searched GitHub for duplicate or related PRs and linked them above - [x] I have either linked existing issues or described the issue in-PR following the relevant issue template - [x] I have not referenced internal or instance-local Paperclip issues or links - [x] My branch name describes the change and contains no internal Paperclip ticket id - [ ] I have run tests locally and they pass — GitHub Actions is authoritative for this resource-constrained checkout - [x] I have added or updated tests where applicable - [x] I have updated relevant documentation to reflect my changes - [x] I have considered and documented risks above - [ ] All Paperclip CI and security gates are green - [ ] Greptile is 5/5 with no open actionable findings - [x] I will address all Greptile and reviewer comments before merge ## Stack - Position: 3 of 5 overall; lowest of 3 currently unmerged - Base: `master` - Previous: [#12590](https://github.com/paperclipai/paperclip/pull/12590), qualified Claude ACPX runtime — merged - Next: [#12592](https://github.com/paperclipai/paperclip/pull/12592), generalized Codex executor, task experience, and developer SDKs --------- Co-authored-by: Dev Agent <dev@paperclip.ing> |
||
|
Nicky LeachandPaperclip
|
036600d922 |
fix(db): close test database clients before the embedded Postgres cluster stops (#12335)
## Thinking Path > - Paperclip is the open source app people use to manage AI agents for work > - Paperclip uses database clients and embedded PostgreSQL test fixtures > - A fixture stopped its embedded PostgreSQL cluster while clients still held connections > - The postgres.js driver then scheduled a write on a stopped connection > - That write escaped the timer callback and caused a test process to exit with an error > - This pull request closes registered clients before the fixture stops its cluster > - The benefit is stable test teardown and clear failure reporting in continuous integration ## Linked Issues or Issue Description Refs: #10869 **What happened?** An embedded PostgreSQL test fixture stopped its cluster while database clients still held open connections. The postgres.js driver then scheduled a deferred write on a dead connection. The write caused an unhandled error after the test shard reported success. **Expected behavior** The fixture closes all live clients for its cluster before it stops the embedded PostgreSQL cluster. Tests then finish without a deferred write on a dead connection. **Steps to reproduce** 1. Run the database regression test with the embedded PostgreSQL fixture. 2. Stop the fixture while its database client still has an open connection. 3. Observe the deferred write and the process exit status. **Paperclip version or commit** Branch base: |
||
|
DottaandPaperclip
|
4d2af732ae |
feat(runner): add native persistence contracts (#12169)
## Thinking Path > - Paperclip is the open source app people use to manage AI agents for work. > - Agent runs need durable records so Paperclip can explain results and final status changes. > - The current heartbeat tables support direct adapters, but they do not model native runner evidence. > - The runner transport and server coordinator must share a strict finalization contract before they write production data. > - This pull request adds that contract and its additive database boundary. > - It does not select the Paperclip Runner or change any existing adapter execution path. > - The benefit is a reviewable persistence layer that preserves all current behavior and supports later guarded integration. ## Linked Issues or Issue Description Refs #11962 Refs #12129 ## What Changed - Add native run result, finalization, completion, assessment, status decision, and status effect tables. - Add inert native metadata to heartbeat runs and events. Keep `legacy` as the default runtime mode. - Bind each evidence relationship to one company, issue, run, contract, result, assessment, and decision with composite constraints. - Add a strict `paperclip.native_finalization.v1` shared type and validator. - Preserve database functions, triggers, and the unique indexes required by foreign keys in JavaScript backups. - Add migration, backup, mixed-owner denial, validator, and direct-adapter compatibility tests. - Document the new records and their ownership rules. ## Verification - Run `pnpm -r typecheck`. - Run `pnpm build`. - Run `pnpm db:generate`. The schema output and migration safety checks remain current. - Run `PAPERCLIP_PSQL_PATH=/Applications/Postgres.app/Contents/Versions/latest/bin/psql pnpm exec vitest run packages/shared/src/validators/native-finalization.test.ts packages/db/src/client.test.ts packages/db/src/backup-lib.test.ts server/src/__tests__/heartbeat-workspace-busy.test.ts server/src/__tests__/heartbeat-comment-wake-batching.test.ts`. All 52 tests pass. - The full local `pnpm test:run` run completed 4,688 tests. It found 30 existing macOS test-environment failures. A serial rerun with the canonical `/private/tmp` path reduced those failures to six existing listener-diagnostics and skill-browser cases. None of those suites use files in this change. - The full Linux GitHub Actions matrix passes. This includes all general-server, serialized-server, workspace, browser, build, typecheck, canary, and aggregate verification jobs. - Greptile passes at 5/5. Contributor trust, Superagent, Socket, and Snyk pass with no finding from this change. - Storybook visual regression skips by path because this pull request has no UI or Storybook change. - Confirm that the diff contains 25 files. Confirm that it contains no workflow or `pnpm-lock.yaml` changes. ## Risks - The migration adds tables, columns, indexes, a function, a trigger, and ownership constraints. It does not remove or rename existing data. - Composite foreign keys reject mixed-company, mixed-issue, and mixed-run evidence even when each ID exists. - The status-version trigger runs only when an issue status changes. Backup tests confirm that restore retains this trigger and its dependencies. - Native source identifiers are unique when present. Legacy event rows remain unchanged. - This change does not add a unique run sequence constraint. The later native writer must allocate its sequence atomically before that invariant can be safe. - Existing adapters keep their current execution and finalization paths. New heartbeat runs default to `legacy` mode. > For core feature work, check [`ROADMAP.md`](ROADMAP.md) first and discuss it in `#dev` before opening the PR. Feature PRs that overlap with planned core work may need to be redirected — check the roadmap first. See `CONTRIBUTING.md`. ## Model Used - OpenAI Codex with GPT-5. The exact deployment ID and context-window size are not exposed. The model used agentic reasoning, repository tools, code execution, and test execution. ## Checklist - [x] I have included a thinking path that traces from project context to this change - [x] I have specified the model used (with version and capability details) - [x] I have checked ROADMAP.md and confirmed this PR does not duplicate planned core work - [x] I have searched GitHub for duplicate or related PRs and linked them above - [x] I have either (a) linked existing issues with `Fixes: #` / `Closes #` / `Refs #` OR (b) described the issue in-PR following the relevant issue template - [x] I have not referenced internal/instance-local Paperclip issues or links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip` URLs) - [x] My branch name describes the change (e.g. `docs/...`, `fix/...`) and contains no internal Paperclip ticket id or instance-derived details - [x] I have run tests locally and they pass - [x] I have added or updated tests where applicable - [x] I have updated relevant documentation to reflect my changes - [x] I have considered and documented any risks above - [x] All Paperclip CI gates are green - [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups - [x] I will address all Greptile and reviewer comments before requesting merge --------- Co-authored-by: Paperclip <noreply@paperclip.ing> |
||
|
DottaandPaperclip
|
a2bf936f9a |
feat(workspaces): sign the workspace login handoff and gate readiness (#11671)
## Thinking Path > - Paperclip is the open source app people use to manage AI agents for work. > - Managed worktree services run isolated Paperclip instances with cloned databases. > - A reachable service was reported as ready even when its database, runtime identity, or login path was not usable. > - The first candidate added verified database seeding and managed repair in #11665. > - This pull request consolidates that candidate with signed login handoff and a complete readiness contract. > - Post-QA fixes close five defects in repair identity, repair responses, UI retry, seed journal handling, and seed-source trust. > - The benefit is a workspace that either opens safely or reports one accurate recovery action. ## Linked Issues or Issue Description No public GitHub issue exists for this work, so the problem is described here. **What happened** Managed workspace URLs could return HTTP 200 and report ready while login failed. QA also found cases where repair used the wrong instance identity, returned a generic error, left the UI stuck, rejected a safe journal lag, or trusted a mutable workspace manifest. **Expected behavior** Opening a ready workspace signs the board user in to the correct isolated instance. Provisioning and repair use a registered source and report a structured recovery state. **Actual behavior** Entry depended on a password copied into the clone. Several failure paths could publish stale readiness, hide the repair precondition, or trust state that the workspace could modify. **Additional context** This pull request includes the commits first published in #11665. That pull request keeps the original base head for review history. This consolidated pull request is the merge candidate. Related open readiness work includes #11575 and #11621. ## What Changed - Adds a short-lived, signed, single-use login ticket. It binds the user, workspace, instance, and runtime origin. - Exchanges the ticket through Better Auth. It creates the session and cookie through the supported adapter path. - Adds protected workspace readiness fields for the database, clone data, login handoff, seed phase, and runtime identity. - Fails readiness closed when the guest has no company or execution-workspace binding. - Binds ticket issuance to the exact cloned user and active company membership selected for the handoff. - Verifies every current active board identity through the exact-user handoff before publication or reuse. - Gates managed runtime publication on the readiness contract and the recorded worktree instance identity. - Refreshes runtime work products from the live runtime row after a port change. - Adds one workspace access card with ready, degraded, repairing, and failed states. - Uses the runtime response identity for repair. It returns structured repair precondition errors. - Lets a valid source journal lag converge during provisioning. - Binds seed and repair manifests to a source registered outside the agent-writable worktree. - Clears recovered UI errors so a successful retry can open the workspace. - Makes runtime tests register canonical sources and avoid ports owned by live host listeners. - Keeps Vitest on source suites when compiled `dist` trees exist. - Isolates CLI and adapter tests from ambient AWS and runtime API environment variables. - Preserves a 404 response for cross-company workspace ID lookups before runtime authorization. - Makes concurrent single-flight coverage independent of path-canonicalization scheduling order. ## Verification The following checks passed on the integrated head: ```sh pnpm -r typecheck pnpm build pnpm check:token-gates pnpm --filter @paperclipai/db check:migrations ``` - The server source lane passed 420 files and 4,953 tests. Five tests were skipped. - The CLI lane passed 57 files and 385 tests. - The database lane passed 26 files and 97 tests. - The shared package passed 58 files and 506 tests. - The adapter utility lane passed 640 tests. Four tests were skipped. - The Claude adapter passed 220 tests. One test was skipped. - The Codex adapter passed 323 tests. - The OpenClaw adapter passed 13 tests. - The OpenCode adapter passed 42 tests. - The plugin SDK passed 45 tests. - The workspace runtime suite passed 124 tests. - The caller-scoped readiness and handoff suite passed 52 tests. - The workspace provisioning shell suite passed 7 tests. - The runtime exposure suite passed 17 tests while live host mappings occupied fixed test ports. - `git diff --check` passed and the worktree is clean. The serialized route lane will run in GitHub CI with its normal shards. No deployment or active-workspace migration was performed. ## Risks - This is a medium-risk authentication and runtime-readiness change. - The login ticket uses exact origin, workspace, instance, and user binding. It has a short expiry and a one-time nonce. - Runtime publication is stricter. A real readiness, identity, per-user handoff, or control-plane database disagreement now blocks publication. - This pull request supersedes #11665 as the merge candidate. Close #11665 after this pull request merges. - No new database migration is included. The lockfile and workflow files are unchanged. - Deployment and active-workspace migration are intentionally outside this pull request. > For core feature work, check [`ROADMAP.md`](ROADMAP.md) first and discuss it in `#dev` before opening the PR. Feature PRs that overlap with planned core work may need to be redirected — check the roadmap first. See `CONTRIBUTING.md`. ## Model Used Claude Opus 5 (`claude-opus-5[1m]`), 1M context, extended thinking, tool use, and code execution produced the main candidate. OpenAI GPT-5 (`gpt-5`) through Codex, with agentic reasoning, tool use, and code execution, integrated the post-QA fixes and hardened the test gates. The Codex context-window size was not exposed. ## Checklist - [x] I have included a thinking path that traces from project context to this change - [x] I have specified the model used (with version and capability details) - [x] I have checked ROADMAP.md and confirmed this PR does not duplicate planned core work - [x] I have searched GitHub for duplicate or related PRs and linked them above - [x] I have either (a) linked existing issues with `Fixes: #` / `Closes #` / `Refs #` OR (b) described the issue in-PR following the relevant issue template - [x] I have not referenced internal/instance-local Paperclip issues or links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip` URLs) - [x] My branch name describes the change (e.g. `docs/...`, `fix/...`) and contains no internal Paperclip ticket id or instance-derived details - [x] I have run tests locally and they pass - [x] I have added or updated tests where applicable - [x] I have updated relevant documentation to reflect my changes - [x] I have considered and documented any risks above - [x] All Paperclip CI gates are green - [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups - [x] I will address all Greptile and reviewer comments before requesting merge --------- Co-authored-by: Paperclip <noreply@paperclip.ing> |
||
|
Devin Foley
|
cb52f0b750 |
db: env-configurable client options; parallelize attention feed queries (#10795)
## Thinking Path
> - Paperclip is the open source app people use to manage AI agents for
work
> - The server stores all state in PostgreSQL through Drizzle and the
postgres.js driver
> - Self-hosted installs run Postgres on localhost, so per-query latency
is near zero; hosted installs often attach Postgres over a network,
sometimes through a transaction-mode pooler
> - The DB client passes no options to the driver, so operators cannot
disable prepared statements or tune the pool without a source edit, and
the deploy docs told them to edit `client.ts`
> - The attention feed also runs its related-data lookups one after
another, so its latency grows as queries × network round trip
> - This pull request adds optional environment configuration for the DB
client and batches the independent attention-feed lookups with
`Promise.all`
> - The benefit is that network-attached deployments get correct pooler
support and a much faster attention feed, while self-hosted behavior
does not change
## Linked Issues or Issue Description
No public issue exists for this; description follows the bug report
template:
**What happened?**
On deployments where PostgreSQL is network-attached (managed providers,
pooled endpoints), the attention feed endpoint is slow:
`attentionService.list()` awaits ~15–20 queries strictly in sequence, so
a 70ms round trip turns into more than one second of pure network wait
per call. Separately, connecting through a transaction-mode pooler
(pgbouncer, Supavisor port 6543, Neon `-pooler` hosts) requires
disabling prepared statements, and the only documented way was to
hand-edit `packages/db/src/client.ts` — which `doc/DATABASE.md` itself
tells operators not to do.
**Expected behavior**
The DB client is configurable from the environment (prepared statements,
pool size, timeouts) with driver defaults when unset, and hot read paths
do not multiply network latency by issuing independent queries
sequentially.
**Steps to reproduce**
1. Run the server with `DATABASE_URL` pointing at a Postgres instance
with ~70ms round-trip latency.
2. Open the attention feed (`GET /companies/:companyId/attention`) and
measure response time — it exceeds one second even with little data.
3. Try to connect through a transaction-mode pooler: there is no
supported configuration to disable prepared statements.
## What Changed
- `packages/db/src/client.ts`: `createDb` accepts a
`DatabaseClientOptions` argument and reads optional env config —
`DATABASE_PREPARED_STATEMENTS`, `DATABASE_POOL_MAX`,
`DATABASE_IDLE_TIMEOUT_SECONDS`, `DATABASE_CONNECT_TIMEOUT_SECONDS`.
When nothing is set, no option is passed to the driver and behavior is
identical to the previous bare `postgres(url)`.
- `packages/db/src/client-options.test.ts` (new): env parsing and
driver-option mapping tests, including malformed-value rejection.
- `server/src/services/attention.ts`: the independent related-data
lookups in each feed section now run under `Promise.all` (issue
summary/image/plan-document maps, decision bundle titles, blocked-issue
maps, the newer-runs scan). Section order, item assembly, and query
shapes are unchanged.
- `doc/DATABASE.md` and `docs/deploy/database.md`: the edit-source
pooling instruction is replaced with the env toggle, plus a short
client-tuning reference.
## Verification
- `pnpm --filter @paperclipai/db exec vitest run
src/client-options.test.ts` — 6 tests pass.
- `pnpm --filter server exec vitest run
src/__tests__/attention-service.test.ts` — 22 tests pass.
- `pnpm --filter server exec vitest run
src/__tests__/decisions-service.test.ts
src/__tests__/decision-training.test.ts` — 45 tests pass; this covers
the call path that runs `attentionService.list()` inside
`db.transaction`, where postgres.js serializes queries on the reserved
connection.
- `tsc` reports no errors in the changed files.
## Risks
- Low risk for self-hosted installs: with no env vars set,
`postgres(url, {})` receives an empty options object, which postgres.js
treats the same as no options — driver defaults throughout.
- The `Promise.all` batches only group queries that had no data
dependency on each other; on the transaction call path the driver still
executes them one at a time on the reserved connection, so transactional
semantics are unchanged.
- Malformed env values now fail fast at startup with a clear message
instead of being silently ignored; this is intentional and only affects
operators who set the new variables.
## Model Used
Claude Fable 5 (`claude-fable-5`), Anthropic — via Claude Code CLI,
extended thinking enabled, tool use (test execution, live latency
measurement against a network-attached Postgres to size the problem).
## Checklist
- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have searched GitHub for duplicate or related PRs and linked
them above (searched "prepared statements", "pgbouncer", "pool",
"attention feed", "lockfile" — closest matches are #10573/#10787
lockfile chores, unrelated to this change)
- [x] I have either (a) linked existing issues with `Fixes: #` / `Closes
#` / `Refs #` OR (b) described the issue in-PR following the relevant
issue template
- [x] I have not referenced internal/instance-local Paperclip issues or
links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip`
URLs)
- [x] My branch name describes the change (e.g. `docs/...`, `fix/...`)
and contains no internal Paperclip ticket id or instance-derived details
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [ ] All Paperclip CI gates are green
- [ ] Greptile is 5/5 with no open P2s, recommendations, or follow-ups
- [x] I will address all Greptile and reviewer comments before
requesting merge
|
||
|
DottaandPaperclip
|
1de0a3bb1e |
feat(mcp) [split 2/8]: add governed access contracts (#9557)
## Thinking Path > - Paperclip is the open source app people use to manage AI agents for work > - Governed MCP access spans contracts, runtime enforcement, adapters, UI surfaces, and operator verification > - The parity reference PR #9534 is too large for effective automated or human review > - The feature therefore needs a linear stack whose individual diffs stay below the 100-file review limit > - This pull request is split 2/8 and focuses on database schema and shared governance contracts > - The benefit is a standalone, testable review boundary while preserving byte-for-byte parity at the top of the stack ## Linked Issues or Issue Description - Related parity reference: #9534 - Problem: The governed access model needs additive persistence and synchronized shared types before server enforcement can compile. - Proposed solution: Adds migrations 0148–0169, tool-access and Smoke Lab schema, shared types/validators/gallery helpers, and the minimal compile-required contract consumers identified by boundary testing. - Alternatives considered: keeping #9534 as one 403-file review, or rewriting the feature to manufacture seams; both were rejected in favor of path extraction plus compile-driven boundary moves. - Roadmap alignment: this advances the existing governed MCP/tool-access work already represented by #9534; it does not introduce a separate roadmap initiative. - Stack position: base branch is `pap10341-split/01-demo-servers`. - Merge policy: merge bottom-up, in order, only after the complete eight-PR stack has been reviewed and the top-of-stack parity gate remains empty. - Requested review: QA for migrations/validators; Greptile on every PR. ## What Changed - Adds migrations 0148–0169, tool-access and Smoke Lab schema, shared types/validators/gallery helpers, and the minimal compile-required contract consumers identified by boundary testing. - Keeps this PR below 100 changed files and independently typecheckable. - Preserves the final tree from #9534 when combined with the other seven stack levels. ## Verification - `pnpm typecheck` — passed, including migration numbering and safety checks - `pnpm --filter @paperclipai/db test` — passed - `pnpm --filter @paperclipai/shared test` — passed ## Risks - Migration or contract mistakes could affect every upper layer; all migrations are additive/idempotent and compile consumers are included in this boundary. - Stack risk: merging out of order can expose incomplete layers; mitigate by following the documented bottom-up merge policy. - Parity risk: later edits to an intermediate branch can drift from #9534; mitigate by re-running the empty top-of-stack diff before merge. > For core feature work, check [`ROADMAP.md`](ROADMAP.md) first and discuss it in `#dev` before opening the PR. Feature PRs that overlap with planned core work may need to be redirected — check the roadmap first. See `CONTRIBUTING.md`. ## Model Used - OpenAI Codex, exact model ID `gpt-5.4`; runtime-managed context window; medium reasoning with repository, shell, Git, GitHub CLI, and code-execution tools enabled. ## Checklist - [x] I have included a thinking path that traces from project context to this change - [x] I have specified the model used (with version and capability details) - [x] I have checked ROADMAP.md and confirmed this PR does not duplicate planned core work - [x] I have searched GitHub for duplicate or related PRs and linked them above - [x] I have either (a) linked existing issues with `Fixes: #` / `Closes #` / `Refs #` OR (b) described the issue in-PR following the relevant issue template - [x] Internal references are omitted except the execution-plan link explicitly required for this coordinated split stack - [x] My branch name describes the change and contains no internal Paperclip ticket id or instance-derived details - [x] I have run tests locally and they pass - [x] I have added or updated tests where applicable - [x] I have updated relevant documentation to reflect my changes - [x] I have considered and documented any risks above - [ ] All Paperclip CI gates are green - [ ] Greptile is 5/5 with no open P2s, recommendations, or follow-ups - [x] I will address all Greptile and reviewer comments before requesting merge ## Stack Coordination - Internal execution plan: [PAP-13874](/PAP/issues/PAP-13874#document-plan) - Parity reference: #9534 - Stack: #9556 → #9557 → #9558 → #9559 → #9560 → #9561 → #9562 → #9563 - Merge bottom-up only after full-stack review and an empty parity diff at #9563. --------- Co-authored-by: Paperclip <noreply@paperclip.ing> |
||
|
dottaandPaperclip
|
8f5196f7d6 |
Add routines automation workflows
Co-Authored-By: Paperclip <noreply@paperclip.ing> |
||
|
Dotta
|
88bf1b23a3 | Harden embedded postgres adoption on startup | ||
|
Dotta
|
3d01217aef | Fix legacy migration reconciliation | ||
|
Volodymyr KartavyiandClaude Opus 4.6
|
057e3a494c |
fix: ensure embedded PostgreSQL databases use UTF-8 encoding
On macOS, `initdb` defaults to SQL_ASCII encoding because it infers locale from the system environment. When `ensurePostgresDatabase()` creates a database without specifying encoding, the new database inherits SQL_ASCII from the cluster. This causes string functions like `left()` to operate on bytes instead of characters, producing invalid UTF-8 when multi-byte characters are truncated. Two-part fix: 1. Pass `--encoding=UTF8 --locale=C` via `initdbFlags` to all EmbeddedPostgres constructors so the cluster defaults to UTF-8. 2. Explicitly set `encoding 'UTF8'` in the CREATE DATABASE statement with `template template0` (required because template1 may already have a different encoding) and `C` locale for portability. Existing databases created with SQL_ASCII are NOT automatically fixed; users must delete their local `data/db` directory and restart to re-initialize the cluster. Relates to #636 Co-Authored-By: Claude Opus 4.6 <noreply@anthropic.com> |
||
|
Dotta
|
83738b45cd | Fix worktree minimal clone startup | ||
|
Matt Van HornandClaude Opus 4.6
|
54b512f9e0 |
fix(db): reuse MIGRATIONS_FOLDER constant instead of recomputing
The local migrationsFolder variable in migratePostgresIfEmpty duplicated the module-level MIGRATIONS_FOLDER constant. Reuse the constant to keep a single source of truth for the migration path. Co-Authored-By: Claude Opus 4.6 <noreply@anthropic.com> |
||
|
Matt Van HornandClaude Opus 4.6
|
c59e059976 |
fix(db): use fileURLToPath for Windows-safe migration paths
URL.pathname returns /C:/... on Windows, causing doubled drive letters when Node prepends the current drive. fileURLToPath handles this correctly across platforms. Fixes #132 Co-Authored-By: Claude Opus 4.6 <noreply@anthropic.com> |
||
|
ForgottenandClaude Opus 4.6
|
d26b67ebc3 |
Add secrets infrastructure: DB tables, shared types, env binding model, and migration improvements
Introduce company_secrets and company_secret_versions tables for encrypted secret storage. Add EnvBinding discriminated union (plain vs secret_ref) to replace raw string env values in adapter configs. Add hiddenAt column to issues for soft-hiding. Improve migration system with journal-ordered application and manual fallback when Drizzle migrator can't reconcile history. Co-Authored-By: Claude Opus 4.6 <noreply@anthropic.com> |
||
|
ForgottenandClaude Opus 4.6
|
4e3da49116 |
Add agent task sessions table, session types, and programmatic DB backup
Add agent_task_sessions table for per-task session state keyed by (agent, adapter, taskKey). Add AgentTaskSession type, resetAgentSessionSchema validator, and sessionDisplayId/sessionParamsJson to AgentRuntimeState. Rework migration hash-resolution fallback ordering to prefer hash-based matching over timestamp-based journal matching. Move backup-db.sh logic into packages/db/src/backup.ts for programmatic use and simplify the shell script to call the TypeScript implementation. Co-Authored-By: Claude Opus 4.6 <noreply@anthropic.com> |
||
|
ForgottenandClaude Opus 4.6
|
778b39d3b5 |
Add agent config revisions, issue-approval links, and robust migration reconciliation
Add agent_config_revisions table for tracking agent configuration changes with rollback support. Add issue_approvals junction table linking issues to approvals. New migrations (0005, 0006) for permissions column and new tables. Rework migration client with statement-level idempotency checks (table/column/index/constraint existence) so migrations can be safely retried against partially-migrated databases. Co-Authored-By: Claude Opus 4.6 <noreply@anthropic.com> |
||
|
ForgottenandClaude Opus 4.6
|
21b7bc8da0 |
Add issue identifiers, activity run tracking, and migration inspection
Add issuePrefix/issueCounter to companies and issueNumber/identifier to issues for human-readable issue IDs (e.g. PAP-42). Add runId to activity_log for linking activity to heartbeat runs. Rework DB client to support migration state inspection and interactive pending migration prompts at startup. Add reopen option to issue comments validator. Co-Authored-By: Claude Opus 4.6 <noreply@anthropic.com> |
||
|
ForgottenandClaude Opus 4.6
|
cc24722090 |
Replace PGlite with embedded-postgres and add startup banner
Switch from PGlite (WebAssembly) to embedded-postgres for zero-config local development — provides a real PostgreSQL server with full compatibility. Add startup banner with config summary on server boot. Improve server bootstrap with auto port detection, database creation, and migration on startup. Update DATABASE.md, DEVELOPING.md, and SPEC-implementation.md to reflect the change. Update CLI database check and prompts. Simplify OnboardingWizard database options. Co-Authored-By: Claude Opus 4.6 <noreply@anthropic.com> |
||
|
ForgottenandClaude Opus 4.6
|
4bc8e8baa9 |
Add embedded PGlite support as zero-config database option
Add @electric-sql/pglite so the server can run without an external Postgres instance. When DATABASE_URL is not set, the server auto-creates an embedded PGlite database in ./data/pglite with schema push on startup. - Add createPgliteDb() alongside the existing createDb() - Make DATABASE_URL optional in server config - Update drizzle config to glob schema files - Update migrate script to support both Postgres and PGlite - Add data/ to .gitignore for local PGlite storage Co-Authored-By: Claude Opus 4.6 <noreply@anthropic.com> |
||
|
ForgottenandClaude Opus 4.6
|
948e8e8c94 |
Add database package with Drizzle schema
Postgres schema via Drizzle ORM for agents, goals, issues, projects, and activity log tables. Includes migration runner, seed script, and Drizzle config. Co-Authored-By: Claude Opus 4.6 <noreply@anthropic.com> |
